##fileformat=VCFv4.2
##FILTER=<ID=GOF,Description="Variant fails goodness-of-fit test.">
##FILTER=<ID=HapScore,Description="Too many haplotypes are supported by the data in this region.">
##FILTER=<ID=MQ,Description="Root-mean-square mapping quality across calling region is low.">
##FILTER=<ID=Q20,Description="Variant quality is below 20.">
##FILTER=<ID=QD,Description="Variants fail quality/depth filter.">
##FILTER=<ID=QualDepth,Description="Variant quality/Read depth ratio is low.">
##FILTER=<ID=REFCALL,Description="This line represents a homozygous reference call">
##FILTER=<ID=SC,Description="Variants fail sequence-context filter. Surrounding sequence is low-complexity">
##FILTER=<ID=alleleBias,Description="Variant frequency is lower than expected for het">
##FILTER=<ID=badReads,Description="Variant supported only by reads with low quality bases close to variant position, and not present on both strands.">
##FILTER=<ID=hp10,Description="Flanking sequence contains homopolymer of length 10 or greater">
##FILTER=<ID=strandBias,Description="Variant fails strand-bias filter">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=AF,Number=1,Type=Float,Description="Allelic frequency for the alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.8-1-0-gf15c1c3ef,Date="Sat Jan 25 21:52:52 UTC 2025",Epoch=1737841972026,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data/MoCha/patidarr/ref/ucsc.hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=10000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=true use_jdk_inflater=true disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=2 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=HC source=/lscratch/45927387//HC.vcf)]), (RodBindingCollection [(RodBinding name=Platypus source=/lscratch/45927387//PL.vcf)])] out=/vf/users/MoCha/processedDATA/589616/20170910/589616~265-R~J2-PDC~WES/calls/589616~265-R~J2-PDC~WES.merged.vcf genotypemergeoption=PRIORITIZE filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=HC,Platypus printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=ALERT,Number=0,Type=Flag,Description="Variant is adjacent to other variants, but case was too complex for joinAdjacentSNPs to handle. Please review.">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BRF,Number=1,Type=Float,Description="Fraction of reads around this variant that failed filters">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Combined depth across samples">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FR,Number=.,Type=Float,Description="Estimated population frequency of variant">
##INFO=<ID=FS,Number=.,Type=Float,Description="Fisher's exact test for strand bias (Phred scale)">
##INFO=<ID=HP,Number=1,Type=Integer,Description="Homopolymer run length around variant locus">
##INFO=<ID=HapScore,Number=.,Type=Integer,Description="Haplotype score measuring the number of haplotypes the variant is segregating into in a window">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=JOINED,Number=0,Type=Flag,Description="Variant is the result of joining adjacent SNPs/MNPs. Please use caution when interpreting sample-specific values.">
##INFO=<ID=MGOF,Number=.,Type=Integer,Description="Worst goodness-of-fit value reported across all samples">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts, for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=MMLQ,Number=1,Type=Float,Description="Median minimum base quality for bases around variant">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=NF,Number=.,Type=Integer,Description="Total number of forward reads containing this variant">
##INFO=<ID=NR,Number=.,Type=Integer,Description="Total number of reverse reads containing this variant">
##INFO=<ID=PP,Number=.,Type=Float,Description="Posterior probability (phred scaled) that this variant segregates">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant-quality/read-depth for this variant">
##INFO=<ID=ReadPosRankSum,Number=.,Type=Float,Description="Mann-Whitney Rank sum test for difference between in positions of variants in reads from ref and alt">
##INFO=<ID=SC,Number=1,Type=String,Description="Genomic sequence 10 bases either side of variant position">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=START,Number=.,Type=Integer,Description="Start position of reference call block">
##INFO=<ID=SbPval,Number=.,Type=Float,Description="Binomial P-value for strand bias test">
##INFO=<ID=Size,Number=.,Type=Integer,Description="Size of reference call block">
##INFO=<ID=Source,Number=.,Type=String,Description="Was this variant suggested by Playtypus, Assembler, or from a VCF?">
##INFO=<ID=TC,Number=1,Type=Integer,Description="Total coverage at this locus">
##INFO=<ID=TCF,Number=1,Type=Integer,Description="Total forward strand coverage at this locus">
##INFO=<ID=TCR,Number=1,Type=Integer,Description="Total reverse strand coverage at this locus">
##INFO=<ID=TR,Number=.,Type=Integer,Description="Total number of reads containing this variant">
##INFO=<ID=WE,Number=1,Type=Integer,Description="End position of calling window">
##INFO=<ID=WS,Number=1,Type=Integer,Description="Starting position of calling window">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##SentieonCommandLine.Haplotyper=<ID=Haplotyper,Version="sentieon-genomics-201711",Date="2025-01-25T21:45:13Z",CommandLine="/data/MoCha/patidarr/sentieon/sentieon-genomics-201711/libexec/driver --temp_dir /lscratch/45926971// -t 26 -r /data/MoCha/patidarr/ref/ucsc.hg19.fasta -i 589616/20170910/589616~265-R~J2-PDC~WES/589616~265-R~J2-PDC~WES.bwa.final.bam --interval /data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed --algo Haplotyper -d /data/MoCha/patidarr/ref/dbsnp_138.hg19.vcf --min_base_qual 20 --min_map_qual 30 /lscratch/45926971//589616~265-R~J2-PDC~WES.HC_DNASeq.raw.vcf">
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
##contig=<ID=chr3,length=198022430,assembly=hg19>
##contig=<ID=chr4,length=191154276,assembly=hg19>
##contig=<ID=chr5,length=180915260,assembly=hg19>
##contig=<ID=chr6,length=171115067,assembly=hg19>
##contig=<ID=chr7,length=159138663,assembly=hg19>
##contig=<ID=chr8,length=146364022,assembly=hg19>
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##contig=<ID=chr11,length=135006516,assembly=hg19>
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##contig=<ID=chrX,length=155270560,assembly=hg19>
##contig=<ID=chrY,length=59373566,assembly=hg19>
##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
##contig=<ID=chr4_ctg9_hap1,length=590426,assembly=hg19>
##contig=<ID=chr4_gl000193_random,length=189789,assembly=hg19>
##contig=<ID=chr4_gl000194_random,length=191469,assembly=hg19>
##contig=<ID=chr6_apd_hap1,length=4622290,assembly=hg19>
##contig=<ID=chr6_cox_hap2,length=4795371,assembly=hg19>
##contig=<ID=chr6_dbb_hap3,length=4610396,assembly=hg19>
##contig=<ID=chr6_mann_hap4,length=4683263,assembly=hg19>
##contig=<ID=chr6_mcf_hap5,length=4833398,assembly=hg19>
##contig=<ID=chr6_qbl_hap6,length=4611984,assembly=hg19>
##contig=<ID=chr6_ssto_hap7,length=4928567,assembly=hg19>
##contig=<ID=chr7_gl000195_random,length=182896,assembly=hg19>
##contig=<ID=chr8_gl000196_random,length=38914,assembly=hg19>
##contig=<ID=chr8_gl000197_random,length=37175,assembly=hg19>
##contig=<ID=chr9_gl000198_random,length=90085,assembly=hg19>
##contig=<ID=chr9_gl000199_random,length=169874,assembly=hg19>
##contig=<ID=chr9_gl000200_random,length=187035,assembly=hg19>
##contig=<ID=chr9_gl000201_random,length=36148,assembly=hg19>
##contig=<ID=chr11_gl000202_random,length=40103,assembly=hg19>
##contig=<ID=chr17_ctg5_hap1,length=1680828,assembly=hg19>
##contig=<ID=chr17_gl000203_random,length=37498,assembly=hg19>
##contig=<ID=chr17_gl000204_random,length=81310,assembly=hg19>
##contig=<ID=chr17_gl000205_random,length=174588,assembly=hg19>
##contig=<ID=chr17_gl000206_random,length=41001,assembly=hg19>
##contig=<ID=chr18_gl000207_random,length=4262,assembly=hg19>
##contig=<ID=chr19_gl000208_random,length=92689,assembly=hg19>
##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
##contig=<ID=chr21_gl000210_random,length=27682,assembly=hg19>
##contig=<ID=chrUn_gl000211,length=166566,assembly=hg19>
##contig=<ID=chrUn_gl000212,length=186858,assembly=hg19>
##contig=<ID=chrUn_gl000213,length=164239,assembly=hg19>
##contig=<ID=chrUn_gl000214,length=137718,assembly=hg19>
##contig=<ID=chrUn_gl000215,length=172545,assembly=hg19>
##contig=<ID=chrUn_gl000216,length=172294,assembly=hg19>
##contig=<ID=chrUn_gl000217,length=172149,assembly=hg19>
##contig=<ID=chrUn_gl000218,length=161147,assembly=hg19>
##contig=<ID=chrUn_gl000219,length=179198,assembly=hg19>
##contig=<ID=chrUn_gl000220,length=161802,assembly=hg19>
##contig=<ID=chrUn_gl000221,length=155397,assembly=hg19>
##contig=<ID=chrUn_gl000222,length=186861,assembly=hg19>
##contig=<ID=chrUn_gl000223,length=180455,assembly=hg19>
##contig=<ID=chrUn_gl000224,length=179693,assembly=hg19>
##contig=<ID=chrUn_gl000225,length=211173,assembly=hg19>
##contig=<ID=chrUn_gl000226,length=15008,assembly=hg19>
##contig=<ID=chrUn_gl000227,length=128374,assembly=hg19>
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##contig=<ID=chrUn_gl000229,length=19913,assembly=hg19>
##contig=<ID=chrUn_gl000230,length=43691,assembly=hg19>
##contig=<ID=chrUn_gl000231,length=27386,assembly=hg19>
##contig=<ID=chrUn_gl000232,length=40652,assembly=hg19>
##contig=<ID=chrUn_gl000233,length=45941,assembly=hg19>
##contig=<ID=chrUn_gl000234,length=40531,assembly=hg19>
##contig=<ID=chrUn_gl000235,length=34474,assembly=hg19>
##contig=<ID=chrUn_gl000236,length=41934,assembly=hg19>
##contig=<ID=chrUn_gl000237,length=45867,assembly=hg19>
##contig=<ID=chrUn_gl000238,length=39939,assembly=hg19>
##contig=<ID=chrUn_gl000239,length=33824,assembly=hg19>
##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##fileDate=2025-01-25
##joinAdjacentSNPs_command=/data/MoCha/patidarr/ngs_pipeline/scripts/joinAdjacentSNPs_up.py -v 589616/20170910/589616~265-R~J2-PDC~WES/calls/589616~265-R~J2-PDC~WES.HC_DNASeq.raw.vcf -o /lscratch/45927387//HC.vcf.tmp 1 589616/20170910/589616~265-R~J2-PDC~WES/589616~265-R~J2-PDC~WES.bwa.final.bam /data/MoCha/patidarr/ref/ucsc.hg19.2bit
##platypusOptions={'assemblyRegionSize': 1500, 'trimReadFlank': 0, 'assembleBadReads': 1, 'bamFiles': ['589616/20170910/589616~265-R~J2-PDC~WES/589616~265-R~J2-PDC~WES.bam'], 'minVarDist': 9, 'trimSoftClipped': 1, 'minReads': 2, 'qualBinSize': 1, 'refFile': '/data/MoCha/patidarr/ref/ucsc.hg19.fasta', 'maxHaplotypes': 50, 'filterVarsByCoverage': 1, 'maxSize': 1500, 'originalMaxHaplotypes': 50, 'skipDifficultWindows': 0, 'parseNCBI': 0, 'skipRegionsFile': None, 'noCycles': 0, 'trimAdapter': 1, 'minPosterior': 5, 'assembleAll': 1, 'trimOverlapping': 1, 'filterDuplicates': 1, 'abThreshold': 0.001, 'minFlank': 10, 'bufferSize': 1000000, 'fileCaching': 0, 'useEMLikelihoods': 0, 'coverageSamplingLevel': 30, 'calculateFlankScore': 0, 'logFileName': 'log/platypus.589616.20170910.589616~265-R~J2-PDC~WES', 'nCPU': 32, 'filterReadsWithUnmappedMates': 1, 'qdThreshold': 10, 'maxVariants': 8, 'scThreshold': 0.95, 'filterReadsWithDistantMates': 1, 'maxReads': 100000000.0, 'badReadsWindow': 11, 'genIndels': 1, 'largeWindows': 0, 'minMapQual': 20, 'maxVarDist': 15, 'maxGOF': 30, 'rlen': 150, 'minGoodQualBases': 20, 'refCallBlockSize': 1000, 'countOnlyExactIndelMatches': 0, 'longHaps': 0, 'HLATyping': 0, 'filterReadPairsWithSmallInserts': 1, 'minBaseQual': 20, 'getVariantsFromBAMs': 1, 'genSNPs': 1, 'assemble': 0, 'assemblerKmerSize': 15, 'minVarFreq': 0.05, 'alignScoreFile': '', 'verbosity': 2, 'sourceFile': None, 'compressReads': 0, 'rmsmqThreshold': 40, 'filteredReadsFrac': 0.7, 'outputRefCalls': 0, 'badReadsThreshold': 15, 'hapScoreThreshold': 4, 'regions': ['/data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed'], 'sbThreshold': 0.001, 'output': '589616/20170910/589616~265-R~J2-PDC~WES/calls/589616~265-R~J2-PDC~WES.Platypus.raw.vcf', 'assembleBrokenPairs': 0, 'mergeClusteredVariants': 1, 'maxGenotypes': 1275, 'nInd': 1}
##reference=file:///data/MoCha/patidarr/ref/ucsc.hg19.fasta
##source=Platypus_Version_0.8.1.1
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	589616~265-R~J2-PDC~WES
chr1	69511	rs75062661	A	G	2840.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.053;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.67;MQRankSum=-1.583;QD=24.92;ReadPosRankSum=-0.582;SOR=0.277;set=HC	GT:AD:AF:DP	1/1:1,113:0.99:114
chr1	752894	rs3131971	T	C	144.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	762273	rs3115849	G	A	12605.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	762589	rs71507461	G	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.59;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	762592	rs71507462	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.59;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	762601	rs71507463	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.82;QD=46.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	762632	rs61768173	T	A	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	792263	rs1044922	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.27;QD=26.33;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	792480	rs2905036	C	T	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.56;QD=26.18;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	866319	rs9988021	G	A	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	866511	.	C	CCCCT	4067.73	.	AC=2;AF=1.00;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr1	871334	rs4072383	G	T	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	876499	rs4372192	A	G	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	877715	rs6605066	C	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	877831	rs6672356	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	879676	rs6605067	G	A	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.75;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	879687	rs2839	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	880238	rs3748592	A	G	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	881627	rs2272757	G	A	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	883625	rs4970378	A	G	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.29;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	884091	.	C	CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	14644.73	.	AC=2;AF=1.00;AN=2;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=33.98;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:5,426:0.99:431
chr1	886788	rs10465242	G	A	11195.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:1,422:1.00:423
chr1	886817	rs10465241	C	T	7204.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	887560	rs3748595	A	C	13269.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr1	887801	rs3828047	A	G	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	888639	rs3748596	T	C	22084.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	1/1:0,838:1.00:838
chr1	888659	rs3748597	T	C	22752.77	.	AC=2;AF=1.00;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	1/1:0,867:1.00:867
chr1	889158	rs13303056	GA	CC	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	889638	rs13303206	G	C	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	892745	rs13303227	G	A	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	894573	rs13303010	G	A	14023.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,532:1.00:532
chr1	897325	rs4970441	G	C	23458.77	.	AC=2;AF=1.00;AN=2;DB;DP=916;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,896:1.00:896
chr1	897564	rs13303229	T	C	34833.77	.	AC=2;AF=1.00;AN=2;DB;DP=1336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,1307:1.00:1307
chr1	898323	rs6605071	T	C	14181.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.71;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,531:1.00:531
chr1	899928	rs6677386	G	C	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.07;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	899937	rs143296006	GG	TC	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.73;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	899942	rs71509448	G	A	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.03;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	899989	rs6669071	A	C	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	900001	rs28754834	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.29;QD=45.52;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	900009	rs6704181	C	G	1321.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=45.58;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	900010	.	G	GC	1267.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	900285	rs4970435	CA	TG	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	900298	rs71628926	C	G	5855.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,144:0.99:146
chr1	909419	rs28548431	C	T	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	909768	rs2340593	A	G	12237.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,482:1.00:482
chr1	911595	rs7417106	A	G	3840.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.31;ReadPosRankSum=-0.791;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:2,156:0.99:158
chr1	912103	.	G	A	1423	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=4;HapScore=1;MGOF=50;MMLQ=26;MQ=55.92;NF=10;NR=49;PP=1423;QD=24.7079866533;SC=CACCAACCCCGGGAACCGCCT;SbPval=0.51;Source=Platypus;TC=60;TCF=10;TCR=50;TR=59;WE=912111;WS=912093;set=Platypus	GT:AD:AF:DP	1/1:1,59:0.98:60
chr1	912126	.	G	A	749	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=8;HapScore=1;MGOF=50;MMLQ=26;MQ=57.29;NF=4;NR=31;PP=749;QD=22.3934632156;SC=CACTCCCCCCGCCAACCCCGG;SbPval=0.81;Source=Platypus;TC=37;TCF=6;TCR=31;TR=35;WE=912134;WS=912116;set=Platypus	GT:AD:AF:DP	1/1:2,35:0.95:37
chr1	914192	rs2340595	G	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	914876	rs13302983	T	C	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	915227	rs13303355	A	G	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	916590	rs28566954	G	A	15640.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.507;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=-0.155;SOR=0.238;set=HC	GT:AD:AF:DP	1/1:1,619:1.00:620
chr1	917640	rs41285816	G	A	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	948846	rs3841266	T	TA	2106.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	948870	rs4615788	C	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=34.97;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	948921	rs15842	T	C	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	949608	rs1921	G	A	14453.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:1,564:1.00:565
chr1	949654	rs8997	A	G	13012.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr1	949925	rs2799070	C	T	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	985449	rs2799067	G	A	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:11,80:0.88:91
chr1	990280	rs4275402	C	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	1103150	rs61768480	G	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	1120337	rs188290957	G	A	12966.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:1,496:1.00:497
chr1	1168141	rs373668725	G	A	6986.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	1196863	rs6659787	T	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	1223331	.	C	T	8167.77	.	AC=2;AF=1.00;AN=2;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	1229111	.	A	ACGCCCCTGCCCTGGAGGCCC	2972.73	.	AC=2;AF=1.00;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	1229680	rs2477781	G	T	12635.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr1	1239339	rs11260584	T	G	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	1242707	rs2274262	A	G	20048.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,761:1.00:761
chr1	1243896	rs61766198	C	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1243929	rs190454859	G	T	57.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	1243934	rs12022139	A	G	57.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	1245198	.	A	G	21242.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=6.670;ClippingRankSum=0.000;DP=914;ExcessHet=3.0103;FS=3.144;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.150;QD=23.58;ReadPosRankSum=0.834;SOR=0.134;set=HC	GT:AD:AF:DP	1/1:9,892:0.99:901
chr1	1245368	rs11590283	G	A	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	1246004	rs2296474	A	G	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	1247494	rs12103	T	C	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	1247550	rs374869753	C	T	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	1247578	.	T	TGGGG	207.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.55;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	1249187	rs12142199	G	A	13291.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=-0.163;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:2,532:1.00:534
chr1	1254136	rs4970432	G	A	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr1	1254436	rs1886773	A	G	14583.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,549:1.00:549
chr1	1254443	rs1886772	G	A	24451.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,568:1.00:568
chr1	1254841	rs10907179	C	G	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	1260168	rs61766199	C	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	1262591	rs2296472	C	T	9703.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	1262801	.	G	A	9347.77	.	AC=2;AF=1.00;AN=2;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	1262837	rs369310216	C	T	9860.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr1	1262966	rs307349	C	T	17722.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.535;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.37;ReadPosRankSum=1.170;SOR=0.242;set=HC	GT:AD:AF:DP	1/1:1,671:1.00:672
chr1	1263144	rs307350	G	A	8233.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	1268847	rs307378	T	G	26752.77	.	AC=2;AF=1.00;AN=2;DB;DP=1058;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,1038:1.00:1038
chr1	1269554	rs307377	T	C	11123.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,426:1.00:426
chr1	1273116	rs307371	A	G	14868.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.138;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=-0.938;SOR=0.387;set=HC	GT:AD:AF:DP	1/1:3,590:0.99:593
chr1	1273278	rs307370	A	G	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr1	1275264	.	A	ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG	4414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DP=413;ExcessHet=3.0103;FS=67.485;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.909;QD=11.26;ReadPosRankSum=12.674;SOR=2.524;set=HC	GT:AD:AF:DP	0/1:265,127:0.32:392
chr1	1275291	.	G	A	2576	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=6;HapScore=1;MGOF=25;MMLQ=26;MQ=59.42;NF=36;NR=111;PP=2576;QD=20;SC=AGCAGCCCCCGCAGACCCACC;SbPval=0.6;Source=Platypus;TC=171;TCF=44;TCR=127;TR=147;WE=1275299;WS=1275281;set=Platypus	GT:AD:AF:DP	1/0:24,147:0.86:171
chr1	1275329	.	TA	CG	1468	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=4;HapScore=2;MGOF=36;MMLQ=23;MQ=59.47;NF=5;NR=28;PP=1468;QD=46.105087117;SC=CAGCAGCCCCTACAGACCCAC;SbPval=0.95;Source=Platypus;TC=74;TCF=21;TCR=53;TR=33;WE=1275338;WS=1275319;set=Platypus	GT:AD:AF:DP	1/0:41,33:0.45:74
chr1	1276973	rs145370195	G	GACAC	30070.73	.	AC=2;AF=1.00;AN=2;DB;DP=676;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=45.63;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,659:1.00:659
chr1	1277533	rs307362	T	C	6319.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	1278237	rs307361	T	C	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	1284490	rs150789461	G	A	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	1288471	rs3766183	C	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	1288583	rs3845295	C	G	7861.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	1288823	rs2296471	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1289367	rs140777846	CTG	C	21056.73	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=44.71;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	1289911	rs4970365	G	A	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	1291159	rs201260508	GA	G	1108.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	1293764	rs34841888	G	C	10092.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	1296691	rs2765025	C	G	8502.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	1310074	rs2765035	C	G	8063.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.52;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	1323078	rs12729599	A	G	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	1323143	rs35654872	CCT	C	5946.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	1323945	rs111530797	GTC	G	362.52	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr1	1362951	.	T	C	6330.77	.	AC=2;AF=1.00;AN=2;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	1385908	.	G	A	1128.77	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.09;QD=28.94;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1387667	rs1781144	C	G	25713.77	.	AC=2;AF=1.00;AN=2;DB;DP=1008;set=Intersection	GT:AD:AF:DP	1/1:0,1004:1.00:1004
chr1	1417696	rs819970	C	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.70;QD=26.05;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1418531	rs819973	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	1455477	rs3128349	C	T	96.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.23;QD=24.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1455503	rs45518337	C	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	1460793	.	C	CT	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.209;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:72,32:0.31:104
chr1	1469394	rs41285840	A	T	15792.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.72;QD=44.87;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	1469399	rs41285842	T	C	15973.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.95;QD=44.37;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	1558792	rs12755088	T	C	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	1562437	rs28510084	C	G	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	1566065	rs139398711	A	AG	783.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr1	1566068	rs28730454	A	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	1574019	rs9442412	A	G	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=-0.751;QD=10.31;ReadPosRankSum=-1.279;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:44,42:0.49:86
chr1	1575616	rs80012316	T	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.36;QD=27.21;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1575836	rs72468213	C	G	2791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.506;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=6.667;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-4.725;QD=7.14;ReadPosRankSum=2.518;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:232,159:0.41:391
chr1	1580738	rs149767621	T	A	2181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=5.137;MLEAC=1;MLEAF=0.500;MQ=47.82;MQRankSum=-6.494;QD=8.62;ReadPosRankSum=0.284;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:132,121:0.48:253
chr1	1581558	rs117719933	C	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.37;QD=24.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1581586	rs61774914	T	C	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.40;QD=25.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1581759	rs61774915	G	A	1469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.820;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=4.983;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-13.128;QD=3.36;ReadPosRankSum=-4.784;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:331,106:0.24:437
chr1	1581926	rs61774917	G	T	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:67,71:0.51:138
chr1	1582106	rs79942991	T	C	9194.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	1582202	rs61774918	C	T	4681.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:314,248:0.44:562
chr1	1582455	rs146214448	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.837;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.89;MQRankSum=-4.903;QD=4.53;ReadPosRankSum=1.060;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	1582794	rs4648754	C	A	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.82;QD=25.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	1582841	rs61774920	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.13;MQRankSum=0.108;QD=15.97;ReadPosRankSum=-0.272;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	1582844	rs61774921	G	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.01;MQRankSum=0.108;QD=18.25;ReadPosRankSum=-1.006;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	1582880	rs61774922	G	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=46.24;MQRankSum=0.729;QD=8.05;ReadPosRankSum=-0.661;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:41,31:0.43:72
chr1	1582961	rs61774949	G	C	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:176,177:0.50:353
chr1	1583003	rs72468214	C	T	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:202,177:0.47:379
chr1	1583088	.	A	G	226	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=23;MQ=50.75;NF=0;NR=13;PP=226;QD=20.0593240421;SC=GTCTTTGGCGAGATCACAGCT;SbPval=1.0;Source=Platypus;TC=41;TCF=7;TCR=34;TR=13;WE=1583096;WS=1583078;set=Platypus	GT:AD:AF:DP	0/1:28,13:0.32:41
chr1	1583276	.	TC	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=-3.494;QD=2.19;ReadPosRankSum=-0.242;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr1	1583495	rs61774952	T	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.795;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=25.658;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-12.380;QD=1.19;ReadPosRankSum=-0.211;SOR=2.709;set=HC	GT:AD:AF:DP	0/1:194,31:0.14:225
chr1	1585597	rs7531938	A	G	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	1585642	rs3936009	G	T	8040.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	1586752	rs11486023	T	C	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	1588670	rs61774958	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	1588717	rs61774959	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=55.39;MQRankSum=-1.123;QD=1.66;ReadPosRankSum=2.099;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr1	1588737	rs61776760	C	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-0.837;QD=2.95;ReadPosRankSum=2.697;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:93,15:0.14:108
chr1	1588743	rs61776761	A	T	273.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-0.612;QD=2.30;ReadPosRankSum=2.399;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:104,15:0.13:119
chr1	1588744	rs79724854	AGCG	A	237.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.289;MLEAC=1;MLEAF=0.500;MQ=53.91;MQRankSum=-0.415;QD=1.79;ReadPosRankSum=2.310;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:118,15:0.11:133
chr1	1599812	rs12729295	C	T	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.560;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=58.768;MLEAC=1;MLEAF=0.500;MQ=45.53;MQRankSum=-7.463;QD=5.03;ReadPosRankSum=-2.461;SOR=6.518;set=HC	GT:AD:AF:DP	0/1:72,25:0.26:97
chr1	1599888	rs2072923	A	G	2413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=51.34;MQRankSum=5.917;QD=10.14;ReadPosRankSum=1.114;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:112,126:0.53:238
chr1	1602787	rs4639697	G	T	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	1607686	rs144293222	A	G	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.22;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	1635004	rs874516	T	C	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.06;QD=26.18;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	1635619	rs2076329	T	C	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	1635749	rs55880629	C	A	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	1636044	rs1059822	G	A	7651.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	1636274	rs2179381	C	T	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	1639046	rs138369165	C	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.93;QD=29.88;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	1639062	rs149613000	T	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.67;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	1639801	rs74378830	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.07;QD=24.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	1644908	rs2179383	C	T	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	1645050	rs77869096	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.23;QD=26.11;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	1645838	rs33938712	CA	C	1390.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.29;QD=35.66;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1646074	rs201159473	A	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1646077	rs76473385	G	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1646113	rs199941510	G	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1646231	rs200994957	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1646236	rs202149796	C	T	176.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.93;QD=35.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	1646789	rs760927	T	C	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.05;QD=24.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	1647722	rs114460890	G	T	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.460;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=11.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-2.931;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr1	1647725	rs368680882	GT	AG	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.049;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=10.941;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-2.815;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr1	1647729	.	CA	TG	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=5.565;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=-3.012;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:48,33:0.41:81
chr1	1647745	rs72634830	G	A	3262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=4.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.77;ReadPosRankSum=-2.139;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:86,79:0.48:165
chr1	1647753	rs74045984	C	T	3525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.217;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.015;QD=17.20;ReadPosRankSum=-1.764;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:103,102:0.50:205
chr1	1647778	rs72901773	C	G	3356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=5.504;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.388;QD=9.76;ReadPosRankSum=-0.002;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:168,176:0.51:344
chr1	1647814	rs72901775	T	C	6597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.441;QD=9.04;ReadPosRankSum=1.911;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:371,359:0.49:730
chr1	1647871	rs72909014	T	C	9928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=994;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.678;QD=10.06;ReadPosRankSum=-1.850;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:477,510:0.52:987
chr1	1647893	rs144636354	C	CTTTCTT	13314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=832;ExcessHet=3.0103;FS=4.066;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.786;QD=18.70;ReadPosRankSum=-0.106;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:366,346:0.49:712
chr1	1647968	rs146207119	C	CAT	3272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.814;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=11.651;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.468;QD=17.32;ReadPosRankSum=1.885;SOR=1.400;set=HC	GT:AD:AF:DP	0/1:103,86:0.46:189
chr1	1647971	rs77394327	G	A	3260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.514;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=11.677;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-2.741;QD=17.25;ReadPosRankSum=1.163;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:104,85:0.45:189
chr1	1647983	rs74429813	T	A	2760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.059;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.503;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-2.926;QD=21.74;ReadPosRankSum=-2.694;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:64,63:0.50:127
chr1	1647990	rs76519969	C	T	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.541;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-3.468;QD=17.90;ReadPosRankSum=-1.713;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:61,49:0.45:110
chr1	1648002	rs77107184	C	T	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-3.881;QD=16.66;ReadPosRankSum=1.004;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr1	1648018	rs79409185	C	T	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.744;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-4.199;QD=8.75;ReadPosRankSum=1.504;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr1	1648027	rs61776857	T	C	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.83;QD=32.91;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	1650657	.	C	G	189	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=2;MGOF=23;MMLQ=26;MQ=60.0;NF=10;NR=1;PP=189;QD=20.3428375043;SC=CTTTCAGCTACAGTTTGCTTT;SbPval=0.94;Source=Platypus;TC=29;TCF=22;TCR=7;TR=11;WE=1650665;WS=1650655;set=Platypus	GT:AD:AF:DP	0/1:18,11:0.38:29
chr1	1650787	rs1137003	T	C	7701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=0.322;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:219,201:0.48:420
chr1	1650797	rs1059830	A	G	8328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=-0.092;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:231,211:0.48:442
chr1	1650801	rs1137004	T	C	7904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.30;ReadPosRankSum=-0.160;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:225,207:0.48:432
chr1	1650807	rs1137005	T	C	4736.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:224,237:0.51:461
chr1	1650832	rs72909030	A	G	4402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=1.332;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:257,224:0.47:481
chr1	1650845	rs1059831	G	A	5189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.796;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.050;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:249,265:0.52:514
chr1	1650920	rs36191908	G	A	8853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.036;QD=16.55;ReadPosRankSum=0.001;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:278,257:0.48:535
chr1	1650938	.	CGG	C	7946.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.411;QD=17.86;ReadPosRankSum=-0.901;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:234,211:0.47:445
chr1	1650942	.	A	AAG	7710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.413;QD=18.14;ReadPosRankSum=-0.136;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:227,198:0.47:425
chr1	1650960	rs72634834	G	A	5731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.663;QD=17.53;ReadPosRankSum=0.695;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:186,141:0.43:327
chr1	1650967	rs75384210	T	C	4675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-1.411;QD=15.80;ReadPosRankSum=2.232;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:178,118:0.40:296
chr1	1650996	rs74223875	T	C	2543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-1.459;QD=14.05;ReadPosRankSum=0.207;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:106,75:0.41:181
chr1	1651003	rs76941027	G	A	2346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-1.496;QD=16.41;ReadPosRankSum=-0.586;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:82,61:0.43:143
chr1	1651047	.	C	T	467	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=2;MGOF=142;MMLQ=26;MQ=60.02;NF=3;NR=18;PP=467;QD=23.8938672642;SC=TCTCCAACTTCAGGCATCTTT;SbPval=0.83;Source=Platypus;TC=47;TCF=10;TCR=37;TR=21;WE=1651055;WS=1651037;set=Platypus	GT:AD:AF:DP	0/1:26,21:0.45:47
chr1	1651054	.	CTT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-1.235;QD=2.52;ReadPosRankSum=1.658;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	1651077	rs70937183	C	CTCGCTCTGTCACCCAGGCT	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.69;QD=48.45;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	1653004	rs36039898	T	C	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	1653028	rs16825265	C	T	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	1654038	rs61777494	G	A	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.43;QD=24.61;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	1654058	rs61777495	C	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.85;QD=47.29;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1654064	rs200615789	A	T	1321.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.54;QD=44.06;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1654065	rs35174499	AGCG	A	1312.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.54;QD=43.76;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1657021	rs9439499	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.30;QD=25.84;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	1663851	rs2294486	G	C	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	1663861	rs2294487	G	A	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	1664019	rs2294488	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	1666175	rs61777509	C	T	1489.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.998;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.074;MLEAC=2;MLEAF=1.000;MQ=45.29;MQRankSum=1.721;QD=22.57;ReadPosRankSum=1.851;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,64:0.97:66
chr1	1666251	rs77655487	G	A	1720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.023;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.500;MQ=45.77;MQRankSum=1.361;QD=10.06;ReadPosRankSum=-1.141;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:84,87:0.51:171
chr1	1666338	rs2072924	G	A	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.28;QD=25.13;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	1669646	rs201497363	ACT	A	407.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	1669748	rs115554296	A	G	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	1669964	rs369037660	G	A	76.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	1670570	rs150051592	T	C	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.00;QD=16.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	1684347	rs150880809	C	CCCT	16397.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.420;QD=37.96;ReadPosRankSum=-1.811;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:26,406:0.94:432
chr1	1684472	rs7407	C	T	12344.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr1	1685213	rs2072928	C	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	1685921	rs139385870	TCCCTGGGACCGAAGTCGCCCCA	T	5776.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	1686081	rs75816936	G	A	24874.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.325;ClippingRankSum=0.000;DB;DP=1015;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.080;QD=25.33;ReadPosRankSum=2.343;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:2,980:1.00:982
chr1	1686689	.	C	T	4280.77	.	AC=2;AF=1.00;AN=2;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	1688192	rs2281173	A	G	5270.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	1688469	rs4648623	C	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	1688823	.	TA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.894;QD=0.70;ReadPosRankSum=1.244;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr1	1690126	rs79655042	A	AAC	905.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	1690793	rs2235538	G	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	1696659	rs5021859	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	1724503	rs33952351	C	CA	250.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.54;QD=17.91;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	1823922	rs6688000	A	G	22039.77	.	AC=2;AF=1.00;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	1/1:4,875:1.00:879
chr1	1846582	rs2748987	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	1853615	rs113294876	T	TCTGA	1028.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	1854321	rs2250833	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	1855450	rs28423370	A	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	1856098	rs752965	C	T	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	1859131	rs4648734	C	T	13886.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,542:1.00:542
chr1	1870210	rs2803323	G	A	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	1873625	rs12758705	G	A	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	1886501	.	C	A	367	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=3;HapScore=2;MGOF=23;MMLQ=26;MQ=59.89;NF=17;NR=4;PP=367;QD=19.1319625022;SC=ACCGGAAGTGCGGCTCACACC;SbPval=0.68;Source=Platypus;TC=23;TCF=18;TCR=5;TR=21;WE=1886509;WS=1886491;set=Platypus	GT:AD:AF:DP	1/1:2,21:0.91:23
chr1	1886519	.	C	CGGCTCACACCGGAAGTGAGGCTCACACCGGAAGTGA	1782.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=77.51;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	1887019	rs28548017	A	G	8105.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	1890704	.	G	GT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.905;QD=1.78;ReadPosRankSum=0.886;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr1	1895177	rs7523728	C	T	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	1896440	rs16824585	G	A	7454.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	1896553	rs28625839	C	T	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	1897753	rs4648600	C	G	6713.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	1900024	rs56985589	TG	T	650.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	1900106	rs145742571	T	TCTC	3318.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	1900232	rs16824588	T	C	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=25.20;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	1900332	rs55709963	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	1900339	rs56126097	A	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1916890	rs3795280	C	T	9446.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	1918488	rs4350140	A	G	10791.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr1	1918535	rs4535948	A	T	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	1918584	rs4603072	C	T	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	1918595	rs4466593	G	A	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	1920434	.	T	TA	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.059;QD=9.64;ReadPosRankSum=-0.551;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:16,46:0.74:62
chr1	1922303	rs13303195	C	T	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	1956362	rs2376805	G	A	20691.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.137;ClippingRankSum=0.000;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=-0.033;SOR=0.409;set=HC	GT:AD:AF:DP	1/1:1,789:1.00:790
chr1	1957037	rs2229110	T	C	31941.77	.	AC=2;AF=1.00;AN=2;DB;DP=1241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,1228:1.00:1228
chr1	1960926	rs28581504	T	C	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	1988168	.	C	CT	45	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5002;HP=17;HapScore=4;MGOF=28;MMLQ=22;MQ=58.52;NF=0;NR=4;PP=45;QD=12.0;SC=TTTTCTTTGACTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=13;TCF=1;TCR=12;TR=4;WE=1988176;WS=1988158;set=Platypus	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	2005740	rs2459986	T	C	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	2106840	rs12135175	T	C	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	2106896	rs12135178	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	2118539	rs2503699	T	C	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	2126139	rs6662296	C	G	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.77;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	2132648	rs147932497	C	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	2144365	.	C	A	2988.77	.	AC=2;AF=1.00;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	2144788	rs262695	A	G	16660.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr1	2144982	rs2480714	G	T	8297.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr1	2286947	rs1039100	A	G	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	2328714	rs2645081	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	2337032	rs1129171	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	2340200	rs2494598	T	C	11766.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,461:1.00:461
chr1	2487663	rs2227312	C	A	9384.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:1,371:1.00:372
chr1	2487766	rs2227313	T	C	10165.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	2488153	rs4870	A	G	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	2490898	rs2257763	C	A	12374.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:1,471:1.00:472
chr1	2490942	rs2281852	C	A	13125.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=-1.464;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:1,503:1.00:504
chr1	2491205	rs2234161	C	T	23204.77	.	AC=2;AF=1.00;AN=2;DB;DP=887;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,877:1.00:877
chr1	2494785	rs8725	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	2518186	rs10752746	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	2520302	rs6667564	T	C	9310.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	2520500	rs6701238	G	A	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	2520527	rs6670198	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	2523212	rs876938	G	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	2523999	.	G	A	621	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=1;MGOF=169;MMLQ=23;MQ=57.68;NF=28;NR=10;PP=621;QD=17.2571371723;SC=TGCCGTGCTGGCGCCCCCTCC;SbPval=0.45;Source=Platypus;TC=41;TCF=31;TCR=10;TR=38;WE=2524007;WS=2523993;set=Platypus	GT:AD:AF:DP	1/1:3,38:0.93:41
chr1	2524205	rs745368	C	T	8335.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.13;ReadPosRankSum=1.678;SOR=0.291;set=HC	GT:AD:AF:DP	1/1:1,318:1.00:319
chr1	2524457	rs745367	T	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	2526571	rs56305550	G	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	2526746	rs3748816	A	G	9140.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	2535613	rs4648562	C	A	15849.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr1	2535758	rs4648652	A	G	6245.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.580;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=5.114;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.59;ReadPosRankSum=-0.144;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:4,250:0.98:254
chr1	2537095	rs78506337	G	A	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	2537838	rs41300092	C	T	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	2538349	rs10797436	G	A	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	2541269	rs10797440	A	G	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	2542653	rs10910111	A	G	5771.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	2983963	rs2297828	G	A	12620.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr1	3310928	rs145881072	C	CCG	795.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.88;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	3328358	rs870124	T	C	45027.77	.	AC=2;AF=1.00;AN=2;DB;DP=1746;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,1726:1.00:1726
chr1	3350134	rs10752734	T	C	200.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	3350173	rs2493271	T	C	7952.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	3350409	rs3748837	G	A	7546.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	3383593	rs3893316	G	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	3383665	rs7550948	G	A	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	3383898	rs6424078	A	G	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	3385250	rs1417897	C	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	3385330	rs2493249	T	C	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	3389727	rs2185639	C	T	19560.77	.	AC=2;AF=1.00;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	1/1:2,777:1.00:779
chr1	3390238	rs2493323	T	A	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	3394456	rs4638054	T	C	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	3394640	rs4422946	A	G	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	3394674	rs4534324	T	C	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	3395039	rs10797395	G	A	16223.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,631:1.00:631
chr1	3395229	rs4553117	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	3395973	rs70938094	ACC	A	13986.73	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=42.90;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr1	3396609	rs881978	C	T	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	3397188	rs2487677	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	3413868	rs4648506	C	G	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	3416449	rs7553399	C	A	6812.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	3417131	rs2821031	A	G	8000.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	3417960	rs4648507	G	A	10630.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr1	3418391	rs4648508	C	T	19029.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,756:1.00:756
chr1	3440647	rs2794322	T	C	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	3440824	rs10797399	G	A	6307.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	3496328	rs2821051	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	3496479	rs2794340	T	C	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	3518944	rs7521546	T	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	3527944	rs10797402	C	G	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	3528082	rs10797403	T	C	8935.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr1	3545175	rs147637374	GTTCTGGGAGCTCCTCCCCC	G	653.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	3548136	rs2760321	T	C	8542.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	3563512	rs34514629	GC	G	784.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	3566625	rs145464993	AGCAGGCTG	A	2393.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	3566706	rs2251098	G	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	3599514	rs57596460	C	T	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	3599750	rs57492244	TG	T	4683.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	3638674	rs1801174	C	T	29411.77	.	AC=2;AF=1.00;AN=2;DB;DP=1146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,1125:1.00:1125
chr1	3683690	rs1181873	A	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	3701491	rs2996426	A	G	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	3743433	rs5772126	T	TG	3175.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	3746583	rs2275828	G	T	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	3746589	rs2275826	C	G	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	3747580	rs6424058	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	3747603	rs6413779	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	3753136	rs2275824	A	T	13297.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.43;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,523:1.00:523
chr1	3755675	rs1891941	T	C	21363.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,818:1.00:818
chr1	3756120	rs1539649	A	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	3759784	rs10797347	A	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	3759937	rs10909801	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	3759940	.	ATT	A	53.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	3761479	rs2275822	C	T	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	3761650	rs2275821	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	3765095	.	C	CAAAAA	269.75	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.50;QD=33.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	3775454	rs4376673	C	G	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	3782217	.	C	T	8310.77	.	AC=2;AF=1.00;AN=2;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	3782608	rs10909809	C	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	3788978	.	G	GA	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.871;QD=1.70;ReadPosRankSum=-0.509;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:88,32:0.27:120
chr1	3789194	.	G	GCGGCCC	8323.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.00;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	3789195	.	T	TGTCCCTGCCAC	8274.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	3806643	rs4520357	T	A	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	3807593	rs4274008	G	C	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	3809423	rs11807227	G	A	10275.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr1	3816854	rs61770363	G	A	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	3816893	rs71634382	C	T	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr1	4772717	rs242056	G	A	8243.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=27.12;SOR=1.205;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	4829795	rs3950181	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	5935162	rs1287637	A	T	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	5937168	rs3747992	G	A	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr1	5937391	rs3747989	C	T	9009.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr1	5937413	rs3747988	A	C	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	5939544	rs11121915	T	G	8722.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr1	5948677	rs2282281	G	A	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	5964991	rs3737234	T	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	6027167	rs875574	C	A	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	6027252	rs875573	A	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	6029086	rs34702999	CA	C	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=2.659;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	6038583	rs4908639	G	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	6100458	rs12566866	G	A	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	6170424	rs78789357	CG	C	10323.73	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	6171992	rs59788818	C	A	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	6172875	rs4908515	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	6173649	rs2785580	A	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	6184092	rs2843493	A	G	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	6184192	rs2273041	A	G	6395.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	6184286	rs2273040	A	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	6185064	rs55930553	G	A	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	6185532	rs2273037	G	A	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	6186961	rs2746060	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	6188044	rs3215558	TG	T	1238.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	6188377	rs72632513	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	6188546	rs2273034	G	A	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	6188779	rs2273033	G	C	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	6195493	rs2250504	G	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	6196493	rs7526887	A	G	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	6196517	rs7513548	G	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	6196869	rs2250358	A	G	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	6196943	rs2746066	A	G	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	6196951	rs2785582	T	A	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	6204161	rs17436816	G	A	11318.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr1	6204266	rs9435102	A	G	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	6206648	rs41279488	C	A	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	6206882	rs148974462	G	A	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	6239937	rs70981314	C	CG	7401.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=36.82;SOR=1.242;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	6305292	rs61760836	C	A	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	6305303	rs61760837	C	A	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	6309319	rs1883608	C	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	6311626	.	C	T	168.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr1	6313938	rs12735670	C	T	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	6314349	rs6696630	A	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	6314479	rs12740426	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	6314822	rs11590458	T	C	7740.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	6453520	rs76483502	C	CG	226.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=32.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	6500604	.	C	CG	592.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.59;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	6500610	rs200454180	AC	A	794.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.75;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	6500626	.	C	CG	826.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.37;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	6505671	rs11121879	G	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	6508945	.	C	T	1850.77	.	AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	6527596	rs117494970	A	G	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	6530965	rs111312565	C	CG	2978.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.10;SOR=1.295;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	6535254	.	GCCCTCCTCCCCACCCTCCTTCCCACCCTCCTTCCCAA	G	871.73	.	AC=2;AF=1.00;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	6545390	rs75490131	A	T	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.34;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	6579607	rs1556035	C	T	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	6585804	rs13513	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	6586070	rs7548042	C	T	8679.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	6591937	rs932112	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	6609563	rs34630031	CAT	C	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	6609792	rs34858690	G	GT	12330.73	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	6609851	rs10864622	A	G	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	6614230	rs10864625	G	A	2135.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.104;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.73;ReadPosRankSum=-0.697;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,89:0.99:90
chr1	6614391	rs6693391	A	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	6614415	rs6693400	A	G	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	6615690	rs925745	A	G	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	6635231	rs10864628	A	G	12204.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr1	6694513	rs1043703	GA	TT	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	6704635	rs200458	A	G	8207.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	6705874	rs200454	G	C	11435.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:2,453:1.00:455
chr1	6866978	rs660880	G	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	6931643	rs55944233	T	TA	293.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=20.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	7151479	rs72640073	T	C	9577.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr1	7289606	rs6659573	T	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=38.80;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	7289612	rs6659575	T	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.95;QD=44.80;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	7289619	rs6577423	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.95;QD=42.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	7527996	rs1201529	T	C	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	7737799	rs3011926	A	G	7532.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	7796641	rs2071985	A	G	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	7797503	rs41278952	C	G	8803.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	7797734	rs1417986	T	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	7845087	rs697682	G	A	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	7845695	rs228729	T	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	7847362	rs35115980	C	CT	87.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	7847529	rs2859390	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	7847614	rs697685	G	A	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	7861304	rs707465	T	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.24;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	7869915	rs228668	G	C	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	7870048	rs228669	T	C	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	7870144	rs228670	A	C	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	7886424	rs697693	G	A	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	7887248	rs2859387	G	A	13285.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr1	7887493	rs228696	T	C	25273.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=1010;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.92;ReadPosRankSum=0.879;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:2,973:1.00:975
chr1	7889804	rs228701	C	G	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	7889941	rs2640908	C	T	13366.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr1	7889972	.	GAGAATCCATCCCATCCTACTGCCAGCGCTCTGTCCACAGGATCGCCTCCCATGA	G	4869.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DP=543;ExcessHet=3.0103;FS=2.922;MLEAC=2;MLEAF=1.000;MQ=61.32;MQRankSum=1.775;QD=23.19;ReadPosRankSum=-2.900;SOR=1.321;set=HC	GT:AD:AF:DP	1/1:10,200:0.95:210
chr1	7890264	rs1773135	A	G	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	7906476	rs172932	G	T	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	7907007	rs697694	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	7907968	.	C	CA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.102;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr1	7907971	rs707473	C	A	687.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.59;ReadPosRankSum=1.168;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr1	7913004	rs45512694	A	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	7913430	rs228648	G	A	6918.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.943;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=3.139;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-0.488;SOR=0.329;set=HC	GT:AD:AF:DP	1/1:1,273:1.00:274
chr1	7998963	rs226476	T	G	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	8030994	rs71653619	G	A	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	8384268	rs6702047	T	C	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	8390246	rs12565834	T	C	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	8390888	rs2289731	G	A	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	8395441	rs2305016	T	C	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	8415235	rs1889854	C	T	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	8415290	rs1889853	C	A	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	8418644	rs11121172	C	A	16320.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=45.21;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	8418650	rs1058766	T	C	16629.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=43.19;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	8421092	rs2784735	C	T	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	8421203	rs13596	T	C	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	8422676	rs2252865	T	C	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	8424984	rs34269918	GA	G	2153.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	8526142	rs4908760	G	A	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	8557320	rs7518608	C	G	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	8557691	rs7530745	A	C	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	8716321	rs3831914	CTCTTTG	C	2332.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	8926285	rs3831913	A	AG	3180.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	8926752	rs2781065	T	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	8930369	rs2781060	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	8930385	rs2765511	G	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	8935149	rs2038904	A	G	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	9011586	rs3765968	T	G	8593.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	9011722	rs3765966	G	T	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	9073801	rs7537425	C	T	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	9074932	rs1556757	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	9097934	rs116780481	G	A	9100.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:1,357:1.00:358
chr1	9165868	rs1705303	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	9189324	.	G	GTACCCCGGCCTTTAAGCCCCGCCTACATTCCCCGCCCCGCCCCGCCGTCCCGGGCCCTGAGCCCCGCCCACGCGCCGCACCCCGCCCCTC	2250.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=112.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	9305445	rs34603401	A	C	21393.77	.	AC=2;AF=1.00;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	1/1:0,828:1.00:828
chr1	9323910	rs6688832	G	A	18132.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr1	9416151	rs9435243	G	A	11623.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr1	9658465	rs9430181	T	G	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	9658707	rs9430182	G	A	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	9661061	rs9430184	A	G	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	9670483	rs4244632	T	A	9632.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	9670834	rs4926472	C	T	6830.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:1,261:1.00:262
chr1	9671257	rs70979767	CT	C	1134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-0.779;QD=8.80;ReadPosRankSum=0.476;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:31,98:0.76:129
chr1	9770690	rs112806445	C	CAG	1084.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=13.91;ReadPosRankSum=0.369;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:34,44:0.56:78
chr1	9779871	rs9430220	T	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	9792105	rs377673198	G	GA	702.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	9816620	rs6680090	T	C	8925.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	10001235	rs137978085	TTTCG	T	2512.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	10027540	rs2890358	G	A	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	10041298	.	AT	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=6.448;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=0.38;ReadPosRankSum=-0.228;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:105,31:0.23:136
chr1	10057203	rs3811458	G	T	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	10132493	rs34652791	C	CT	409.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=-0.357;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr1	10166681	rs185265971	G	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	10190575	rs61760196	G	C	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	10190884	rs2295294	A	T	6108.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	10218377	rs2273298	A	G	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	10218439	rs2273299	T	C	7779.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	10238674	.	G	A	4325.77	.	AC=2;AF=1.00;AN=2;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	10239647	rs41310363	A	G	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	10240094	rs1046277	C	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	10322054	rs4846209	G	A	7535.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	10327407	rs12141246	A	T	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=26.02;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	10331450	rs41258245	T	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=2.107;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	10334924	rs17396973	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	10335315	rs6685773	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	10339129	rs72865963	G	A	10907.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr1	10342352	rs3748575	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	10342522	rs17034660	G	A	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	10342629	rs3748576	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	10356848	rs912961	A	G	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	10357206	rs58344165	A	AT,ATT	536.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.000;QD=16.26;ReadPosRankSum=0.129;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:5,11,17:0.33,0.52:33
chr1	10357406	rs3748577	A	G	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	10384711	rs201407650	C	CT	232.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	10386550	rs3819096	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	10394536	rs2276100	C	G	6978.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	10397567	rs2297881	A	G	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	10399811	rs3215996	TA	T	383.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=1.400;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr1	10399812	rs200470260	A	T	142.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.551;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr1	10402009	rs33942183	CA	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.798;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=10.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-1.271;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	10403482	rs1556916	G	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	10420937	rs3748579	C	T	7845.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	10423319	rs72867421	T	C	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	10425117	rs34161257	AT	A	551.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	10428452	rs12130563	G	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	10431329	rs72867431	C	T	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	10435170	rs11121551	T	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	10459779	rs3737155	G	A	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	10460716	rs35314429	A	AT	506.19	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:7,29:0.81:36
chr1	10468005	rs144558011	C	CA	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.472;QD=1.97;ReadPosRankSum=0.274;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:119,41:0.26:160
chr1	10471789	rs2236678	A	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	10473196	rs2229687	C	T	13352.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	10473200	rs41289075	G	A	13507.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	10479353	rs111695814	C	T	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	10479635	rs2298570	C	G	21094.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:0,820:1.00:820
chr1	10479791	rs41274480	G	A	7414.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	10502307	rs33919161	AT	A	445.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr1	10511330	rs3838398	AT	A	388.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=20.46;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	10511589	rs666103	T	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	10529194	rs2781233	T	C	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	10555257	rs622623	C	T	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	10596388	rs2480779	A	G	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	10678488	rs284238	A	T	10961.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	10678610	rs284237	G	A	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	10689942	rs11539794	G	T	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	11008341	rs10864483	G	A	12382.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,479:1.00:479
chr1	11016942	rs11121660	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	11016986	rs12030736	A	G	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	11017026	rs12041143	C	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	11018573	rs12077098	G	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	11024271	rs11121662	G	T	13919.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,541:1.00:541
chr1	11024353	rs6659231	A	G	9257.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,359:1.00:359
chr1	11024381	rs6659326	A	G	6407.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	11024395	rs11121663	T	C	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	11026381	.	T	TA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.268;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:149,32:0.18:181
chr1	11079077	rs2273348	A	G	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	11080723	rs143130606	T	TG	4632.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	11080740	.	G	A	3867.77	.	AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=46.60;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	11086097	rs3215616	A	AT	3115.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.66;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	11087524	rs1782455	G	A	11282.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr1	11087835	rs1782454	T	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	11090916	rs12711521	C	A	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	11094665	rs11121684	G	A	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	11094757	rs70977538	G	GA	254.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	11095039	rs6695096	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	11104845	rs9430347	T	C	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.93;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	11105106	rs2273345	C	T	4255.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	11105122	rs2273344	C	T	4382.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	11115177	.	C	CT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.216;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr1	11119899	rs7545802	T	C	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	11126569	rs2791659	C	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	11126941	rs6701726	C	T	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	11128001	rs2791657	A	G	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	11128329	rs2791656	A	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	11128654	rs2791655	G	A	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr1	11129848	rs2791653	A	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	11132217	rs1130683	G	A	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	11133956	.	A	AAAG	1172.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.97;QD=30.86;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	11134157	rs2748876	T	G	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	11134470	.	A	AT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.478;QD=2.49;ReadPosRankSum=0.440;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr1	11137778	rs2259886	C	T	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	11140621	rs58972264	AC	A	626.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.65;QD=26.11;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	11140623	.	ACACAC	A,AAC	546.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.65;QD=22.78;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:0,9,15:0.38,0.62:24
chr1	11141187	rs2258621	C	G	10521.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	11151779	rs1148482	A	G	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	11169795	.	A	G	2464.77	.	AC=2;AF=1.00;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	11187893	rs1770344	T	C	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	11205058	rs1057079	C	T	13205.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr1	11288758	rs1064261	G	A	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	11292666	rs10864495	T	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	11294474	rs718206	T	A	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	11298790	rs2024627	T	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	11301714	rs1135172	A	G	13562.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr1	11317320	rs2092642	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	11318763	rs2076657	C	G	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	11319587	rs4845988	A	G	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	11561593	rs2817580	G	A	13538.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr1	11575375	rs2594318	T	A	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	11579470	rs2072994	G	A	12194.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr1	11593793	rs113116961	T	TGCACACACGCAC	5872.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.34;MQRankSum=1.311;QD=25.99;ReadPosRankSum=0.494;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:8,218:0.96:226
chr1	11708736	rs1055547	T	C	11453.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:2,448:1.00:450
chr1	11709051	rs56192923	A	AG	4841.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.43;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	11709052	.	C	G	1218	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=3;HapScore=1;MGOF=21;MMLQ=27;MQ=60.0;NF=38;NR=31;PP=1218;QD=18.1561045297;SC=GCCCAGCCCACCCCAGCCCAG;SbPval=0.55;Source=Platypus;TC=69;TCF=38;TCR=31;TR=69;WE=11709060;WS=11709042;set=Platypus	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	11709052	.	C	CCCAG	4841.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.69;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	11714368	rs2272983	T	G	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	11740329	rs151210857	AGGCGTGAGCCAC	A	9412.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	11772303	rs1883574	A	G	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	11772526	rs1883573	A	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	11782781	rs7533583	G	C	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	11782885	.	C	CTT	2359.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.87;ReadPosRankSum=-1.339;SOR=0.201;set=HC	GT:AD:AF:DP	1/1:5,74:0.94:79
chr1	11782886	rs6540990	C	T	2750.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=3.297;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.064;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.27;ReadPosRankSum=-1.629;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,76:0.97:78
chr1	11796168	rs146190997	CGGGCG	C	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	11807426	rs12752700	C	T	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	11808706	rs11121819	T	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	11822163	rs72856861	G	C	9193.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr1	11824242	rs4845876	A	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	11824303	rs4845877	T	C	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	11824346	rs4845878	G	A	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	11824556	rs4845879	A	G	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr1	11824575	rs10864536	T	C	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.62;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	11824578	rs11121825	C	T	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	11825851	rs10218813	G	C	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr1	11826630	rs6668699	C	T	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	11827180	rs6540995	A	G	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	11827304	rs6540996	A	G	12845.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr1	11827355	rs6540997	A	G	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	11828238	rs4845880	G	A	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	11828319	rs4845881	G	A	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	11831615	rs6667720	C	T	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	11831756	rs6680385	A	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	11832100	rs11121827	T	A	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	11832311	rs10779764	G	C	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	11836441	rs6699669	TG	CA	9808.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	11836628	rs6699881	T	C	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	11836682	rs7538516	C	T	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	11838848	rs6697244	G	T	11421.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	11839966	rs4846043	G	A	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	11839998	rs4846044	T	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	11842144	rs10864542	C	G	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	11844330	rs10864543	C	T	7280.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:2,285:0.99:287
chr1	11845113	rs11587953	G	A	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr1	11845169	rs11586659	T	G	8271.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	11847334	rs35134728	G	GGAA	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	11847759	rs3737966	C	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	11848879	rs2077360	A	G	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	11849447	rs868014	A	G	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	11854457	rs4846051	G	A	9966.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	11854755	rs1994798	G	A	14226.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.195;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.05;ReadPosRankSum=0.854;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:1,567:1.00:568
chr1	11856378	rs1801133	G	A	4675.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	11867044	rs3737964	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	11883815	rs199676414	G	A	8682.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	11884555	rs198400	A	G	7234.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	11900035	rs198410	G	A	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	11918259	.	G	A	9666.77	.	AC=2;AF=1.00;AN=2;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr1	12004479	.	TAC	T	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.404;QD=2.06;ReadPosRankSum=0.437;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:71,22:0.24:93
chr1	12157288	rs11569835	T	C	5154.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr1	12175729	rs1763642	C	T	13898.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr1	12249031	rs1201157	A	G	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	12252333	rs112033722	CTG	C	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=1.025;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr1	12368705	.	GT	G	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.099;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	12401868	rs28551666	A	C	6426.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	12567232	rs7554257	A	G	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	12628471	rs4072868	A	C	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	12632992	rs4846122	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	12638964	rs2275875	T	C	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	12639168	rs3128461	A	G	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	12639197	rs144457264	GCCA	G	9863.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	12639226	rs61776831	C	T	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	12640650	rs11540058	C	T	9609.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr1	12722028	rs1892065	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	12725943	rs1419298	T	C	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	12779560	rs3010876	T	C	13556.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	12779563	rs78912772	C	T	13483.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	12779618	rs3010877	T	C	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	12785093	rs4361998	T	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	12785494	rs7513079	G	T	7315.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:4,307:0.99:311
chr1	12786070	rs3000930	A	G	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	12820870	rs1132185	T	C	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	12835868	rs1812242	T	C	4667.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	12837634	rs848578	T	A	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	12837840	rs848577	G	C	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	12854530	rs1063776	C	G	12115.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=25.29;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,479:1.00:479
chr1	12888601	rs113914674	G	GC	1845.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	12888706	rs61777005	C	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=-0.967;QD=10.38;ReadPosRankSum=-0.000;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	12907282	rs139731855	G	C	2575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-11.131;QD=9.72;ReadPosRankSum=-0.423;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:189,76:0.29:265
chr1	12907284	rs149796618	TG	CC	2572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=2.317;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-11.301;QD=9.49;ReadPosRankSum=0.310;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:195,76:0.28:271
chr1	12907316	rs112607517	T	C	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.103;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=7.470;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=-15.550;QD=3.61;ReadPosRankSum=3.802;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:262,91:0.26:353
chr1	12907350	rs2359486	CA	TG	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.906;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=5.939;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-19.021;QD=4.53;ReadPosRankSum=5.056;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:424,87:0.17:511
chr1	12907370	rs2076063	A	T	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=3.991;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-19.171;QD=2.81;ReadPosRankSum=-1.854;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:500,76:0.13:576
chr1	12907379	rs74055698	TC	CA	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=7.841;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-15.272;QD=2.23;ReadPosRankSum=-4.670;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:530,65:0.11:595
chr1	12907385	rs150590256	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=6.505;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-14.378;QD=1.24;ReadPosRankSum=-5.495;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:558,58:0.09:616
chr1	12907777	rs28391533	T	C	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.877;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=10.829;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-14.721;QD=3.24;ReadPosRankSum=-2.638;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:388,56:0.13:444
chr1	12907781	rs28441396	T	C	2108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.694;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=10.911;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-13.297;QD=4.68;ReadPosRankSum=-4.522;SOR=1.650;set=HC	GT:AD:AF:DP	0/1:379,72:0.16:451
chr1	12907798	rs150096254	A	C	3944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=13.367;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-11.689;QD=7.99;ReadPosRankSum=-4.972;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:375,119:0.24:494
chr1	12907802	rs138087690	CC	TT	4202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=13.072;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-11.324;QD=8.36;ReadPosRankSum=-4.446;SOR=1.455;set=HC	GT:AD:AF:DP	0/1:375,128:0.25:503
chr1	12907829	rs74866336	T	C	7801.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:188,346:0.65:534
chr1	12907837	rs1736811	C	T	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:354,204:0.37:558
chr1	12907885	rs848418	T	C	6124.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:298,308:0.51:606
chr1	12908236	rs1736809	G	T	1355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=5.210;MLEAC=1;MLEAF=0.500;MQ=46.18;MQRankSum=-4.150;QD=10.27;ReadPosRankSum=-1.541;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:90,42:0.32:132
chr1	12908243	rs1736808	A	G	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.520;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=11.650;MLEAC=1;MLEAF=0.500;MQ=46.28;MQRankSum=-4.278;QD=9.79;ReadPosRankSum=-0.189;SOR=1.948;set=HC	GT:AD:AF:DP	0/1:85,35:0.29:120
chr1	12919081	rs45443899	C	T	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.13;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	12919983	rs77138000	G	A	11460.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.932;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;MQRankSum=16.522;QD=24.97;ReadPosRankSum=1.330;SOR=0.319;set=HC	GT:AD:AF:DP	1/1:6,453:0.99:459
chr1	12921127	rs12139549	A	G	7686.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=25.45;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	13183439	rs28713604	T	C	3581.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:275,190:0.41:465
chr1	13183511	rs72864546	T	C	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:373,151:0.29:524
chr1	13183528	rs76937665	A	C	3985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=3.969;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-11.168;QD=7.52;ReadPosRankSum=0.416;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:409,121:0.23:530
chr1	13183532	rs77505369	CC	TT	3553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=4.079;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-11.095;QD=6.71;ReadPosRankSum=-0.351;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:414,116:0.22:530
chr1	13183567	rs78160026	C	T	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.783;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=18.392;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-14.399;QD=1.70;ReadPosRankSum=-5.358;SOR=2.370;set=HC	GT:AD:AF:DP	0/1:440,61:0.12:501
chr1	13183573	rs76669210	G	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.270;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=32.778;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-15.771;QD=1.38;ReadPosRankSum=-3.737;SOR=4.554;set=HC	GT:AD:AF:DP	0/1:430,43:0.09:473
chr1	13183780	rs116484938	A	C	814.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.865;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.57;MQRankSum=-3.442;QD=23.28;ReadPosRankSum=-0.877;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr1	13695974	rs142734546	T	C	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.64;QD=26.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	13696022	rs201136502	A	G	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.97;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	13802325	rs3013105	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	13802437	rs3013106	G	A	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	13802617	rs79959055	T	C	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	13933855	rs35870640	A	G	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	13936822	rs404658	G	T	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	13937089	rs2487643	G	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	13940864	rs2486188	C	G	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	14049497	rs11580827	C	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	14057425	rs35643856	G	GA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.35;ReadPosRankSum=2.005;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:146,32:0.18:178
chr1	14104818	rs11579363	T	C	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	15390145	rs2076565	A	G	30531.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.23;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,759:1.00:759
chr1	15390178	rs2076564	C	T	26849.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.66;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,588:1.00:588
chr1	15390211	rs2076563	G	A	16270.73	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	15428358	rs477953	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	15439083	rs140963536	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	4849.73	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=43.30;SOR=2.345;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	15497727	rs6429722	T	C	6105.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	15497832	rs41307794	T	C	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	15497844	rs10429935	T	A	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	15541537	rs3753314	C	T	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	15546077	rs3753313	G	A	13190.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,508:1.00:508
chr1	15573689	rs1780596	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	15573711	rs1752018	C	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	15573758	rs1780597	G	A	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	15573769	rs1752017	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	15573775	rs1780598	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	15573950	rs1780599	A	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	15574076	rs1752016	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	15578195	rs1622686	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	15650784	rs3765354	T	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.90;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	15650791	rs3765355	G	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.56;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	15651062	rs3765356	A	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	15653503	rs7532559	A	G	5999.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	15653563	rs3765357	C	T	11279.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr1	15654737	rs144888008	C	CT	1954.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.897;QD=11.04;ReadPosRankSum=0.726;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:45,132:0.75:177
chr1	15668276	rs763821	G	A	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	15724003	rs2253371	A	G	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	15724033	rs2253372	A	G	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	15754484	rs2473356	T	C	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	15755248	rs3765372	C	T	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	15769876	rs35149641	G	GC	4457.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	15772057	rs10927786	G	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	15772933	rs555015	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	15783081	rs2303194	T	C	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=26.40;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	15783096	rs5772641	GA	G	5806.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=3.835;MLEAC=2;MLEAF=1.000;MQ=59.77;MQRankSum=-0.574;QD=17.92;ReadPosRankSum=-2.477;SOR=1.250;set=HC	GT:AD:AF:DP	1/1:14,310:0.96:324
chr1	15783117	rs5772642	C	CA	14919.73	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=36.48;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr1	15788491	rs3737697	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	15788630	rs7512589	G	A	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	15788693	rs7536007	C	T	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	15789176	rs3815786	C	T	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	15789297	rs3815787	A	C	27837.77	.	AC=2;AF=1.00;AN=2;DB;DP=1099;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=25.61;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,1087:1.00:1087
chr1	15812432	rs6429745	A	G	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	15813751	rs2011159	C	T	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.182;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	15906696	.	C	CT	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.684;SOR=1.459;set=HC	GT:AD:AF:DP	0/1:45,30:0.40:75
chr1	15965025	.	C	CTT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.77;ReadPosRankSum=-0.000;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	16011005	.	G	GGGC	2876.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.18;MQRankSum=0.509;QD=23.58;ReadPosRankSum=0.227;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:2,120:0.98:122
chr1	16047970	rs114598853	T	C	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	16065303	rs147907985	ACACACT	A	1213.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	16073524	rs201466858	C	CGA	12609.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=-22.204;QD=25.47;ReadPosRankSum=-0.364;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:2,493:1.00:495
chr1	16073525	rs114267265	C	T	12618.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=-22.158;QD=25.60;ReadPosRankSum=-0.236;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:2,491:1.00:493
chr1	16073527	rs199908593	T	TG	23028.73	.	AC=2;AF=1.00;AN=2;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=45.69;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr1	16095316	rs2271545	C	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	16096934	rs10927851	C	T	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr1	16097237	rs10803398	G	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	16101332	rs114077715	G	A	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	16248728	.	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.567;QD=0.81;ReadPosRankSum=1.132;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr1	16256007	rs848209	T	C	8364.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	16259616	.	G	C	6152.77	.	AC=2;AF=1.00;AN=2;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	16259813	rs848210	A	G	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	16265422	rs848214	A	G	8749.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	16271260	rs9661939	G	A	9923.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	16272250	rs848217	A	G	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	16358520	rs12131197	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	16359052	rs10927893	A	G	11883.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.06;ReadPosRankSum=-0.369;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:1,455:1.00:456
chr1	16361875	rs11807054	A	G	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.97;QD=26.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	16361916	rs11811753	G	A	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=55.09;MQRankSum=1.467;QD=11.13;ReadPosRankSum=1.600;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr1	16362621	rs2009044	G	A	11209.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=25.71;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr1	16370899	rs945394	G	A	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	16371067	rs2015352	G	T	11264.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.093;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=-0.098;QD=25.78;ReadPosRankSum=-0.824;SOR=0.387;set=HC	GT:AD:AF:DP	1/1:1,436:1.00:437
chr1	16371932	rs6604909	A	C	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	16372003	rs6604910	G	C	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	16372283	rs6604911	T	G	2812.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.336;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.84;ReadPosRankSum=1.416;SOR=0.478;set=HC	GT:AD:AF:DP	1/1:9,126:0.93:135
chr1	16373124	rs5257	A	G	10644.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.16;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr1	16373199	rs35820664	CCTT	C	18354.73	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.66;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	16373282	rs2095540	A	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	16374533	rs2014562	G	C	10051.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr1	16374622	rs2863440	C	G	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	16374656	rs2902490	A	G	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	16374994	rs1889788	C	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.37;QD=27.80;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	16375063	rs1889789	CA	GC	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=58.65;QD=45.72;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	16376191	rs7367494	C	T	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	16376230	rs59006537	A	AT	11659.73	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	16376232	rs59924562	A	T	11668.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=44.54;SOR=1.637;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	16376238	rs34589727	TC	T	8608.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	16376278	rs7365182	G	A	13386.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr1	16376319	rs7368151	T	C	16011.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=-0.107;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:2,631:1.00:633
chr1	16376458	rs7368166	T	C	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	16377108	rs35480349	G	C	19770.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	1/1:0,772:1.00:772
chr1	16379008	rs2050522	C	T	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	16380196	rs5253	T	C	11412.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.583;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=-0.135;QD=25.19;ReadPosRankSum=1.688;SOR=0.329;set=HC	GT:AD:AF:DP	1/1:1,452:1.00:453
chr1	16381718	rs1414498	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	16382877	rs7517792	A	G	53016.77	.	AC=2;AF=1.00;AN=2;DB;DP=1187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=44.97;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,1179:1.00:1179
chr1	16382880	rs7512547	T	A	53114.77	.	AC=2;AF=1.00;AN=2;DB;DP=1203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=44.45;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,1195:1.00:1195
chr1	16383267	rs12728542	A	G	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	16383329	rs138507185	T	TC	5103.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=15.983;MLEAC=2;MLEAF=1.000;MQ=56.43;MQRankSum=0.186;QD=24.90;ReadPosRankSum=-0.107;SOR=3.398;set=HC	GT:AD:AF:DP	1/1:11,194:0.95:205
chr1	16383336	rs12746138	G	C	8936.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.98;QD=40.99;SOR=3.793;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	16383348	rs61769892	C	T	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.82;QD=25.25;SOR=2.772;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	16383448	rs10803415	A	C	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.90;QD=25.52;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	16383515	rs12402924	C	T	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.91;QD=26.94;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	16383581	rs1057844	G	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.44;QD=37.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	16383605	rs1057845	A	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.83;QD=34.60;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	16383668	rs6660218	T	G	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.41;QD=26.03;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	16383742	rs1057857	C	G	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	16383808	rs28690440	G	C	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	16385175	rs17853748	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.37;MQRankSum=-1.051;QD=7.03;ReadPosRankSum=0.057;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	16385797	rs3978478	C	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.57;QD=27.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	16385815	rs2019456	G	A	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.91;QD=26.59;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	16385980	rs3884058	G	A	11141.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=23.21;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr1	16386008	rs2863452	T	C	9314.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr1	16386247	rs2095543	T	C	113.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.80;QD=22.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	16386305	rs372070031	G	GC	470.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.898;MLEAC=1;MLEAF=0.500;MQ=51.29;MQRankSum=2.999;QD=22.42;ReadPosRankSum=0.050;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr1	16386416	rs9442230	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.28;QD=25.45;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	16386447	rs11576236	G	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.90;QD=24.69;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	16388534	rs2863454	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.26;QD=38.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	16388556	rs2863455	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	16388580	rs3978467	C	T	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	16388646	rs2863456	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.39;QD=25.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	16388737	rs3978468	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	16388766	rs3978469	C	T	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	16388852	rs202226162	AC	A	4101.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	16388875	rs34673312	GCCC	G,GC	3957.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.55;MQRankSum=-0.108;QD=32.44;ReadPosRankSum=1.703;SOR=0.535;set=HC	GT:AD:AF:DP	1/2:2,26,94:0.21,0.77:122
chr1	16388904	rs2902491	A	T	5449.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=41.92;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	16388909	rs2863457	T	C	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=42.16;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	16389026	rs2863458	T	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	16451767	rs3754334	G	A	11586.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr1	16456176	rs3768294	G	A	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	16458814	rs2291805	C	T	12278.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr1	16459745	rs10907223	G	A	10697.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	16460339	rs6669624	G	A	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	16460541	rs6603855	T	C	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	16460840	rs6603856	G	A	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	16464260	rs11260742	T	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	16528218	rs6676143	G	T	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	16528469	rs58225172	GCCTACCCTAGGGAC	GTACCCTAGGGAC,G	3362.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=94;set=Intersection	GT:AF:DP	1/1:1.00:76
chr1	16528472	rs200243292	TACCCTAGGGACC	T	3355.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=1.550;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	16528484	.	C	T	827	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=26;MQ=60.0;NF=15;NR=26;PP=827;QD=21.0188100621;SC=CCCTAGGGACCCATGTCTGCC;SbPval=0.58;Source=Platypus;TC=43;TCF=16;TCR=27;TR=41;WE=16528492;WS=16528459;set=Platypus	GT:AD:AF:DP	1/1:2,41:0.95:43
chr1	16528843	rs1693540	A	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	16533022	rs221052	C	T	17929.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.21;ReadPosRankSum=-1.692;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:2,682:1.00:684
chr1	16543175	rs221024	A	C	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	16559541	rs3738631	C	G	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	16562968	rs6603850	C	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	16577908	rs12069239	G	C	8442.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	16583030	rs3830890	C	CA	589.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	16621183	rs1007150	C	T	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	16693725	rs142845497	T	TG	1927.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.60;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	16725330	rs41307763	G	A	9316.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	16731646	rs3106498	T	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	16736132	rs4661746	T	C	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	16736546	rs10907226	C	T	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	16776743	rs35074812	G	GT,GTT	669.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=47;set=Intersection	GT:AF:DP	1/1:0.94:36
chr1	16778265	rs279782	G	T	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	16802890	rs696095	G	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	16803267	rs156846	T	C	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	16862273	rs76517011	C	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.221;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.019;MLEAC=1;MLEAF=0.500;MQ=50.19;MQRankSum=-0.615;QD=1.54;ReadPosRankSum=-0.504;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:100,20:0.17:120
chr1	16862294	.	A	G	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=11.407;MLEAC=1;MLEAF=0.500;MQ=48.78;MQRankSum=-1.142;QD=2.91;ReadPosRankSum=-1.940;SOR=1.578;set=HC	GT:AD:AF:DP	0/1:194,49:0.20:243
chr1	16862296	rs1759227	G	C	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:145,118:0.45:263
chr1	16862340	rs200564364	G	A	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=741;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.02;MQRankSum=-7.419;QD=2.05;ReadPosRankSum=0.446;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:592,144:0.20:736
chr1	16862454	rs71248115	T	G	14019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=1580;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=47.86;MQRankSum=-14.189;QD=8.87;ReadPosRankSum=-4.738;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:861,719:0.46:1580
chr1	16862461	rs145386412	T	A	36005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;ClippingRankSum=0.000;DB;DP=1619;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=47.78;MQRankSum=-24.149;QD=22.24;ReadPosRankSum=-1.448;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:540,1079:0.67:1619
chr1	16862472	rs200621127	G	C	4374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DB;DP=1672;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=47.78;MQRankSum=-10.112;QD=2.62;ReadPosRankSum=1.586;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:1313,359:0.21:1672
chr1	16862502	rs141629643	A	G	29538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=1893;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=48.73;MQRankSum=-16.868;QD=15.64;ReadPosRankSum=1.442;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:552,1337:0.71:1889
chr1	16862566	rs77197089	G	A	3954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.509;ClippingRankSum=0.000;DB;DP=1842;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=50.79;MQRankSum=-5.668;QD=2.16;ReadPosRankSum=-0.109;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:1469,363:0.20:1832
chr1	16862708	rs1762987	T	G	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.340;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=21.218;MLEAC=1;MLEAF=0.500;MQ=49.97;MQRankSum=-6.151;QD=18.83;ReadPosRankSum=-3.248;SOR=2.481;set=HC	GT:AD:AF:DP	0/1:47,56:0.54:103
chr1	16862712	rs61769538	G	T	1770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=17.393;MLEAC=1;MLEAF=0.500;MQ=50.56;MQRankSum=-6.278;QD=21.59;ReadPosRankSum=-3.405;SOR=2.594;set=HC	GT:AD:AF:DP	0/1:40,42:0.51:82
chr1	16862714	rs61769539	T	G	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.891;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=14.423;MLEAC=1;MLEAF=0.500;MQ=51.08;MQRankSum=-6.365;QD=20.89;ReadPosRankSum=-2.849;SOR=2.336;set=HC	GT:AD:AF:DP	0/1:40,37:0.48:77
chr1	16862732	.	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.635;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=13.682;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-5.083;QD=4.67;ReadPosRankSum=0.047;SOR=3.532;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr1	16863229	rs114249125	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.158;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=32.188;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-13.796;QD=0.30;ReadPosRankSum=-1.967;SOR=4.854;set=HC	GT:AD:AF:DP	0/1:235,15:0.06:250
chr1	16863233	rs115519831	A	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.857;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=47.958;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-15.210;QD=0.49;ReadPosRankSum=-3.410;SOR=5.652;set=HC	GT:AD:AF:DP	0/1:255,23:0.08:278
chr1	16863238	rs71642021	T	C	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.371;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=64.161;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-14.992;QD=0.89;ReadPosRankSum=-2.751;SOR=6.260;set=HC	GT:AD:AF:DP	0/1:294,27:0.08:321
chr1	16863257	.	A	G	1622.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.278;ClippingRankSum=0.000;DP=506;ExcessHet=3.0103;FS=17.234;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-15.183;QD=3.23;ReadPosRankSum=-5.831;SOR=2.292;set=HC	GT:AD:AF:DP	0/1:432,71:0.14:503
chr1	16863258	rs140926795	C	A	110.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.475;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=11.004;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-9.223;QD=0.22;ReadPosRankSum=-5.327;SOR=2.186;set=HC	GT:AD:AF:DP	0/1:469,37:0.07:506
chr1	16863259	rs114741004	T	G	3396.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.847;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=25.473;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-18.866;QD=6.65;ReadPosRankSum=-8.637;SOR=2.446;set=HC	GT:AD:AF:DP	0/1:397,114:0.22:511
chr1	16863286	rs146804457	T	C	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.307;ClippingRankSum=0.000;DB;DP=876;ExcessHet=3.0103;FS=2.738;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-8.623;QD=0.64;ReadPosRankSum=-3.886;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:753,121:0.14:874
chr1	16863304	rs61769542	T	C	20684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=1070;ExcessHet=3.0103;FS=2.452;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-16.752;QD=19.39;ReadPosRankSum=-5.503;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:548,519:0.49:1067
chr1	16863308	rs112689425	G	T	21560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=1107;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=56.04;MQRankSum=-16.486;QD=19.53;ReadPosRankSum=-3.473;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:561,543:0.49:1104
chr1	16863313	rs76539488	C	T	6686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;ClippingRankSum=0.000;DB;DP=1147;ExcessHet=3.0103;FS=4.325;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-12.156;QD=5.86;ReadPosRankSum=-1.793;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:753,389:0.34:1142
chr1	16863314	rs74927161	A	G	22505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=1158;ExcessHet=3.0103;FS=4.060;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-16.017;QD=19.49;ReadPosRankSum=-1.120;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:570,585:0.51:1155
chr1	16863328	rs61769543	T	G	16278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.152;ClippingRankSum=0.000;DB;DP=1323;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-14.244;QD=12.32;ReadPosRankSum=1.447;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:587,734:0.56:1321
chr1	16863352	rs61769544	C	T	18117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.198;ClippingRankSum=0.000;DB;DP=1381;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=-12.806;QD=13.16;ReadPosRankSum=3.948;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:548,829:0.60:1377
chr1	16863398	rs61769545	A	C	6209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.983;ClippingRankSum=0.000;DB;DP=870;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-6.300;QD=7.15;ReadPosRankSum=1.009;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:516,353:0.41:869
chr1	16948473	rs446948	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.712;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.890;QD=3.85;ReadPosRankSum=-1.370;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:79,30:0.28:109
chr1	16948473	.	CC	TG	154	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=26;MQ=58.75;NF=11;NR=7;PP=154;QD=11.5259930479;SC=AAGTCCTCCTCCTGGGCTGCC;SbPval=0.75;Source=Platypus;TC=65;TCF=36;TCR=29;TR=18;WE=16948482;WS=16948463;set=Platypus	GT:AD:AF:DP	0/1:47,18:0.28:65
chr1	16948474	rs2781579	C	G	2375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-0.755;QD=21.60;ReadPosRankSum=-2.253;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:25,85:0.77:110
chr1	16969246	rs11260857	G	A	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:246,130:0.35:376
chr1	16969381	rs9727604	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:321,137:0.30:458
chr1	16972134	rs4661404	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-8.450;QD=0.31;ReadPosRankSum=1.982;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:248,36:0.13:284
chr1	16973198	rs368927391	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-11.930;QD=0.09;ReadPosRankSum=1.954;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:393,57:0.13:450
chr1	16973519	rs2501762	G	A	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=50.43;MQRankSum=-3.417;QD=0.84;ReadPosRankSum=1.484;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:602,102:0.14:704
chr1	16973919	rs141898836	A	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.18;MQRankSum=-4.082;QD=1.36;ReadPosRankSum=0.217;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:312,69:0.18:381
chr1	16973996	rs200256873	A	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:115,50:0.30:165
chr1	16974010	rs201140718	G	C	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:86,30:0.26:116
chr1	16974021	rs142740321	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-3.418;QD=0.57;ReadPosRankSum=-1.576;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:73,13:0.15:86
chr1	16974256	.	G	C	907.77	.	AC=1;AF=0.500;AN=2;DP=129;set=Intersection	GT:AD:AF:DP	0/1:86,43:0.33:129
chr1	16974592	rs201212576	C	T	2451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=1138;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-14.754;QD=2.17;ReadPosRankSum=0.960;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:896,232:0.21:1128
chr1	16974637	rs16854791	T	C	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-2.859;QD=1.48;ReadPosRankSum=1.147;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:656,139:0.17:795
chr1	16974662	rs28460410	C	A	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=6.318;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-2.107;QD=1.18;ReadPosRankSum=1.174;SOR=1.305;set=HC	GT:AD:AF:DP	0/1:552,99:0.15:651
chr1	16974817	rs199598697	C	G	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr1	16974869	rs4570422	G	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:58,71:0.55:129
chr1	16975045	rs55763726	G	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.238;ClippingRankSum=0.000;DB;DP=931;ExcessHet=3.0103;FS=6.311;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-14.792;QD=1.00;ReadPosRankSum=-10.459;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:788,140:0.15:928
chr1	16975202	rs28602904	T	C	3822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.532;ClippingRankSum=0.000;DB;DP=1135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=-15.294;QD=3.37;ReadPosRankSum=1.792;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:852,281:0.25:1133
chr1	16975230	rs2761535	G	C	16746.77	.	AC=1;AF=0.500;AN=2;DB;DP=1085;set=Intersection	GT:AD:AF:DP	0/1:315,768:0.71:1083
chr1	16975689	rs201913540	G	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.454;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=10.337;MLEAC=1;MLEAF=0.500;MQ=46.82;MQRankSum=-5.530;QD=1.61;ReadPosRankSum=-1.580;SOR=1.882;set=HC	GT:AD:AF:DP	0/1:122,23:0.16:145
chr1	16976032	rs2483047	A	C	3934.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:468,232:0.33:700
chr1	16976539	rs199931165	A	G	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:185,61:0.25:246
chr1	16976585	rs1135350	C	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.02;MQRankSum=-7.915;QD=1.69;ReadPosRankSum=-0.379;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:464,100:0.18:564
chr1	16976641	rs1057417	C	T	4257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0.000;DB;DP=1167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.36;MQRankSum=-6.242;QD=3.65;ReadPosRankSum=2.123;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:993,174:0.15:1167
chr1	16976649	rs1057333	C	T	4222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.499;ClippingRankSum=0.000;DB;DP=1202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.13;MQRankSum=-5.990;QD=3.51;ReadPosRankSum=2.563;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:1024,178:0.15:1202
chr1	16976679	rs1065528	G	A	18266.77	.	AC=1;AF=0.500;AN=2;DB;DP=961;set=Intersection	GT:AD:AF:DP	0/1:147,814:0.85:961
chr1	16976681	rs3175284	G	T	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=935;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.72;MQRankSum=-4.249;QD=1.22;ReadPosRankSum=0.643;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:798,137:0.15:935
chr1	16976772	rs79425189	G	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.552;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=5.866;MLEAC=1;MLEAF=0.500;MQ=48.64;MQRankSum=-2.948;QD=0.60;ReadPosRankSum=0.329;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:179,26:0.13:205
chr1	16976786	rs201445230	G	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=50.41;MQRankSum=-2.939;QD=0.52;ReadPosRankSum=-2.852;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:86,14:0.14:100
chr1	17017675	rs2743471	C	A	12435.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr1	17022952	rs557690	C	A	6442.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.132;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=25.27;ReadPosRankSum=-0.979;SOR=0.256;set=HC	GT:AD:AF:DP	1/1:1,254:1.00:255
chr1	17023126	rs2610633	C	G	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=25.52;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	17023511	rs563144	C	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	17029257	rs12125112	T	C	6275.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.62;QD=26.48;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	17034250	rs61773400	C	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.57;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	17044511	rs2773185	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	17044695	rs2773186	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	17083652	rs113710576	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=49.90;MQRankSum=-0.476;QD=6.67;ReadPosRankSum=-0.393;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	17083671	rs1057420	C	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=48.61;MQRankSum=0.191;QD=4.49;ReadPosRankSum=0.551;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	17083685	rs3197973	C	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=48.61;MQRankSum=0.191;QD=5.71;ReadPosRankSum=0.072;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	17083776	rs56318124	C	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=42.16;MQRankSum=0.265;QD=2.90;ReadPosRankSum=1.489;SOR=2.815;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr1	17083778	rs28455793	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=40.50;MQRankSum=-0.531;QD=17.40;ReadPosRankSum=-0.943;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	17083807	rs9286084	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.99;QD=25.23;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	17083919	rs143067724	G	A	1025.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.468;MLEAC=2;MLEAF=1.000;MQ=46.58;MQRankSum=1.072;QD=25.64;ReadPosRankSum=-1.349;SOR=0.633;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr1	17084006	rs2446544	C	T	2574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.79;MQRankSum=-7.753;QD=17.17;ReadPosRankSum=2.134;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:43,107:0.71:150
chr1	17084021	rs2446543	C	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:136,108:0.44:244
chr1	17084670	rs199536872	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.41;QD=25.69;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	17084968	rs2761533	G	C	6106.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:184,293:0.61:477
chr1	17085165	rs2490828	G	C	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.42;QD=27.75;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	17085412	rs872964	C	T	6949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.168;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=6.130;MLEAC=1;MLEAF=0.500;MQ=46.63;MQRankSum=1.528;QD=12.37;ReadPosRankSum=1.122;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:219,343:0.61:562
chr1	17085427	rs2002186	T	C	21212.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.74;QD=37.22;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,570:1.00:570
chr1	17085502	rs2329006	T	C	2560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=46.36;MQRankSum=-4.095;QD=12.37;ReadPosRankSum=-1.784;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:91,116:0.56:207
chr1	17085542	rs2261754	G	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.74;MQRankSum=-3.211;QD=5.91;ReadPosRankSum=1.664;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:87,42:0.33:129
chr1	17085564	rs3851921	A	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:71,52:0.42:123
chr1	17085589	rs371449598	AGCGCTG	A	644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.103;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.209;MLEAC=1;MLEAF=0.500;MQ=50.56;MQRankSum=-6.514;QD=5.97;ReadPosRankSum=-1.100;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:85,23:0.21:108
chr1	17085671	rs3863806	C	G	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=50.02;MQRankSum=-6.044;QD=9.96;ReadPosRankSum=3.189;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:69,29:0.30:98
chr1	17085677	rs3863805	G	A	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.980;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.07;MQRankSum=-6.186;QD=10.42;ReadPosRankSum=3.295;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:67,30:0.31:97
chr1	17085712	rs3863803	C	T	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=49.72;MQRankSum=-2.382;QD=7.88;ReadPosRankSum=-0.618;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:53,41:0.44:94
chr1	17085795	rs1057379	G	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=5.622;MLEAC=1;MLEAF=0.500;MQ=54.03;MQRankSum=-2.368;QD=0.77;ReadPosRankSum=-2.018;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:137,25:0.15:162
chr1	17085834	rs2005622	G	T	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.45;QD=26.53;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	17085908	rs1805293	C	G	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.455;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=16.657;MLEAC=1;MLEAF=0.500;MQ=56.91;MQRankSum=-6.806;QD=1.93;ReadPosRankSum=-4.847;SOR=1.869;set=HC	GT:AD:AF:DP	0/1:406,84:0.17:490
chr1	17085995	.	G	GC	5462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.624;ClippingRankSum=0.000;DP=598;ExcessHet=3.0103;FS=5.029;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-1.906;QD=9.62;ReadPosRankSum=1.436;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:330,238:0.42:568
chr1	17086052	rs1057286	T	C	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	17086085	rs200532237	G	GC	1335.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.46;QD=33.39;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	17086941	rs28462251	C	T	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.492;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=21.574;MLEAC=1;MLEAF=0.500;MQ=51.31;MQRankSum=2.291;QD=3.41;ReadPosRankSum=-2.707;SOR=1.696;set=HC	GT:AD:AF:DP	0/1:240,73:0.23:313
chr1	17087072	rs79486936	G	A	5909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-7.095;QD=9.38;ReadPosRankSum=-0.432;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:330,300:0.48:630
chr1	17087262	rs2926375	C	T	7197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-2.113;QD=10.42;ReadPosRankSum=0.029;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:328,363:0.53:691
chr1	17087365	rs2446556	C	G	19947.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,735:1.00:735
chr1	17087459	rs11576695	A	G	3834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=811;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-0.057;QD=4.75;ReadPosRankSum=0.222;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:563,244:0.30:807
chr1	17087465	rs11260924	G	A	5082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=803;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-3.130;QD=6.35;ReadPosRankSum=0.413;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:510,290:0.36:800
chr1	17087521	rs11589598	G	A	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:478,179:0.27:657
chr1	17087541	rs113982165	GGTGCT	G	5164.73	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:386,153:0.28:539
chr1	17087582	rs10907280	G	A	5691.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:179,265:0.60:444
chr1	17087593	rs12145944	C	T	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=52.24;MQRankSum=-11.688;QD=4.75;ReadPosRankSum=-0.404;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:286,120:0.30:406
chr1	17087682	rs9725203	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr1	17090902	.	A	AT	1625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.314;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=47.75;MQRankSum=-4.168;QD=6.11;ReadPosRankSum=3.669;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:188,78:0.29:266
chr1	17091129	rs61769748	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=1.465;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	17197609	rs150993810	T	C	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-7.164;QD=0.60;ReadPosRankSum=-5.413;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:502,45:0.08:547
chr1	17197610	rs200754171	G	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-6.935;QD=0.73;ReadPosRankSum=-5.057;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:503,45:0.08:548
chr1	17197615	rs146936960	C	A	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-5.720;QD=1.32;ReadPosRankSum=-5.034;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:513,63:0.11:576
chr1	17197619	rs113661539	A	G	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-6.246;QD=0.77;ReadPosRankSum=-3.088;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:514,57:0.10:571
chr1	17197666	rs74055933	T	C	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.107;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-11.014;QD=3.30;ReadPosRankSum=-3.007;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:391,131:0.25:522
chr1	17197690	rs72642967	T	G	5190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.789;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=2.551;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-15.597;QD=12.82;ReadPosRankSum=-0.518;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:244,161:0.40:405
chr1	17197694	rs72642969	G	A	5733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.805;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=4.652;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-15.222;QD=14.78;ReadPosRankSum=0.737;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:234,154:0.40:388
chr1	17197710	rs114564385	G	C	3868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.341;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-15.587;QD=13.11;ReadPosRankSum=6.070;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:188,107:0.36:295
chr1	17197715	rs202012907	G	A	3902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-15.378;QD=14.40;ReadPosRankSum=5.452;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:166,105:0.39:271
chr1	17197721	.	C	T	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=-8.186;QD=2.27;ReadPosRankSum=2.234;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:210,29:0.12:239
chr1	17197722	.	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-6.162;QD=0.21;ReadPosRankSum=1.961;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:199,33:0.14:232
chr1	17197725	rs75030124	C	G	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=55.84;MQRankSum=-7.878;QD=2.62;ReadPosRankSum=1.701;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:193,29:0.13:222
chr1	17197736	.	G	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-7.355;QD=3.31;ReadPosRankSum=0.669;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:163,28:0.15:191
chr1	17197758	rs143100028	C	G	2604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.899;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-9.420;QD=22.85;ReadPosRankSum=-0.253;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:47,67:0.59:114
chr1	17197764	rs150815118	G	C	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.418;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-8.626;QD=19.54;ReadPosRankSum=0.708;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:44,43:0.49:87
chr1	17197766	.	G	A	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=54.64;MQRankSum=-5.542;QD=5.29;ReadPosRankSum=-2.203;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:84,20:0.19:104
chr1	17197771	rs139655267	G	A	2289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=54.14;MQRankSum=-8.463;QD=24.89;ReadPosRankSum=-0.113;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:38,54:0.59:92
chr1	17197777	rs149102001	T	G	1392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=-7.602;QD=16.98;ReadPosRankSum=0.362;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:35,47:0.57:82
chr1	17197779	rs138448635	G	A	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.334;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.289;MLEAC=1;MLEAF=0.500;MQ=53.47;MQRankSum=-3.298;QD=7.86;ReadPosRankSum=0.118;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr1	17197781	.	CG	C	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.39;MQRankSum=-5.502;QD=4.55;ReadPosRankSum=-1.076;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr1	17198518	rs141922545	T	G	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.80;QD=26.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	17248500	rs6683035	A	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	17248532	rs6586566	A	G	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	17249395	rs6586567	A	G	11519.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=0.074;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:3,445:0.99:448
chr1	17251055	rs9435703	C	T	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	17266357	rs112681315	C	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	17281003	rs2076606	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	17287414	rs2273113	T	C	136.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	17295679	rs4920574	T	C	3966.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	17297289	rs9435656	C	T	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17299006	rs36118977	G	GC	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.153;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr1	17299014	rs6661019	A	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:4,53:0.93:57
chr1	17301672	rs761423	T	C	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	17301780	rs761422	A	G	5194.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	17303589	rs2235932	C	T	7804.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	17303792	rs4920588	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17312743	rs3170740	C	T	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	17313157	rs2076605	G	A	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	17313343	rs9435659	G	A	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	17313654	rs761421	C	T	9235.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	17314942	rs9435662	G	A	8393.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	17319011	rs2076603	G	A	12144.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr1	17323449	rs9435736	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17359676	rs1022580	C	A	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	17371152	rs12073028	T	C	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	17380497	rs2746462	G	T	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	17395480	rs2076599	G	A	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	17395521	rs2076598	G	A	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	17396498	rs2076596	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	17396703	rs2076595	T	C	11187.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.723;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=-1.234;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:2,440:1.00:442
chr1	17398066	rs875219	G	C	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	17398069	rs875218	T	C	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	17401283	rs3818041	C	T	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	17402116	rs3818035	G	T	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	17402135	rs3818034	T	C	7068.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	17402159	rs3818033	G	A	8592.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	17402255	rs3818032	C	T	13357.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr1	17402347	rs2647205	C	T	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	17402418	rs3818031	A	G	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	17405809	rs2057096	G	A	8313.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	17405916	rs2057095	C	T	5385.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	17405949	rs2057094	C	T	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	17406015	rs2057093	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	17406045	rs2057092	C	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	17410364	rs1883913	G	A	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	17418883	rs2647184	A	G	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	17418894	rs2273111	A	G	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	17419066	rs11203298	T	C	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	17422226	rs2076609	C	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	17422302	rs2076608	T	C	7076.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	17431618	rs11203300	A	G	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.61;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	17431681	rs2647172	C	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=28.96;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	17550225	rs3003481	T	C	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	17551034	rs2293915	A	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	17555316	rs2977233	C	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	17555508	rs2977234	G	T	6528.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	17596980	rs66624969	C	CA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.357;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr1	17604437	rs72646786	C	T	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	17681277	rs6683201	T	C	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	17683041	rs1635567	T	C	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	17683157	rs1635566	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17685174	rs2428735	T	C	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	17689954	rs2477150	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	17707739	rs1204898	T	C	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	17707798	rs10788668	C	T	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	17708349	rs7556072	G	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	17718418	rs72637462	C	T	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	17718671	rs10709483	AG	A	6350.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	17720391	rs6678552	G	A	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	17720439	rs6695849	T	C	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	17720615	rs10458537	A	C	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	17720686	rs34075690	AG	A	4382.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	17721388	rs6691485	C	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	17721695	rs369334834	GTTT	G	1067.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=27.38;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:1,38:0.97:39
chr1	17721721	rs147310450	TGA	T	1163.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	17723476	rs61476146	C	CCA	585.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17723739	rs12129196	G	A	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	17725157	.	C	CA	183.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.31;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	17725158	.	C	CCCACCCA	590.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	17725358	rs2244936	C	G	7863.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	17739586	rs942457	G	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	17739820	rs1075535	T	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	17764795	rs368819016	C	A	6019.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.104;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=0.908;SOR=0.305;set=HC	GT:AD:AF:DP	1/1:1,234:1.00:235
chr1	17914846	rs1193343	C	T	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	17929980	rs1193338	C	G	6854.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	17942506	rs75911665	C	T	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	17981184	rs35255680	A	C	9089.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:1,363:1.00:364
chr1	17982559	rs867984	G	A	5495.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	17991052	rs6695710	T	C	9997.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr1	17991196	rs11203432	A	G	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	18016162	rs74061959	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	18016402	rs13376020	A	G	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	18016441	rs13376112	T	C	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	18016491	rs13375581	G	A	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	18434904	rs34958868	A	ATAC	878.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	18702848	rs138302343	C	T	13866.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=2.313;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:2,546:1.00:548
chr1	18702988	rs10796450	T	C	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	18807897	rs2992755	C	G	12575.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr1	18807953	rs11261022	C	A	17734.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,662:1.00:662
chr1	18808292	rs2992753	C	A	15595.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,603:1.00:603
chr1	18808465	rs3007718	T	A	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	18808526	rs2992752	A	C	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	19027239	rs2743201	A	G	22008.77	.	AC=2;AF=1.00;AN=2;DB;DP=873;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,849:1.00:849
chr1	19029546	rs1416464	A	G	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	19062643	rs55742214	C	A	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	19071182	rs3915506	A	G	365.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.912;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=2.970;QD=30.48;ReadPosRankSum=1.404;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	19071183	rs3915505	A	G	1111.50	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.78;MQRankSum=2.970;QD=35.85;ReadPosRankSum=1.404;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr1	19071191	.	G	GATGGATGGATGGATAA	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=2.970;QD=29.73;ReadPosRankSum=1.401;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	19168478	rs35542368	G	GA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.825;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	19175846	rs28374389	T	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	19186129	rs9701796	G	C	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	19186260	rs9700646	C	T	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	19186320	rs9701803	G	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	19199473	rs28700162	T	A	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	19200908	rs28529092	G	C	10127.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	19201184	rs6665917	G	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	19201956	rs2230708	A	G	11248.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr1	19202770	rs7550822	T	C	7801.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	19202896	rs2230707	G	A	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	19202917	rs7550938	T	C	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=42.31;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	19202926	rs2230706	T	C	6117.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=44.33;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	19204154	rs6426813	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	19208145	rs112548638	G	GGGTTGCCT	6314.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	19208944	rs28566028	A	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	19209543	rs6426611	A	G	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	19215834	rs941495	T	C	10535.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr1	19282981	rs1886768	A	C	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	19408380	rs12164540	T	C	8101.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	19410974	rs371493331	G	A	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	19411129	rs1043905	A	G	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	19413420	rs2274008	T	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	19420097	rs111797750	G	T	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	19420392	rs1106839	G	A	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	19426199	rs2236377	G	A	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	19427132	rs114522389	C	T	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	19433449	rs6426677	A	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	19440107	rs9661719	A	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	19440383	rs113498244	G	C	9135.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr1	19441410	rs35307650	G	A	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	19447693	rs34871324	C	T	4494.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.014;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=0.737;SOR=0.267;set=HC	GT:AD:AF:DP	1/1:1,177:0.99:178
chr1	19448608	rs7535738	C	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	19451176	rs35466973	A	T	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	19472223	rs148936054	C	A	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	19476307	.	G	GA	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.793;QD=1.74;ReadPosRankSum=1.131;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:151,44:0.23:195
chr1	19482658	rs115769886	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	19483209	rs10799710	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	19486804	.	G	GA	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.302;QD=3.08;ReadPosRankSum=-0.403;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:87,36:0.29:123
chr1	19486839	rs946419	T	C	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	19491857	rs3748757	T	C	6182.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,248:0.99:250
chr1	19499835	rs951908	G	C	6685.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	19500729	rs6694521	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	19503817	rs116192111	C	T	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	19504062	rs35444108	T	C	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=24.24;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	19510394	rs3762396	A	G	8948.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr1	19513570	.	T	TTA	856.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.844;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.56;ReadPosRankSum=0.000;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr1	19545893	rs34350799	G	A	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	19554099	rs7515397	T	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	19557713	rs2275403	G	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	19565344	rs709683	C	G	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	19568722	rs710866	G	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	19568972	rs710865	A	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	19571633	rs9426799	C	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	19581226	rs735026	G	A	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	19581442	rs112100063	G	GA,GAA	1292.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.856;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.52;ReadPosRankSum=-0.216;SOR=1.259;set=HC	GT:AD:AF:DP	1/2:5,17,41:0.27,0.65:63
chr1	19581467	rs1774081	C	T	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	19582563	rs1557133	G	A	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	19583400	rs1774075	A	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	19583684	rs1774074	C	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	19583725	rs1738017	T	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	19584004	rs1042380	G	A	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	19584578	rs12121472	T	C	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	19585207	rs2294939	G	A	5594.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	19609254	rs1738025	T	C	11998.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr1	19611241	rs1738023	T	C	13097.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.51;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr1	19611303	rs200088249	C	G	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	19633981	rs192483544	A	C	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	19635112	rs201135912	G	A	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	19638309	rs2227295	A	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.80;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	19650982	rs41264065	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	19651102	rs41264067	A	G	17189.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:2,678:1.00:680
chr1	19651277	rs41264069	G	A	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	19651300	rs41264071	T	C	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	19651330	rs41264073	C	T	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	19652063	rs11558390	G	A	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,213:1.00:214
chr1	19652127	rs199660210	AGTT	A	4970.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=44.38;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	19652128	.	GT	G	1096	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=1;MGOF=18;MMLQ=28;MQ=59.74;NF=0;NR=28;PP=1096;QD=40.8939607096;SC=GCAGGGGGCAGTTGTGGGGGG;SbPval=1.0;Source=Platypus;TC=28;TCF=0;TCR=28;TR=28;WE=19652143;WS=19652118;set=Platypus	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	19652135	.	G	GGT	4969.73	.	AC=2;AF=1.00;AN=2;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=45.18;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	19652684	rs41264077	G	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	19653256	rs7553611	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	19654023	.	A	ATCCCTCCC,ATCCC	2712.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=78;set=Intersection	GT:AF:DP	1/1:1.00:63
chr1	19746332	rs41264091	A	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	19746385	.	C	T	335.77	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	19923313	rs4912130	T	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	19935118	rs138778783	T	TA	1405.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	20020993	rs4370779	AC	GT	9846.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,373:0.99:375
chr1	20234011	rs142232593	G	C	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	20234270	rs41264119	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	20395401	rs11573185	C	A	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	20411300	rs2020883	GT	G	1935.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.59;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	20442054	rs584367	T	C	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	20442691	rs3736979	C	T	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	20446170	rs11298078	GT	G	3904.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=25.03;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	20446233	rs201333622	CAT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-0.086;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr1	20490518	rs6426616	T	C	7279.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	20501442	rs10916718	T	C	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	20503710	rs10753483	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	20645086	rs35480773	T	A	18988.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:0,726:1.00:726
chr1	20668864	rs368745611	TCTC	T	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.520;QD=1.38;ReadPosRankSum=0.654;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:75,9:0.11:84
chr1	20829560	rs2641114	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	20915531	rs602950	A	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	20915589	rs3215400	TC	T	5914.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	20915701	rs2072671	A	C	11890.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr1	20940258	rs488991	T	A	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	20964328	rs2298298	A	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	20971875	rs3131712	G	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	20971980	rs11379920	C	CA	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.138;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	20972048	rs3131713	G	A	5150.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	20977221	rs686658	A	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	20978832	rs6893	T	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	20979307	rs11428148	G	GT	5191.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	20980880	rs607254	G	A	7834.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	20981806	rs592851	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	20982631	rs4704	G	A	10173.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	20987873	rs537816	G	C	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	20992606	rs630484	G	T	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr1	20992819	rs631357	G	C	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	21024901	rs522496	C	T	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	21030902	rs900039	G	T	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	21040079	rs10799661	C	A	6953.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	21042300	rs554111	C	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	21043913	rs604659	T	C	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	21043926	rs604645	T	C	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	21044161	rs601329	A	G	10242.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr1	21044219	rs601392	A	C	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	21050958	rs592060	C	T	11159.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,425:1.00:425
chr1	21083867	rs58898561	T	TA	36.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=-0.431;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	21083870	.	T	A	45.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.63;ReadPosRankSum=-0.431;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	21099846	rs589755	A	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	21102502	rs11459072	C	CA,CAA	249.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=18;set=Intersection	GT:AF:DP	1/1:1.00:14
chr1	21143774	rs12126757	A	T	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.87;QD=26.72;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	21167404	rs2230573	A	G	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	21174429	rs17449243	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	21175855	rs7525082	C	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	21179969	rs7542882	G	A	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	21188871	rs17409373	C	A	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	21219050	rs6685306	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	21295864	rs2271115	C	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	21307743	rs74258939	AT	A	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.684;QD=1.68;ReadPosRankSum=1.862;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr1	21325360	rs885363	C	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	21327637	rs1395508	C	T	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	21377314	rs6426663	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	21494634	rs61779121	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	21502724	rs34197724	TGCC	T	7592.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:8,185:0.96:193
chr1	21502956	.	G	T	3077.77	.	AC=2;AF=1.00;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	21554319	rs6426676	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	21582699	rs187713219	G	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	21671943	rs2072654	T	G	4559.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.143;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.38;ReadPosRankSum=1.698;SOR=0.232;set=HC	GT:AD:AF:DP	1/1:1,186:0.99:187
chr1	21751142	rs150916531	A	G	1472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.972;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.720;MLEAC=1;MLEAF=0.500;MQ=46.75;MQRankSum=-6.715;QD=13.39;ReadPosRankSum=-0.284;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:48,62:0.56:110
chr1	21751214	rs72476501	G	A	5872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.311;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=48.36;MQRankSum=-9.718;QD=8.95;ReadPosRankSum=-2.983;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:350,306:0.47:656
chr1	21752682	rs71512992	G	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=47.79;MQRankSum=-6.077;QD=7.67;ReadPosRankSum=0.724;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:37,28:0.43:65
chr1	21752766	rs144829292	A	G	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.91;MQRankSum=-6.799;QD=7.70;ReadPosRankSum=0.644;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:57,45:0.44:102
chr1	21752782	rs140348908	T	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=46.82;MQRankSum=-6.569;QD=7.99;ReadPosRankSum=0.100;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:54,44:0.45:98
chr1	21752830	rs139145324	C	T	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=45.56;MQRankSum=-2.068;QD=8.15;ReadPosRankSum=0.659;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	21753562	rs146549873	A	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.64;QD=28.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	21754996	rs12024079	C	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.66;QD=25.43;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	21755055	rs12024104	C	A	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.91;QD=30.42;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	21755135	rs41302024	T	G	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	21755347	rs41310392	C	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.22;QD=25.21;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	21755453	rs3856177	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.84;QD=29.13;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	21755539	rs3855556	C	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	21755756	rs56343055	G	C	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	21755867	rs7522332	A	G	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr1	21755906	rs3738922	G	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	21756008	rs3894725	G	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	21756069	rs7532750	G	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	21795388	rs1827293	A	G	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr1	21799489	rs1971327	T	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	21799823	rs1971328	A	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	21800185	rs7520015	T	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	21801346	rs7531217	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	21804815	rs7535654	T	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	21805730	rs2316504	A	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	21806619	rs3820294	T	C	324.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.50;QD=36.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	21806621	rs3820293	T	G	324.78	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.31;QD=54.13;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	21806624	rs3820292	A	G	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.31;QD=40.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	21806667	rs12043777	C	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	21806710	rs12034222	T	G	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.75;QD=25.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	21808159	rs71512991	G	A	3136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=47.66;MQRankSum=-12.063;QD=7.28;ReadPosRankSum=0.576;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:257,174:0.40:431
chr1	21808207	rs146564096	A	C	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.878;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=47.22;MQRankSum=-11.804;QD=8.53;ReadPosRankSum=-0.052;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:141,104:0.42:245
chr1	21808223	rs145079058	T	C	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=-8.885;QD=8.98;ReadPosRankSum=-0.055;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:79,57:0.42:136
chr1	21809750	rs202069483	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.23;QD=32.90;SOR=5.486;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	21880818	rs142935969	C	CATAT	99.25	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	21887290	rs1767430	C	A	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=2.256;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	21887294	.	G	A	2098.77	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.64;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	21889635	rs1780316	T	C	16079.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,643:1.00:643
chr1	21890464	rs1767428	A	G	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.36;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	21896767	rs1256328	C	T	10433.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:1,413:1.00:414
chr1	21925108	rs2794278	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	21929260	rs829368	A	G	8626.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	21932530	rs1767443	C	A	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	21935884	rs34097078	GA	G	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=0.548;QD=10.03;ReadPosRankSum=0.279;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:12,42:0.78:54
chr1	21939741	rs1256282	G	C	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	21943820	rs2275360	G	A	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	21946396	rs12134357	T	C	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	21946415	rs1681255	G	A	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	21948936	rs829415	G	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	21953436	rs829412	A	G	19650.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,756:1.00:756
chr1	21961339	rs10799706	A	T	13629.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr1	22013561	rs829420	C	A	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	22013771	rs10493008	G	A	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	22032472	rs11426922	A	AT	463.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	22050649	rs2275668	C	A	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	22063149	rs10753517	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	22082923	rs10458384	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	22082967	rs35545280	CA	C	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.880;QD=7.61;ReadPosRankSum=0.104;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:38,95:0.71:133
chr1	22109370	rs10917042	G	A	12042.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr1	22141206	rs10917051	A	C	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	22149935	rs897467	T	C	8515.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	22150257	rs3736357	C	T	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	22157689	rs3736355	G	A	13151.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr1	22158363	rs4654771	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	22160148	rs7547731	C	T	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	22167885	.	A	G	5080.77	.	AC=2;AF=1.00;AN=2;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	22168216	rs7556412	C	T	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	22174600	rs3767138	A	G	6191.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:3,242:0.99:245
chr1	22177119	rs61777200	A	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	22179673	rs12049614	T	C	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	22180548	rs12117402	T	C	14692.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr1	22183471	rs12024579	A	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	22183739	rs2305562	A	G	16760.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,650:1.00:650
chr1	22186234	rs10917056	A	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	22191454	rs897471	G	A	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	22199081	rs2501266	A	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	22199245	rs2229482	C	T	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	22199821	rs2454290	G	A	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	22200067	rs2247741	A	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	22200082	rs2445136	T	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	22200835	rs2445135	C	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	22202109	rs2501265	C	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	22203259	rs2454295	A	G	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	22205408	rs2454294	T	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	22205466	rs2454293	T	C	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	22206649	rs989994	T	C	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	22206898	.	T	C	11167.77	.	AC=2;AF=1.00;AN=2;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr1	22206942	rs1874793	G	A	11201.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	22207235	rs1874792	T	C	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	22207804	rs139046040	ACCCAGGGTGGCAG	A	6209.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:3,250:0.99:253
chr1	22208030	rs921847	C	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	22211222	rs4654994	T	C	9218.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	22215088	rs2445140	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	22216574	rs2254358	C	A	11762.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:1,459:1.00:460
chr1	22216604	rs2254357	C	G	10245.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr1	22217108	rs2501260	G	A	25804.77	.	AC=2;AF=1.00;AN=2;DB;DP=1003;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,991:1.00:991
chr1	22304428	rs12074015	CC	GT	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	22304463	rs12058649	A	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.11;QD=31.74;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	22307340	rs7528228	C	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	22307358	rs7528300	C	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	22307538	rs7528405	C	T	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	22310080	rs10799723	G	A	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	22310139	rs10733031	T	G	9522.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.53;QD=44.92;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	22310145	rs10733032	C	T	9663.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.16;QD=44.33;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	22310262	rs10733033	G	C	8326.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	22310411	rs28468423	A	G	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.72;QD=42.27;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	22310411	.	AGA	GGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=24;MQ=44.31;NF=18;NR=58;PP=2947;QD=20;SC=CACCAAGACCAGACCTTGTAC;SbPval=0.84;Source=Platypus;TC=88;TCF=27;TCR=61;TR=76;WE=22310421;WS=22310401;set=Platypus	GT:AD:AF:DP	1/1:12,76:0.86:88
chr1	22310413	rs7549398	A	G	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.93;QD=48.08;SOR=2.026;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	22310662	rs6426735	G	T	32263.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;ClippingRankSum=0.000;DB;DP=1240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.043;QD=26.15;ReadPosRankSum=-0.087;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:1,1233:1.00:1234
chr1	22310674	rs7538207	C	T	30576.77	.	AC=2;AF=1.00;AN=2;DB;DP=1177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.07;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,1173:1.00:1173
chr1	22310725	rs3820287	G	C	18856.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.87;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,729:1.00:729
chr1	22310824	rs1803531	T	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	22313161	rs1803530	T	C	8528.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.85;QD=25.31;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	22313197	rs34963341	C	A	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	22315738	rs4655006	C	T	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.42;QD=26.08;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	22329062	rs143337942	CC	GT	6920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.171;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=5.041;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.74;MQRankSum=-8.260;QD=17.26;ReadPosRankSum=1.056;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:220,181:0.45:401
chr1	22329414	rs10917107	G	A	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	22333595	rs3820290	G	A	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	22336277	rs3820285	C	G	10336.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr1	22336371	rs3806297	C	A	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	22405379	.	C	CT	324.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.06;ReadPosRankSum=0.253;SOR=3.020;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	22405398	rs2072921	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr1	22408106	rs2501282	G	A	6578.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	22447148	rs12756110	G	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	22453842	rs6678992	T	C	7327.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	22453975	rs2235527	C	G	10230.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr1	22454001	rs2235526	T	C	7388.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr1	22592949	rs76727629	A	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	22818139	.	A	AT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.159;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr1	22835677	rs209729	A	G	6628.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	22837586	rs34404742	CT	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.915;QD=2.03;ReadPosRankSum=0.433;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:35,20:0.36:55
chr1	22837849	rs209727	C	T	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	22846452	rs7551801	C	G	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	22846709	rs209720	G	A	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	22848972	rs61769198	A	C	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	22925292	rs664340	C	G	12279.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr1	22970642	rs15940	C	T	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	22987958	rs10580	A	G	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	23101688	rs1561624	T	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	23101708	rs138464253	T	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	23107811	rs71020449	TA	T	400.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=-0.982;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:10,40:0.80:50
chr1	23108089	rs2817904	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	23219493	rs309472	T	C	13112.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr1	23664511	rs11586100	T	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	23688933	rs2849028	A	G	7775.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	23693422	rs2849025	T	C	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	23696152	rs665977	G	A	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	23710805	rs605468	A	G	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	23713952	rs676363	T	G	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	23720260	rs2486078	T	G	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	23724183	rs2275355	C	T	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	23735241	rs1198423	G	T	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	23743581	rs2156087	C	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	23751140	rs71514235	G	T	14476.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,561:1.00:561
chr1	23755513	rs1198430	T	C	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	23758499	rs72661455	T	A	38.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.57;MQRankSum=-0.000;QD=3.88;ReadPosRankSum=-0.115;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	23765472	rs1767148	A	G	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	23810658	rs71514236	G	A	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	23836364	rs2075993	A	G	4598.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	23847464	rs2075995	C	A	5789.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	23885498	rs11574	T	C	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	23908221	rs10634856	C	CTT	286.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=1.313;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr1	23955186	.	T	TTTATTATTATTATTATTATTA,TTTATTATTATTATTATTATTATTA	2749.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.01;QD=59.78;SOR=3.258;set=HC	GT:AD:AF:DP	1/2:0,8,38:0.17,0.83:46
chr1	23965517	rs61777309	G	A	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	23965704	rs10917403	A	C	7280.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	23965829	rs10917404	C	T	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	23966837	rs1317329	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	23966894	rs3072132	T	TAAG	1986.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	24018277	rs10917413	C	G	8868.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:1,340:1.00:341
chr1	24082269	rs61355731	C	CA	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.515;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=13.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.585;SOR=1.979;set=HC	GT:AD:AF:DP	0/1:90,35:0.28:125
chr1	24106510	rs3831910	A	AT	1278.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	24122986	rs760941	C	T	7124.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.467;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=3.700;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=-0.719;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:1,285:1.00:286
chr1	24124801	.	C	CT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.989;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr1	24133612	rs1018396	G	A	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	24134721	rs719400	T	C	6528.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	24143932	rs2076344	A	G	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	24180806	.	T	TA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.804;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr1	24186460	.	A	AT	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=5.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.133;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:79,19:0.19:98
chr1	24200903	rs2229586	G	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	24200921	rs2229585	T	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	24200969	rs2229584	T	C	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	24200983	rs2229583	C	T	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	24201094	rs2229581	G	C	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	24201109	rs2229580	C	T	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	24201262	rs2502993	A	G	15919.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr1	24201357	rs4649124	A	G	9086.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	24201448	rs3003336	C	T	9321.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	24201643	rs2501431	G	A	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	24201919	rs2502992	TT	CC	9968.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	24255844	.	C	CTAT	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.73;ReadPosRankSum=-0.432;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	24288476	rs72540327	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	24294249	rs146630384	C	T	127.90	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.10;QD=25.58;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	24294587	rs145191744	G	A	41.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.86;QD=13.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	24383919	.	T	C	3752.77	.	AC=2;AF=1.00;AN=2;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=27.00;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	24400584	rs6660949	G	C	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	24400633	rs10903083	C	G	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	24416059	rs4393101	T	C	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	24417415	rs6700245	T	C	14772.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:0,589:1.00:589
chr1	24418768	rs7556176	T	C	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	24419496	rs4233050	A	G	9785.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr1	24421474	rs6678540	G	A	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	24421950	rs4319261	C	G	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	24434595	rs11249170	T	C	8113.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	24454688	rs16829204	C	T	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	24460797	rs17852649	T	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	24463854	rs41268137	C	T	5250.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	24484441	rs946671	A	G	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	24485518	rs10751769	T	C	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	24485813	rs4649194	T	C	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	24486218	rs112101640	T	TTTG	1719.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.87;QD=40.95;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	24513768	rs4090311	G	A	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	24513928	.	G	GGGGGA	331.74	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=36.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	24663184	rs34637004	T	C	19296.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:4,760:0.99:764
chr1	24671418	rs116396279	A	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	24927561	rs4553122	T	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	24969973	.	ACC	A	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.20;ReadPosRankSum=2.580;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr1	24989762	rs4649011	G	T	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	25098245	rs9332415	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	25098341	rs7548438	C	T	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	25153692	rs4649022	G	A	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	25254317	rs7517302	C	T	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	25256444	rs71514255	G	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	25350186	rs416365	G	C	190.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	25570550	rs5773124	A	AT	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.764;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr1	25611035	rs2301153	G	C	7991.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	25678002	rs66744254	TA	T	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.930;QD=11.06;ReadPosRankSum=0.469;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr1	25678238	rs3093616	T	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.223;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	25780668	rs34006994	C	T	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	25780889	rs141203814	A	ATG	1014.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	25780893	rs61775167	A	G	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	25785451	rs35530120	A	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.778;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	25889342	rs10687390	CAG	C	3634.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;MQ=60.37;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr1	25889422	rs12096438	C	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	25889632	rs6687605	T	C	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	25889672	rs6688931	G	A	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	25890050	rs6661159	A	G	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	25890189	rs28969504	A	G	13641.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr1	26085048	rs11321223	AG	A	4760.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	26090072	rs807270	A	G	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	26098107	rs2072747	G	A	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	26098333	rs807264	G	A	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	26107688	rs807273	C	A	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	26109237	rs12567324	A	G	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	26110065	rs3820514	A	G	8070.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	26110143	rs3767877	G	A	14886.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr1	26110298	rs116631146	G	A	5350.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	26127020	rs13373825	G	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	26127425	rs6659086	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	26131654	rs7349185	G	A	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	26136282	rs147587542	C	T	30483.77	.	AC=2;AF=1.00;AN=2;DB;DP=1175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,1162:1.00:1162
chr1	26138136	rs760598	C	A	18893.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	1/1:1,728:1.00:729
chr1	26138262	rs760597	T	C	10603.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr1	26139137	rs10902685	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	26139392	rs3738451	A	G	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	26139444	rs10751726	G	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	26139919	rs6676509	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	26140573	rs2294228	C	A	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr1	26146884	rs984412	C	G	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	26150023	rs11247758	C	T	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	26152666	rs6598923	T	C	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	26152758	rs6598924	A	G	8332.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	26314625	rs2257255	G	A	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	26357178	rs368362104	AC	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-2.039;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr1	26357656	rs2736831	C	A	20894.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,809:1.00:809
chr1	26357855	rs2802321	A	G	7733.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr1	26358752	rs5773143	T	TA	3837.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	26365374	rs4659404	T	G	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	26365549	rs2997452	C	T	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	26372144	rs6686190	A	G	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	26392824	rs35123100	C	A	5690.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	26496370	rs2232646	C	T	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	26520292	rs12138368	G	T	8257.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	26524706	rs9970046	A	G	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	26527304	rs12121284	T	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	26527310	rs12118976	C	G	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.97;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	26527809	rs1889755	AG	CA	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.18;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	26527884	rs41310785	G	A	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.397;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	26527951	rs6657616	G	A	6525.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	26528922	rs10902720	C	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	26529121	rs6691747	G	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	26566187	rs12134756	G	A	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	26597435	rs4659419	G	A	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,188:0.99:189
chr1	26601385	rs3795685	G	A	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	26608811	.	TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	T,TCCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	1013.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=267;set=Intersection	GT:AF:DP	0/1:0.18:239
chr1	26608814	rs6672357	A	G	3557.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=7.263;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=1.588;QD=27.58;ReadPosRankSum=1.560;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:42,87:0.67:129
chr1	26608825	.	TGGGGCCG	T	4051.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=10.161;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=1.547;QD=27.75;ReadPosRankSum=-1.408;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:42,104:0.71:146
chr1	26608835	.	ACCGGGACCGGGACTGGG	A	4034.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=11.972;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=1.549;QD=27.08;ReadPosRankSum=-1.738;SOR=1.269;set=HC	GT:AD:AF:DP	0/1:42,107:0.72:149
chr1	26609259	rs7522905	C	T	14648.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr1	26609307	rs6598952	G	T	13341.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.448;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.32;ReadPosRankSum=1.047;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,506:1.00:507
chr1	26610891	rs4332350	A	C	9659.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr1	26612042	rs11247898	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	26620846	rs3832184	C	CA	8176.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.85;QD=38.03;SOR=1.283;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	26627478	rs2276712	T	C	25525.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.065;ClippingRankSum=0.000;DB;DP=1015;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.35;ReadPosRankSum=1.696;SOR=0.225;set=HC	GT:AD:AF:DP	1/1:1,1006:1.00:1007
chr1	26629465	rs11803933	G	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	26646726	rs1071849	A	G	10991.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.112;QD=25.68;ReadPosRankSum=-0.483;SOR=0.467;set=HC	GT:AD:AF:DP	1/1:3,425:0.99:428
chr1	26646730	rs17645	A	G	18406.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=45.67;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	26648551	rs11247913	G	C	12581.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr1	26650550	rs11247915	C	A	7348.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	26670752	rs11247923	C	T	13598.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr1	26671084	rs12562454	G	T	6550.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	26671248	rs57268417	A	G	3914.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	26673076	rs11247924	G	A	12687.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr1	26673108	rs11247925	C	T	7780.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	26673220	rs11247926	A	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	26691286	rs144078461	CCCACCGAGCGCTGGGGTGCCCCAG	C	8809.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	26694059	rs75541583	G	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	26694245	rs10794531	T	C	5565.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	26698938	rs6703878	A	G	6060.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	26699051	rs6699091	C	A	14247.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr1	26699103	rs11584185	T	C	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	26699157	rs11247937	T	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	26700795	rs7520030	T	C	12539.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr1	26752992	rs4659441	T	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	26856462	rs11800553	T	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	26879920	rs4970490	T	C	8411.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	26883511	rs2229712	A	C	22311.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,855:1.00:855
chr1	26899671	rs2296399	C	G	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	26900735	rs282179	C	G	8696.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr1	26901090	rs11113	C	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	27320356	rs6689941	T	C	10831.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.970;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=1.697;SOR=0.427;set=HC	GT:AD:AF:DP	1/1:1,433:1.00:434
chr1	27426796	rs4266911	T	C	3154.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.86;ReadPosRankSum=1.331;SOR=0.324;set=HC	GT:AD:AF:DP	1/1:1,121:0.99:122
chr1	27427041	rs4418629	T	C	20965.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,809:1.00:809
chr1	27428321	rs6598870	T	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	27435976	rs3738689	C	G	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	27480757	rs34306208	A	G	11462.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr1	27609980	rs6670124	T	G	10008.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr1	27610043	rs41291064	T	C	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	27660340	rs12758154	T	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	27660568	rs35771571	G	A	10976.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	27661037	rs12565684	T	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	27661755	rs71294466	T	TGTA	3081.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	27676925	rs6702341	G	A	20478.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.09;ReadPosRankSum=-0.912;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,784:1.00:785
chr1	27679692	rs11247639	A	G	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	27679797	rs3813795	A	G	14909.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=0.871;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:2,589:1.00:591
chr1	27679954	rs1128918	G	A	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	27680292	rs8533	A	G	6502.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	27686063	rs7521552	G	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	27687366	rs35733093	C	G	7896.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.399;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=11.146;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.08;ReadPosRankSum=0.475;SOR=0.662;set=HC	GT:AD:AF:DP	1/1:3,325:0.99:328
chr1	27688633	rs1138294	G	A	8133.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	27696011	rs10218730	C	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	27875824	rs4908364	C	T	8860.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	27944000	rs1292089	T	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	27995077	rs56015130	G	T	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	28086955	rs10902671	C	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	28173614	rs12567719	C	G	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	28206588	rs12568383	T	C	10410.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr1	28209305	rs3766398	A	G	7234.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	28209362	rs3766399	T	C	14011.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.77;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	28209366	rs3766400	A	G	14123.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.41;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	28211650	rs1467464	T	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	28212272	rs11247705	G	A	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	28224312	rs2295367	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	28282292	rs3813803	T	C	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr1	28282819	rs4908381	T	C	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	28290231	rs4373781	C	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	28323718	rs3831309	TG	T	4221.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	28369279	rs2476547	G	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	28374836	.	G	GA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.970;QD=0.86;ReadPosRankSum=0.702;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr1	28422199	.	C	G	57.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.81;QD=19.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	28422847	rs2989472	C	T	12046.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr1	28422967	rs34450732	C	CT	7680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=13.24;ReadPosRankSum=0.948;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:129,451:0.78:580
chr1	28527011	rs1049504	A	G	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	28555426	rs567086	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	28555579	rs3753863	C	A	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	28559574	rs510803	C	G	11519.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr1	28559694	rs474597	A	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	28562676	rs12154	A	G	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	28563084	rs2078348	C	T	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	28564252	rs8559	A	G	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	28564279	rs9508	A	G	6560.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	28573293	rs67092542	G	GA	417.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:4,25:0.86:29
chr1	28832713	.	C	CT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=2.267;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:114,25:0.18:139
chr1	28834045	rs146544479	C	G	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.70;QD=41.61;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	28834052	rs140914793	T	G	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.10;QD=44.94;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	28835155	.	C	CA	434.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.18;QD=36.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	28835176	.	A	G	1456.77	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.16;QD=44.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	28835178	.	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.16;QD=44.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	28835181	.	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.16;QD=44.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	28858775	.	A	G	7231.77	.	AC=2;AF=1.00;AN=2;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	29016715	.	GT	G	47.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.858;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr1	29016716	rs6678913	T	G	230.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=1.115;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:56,38:0.40:94
chr1	29016717	.	T	G	55.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.356;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=5.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.600;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr1	29018316	.	T	TTTTA	664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.24;ReadPosRankSum=-0.478;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr1	29019724	rs4654365	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	29019731	.	A	AT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.458;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	29037240	rs11415888	C	CT	182.74	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	29063559	rs6697540	A	C	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	29070609	rs3835537	A	AG	277.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	29138975	rs1042114	G	T	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	29189597	rs2234918	C	T	20450.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,789:1.00:789
chr1	29345009	rs5773229	C	CTT	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	29345027	rs2985334	T	G	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	29439016	rs4654390	T	A	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	29475341	rs2230678	C	T	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	29475394	rs2230677	C	G	7851.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	29475648	rs2230679	T	G	6842.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	29529699	rs1062924	T	C	9762.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr1	29542435	rs2640469	C	G	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	29542637	rs1128400	A	G	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	29557224	rs2640466	C	T	18345.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr1	29563059	rs75011501	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	29602320	rs76920782	G	A	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	29609502	rs111595207	TG	T	4992.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=30.82;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	29609536	rs72884571	G	A	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	29611123	rs2281378	C	T	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	29618357	rs141442829	T	C	17774.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.950;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.026;QD=24.58;ReadPosRankSum=1.787;SOR=0.129;set=HC	GT:AD:AF:DP	1/1:2,721:1.00:723
chr1	29630455	rs2295061	C	T	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	29631236	rs3831903	C	CTA	39037.73	.	AC=2;AF=1.00;AN=2;DB;DP=905;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=44.92;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,869:1.00:869
chr1	29696060	rs56203706	T	C	6881.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	29842261	rs10915168	A	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=23.78;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	29842303	rs140458694	T	C	619.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;MQRankSum=-0.288;QD=20.66;ReadPosRankSum=2.374;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr1	31196255	rs45601237	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	31409726	rs56387244	CCT	C	1562.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	31415036	.	G	GTT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.88;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=-1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	31415039	rs374274848	TA	T	38.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.51;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr1	31415041	.	TA	T	37.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.19;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr1	31418119	rs12142833	C	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	31426815	rs2275741	A	G	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	31440921	rs4317854	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	31445932	rs2491135	C	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	31446069	rs146432389	TG	T	2851.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.33;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	31446071	rs368200818	T	A	2860.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.46;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	31465631	rs72657295	A	G	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	31478638	.	AAGAGAGAG	A,AAG	1928.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;MQRankSum=0.286;QD=32.15;ReadPosRankSum=-0.109;SOR=1.487;set=HC	GT:AD:AF:DP	1/2:2,15,43:0.25,0.72:60
chr1	31479005	rs1337046	C	T	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	31501755	rs4949331	T	C	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	31654940	rs2297959	C	T	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	31732390	rs6425725	G	A	100.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.03;ReadPosRankSum=1.221;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	31732602	rs59591825	CA	C	496.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-0.406;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:8,42:0.84:50
chr1	31733721	rs140443791	A	AAAG	878.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=41.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	31733782	rs10914338	T	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=27.06;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	31733926	rs12121460	A	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	31740668	rs3753374	C	T	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	31744168	rs3737755	G	A	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	31744505	rs113021667	A	AT	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.000;QD=14.02;ReadPosRankSum=0.307;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr1	31754511	rs4949374	G	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	31761989	rs1532859	G	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	31762374	rs1532858	C	T	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	31764693	rs12135540	G	A	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	31764713	rs142762586	C	CAAG	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	31764930	rs10733007	T	C	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	31838909	.	ATG	A	81	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=27;MQ=58.55;NF=0;NR=2;PP=81;QD=42.0;SC=ATATGTATGTATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=31838918;WS=31838899;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr1	31882582	rs4012494	G	GGCCTCA	1728.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr1	31883295	rs6701521	T	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	31886163	rs12042883	C	T	11832.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr1	31886750	rs142597528	G	GTCCC	6962.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;MQRankSum=0.538;QD=24.96;ReadPosRankSum=-0.867;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:2,277:0.99:279
chr1	31886833	rs10914377	T	C	9759.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=25.35;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	31897493	rs1320585	A	G	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	31899684	rs10454445	A	T	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	31899704	rs10454446	C	T	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	31902418	rs10047085	A	G	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	31905889	rs3050461	A	ACAG	7925.73	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:40,348:0.90:388
chr1	31906882	rs11587589	A	G	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	31907102	rs7417775	A	G	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	31971701	rs201612393	GC	G	1788.70	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:3,43:0.93:46
chr1	31971707	rs35567548	G	A	1919.80	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:3,49:0.94:52
chr1	32044589	rs12736080	T	C	43.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.46;MQRankSum=-1.383;QD=10.82;ReadPosRankSum=1.383;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,2:0.50:4
chr1	32044595	rs12750558	C	G	44.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.99;MQRankSum=-1.383;QD=11.05;ReadPosRankSum=1.383;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,2:0.50:4
chr1	32044601	rs28555101	G	T	44.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.99;MQRankSum=-1.383;QD=11.05;ReadPosRankSum=1.383;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,2:0.50:4
chr1	32044607	rs28402919	G	C	46.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.44;MQRankSum=-1.383;QD=11.52;ReadPosRankSum=1.383;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,2:0.50:4
chr1	32044609	rs28520749	G	A	47.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.44;MQRankSum=-1.383;QD=11.77;ReadPosRankSum=1.383;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,2:0.50:4
chr1	32044641	rs12753402	G	A	787.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr1	32045814	rs61778628	G	C	370.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;MQRankSum=0.000;QD=14.26;ReadPosRankSum=1.760;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr1	32052145	rs45611233	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	32119347	rs376725697	AAC	A	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.025;QD=2.33;ReadPosRankSum=0.149;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr1	32126135	rs41263967	C	T	6213.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	32127911	rs2271927	C	T	11237.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr1	32127953	rs2271928	G	A	10897.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	32128283	rs1568396	C	G	1632.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.954;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.77;ReadPosRankSum=1.413;SOR=0.602;set=HC	GT:AD:AF:DP	1/1:1,60:0.98:61
chr1	32133737	rs2292988	C	T	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	32136168	rs2292990	G	T	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	32145009	rs4949461	C	T	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	32148571	rs10737358	A	G	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	32155284	rs2297682	T	C	10622.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,418:1.00:418
chr1	32155911	rs6425780	G	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	32155929	rs2297681	G	A	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	32156722	rs10914467	G	A	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	32156869	rs10798884	A	T	19488.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=781;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.88;ReadPosRankSum=-1.485;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:2,751:1.00:753
chr1	32157531	rs2297676	T	C	9194.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.891;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	32158374	rs3818788	T	C	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	32159588	rs2275097	A	C	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	32160918	rs6656079	A	G	13321.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr1	32163950	rs2297674	G	C	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	32164206	rs2228550	T	G	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	32165495	rs2228552	G	T	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	32167526	rs1815465	G	C	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	32193647	rs1127100	T	C	11283.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,440:1.00:440
chr1	32194404	.	A	AAC	72.94	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.24;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	32196889	rs10914473	G	A	9440.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	32266026	rs552124	A	G	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	32658062	rs79952364	G	GGT	5564.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	32689857	rs589034	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	32692168	.	A	AT	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.071;QD=6.09;ReadPosRankSum=4.668;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr1	32768186	rs116702988	A	T	9127.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	32852607	rs74064101	G	A	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	32860161	rs547329	T	C	10111.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr1	33065947	rs704886	G	C	9288.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	33099798	rs704877	A	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	33117071	rs583114	T	G	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	33127730	rs1085416	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	33133968	rs2762904	T	C	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=25.58;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	33134989	rs359956	A	G	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	33160878	rs360042	C	T	9701.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr1	33161212	rs360041	T	C	23500.77	.	AC=2;AF=1.00;AN=2;DB;DP=947;set=Intersection	GT:AD:AF:DP	1/1:0,906:1.00:906
chr1	33231471	.	C	T	4273.77	.	AC=2;AF=1.00;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	33233323	rs360523	A	G	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	33234136	rs360522	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	33234153	rs3737993	G	A	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	33276424	rs4951787	G	A	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	33293748	rs10753266	T	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	33299816	rs4951773	A	T	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	33318561	rs702836	T	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	33318634	rs785274	G	A	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	33330432	rs1284368	A	G	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	33359262	rs185706490	G	C	21775.77	.	AC=2;AF=1.00;AN=2;DB;DP=841;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,830:1.00:830
chr1	33361339	.	C	T	1931.77	.	AC=2;AF=1.00;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	33402334	rs36040674	G	GA	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.045;QD=9.43;ReadPosRankSum=1.772;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chr1	33408155	rs114054157	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	33409551	rs194644	C	T	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	33415409	rs11408991	G	GT	2119.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	33415466	rs7545739	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	33430102	rs113840389	T	G	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.98;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	33480081	rs74435473	G	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	33485789	.	AACACACACACACACACACAC	A,AAC	5648.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=203;set=Intersection	GT:AF:DP	1/2:0.15,0.85:142
chr1	33490335	rs112825493	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	33497070	rs1012884	G	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	33497377	rs12095142	T	C	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	33547768	rs1871322	T	C	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:4,134:0.97:138
chr1	33549405	rs41265885	T	C	364.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	33558831	rs144010458	G	A	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	33560084	rs116505432	G	T	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	33560338	rs804428	A	G	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	33641932	rs604941	A	G	7731.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	33642152	rs643402	C	T	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	33646950	rs622407	A	G	7085.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	33741615	rs7514338	T	A	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	33742228	rs4475712	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr1	33746163	rs10914676	T	C	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	33760743	rs4641276	T	C	25990.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=1010;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.28;ReadPosRankSum=1.251;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:2,987:1.00:989
chr1	33777524	rs6679416	T	C	3414.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.187;QD=26.27;ReadPosRankSum=-1.386;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:2,128:0.98:130
chr1	33777669	rs201715975	TAGTC	T	33272.73	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,744:1.00:744
chr1	33778226	rs12563102	G	A	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	33778591	rs6664593	T	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	33832865	rs6425816	A	G	9257.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:1,353:1.00:354
chr1	33832933	rs10914692	G	A	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	33836796	rs7545416	C	G	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	33957152	rs4403594	T	G	8258.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	33960062	rs9943259	A	G	8648.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	33961147	rs3795420	T	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	33985353	rs2641959	C	G	9987.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr1	34038214	rs2641962	T	C	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr1	34038413	rs2794602	A	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	34043169	rs11291100	TC	T	3342.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	34052305	rs12727575	C	T	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	34052605	rs7526990	A	G	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	34158472	rs12757315	C	T	5918.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.97;SOR=1.281;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	34158482	rs12757320	C	T	6492.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.84;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	34189917	rs519370	C	T	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	34189957	rs11346874	AG	A	2623.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	34254108	rs34557326	C	CA	743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=7.02;ReadPosRankSum=1.223;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:44,62:0.58:106
chr1	34270498	rs10737374	G	A	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	34329897	rs911218	T	C	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	34330067	rs10379	A	C	12703.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr1	34631200	rs150837376	AAC	A	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.745;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:84,16:0.16:100
chr1	35135129	rs12026032	C	T	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	35135315	rs2147385	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	35183838	rs683589	A	C	1964.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	35183884	rs59601962	A	C	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	35184033	rs693582	C	T	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	35184084	rs693852	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	35227362	rs79193415	C	G	18706.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,711:1.00:711
chr1	35442461	rs78431129	C	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	35486072	.	T	TA	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-1.629;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr1	35885046	rs113288221	C	CT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=2.836;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:121,26:0.18:147
chr1	35925861	rs2819002	C	A	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	36203715	.	ATAT	AAT,A	2248.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.30;QD=45.89;SOR=0.902;set=HC	GT:AD:AF:DP	1/2:0,26,23:0.53,0.47:49
chr1	36203717	.	ATAT	A	55.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=-0.657;QD=0.96;ReadPosRankSum=-0.446;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	36203720	rs201555109	T	A	381.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.000;QD=9.31;ReadPosRankSum=2.225;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr1	36203722	rs199569493	T	A	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.000;QD=18.04;ReadPosRankSum=-1.614;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:8,33:0.80:41
chr1	36205166	rs577483	A	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	36213712	rs516992	G	T	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	36216835	rs535638	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	36282399	rs57835483	CA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=0.54;ReadPosRankSum=0.333;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:60,23:0.28:83
chr1	36282417	rs2791960	A	G,AG	3552.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.84;MQRankSum=0.000;QD=42.80;ReadPosRankSum=1.128;SOR=0.549;set=HC	GT:AD:AF:DP	1/2:1,60,22:0.72,0.27:83
chr1	36307412	rs147865378	CATAT	C,CAT	363.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.14;ReadPosRankSum=-1.200;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:5,7,7:0.37,0.37:19
chr1	36316381	.	C	CAA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.278;QD=2.29;ReadPosRankSum=1.650;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	36316418	rs11403763	C	CA	2140.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.021;QD=17.40;ReadPosRankSum=0.494;SOR=0.620;set=HC	GT:AD:AF:DP	1/1:14,109:0.89:123
chr1	36316571	rs4652895	A	C	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	36372409	.	G	GA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.383;QD=3.16;ReadPosRankSum=1.035;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	36553673	rs399393	A	G	9134.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:2,361:0.99:363
chr1	36553836	rs12131875	A	C	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	36563158	rs3738360	C	A	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	36565584	rs274753	C	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	36565617	rs274754	G	A	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	36602943	rs2231318	C	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	36752152	rs2242428	C	T	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	36752433	rs6425977	C	T	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	36762396	rs1566589	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	36767400	rs882799	C	T	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.412;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	36773819	rs11263871	C	G	6822.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	36787888	rs58971913	G	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	36788356	rs7536394	A	G	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	36807716	rs113074698	G	A	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	36884530	.	G	GA	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.159;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr1	36921371	rs1538634	G	T	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	36926445	rs3738839	C	T	4729.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	36927733	rs7065	G	A	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	37335458	rs577094	A	G	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	37335485	rs509284	A	G	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.91;SOR=2.425;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	37335494	rs577813	G	T	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.42;SOR=3.150;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	37626981	rs215756	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	37948212	rs215205	C	G	23712.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=959;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=1.074;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:2,935:1.00:937
chr1	37959450	rs215210	T	C	6814.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=24.78;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	37959470	rs215211	C	G	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	37961296	rs375693255	AAC	A	76.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.98;ReadPosRankSum=1.465;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	37961613	rs2294873	A	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	37975312	rs2036637	T	C	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	37980080	rs12126401	C	T	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	38006359	rs2174769	A	G	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr1	38018134	rs12144401	C	T	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	38046920	rs2360010	G	T	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	38049552	rs6426024	C	G	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	38049566	rs61776195	G	A	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	38052867	rs11420067	C	CA	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.292;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:105,34:0.24:139
chr1	38056595	rs3737749	A	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	38061572	rs6697632	G	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	38078300	rs4652964	A	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	38079517	rs36043533	T	G	10257.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr1	38262513	rs138525600	G	C	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	38292160	rs61778079	G	A	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	38292296	.	C	CT,CTT	171.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=132;set=Intersection	GT:AF:DP	0/1:0.24:110
chr1	38293753	rs77700694	G	A	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	38293845	.	T	TA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.469;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr1	38293992	rs9329568	C	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	38294006	rs111933241	C	T	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	38301250	rs3912368	A	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	38301476	rs3762359	G	A	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.73;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	38301478	.	C	CT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=1.784;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr1	38304469	.	C	CTTTTTT	204.84	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=34.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	38306356	rs61778082	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	38327982	rs3843	G	T	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr1	38328154	rs137861381	GAC	G	1889.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;QD=38.57;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	38329999	rs41311191	C	G	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	38332057	.	T	TTCTCTCTC	596.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=0.451;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:14,31:0.69:45
chr1	38338795	rs11488569	A	G	7647.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	38345896	rs2306427	A	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	38348506	rs41307896	G	A	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	38352849	rs2279261	G	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	38355520	rs61776667	A	G	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	38423853	rs9293	G	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	38425629	rs34993722	CAA	C	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=2.101;SOR=1.264;set=HC	GT:AD:AF:DP	0/1:9,31:0.78:40
chr1	38425724	rs17531342	T	C	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	38425895	rs28675056	T	C	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	38442547	rs10890216	G	A	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	38444749	rs7555461	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	38446513	.	CTT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.62;ReadPosRankSum=0.431;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	38447615	rs7533079	G	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	38449910	rs11210870	T	C	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	38450367	rs6680796	A	G	10537.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr1	38453576	rs10890285	A	C	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	38455389	rs3935867	C	T	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	38462898	rs4274021	T	A	5554.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	38462905	rs12724533	C	G	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.09;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	38463504	rs7366048	C	T	17394.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,658:1.00:658
chr1	38464639	rs4570384	C	G	13546.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr1	38488506	rs34251728	C	CT	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.436;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr1	39305403	rs17499125	C	T	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	39325063	rs1925678	T	C	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	39330399	rs3828041	G	A	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	39340862	rs874243	A	G	6996.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	39361569	rs12085567	G	A	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	39385086	rs7522863	A	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	39457016	rs11547138	C	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	39457293	rs111311750	T	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	39466626	rs11205525	A	G	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	39466786	rs10888613	C	G	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	39494666	rs35464164	C	CT	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.421;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr1	39494687	rs3768323	G	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	39550210	rs260972	C	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	39717566	rs2490948	T	C	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	39734598	rs16826022	G	C	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	39748921	rs2275188	G	A	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	39751172	rs72084357	C	CT	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.000;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	39758993	rs6688708	C	G	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	39763242	rs2275187	G	A	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	39766055	rs2275186	C	T	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	39796844	rs201626891	CTTTTTTTTTTT	C	1027.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.06;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	39806610	rs3116396	C	T	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	39812620	rs2490944	G	T	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	39812822	rs2761764	C	A	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	39816546	rs41270815	G	A	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	39894839	rs645061	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	39900058	.	CTT	C	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.165;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr1	39908701	rs75882914	G	A	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	39910257	rs78256423	A	T	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	39927507	rs783820	G	A	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	39929240	rs7554206	T	C	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	39957913	rs4660269	A	G	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	39958080	rs10888798	C	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.58;QD=25.80;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	39988084	rs6525	G	A	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.717;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=16.565;MLEAC=1;MLEAF=0.500;MQ=52.27;MQRankSum=-6.702;QD=3.02;ReadPosRankSum=-2.898;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:274,80:0.23:354
chr1	39988145	rs6524	T	C	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:204,160:0.44:364
chr1	40092089	rs2695320	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	40092900	.	A	AT	1541.73	.	AC=2;AF=1.00;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	40098328	rs784625	T	C	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	40149515	rs784633	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	40149551	rs11206617	G	C	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	40149642	rs784634	G	T	10498.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=3.746;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.38;ReadPosRankSum=-0.101;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:1,397:1.00:398
chr1	40149870	rs113763288	C	G	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	40149926	.	C	CCCCGGGTGCCTCGCCTCCTCCCAT	608.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	40150370	rs2746058	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	40204802	rs140607790	ACTT	A	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	40207169	rs497333	T	G	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	40229368	rs2463260	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=50.11;MQRankSum=-1.834;QD=12.96;ReadPosRankSum=-1.834;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	40229393	rs77290565	G	A	874.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.89;MQRankSum=-2.415;QD=22.43;ReadPosRankSum=-0.032;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr1	40229616	rs202005319	T	G	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.73;QD=24.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	40230336	rs76376226	C	G	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:152,149:0.50:301
chr1	40235277	rs374340047	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	40236074	rs230321	A	C	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.41;QD=26.81;SOR=1.360;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	40253726	rs230328	C	T	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.86;QD=25.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	40253768	rs60164088	C	CA	2106.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	40253770	rs4068800	C	T	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	40253786	rs230329	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	40310221	rs16826617	G	A	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	40319496	rs78738576	G	T	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	40319587	rs2294814	A	C	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	40349131	rs3845570	G	A	6708.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	40363054	rs3134614	G	C	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	40367590	.	ACAAGCGCGCCCCCCCCG	A	6179.73	.	AC=2;AF=1.00;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	40367610	.	C	A	6186.77	.	AC=2;AF=1.00;AN=2;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.70;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	40421251	rs1982873	C	T	9687.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	40525993	rs4660379	G	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.57;SOR=1.692;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	40526003	rs3122419	T	C	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.17;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	40528445	rs111329903	T	TTGTGTG	1133.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.79;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr1	40533266	rs11207440	T	G	20548.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=43.44;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr1	40533287	rs6665926	T	G	22044.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=40.82;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,540:1.00:540
chr1	40533315	rs6665933	T	G	22081.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=43.99;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,502:1.00:502
chr1	40533320	rs6665936	T	G	21785.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.08;QD=45.67;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr1	40533326	rs6665937	T	G	21048.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.03;QD=45.56;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr1	40533347	rs6665944	T	G	17256.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=45.06;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	40535645	rs4660157	G	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	40536074	rs58190778	C	CT	6426.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	40545964	rs3122428	T	G	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	40556922	rs3122439	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	40558256	rs4481840	C	G	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	40737516	rs6677717	T	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	40777884	.	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.524;QD=1.43;ReadPosRankSum=-0.664;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr1	40840270	rs10645094	T	TGC	955.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr1	40840272	rs28621835	T	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-2.370;QD=3.21;ReadPosRankSum=0.433;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr1	40840353	rs1003710	A	G	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	40859213	rs377617377	CT	C	339.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.667;QD=13.59;ReadPosRankSum=-0.972;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr1	40879808	rs209605	G	T	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	40881041	rs209606	C	G	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	40923019	rs2272994	G	A	10563.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr1	40955156	rs10789144	A	T	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	41224008	rs16827552	C	T	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	41228960	.	G	A	208	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=2;MGOF=6;MMLQ=25;MQ=60.0;NF=8;NR=6;PP=208;QD=17.3408008962;SC=ATATATATCTGTAGCTATATA;SbPval=0.6;Source=Platypus;TC=14;TCF=8;TCR=6;TR=14;WE=41228968;WS=41228950;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	41229122	rs35262530	G	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	41229180	rs4660455	G	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	41232194	rs34212676	T	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	41284366	rs2361660	G	C	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	41284406	rs2361659	A	G	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	41285087	rs4660468	T	C	18936.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,732:1.00:732
chr1	41327873	rs12081504	G	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	41453286	rs5773721	GT	G	3870.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:3,109:0.97:112
chr1	41456808	rs111518708	C	CT	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.999;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:77,34:0.31:111
chr1	41466550	rs12735455	T	A	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	41466681	rs140062309	CCT	C	2732.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	41466803	rs12718433	G	A	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	41473283	rs41308258	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	41475085	rs12144160	A	G	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	41483951	rs11209361	G	C	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	41485902	rs3738368	C	G	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	41486245	rs1138293	C	T	11751.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr1	41494222	rs11578697	G	T	9573.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr1	41540853	rs2011981	A	T	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	41540861	rs2011982	T	C	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	41541166	rs41269465	C	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	41582470	rs11209563	T	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	41582760	rs11209565	G	A	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	41618442	rs213768	A	T	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	41651697	rs12139225	G	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	41949595	rs2759256	G	A	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	41949628	rs2759257	A	C	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	41950312	rs2984691	T	C	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	41976017	rs678110	C	T	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	41976328	rs9439043	T	C	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	41978566	rs2991344	T	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	41978825	rs2483689	C	G	6589.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	41979156	rs615177	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	41983912	rs2810547	C	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	42046613	rs12132697	G	T	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	42046812	rs2810565	C	T	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	42048745	rs2810566	T	C	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	42049032	rs2984694	G	A	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	42049140	rs2475842	C	G	8692.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	42619152	rs2297567	C	A	4939.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	42619377	rs2297566	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	42629040	rs2232224	A	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	42657196	rs1139978	T	G	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	42664738	.	A	G	3906.77	.	AC=2;AF=1.00;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	42693597	rs343376	A	G	5888.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	42776699	rs200511460	G	GA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.283;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr1	42846786	rs11210626	G	C	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	42880516	rs1055055	T	C	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	42948562	.	G	GA	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-1.286;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr1	43002199	rs372826618	AAG	A	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=1.309;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:225,35:0.13:260
chr1	43076555	rs201279077	CTT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=0.451;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr1	43158943	rs144349068	CT	C	36.76	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	43212431	rs4660662	A	G	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,184:0.99:186
chr1	43212869	rs3738496	A	T	13311.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr1	43213499	rs3738499	C	T	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	43213797	rs3738500	A	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	43228189	rs2816593	T	A	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	43239395	rs2760075	G	A	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	43300921	rs4660673	C	G	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	43302971	rs1466548	C	G	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	43393245	rs11282849	G	GGGTGAGAAAT	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	43409179	rs12718444	G	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	43409364	rs34964576	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	43418026	rs2297972	C	T	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	43418056	rs3216016	AT	A	6854.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	43616646	rs16830421	C	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	43634619	rs142130646	G	A	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	43652369	rs6413971	T	C	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	43663376	rs513009	A	G	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	43672636	rs11210812	T	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	43675467	rs2453412	G	A	10310.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr1	43680855	rs4233492	G	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	43681184	rs612626	C	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	43699813	rs3820588	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	43699935	rs2477561	C	T	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	43699970	rs2484714	G	A	8897.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	43700140	rs2483688	A	G	12732.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.67;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,496:1.00:496
chr1	43738340	rs10890247	A	C	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	43771016	rs3831248	TA	T	15319.73	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr1	43771090	rs3120044	G	A	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	43773033	rs2275180	A	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	43774437	rs1467809	G	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	43779564	rs3120276	T	C	12412.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,484:1.00:484
chr1	43779724	.	T	TTG	5651.73	.	AC=1;AF=0.500;AN=2;DP=314;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:25,193:0.89:218
chr1	43779869	rs2991990	T	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	43782846	rs1198982	G	A	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	43825583	rs145443590	T	TTGAG	2471.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	43998397	rs11350891	GT	G	801.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr1	44035472	rs943513	G	A	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	44070691	rs17371903	A	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	44071221	rs631248	G	A	7035.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	44072420	rs539096	A	G	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	44075227	rs517622	T	C	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	44078384	rs499257	T	C	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	44078602	rs3791151	C	A	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	44079411	rs603542	T	C	5778.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.303;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=-0.908;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:1,228:1.00:229
chr1	44083110	rs571862	C	T	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.86;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	44083507	rs641365	T	C	10536.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr1	44083519	rs641351	G	A	9960.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr1	44084739	rs1143701	C	T	12376.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,479:1.00:479
chr1	44086080	rs568639	T	C	10576.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr1	44086831	rs1143702	C	T	13317.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.050;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=1.271;SOR=0.334;set=HC	GT:AD:AF:DP	1/1:1,524:1.00:525
chr1	44087496	rs673485	C	T	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	44121557	rs2274465	C	G	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	44303786	.	C	CA	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.752;QD=1.04;ReadPosRankSum=0.814;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:122,33:0.21:155
chr1	44363710	rs61770289	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	44365457	rs783304	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	44386305	rs3120802	C	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	44386615	rs3120803	A	G	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr1	44401384	rs2242637	A	G	8019.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	44426948	rs2906596	G	A	16735.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.123;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=0.957;SOR=0.291;set=HC	GT:AD:AF:DP	1/1:1,651:1.00:652
chr1	44442930	rs2428954	A	G	9884.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	44443459	rs2428953	G	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	44450737	rs2231283	C	G	5866.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	44451112	rs200144349	GGGA	G	50.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.095;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr1	44451113	.	GGA	G	90.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.981;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	44451114	rs371619921	GA	G	61.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.305;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	44451124	rs75761202	G	T	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.03;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	44455871	rs2231284	T	C	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	44457739	rs11376967	T	TC	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=31.62;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	44594966	rs2485653	G	A	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=1.581;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	44595113	rs2429051	G	C	12942.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr1	44595410	rs2485652	A	G	17459.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	44595426	rs2429050	G	A	17557.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr1	44595995	rs35084281	G	GC	1705.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	44788398	rs161721	A	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	45088629	rs28453885	G	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	45110690	rs145131553	C	T	11518.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr1	45139921	.	G	C	9035.77	.	AC=2;AF=1.00;AN=2;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	45166513	rs2355710	T	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	45169711	.	T	TA	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=1.300;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr1	45170012	rs12088087	A	G	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	45213335	rs140925941	G	A	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	45243566	rs140512155	A	G	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	45362992	rs263978	T	C	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	45470130	rs7528534	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	45472798	.	TTGTGTGTGTG	T,TTG	2007.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=67;set=Intersection	GT:AF:DP	1/2:0.19,0.81:52
chr1	45474157	rs2298006	G	A	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	45475566	rs6429552	A	G	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	45479874	rs6698485	G	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	45486581	rs998417	C	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	45504720	rs7551698	G	C	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	45524213	rs3738246	C	T	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	45671298	.	T	G	5204.77	.	AC=2;AF=1.00;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	45796269	rs3219493	G	C	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	45796354	rs3219492	G	T	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	45797505	rs3219489	C	G	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	45798555	rs3219487	T	C	20411.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:0,793:1.00:793
chr1	45805566	rs3219468	G	C	26338.77	.	AC=2;AF=1.00;AN=2;DB;DP=1114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,1033:1.00:1033
chr1	45813441	rs2298018	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	45813820	rs2153607	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	45864655	.	GAA	G	66.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=0.528;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	45864695	rs7532762	C	A	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	45887288	rs3790582	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	45961955	rs937290	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.13;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	45965307	rs12568144	G	A	9034.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr1	45965340	rs7546268	T	C	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	45973928	rs2275276	G	A	18955.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,743:1.00:743
chr1	45981512	rs2356559	T	C	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	46027355	rs512083	T	C	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	46050004	rs57257530	TTCGG	T	3297.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	46057144	rs2991981	A	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.34;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	46065998	rs3014211	T	C	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.96;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	46073489	rs2230657	G	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	46078630	rs2050376	A	G	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	46078854	rs2230658	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	46078884	rs2230659	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	46080530	rs2991985	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	46080947	rs1972410	A	C	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	46081940	rs2356581	T	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	46081960	rs2253862	C	T	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	46082431	rs2991988	C	A	3844.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.022;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=3.391;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=-0.715;SOR=0.521;set=HC	GT:AD:AF:DP	1/1:1,154:0.99:155
chr1	46085852	rs2275085	C	T	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	46085879	rs2275086	C	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	46086077	rs3014246	C	T	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	46086913	rs3014245	C	T	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	46087577	rs3014242	G	A	22261.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.241;ClippingRankSum=0.000;DB;DP=871;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=2.032;SOR=0.134;set=HC	GT:AD:AF:DP	1/1:2,858:1.00:860
chr1	46087879	rs3014241	A	G	7560.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	46089225	rs3014240	C	G	9350.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	46347874	.	A	T	34.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.195;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr1	46347875	rs56242896	A	T	327.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=0.251;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	46347878	rs201525530	AT	A	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=0.084;SOR=1.309;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	46347910	rs6665193	G	A	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	46379518	rs4256763	A	G	6380.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	46424964	rs4460582	G	A	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	46466721	rs11589562	T	C	11366.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr1	46476587	rs11211247	T	G	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	46485548	rs946529	G	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	46485562	rs946528	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	46487552	rs2275426	G	A	10169.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.02;SOR=1.434;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	46487560	rs946524	A	G	11478.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.14;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	46491635	rs785478	C	T	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	46493460	rs1707336	T	G	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	46495434	rs2236560	G	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	46496709	rs925524	A	G	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	46498375	rs1622208	A	G	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	46511487	rs2297883	G	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	46521517	rs785468	G	A	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	46521559	rs785467	A	T	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	46546208	rs1768803	T	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	46598269	rs1707304	C	A	21051.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.57;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr1	46598273	rs1707303	A	C	21257.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,487:1.00:487
chr1	46655158	rs6659553	T	C	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	46739974	.	AT	A	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=1.959;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.816;QD=1.31;ReadPosRankSum=0.464;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:87,31:0.26:118
chr1	46806393	rs41293273	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	46806429	rs41293275	A	T	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	46806480	rs17361749	C	T	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	46806550	rs41293277	C	T	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	46806703	rs10489769	A	G	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	46810405	rs79697925	TG	T	1745.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	46810670	rs17361763	T	C	9742.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	46810842	rs6684274	C	T	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	46812444	rs17357676	A	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	46812519	rs17361791	A	G	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	46818442	rs41294478	G	A	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	46818452	rs17413701	A	G	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	46818479	rs7515598	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	46818508	rs7529674	T	C	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	46826587	rs55887761	C	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	46827214	rs324414	A	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	46827485	rs1053624	C	T	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	46860237	rs72890727	G	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	46871986	rs324419	T	C	17518.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=1.058;SOR=0.942;set=HC	GT:AD:AF:DP	1/1:2,680:1.00:682
chr1	46877180	rs6662982	G	A	8609.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr1	47013180	rs10890404	A	G	8402.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	47013364	rs1258041	T	C	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	47015453	.	AAC	A	62.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr1	47016917	rs114820803	C	T	4259.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	47046465	rs60914701	AC	A	248.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	47059934	rs1258021	T	C	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	47060078	rs7556307	G	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	47075932	rs3818323	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	47078637	rs4660947	T	C	18682.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr1	47080665	rs11211328	C	T	6871.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	47080679	rs6671527	G	A	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	47080741	rs12029680	C	T	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	47099346	rs723333	C	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	47108828	rs736188	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	47110766	rs3215990	G	GC	2730.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=36.41;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	47118067	rs620913	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	47118096	rs2289446	C	A	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	47118168	rs2289447	C	T	9367.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	47118189	rs620431	G	T	10921.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.30;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	47124204	rs34308534	C	CA	515.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	47124479	rs611468	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=1.453;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	47130873	rs594118	A	G	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	47133811	rs11211337	T	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.791;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	47138444	rs616249	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	47138819	rs614486	T	G	20424.77	.	AC=2;AF=1.00;AN=2;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,760:1.00:760
chr1	47139103	rs1025806	C	T	11654.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr1	47154272	rs2304745	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	47155462	rs2241862	G	A	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	47182206	rs3737731	C	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	47351034	rs5003006	T	A	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	47351052	rs5003005	A	T	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.63;QD=28.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	47395973	rs1126743	G	A	5866.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	47398743	rs3890011	G	C	8615.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr1	47400059	rs71500102	A	G	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	47401424	rs2269231	A	T	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.96;QD=26.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	47402487	rs67512144	TTGTG	T,TTG	4740.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.268;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.591;QD=19.84;ReadPosRankSum=-0.058;SOR=0.591;set=HC	GT:AD:AF:DP	1/2:15,35,189:0.15,0.79:239
chr1	47550258	.	T	A	2369.77	.	AC=2;AF=1.00;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.67;QD=26.33;SOR=1.295;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	47571943	rs10534549	CT	C	575.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.638;QD=2.82;ReadPosRankSum=0.107;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:124,80:0.39:204
chr1	47611464	.	CC	TG	9422.77	.	AC=2;AF=1.00;AN=2;DP=217;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	47652870	rs10549554	CCTTGAG	CAG,C	4131.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=93;set=Intersection	GT:AF:DP	1/1:1.00:91
chr1	47652875	rs10549555	AGC	A	4294.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.18;SOR=3.708;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	47652877	.	CCT	ACA	2874	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=56;NR=9;PP=2874;QD=20;SC=TTCCCTTGAGCCTCAGGGGGA;SbPval=0.76;Source=Platypus;TC=92;TCF=76;TCR=16;TR=65;WE=47652887;WS=47652860;set=Platypus	GT:AD:AF:DP	1/1:27,65:0.71:92
chr1	47652879	rs60327556	T	A	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=3.375;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	47655816	rs2248907	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	47685455	rs927462	T	C	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	47717189	rs2758735	A	G	9403.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	47735280	rs2742104	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	47753405	rs12125261	G	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	47770786	rs6692734	T	A	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	47834209	rs35687416	G	T	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	47841038	rs3214951	G	GA	537.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	47841109	rs2253511	T	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	47842431	rs3125648	G	A	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	47883019	rs6666370	T	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.67;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	47883024	rs2820969	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	47904668	rs3046924	T	TCCGCAC	14734.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.62;MQRankSum=0.343;QD=45.76;ReadPosRankSum=1.680;SOR=0.486;set=HC	GT:AD:AF:DP	1/1:1,321:1.00:322
chr1	47904909	rs2405913	G	C	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	48260116	rs3738314	C	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	48694919	rs77352337	G	C	9431.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr1	48697733	rs212991	T	G	13594.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,520:1.00:520
chr1	48707838	rs705430	A	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	48771697	rs11801452	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	48866674	rs60149733	A	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	48877365	rs74640754	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	48902977	rs2261674	G	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.49;QD=28.44;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	49005351	rs60977321	C	T	6556.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	49113319	rs319953	T	C	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	49511424	rs3934240	A	G	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,236:1.00:237
chr1	50331725	rs10788920	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	50569923	rs75477051	A	T	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	50575675	rs148666401	CTG	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-1.921;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:128,23:0.15:151
chr1	50884778	rs2746610	G	A	1643.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.852;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=59.30;MQRankSum=-0.141;QD=23.48;ReadPosRankSum=1.752;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:1,69:0.99:70
chr1	50956212	rs149582773	C	CAAATACAGTGG	9690.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.45;SOR=1.516;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	50957509	rs1149790	A	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	51767912	rs375305601	GC	G	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.354;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=15.067;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.801;QD=2.15;ReadPosRankSum=-0.829;SOR=0.052;set=HC	GT:AD:AF:DP	0/1:120,28:0.19:148
chr1	51873951	rs1065754	G	A	6259.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	51905949	.	C	CTG	105	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=27;MQ=58.45;NF=0;NR=6;PP=105;QD=18.0;SC=TATACATGTACTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=17;TCF=4;TCR=13;TR=6;WE=51905960;WS=51905939;set=Platypus	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	52179818	.	G	GT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=2.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-1.959;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr1	52242432	.	CTT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=2.362;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr1	52293638	rs706495	G	A	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	52303005	rs12944	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	52402856	rs10888741	T	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	52402956	rs10888742	G	A	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	52403174	.	A	AT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=1.182;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr1	52489322	rs2783178	G	A	6933.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	52490418	rs4926906	C	T	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	52517412	rs7529324	A	G	9117.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	52729425	rs58847260	TC	T	1490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=7.850;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.428;QD=12.63;ReadPosRankSum=-1.239;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:28,90:0.76:118
chr1	52759048	.	CA	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.464;QD=3.91;ReadPosRankSum=-0.975;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	52820226	rs2820334	G	A	9199.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	52851729	rs78572338	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	52878300	rs4319263	T	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	52882406	rs6677047	A	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	52947711	rs17107242	T	C	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	52961339	rs56251001	C	T	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	53153432	rs443751	T	C	7958.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	53192187	rs269298	C	T	180.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	53255587	rs67389144	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.21;ReadPosRankSum=-0.976;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	53267474	.	G	GT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.320;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr1	53308665	rs532242	C	G	6674.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	53320274	rs480299	G	T	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	53323492	rs10788945	C	A	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	53333116	rs557847	A	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	53364976	rs576891	A	G	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	53387379	rs7552139	G	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	53540481	.	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	53543112	rs946590	C	G	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	53544439	rs1288388	G	A	29658.77	.	AC=2;AF=1.00;AN=2;DB;DP=1165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,1149:1.00:1149
chr1	53544597	rs1288389	T	C	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	53553702	rs1288400	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	53553754	rs1288401	T	C	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	53555783	rs1288403	A	C	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	53558270	rs1288406	A	G	8570.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr1	53559310	rs11206091	T	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	53571288	rs1288422	C	G	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	53574123	rs1769289	C	T	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	53600078	rs3737989	A	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	53720723	rs12116501	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	53793511	.	TGCA	T	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.292;QD=3.23;ReadPosRankSum=-1.294;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr1	53974987	rs10749691	G	T	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	53990321	rs541224	C	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	54331763	rs1883453	A	G	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	54344282	rs2272928	C	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	54375570	rs2235544	C	A	6620.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.573;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.200;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=-0.810;SOR=0.375;set=HC	GT:AD:AF:DP	1/1:1,256:1.00:257
chr1	54375701	rs11206244	C	T	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	54605319	rs36013100	G	GC	5243.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	54606804	rs3766465	C	T	7619.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr1	54607051	rs671103	A	G	14911.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr1	54607157	rs671539	G	A	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	54618435	rs7528345	A	T	14700.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr1	54637167	rs625643	T	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	54681920	rs13571	G	C	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	54692854	rs372535521	AG	A	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.281;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr1	54706733	rs2297027	A	G	8667.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	55014099	rs299874	C	T	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	55014160	rs299872	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	55064884	.	TATATATATATATAA	T	342.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.42;QD=31.16;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	55074922	rs2289016	G	A	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	55078046	rs1655528	T	C	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	55080612	rs147772009	GGTGT	G	3278.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	55080629	rs1702015	A	G	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	55118566	rs1655520	C	G	5391.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	55119144	rs11206407	A	G	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	55119289	rs9332417	G	C	10744.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	55119546	rs1655518	A	G	30610.77	.	AC=2;AF=1.00;AN=2;DB;DP=1195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,1181:1.00:1181
chr1	55129372	rs1529784	A	C	1193.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.41;ReadPosRankSum=2.017;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:9,42:0.82:51
chr1	55129374	rs138066572	AC	A	301.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=2.875;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:22,29:0.57:51
chr1	55129375	rs1655513	C	A	78.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.988;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr1	55129564	rs1529783	T	C	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	55130931	rs2078273	C	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	55130946	rs6703113	G	C	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	55130972	rs471724	C	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	55134379	rs627095	C	T	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	55136067	rs2251719	T	G	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	55136356	rs627226	C	T	13423.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:14,548:0.98:562
chr1	55167773	rs646356	T	A	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	55251689	rs586462	T	C	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	55253575	rs665118	T	C	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	55266845	rs1147984	C	T	8832.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	55271774	rs757581	A	G	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	55273580	rs9782980	G	T	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	55277430	rs10788986	T	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	55277599	rs600499	T	C	12768.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,502:1.00:502
chr1	55279345	rs149536795	CCCGGCCT	C	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	55282556	rs733168	A	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	55282721	rs150463971	G	C	8875.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	55319902	rs718265	A	G	2511.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.12;ReadPosRankSum=-1.345;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:2,98:0.98:100
chr1	55330966	rs611057	T	C	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	55446664	rs2253467	G	C	7104.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.74;SOR=2.240;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	55446671	rs2253466	C	T	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.13;SOR=1.777;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	55446697	rs2253465	G	A	10419.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr1	55457710	rs2500326	G	A	7317.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr1	55457815	rs2495513	C	T	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	55464743	rs2500340	T	C	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	55464790	rs2500341	C	G	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	55505732	rs2495482	A	G	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	55516781	rs599037	G	T	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	55518316	rs2483205	C	T	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	55518467	rs2495477	A	G	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	55521905	rs67578329	GA	G	3326.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.57;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	55521907	.	GGGCGGA	G	3325.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.56;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	55523033	rs509504	A	G	10256.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.849;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=-1.039;SOR=0.311;set=HC	GT:AD:AF:DP	1/1:1,401:1.00:402
chr1	55524339	.	C	CGT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.64;ReadPosRankSum=0.497;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	55529187	rs505151	G	A	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	55537966	rs17410238	G	A	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	55538003	.	G	C	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DP=316;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=3.448;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:258,55:0.18:313
chr1	55538462	rs17410294	C	T	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	55545466	.	T	TGAGTACTCTCACAGAGTACTCACACA	933.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=42.44;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	55545484	rs74650614	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.68;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	55549413	.	TA	T	346.74	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=34.67;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	57185818	rs857141	A	G	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	57192353	rs71772656	TAAA	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	57209695	rs1156845	T	C	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	57219631	rs11404547	G	GA	107.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	57221553	rs1774808	GA	TG	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.06;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	57224460	rs857103	G	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	57340860	rs2269118	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	57349407	rs6694643	A	T	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	57349464	rs6697228	T	C	78.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	57372591	rs619545	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.04;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	57395251	rs605648	T	C	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	57406392	rs6669836	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	57411779	rs41286852	G	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	57422484	rs1013579	C	T	10017.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:1,388:1.00:389
chr1	57528772	rs1261611	A	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	58939634	rs12407003	G	A	8719.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	59004979	rs902925	C	T	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	59126676	rs232779	A	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	59127086	rs7523134	G	A	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	59127193	rs7525365	C	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	59131311	rs232790	G	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	59134607	rs57822474	C	CAG	7577.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	59150941	rs2206764	G	A	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	59160735	rs2473746	A	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	59160885	rs2064374	A	G	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	59160982	rs5774423	ATACT	A	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	59248813	rs2760499	G	C	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	59364615	rs11207326	G	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	59364918	rs6658104	G	A	6367.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	60223460	rs590704	A	G	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	60228310	rs10626387	T	TTC	9569.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	60280749	rs113730234	GT	G	3149.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	60299820	rs618716	C	G	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	60324243	rs79984800	T	C	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	60466911	rs67112814	ACAG	A	1337.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	60475930	rs616949	C	G	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	60505578	rs680390	A	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	61548344	rs113913435	TTC	T	1834.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.857;QD=4.51;ReadPosRankSum=-0.472;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:304,103:0.25:407
chr1	61553801	rs3767302	C	G	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.193;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	61818422	rs7528918	A	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	61872215	.	GCC	G,GC	902.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=18.341;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.633;QD=11.28;ReadPosRankSum=-0.941;SOR=0.020;set=HC	GT:AD:AF:DP	1/2:19,30,31:0.38,0.39:80
chr1	61892301	rs5774558	T	TG	8543.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	61921185	rs11423561	A	AT	1216.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:20,75:0.79:95
chr1	62160542	rs1151765	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	62189541	rs17312971	T	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	62231924	rs141761262	T	TTGA	1082.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	62232031	rs1286835	C	T	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=25.13;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	62261168	rs7516332	A	G	8716.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	62329885	rs35853578	AT	A	190.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.07;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	62330080	rs2799627	T	G	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	62341157	rs4598521	T	C	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	62350123	rs368920295	GTTT	G	427.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=12.788;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.500;QD=21.39;ReadPosRankSum=1.901;SOR=2.780;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr1	62365217	rs1412622	C	T	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	62374267	rs2151122	T	C	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	62380195	rs2482858	A	G	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	62380270	rs1134766	C	T	9839.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr1	62380298	rs1056513	G	A	9384.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	62393394	rs2251182	A	G	9905.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr1	62417951	.	A	AG	651.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.49;MQRankSum=-0.114;QD=28.34;ReadPosRankSum=-1.437;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr1	62417952	.	A	G	364	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=4;HapScore=2;MGOF=94;MMLQ=27;MQ=59.38;NF=14;NR=4;PP=364;QD=22.1539562526;SC=GAGAGAGAGAAAAATAGGCCC;SbPval=0.53;Source=Platypus;TC=19;TCF=15;TCR=4;TR=18;WE=62417960;WS=62417942;set=Platypus	GT:AD:AF:DP	1/1:1,18:0.95:19
chr1	62417952	.	A	AGAGAGAGAG,AGAGAGAGAGAG	590.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.49;MQRankSum=-0.124;QD=29.54;ReadPosRankSum=-1.477;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:1,8,11:0.40,0.55:20
chr1	62503518	.	TTA	T	43.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	62579672	rs1475564	A	C	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	62579823	rs1475563	G	A	13155.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr1	62579907	rs7418709	C	T	8945.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr1	62587014	rs4019806	T	TAAA	4524.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;QD=33.52;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:3,132:0.98:135
chr1	62628500	rs58055963	TCC	T	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	62644118	rs2481703	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	62672546	rs2457829	G	A	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	62713224	rs2941679	C	G	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	62728784	rs2666472	A	G	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	62728838	rs2258470	T	C	7484.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,173:0.99:175
chr1	62728861	rs2260581	T	C	8565.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	62728918	rs2262110	G	A	10437.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr1	62729015	rs2262106	G	A	7573.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	62732421	rs11207949	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	62738904	rs7516290	T	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	62740446	rs2666506	T	C	10232.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	62740449	rs2666507	T	C	10168.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	62907883	rs34521477	C	G	175.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	62939634	rs1168007	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	62943264	rs1168008	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	62945418	rs1183260	A	G	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	62953183	rs1168025	C	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.79;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	62960250	rs1168041	T	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	62961928	rs1168038	T	C	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	62970184	rs1168027	T	C	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	62973795	rs1184865	A	G	388.85	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr1	62976472	rs1168043	T	G	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	63001120	rs1168018	A	C	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	63027411	rs5774610	AG	A	1318.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	63085483	rs34571440	T	TA	273.86	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	63113511	rs746735	C	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	63113689	rs1168088	T	C	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	63113719	rs1168089	T	C	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	63270823	rs74261206	CTT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=1.978;SOR=1.269;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr1	63306960	rs12743698	C	T	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	63307303	rs3737892	A	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.49;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	63339963	rs71045865	CAAAAAAAAA	C	384.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.47;QD=38.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	63920515	rs17319708	C	G	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	63975830	rs6588047	T	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.23;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	63975859	rs67405755	C	CA	342.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.16;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	63991140	rs9436686	T	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	63998326	rs72163225	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.530;QD=1.43;ReadPosRankSum=-0.807;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr1	63999138	rs147278933	A	G	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	64097432	rs1126728	C	T	10538.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr1	64100478	rs6588052	A	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	64102114	rs2269248	A	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	64515379	rs1772626	C	T	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	64608329	rs2762833	G	T	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	64624612	rs4362024	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	64624816	rs150047255	C	T	10151.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr1	64672478	rs35112334	A	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	64680682	rs825174	C	G	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=27.28;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	64698411	rs2029868	T	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	64707243	rs825189	G	C	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	64709891	rs10789152	A	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	64726414	rs705542	A	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	65016349	rs2164571	A	T	8074.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	65016399	rs11808959	G	A	6194.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	65045602	rs5774708	TA	T	598.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.464;QD=13.02;ReadPosRankSum=-2.243;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:6,40:0.87:46
chr1	65068638	rs6665437	T	C	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	65099701	.	GT	G	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=1.538;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr1	65099978	rs2118102	G	A	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	65107372	rs6664905	C	T	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	65113351	rs7534210	T	C	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	65113568	rs6588100	T	C	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	65234216	rs35506383	AT	A	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-1.623;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:77,22:0.22:99
chr1	65247394	rs2478151	T	C	183.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	65255018	rs2500232	G	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	65301669	rs2254002	C	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	65303510	rs4916004	G	A	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	65311262	rs2230587	G	A	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	65326098	rs200133188	CATGCATTT	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,9:0.90:10
chr1	65684425	rs11208611	C	T	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	65830297	rs2296478	G	T	561.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.13;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	65830298	rs111346712	T	TG	55.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.934;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.72;ReadPosRankSum=0.629;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	65830299	rs2296479	T	G	64.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.978;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=7.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.63;ReadPosRankSum=-0.569;SOR=3.407;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	65830608	rs1570868	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	65844963	rs3818449	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	65858088	rs6588144	T	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	65858145	rs4325172	G	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	65860687	rs4582839	A	C	10430.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr1	65867391	rs4592284	C	G	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	66036501	rs2186248	G	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	66618316	rs202241040	TACACACACAC	T	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	66731886	rs6588193	G	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	66732386	rs6588194	G	A	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	66732529	rs6701329	A	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	66831256	rs144339850	C	CA	1937.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	66831370	rs783036	G	A	7039.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	67109277	rs17490057	G	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	67154730	rs35898963	CA	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=1.256;SOR=1.293;set=HC	GT:AD:AF:DP	0/1:76,45:0.37:121
chr1	67160938	.	T	TA	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.717;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:140,41:0.23:181
chr1	67195184	rs1032635	C	G	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.01;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	67195192	rs1032634	C	G	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	67208622	rs17440885	A	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr1	67266756	rs549148	T	A	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	67288045	rs482082	C	T	7264.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	67303303	rs6698076	A	G	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	67359195	rs3008881	T	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	67390416	rs3008858	G	C	18190.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr1	67390468	rs1886686	C	G	13525.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr1	67396222	rs3008861	T	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	67401662	rs182913801	T	C	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	67425311	rs2985794	T	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	67425494	rs35465377	A	AT	56.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.04;ReadPosRankSum=-1.465;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr1	67474977	rs2755271	C	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	67487119	rs2065002	C	A	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	67487374	rs66809311	TCCAACA	T	2186.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.07;MQRankSum=1.083;QD=38.36;ReadPosRankSum=1.742;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr1	67487391	.	CACAG	C	444	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=27;MQ=59.83;NF=6;NR=29;PP=444;QD=12.9714285714;SC=CAGACACAGACACAGACACAG;SbPval=0.23;Source=Platypus;TC=52;TCF=6;TCR=46;TR=35;WE=67487415;WS=67487364;set=Platypus	GT:AD:AF:DP	0/1:17,35:0.67:52
chr1	67487393	.	CAGACACAG	C,CACACAG	904.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=65;set=Intersection	GT:AF:DP	1/2:0.50,0.50:14
chr1	67487399	rs72407410	CAG	C	227.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	67487405	.	CAG	C	1079	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=2;HapScore=1;MGOF=12;MMLQ=27;MQ=57.3;NF=5;NR=29;PP=1079;QD=32.0294117647;SC=GACACAGACACAGACACACAC;SbPval=0.13;Source=Platypus;TC=65;TCF=5;TCR=60;TR=34;WE=67487415;WS=67487364;set=Platypus	GT:AD:AF:DP	1/1:31,34:0.52:65
chr1	67487407	rs11208992	G	C	1018.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.40;QD=40.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	67508080	rs10546548	CCACT	C	4282.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	67512903	rs1024229	G	T	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	67512920	rs1024230	A	C	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	67516316	rs2815383	T	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	67558739	rs6588237	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	67560897	rs10889653	A	G	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	67560956	rs11208997	C	T	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	67562106	rs6670381	G	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	67577367	rs6588240	A	T	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	67579245	rs2144655	G	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	67579386	rs2144656	A	G	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	67591347	rs6691094	A	G	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	67591611	rs11336462	GA	G	420.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=0.935;QD=8.08;ReadPosRankSum=-0.021;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:11,41:0.79:52
chr1	67591660	rs4655520	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	67648460	rs6687620	T	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	67685387	rs7530511	T	C	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	67685443	rs7518660	G	A	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	67705726	rs10889671	A	G	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	67792626	.	TTTTA	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-1.282;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr1	67833501	rs2252596	G	A	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	67852141	rs12138812	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	68151980	rs2759219	T	G	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	68152386	rs3783469	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	68152386	.	TGT	CGC	257	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=2;HapScore=2;MGOF=15;MMLQ=24;MQ=60.0;NF=0;NR=5;PP=257;QD=62.0935749724;SC=TGGCTGCCTTTGTCCGACTAG;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=5;WE=68152396;WS=68152376;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	68152388	rs681673	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	68603432	rs1430754	C	T	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	68603586	rs983034	C	T	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	68603731	rs1831297	A	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	68614013	rs2566789	A	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	68620762	rs3762371	G	A	11637.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr1	68698131	rs11540823	C	T	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	68903942	rs12145904	C	T	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	68904513	rs12138573	A	G	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	68905358	rs1925955	G	C	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	68952564	rs138180992	AAC	A	74	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	70034370	rs11280966	C	CCAGCCGCGTG	15180.73	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.94;QD=42.17;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	70304758	rs12735430	A	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	70460304	rs72676879	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	70587360	rs641909	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	70742532	.	C	CA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.261;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr1	70904523	rs112004441	T	TTGTG,TTGTGTG,TTGTGTGTG	3902.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=186;set=Intersection	GT:AF:DP	1/2:0.18,0.82:90
chr1	71331498	rs1409986	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	71419499	rs571705	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	71477841	rs5673	A	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	71512643	rs5671	C	A	9866.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr1	71537980	rs41287936	C	T	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	71538191	rs11556475	A	G	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	71544069	rs74544306	G	A	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	72058367	rs1334004	C	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	72058405	rs1334005	T	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	72058552	rs1413368	G	A	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	72242039	rs6424448	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	72747844	rs3101341	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	74507711	rs7538410	T	G	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	74575182	rs1340472	C	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	74610233	.	TAA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=-0.674;QD=4.34;ReadPosRankSum=-0.545;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	74646514	rs6701961	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	74664149	rs4422957	T	C	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	74665493	rs792310	G	A	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	74666344	rs35329584	A	AC	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	74669973	rs9425024	T	G	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	74671519	rs571848	A	G	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	74701295	rs505508	T	A	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	74701950	rs532221	T	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	74716515	rs11437074	C	CT	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=2.244;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:41,28:0.41:69
chr1	74819077	rs6424586	T	G	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	74841173	rs2880795	A	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	74936374	rs596204	A	G	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	74936454	rs491922	G	C	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	74936984	rs77657462	T	C	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	74937749	rs3765674	A	G	7494.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	74941210	rs648614	C	T	9409.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.727;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=1.374;SOR=0.227;set=HC	GT:AD:AF:DP	1/1:1,370:1.00:371
chr1	74941266	rs45557838	A	T	10215.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,394:1.00:394
chr1	74941293	rs649058	G	A	11410.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,438:1.00:438
chr1	74946373	rs41289204	C	T	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	74957664	rs45594733	T	A	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.649;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	75036783	rs9326115	T	C	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	75036812	rs9326116	C	T	6242.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	75037857	rs10539747	CCCT	C	14629.73	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	75055419	rs2305549	T	C	13087.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr1	75100327	rs507431	A	C	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	75108863	rs623171	A	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	75112573	.	GACAC	G	37	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=18;MQ=60.0;NF=0;NR=2;PP=37;QD=20.0;SC=AAGACAGACAGACACACACAC;SbPval=1.0;Source=Platypus;TC=5;TCF=1;TCR=4;TR=2;WE=75112584;WS=75112563;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr1	75132462	rs5775255	T	TA	1756.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.587;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.340;QD=19.52;ReadPosRankSum=0.261;SOR=0.359;set=HC	GT:AD:AF:DP	1/1:7,83:0.92:90
chr1	75172756	rs10601033	TA	T	800.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.995;QD=10.97;ReadPosRankSum=-1.574;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:12,61:0.84:73
chr1	75190452	rs1051122	C	T	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	75199152	rs277373	C	T	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	75214375	rs142935215	CCAAA	C	2237.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=43.88;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	75596388	rs41289234	C	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	75603055	rs1526503	A	G	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	75614380	.	C	CT	475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.774;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:179,66:0.27:245
chr1	75679569	rs3831898	C	CT	535.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-0.761;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr1	75681511	rs595009	T	C	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	75685643	rs12042874	T	C	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	75699646	rs10493564	T	C	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	75699771	rs10493565	A	G	11650.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.497;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=1.598;SOR=0.248;set=HC	GT:AD:AF:DP	1/1:1,470:1.00:471
chr1	75699831	rs10493566	G	A	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	75704070	rs147152873	CATATATATATATAT	C	586.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	75707652	rs7556057	C	T	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	75708529	rs1856128	A	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	75766186	rs623850	G	A	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	75823084	rs1249833	C	T	268.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	76007232	rs211744	C	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	76143505	rs1746748	T	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr1	76194013	rs142795930	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	76194229	rs11316888	GT	G	1274.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	76194306	rs1146572	A	G	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	76234886	rs1146593	A	G	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	76252011	rs1146634	G	A	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	76252687	rs1146636	T	C	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	76253045	rs3831900	T	TA	2435.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	76255613	rs11588643	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	76257074	rs35837562	A	AT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.609;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr1	76257892	rs12703	A	T	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	76262523	rs721204	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	76269372	rs5745323	T	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	76269460	rs5745325	G	A	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	76287973	rs11404402	C	CA	167.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-0.000;QD=11.98;ReadPosRankSum=-0.812;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr1	76344011	rs1493367	C	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	76344711	rs5745449	A	T	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	76345640	rs2307077	G	T	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	76346920	rs5745466	C	CAT	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	76349534	rs5745485	C	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	76363505	rs2029680	A	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	76378275	rs5745547	G	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	76378357	rs71690142	ATAT	A	1294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=61.08;MQRankSum=0.985;QD=10.97;ReadPosRankSum=-0.660;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:25,93:0.79:118
chr1	76398053	rs146637045	T	A	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	76608491	rs289686	T	C	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	76608777	rs184095	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	76771475	rs10782610	G	T	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	77093010	rs680442	CT	TG	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	77093180	rs1184626	C	A	5273.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr1	77094242	rs41291522	G	A	49.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	77588131	rs7531782	T	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	77627096	rs839825	G	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	77634948	rs1779199	G	A	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	77763542	rs1167206	G	A	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	78001881	rs10873948	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	78024284	rs6675743	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	78024345	rs79671213	C	CTAT	4518.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=44.74;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	78031994	rs7552291	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	78033981	rs145860524	AAAATG	A	1742.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	78045369	rs1565852	G	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	78281002	rs11162386	T	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	78383467	rs1749913	G	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	78392446	rs1166698	G	A	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	78399207	rs4483454	C	G	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	78430689	rs11409017	A	AG	8492.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=36.45;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	78432506	.	TA	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.565;QD=0.42;ReadPosRankSum=-0.659;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:80,21:0.21:101
chr1	78471060	rs11384806	T	TC	121.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.02;MQRankSum=0.366;QD=17.32;ReadPosRankSum=0.566;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	78478675	rs3790586	G	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	78481640	rs1039863	G	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	78560583	rs565164	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	78578177	rs6666954	T	C	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	78585086	rs540742	T	C	4680.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	78591740	rs139844601	TAAC	T	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	78601465	rs3838409	C	CT	1895.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	79094593	rs273257	A	G	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	79102709	rs41292968	T	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	79356910	rs143948092	TA	T	853.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	79383300	rs5775467	CA	C	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	79383458	rs12569007	A	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	79383748	.	G	GA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=6.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.550;SOR=1.423;set=HC	GT:AD:AF:DP	0/1:96,29:0.23:125
chr1	79392756	rs12754818	C	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	79401927	rs61770681	A	G	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	79403751	rs985277	T	G	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	79411888	rs723898	T	C	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	79472141	rs1571992	C	A	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	81970989	.	C	T	859.77	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.88;QD=26.05;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	82402364	rs142993868	TAATC	T	1036.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	82415814	rs9438715	T	C	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	82421596	rs11163397	C	T	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	84355734	rs71826512	AAGAACTTCAAGGAT	A	4777.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	84383079	rs17534614	G	A	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	84640691	rs582201	T	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	84765358	.	ATT	A	172.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=1.774;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr1	84765360	rs1625305	T	A	1198.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.907;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=3.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=1.822;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:38,55:0.59:93
chr1	84791239	rs315555	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	84810396	rs315528	A	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	84810815	rs315527	A	G	10799.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr1	84853957	rs665074	A	T	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	84864256	rs3738573	G	C	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	84867610	rs3754274	G	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	84874242	rs3116406	C	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	84876711	rs3216015	C	CA	2475.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	84876731	rs1506700	T	G	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	84880380	rs3768250	T	C	9532.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr1	84944940	rs11163977	G	A	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	84946469	rs11163978	G	T	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	84946745	rs7413066	C	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	84955233	rs11163983	C	T	7085.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	84956161	rs11440073	C	CT,CTT	3027.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=3.555;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.879;QD=14.49;ReadPosRankSum=-0.474;SOR=1.107;set=HC	GT:AD:AF:DP	1/2:33,141,35:0.67,0.17:209
chr1	84962971	rs12077012	G	A	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	84971833	rs11163985	G	C	7662.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	84971969	rs13093	G	T	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	84982236	rs10874450	G	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	84986213	rs5775789	AT	A	185.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	84998445	rs6690204	C	G	127.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	84999571	rs10874451	T	C	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	85009894	rs12143652	A	G	9194.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	85016177	rs1400777	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	85029077	rs15911	C	T	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	85031630	rs2994953	G	A	4738.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.914;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=1.527;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:1,186:0.99:187
chr1	85036239	rs2303306	C	G	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	85039828	rs41299545	G	A	10461.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr1	85039955	rs2303307	G	A	9618.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr1	85039998	rs142534762	CGCAGCGCCA	C	3112.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	85040069	rs2911592	G	A	2570.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	85040069	.	GC	AA	918	.	AC=1;AF=0.500;AN=2;FR=0.5728;HP=1;HapScore=1;MGOF=340;MMLQ=23;MQ=60.0;NF=6;NR=26;PP=918;QD=30.3583710894;SC=TAGAGACGAGGCGCCAGCGTC;SbPval=0.56;Source=Platypus;TC=32;TCF=6;TCR=26;TR=32;WE=85040078;WS=85040059;set=Platypus	GT:AD:AF:DP	1/0:0,32:1.00:32
chr1	85040070	rs115347546	C	A	2570.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	85096592	rs11164027	C	T	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	85096920	rs6695249	A	G	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.90;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	85097247	rs12031476	T	G	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	85113203	rs2994949	T	C	10609.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr1	85128280	rs2994437	T	C	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	85131982	rs3096445	T	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	85331808	rs146269415	G	GAGA	4208.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	85412989	rs150462929	CCA	C	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.738;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	85488030	rs2028304	G	A	5906.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	85488154	rs2039814	G	C	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	85537502	rs4907131	T	A	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	85537522	rs4907132	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	85547945	rs7534574	T	C	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	85555672	rs1417351	A	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	85589939	rs11356964	GT	G	9901.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	85592126	rs817474	G	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	85595645	rs1020770	C	T	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	85598527	rs36118758	TC	T	3271.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	85624549	rs709786	C	T	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	85624661	rs74980814	A	G	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	85624864	rs817412	G	A	7016.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	85634653	rs77636110	T	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.44;SOR=2.687;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	85634892	rs61752463	A	G	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	85647713	rs817444	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	85647868	rs17122989	T	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	85648620	rs817443	C	T	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	85655931	rs61756695	C	T	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	85666156	rs12121540	T	G	12114.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr1	85741921	rs2735594	G	C	8223.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	85787114	rs233116	A	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	85930272	rs4001153	GAC	G	1390.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;QD=30.23;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	86047311	rs9658584	G	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	86146672	rs3767162	G	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	86167957	rs1764298	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	86202016	rs1481200	C	T	10176.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	86202102	rs12037785	C	A	8948.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:1,352:1.00:353
chr1	86210241	rs11387251	G	GT	271.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	86210546	rs7547023	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.835;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	86211325	rs10747324	G	A	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	86246849	rs313722	A	C	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	86249063	rs313724	C	T	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	86249307	rs139322616	T	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	86249911	rs313725	A	G	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	86334070	rs313775	T	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	86334316	rs17411495	T	C	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	86340193	rs11161696	G	T	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	86340523	rs1564518	T	C	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	86340794	rs1564516	T	C	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	86340892	rs7536101	A	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	86355414	.	CT	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.463;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=5.919;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.955;SOR=1.549;set=HC	GT:AD:AF:DP	0/1:68,26:0.28:94
chr1	86361802	rs7541806	C	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	86375654	rs1502657	C	G	8423.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	86375840	rs41306625	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	86435850	rs7538391	T	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	86487914	rs11161721	C	A	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	86487981	rs516213	G	A	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	86487992	rs5775882	A	AACAG	3926.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	86497417	rs145877277	TG	T	300.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	86497769	rs582141	C	G	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	86529390	rs12742014	G	A	6777.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	86557967	rs11161732	G	A	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	86590915	rs2174767	G	A	6382.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	86591837	rs11161747	G	A	8443.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	86621992	rs1999747	C	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr1	86838177	rs200048333	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	86891005	rs1158506	C	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	86891073	rs11580625	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	86896354	rs4292929	G	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	86896706	rs3737673	C	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	86897970	rs12407985	T	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	86897973	rs1334150	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.04;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	86900332	rs17449526	T	C	7559.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	86900372	rs17409304	C	G	7155.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	86900491	rs56408800	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	86904588	rs11161830	C	T	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.242;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	86904850	rs10493791	C	T	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	86905759	rs11161835	G	C	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	86906114	rs1981082	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	86909493	rs2390059	C	T	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	86909582	rs1413426	G	A	6624.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	86913074	rs12752909	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	86920904	rs2390057	A	G	9804.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.01;ReadPosRankSum=1.742;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,376:1.00:377
chr1	86939130	rs2145412	C	T	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	86939390	rs2180762	G	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	86947975	rs1321694	A	T	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr1	86948169	rs2791514	T	C	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.322;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	86956785	rs2753342	C	G	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	86956846	.	C	T	952.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	86959173	rs2791494	T	C	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	86959796	rs1321689	C	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	86965419	rs1882753	T	C	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	87046169	rs17416766	G	A	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	87099909	rs12745600	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	87101245	rs2292831	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	87101375	rs2292830	C	G	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	87170493	rs263438	T	G	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	87185449	rs263465	T	G	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	87189896	rs12755853	G	T	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	87200729	rs263483	C	G	9717.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	87207800	rs166415	G	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	87207872	rs263478	G	T	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	87208953	rs7805	T	A	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	87368917	rs573680	A	G	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	87369176	rs571015	C	T	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	87458742	rs61771748	A	G	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	87549858	rs2798675	A	G	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	87558066	rs66709085	CCACATA	C	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	87563668	rs1199677	G	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	87633761	rs10782593	C	T	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	89225976	rs430600	T	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	89236029	rs7541301	T	A	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	89250481	rs201679232	ATCT	A	3948.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	89271574	rs786906	T	C	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	89280965	rs786918	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	89322982	rs2794318	G	A	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	89449383	rs147771633	G	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-4.635;QD=8.21;ReadPosRankSum=0.759;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	89449390	rs112636230	T	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-4.569;QD=7.84;ReadPosRankSum=1.292;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr1	89449399	rs77567101	T	C	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-5.124;QD=5.51;ReadPosRankSum=1.884;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr1	89449508	.	A	AT	227	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=11;HapScore=2;MGOF=16;MMLQ=24;MQ=55.58;NF=2;NR=11;PP=227;QD=18.1538461538;SC=TGCTTCAACCATTTTTTTTTT;SbPval=0.64;Source=Platypus;TC=55;TCF=9;TCR=46;TR=13;WE=89449516;WS=89449498;set=Platypus	GT:AD:AF:DP	0/1:42,13:0.24:55
chr1	89474818	rs17433780	A	G	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	89475135	rs10493821	C	T	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	89475230	rs4142706	T	G	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	89478854	rs4656076	C	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	89479758	rs3795543	T	C	11666.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,458:1.00:458
chr1	89486037	rs7555039	C	T	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	89520574	rs10922554	C	A	3517.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=4.249;MLEAC=2;MLEAF=1.000;MQ=59.26;MQRankSum=-0.101;QD=26.45;ReadPosRankSum=-0.712;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:1,132:0.99:133
chr1	89520636	rs10922555	G	A	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.07;QD=41.08;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	89520643	rs10922556	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.25;QD=42.83;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	89520658	rs55880826	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.24;QD=28.14;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	89521841	rs1048443	G	C	5254.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	89522646	rs1048425	G	C	5250.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	89523927	rs60070945	C	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	89525812	rs6701673	C	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	89525820	rs61798936	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.17;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	89618472	.	G	GA	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.193;QD=4.39;ReadPosRankSum=1.257;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr1	89845926	rs11361992	GT	G	3214.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:5,160:0.97:165
chr1	89847372	rs4658359	G	T	10285.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr1	89847411	rs4658360	C	T	9014.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	89847444	rs4658146	A	G	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	89849201	rs928652	C	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	89849350	rs928653	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	89849441	rs928654	T	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	89849574	rs928655	G	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	89849742	rs959460	A	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	89851100	rs369061637	G	GT	391.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-2.164;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr1	89885854	rs6673154	G	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	89888530	rs4261099	C	T	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	89888552	rs4282800	T	A	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	89888585	rs4415545	C	G	12136.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=44.79;SOR=1.041;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	89888588	rs4506445	G	T	12138.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.76;QD=43.66;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	90058242	rs34096201	G	GT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.810;QD=1.55;ReadPosRankSum=1.560;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr1	90171835	rs6657969	C	T	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	90178743	rs474536	A	G	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	90470915	rs11808927	T	A	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	90486412	rs2816881	T	G	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	90493026	rs10922744	G	A	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	91383589	rs2448020	T	G	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	91402917	rs143274609	T	TA	173.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr1	91447985	rs358691	C	T	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	91728053	rs585898	G	A	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	91728202	rs555432	T	C	140.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	91739208	rs281964	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	91739414	rs281963	G	A	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	91740542	.	A	AT	26	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=0.9997;HP=17;HapScore=2;MGOF=4;MMLQ=28;MQ=57.15;NF=0;NR=2;PP=26;QD=14.5;SC=AAATGTTGGCATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=91740550;WS=91740532;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	91781304	rs281991	T	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	91781413	rs281992	T	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	91793877	rs281972	T	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	91813184	rs281936	C	T	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	91841301	rs282036	T	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	91846374	rs282033	C	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	91846595	rs5776097	T	TA	328.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	91846654	rs282032	A	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	91851253	rs282026	T	C	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	91859795	rs282009	T	C	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	91973557	rs553606	T	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	91974034	rs1876264	G	A	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	91980447	rs483532	A	G	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	91980649	rs10874758	G	A	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	91989572	rs488126	T	G	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	92163786	rs2296621	G	T	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	92174260	rs284878	A	G	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	92177938	rs1805113	A	G	8331.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	92184814	rs7524066	G	T	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	92185657	rs1805112	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	92195601	rs10783002	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	92200593	rs11165376	A	G	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	92200627	rs10874913	T	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	92428495	rs10783071	C	A	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	92430435	.	CGT	C	676.90	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr1	92446112	rs11165911	T	C	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	92446398	rs2303967	T	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	92447004	rs10875104	A	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	92457843	rs10747493	C	T	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	92546425	rs12739985	C	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	92647532	rs565156	C	A	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	92712266	rs974924	C	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	92764828	rs10875348	T	A	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	92799151	rs1487537	C	T	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	92852504	rs10747411	A	G	1437.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;MQRankSum=-0.268;QD=23.19;ReadPosRankSum=2.074;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:2,60:0.97:62
chr1	92944314	.	C	CAGAGAGAGAGAG	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.06;ReadPosRankSum=1.741;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr1	92946479	rs11164605	G	A	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr1	92979094	.	ATATATATATATATATATATATATATATATG	A	306.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.67;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	92979354	rs6603979	A	G	9708.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	93029453	rs6656432	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	93071048	rs2050597	G	T	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	93089823	rs7514716	T	C	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	93128854	rs10747450	A	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	93159821	.	CA	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=3.020;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr1	93160902	rs2391199	T	C	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	93163385	rs7418336	A	G	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	93163633	rs1017008	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	93167610	rs10218567	C	T	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	93167854	rs10218670	A	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	93312142	rs12746956	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	93312192	rs200610101	C	CT	194.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.70;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	93312592	rs12062315	C	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	93426866	rs945629	T	C	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.53;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	93426869	rs1415069	G	C	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.08;SOR=1.295;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	93426874	rs116489989	G	T	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=1.222;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	93545157	rs2815419	G	A	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	93580402	rs11164874	T	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	93580581	rs2815427	G	C	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	93584870	.	C	CT	394.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.850;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr1	93602194	rs2281524	C	T	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	93683210	rs624131	A	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	93687091	rs797661	G	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	93692081	rs71661730	AAT	A	178.06	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	93698222	rs661566	C	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	93704793	rs5776176	CT	C	50	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.50;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	93712532	rs670650	G	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	93744055	rs10874767	G	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	94041787	rs25569	G	GAC	2011.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	94312482	rs5776191	T	TC	28222.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=1133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.088;QD=25.43;ReadPosRankSum=-1.075;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:2,1108:1.00:1110
chr1	94312528	rs147446599	G	GC	27563.73	.	AC=2;AF=1.00;AN=2;DB;DP=883;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=42.93;SOR=1.780;set=HC	GT:AD:AF:DP	1/1:0,642:1.00:642
chr1	94312533	rs202198870	G	GC	26261.73	.	AC=2;AF=1.00;AN=2;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=45.36;SOR=2.070;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr1	94312542	.	G	GC	23677.73	.	AC=2;AF=1.00;AN=2;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=46.61;SOR=2.219;set=HC	GT:AD:AF:DP	1/1:0,508:1.00:508
chr1	94312544	.	G	GC	22912.73	.	AC=2;AF=1.00;AN=2;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=47.83;SOR=2.229;set=HC	GT:AD:AF:DP	1/1:0,479:1.00:479
chr1	94312554	.	A	AG	18772.73	.	AC=2;AF=1.00;AN=2;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=48.01;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr1	94312559	.	CGGCTGGGTCGGGCG	C	16567.73	.	AC=2;AF=1.00;AN=2;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=47.07;SOR=2.289;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	94312576	.	G	GC	15847.73	.	AC=2;AF=1.00;AN=2;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=47.59;SOR=2.295;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	94312579	.	G	GT	14511.73	.	AC=2;AF=1.00;AN=2;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=47.12;SOR=2.196;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	94312584	rs200230769	G	GC	13365.73	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=45.31;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	94335194	rs1051394	A	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	94335643	.	G	GA	43	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=7;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=43;QD=34.0;SC=AATCTAGGGAGAAAAAATGGC;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=94335651;WS=94335633;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	94336498	rs57384286	C	CA	100.06	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	94341137	rs2273166	C	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	94341267	rs2273165	A	G	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	94342564	rs3747965	C	A	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	94343023	rs2391322	A	G	6371.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	94343233	rs3789457	T	C	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	94344716	rs2235971	C	T	39139.77	.	AC=2;AF=1.00;AN=2;DB;DP=1541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,1528:1.00:1528
chr1	94471075	rs1762114	A	G	10823.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,417:1.00:417
chr1	94474328	rs4147857	T	C	8671.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	94474452	rs4147856	T	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	94476555	rs537831	G	A	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	94487354	rs472908	G	A	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	94495930	rs547806	T	C	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	94511533	rs3789398	G	A	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	94544135	rs4147887	A	AC	2333.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	94544234	rs3112831	T	C	6047.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	94544805	rs139796930	T	TCA	685.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:5,25:0.83:30
chr1	94549029	rs526016	A	G	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	94549083	rs574741	T	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	94574053	rs11165073	C	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	94574342	rs61753051	AT	A	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.51;ReadPosRankSum=-2.142;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	94576968	rs2297634	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	94578548	rs4847281	T	C	6053.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	94639337	rs1330858	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	94639447	rs1999272	C	T	11224.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr1	94667430	rs5776210	G	GA	103.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	94668046	rs1541099	C	T	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	94674723	rs6684237	G	A	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	94674726	rs2274788	T	C	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	94924046	rs2147794	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	94930345	rs16946	G	A	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,125:0.98:127
chr1	94941376	rs681187	G	A	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	94980671	rs3118109	C	G	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	94997844	.	A	AC	1288.73	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	95001600	rs698946	A	C	3977.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.980;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=2.060;SOR=0.243;set=HC	GT:AD:AF:DP	1/1:1,157:0.99:158
chr1	95211285	rs6541364	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	95211525	rs1333953	G	A	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	95285892	.	T	TCCAGCCCCAGCC	3167.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.39;MQRankSum=0.652;QD=27.79;ReadPosRankSum=0.572;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:2,112:0.98:114
chr1	95286094	rs10782992	G	T	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	95286658	rs6676991	C	A	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	95286675	rs11274910	GTCCCAAATGTAAA	G	3319.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	95290003	rs6687749	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	95290305	rs6541372	T	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	95291366	rs10874894	A	G	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	95330372	rs859098	G	A	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	95333068	rs859096	G	T	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	95358096	rs859063	A	G	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	95367108	rs10605235	ACC	A	272.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	95367136	rs859059	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	95367649	rs859058	T	C	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	95367894	rs859057	A	C	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	95369211	rs859054	T	G	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	95428455	rs60283438	C	CT	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.637;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:39,36:0.48:75
chr1	95705615	rs640527	G	A	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	95709821	rs259358	T	C	7077.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	95709939	rs2296308	T	G	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	95710329	rs1062076	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	97547831	rs290854	G	A	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	98349390	rs111231337	C	CA	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.814;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.239;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	98511738	.	T	G	4205.77	.	AC=2;AF=1.00;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	99127205	rs12723363	A	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	99127392	rs9728148	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	99150635	rs9433747	G	A	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	99164434	rs6577322	G	A	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	99225627	rs2019213	G	A	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	99418911	.	T	TTG	331.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.46;ReadPosRankSum=1.997;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr1	100133438	rs143626158	CT	C	117.74	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	100152443	rs1338576	T	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	100184963	.	CA	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=2.030;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr1	100316589	rs2307130	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	100316765	rs663848	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	100318092	rs11459891	A	AT	103.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.92;ReadPosRankSum=0.393;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	100329889	rs535461	G	C	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	100335883	rs903126	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	100336361	rs2230306	C	T	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	100340225	rs634880	G	A	3716.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.210;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.760;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=1.131;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:1,144:0.99:145
chr1	100342227	rs3736295	C	T	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.218;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	100343153	rs2291638	A	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	100345409	rs2392077	C	G	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	100346741	rs3736296	T	C	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	100350383	rs2234707	G	A	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	100353675	rs555929	G	A	9422.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	100357141	rs2035961	T	A	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	100358200	rs594249	G	A	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	100366446	rs35956186	GTT	G	1369.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.547;QD=19.29;ReadPosRankSum=0.893;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:16,55:0.77:71
chr1	100376448	rs2274570	G	A	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	100376456	rs1541041	T	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.74;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	100381109	rs112476688	A	AT	87.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.381;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=-1.097;QD=7.99;ReadPosRankSum=-0.498;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:3,8:0.73:11
chr1	100381869	rs2296885	G	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	100533960	rs6687189	G	A	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	100575933	rs13375867	G	A	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	100598866	rs472498	GC	AT	9316.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	100617887	rs2784177	C	T	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	100624000	.	C	CT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.92;ReadPosRankSum=-0.575;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	100626182	rs35699743	C	CT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.267;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr1	100671866	rs34229137	T	A	1305.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.450;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.875;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=0.059;SOR=0.383;set=HC	GT:AD:AF:DP	1/1:5,63:0.93:68
chr1	100672060	rs12021720	T	C	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	100680593	rs11431894	C	CT	137.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=6.929;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.396;QD=6.89;ReadPosRankSum=1.053;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	100715454	rs3806235	G	A	10707.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr1	100733207	rs60634058	G	GT,GTT	4162.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.71;ReadPosRankSum=-1.192;SOR=0.726;set=HC	GT:AD:AF:DP	1/2:31,148,86:0.56,0.32:265
chr1	100733552	rs4298755	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	100750733	rs58046505	AGTTTT	A	4662.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	100756884	rs147800556	CT	C	1291.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	100817529	.	A	AGT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=0.499;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	100818464	rs594529	T	C	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	100961779	rs149672640	ATT	A	317.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	100970346	rs10875295	T	C	11444.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr1	101194965	rs68164684	G	GT	445.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.79;MQRankSum=0.462;QD=14.86;ReadPosRankSum=1.674;SOR=0.512;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr1	101203827	rs3176879	G	A	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	101372607	rs4908106	C	A	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	101476712	rs11166536	G	C	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	102271774	rs4907955	G	A	8624.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	102296144	rs10493974	T	G	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	102296279	rs10493973	T	C	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	102462446	rs67744758	GTCAGT	G	4124.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=44.35;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	103352451	rs2229783	A	G	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	103354138	rs1676486	A	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	103354428	rs1763347	A	G	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	103354939	.	C	CTGTGTGTGTGTG,CTGTGTGTGTG	586.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=15;set=Intersection	GT:AF:DP	1/1:1.00:13
chr1	103356168	rs1085	A	C	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	103379918	rs3753841	G	A	2156.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.836;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.274;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.79;ReadPosRankSum=-0.639;SOR=1.147;set=HC	GT:AD:AF:DP	1/1:1,98:0.99:99
chr1	103380379	rs34228277	T	TA	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=1.222;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr1	103400491	rs11164641	GA	AT	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	103405793	rs2126642	G	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	103427381	rs1012282	A	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	103428389	rs1841834	G	A	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	103435626	rs2061710	G	A	126.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	103444497	rs1903787	A	G	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr1	103445223	rs2622846	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	103449598	rs2615978	G	C	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	103455217	rs1463034	C	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	103461508	rs2622867	T	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	103462473	rs2786125	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	103463976	rs2622870	G	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	103467596	rs12135531	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	103467615	rs2929162	C	T	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	103468609	rs2251895	A	G	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	103468767	rs12136577	A	T	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	103471456	rs71752747	CCAT	C	4265.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:4,178:0.98:182
chr1	103487394	rs35291481	CT	C	958.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.427;QD=13.69;ReadPosRankSum=0.722;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:9,61:0.87:70
chr1	103496620	rs7523441	G	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	103496805	rs36076089	GA	G	585.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.381;QD=13.62;ReadPosRankSum=0.113;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:4,39:0.91:43
chr1	103540489	rs34822172	A	G	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	103544191	rs6668897	C	T	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	103544434	rs12136865	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	103573547	rs6691654	G	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	104086145	rs10785725	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	104203017	.	AC	A	844.73	.	AC=1;AF=0.500;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	0/1:103,32:0.24:135
chr1	107946324	rs71897263	CA	C	1766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.726;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.750;QD=8.41;ReadPosRankSum=1.850;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:54,156:0.74:210
chr1	107979396	rs480392	A	C	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	108185301	rs12403266	C	G	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	108185309	rs12410676	G	A	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	108292260	rs6672483	A	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	108299775	rs34437461	ATG	A	929.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.490;QD=25.83;ReadPosRankSum=1.378;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:2,34:0.94:36
chr1	108307642	rs7514025	C	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	108307727	rs7528153	T	A	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	108315305	rs4611048	C	T	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	108507541	rs71796067	GGCC	G	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	108679532	rs17513812	C	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	108681600	rs34563977	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	108700316	rs829002	G	C	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	108724518	rs490680	A	G	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	108724693	rs491785	G	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	108728347	rs694667	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	108728484	rs862493	T	C	1921.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.545;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.23;ReadPosRankSum=-0.672;SOR=0.643;set=HC	GT:AD:AF:DP	1/1:1,94:0.99:95
chr1	108734993	rs521545	G	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	109170746	rs2133198	C	T	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	109255513	rs3006864	G	T	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	109260357	rs4970804	G	A	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	109265029	rs4423040	G	T	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	109289353	rs1124427	C	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	109289487	rs6604120	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	109299453	rs1277044	C	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	109301250	rs1277042	G	C	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	109315211	rs1623641	A	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	109321824	rs1759481	G	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	109325028	rs1277051	T	C	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	109358958	rs6696787	T	C	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	109366286	rs7522157	C	T	7532.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr1	109366370	rs7522260	C	T	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	109369797	rs11102506	T	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	109369915	rs7551421	G	T	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.63;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	109372968	rs1277221	T	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	109377157	rs5776950	TA	T	1534.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:8,100:0.93:108
chr1	109391486	rs1149142	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	109395105	rs1277207	C	T	10799.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr1	109486196	rs338466	A	G	11915.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr1	109486240	rs3215062	TA	T	10390.73	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:3,420:0.99:423
chr1	109490457	rs839543	T	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	109493134	rs34131552	G	GTTA	970.70	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:2,25:0.93:27
chr1	109524584	rs487901	C	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	109529322	rs61696019	T	TAA	1409.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	109545046	rs184606	C	T	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	109618308	rs34069017	G	A	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	109650484	.	GA	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.893;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr1	109704390	rs643197	C	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	109704618	rs678238	A	G	8597.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	109714750	rs2297758	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	109714919	rs2297757	A	G	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	109727475	rs649531	T	C	65.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	109727653	rs112642730	CT	C	3351.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	109727832	rs12239854	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	109732387	rs17034092	G	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	109740310	rs113482805	A	AGAGAGAGTGT,AGAGAGAGTGTGT	1064.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;set=Intersection	GT:AF:DP	1/2:0.44,0.56:25
chr1	109740548	rs2296696	G	T	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	109742452	rs913178	C	T	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	109742485	rs913179	G	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	109745618	rs1052878	T	C	5840.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	109771881	rs657511	G	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	109779556	rs631927	T	A	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	109794252	rs454107	T	C	20959.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0.000;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=-2.049;SOR=0.241;set=HC	GT:AD:AF:DP	1/1:4,830:1.00:834
chr1	109795026	rs413380	T	C	9983.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr1	109795608	rs437444	T	C	9363.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr1	109796053	rs2359414	C	T	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	109810544	rs2281894	C	A	8024.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	109816176	rs441853	A	C	10576.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	109825360	rs643457	C	T	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	109836842	rs646335	C	G	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	109838833	rs616899	T	C	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	109838918	rs629001	C	T	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	109839392	rs604349	A	G	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	109839433	rs1278285	A	G	8968.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	109839954	rs603624	G	C	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	109856842	rs372331171	TG	T	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.152;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr1	109883576	rs3217347	C	CAT	2806.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	109884775	rs2228604	T	G	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	109897103	rs11142	A	G	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	109898263	rs143094090	A	ACC	850.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=40.51;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	109898267	rs71306129	G	GC	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.085;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	109958035	rs1465607	T	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	110009434	rs2787015	A	C	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	110009654	rs138525393	AC	A	12671.73	.	AC=2;AF=1.00;AN=2;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=31.52;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	110018148	rs530565	C	T	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	110031188	rs12049330	T	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	110086451	rs17575798	G	A	11940.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr1	110091271	rs3737182	C	T	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	110141421	rs1889470	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	110153198	rs6658641	G	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	110155524	rs2304355	T	C	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	110171120	rs41280332	A	G	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	110199172	.	CTGTGTG	C	384.73	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;QD=38.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	110199225	.	TG	T	468	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=14;HapScore=2;MGOF=172;MMLQ=22;MQ=58.86;NF=5;NR=7;PP=468;QD=40.0;SC=TGCGCCGGGGTGGGGGGGGGG;SbPval=0.34;Source=Platypus;TC=17;TCF=9;TCR=8;TR=12;WE=110199233;WS=110199215;set=Platypus	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	110200360	rs560018	T	C	14147.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr1	110201580	rs650985	C	T	11506.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr1	110201699	rs506008	T	C	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	110201809	rs562996	G	T	12746.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;MQRankSum=6.571;QD=44.41;ReadPosRankSum=2.216;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:2,285:0.99:287
chr1	110201812	rs563003	A	G	12761.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;MQRankSum=8.912;QD=43.85;ReadPosRankSum=2.407;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:2,289:0.99:291
chr1	110210780	rs530021	C	G	11223.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr1	110230767	rs10857795	G	A	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	110231592	rs737497	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	110233138	rs74837985	G	C	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.76;QD=28.31;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	110252010	rs1292098	T	C	17275.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=-0.095;QD=25.52;ReadPosRankSum=2.430;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:2,675:1.00:677
chr1	110279821	rs1537234	C	A	12254.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr1	110281941	rs10735234	G	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	110282972	rs1332018	G	T	11847.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.097;set=HC	GT:AD:AF:DP	1/1:0,454:1.00:454
chr1	110294577	rs2274536	A	G	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	110295643	rs1887546	G	T	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	110295772	rs1887547	T	C	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	110295890	rs1887548	C	G	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	110299550	rs2094469	A	G	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr1	110300441	rs3818562	G	A	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	110300504	rs10776700	A	G	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	110301215	.	T	C	8321.77	.	AC=2;AF=1.00;AN=2;DP=331;set=Intersection	GT:AD:AF:DP	1/1:1,324:1.00:325
chr1	110301260	rs6693815	C	T	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	110301766	.	A	AGT	656.73	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr1	110304537	rs6676659	G	A	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	110466338	rs333970	C	A	28582.77	.	AC=2;AF=1.00;AN=2;DB;DP=1108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,1089:1.00:1089
chr1	110466709	rs333971	T	C	13521.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,534:1.00:534
chr1	110467745	rs333972	A	G	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	110558276	rs11384766	A	AC	2711.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	110580693	.	AATATATATAT	A	54.70	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	110592048	.	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=1.141;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	110735037	rs2603583	T	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	110738296	rs2784140	G	A	10234.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr1	110740273	rs2603581	G	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	110740688	rs2761445	C	T	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	110765535	rs611587	C	G	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	111059825	rs3768457	G	A	2830.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.582;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	111060669	rs1281175	T	C	6420.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr1	111061011	rs3748731	C	A	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	111061062	rs1281174	T	C	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	111144526	rs4839071	T	G	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	111390624	rs112561357	AT	A	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.523;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.672;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr1	111436857	rs1578956	TC	GT	9874.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	111437129	rs1343817	A	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	111437176	rs5777031	G	GA	184.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	111441829	rs1803259	C	T	8823.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	111492807	rs2232044	G	A	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	111740695	rs41313999	G	A	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	111770423	rs755467	T	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	111773568	rs2255089	G	C	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	111773830	rs2147789	A	T	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	111778241	rs2764544	C	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	111783996	rs2494007	A	G	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	111784148	rs2764551	T	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr1	111784783	rs41313997	G	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	111826023	rs6688201	C	G	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.84;QD=25.96;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	111853060	rs143789088	A	AGCCAATCTAG	5294.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.158;QD=28.93;ReadPosRankSum=1.135;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:2,181:0.99:183
chr1	111854207	rs4839122	T	C	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	111854755	rs4423003	A	C	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	111854889	rs41282492	A	G	19216.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=45.32;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,424:1.00:424
chr1	111854895	rs41282494	G	A	19591.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=43.54;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,450:1.00:450
chr1	111854938	rs41282496	G	T	12871.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;MQ=59.71;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr1	111855149	rs74108971	C	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	111857087	rs2786151	C	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	111857154	rs2786152	T	C	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	111858444	rs2786156	C	T	7917.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.76;QD=25.46;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	111858499	rs6661725	A	G	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.62;QD=25.26;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	111858525	rs371155945	TAAATATAAGAATAAGA	T	5081.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.22;QD=44.97;SOR=1.761;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	111858542	rs376128132	CACTATCCTTGGCTT	C	5063.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.06;QD=44.42;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	111861714	rs2786161	T	A	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	111861822	rs17027410	G	A	7224.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	111861841	rs2275253	A	G	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	111861974	rs2275254	T	C	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	111862078	rs12094378	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	111862952	rs2256721	T	G	8160.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	111889457	rs11590153	A	T	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	111890243	rs377429219	TC	T	60.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=9.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.876;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	111890244	rs3738305	C	T	166.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=9.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-0.125;SOR=2.902;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	111891192	rs2184884	C	A	9467.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr1	111892905	rs3820443	T	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.30;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	111892909	rs56255516	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.12;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	111893708	rs10158004	G	A	79.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	111893958	rs1668	A	G	4832.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	111970431	.	TACAC	T	95	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=18;MQ=58.01;NF=0;NR=4;PP=95;QD=24.5;SC=CAGCTACACATACACACACAC;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=4;WE=111970442;WS=111970421;set=Platypus	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	112020222	rs3831358	GC	G	6459.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	112020224	rs115634476	C	A	6583.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	112020238	rs2211494	A	C	7676.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	112026198	rs9025	T	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	112028577	rs2275796	A	T	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	112029193	rs2252739	A	G	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	112029325	rs2800906	A	G	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	112032347	rs2789539	G	A	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	112033456	rs3831359	G	GA	2452.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	112033515	rs2252198	T	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	112033519	rs2252197	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	112042632	rs2229155	A	G	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	112106444	rs1591712	G	A	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr1	112305406	.	TA	T	494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.435;QD=2.73;ReadPosRankSum=0.064;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:108,73:0.40:181
chr1	112539061	rs2366125	A	G	6854.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	112991862	rs3818729	G	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	112999227	rs1175641	G	A	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	113084801	.	A	C	291.77	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	113113167	.	G	GTA	26	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.4998;HP=2;HapScore=3;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=1;PP=26;QD=30.0;SC=AATAAAAGATGTATATATATA;SbPval=0.42;Source=Platypus;TC=12;TCF=7;TCR=5;TR=1;WE=113113176;WS=113113157;set=Platypus	GT:AD:AF:DP	0/1:11,1:0.08:12
chr1	113196197	rs2932528	A	T	99.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-2.358;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr1	113196198	rs200137493	A	T	816.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=37.12;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	113202417	rs2932536	G	A	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	113231498	rs189357784	G	A	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	113234456	rs2932532	G	A	7457.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=1.879;SOR=0.280;set=HC	GT:AD:AF:DP	1/1:1,293:1.00:294
chr1	113239478	rs2999158	T	C	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	113242488	rs3013431	C	T	10923.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	113244433	rs2279500	T	C	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	113246229	rs937053	T	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	113254125	rs12040903	G	A	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	113254484	rs4839258	A	G	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	113255389	rs10857971	C	T	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	113255686	rs147819439	T	TTG	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=-0.000;DB;DP=34;ExcessHet=3.0103;FS=6.818;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.431;QD=10.45;ReadPosRankSum=-0.493;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	113460676	rs199817200	CAATAAATA	C	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	113471629	.	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.493;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr1	113616382	rs56062000	G	GA	1163.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	113636924	rs1216802	T	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	113657018	.	A	AT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=2.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.801;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr1	113657092	rs1216793	A	C	6441.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	113666349	.	T	TTGTGTGTGTG	143	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	114092306	rs10858004	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	114137013	rs3834733	C	CAT	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	114161116	rs1217200	C	A	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	114191994	rs1743594	G	A	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	114224782	rs11438160	A	AT,ATT	3459.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.887;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.452;QD=15.45;ReadPosRankSum=-0.804;SOR=1.097;set=HC	GT:AD:AF:DP	1/2:38,51,135:0.23,0.60:224
chr1	114234690	rs12138638	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	114240319	rs3835263	T	TA	7399.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=36.45;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	114249382	rs6698586	C	T	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	114249473	.	CTTTT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=1.383;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr1	114267347	rs1230640	C	T	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	114280717	rs2273758	A	C	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	114339956	rs34169583	C	CTAAA	616.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	114372332	rs57877024	TA	T	131.06	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	114377093	rs1599971	A	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	114377148	rs1970559	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	114377568	rs2476601	A	G	10236.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	114400195	rs11386228	G	GA	246.92	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	114401231	rs1217418	A	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	114401904	rs1217419	T	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	114423653	rs1217382	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	114424601	rs1217381	C	T	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	114429340	rs1746860	T	C	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	114438951	rs1217401	A	G	6886.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	114454742	rs35397235	A	T	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	114472218	rs1217441	A	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	114498161	rs371505229	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	114504860	rs41302825	G	A	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	114505000	rs17852555	G	A	7683.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	114508757	rs35061908	G	A	6783.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=3.842;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.70;ReadPosRankSum=-0.368;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:1,263:1.00:264
chr1	114511369	rs116693528	A	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	114512939	rs3811018	A	T	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	114522400	rs115849884	A	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	114641685	rs2774285	A	G	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	114680310	rs41274114	G	A	7589.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	114940215	rs147717859	T	TG	69.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.230;QD=6.35;ReadPosRankSum=-1.393;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	114948281	rs6537825	A	G	9203.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.778;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=3.196;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=-0.544;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,358:1.00:359
chr1	114951220	rs6672519	C	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	114951390	rs71662879	T	A	131.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	114969925	rs36115645	GA	G	2862.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	114973429	rs12083584	T	C	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	115006230	rs34437690	TA	T	218.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.320;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:4,19:0.83:23
chr1	115128087	rs222493	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	115144304	rs12730318	C	T	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	115144703	rs28398	A	G	10123.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr1	115161140	rs12145066	C	T	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	115165472	rs222502	T	A	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	115166350	rs148413143	ATTGT	A	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	115168600	rs7541738	A	T	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	115220419	.	C	CTT	285.75	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	115220420	.	C	CCTTCCT	308.75	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.59;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	115222434	rs761755	G	A	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	115238016	rs68036474	CA	C	280.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.645;QD=6.84;ReadPosRankSum=0.051;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr1	115256669	rs969273	G	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	115398044	rs60659641	GC	G	1467.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	115401136	rs360615	G	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	115416989	rs34594672	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	115576023	rs10776792	A	G	6663.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=3.754;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.24;ReadPosRankSum=1.278;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:1,253:1.00:254
chr1	115631924	rs4240540	C	T	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	115829313	rs6330	G	A	5780.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	116283343	rs9428083	A	G	4261.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	116283526	rs7538337	G	A	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	116287682	rs9428211	T	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	116311198	rs4074537	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	116534952	rs10923941	GC	TT	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	116569530	rs2488429	G	C	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	116577981	rs1935828	G	A	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	116607254	rs1281748	G	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	116609126	rs3833541	TC	T	10195.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	116655183	.	G	GA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.111;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr1	116940481	.	C	CT	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.392;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:166,46:0.22:212
chr1	117487270	rs56209138	G	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	117487710	rs10159095	AT	GA	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	117509981	rs12410651	G	A	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.64;SOR=1.481;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	117509987	rs12403233	C	T	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	117510061	rs12403245	C	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	117527628	rs17579863	T	C	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	117555898	rs2764849	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	117559726	rs2249265	A	G	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	117560036	rs17235766	G	A	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	117602960	rs2244501	C	A	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	117605130	.	C	CT	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=1.797;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:75,31:0.29:106
chr1	117618722	rs1289672	T	C	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	117628869	.	A	ATG	398.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	117631391	rs1555792	T	C	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	117633366	rs2296447	T	C	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	117660608	rs1289655	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	117663913	rs3795655	C	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	117690272	rs10754339	G	A	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	117699714	rs145887761	G	GAT	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	117715987	.	AAC	A	41.73	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,5:0.17:29
chr1	117957288	rs1289948	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	117984776	rs2306444	A	T	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	118053126	rs41506254	T	C	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	118065284	rs34350477	C	G	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	118320644	rs1780028	A	G	78.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.09;QD=19.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	118320859	rs1775749	T	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	118321119	rs114485606	T	C	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	118424269	rs10923444	C	T	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	118429438	rs3054231	G	GACA	374.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	118484265	rs10733098	G	A	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	118501390	rs5777329	C	CT	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.959;QD=3.52;ReadPosRankSum=-1.139;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:44,21:0.32:65
chr1	118514723	.	TAA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.343;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	118526592	rs4347199	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	118530796	rs12040811	C	T	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	118533245	rs10923462	G	T	173.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	118534976	rs12125318	T	C	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	118537074	rs12031260	A	G	7460.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	118550552	rs71663884	G	GA	1717.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	118550555	rs202006843	T	G	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	118550594	rs10923465	C	A	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	118571089	rs17037839	C	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	118623681	rs113203651	TACAC	T	2104.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=40.48;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	118624123	rs2298176	C	T	10286.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	118624336	rs12043257	T	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	118629599	rs12142616	G	A	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.98;SOR=1.410;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	118644430	rs10754367	A	G	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	118657952	rs12133381	C	T	7918.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	118727567	rs76765710	TC	T	474.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	119427467	rs61730011	A	C	5844.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.856;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=-1.041;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:1,227:1.00:228
chr1	120057246	rs1047303	C	A	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	120165826	rs12076924	C	T	15960.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.91;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,616:1.00:616
chr1	120166681	rs12067843	G	A	14622.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr1	120263643	rs550174	T	C	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	120285546	rs543703	G	A	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	120293352	rs667226	T	C	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	120293367	rs667246	T	C	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	120293568	rs668156	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	120336785	rs1052972	C	T	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr1	120378678	rs3009182	C	T	5323.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	120380008	rs3009184	T	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	120381686	rs5777416	G	GT,GTGTGAGTCA	996.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=21;set=Intersection	GT:AF:DP	1/1:1.00:18
chr1	120381687	.	G	C	104	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=59.27;NF=9;NR=0;PP=104;QD=15.4190236164;SC=TGATTATATGGAGCACCTAGC;SbPval=1.0;Source=Platypus;TC=17;TCF=16;TCR=1;TR=9;WE=120381695;WS=120381682;set=Platypus	GT:AD:AF:DP	1/1:8,9:0.53:17
chr1	120381687	rs34302627	G	GTGAGTCAC	996.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.66;QD=52.46;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	120384205	rs2994820	A	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	120387120	rs12405228	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	120478285	rs5025718	T	C	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	120480394	rs2453057	T	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	120512104	rs2493409	T	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	120539331	rs2124109	C	T	6126.77	.	AC=1;AF=0.500;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	0/1:510,337:0.40:847
chr1	120572572	rs146242578	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.67;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	120611554	rs75248693	TT	CG	3654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=3.048;JOINED;MLEAC=1;MLEAF=0.500;MQ=49.64;MQRankSum=-6.265;QD=7.00;ReadPosRankSum=-2.842;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:407,115:0.22:522
chr1	120611715	rs2794167	A	G	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=5.271;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=-1.836;QD=3.80;ReadPosRankSum=3.993;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:176,61:0.26:237
chr1	120611758	rs61790276	G	A	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr1	120611830	rs61790277	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr1	120611876	rs11801062	C	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.500;MQ=49.89;MQRankSum=-3.524;QD=10.64;ReadPosRankSum=0.955;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:39,39:0.50:78
chr1	120611964	rs11810554	G	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:94,97:0.51:191
chr1	120612002	rs372504208	CGG	C	1636.73	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:250,56:0.18:306
chr1	120612006	rs4021006	G	A	3148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.412;MLEAC=1;MLEAF=0.500;MQ=54.26;MQRankSum=-2.430;QD=10.16;ReadPosRankSum=-1.612;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:148,162:0.52:310
chr1	120612013	rs200646249	G	A	2359.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=9.261;MLEAC=1;MLEAF=0.500;MQ=54.12;MQRankSum=-8.705;QD=6.94;ReadPosRankSum=-3.440;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:264,76:0.22:340
chr1	120612014	.	C	A	2359.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.626;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=9.252;MLEAC=1;MLEAF=0.500;MQ=54.08;MQRankSum=-8.692;QD=6.90;ReadPosRankSum=-3.252;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:266,76:0.22:342
chr1	120612040	.	T	TCCTCCGCCG	5681.73	.	AC=1;AF=0.500;AN=2;DP=371;set=Intersection	GT:AD:AF:DP	0/1:104,155:0.60:259
chr1	120612074	.	A	AT	2962	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=139;MMLQ=27;MQ=46.04;NF=8;NR=56;PP=2962;QD=20;SC=GCAGATCCACATGGGGAGGGG;SbPval=0.74;Source=Platypus;TC=110;TCF=17;TCR=93;TR=64;WE=120612082;WS=120612064;set=Platypus	GT:AD:AF:DP	0/1:46,64:0.58:110
chr1	120612154	rs56375229	C	G	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.229;MLEAC=1;MLEAF=0.500;MQ=53.39;MQRankSum=-2.722;QD=12.67;ReadPosRankSum=0.876;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:89,52:0.37:141
chr1	120612163	rs55899574	C	A	1760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.306;MLEAC=1;MLEAF=0.500;MQ=54.17;MQRankSum=-2.991;QD=13.44;ReadPosRankSum=1.221;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:81,50:0.38:131
chr1	120612168	rs11801102	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:81,45:0.36:126
chr1	120612265	rs375584849	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr1	120926044	.	T	G	445.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr1	121115786	rs199825051	C	A	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.68;MQRankSum=-3.504;QD=11.36;ReadPosRankSum=0.004;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:37,54:0.59:91
chr1	121116121	rs201302047	T	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.89;MQRankSum=-3.558;QD=6.70;ReadPosRankSum=-2.362;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	121116678	rs61806689	C	T	6200.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.69;QD=46.62;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	121116688	rs61806690	A	G	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.98;QD=41.18;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	121116933	rs79097880	T	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	121116953	rs78187610	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	144013853	rs6600697	T	C	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:322,144:0.31:466
chr1	144013865	rs6600696	T	G	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:367,188:0.34:555
chr1	144014051	rs1884147	G	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:405,152:0.27:557
chr1	144014068	rs1884146	T	C	5965.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:136,283:0.68:419
chr1	144854412	rs77812232	A	C	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr1	144854454	rs2274129	A	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr1	144854491	rs2798856	T	G	4312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=8.049;QD=18.35;ReadPosRankSum=-1.832;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:122,113:0.48:235
chr1	144854497	rs2653676	A	G	4520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=8.305;QD=18.30;ReadPosRankSum=-2.830;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:125,122:0.49:247
chr1	144854528	rs78461771	A	G	7342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.376;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-8.501;QD=19.95;ReadPosRankSum=2.051;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:179,189:0.51:368
chr1	144854537	rs3851872	T	C	7392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-8.087;QD=19.87;ReadPosRankSum=1.980;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:181,191:0.51:372
chr1	144854581	rs78371650	T	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:307,56:0.15:363
chr1	144854594	rs79028512	G	T	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-11.387;QD=4.30;ReadPosRankSum=3.583;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:262,52:0.17:314
chr1	144854597	rs3851873	T	C	7372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-4.158;QD=24.74;ReadPosRankSum=3.961;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:113,185:0.62:298
chr1	144854597	.	TC	CT	1657	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=46;MMLQ=27;MQ=57.83;NF=24;NR=29;PP=1657;QD=32.272978771;SC=TCTGAAGGAGTCGCTCCTGTT;SbPval=0.42;Source=Platypus;TC=134;TCF=56;TCR=78;TR=53;WE=144854606;WS=144854571;set=Platypus	GT:AD:AF:DP	1/0:81,53:0.40:134
chr1	144854598	rs3863691	C	T	5012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=4.694;QD=16.88;ReadPosRankSum=1.323;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:164,133:0.45:297
chr1	144859720	rs678786	G	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	144860026	rs1699819	G	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:90,57:0.39:147
chr1	144865850	rs1613780	G	T	3519.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:230,188:0.45:418
chr1	144866509	rs924667	G	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:110,54:0.33:164
chr1	144866643	rs1620560	G	A	7349.77	.	AC=1;AF=0.500;AN=2;DB;DP=1057;set=Intersection	GT:AD:AF:DP	0/1:644,411:0.39:1055
chr1	144866662	rs1064044	T	C	6464.77	.	AC=1;AF=0.500;AN=2;DB;DP=961;set=Intersection	GT:AD:AF:DP	0/1:589,370:0.39:959
chr1	144868170	rs1628310	C	T	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:103,92:0.47:195
chr1	144868204	rs1747951	A	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr1	144871738	rs1698605	C	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	144871755	rs1778159	A	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr1	144871782	rs1778158	A	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr1	144871889	rs1698606	A	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr1	144873818	rs1610566	A	G	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr1	144873840	rs1627335	A	G	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:61,65:0.52:126
chr1	144873887	rs1699787	C	T	3389.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:196,172:0.47:368
chr1	144873962	rs11341221	CT	C	8781.73	.	AC=1;AF=0.500;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	0/1:491,363:0.43:854
chr1	144874038	rs1419160	T	C	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:213,157:0.42:370
chr1	144874070	rs1610565	C	T	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:90,81:0.47:171
chr1	144874088	rs1419158	G	C	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr1	144874641	rs1610771	G	C	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr1	144874760	rs1610774	T	C	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:242,163:0.40:405
chr1	144874950	rs1747957	G	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=1.208;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:48,39:0.45:87
chr1	144877176	rs2762875	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr1	144877366	rs1807092	A	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr1	144877390	rs1807093	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr1	144879264	rs2798901	A	G	3903.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:227,208:0.48:435
chr1	144879375	rs1747958	T	C	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:102,89:0.47:191
chr1	144881711	rs937714	T	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr1	144882581	rs1699836	A	G	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr1	144882823	rs1698647	C	T	8450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=7.75;ReadPosRankSum=-1.265;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:632,459:0.42:1091
chr1	144882912	rs1698646	G	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:114,65:0.36:179
chr1	144886063	rs1625285	T	C	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr1	144886092	rs1343472	C	T	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:88,71:0.45:159
chr1	144886197	rs1698624	A	T	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:150,119:0.44:269
chr1	144886409	rs1620507	A	C	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	144890833	rs11447	T	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr1	144892089	rs1614098	G	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-3.058;QD=2.90;ReadPosRankSum=0.502;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr1	144892149	rs1698709	G	A	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.259;QD=6.20;ReadPosRankSum=-0.233;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:110,65:0.37:175
chr1	144910082	rs638780	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	144912153	rs1628172	A	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	144912233	rs1629011	C	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.857;QD=2.98;ReadPosRankSum=-0.453;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:58,20:0.26:78
chr1	144915561	rs1778111	G	A	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:194,144:0.43:338
chr1	144915624	rs1778112	G	A	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr1	144916676	rs1698683	C	T	4149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.947;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:329,230:0.41:559
chr1	144916748	rs1747930	C	G	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-2.270;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:184,90:0.33:274
chr1	144917546	rs1698682	A	G	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:88,72:0.45:160
chr1	144917827	rs11295415	CA	C	392.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr1	144917841	rs1698681	T	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr1	144918034	rs2655804	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.240;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	144918957	rs1061308	T	A	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:266,158:0.37:424
chr1	144919008	rs11296953	AC	A	3173.73	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:206,119:0.37:325
chr1	144919094	rs1698680	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr1	144922109	rs1343469	A	G	6803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=897;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=0.505;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:524,366:0.41:890
chr1	144922171	rs1343470	C	T	7347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;ClippingRankSum=0.000;DB;DP=1054;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.238;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:640,411:0.39:1051
chr1	144922523	rs2455994	C	T	4286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=1.411;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:377,241:0.39:618
chr1	144922583	rs1359300	G	A	5522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=741;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.379;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:434,304:0.41:738
chr1	144923823	rs11268079	TAGGAAGAAACGGCA	T	10662.73	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	144923887	rs12140706	T	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr1	144930571	rs2762866	C	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:99,60:0.38:159
chr1	144930596	rs2762867	C	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:131,75:0.36:206
chr1	144930940	rs2147326	T	C	4040.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:315,213:0.40:528
chr1	144931330	rs2762745	C	T	9202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0.000;DB;DP=1096;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=2.185;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:601,488:0.45:1089
chr1	144931392	rs2798893	G	A	5402.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:450,292:0.39:742
chr1	144931727	rs2985363	G	A	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=0.092;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:82,70:0.46:152
chr1	144946510	rs2488977	C	T	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.218;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	144946768	rs2762733	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:119,50:0.30:169
chr1	144951973	rs77471170	T	C	4543.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:144,216:0.60:360
chr1	144952078	rs71220421	C	A	1912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=0.234;QD=2.52;ReadPosRankSum=0.003;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:596,163:0.21:759
chr1	144952220	rs139438772	C	T	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.42;MQRankSum=-6.176;QD=3.10;ReadPosRankSum=-0.631;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:221,68:0.24:289
chr1	144994658	rs1664022	C	A	8240.77	.	AC=1;AF=0.500;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	0/1:479,426:0.47:905
chr1	144994861	rs2442640	C	T	13333.77	.	AC=1;AF=0.500;AN=2;DB;DP=913;set=Intersection	GT:AD:AF:DP	0/1:283,616:0.69:899
chr1	144994902	rs4649499	G	A	4065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.290;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:785,273:0.26:1058
chr1	145014053	rs548602	T	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr1	145014103	rs1778711	G	C	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:84,80:0.49:164
chr1	145014186	.	GAA	G	2484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.978;ClippingRankSum=0.000;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.896;QD=5.20;ReadPosRankSum=1.792;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:391,87:0.18:478
chr1	145014210	rs1778710	G	A	4667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.603;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.924;QD=6.73;ReadPosRankSum=-1.852;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:546,148:0.21:694
chr1	145014218	rs1778709	G	A	1821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.056;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:644,159:0.20:803
chr1	145014263	rs1778708	C	T	11761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=1321;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.641;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:705,609:0.46:1314
chr1	145014394	rs1107089	C	T	4672.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:222,153:0.41:375
chr1	145014411	rs1778707	T	C	3488.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:163,94:0.37:257
chr1	145015877	rs77741369	G	T	2723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=1166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.777;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:896,242:0.21:1138
chr1	145016020	rs657162	T	G	14315.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.76;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,535:1.00:535
chr1	145016032	rs112952246	C	CA	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.931;QD=1.64;ReadPosRankSum=1.228;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:282,71:0.20:353
chr1	145016035	rs80291027	A	C	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.494;QD=2.37;ReadPosRankSum=2.106;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:287,72:0.20:359
chr1	145017784	rs11300211	CT	C	1205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.582;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-0.560;QD=18.84;ReadPosRankSum=-0.125;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:12,52:0.81:64
chr1	145017789	.	T	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=2.217;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=0.953;QD=3.40;ReadPosRankSum=-0.364;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr1	145017831	.	T	TCCCTCCCCTCCCCTCCCTTCCCCCTCCCTCCCTCCCTC	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=6.435;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=0.628;QD=4.39;ReadPosRankSum=2.861;SOR=2.820;set=HC	GT:AD:AF:DP	0/1:42,6:0.12:48
chr1	145017851	rs2596284	T	C	1888.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=0.635;QD=10.49;ReadPosRankSum=2.427;SOR=1.263;set=HC	GT:AD:AF:DP	0/1:96,84:0.47:180
chr1	145018023	rs2799192	G	T	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-0.264;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:80,66:0.45:146
chr1	145018102	.	G	GAGAA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.458;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr1	145021024	rs1778692	G	C	2661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.507;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:191,77:0.29:268
chr1	145021034	rs674066	C	A	3090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.549;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:242,103:0.30:345
chr1	145021265	rs673110	A	G	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=1.132;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:238,57:0.19:295
chr1	145038686	rs67176560	AG	A	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.559;QD=0.58;ReadPosRankSum=-0.166;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:70,11:0.14:81
chr1	145038736	rs1663882	C	G	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:231,172:0.43:403
chr1	145038815	rs2442664	A	G	36057.77	.	AC=2;AF=1.00;AN=2;DB;DP=1394;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:2,1386:1.00:1388
chr1	145038952	rs1663881	C	T	7195.77	.	AC=1;AF=0.500;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	0/1:474,372:0.44:846
chr1	145039026	rs1663880	T	C	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-1.035;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:257,70:0.21:327
chr1	145039562	rs1663878	C	T	7099.77	.	AC=1;AF=0.500;AN=2;DB;DP=971;set=Intersection	GT:AD:AF:DP	0/1:582,377:0.39:959
chr1	145039594	rs111958438	T	C	3595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.763;ClippingRankSum=0.000;DB;DP=1533;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=1.206;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:1211,310:0.20:1521
chr1	145039633	rs2762750	C	T	5753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=2145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.329;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:1654,473:0.22:2127
chr1	145039821	rs7554603	C	A	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.451;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-2.936;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:191,56:0.23:247
chr1	145074882	rs3845334	G	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.471;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:106,23:0.18:129
chr1	145074939	rs1663854	T	C	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:277,150:0.35:427
chr1	145075208	rs6424335	T	A	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:73,71:0.49:144
chr1	145075519	rs2596337	G	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr1	145075683	rs2762779	C	T	5051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.642;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:323,268:0.45:591
chr1	145075854	rs1663853	G	C	8014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=1005;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-1.336;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:580,415:0.42:995
chr1	145075903	rs2596336	C	T	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DB;DP=818;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=2.025;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:655,157:0.19:812
chr1	145075923	rs6656135	C	T	7229.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:313,360:0.53:673
chr1	145103844	rs2590144	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:148,74:0.33:222
chr1	145103928	rs2596251	G	A	2199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.821;QD=3.31;ReadPosRankSum=-0.868;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:499,166:0.25:665
chr1	145103947	rs2794062	T	C	2157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.846;QD=3.23;ReadPosRankSum=-0.757;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:505,163:0.24:668
chr1	145104052	.	AGT	A	2057.73	.	AC=1;AF=0.500;AN=2;DP=230;set=Intersection	GT:AD:AF:DP	0/1:140,63:0.31:203
chr1	145109430	rs2442653	A	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=1.398;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:129,24:0.16:153
chr1	145109456	rs7553975	C	T	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:247,103:0.29:350
chr1	145109468	rs2442652	A	G	15215.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr1	145109493	rs2442651	C	T	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.748;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:554,115:0.17:669
chr1	145109549	rs2596331	G	T	2630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=1407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.613;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:1136,263:0.19:1399
chr1	145109583	rs2794053	C	A	15016.77	.	AC=1;AF=0.500;AN=2;DB;DP=1649;set=Intersection	GT:AD:AF:DP	0/1:872,771:0.47:1643
chr1	145109661	rs2655551	G	A	5975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=1833;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.281;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:1374,446:0.25:1820
chr1	145109809	rs2596327	T	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-1.100;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr1	145112284	.	CCG	C	2231.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.489;QD=9.15;ReadPosRankSum=1.281;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:176,68:0.28:244
chr1	145112287	rs2794042	T	C	824.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.985;QD=3.37;ReadPosRankSum=-0.205;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:186,59:0.24:245
chr1	145112288	.	G	GCA	2259.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.527;QD=9.04;ReadPosRankSum=1.549;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:182,68:0.27:250
chr1	145112313	rs2596302	T	C	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.029;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:217,73:0.25:290
chr1	145112414	rs2590131	T	C	7091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=1270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-1.836;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:1018,248:0.20:1266
chr1	145112420	rs2794041	C	T	4162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=1292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.252;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:974,314:0.24:1288
chr1	145112428	rs2794040	C	T	7454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DB;DP=1392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-2.714;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:1108,280:0.20:1388
chr1	145112485	rs2794039	C	T	2194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=1417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=1.620;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:1157,254:0.18:1411
chr1	145115658	.	TATTTTTAA	T	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.986;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:184,27:0.13:211
chr1	145115810	rs2655557	A	G	19495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=1681;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-1.652;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:977,695:0.42:1672
chr1	145115820	rs2655558	T	C	4094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=1611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.154;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:1248,355:0.22:1603
chr1	145139088	rs150935736	C	CG	1361.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.63;QD=37.83;SOR=7.223;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	145209612	.	GCCCCGCCAACCGCCGGGGTT	G	4736.73	.	AC=2;AF=1.00;AN=2;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	145209926	rs201021906	C	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.501;ClippingRankSum=0.000;DB;DP=838;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.13;MQRankSum=-7.346;QD=0.06;ReadPosRankSum=4.675;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:735,100:0.12:835
chr1	145273302	rs201646101	A	G	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=1518;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.52;MQRankSum=-1.311;QD=1.62;ReadPosRankSum=0.188;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:1247,268:0.18:1515
chr1	145273345	rs75987820	T	C	3996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=2468;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-1.576;QD=1.63;ReadPosRankSum=-0.836;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:2010,441:0.18:2451
chr1	145273431	rs17421312	A	G	8181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;ClippingRankSum=0.000;DB;DP=2077;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=0.875;QD=4.02;ReadPosRankSum=-2.827;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:1494,542:0.27:2036
chr1	145273473	rs202082259	T	C	2451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=1320;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=53.67;MQRankSum=-1.186;QD=1.88;ReadPosRankSum=-0.104;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:1065,242:0.19:1307
chr1	145273520	rs2793994	G	A	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:316,127:0.29:443
chr1	145281247	rs74721027	T	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.024;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.00;MQRankSum=-0.097;QD=3.81;ReadPosRankSum=-0.659;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr1	145281361	rs147539840	TC	T	5412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=1419;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=50.87;MQRankSum=-9.185;QD=3.81;ReadPosRankSum=-0.100;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:1149,270:0.19:1419
chr1	145281408	rs201164506	C	T	5120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=2535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.63;MQRankSum=-6.209;QD=2.03;ReadPosRankSum=0.092;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:2025,493:0.20:2518
chr1	145281543	rs8002	C	T	7451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DB;DP=1788;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.71;MQRankSum=-1.240;QD=4.17;ReadPosRankSum=0.525;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:1310,477:0.27:1787
chr1	145281613	rs12120756	C	A	6990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=1269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-1.983;QD=5.51;ReadPosRankSum=0.398;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:1016,253:0.20:1269
chr1	145281633	rs28576333	C	A	7309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=1147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-3.623;QD=6.37;ReadPosRankSum=1.520;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:908,239:0.21:1147
chr1	145281656	rs4649852	A	T	6239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=995;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.04;MQRankSum=-3.467;QD=6.27;ReadPosRankSum=3.523;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:783,212:0.21:995
chr1	145281780	rs190671398	T	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=4.020;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=0.455;QD=2.49;ReadPosRankSum=0.794;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:178,44:0.20:222
chr1	145281824	rs4089950	T	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:107,47:0.31:154
chr1	145282093	rs199946317	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:167,64:0.28:231
chr1	145456732	rs375314716	GA	G	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=4.293;QD=0.16;ReadPosRankSum=0.249;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:287,66:0.19:353
chr1	145458154	.	CTTTTT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.25;ReadPosRankSum=0.099;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr1	145507826	rs872786	A	T	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	145510376	rs147038428	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.38;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	145515057	.	C	CA	999.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-0.164;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:26,71:0.73:97
chr1	145531980	rs4384171	T	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	145532010	rs370509438	CTG	C	165.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:57,16:0.22:73
chr1	145532549	rs1328584	T	C	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	145558565	rs11801520	C	G	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	145559918	.	C	CA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.966;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr1	145561008	rs41315699	G	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	145561594	rs6670984	C	T	21308.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.689;ClippingRankSum=0.000;DB;DP=827;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.18;ReadPosRankSum=0.993;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:1,813:1.00:814
chr1	145562881	rs10910824	T	C	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	145566535	rs1819347	C	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	145581644	.	C	CT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.290;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr1	145585317	rs4128488	A	G	7432.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr1	145586780	rs10910829	T	C	10895.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr1	145587858	rs77271458	CT	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-1.696;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr1	145588536	rs9286836	C	T	18891.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,730:1.00:730
chr1	145597116	rs9728311	C	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	145598459	rs9729715	T	C	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	145601861	rs9286837	G	A	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	146514576	rs34026136	T	C	12125.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.000;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.58;MQRankSum=-0.798;QD=25.74;ReadPosRankSum=-1.091;SOR=0.252;set=HC	GT:AD:AF:DP	1/1:1,470:1.00:471
chr1	146656292	rs4950385	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	146672906	rs894469	C	T	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr1	146673178	rs6683215	A	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	146680262	rs2354433	A	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	146685121	rs1530336	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	146687250	rs1822312	A	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	146714255	rs1890040	A	G	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	146714281	rs1890041	C	G	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	146714392	rs1890042	G	C	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	146714588	rs1890043	C	T	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	146724093	rs1890037	A	G	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	146728162	rs61409326	T	TA	2856.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	146736035	rs150672555	A	C	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	146739277	rs4143738	T	C	5163.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	146740576	rs11576360	G	A	8659.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	146747153	rs6680778	T	C	5937.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	146747232	rs6672850	C	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	146748008	rs3831929	CAGCCA	C	1793.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	146748072	rs7534963	A	G	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	146751782	rs7547279	A	C	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	146756222	rs146052781	AAAAC	A	1677.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	146759387	rs148289715	A	G	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	146759528	rs12755465	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	146763089	rs10900333	G	A	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	146763415	rs3737854	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	146766069	rs71083827	C	CAT	5749.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	146767149	rs4950394	G	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	146767320	rs6537	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	147087721	rs3737843	T	A	6061.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	147091972	rs3820129	C	T	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	147096794	rs867270	A	G	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	147096828	rs946902	C	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	147119273	rs1344	G	A	8604.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr1	147121977	rs6593795	C	T	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	147124310	rs2153463	T	G	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	147131465	rs6674938	T	C	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	147131501	rs34675044	A	T	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	147131945	rs2275552	T	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	147381397	rs150194431	GA	G	1831.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=18.404;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.790;QD=10.97;ReadPosRankSum=-0.248;SOR=0.115;set=HC	GT:AD:AF:DP	0/1:35,132:0.79:167
chr1	147381444	rs1532399	A	C	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	147806559	rs10752439	C	T	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr1	147806874	rs2999607	G	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	147806880	rs537191	T	C	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	149379615	.	C	T	416.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.35;QD=23.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	149676401	rs146138154	A	G	2795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=4.164;MLEAC=1;MLEAF=0.500;MQ=52.07;MQRankSum=-7.562;QD=6.72;ReadPosRankSum=-3.799;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:259,157:0.38:416
chr1	149764710	rs3005605	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.69;QD=24.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	149821912	rs138035086	CGGAG	C	7284.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	149872073	rs73006303	G	A	12007.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:1,468:1.00:469
chr1	149880785	rs73006313	G	A	13192.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr1	149880863	rs68002561	A	G	10555.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr1	149881173	rs55909843	A	C	7210.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.51;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	149881183	rs56351279	C	T	6527.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.97;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	149899767	rs60631776	G	A	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	149900985	rs71664710	CA	C	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.696;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:119,53:0.31:172
chr1	149902312	rs16836857	T	G	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	149907175	rs371505833	AC	A	3981.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:3,152:0.98:155
chr1	149908016	rs201450510	A	AAG	8643.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.10;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	149908108	rs1868992	A	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	149916185	rs56929499	C	A	6998.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:1,278:1.00:279
chr1	149920888	rs16838449	G	A	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	149921967	rs73008167	C	G	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	149922139	rs73008171	A	G	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	149931555	rs57182882	G	A	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	149937946	rs16841623	C	T	137.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	150044060	rs138916744	TATTTA	T	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	150049934	rs72692897	A	G	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	150122493	rs4553237	T	C	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.05;QD=25.25;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	150122521	.	T	TCCGACGACCCCCG	4291.73	.	AC=2;AF=1.00;AN=2;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=37.32;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	150122523	.	T	TCC	4340.73	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=41.74;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	150129267	rs10749675	G	A	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	150129593	rs113983437	G	A	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	150130982	rs143570918	G	GC	12426.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	150130983	rs34773647	G	T	12435.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	150131342	rs113590531	G	A	11798.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr1	150199123	rs7522034	G	T	7623.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	150235325	rs200573842	TA	T	2586.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr1	150236314	.	C	CT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=7.882;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.132;QD=3.74;ReadPosRankSum=2.047;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr1	150249101	rs11205354	C	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	150255587	rs2147324	T	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	150258838	rs1122967	C	G	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	150259400	rs9126	A	C	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	150276429	rs471738	G	A	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	150276461	rs471657	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	150277387	rs11205359	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	150280801	rs8006	G	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	150281202	rs580060	A	C	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	150297334	.	CT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=2.210;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr1	150300727	rs834225	T	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	150307270	rs1260408	T	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	150319070	rs201979121	CTAGA	C	863.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	150389964	.	GA	G	649.73	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr1	150416744	rs140068986	A	G	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	150416913	rs16836940	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	150432870	.	GGTT	G	949.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=41.29;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	150483236	rs9661040	A	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	150484395	rs149815479	ACC	A	1205.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	150484987	rs13294	G	A	16110.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr1	150485053	rs146177795	G	GTC	15504.73	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr1	150485187	rs144678642	T	C	11816.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.52;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr1	150485566	rs12031973	T	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.94;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	150485571	rs12031974	T	C	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	150526044	rs41317515	G	C	31238.77	.	AC=2;AF=1.00;AN=2;DB;DP=1234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,1195:1.00:1195
chr1	150527109	rs12095798	T	C	8555.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:1,340:1.00:341
chr1	150528175	rs35233292	GCA	G	2524.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	150528197	rs9730075	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	150528208	rs9728540	C	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	150529322	rs34379037	T	TAA	3018.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	150531008	rs10888382	T	C	12994.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr1	150531050	rs10749657	G	A	15445.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr1	150531170	rs10749658	C	T	19230.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:0,755:1.00:755
chr1	150531380	rs11204664	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	150550019	rs11428742	T	TA	5334.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	150595354	.	G	GA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.902;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr1	150598377	rs141259566	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	150600181	rs2280078	C	T	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	150790289	rs35672926	C	CA	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.340;QD=3.11;ReadPosRankSum=-1.680;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:74,38:0.34:112
chr1	150825757	.	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=1.643;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:148,25:0.14:173
chr1	150849071	rs34415707	AC	A	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=0.914;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	150932977	.	C	CA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.621;QD=1.35;ReadPosRankSum=1.045;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr1	150938616	rs267739	G	A	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	150944541	rs267737	A	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	150956829	rs7536645	A	G	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,269:1.00:270
chr1	150958658	rs76099490	G	A	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	150958977	rs2305814	T	C	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	150960350	rs7532008	A	C	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	150969992	rs2925740	T	C	10724.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr1	150970577	rs2925741	G	T	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	150972017	rs199749393	T	G	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	150972538	rs708909	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	150974162	rs771204	G	A	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	150978404	rs116471628	G	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	150981237	rs2305812	G	A	8110.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.286;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=8.545;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=-1.236;SOR=0.068;set=HC	GT:AD:AF:DP	1/1:4,321:0.99:325
chr1	150990825	rs3738480	A	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	150991285	rs6664220	A	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	150997940	rs3738478	T	C	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	150998221	rs55774303	AT	A	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-2.742;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,36:0.78:46
chr1	150999863	rs55717234	A	G	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr1	151006539	rs3738476	C	A	11918.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:2,462:1.00:464
chr1	151017254	.	G	GT	1032.73	.	AC=2;AF=1.00;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr1	151018566	rs114849704	G	A	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	151019180	rs6587553	A	G	7293.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	151019329	rs115704295	G	C	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	151026815	rs2902810	C	T	8454.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	151028234	rs11204767	G	T	6421.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	151039576	rs57235606	GA	G	433.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.479;QD=13.14;ReadPosRankSum=0.527;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:3,30:0.91:33
chr1	151039609	rs3738481	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	151070252	rs35034487	CA	C	980.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.601;QD=10.01;ReadPosRankSum=0.532;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:20,78:0.80:98
chr1	151089888	rs59454556	A	C	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	151104598	rs4971005	A	G	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	151105824	rs4971006	C	G	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	151106823	rs12085364	A	G	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	151106942	rs12089976	G	A	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	151108137	rs4971007	T	G	15209.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,598:1.00:598
chr1	151114882	rs11464219	C	CT	4137.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	151134579	rs11459817	T	TA	410.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	151140888	.	CTT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.497;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:47,9:0.16:56
chr1	151143166	rs6689566	C	T	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	151146186	rs7552226	C	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	151146276	rs7521416	T	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	151149601	rs6656261	A	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=25.46;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	151205303	rs7544947	A	G	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	151209063	rs12407426	C	T	15618.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.29;QD=25.56;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,611:1.00:611
chr1	151209297	.	C	CTT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=-0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.80;ReadPosRankSum=0.281;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	151210789	rs7532935	C	T	9595.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	151212399	rs141190258	C	CCTT	4827.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	151219630	rs191877005	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	151227371	rs3811405	A	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	151237589	rs3216063	TC	T	2025.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=27.75;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	151238222	rs2275900	G	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	151239051	rs7489	T	C	10207.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	151239570	rs10888408	C	T	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	151254041	rs3811406	T	C	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	151263782	rs10788803	A	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	151280400	rs1536617	C	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	151288172	rs1056847	G	A	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	151288391	rs1752379	A	G	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	151314379	rs1752387	T	C	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	151316161	rs1752386	G	A	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	151337788	rs10788804	A	G	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	151372138	rs7172	G	A	9440.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr1	151372770	rs2495390	A	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	151373200	rs2495391	T	C	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	151377248	rs6667714	T	C	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	151379250	rs2274535	G	A	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	151380505	.	AAAG	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=1.279;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr1	151381320	rs3831142	GA	G	1634.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.248;QD=21.80;ReadPosRankSum=-0.555;SOR=0.505;set=HC	GT:AD:AF:DP	1/1:1,74:0.99:75
chr1	151384052	.	T	TA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.102;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:88,22:0.20:110
chr1	151384711	rs1887545	A	G	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	151384733	rs3748550	G	A	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	151395782	rs2274533	T	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	151396037	rs2274534	A	C	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr1	151400942	rs11204811	A	C	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	151402045	rs6587577	A	G	5366.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	151491881	rs181234406	C	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	151518479	rs34986731	C	CT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.526;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr1	151535020	.	ATC	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.258;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chr1	151538784	.	TTC	T	71	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=26;MQ=59.82;NF=0;NR=4;PP=71;QD=19.25;SC=GTTTATTGCTTTCTCTCTCTC;SbPval=1.0;Source=Platypus;TC=24;TCF=2;TCR=22;TR=4;WE=151538793;WS=151538774;set=Platypus	GT:AD:AF:DP	1/0:20,4:0.17:24
chr1	151538881	rs115617775	A	G	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	151542099	rs3748610	G	T	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	151546931	rs6660238	A	G	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	151665562	rs35971824	G	GT,GTT	2804.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.179;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.30;MQRankSum=0.521;QD=18.21;ReadPosRankSum=0.354;SOR=1.085;set=HC	GT:AD:AF:DP	1/2:12,114,28:0.74,0.18:154
chr1	151665857	rs3215299	CT	C	7649.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	151675618	rs1308150	T	C	5453.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	151679441	rs1308152	T	C	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	151679596	rs1308153	G	A	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	151679900	rs10888428	C	T	8435.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	151686983	rs939592	T	A	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	151700189	rs72506285	C	CCTG	2745.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	151733379	.	CA	C	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=0.056;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:94,67:0.42:161
chr1	151734136	rs1196454	G	A	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	151735545	rs1196455	A	G	13764.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:1,529:1.00:530
chr1	151740479	rs1196457	C	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	151740666	rs2495397	T	C	9309.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	151747799	rs1781419	G	A	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	151748829	rs3811413	G	A	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	151753805	rs11355113	AT	A	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=-0.711;SOR=1.852;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr1	151773387	rs1521179	G	A	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	151773851	rs61746299	T	A	14629.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.71;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:0,528:1.00:528
chr1	151785628	rs79662743	C	T	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	151789588	rs151171878	C	CTGTGTG,CTGTGTGTG	1006.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=21;set=Intersection	GT:AF:DP	1/2:0.37,0.63:19
chr1	151789609	rs56273334	C	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	151789611	rs55841824	C	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	151789647	rs12144914	T	G	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	151811226	rs6673556	G	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	151820298	rs6587624	G	C	7609.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	151820324	rs6587625	T	C	7096.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	151825991	rs7556386	G	T	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	151867560	rs3762427	G	A	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	151881885	rs3748805	A	C	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	152009530	rs3811422	T	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	152079823	rs1131473	C	G	5671.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	152079989	rs1131471	T	G	9997.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	152081921	rs2496253	G	C	11649.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr1	152085505	rs2515663	A	C	6580.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	152128065	.	C	T	35086.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DP=1590;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;MQRankSum=3.717;QD=22.16;ReadPosRankSum=14.261;SOR=0.686;set=HC	GT:AD:AF:DP	1/1:190,1393:0.88:1583
chr1	152185500	rs12726613	C	G	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	152185750	rs12729662	G	A	23711.77	.	AC=2;AF=1.00;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	1/1:0,929:1.00:929
chr1	152191687	rs34625286	A	G	28733.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.70;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,673:1.00:673
chr1	152191696	rs34188717	G	C	27220.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.19;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,616:1.00:616
chr1	152192687	rs6587648	T	C	23168.77	.	AC=2;AF=1.00;AN=2;DB;DP=907;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.89;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,895:1.00:895
chr1	152192978	rs6587649	T	C	22006.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:0,834:1.00:834
chr1	152193052	rs6587650	A	G	21309.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	1/1:2,829:1.00:831
chr1	152193162	rs41266136	C	T	9662.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr1	152193547	rs6587653	G	A	11781.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:1,438:1.00:439
chr1	152193605	rs12741518	C	T	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	152195579	rs74127901	G	A	6172.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	152195728	rs34061715	AT	A	1520.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.061;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.868;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.382;QD=17.09;ReadPosRankSum=0.722;SOR=0.375;set=HC	GT:AD:AF:DP	1/1:5,84:0.94:89
chr1	152276045	rs200306807	A	G	1944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.838;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-19.082;QD=5.06;ReadPosRankSum=0.695;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:313,71:0.18:384
chr1	152276049	rs201440321	T	C	1992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.254;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-19.593;QD=4.93;ReadPosRankSum=2.161;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:333,71:0.18:404
chr1	152276067	rs199804319	C	G	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.799;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-18.196;QD=3.27;ReadPosRankSum=6.933;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:437,73:0.14:510
chr1	152276072	rs200851476	A	G	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.868;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-18.555;QD=2.94;ReadPosRankSum=8.194;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:480,75:0.14:555
chr1	152276699	rs12728605	A	G	1125.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.72;MQRankSum=2.449;QD=24.47;ReadPosRankSum=2.878;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:2,44:0.96:46
chr1	152276761	.	T	C	1094.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.34;QD=43.79;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	152276762	rs12732870	T	A	1094.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.34;QD=43.79;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	152276777	rs12746216	G	A	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.36;QD=53.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	152276782	rs12746218	G	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.31;QD=49.23;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	152277153	.	G	T	1536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.944;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=67.972;MLEAC=1;MLEAF=0.500;MQ=48.94;MQRankSum=1.839;QD=22.60;ReadPosRankSum=-3.678;SOR=6.869;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr1	152277156	.	C	G	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.553;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=60.560;MLEAC=1;MLEAF=0.500;MQ=50.41;MQRankSum=3.182;QD=25.02;ReadPosRankSum=-3.603;SOR=5.184;set=HC	GT:AD:AF:DP	0/1:34,41:0.55:75
chr1	152277159	.	C	T	1918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.849;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=39.201;MLEAC=1;MLEAF=0.500;MQ=51.31;MQRankSum=3.903;QD=22.84;ReadPosRankSum=-3.617;SOR=3.328;set=HC	GT:AD:AF:DP	0/1:30,54:0.64:84
chr1	152277168	rs3091276	A	G	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.48;QD=33.44;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	152277396	rs6681433	T	C	22171.77	.	AC=2;AF=1.00;AN=2;DB;DP=861;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=26.12;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,849:1.00:849
chr1	152277717	rs9436066	C	A	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.29;QD=26.26;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	152277822	rs3126069	T	C	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.19;QD=42.80;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	152277826	rs2065957	A	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.45;QD=41.04;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	152278689	rs57672167	C	A	50595.77	.	AC=2;AF=1.00;AN=2;DB;DP=1893;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.85;QD=27.20;SOR=1.232;set=HC	GT:AD:AF:DP	1/1:0,1860:1.00:1860
chr1	152278814	rs2184952	C	T	7452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.661;ClippingRankSum=0.000;DB;DP=3659;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-51.647;QD=2.04;ReadPosRankSum=0.732;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:2932,717:0.20:3649
chr1	152279729	rs3126072	C	T	35511.77	.	AC=2;AF=1.00;AN=2;DB;DP=1395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=25.62;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,1386:1.00:1386
chr1	152279841	rs3126074	G	C	11389.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr1	152280665	.	G	A	1639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.188;ClippingRankSum=0.000;DP=1125;ExcessHet=3.0103;FS=15.850;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-26.123;QD=1.47;ReadPosRankSum=-9.823;SOR=2.690;set=HC	GT:AD:AF:DP	0/1:1017,101:0.09:1118
chr1	152280669	.	TGA	CTC	2508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.876;ClippingRankSum=0.000;DP=1196;ExcessHet=3.0103;FS=12.678;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-25.831;QD=2.11;ReadPosRankSum=-10.466;SOR=2.243;set=HC	GT:AD:AF:DP	0/1:1064,124:0.10:1188
chr1	152280685	.	C	A	6319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=16.332;ClippingRankSum=0.000;DP=1422;ExcessHet=3.0103;FS=9.053;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-22.401;QD=4.47;ReadPosRankSum=-11.977;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:1181,232:0.16:1413
chr1	152280687	.	CA	TG	7224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=17.561;ClippingRankSum=0.000;DP=1432;ExcessHet=3.0103;FS=9.156;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-22.451;QD=5.08;ReadPosRankSum=-11.396;SOR=1.487;set=HC	GT:AD:AF:DP	0/1:1186,237:0.17:1423
chr1	152280691	rs117945779	A	T	7582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=19.197;ClippingRankSum=0.000;DB;DP=1528;ExcessHet=3.0103;FS=6.974;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-20.840;QD=5.00;ReadPosRankSum=-12.036;SOR=1.359;set=HC	GT:AD:AF:DP	0/1:1229,288:0.19:1517
chr1	152280736	rs78974621	T	C	26956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.677;ClippingRankSum=0.000;DB;DP=2048;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-17.465;QD=13.23;ReadPosRankSum=2.808;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:1293,744:0.37:2037
chr1	152280759	rs2338554	A	G	19856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;ClippingRankSum=0.000;DB;DP=1885;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-15.753;QD=10.59;ReadPosRankSum=9.083;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:1092,783:0.42:1875
chr1	152280782	rs2184953	A	G	70328.77	.	AC=2;AF=1.00;AN=2;DB;DP=1580;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.72;QD=44.71;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,1573:1.00:1573
chr1	152280788	rs66954353	T	G	44475.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.917;ClippingRankSum=0.000;DB;DP=1495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.67;MQRankSum=-0.675;QD=29.89;ReadPosRankSum=-0.678;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:4,1484:1.00:1488
chr1	152280864	rs2184954	A	G	13848.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr1	152280900	rs74129452	T	G	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=9.936;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-17.466;QD=3.73;ReadPosRankSum=0.021;SOR=1.335;set=HC	GT:AD:AF:DP	0/1:326,110:0.25:436
chr1	152281522	.	CA	TG	8636.77	.	AC=2;AF=1.00;AN=2;DP=205;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	152281534	rs113544881	A	T	8428.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	152281691	rs36006086	G	A	31887.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=1324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;MQRankSum=20.120;QD=24.19;ReadPosRankSum=1.419;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:38,1280:0.97:1318
chr1	152281745	rs62623409	G	T	23128.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=906;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;MQRankSum=15.871;QD=25.64;ReadPosRankSum=5.033;SOR=0.572;set=HC	GT:AD:AF:DP	1/1:10,892:0.99:902
chr1	152281875	.	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.077;ClippingRankSum=0.000;DP=374;ExcessHet=3.0103;FS=71.213;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-18.405;QD=0.52;ReadPosRankSum=-3.578;SOR=6.523;set=HC	GT:AD:AF:DP	0/1:342,26:0.07:368
chr1	152281877	.	A	G	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.560;ClippingRankSum=0.000;DP=378;ExcessHet=3.0103;FS=58.555;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-17.462;QD=1.42;ReadPosRankSum=-4.137;SOR=4.548;set=HC	GT:AD:AF:DP	0/1:340,30:0.08:370
chr1	152281884	.	T	C	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.689;ClippingRankSum=0.000;DP=409;ExcessHet=3.0103;FS=24.537;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-14.874;QD=2.83;ReadPosRankSum=-5.555;SOR=2.680;set=HC	GT:AD:AF:DP	0/1:352,50:0.12:402
chr1	152281890	.	C	T	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.469;ClippingRankSum=0.000;DP=444;ExcessHet=3.0103;FS=13.715;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-14.566;QD=2.99;ReadPosRankSum=-5.211;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:372,65:0.15:437
chr1	152281907	.	A	G	4689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.096;ClippingRankSum=0.000;DP=582;ExcessHet=3.0103;FS=8.630;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-12.455;QD=8.17;ReadPosRankSum=-6.401;SOR=1.331;set=HC	GT:AD:AF:DP	0/1:433,141:0.25:574
chr1	152281911	.	T	C	4865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.966;ClippingRankSum=0.000;DP=628;ExcessHet=3.0103;FS=5.910;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-12.659;QD=7.86;ReadPosRankSum=-5.699;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:459,160:0.26:619
chr1	152282092	.	T	C	6154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;ClippingRankSum=0.000;DP=889;ExcessHet=3.0103;FS=6.042;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-9.433;QD=7.00;ReadPosRankSum=-4.751;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:658,221:0.25:879
chr1	152282101	.	T	C	4974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.360;ClippingRankSum=0.000;DP=832;ExcessHet=3.0103;FS=11.260;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-10.914;QD=6.05;ReadPosRankSum=-7.352;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:659,163:0.20:822
chr1	152282104	.	C	T	4583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.065;ClippingRankSum=0.000;DP=817;ExcessHet=3.0103;FS=11.619;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-11.729;QD=5.68;ReadPosRankSum=-8.605;SOR=1.429;set=HC	GT:AD:AF:DP	0/1:656,151:0.19:807
chr1	152282111	.	T	C	3725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.176;ClippingRankSum=0.000;DP=793;ExcessHet=3.0103;FS=9.330;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-12.958;QD=4.75;ReadPosRankSum=-11.145;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:655,129:0.16:784
chr1	152282794	rs12750081	G	A	6040.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	152282910	rs71626706	G	C	14721.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr1	152282952	rs12732920	A	G	16150.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:1,631:1.00:632
chr1	152283053	rs12750571	G	A	11378.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	152283236	rs11581433	T	C	8632.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	152283975	rs66831674	A	G	9764.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,384:1.00:385
chr1	152284854	rs3120653	A	G	11319.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr1	152285099	rs74129461	C	T	17212.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr1	152285930	rs11584340	G	A	14331.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr1	152286002	rs2011331	T	C	16965.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr1	152286367	rs41267154	C	A	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	152287341	rs34224823	CT	C	203.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=1.006;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr1	152328095	rs16842865	C	T	37363.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.768;ClippingRankSum=0.000;DB;DP=1468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=-0.047;QD=25.84;ReadPosRankSum=1.534;SOR=0.252;set=HC	GT:AD:AF:DP	1/1:1,1445:1.00:1446
chr1	152328411	rs6679449	A	G	13469.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.63;QD=29.47;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chr1	152329852	rs6587667	C	T	14407.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr1	152331240	rs3818831	G	A	6557.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	152552285	rs512208	C	A	11104.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr1	152636843	rs9793541	A	T	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	152681543	rs1332496	T	C	18043.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,704:1.00:704
chr1	152681680	rs6143428	C	CAGCTCTGGGGGCTGCTGT	19938.73	.	AC=2;AF=1.00;AN=2;DB;DP=722;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=44.01;SOR=1.500;set=HC	GT:AD:AF:DP	1/1:2,451:1.00:453
chr1	152691943	rs1332499	G	A	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	152692074	rs1332500	G	C	12324.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr1	152692472	rs873775	A	C	23898.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	1/1:0,906:1.00:906
chr1	152692588	rs944682	A	G	18057.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,699:1.00:699
chr1	152692781	rs3814350	G	T	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	152692862	rs3814351	G	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	152732436	rs4845480	G	C	8009.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	152733301	rs4329520	T	A	37105.77	.	AC=2;AF=1.00;AN=2;DB;DP=1461;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,1418:1.00:1418
chr1	152759950	rs11205106	A	G	12521.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr1	152777868	rs36107483	A	G	26179.77	.	AC=2;AF=1.00;AN=2;DB;DP=1021;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.73;QD=25.74;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,1017:1.00:1017
chr1	152777964	rs17624493	G	A	9603.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=25.68;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr1	152882982	.	C	CAGCAGCAGGAGGGGCAGCTGGAGCTCTCTG	3457.73	.	AC=2;AF=1.00;AN=2;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=76.84;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	152944594	rs3170863	C	T	11212.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr1	152957573	rs1611760	T	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	152957832	rs1611762	C	A	10671.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	152957887	rs1611764	G	A	11648.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:1,422:1.00:423
chr1	152975495	rs2075739	G	A	9498.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	152975658	rs67156933	AGAGCCAGGCTGTACCAAGGTCCCT	A	1834.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	152975763	rs1977734	C	A	4242.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	152975829	rs1970328	A	G	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=32.31;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	152975941	rs1055935	C	G	9190.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	153004721	rs1334848	A	T	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	153004778	rs3820141	C	T	8211.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	153004809	rs3181787	T	C	11909.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr1	153004848	rs3795381	T	C	25739.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.46;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr1	153004853	rs3795382	C	T	26302.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=43.84;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,600:1.00:600
chr1	153004983	rs12195	C	T	11603.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr1	153005156	rs2711	C	T	15413.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:2,600:1.00:602
chr1	153190590	rs35221508	G	GT	2797.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	153233697	.	C	T	3011.77	.	AC=2;AF=1.00;AN=2;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	153270362	rs2771110	C	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	153271524	rs821431	C	T	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	153277423	rs843971	C	T	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	153277660	rs2771112	A	T	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	153279462	rs66966700	TAAG	T	5682.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=44.40;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	153282892	rs821424	C	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.57;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	153283004	rs821423	C	T	6886.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	153314153	rs3006448	C	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	153314347	rs3006449	C	T	131.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	153315467	rs5777858	T	TAAG	1357.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	153315579	rs3014863	A	G	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	153315784	rs1865234	T	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	153320334	rs3006457	T	C	4805.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.923;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=1.428;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:1,189:0.99:190
chr1	153320372	rs3006458	T	G	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	153320581	rs3006459	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	153410822	rs10888561	C	A	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	153412392	rs3006428	T	G	9378.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	153431406	rs3014837	C	G	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	153507176	rs2228293	C	T	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	153513731	rs58867593	T	C	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	153513742	rs61122263	G	A	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	153513900	rs7529714	T	C	9658.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	153513979	rs7535274	A	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.17;SOR=1.926;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	153513985	rs7529817	T	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.96;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	153517092	rs138957616	GC	G	13008.73	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr1	153517172	rs1050923	T	C	21247.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,820:1.00:820
chr1	153520138	rs41265162	C	T	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	153520203	rs41265164	G	A	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	153520400	rs56089062	T	C	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr1	153520418	rs149215700	C	T	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	153520714	rs34557489	T	TC	1486.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	153520784	rs28718953	C	A	8597.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=3.867;MLEAC=2;MLEAF=1.000;MQ=59.91;MQRankSum=-0.037;QD=45.25;ReadPosRankSum=-0.547;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:1,189:0.99:190
chr1	153520790	rs28594230	G	C	8998.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.868;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=-0.035;QD=42.45;ReadPosRankSum=-0.842;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:1,211:1.00:212
chr1	153520804	rs28452456	A	G	7528.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=3.700;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=-0.029;QD=25.70;ReadPosRankSum=-1.579;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:1,292:1.00:293
chr1	153520954	rs36022742	C	T	11499.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr1	153521018	rs28548347	A	C	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	153533898	rs8401	A	G	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	153535848	.	C	CA	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.583;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:126,43:0.25:169
chr1	153535932	.	G	C	8206.77	.	AC=2;AF=1.00;AN=2;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	153587256	rs11548102	A	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	153587308	rs11548104	C	T	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	153588208	rs9792963	G	A	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	153588279	rs9792967	G	A	6670.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	153600778	rs3806233	G	A	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	153604029	rs1046379	C	T	8044.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	153604112	rs1046381	G	A	9321.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	153609039	rs4845557	T	C	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	153635425	rs3795396	G	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	153636432	.	TTACTAC	T	237	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=1;HapScore=2;MGOF=17;MMLQ=27;MQ=60.0;NF=2;NR=2;PP=237;QD=60.5;SC=AATTTCAGAGTTACTACTACT;SbPval=0.58;Source=Platypus;TC=7;TCF=3;TCR=4;TR=4;WE=153636445;WS=153636424;set=Platypus	GT:AD:AF:DP	1/1:3,4:0.57:7
chr1	153636465	.	CTA	C	716.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.84;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	153636468	.	CTACT	C	717.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.89;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	153636472	.	T	C	368	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=2;MGOF=14;MMLQ=25;MQ=60.0;NF=13;NR=6;PP=368;QD=21.1984848709;SC=CTACTACTACTAGTAAATAAG;SbPval=0.57;Source=Platypus;TC=19;TCF=13;TCR=6;TR=19;WE=153636480;WS=153636462;set=Platypus	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	153636860	rs4351684	A	G	7398.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	153637617	rs3862047	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr1	153642835	rs6663046	G	C	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	153656352	rs9662664	T	G	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	153658724	rs10908420	C	T	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	153660514	rs11295572	AC	A	904.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	153661374	rs34402066	CG	C	21623.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=841;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.96;ReadPosRankSum=1.211;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:2,831:1.00:833
chr1	153662544	.	ATCTC	A	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.445;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr1	153662615	.	T	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-0.000;QD=6.54;ReadPosRankSum=1.579;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	153662617	rs55865334	T	A	507.27	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr1	153665919	rs5777879	T	TC	595.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	153701376	rs12074957	G	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	153732708	.	CAAAAA	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=-0.283;QD=1.46;ReadPosRankSum=-0.205;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr1	153742534	.	GGTGT	G	257.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	153743317	rs4345834	G	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	153747616	rs6682411	C	T	16524.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr1	153748219	rs36064263	C	T	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	153784666	rs11264420	CT	C	669.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=5.131;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.732;QD=10.15;ReadPosRankSum=1.702;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:10,56:0.85:66
chr1	153791165	rs147317448	AGAG	A	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	153800931	rs144104082	TACACACACAC	TAC,T	234.79	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=13;set=Intersection	GT:AF:DP	1/1:1.00:6
chr1	153954816	.	TAC	T	176	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=26;NF=0;NR=6;PP=176;QD=31.1666666667;SC=CACACATACATACACACACAC;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=6;WE=153954825;WS=153954806;set=Platypus	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	153955601	.	C	CA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=0.891;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:162,35:0.18:197
chr1	154033329	rs72070929	ATAAG	A	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	154061855	rs2066135	T	G	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	154108387	rs3001361	G	A	5740.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	154112167	rs2500223	A	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=11.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=3.059;SOR=3.407;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr1	154207834	.	AT	A	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.471;QD=1.76;ReadPosRankSum=-1.359;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr1	154227292	rs11412846	G	GT	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=4.554;QD=1.08;ReadPosRankSum=-0.860;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:238,63:0.21:301
chr1	154285052	rs11265530	G	A	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	154285078	rs11581043	T	G	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.87;QD=24.44;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	154293675	rs6668968	G	A	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.85;QD=25.85;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	154294656	rs1194607	T	C	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	154295592	rs6685323	C	T	7637.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	154303705	rs12727865	C	T	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	154303976	rs6702754	T	C	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	154305010	rs1209264	A	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	154305190	rs12077870	G	C	5577.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	154310223	rs11448687	G	GA	1647.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr1	154317281	rs9660850	G	A	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	154318172	rs1979575	A	G	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	154321072	rs1194591	A	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	154401972	rs6694817	T	C	7407.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	154407419	rs7518199	A	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	154407713	rs7521458	T	C	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	154408340	rs4845371	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	154409893	rs71586015	A	AT,ATT	2251.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=4.120;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.76;MQRankSum=0.362;QD=15.53;ReadPosRankSum=0.450;SOR=0.540;set=HC	GT:AD:AF:DP	1/2:19,98,28:0.68,0.19:145
chr1	154420402	rs7512646	G	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.37;QD=25.93;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	154422580	.	C	CTGTGTGTGTG	646.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	154426970	rs2228145	A	C	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	154437896	rs2229238	T	C	7971.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	154442960	rs11265621	G	A	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	154459197	rs4845633	C	G	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	154474131	rs4845635	C	G	8756.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	154474557	rs6703672	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	154479657	rs10654618	C	CAT	1869.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	154479670	rs6664608	C	T	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	154492702	rs10908842	G	A	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	154493721	rs6684225	T	C	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	154514331	rs4845647	C	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	154516477	rs12750774	G	A	19338.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	1/1:1,736:1.00:737
chr1	154516571	rs6678164	T	C	15067.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr1	154523215	rs4520411	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	154523588	rs10908849	T	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	154524973	rs12144146	A	G	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	154528086	rs4078519	T	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	154557685	rs9427094	C	T	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	154561261	rs9427095	G	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	154562624	rs201932953	CG	C	330.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=1.145;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:66,27:0.29:93
chr1	154562625	rs7532276	G	C	1152.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-0.976;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:31,62:0.67:93
chr1	154562629	rs60407842	C	A	2803.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.79;ReadPosRankSum=1.735;SOR=0.439;set=HC	GT:AD:AF:DP	1/1:3,120:0.98:123
chr1	154571174	rs143817514	T	TGGA	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	154573967	rs2229857	T	C	13738.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,536:1.00:536
chr1	154574820	rs1466731	T	C	15185.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr1	154575040	rs1802645	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	154600372	rs6426859	A	G	7592.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=4.013;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	154687229	rs12134719	A	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	154709682	rs35539682	TG	T	852.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.61;QD=25.08;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	154744852	rs1131820	A	G	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:4,206:0.98:210
chr1	154832304	rs4845397	T	C	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	154832322	rs1218586	A	C	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	154842199	.	G	GGCTGCT,GGCTGCTGCT	5755.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=426;set=Intersection	GT:AF:DP	1/2:0.19,0.77:242
chr1	154917701	rs906594	A	G	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr1	154948327	rs12087657	G	T	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	154987704	rs141845046	C	T	12731.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr1	155006450	rs74520550	CC	AG	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	155014426	rs55668940	G	A	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	155026942	rs6427128	A	C	13711.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.920;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.11;ReadPosRankSum=1.348;SOR=0.211;set=HC	GT:AD:AF:DP	1/1:2,544:1.00:546
chr1	155033334	rs12743272	G	A	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	155058663	rs17723260	G	A	22471.77	.	AC=2;AF=1.00;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	1/1:0,889:1.00:889
chr1	155106054	rs4390169	A	G	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	155106227	rs4745	A	T	11077.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	155162067	rs4072037	C	T	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	155178782	rs760077	A	T	8264.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	155181843	rs2974935	G	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	155182164	rs2075570	C	T	8654.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	155184975	rs140081212	A	G	14821.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr1	155186729	rs28445596	T	C	8061.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.08;QD=25.59;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	155186742	rs1057941	G	A	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;QD=25.78;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	155205669	rs28559737	G	T	9450.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	155280104	.	CT	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-1.906;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:59,25:0.30:84
chr1	155294274	rs914616	A	G	8177.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	155294772	rs4971075	A	G	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	155313047	rs4971051	T	C	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	155322438	rs150033711	T	TA	601.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.723;QD=15.84;ReadPosRankSum=1.272;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:5,33:0.87:38
chr1	155408635	rs4971053	T	C	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	155532316	rs12403379	T	C	29806.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=46.21;SOR=1.024;set=HC	GT:AD:AF:DP	1/1:0,645:1.00:645
chr1	155532325	rs12403380	T	C	34644.77	.	AC=2;AF=1.00;AN=2;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=47.01;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,737:1.00:737
chr1	155532332	rs34869594	T	C	37209.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=46.17;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,806:1.00:806
chr1	155532341	rs61812107	T	C	38526.77	.	AC=2;AF=1.00;AN=2;DB;DP=916;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=42.86;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,899:1.00:899
chr1	155618415	rs5777949	CT	C	9383.73	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	155691191	.	G	GTA	82	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=82;QD=45.0;SC=ATGTATGTATGTATATATATA;SbPval=1.0;Source=Platypus;TC=4;TCF=3;TCR=1;TR=2;WE=155691199;WS=155691181;set=Platypus	GT:AD:AF:DP	0/1:2,2:0.50:4
chr1	155701055	rs111619259	C	CA	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=4.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=0.731;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:106,34:0.24:140
chr1	155737385	rs849712	C	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.92;QD=27.18;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	155737425	.	AACAC	A	440	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=2;MGOF=22;MMLQ=27;MQ=49.4;NF=0;NR=10;PP=440;QD=44.3;SC=GATCAAGAGAAACACACACAC;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=10;WE=155737436;WS=155737415;set=Platypus	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	155746340	rs60525991	CT	C	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	155755097	rs822021	G	A	5166.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	155785578	rs148569012	CAACT	C	8918.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	155822971	rs822490	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	155823002	rs822491	T	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	155829360	rs1749412	C	A	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	155837865	rs822522	G	C	12024.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	155838267	rs822521	T	C	10179.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	155850558	rs822508	T	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	155850811	rs822509	G	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	155870416	rs1749409	G	A	9681.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=1.913;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:2,384:0.99:386
chr1	155880573	rs493446	C	G	6144.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	155880760	rs5777961	C	CA	1754.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	155891045	rs625658	A	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	155891877	rs4020747	C	CAG	1500.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	155899020	rs539602	A	T	8069.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	155903310	rs4661150	T	C	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	155903408	rs4661151	C	T	7129.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	155904177	rs2275079	T	C	52478.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=2048;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=0.758;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:4,2027:1.00:2031
chr1	155904392	rs2275081	G	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	155912486	rs2152051	T	C	11995.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	155917880	rs1010033	T	A	13057.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr1	155928232	rs2364404	T	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.92;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	155928242	rs2886069	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	155931368	rs4661175	G	A	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	155955076	rs4661216	A	G	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	155979571	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-1.829;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr1	156013676	rs34673835	C	T	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	156025096	rs7541	C	T	17239.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr1	156131095	rs201004039	C	CGGGGCGG	789.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=6.990;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=52.65;ReadPosRankSum=1.159;SOR=2.946;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr1	156132909	rs143862668	GCA	G	7366.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr1	156146218	rs12401573	C	T	14579.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:1,556:1.00:557
chr1	156169610	rs2072499	A	G	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	156182710	rs2241107	T	C	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	156202173	rs1052053	A	G	11442.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:2,451:1.00:453
chr1	156206121	rs1052067	G	A	9647.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr1	156247907	rs2248273	C	T	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	156255833	rs2842883	G	C	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	156256257	rs139893518	G	A	12161.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr1	156279210	rs3001784	T	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	156280296	rs72414608	GATAA	G	2794.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=43.00;SOR=1.646;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	156287360	rs2249790	C	T	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	156288906	.	G	GTT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.415;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr1	156303527	rs2764402	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	156351699	rs3748569	G	A	12276.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:2,481:1.00:483
chr1	156351792	rs3748568	G	A	7280.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	156376680	rs6662064	A	G	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	156438429	rs182171712	T	C	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	156446242	rs2274316	C	A	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	156446450	rs12131289	C	T	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	156446903	rs2274317	T	C	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	156450740	rs1925950	G	A	6851.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	156452870	rs2282286	G	A	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	156496188	rs6427315	A	G	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	156498673	rs1171564	T	A	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	156499969	rs1171566	T	C	17853.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:1,651:1.00:652
chr1	156500128	rs746505	T	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	156502991	rs1609666	A	G	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	156503541	rs6699212	T	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	156509552	rs1171570	C	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	156520173	rs1778819	T	A	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	156526234	rs2489139	C	T	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	156526387	rs11264498	C	G	11074.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr1	156526444	rs2488269	T	C	7267.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	156531871	rs1171545	A	G	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	156532344	rs7548309	T	G	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	156532908	rs16837492	C	A	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	156532977	rs1171547	T	C	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	156534525	rs4661184	A	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	156534539	rs4661185	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	156536123	rs2066378	T	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	156536133	rs4382715	A	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.68;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	156536221	rs2066377	G	C	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	156536251	rs947662	T	C	8500.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	156536353	rs947663	A	G	9861.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=5.741;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=12.442;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.82;ReadPosRankSum=2.036;SOR=0.151;set=HC	GT:AD:AF:DP	1/1:10,442:0.98:452
chr1	156536480	rs947664	T	C	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	156539154	rs6427319	T	C	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	156539320	rs34005985	C	CTT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=6.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=-0.521;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr1	156551848	rs6682716	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	156553762	rs11264502	A	C	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	156554516	.	T	C	775.77	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	156556321	rs10796961	G	A	17294.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,674:1.00:674
chr1	156561414	rs6698493	T	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	156561557	rs149629319	G	GGGGCCGGGCC	1747.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	156561651	rs7516274	G	C	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	156562008	rs1925949	G	A	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	156562143	rs942959	G	A	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	156563375	rs6427321	G	A	8836.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	156563726	rs6427322	A	C	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	156563813	rs6668178	G	A	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	156563852	rs942963	C	T	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	156563898	rs1270	T	C	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	156564640	rs3795732	G	A	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	156564922	rs3795733	C	T	13976.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr1	156565049	rs72559129	A	AAC	29905.73	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr1	156567496	rs879461	C	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	156594347	rs116317850	C	T	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	156594656	rs12567958	C	A	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	156617968	rs2277873	G	A	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.64;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	156618768	rs4661209	T	G	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	156622252	rs1056695	G	A	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	156626358	rs6700323	C	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	156626920	rs7524611	T	C	20815.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:0,834:1.00:834
chr1	156639753	rs11582300	G	A	36784.77	.	AC=2;AF=1.00;AN=2;DB;DP=1418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,1407:1.00:1407
chr1	156640156	rs3748570	G	A	30226.77	.	AC=2;AF=1.00;AN=2;DB;DP=1207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,1172:1.00:1172
chr1	156640678	rs2886443	G	A	15646.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:1,603:1.00:604
chr1	156646668	rs4278369	A	G	6991.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	156670545	rs4661213	C	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	156675066	rs114828892	G	C	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	156705593	rs4311877	G	C	15415.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,590:1.00:590
chr1	156706559	rs8658	A	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	156707775	rs6670122	T	G	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	156713512	rs4437869	C	T	4040.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.271;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.151;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.74;ReadPosRankSum=-0.790;SOR=0.347;set=HC	GT:AD:AF:DP	1/1:1,156:0.99:157
chr1	156752048	rs2274503	C	G	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	156760887	rs11264554	C	A	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	156784982	rs926103	T	C	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	156785617	rs1800601	G	A	9655.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	156785762	rs11325907	AG	A	17745.73	.	AC=2;AF=1.00;AN=2;DB;DP=417;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	156785771	rs7546838	A	G	17578.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.50;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr1	156785779	rs1800600	G	A	16143.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	156814027	rs56252149	G	A	9986.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr1	156814478	rs41267423	G	A	10632.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr1	156818647	rs11590051	T	C	11866.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.060;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr1	156845492	rs144271100	A	AGT,AGTGT	3413.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=405;set=Intersection	GT:AF:DP	1/2:0.23,0.61:215
chr1	156848995	rs6337	C	T	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	156875092	rs4661074	G	A	6656.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.91;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	156875097	rs4661075	G	A	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.79;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	156875107	rs2644590	C	A	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.31;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	156875377	rs2644591	G	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	156875985	rs2644593	G	A	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	156877457	rs1952294	T	C	17246.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr1	156883546	rs12137505	A	G	7437.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	156884365	rs749256	T	C	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	156884438	.	G	C	16731.77	.	AC=2;AF=1.00;AN=2;DP=663;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,644:1.00:644
chr1	156890854	rs41273223	C	G	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	156894006	rs822438	C	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	156902259	rs822430	G	A	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	156907081	rs945508	T	C	6105.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	156907115	rs868188	T	C	5992.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	156914240	rs5778015	CCATT	C	2126.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	156939175	rs1336149	C	T	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	157062364	rs1176536	G	A	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	157062696	rs1176537	G	T	7061.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	157069154	rs16838075	A	G	5555.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	157485275	rs3811036	T	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	157485429	rs60516051	C	G	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	157485504	rs115493285	G	A	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	157485720	rs1002967	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	157497263	rs3761961	T	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	157508882	rs6427384	C	T	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	157509025	rs2012199	C	T	11677.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.89;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	157514091	rs12036228	C	T	9874.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	157514097	rs6679793	A	G	9908.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	157517127	rs7531685	C	T	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	157522016	rs7552348	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	157548669	rs1885561	T	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	157557957	rs11799853	T	C	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	157566019	rs10489674	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	157566211	rs12744410	A	G	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:1,263:1.00:264
chr1	157567751	rs1361889	A	G	8390.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	157650689	.	G	A	993.77	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	157651017	rs1806798	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.29;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	157652929	rs141977401	TA	T	3078.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.742;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.299;QD=18.77;ReadPosRankSum=1.801;SOR=1.409;set=HC	GT:AD:AF:DP	1/1:6,158:0.96:164
chr1	157668390	rs7522061	T	C	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	157669580	rs58517866	T	A	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	157670290	rs945635	C	G	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	157718231	rs143605468	CAAATAAAT	CAAAT,C	2708.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=70;set=Intersection	GT:AF:DP	1/1:1.00:61
chr1	157718283	rs6696643	A	T	7591.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=43.38;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	157718325	rs3818813	T	G	12501.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.43;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr1	157718430	rs2275232	T	G	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	157718645	rs2275233	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	157718780	rs3818814	A	G	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	157718835	rs6662117	G	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	157737504	rs2873413	G	A	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	157740186	rs10540465	GTC	G	9325.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.97;QD=44.20;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	157740189	rs57139984	A	G	9334.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=69.00;QD=43.83;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	157802979	rs2261295	C	T	6273.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	157806006	rs2765503	G	A	9881.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	157811392	rs2260040	G	A	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	158057691	rs3820676	A	C	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	158058266	.	C	CT	126.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=1.071;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	158153996	rs426336	T	C	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	158224575	rs72153350	CTGTGTGTGTG	CTG,C	2000.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=358;set=Intersection	GT:AF:DP	0/1:0.58:174
chr1	158260878	rs375739413	CT	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.143;QD=0.31;ReadPosRankSum=2.131;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:233,63:0.21:296
chr1	158297864	rs11583390	C	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	158389208	rs34276698	G	GA	1019.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	158389659	rs58605957	T	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	158389693	rs77441663	C	T	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	158390252	rs12239443	T	G	8054.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	158390501	rs34616883	G	A	15770.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr1	158435278	rs1573519	G	A	5352.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	158435928	rs41273489	G	A	16699.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr1	158436299	rs4657080	T	C	4829.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	158436354	rs67123344	AT	A	615.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	158450192	rs61741711	C	T	11565.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr1	158450314	rs6679056	A	G	13657.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr1	158507157	rs2051665	A	T	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.19;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	158507160	rs2051666	T	G	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	158507222	rs5778082	GA	G	5546.73	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	158507360	rs77684327	G	C	4591.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	158507398	rs2051067	G	T	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	158549421	rs77690058	G	A	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	158580887	rs3768535	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	158580921	.	G	GCACACA,GCACACACA	1550.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.157;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=36.92;ReadPosRankSum=1.810;SOR=1.483;set=HC	GT:AD:AF:DP	1/2:4,12,26:0.29,0.62:42
chr1	158582646	rs2251969	T	C	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	158584091	rs952094	A	G	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=39.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	158584103	rs57778257	G	GA	1786.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.329;MLEAC=2;MLEAF=1.000;MQ=59.80;MQRankSum=-0.176;QD=30.81;ReadPosRankSum=-0.802;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:3,55:0.95:58
chr1	158587390	rs857716	C	T	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	158587784	rs857717	T	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	158587858	rs28525570	G	A	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	158588916	rs7553252	C	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	158592935	rs3753068	G	A	7108.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	158595824	rs56954229	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	158595842	rs11265038	C	A	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	158596524	rs12088990	A	G	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	158597507	rs3737515	G	C	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	158606449	rs3738791	G	T	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	158607788	rs2518492	T	G	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	158609300	rs17635857	C	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	158612236	rs863931	A	G	7629.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:3,310:0.99:313
chr1	158614198	rs6702040	C	T	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr1	158618223	rs857677	C	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	158618480	rs11265044	A	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	158619728	rs2482965	A	C	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	158639601	rs2298801	A	G	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	158644105	rs703116	T	A	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	158647495	rs325996	A	T	9911.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr1	158647631	rs325995	T	A	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	158654786	rs385096	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	158655036	rs435080	G	A	8183.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	158655162	rs2564859	C	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr1	158656281	rs2564858	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	158656347	rs111674514	C	CAGAG	2227.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.81;ReadPosRankSum=-0.015;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:10,54:0.84:64
chr1	158724537	rs34126693	T	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	158735595	rs857824	C	T	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	158735691	rs857825	T	C	8591.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	158735740	rs857826	A	G	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	158735892	rs857827	A	G	7114.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	158736215	rs6666753	G	A	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	158906555	rs1633280	A	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	158913525	rs856082	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	158943295	rs144676333	T	TCA	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	158986477	rs866484	G	C	11769.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,466:1.00:466
chr1	158987941	rs856046	A	G	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr1	159002222	rs861318	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	159002301	rs2518553	T	C	5761.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	159002377	rs1057027	C	A	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr1	159002389	rs1057028	T	A	10376.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	159169641	rs862999	T	C	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	159174824	rs863001	G	C	22178.77	.	AC=2;AF=1.00;AN=2;DB;DP=865;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,859:1.00:859
chr1	159174885	rs7550207	T	C	13150.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,518:1.00:518
chr1	159175004	rs17838198	CT	C	552.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	159175354	rs12075	G	A	17897.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:1,678:1.00:679
chr1	159402165	.	A	T	25072.77	.	AC=2;AF=1.00;AN=2;DP=986;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,960:1.00:960
chr1	159402584	rs11419544	G	GT	3199.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	159409196	rs6691297	T	C	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	159409533	rs10908721	G	A	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	159409734	rs10908722	G	T	20279.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	1/1:1,786:1.00:787
chr1	159505101	rs35393723	G	A	5690.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	159558258	rs2808661	A	G	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	159684047	.	C	CCA	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=0.182;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	159778699	rs12042065	G	A	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.623;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	159785284	rs4411129	C	G	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	159799599	rs11422063	C	CA	4788.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	159804940	rs75609405	G	A	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	159824967	rs2501340	G	C	14840.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,575:1.00:575
chr1	159825061	rs2501339	G	C	11578.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr1	159826561	rs111861505	C	CCA	760.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.586;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.462;QD=27.17;ReadPosRankSum=-1.416;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:3,25:0.89:28
chr1	159827416	rs4477268	C	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	159827456	rs2494503	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	159827475	rs11584200	G	A	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	159828128	rs2494504	A	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	159828746	rs2501337	G	A	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	159832425	rs2494507	G	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	159842088	rs2494518	T	A	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	159842103	rs11265289	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	159842691	rs4460634	C	G	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	159854392	rs2501325	C	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	159860259	rs2501320	G	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	159890459	rs11265297	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	159897126	rs13052	C	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	159897388	rs1934074	C	T	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	159897681	rs142211405	TAA	T	2025.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.295;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.450;QD=20.46;ReadPosRankSum=-0.250;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:14,85:0.86:99
chr1	159898100	rs3747615	A	G	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	159898913	rs7543462	A	G	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	159902526	rs3827531	T	C	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	159906156	rs10908750	A	G	13453.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr1	159906849	rs10797055	A	G	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	159907362	rs7524321	A	G	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	159907367	rs7526647	T	C	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=1.761;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	159922369	rs2840583	C	T	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	159923111	rs2789417	T	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	160090674	rs2854246	T	C	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	160090681	rs67915591	CCCTT	C	6591.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	160093222	rs2820581	C	T	14702.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr1	160093911	rs2820582	T	C	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	160095127	rs7548116	T	A	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	160097666	rs6695366	G	A	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	160098927	rs5778151	A	AG	1337.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	160121746	rs746362	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	160122826	rs11265335	G	A	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	160128994	rs10908764	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	160134205	rs11265338	C	T	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	160136350	rs7529215	G	A	8436.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	160137300	rs4656889	A	C	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	160141196	rs625549	C	T	8586.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr1	160163446	rs3747621	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	160163509	rs3747623	C	T	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	160164668	rs1186693	T	C	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	160165442	rs35846599	G	GC	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-1.181;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr1	160168368	rs822450	G	A	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	160169473	rs959166	T	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	160178356	rs667306	A	G	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	160232929	rs61480108	AT	A	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.871;QD=0.71;ReadPosRankSum=1.181;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:108,34:0.24:142
chr1	160275434	rs2066320	A	G	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	160393905	rs12086448	A	G	12636.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.561;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.11;ReadPosRankSum=-1.418;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:1,483:1.00:484
chr1	160394173	rs12087593	A	G	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	160394937	rs17380127	A	C	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	160395003	rs17380141	G	A	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	160458782	rs3795327	A	G	9506.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr1	160519812	rs3832278	C	CA	4308.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	160519815	rs58960001	C	CT	4309.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	160582200	rs200238058	T	TA	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=2.244;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:37,20:0.35:57
chr1	160585554	rs149160	C	G	8254.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	160650913	rs4656926	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	160650938	rs6667145	C	T	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	160717872	rs527733	T	G	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	160722064	rs527342	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	160766179	.	C	CT	58	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=10;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=58;QD=25.0;SC=CTGGGAGATTCTTTTTTTTGT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=3;WE=160766187;WS=160766169;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr1	160771761	rs1556517	C	A	13673.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,517:1.00:517
chr1	160788131	rs3817407	T	C	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	160789196	rs537540	A	C	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	160793442	rs474131	A	G	13974.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr1	160793560	rs509749	A	G	9223.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	160793962	rs506081	G	C	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	160797323	rs577453	T	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	160797514	rs576334	C	G	8237.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr1	160797684	rs574610	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	160803802	rs11265493	A	G	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr1	160809003	rs6682654	G	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	160849030	rs3766358	T	A	1295.74	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:5,52:0.91:57
chr1	160849060	rs3766359	G	A	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	160849082	rs3820094	A	G	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	160849367	rs2274905	G	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	160850280	rs4656957	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	160850936	rs2236515	T	C	30599.77	.	AC=2;AF=1.00;AN=2;DB;DP=1200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.65;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,1193:1.00:1193
chr1	160851594	rs56380748	GAAAAAAA	G	1692.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.636;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.201;QD=27.75;ReadPosRankSum=-1.273;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:2,59:0.97:61
chr1	160851619	rs10908808	A	G	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	160851826	rs2274907	A	T	6594.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	160851894	rs2274908	G	A	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	160852022	rs2274909	C	T	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	160852046	rs2274910	T	C	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	160854526	rs2297559	G	A	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	160917902	rs1556519	T	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	160920809	rs3829790	A	G	24421.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.94;QD=44.57;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,548:1.00:548
chr1	160920813	rs790059	A	G	24541.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.93;QD=44.46;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,552:1.00:552
chr1	160920966	rs6680969	C	T	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	160921230	rs4656971	T	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	161010774	rs2516841	A	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	161010791	rs2073657	C	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	161011716	rs2774276	G	C	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	161013121	rs2516839	C	T	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr1	161017556	rs2774279	C	T	10319.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	161019040	rs3813609	G	C	22117.77	.	AC=2;AF=1.00;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	1/1:0,849:1.00:849
chr1	161022380	rs4396136	G	A	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.98;SOR=1.289;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	161022639	rs3813610	C	G	190.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	161023252	rs377178223	TTCTCTC	T	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.64;ReadPosRankSum=0.366;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	161043735	rs4656285	A	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	161043764	rs4656978	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	161047125	rs60601836	CTATA	C	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	161049358	rs3820097	G	A	13385.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr1	161068836	rs11576830	A	C	34229.77	.	AC=2;AF=1.00;AN=2;DB;DP=1346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,1333:1.00:1333
chr1	161089450	rs111473243	C	CTAAACT	3443.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	161126975	rs12031437	C	G	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	161136843	rs2301287	C	G	9634.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	161143969	rs11265561	A	G	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	161160872	rs34884997	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	161160988	.	C	A	3364.77	.	AC=1;AF=0.500;AN=2;DP=310;set=Intersection	GT:AD:AF:DP	0/1:136,166:0.55:302
chr1	161162173	rs7512012	G	A	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	161163037	rs4233367	T	C	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	161163633	rs3813622	C	T	15454.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr1	161166723	rs35630547	G	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	161167698	rs4589131	T	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	161176137	rs4656993	A	G	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	161179877	rs4656994	G	A	5935.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	161183516	rs1136207	C	T	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	161184059	rs10629771	C	CTGTG,CTGTGTG	1470.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=76;set=Intersection	GT:AF:DP	1/2:0.30,0.70:33
chr1	161191450	.	CTTTTTTT	C	2253.73	.	AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.74;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	161191461	.	T	C	106.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-1.293;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr1	161191462	.	T	C	199.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=8.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.685;SOR=2.144;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr1	161191522	rs685	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	161192845	.	CCACACACACACACA	C,CCA	8132.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=440;set=Intersection	GT:AF:DP	1/2:0.22,0.77:312
chr1	161196166	rs3813628	A	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	161200487	rs4073054	C	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	161200586	rs2307418	T	G	10823.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,429:1.00:429
chr1	161201350	rs11265567	G	T	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	161201350	.	GCG	TCA	742	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=27;MQ=60.0;NF=8;NR=13;PP=742;QD=37.8794226125;SC=GAGTGCAGTGGCGTGATCTCT;SbPval=0.58;Source=Platypus;TC=21;TCF=8;TCR=13;TR=21;WE=161201360;WS=161201340;set=Platypus	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	161201352	rs11265568	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	161202605	rs2307424	G	A	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	161205046	.	GTTTTTTT	G	349.06	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.59;QD=38.78;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	161205055	.	T	TAC	349.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=56.59;MQRankSum=-0.126;QD=34.91;ReadPosRankSum=1.645;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr1	161208254	.	AAG	A	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=1.456;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:94,16:0.15:110
chr1	161208926	rs137884673	A	AT	310.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.612;QD=15.54;ReadPosRankSum=0.551;SOR=0.180;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr1	161208928	rs28689882	A	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=39.17;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	161228800	rs4078110	C	T	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	161253657	rs4255401	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	161254280	rs4477295	G	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	161276434	rs6674383	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	161326722	rs199612101	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.690;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr1	161332091	rs34744926	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.179;QD=2.77;ReadPosRankSum=0.505;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	161479745	rs1801274	A	G	13995.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr1	161495477	rs72633678	A	T	12897.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:1,493:1.00:494
chr1	161495885	rs404508	T	C	14799.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:1,582:1.00:583
chr1	161513038	rs373678887	G	C	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	161518159	rs200225944	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=6.015;MLEAC=1;MLEAF=0.500;MQ=44.83;MQRankSum=0.945;QD=4.66;ReadPosRankSum=-1.601;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr1	161518172	rs147342954	C	T	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.997;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=6.216;MLEAC=1;MLEAF=0.500;MQ=45.84;MQRankSum=-0.516;QD=15.64;ReadPosRankSum=2.180;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:41,71:0.63:112
chr1	161518214	rs148181339	T	C	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:212,102:0.32:314
chr1	161518336	rs77144485	C	T	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	0/1:690,201:0.23:891
chr1	161559327	rs3933769	A	G	9478.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	161561236	rs143998157	C	T	6734.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.84;QD=26.00;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	161561287	rs151302833	A	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	161562058	rs143311449	G	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	161565324	rs61801822	C	T	7144.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.42;MQRankSum=-1.127;QD=26.86;ReadPosRankSum=-0.914;SOR=0.433;set=HC	GT:AD:AF:DP	1/1:1,265:1.00:266
chr1	161569419	rs430178	C	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.41;QD=27.82;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	161576227	rs145679054	C	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.29;QD=26.30;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	161577669	rs61802307	G	A	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr1	161594226	rs61803008	C	T	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.59;QD=26.46;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	161594246	rs61803009	G	T	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.74;QD=26.29;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	161594525	rs61803010	GT	CG	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	161596283	rs418215	G	A	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	161600995	rs34085961	C	T	8811.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr1	161601118	rs61803026	G	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	161601133	rs61803027	T	C	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	161643044	rs74870676	A	G	1795.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.297;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.28;MQRankSum=-1.791;QD=26.03;ReadPosRankSum=1.397;SOR=0.273;set=HC	GT:AD:AF:DP	1/1:1,68:0.99:69
chr1	161645259	rs1674759	T	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	161681661	rs1105238	C	G	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	161681780	rs2275603	A	G	8174.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	161695639	rs7520519	G	T	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	161697072	rs72704099	G	C	8763.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr1	161721351	rs7540096	A	G	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	161721707	rs1063178	C	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	161722779	rs35439833	C	CAAA	1590.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr1	161736035	rs2298019	A	G	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	161822959	rs2340717	C	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	161976234	rs12022536	A	G	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	161976272	rs34863451	G	GA	2632.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.892;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.428;QD=16.35;ReadPosRankSum=-0.122;SOR=0.539;set=HC	GT:AD:AF:DP	1/1:21,140:0.87:161
chr1	162313597	rs347278	T	C	14141.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,545:1.00:545
chr1	162335424	rs1964052	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	162344390	rs164159	A	G	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chr1	162345091	rs164181	G	A	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	162345294	rs3737312	G	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	162348662	rs164188	C	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	162351586	rs901662	G	A	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	162352941	rs11806859	G	A	7213.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	162367235	rs164124	G	A	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	162381833	rs12745630	C	G	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	162467014	rs10919549	C	G	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	162470961	rs5778280	A	AT	209.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	162473401	rs33964112	CAA	C	235.79	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr1	162560360	.	TTC	T	401.73	.	AC=1;AF=0.500;AN=2;DP=191;set=Intersection	GT:AD:AF:DP	0/1:118,30:0.20:148
chr1	162722846	rs1632311	C	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	162725655	rs1115570	A	C	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	162740327	rs1780003	T	C	12835.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:1,504:1.00:505
chr1	162742180	rs1704762	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	162743418	rs1355287	G	T	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	162748588	rs907074	C	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	162754049	rs11338	G	A	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	162754244	rs61812969	T	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.92;QD=31.44;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	162760551	rs1704754	C	T	5864.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.51;QD=46.18;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	162760554	rs71519246	T	C	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.10;QD=41.90;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	162765475	rs2684884	G	C	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.73;QD=25.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	162766476	rs1780019	C	T	8268.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=26.08;SOR=1.084;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	162774236	rs77482353	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	162775267	rs12563263	C	T	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	162787243	rs2803865	T	A	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.98;QD=28.52;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	162822771	rs2684878	A	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	162824553	rs78851184	G	A	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	162825457	rs77227460	C	A	7153.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.236;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=3.072;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=-0.582;SOR=0.280;set=HC	GT:AD:AF:DP	1/1:1,283:1.00:284
chr1	163142537	rs10917691	G	A	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	163187263	rs2814368	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	163298768	rs5778324	T	TA	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.283;QD=5.03;ReadPosRankSum=2.002;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr1	163307944	rs2175015	T	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	163309219	rs1509022	A	T	6521.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	163309302	rs2999852	C	T	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	163315350	rs10753611	G	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	164529120	rs2275558	G	A	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	164559536	rs1780335	A	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	164789444	rs1538488	A	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	165173216	rs1354509	A	G	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	165175374	rs4656435	G	A	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	165180089	rs1532815	T	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	165218679	rs9970062	C	T	15656.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr1	165375895	rs283697	A	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	165376043	rs283696	T	C	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	165376227	rs111545739	C	CCG	2527.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	165376231	.	CTG	C	2482.73	.	AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	165377389	rs283692	T	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	165378729	rs66800417	TACACAC	TAC,T	4968.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=150;set=Intersection	GT:AF:DP	1/1:1.00:120
chr1	165386567	rs2281986	C	T	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	165406187	rs79627842	T	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	165406243	rs77182452	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	165406313	rs77875554	T	G	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	165513439	rs285446	A	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	165513456	rs285445	A	T	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	165513463	rs285444	C	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	165533005	rs453717	C	A	11140.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr1	165533188	rs367199	A	C	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	165601466	rs9333378	G	A	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	165621129	rs58194137	C	CAAAAAAAAA	315.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=63.15;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	165621322	rs77176546	TATTATC	T	4417.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr1	165624799	rs8133	G	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	165630475	rs7544840	C	T	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	165630495	rs7511691	T	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	165630698	rs6667681	A	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	165634425	rs3820362	C	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	165636749	rs2176151	A	G	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	165648559	rs4646897	T	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	165648886	rs4646896	G	A	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.77;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	165648894	rs4646895	C	G	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.93;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	165651153	rs2882006	T	A	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	165651502	rs1913844	G	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	165652273	rs1143659	A	G	7633.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	165652445	rs4233407	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	165721223	rs7512095	T	C	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	165737704	rs2790053	C	G	13192.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr1	165859630	rs477033	C	G	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	166124134	rs896402	A	G	9403.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	166591043	rs530513	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	166838866	rs71253526	A	AATTTT	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	166905927	rs33958744	C	T	18250.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,706:1.00:706
chr1	167082869	rs12122365	G	A	7772.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	167088473	rs1410244	C	A	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr1	167095163	rs267745	G	C	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	167095765	rs6668826	G	A	8279.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	167095881	rs3795605	G	A	6868.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	167097739	rs2281959	C	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	167382399	rs72086535	AGT	A	203.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,14:0.21:68
chr1	167385324	.	TAA	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.954;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr1	167403504	rs952962	A	G	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	167404078	rs3108156	G	A	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	167408670	rs840016	C	T	7089.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	167523029	rs12025624	C	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	167778843	rs3213588	G	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	167787265	rs12060498	C	T	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	167793670	rs1476074	C	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	167806647	rs1034463	T	A	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	167806696	rs1034464	T	C	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	167817639	rs203795	A	G	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	167823512	rs3738236	T	C	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	167825485	rs2071921	T	C	6085.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	167825606	rs2071922	A	G	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	167830006	rs7518237	G	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	167839578	rs67878347	G	A	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	167844553	rs203826	C	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	167844582	rs203827	C	G	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	167849318	rs203847	A	G	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	167849414	rs203849	A	G	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	167889094	rs17556487	T	A	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	167893759	rs9618	G	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	167906239	rs203788	A	C	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	167971979	rs436256	G	T	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	167971980	rs428694	C	G	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	167973976	rs1060041	C	T	13523.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.28;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,535:1.00:535
chr1	167985326	rs3831959	TG	T	132.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	167988653	rs202255	A	G	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	167992344	rs201541	T	A	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	168035104	rs380095	G	C	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	168056724	rs275143	A	G	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	168059866	rs275149	A	G	9970.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr1	168073601	rs2294817	C	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	168074145	rs6427119	G	A	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	168105581	rs200664972	A	AG	34512.73	.	AC=2;AF=1.00;AN=2;DB;DP=1156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=32.22;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,1071:1.00:1071
chr1	168106716	rs6664903	T	C	7220.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	168200733	rs11588504	T	C	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:5,127:0.96:132
chr1	168206118	rs55947108	GTTTAA	G	3073.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	168208308	rs12142742	T	C	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	168262289	rs7543224	A	G	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.91;SOR=1.241;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	168262299	rs7520743	C	T	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.03;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	168262522	rs57039241	A	AGT	743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.749;QD=14.58;ReadPosRankSum=1.182;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:17,34:0.67:51
chr1	168274201	rs4656579	G	A	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	168278264	rs1883148	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	168282261	rs3885717	T	A	7728.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	168545949	rs34933908	G	A	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.38;QD=25.29;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	168546011	rs371404303	A	G	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.17;QD=43.69;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	168546016	rs138163442	A	T	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.83;QD=45.42;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	168549422	rs6427130	C	T	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=25.08;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	168550535	rs79981832	A	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	168665747	rs78760104	C	CT	16695.73	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=39.75;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr1	168665974	rs524705	T	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	168698173	rs1052591	C	T	10657.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr1	169094100	rs968304	T	A	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	169099037	rs10919070	A	C	351.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	169099061	rs1200157	G	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	169101269	rs199593766	T	TG	1535.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.251;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-1.499;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:10,103:0.91:113
chr1	169101273	rs1779796	T	G	5616.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.70;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	169159866	rs7526721	G	T	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	169160036	.	CTTTTTTTTTT	C	189.84	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	169216412	rs2040445	C	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	169272299	rs10919130	A	T	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	169272451	rs10800427	A	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	169272453	rs10800428	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	169279196	rs34054662	T	TA	561.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	169293721	rs1140523	G	A	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	169345704	rs12563090	G	A	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	169349608	rs3830533	C	CTA	82.25	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	169351596	rs3905328	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	169391154	rs3820059	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	169394226	rs10919168	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	169435027	rs2678166	C	T	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	169484552	rs3820060	T	G	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	169492676	rs9332643	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	169494196	rs2301515	C	T	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	169498834	rs6009	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	169498975	rs6030	T	C	8142.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	169499190	rs2157581	A	G	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	169499951	rs9332620	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	169510380	rs9287090	G	A	12030.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:3,475:0.99:478
chr1	169510524	rs1800594	A	G	10800.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:1,419:1.00:420
chr1	169511555	rs6032	T	C	10399.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr1	169511734	rs4525	T	C	20572.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr1	169511755	rs4524	T	C	19968.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr1	169512027	rs6021	T	C	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	169512093	rs6017	A	G	12851.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr1	169512120	rs6016	G	A	12896.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr1	169513436	rs9287092	C	A	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	169515874	rs13306345	T	A	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	169515916	rs13306344	G	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	169519049	rs6025	T	C	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	169572545	rs60786797	C	CTGTG	304.75	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	169599254	rs732314	T	C	9278.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	169672595	rs202128116	GA	G	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.442;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr1	169698825	rs1534904	T	G	6331.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	169698921	rs2076059	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	169699819	rs3917419	G	A	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	169702617	.	G	A	4616.77	.	AC=2;AF=1.00;AN=2;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr1	169762807	rs10489177	T	G	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	169768033	rs6680938	T	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	169768080	rs6668114	C	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	169795214	rs57068023	CT	C	643.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	169795276	rs6682137	A	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	169797127	rs6427223	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	169819526	.	A	AT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.57;ReadPosRankSum=2.623;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr1	169819605	rs6664099	A	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	169823296	rs112604424	G	GCTTGA	722.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	169823718	rs4656197	T	C	7712.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	169831993	rs7525259	A	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	169839595	rs10919260	A	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	169847683	rs6683056	G	A	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	169890933	rs518928	A	G	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	169891056	rs3838393	CT	C	200.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	169941761	rs511443	A	T	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	169947146	rs11396984	C	CA	562.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:3,31:0.91:34
chr1	169951748	rs638486	A	G	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	169952385	rs2057249	G	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	169952655	rs140616353	T	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	170001151	rs11277624	ATACTCATT	A	1557.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	170004508	rs12750962	A	T	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	170115156	rs550297	G	A	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	170501385	rs7531125	A	C	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	170502517	rs1412892	A	G	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	170521376	rs913257	G	A	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	170633186	rs11286665	AT	A	649.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.20;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	170633229	.	C	CCTCTCTCTCT,CCTCTCTCTCTCT	1520.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.66;QD=41.10;SOR=1.418;set=HC	GT:AD:AF:DP	1/2:0,17,20:0.46,0.54:37
chr1	170927570	rs374865486	CT	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=4.170;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.89;ReadPosRankSum=2.308;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:97,31:0.24:128
chr1	170993444	.	G	GGTGT	248.74	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	171155103	rs6657314	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	171168584	rs2020862	CA	TG	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	171174531	rs2020863	A	G	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr1	171491264	rs3736679	T	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	171496875	rs139849492	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	171496895	rs10753126	A	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	171509327	rs760644	G	A	8269.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	171511039	rs1687064	C	G	9158.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	171511442	rs2272810	A	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	171514731	rs235468	C	G	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	171514848	rs144272003	T	TTTTA	374.74	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.47;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	171519487	rs235470	A	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	171526570	rs1687057	G	A	43119.77	.	AC=2;AF=1.00;AN=2;DB;DP=1671;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.694;set=HC	GT:AD:AF:DP	1/1:0,1651:1.00:1651
chr1	171527322	rs235482	A	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	171546833	rs6685179	C	A	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	171548868	rs235489	T	C	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	171556165	rs235501	G	C	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	171558516	rs235503	C	T	6436.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr1	171607702	rs2032555	C	T	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	171621525	rs2234926	C	T	13827.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr1	172001666	.	CTT	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.565;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=7.92;ReadPosRankSum=1.957;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	172222629	rs374567538	TCTCTC	T	1715.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	172277845	rs200321314	AT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.710;QD=0.65;ReadPosRankSum=2.810;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr1	172292355	rs79240969	C	CTCA	767.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=45.16;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	172356437	rs6688654	A	G	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	172376809	rs9425600	T	C	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	172399346	rs200979934	TAA	T	8350.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	172411496	rs2230471	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	172411768	rs13932	T	C	7841.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	172417781	rs2157451	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	172422209	rs2285175	C	T	6095.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	172431210	rs4916261	G	A	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	172434309	rs9425328	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	172434375	rs2901655	G	A	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	172437592	rs1129942	G	A	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	172577864	rs372623434	CT	C	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.115;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr1	172634734	rs2639653	T	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	173490407	rs5778771	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.789;QD=0.84;ReadPosRankSum=1.156;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr1	173490547	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=0.906;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:116,21:0.15:137
chr1	173490616	.	C	CTATATA	130.73	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=65.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	173516907	rs140112573	T	C	7714.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	173552783	rs12032386	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	173556699	rs301698	G	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	173606207	rs12067170	T	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	173615965	rs7539322	C	T	12169.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr1	173626609	.	G	GA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.448;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr1	173636845	rs200555170	TA	T	3203.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=4.264;MLEAC=2;MLEAF=1.000;MQ=60.94;MQRankSum=1.182;QD=16.69;ReadPosRankSum=-0.945;SOR=0.280;set=HC	GT:AD:AF:DP	1/1:12,180:0.94:192
chr1	173794587	.	C	CATTATTATTATTATT	229.82	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.80;QD=38.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	173795803	.	CT	C	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=4.943;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.758;QD=0.90;ReadPosRankSum=1.788;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:129,40:0.24:169
chr1	173814258	rs77124001	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	173819421	rs201467171	C	CA	105.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=0.975;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	173819743	rs66665709	C	CT	196.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-0.759;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	173834605	rs2235095	G	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	173834632	rs6790	G	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	173842467	rs9286895	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	173855298	rs1322775	A	T	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	173876705	rs2759328	C	T	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	173878832	rs5878	T	C	18445.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,712:1.00:712
chr1	173878862	rs5877	T	C	14366.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr1	173886216	rs2227589	C	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	173947571	rs78576697	T	C	7372.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	173952539	rs6686083	T	A	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	173961837	rs6425268	C	G	1714.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.822;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.09;ReadPosRankSum=1.891;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:7,50:0.88:57
chr1	174221887	rs11351373	GT	G	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.30;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	174417231	rs7516240	G	A	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	174926802	.	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=3.582;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=-0.401;QD=0.94;ReadPosRankSum=-1.793;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr1	174927388	rs10798329	G	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	174959108	rs41266060	G	A	18906.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:0,747:1.00:747
chr1	174969271	rs1046439	C	T	10136.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr1	174984073	rs201408977	TC	T	296.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.969;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr1	175046488	rs2072033	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	175046789	rs2072032	A	G	19541.77	.	AC=2;AF=1.00;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	1/1:0,753:1.00:753
chr1	175046826	rs41266078	G	A	20542.77	.	AC=2;AF=1.00;AN=2;DB;DP=797;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,788:1.00:788
chr1	175052828	rs2072031	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	175053101	rs2072030	A	T	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	175054548	rs1573758	C	T	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr1	175086461	rs6690229	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	175087606	rs10912888	T	C	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	175087677	rs6656284	G	A	10999.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	175087683	rs149150350	A	AT	7945.73	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:39,396:0.91:435
chr1	175087729	rs6696455	T	C	12700.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr1	175092674	rs2285215	C	T	5447.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	175092840	rs2072041	T	C	7761.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	175096333	rs2072040	A	G	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	175097349	rs7547567	C	T	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	175104790	rs4651323	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	175104796	rs4651324	G	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.03;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	175105880	rs2072037	G	A	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	175105942	rs4650703	G	A	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	175113578	rs10912897	T	C	5879.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	175116046	.	CT	C	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=3.386;QD=1.62;ReadPosRankSum=-1.029;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:80,40:0.33:120
chr1	175129924	.	C	CCTT	1629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.585;QD=33.95;ReadPosRankSum=2.282;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:6,42:0.88:48
chr1	175293424	rs2213635	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	175299301	rs2027867	T	C	8525.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	175324518	rs55715761	GCA	G	3517.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	175324521	rs55973835	A	T	3526.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	175324651	rs2228359	A	G	8814.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr1	175335234	rs1385541	C	T	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	175335412	rs1385540	A	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	175336292	rs1872440	C	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	175336305	rs1872439	G	C	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	175336530	rs6697701	T	C	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	175336619	rs6697801	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	175916267	rs6674353	T	C	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	175916363	.	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.506;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:169,39:0.19:208
chr1	175916506	rs34893141	A	AT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.178;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	175937540	rs4534339	C	T	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	175951347	rs10798430	T	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	176012466	.	G	GA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=3.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-1.815;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:109,23:0.17:132
chr1	176012807	rs4233165	G	A	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	176050430	rs56720201	GA	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=4.355;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=4.500;QD=0.65;ReadPosRankSum=-0.674;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr1	176102974	rs2481662	T	C	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	176103954	rs2502845	C	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	176129276	rs520661	G	A	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	176153658	rs791744	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	176671912	rs371785478	TGA	T	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.328;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:28,29:0.51:57
chr1	176681165	rs66731142	ATG	A	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-1.191;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr1	176734756	rs3737759	C	T	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	176759202	rs2076335	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	176762955	rs78673484	T	G	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	176845528	rs2076341	C	T	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	176857347	rs2072935	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	176863836	rs2281180	G	C	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	176863867	rs2228956	T	C	6263.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr1	176905200	rs2076071	A	G	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	176915022	rs2076070	A	G	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	176918504	rs2076073	A	G	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	176934389	rs12565733	T	A	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	177250670	rs1045736	G	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	177898799	rs623479	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	177901741	rs684227	A	G	14898.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,591:1.00:591
chr1	177908852	rs943762	C	T	9156.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,359:1.00:359
chr1	177913980	rs532842	T	C	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	177915474	rs842192	A	C	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr1	177929554	rs10913472	C	T	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr1	177929987	rs12040910	T	C	8500.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr1	177930096	rs867275	T	C	10146.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr1	177930894	rs945641	C	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	177935275	rs1415085	A	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	178483231	rs10913563	G	A	8885.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=-1.261;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:2,350:0.99:352
chr1	178484834	rs10798611	A	G	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	178489978	rs3813636	T	G	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	178492447	rs7527160	T	A	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	178514622	rs12568310	C	T	9596.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr1	178646748	rs2811318	A	T	100.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	178646752	rs2773075	A	C	100.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	178646815	rs12748987	C	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	178745798	rs11323887	CT	C	1006.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=1.777;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:28,86:0.75:114
chr1	178746031	rs75184054	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	178780650	rs12131426	A	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	178820159	rs1544124	C	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	178854162	rs6425503	C	T	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	178858711	rs10798635	C	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	178858759	rs3753534	G	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	178866674	rs17674780	A	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	179051236	.	C	A	541.77	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	179292442	rs2902277	G	A	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	179304892	rs1034269	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	179308803	rs3753524	G	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.57;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	179310439	rs7547733	C	T	10385.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr1	179312102	rs4651024	T	C	11460.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr1	179312249	rs11350945	AT	A	508.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	179317895	rs200924427	ATGTGTGTGTGTGTGTGTGTGTGTGTG	A,ATG	938.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;QD=39.11;SOR=1.051;set=HC	GT:AD:AF:DP	1/2:0,8,16:0.33,0.67:24
chr1	179319541	rs3753526	C	G	18323.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,717:1.00:717
chr1	179319580	rs3753527	T	C	10324.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr1	179320578	rs13306731	A	G	11843.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr1	179335499	rs35129223	C	CT	455.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=8.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-1.026;SOR=1.792;set=HC	GT:AD:AF:DP	1/1:6,29:0.83:35
chr1	179339334	rs6666358	G	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	179347832	rs10798674	T	C	10065.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr1	179351606	rs4625243	G	C	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	179354304	rs7541905	A	G	261.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	179364391	rs61173288	A	G	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	179380472	rs5779024	GT	G	791.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.84;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	179401564	rs10706073	CT	C	3428.73	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:41,227:0.85:268
chr1	179402037	rs199738366	C	CA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.867;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:72,16:0.18:88
chr1	179437827	rs7514278	G	A	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	179452194	rs6668035	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	179452522	rs12407885	G	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	179462149	rs7549194	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	179494665	rs4620484	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	179497359	rs6698201	T	C	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	179503806	rs6425572	G	A	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	179504025	rs141228272	AAAG	A	3096.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=45.54;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	179504043	rs6658180	C	G	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	179504130	rs6425574	G	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=24.67;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	179520254	rs1410591	C	G	5262.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	179520321	.	G	C	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.342;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:230,57:0.20:287
chr1	179520506	rs1410592	G	A	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	179521932	rs2274626	G	T	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	179528813	.	C	A	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.473;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:105,46:0.30:151
chr1	179544898	rs1079292	T	C	8642.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr1	179590352	rs61826406	C	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	179631242	rs35448215	G	A	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	179852074	rs1281378	T	C	10623.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	179852552	rs605807	T	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	179858444	rs2245425	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	179876900	rs1281380	A	T	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	179876988	rs609521	C	G	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	179877048	rs373127770	C	CTT	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-0.107;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr1	179887125	rs627897	G	A	9940.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	179961257	rs189019668	G	A	7043.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	179961368	.	G	GA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.159;QD=0.47;ReadPosRankSum=-0.616;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr1	179983665	rs2501607	G	A	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	179989742	rs2477120	G	C	5988.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	179992076	rs2477117	A	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	179993793	rs4622030	T	C	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	180010702	rs4652461	T	C	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	180022343	rs9425854	T	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	180059736	rs67852047	GACATACCT	G	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	180059811	rs10798729	A	C	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.102;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	180080115	rs3767202	T	G	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	180144291	rs71118443	C	CA	870.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.798;QD=9.78;ReadPosRankSum=1.454;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:28,61:0.69:89
chr1	180145088	rs2298206	A	G	7270.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr1	180155376	rs2298207	C	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	180155382	rs3216058	AG	A	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	180159726	rs200431574	G	A	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	180159797	rs3215795	TC	T	595.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	180180669	rs164980	A	G	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	180240752	rs3845397	C	T	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	180243524	rs7536561	A	G	13087.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr1	180257692	rs2254465	A	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	180283659	rs2764433	T	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	180471054	rs12723183	C	A	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.656;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:23,43:0.65:66
chr1	180757117	rs34984251	G	GT	253.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	180772414	rs3002117	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	180849494	rs10914123	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	180885430	rs10732273	T	C	18157.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,706:1.00:706
chr1	180897521	rs7544551	C	T	22194.77	.	AC=2;AF=1.00;AN=2;DB;DP=875;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,862:1.00:862
chr1	180897792	rs35197779	ATGC	A	1470.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	180905694	rs3795503	C	T	15239.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.571;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=-0.853;SOR=0.632;set=HC	GT:AD:AF:DP	1/1:1,581:1.00:582
chr1	180913597	rs2331995	A	G	17379.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,682:1.00:682
chr1	181022895	rs2275469	C	A	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	181024404	rs3747956	G	A	12515.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr1	181058313	rs3747955	G	A	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	181058618	rs1416829	C	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	181058643	rs1361365	A	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	181684605	rs12407563	A	G	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	181686216	rs7540850	T	C	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	181719679	rs704332	C	T	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	181727273	rs704329	G	A	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	181750469	rs704328	G	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	181752769	rs144664284	A	AT	1055.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=10.45;ReadPosRankSum=2.836;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:29,72:0.71:101
chr1	181752923	rs36163765	AAGCTT	A	5545.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	181759657	rs704326	G	A	7296.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	182355046	rs2296519	A	G	7376.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	182356399	rs1058111	A	G	8407.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr1	182369078	rs6698722	G	A	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	182369233	rs6674281	A	G	16245.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr1	182429295	rs10572829	CTG	C	227.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,17:0.24:71
chr1	182429728	rs266508	T	C	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	182443462	rs649437	T	C	9214.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	182499295	.	T	TA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.871;QD=1.07;ReadPosRankSum=-0.695;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr1	182549019	rs533259	A	G	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	182551337	rs627928	A	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	182569626	rs1144566	T	C	9153.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	182571003	rs610367	C	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	182573227	rs509476	T	C	10083.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:5,441:0.99:446
chr1	182778367	rs971040	G	A	9569.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	182784022	rs2275171	T	C	8217.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	182850727	rs6677840	T	C	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	182993025	rs10911194	C	T	23368.77	.	AC=2;AF=1.00;AN=2;DB;DP=898;set=Intersection	GT:AD:AF:DP	1/1:1,880:1.00:881
chr1	183072590	rs2296288	T	C	10171.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	183077296	rs3835273	A	AG	1077.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	183077615	rs3765521	C	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.48;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	183077618	rs3765522	C	T	362.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	183079509	rs2296291	C	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	183079853	rs6672093	T	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	183084607	rs3736888	AC	GA	8222.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	183085611	rs10689020	C	CA	283.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=1.097;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr1	183085696	rs6424888	A	G	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	183085755	rs20563	A	G	8950.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr1	183086757	rs2296292	A	C	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	183093875	rs20557	T	C	6036.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	183094547	rs20558	T	C	8571.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.892;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=3.502;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=-0.610;SOR=0.590;set=HC	GT:AD:AF:DP	1/1:1,335:1.00:336
chr1	183094802	rs10797850	G	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	183095185	rs55856623	TAA	T	2320.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:4,89:0.96:93
chr1	183095234	rs1886501	A	G	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	183095477	rs2296293	G	A	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	183096253	rs3066017	T	TATA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	183096634	rs1413390	G	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	183096668	rs1413389	C	T	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	183097956	rs34133998	G	GTTA	4319.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	183098001	rs10797851	A	G	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	183099701	rs2296300	G	A	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	183100307	rs10679924	C	CAAAA	617.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.89;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	183100555	rs2333620	T	C	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.40;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	183100562	.	G	GT	4916.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	183100563	rs55951405	G	GTGTGTGT	4542.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=45.89;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	183100596	rs2333619	A	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	183100596	.	ATT	GTG	757	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=3;HapScore=1;MGOF=53;MMLQ=28;MQ=57.21;NF=1;NR=28;PP=757;QD=27.9471680987;SC=GTGTGTGTGTATTGTCTTATC;SbPval=0.62;Source=Platypus;TC=30;TCF=1;TCR=29;TR=29;WE=183100606;WS=183100586;set=Platypus	GT:AD:AF:DP	1/1:1,29:0.97:30
chr1	183100598	rs4047797	T	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	183101427	rs148796825	AAAT	A	848.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.15;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	183101444	rs12071514	A	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.17;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	183101451	rs12066735	T	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.63;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	183101471	rs12061219	G	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	183101686	rs12095664	G	A	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	183104013	rs2296299	G	A	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	183104340	rs35182436	AT	A	2219.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=19.30;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	183105399	rs2296296	C	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	183105534	rs20560	T	C	11415.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.166;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=1.478;SOR=0.548;set=HC	GT:AD:AF:DP	1/1:1,448:1.00:449
chr1	183105705	rs20561	G	A	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	183106739	rs10797854	G	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	183155482	rs684527	C	A	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	183155700	rs6678888	C	A	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	183155715	rs60707856	CT	C	5055.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	183155717	rs61418038	C	A	5064.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	183155778	rs6703054	A	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	183176970	rs10668798	G	GT,GTT	1662.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.808;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=13.137;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.30;MQRankSum=0.605;QD=16.80;ReadPosRankSum=1.076;SOR=0.148;set=HC	GT:AD:AF:DP	1/2:16,25,58:0.25,0.59:99
chr1	183177218	rs647347	A	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	183177243	rs61809149	G	A	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	183205523	.	CAAA	C	374.73	.	AC=1;AF=0.500;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.72;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	183471295	rs789193	G	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	183481943	rs59379855	C	CT	121.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.696;QD=8.66;ReadPosRankSum=-1.172;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	183486859	rs789169	G	A	9879.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	183498297	.	T	C	337.77	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	183516100	rs699246	G	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	183516440	rs2702182	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	183525452	rs699244	T	G	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	183529339	rs55761650	G	A	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	183532580	rs17849502	G	T	7365.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	183534935	rs2296164	C	T	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	183542323	rs17849501	C	T	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	183542387	rs2274064	T	C	6535.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	183617266	rs17436878	C	G	10401.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr1	183711483	rs3820689	C	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	183861021	rs75352181	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	183895435	rs4382680	A	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	183908222	rs3010040	C	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	183909717	rs2296713	G	A	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	183909934	rs1887278	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	183942950	rs2296714	C	T	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	183944089	rs2077202	A	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	183944444	rs2378795	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	183947757	rs3833521	G	GA	234.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	184006128	rs74767794	A	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	184006549	rs114661926	C	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	184020945	rs2274432	G	A	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	184023529	rs1046934	A	C	8219.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr1	184476621	rs9633308	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	184692999	rs71101940	T	TA	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.85;MQRankSum=0.992;QD=8.87;ReadPosRankSum=0.783;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr1	185056945	rs12043617	A	G	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	185060950	rs201420664	CT	C	656.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.543;QD=10.77;ReadPosRankSum=-0.654;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:10,51:0.84:61
chr1	185069314	rs60678736	C	CT	1108.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	185069561	rs1046592	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	185097959	rs41264588	G	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	185113216	rs150245199	AAG	A	1048.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;QD=40.34;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	185119794	rs1544051	C	T	195.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	185137454	rs58809696	T	TAAATGATAGAC	2703.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.43;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	185137461	rs56166198	A	T	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	185137464	.	T	TAA	2525.73	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	185137628	rs10797999	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	185143721	rs10489579	A	G	5830.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	185144347	rs6696591	T	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	185153545	rs76544683	G	GT	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	185171869	rs6698109	A	G	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	185176015	rs2146328	A	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	185240474	rs12041704	A	G	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	185259731	rs2378909	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	185267114	rs10174	A	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	185833565	rs7556537	A	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	185833880	rs41458549	A	G	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	185834847	rs34137386	GTTTC	G	1881.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	185988567	rs11290212	CT	C	59.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.47;ReadPosRankSum=-0.180;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	186022032	rs10911808	T	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	186026474	rs12129650	T	C	7564.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	186030902	rs10737266	G	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	186031041	rs7522627	C	T	6779.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	186039006	rs761905	C	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	186050417	rs10798035	A	G	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	186055371	rs6425017	A	G	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	186057181	rs10911816	T	C	8797.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	186064760	rs1022671	A	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.32;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	186076224	.	C	CT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.164;QD=0.34;ReadPosRankSum=2.007;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:108,22:0.17:130
chr1	186077463	rs1555495	A	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	186081918	rs7555520	C	T	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	186086578	rs10157742	G	A	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	186089072	rs2891230	G	A	8353.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	186089112	rs2383434	T	C	8008.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.26;ReadPosRankSum=1.340;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:2,315:0.99:317
chr1	186089363	rs10752962	C	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	186092076	rs2057388	A	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	186277088	rs68069719	G	C	33043.77	.	AC=2;AF=1.00;AN=2;DB;DP=1293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.65;QD=25.76;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,1283:1.00:1283
chr1	186292803	rs3818293	C	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	186313249	rs2950829	A	G	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	186330695	.	TA	T	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.373;QD=1.83;ReadPosRankSum=-1.368;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:54,24:0.31:78
chr1	186357523	rs1290390	T	C	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	186368338	rs59324641	AT	A	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=1.632;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr1	186649221	rs2745557	A	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	186839861	rs7547993	G	A	7849.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	186863385	rs2307193	TAA	T	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	186908385	rs2307200	C	T	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	186919732	rs4650709	A	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	186919863	rs6661772	G	A	8846.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr1	186919993	rs969357	G	A	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	186925168	rs5007825	A	G	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	186925194	rs5007824	T	C	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	186925271	rs374673337	T	C	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	186925552	rs2307199	T	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	186946912	rs2307198	G	A	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	187610538	rs10157977	C	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	187610698	rs10157987	C	A	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	187610777	rs61822202	C	G	11319.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr1	187610852	rs10159182	A	C	13414.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:1,505:1.00:506
chr1	192128183	rs4454527	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	192129370	rs4329489	G	A	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	192335271	rs59139714	C	CTAAT	1162.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	192544795	rs2984920	A	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	192545099	rs7535818	G	A	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	192779227	rs2746073	T	A	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	192780088	rs5779653	GCT	G	16326.73	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr1	192780337	rs10607546	CAA	C	143	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	193051685	rs2275444	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	193051893	rs201236241	AT	A	238.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.596;QD=8.23;ReadPosRankSum=-1.132;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr1	193074371	rs10801175	A	G	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	193074651	rs10921310	T	A	9081.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr1	193090865	rs10737621	C	A	7251.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.349;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	193094375	rs4466634	T	C	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	193104827	.	G	A	23	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=5;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=23;QD=28.8856062736;SC=TTTTTTTCTGGAAAAATTTTT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=193104835;WS=193104817;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	193202001	rs10921328	C	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	193205272	rs3738244	T	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	196227526	rs977157	A	G	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	196242764	rs558895	T	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	196251522	rs2477357	T	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	196254970	rs2477360	C	T	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	196311513	rs6658788	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	196461513	rs4607811	C	T	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	196654324	rs1061147	A	C	12131.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:1,476:1.00:477
chr1	196658497	rs482934	G	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	196658905	rs12029785	G	A	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	196659237	rs1061170	C	T	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	196682947	rs2274700	G	A	7224.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=25.90;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	196684574	rs6664877	C	T	152.03	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	196684574	.	CA	TG	174	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=5;HapScore=2;MGOF=14;MMLQ=23;MQ=60.0;NF=4;NR=0;PP=174;QD=56.8669687156;SC=TTTACGACAACAAATTCTCAC;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=196684583;WS=196684568;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	196684575	rs6677460	A	G	152.03	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	196684625	rs203674	G	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	196705926	rs375046	C	A	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	196710916	rs16840522	T	C	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	196874356	rs10801578	G	T	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	196887181	rs1971579	T	G	88.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	196920178	rs3828032	C	T	5773.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=3.207;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=10.677;QD=25.55;ReadPosRankSum=1.936;SOR=0.381;set=HC	GT:AD:AF:DP	1/1:1,225:1.00:226
chr1	196926956	rs3748556	C	T	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	196926973	rs3748555	C	A	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	196946775	rs9427662	T	C	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	197053561	rs369160994	TA	T	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.062;QD=3.70;ReadPosRankSum=1.851;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr1	197070901	rs964201	A	G	7333.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	197104319	rs367946511	G	A	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.387;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:238,71:0.23:309
chr1	197316435	rs1337167	T	C	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	197325908	rs2786098	T	G	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	197390368	rs3902057	A	G	9442.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	197407942	rs980371	A	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	197480927	rs12142127	C	T	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	197482167	rs2013617	C	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	197510025	rs3902061	G	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	197510299	rs3850628	G	A	127.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	197515253	rs11276673	ATGTTCAG	A	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	197515715	rs4303099	G	A	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	197515777	rs4316386	A	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	197515981	rs10922249	T	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	197576307	rs11411505	A	AT	765.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	197704717	rs17641524	C	T	7577.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.86;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	197741951	rs2477067	C	A	3096.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.243;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.46;ReadPosRankSum=-1.512;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,131:0.99:132
chr1	197742171	rs2488396	C	T	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	197874949	rs2270763	T	C	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	197876533	rs1546244	C	A	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	197890422	rs12122995	C	G	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	197898023	rs10664707	C	CAA	631.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.32;ReadPosRankSum=0.145;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr1	198214590	rs143748044	C	T	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	198225462	.	G	T	2784.77	.	AC=2;AF=1.00;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	198248163	.	C	T	6195.77	.	AC=2;AF=1.00;AN=2;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	198492454	rs1055160	T	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	198498325	rs374339328	AATATAT	A	2135.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.341;QD=22.48;ReadPosRankSum=0.144;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:4,91:0.96:95
chr1	198691478	.	AAT	A	60	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=60;QD=34.5;SC=TGTGATATATAATATATATAT;SbPval=0.23;Source=Platypus;TC=8;TCF=1;TCR=7;TR=2;WE=198691487;WS=198691468;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr1	198701289	rs1932433	T	C	210.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	198704294	rs7540378	C	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	198717218	.	GTT	G	588.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;QD=21.03;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:4,24:0.86:28
chr1	198721651	rs149409109	A	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	200080462	rs111949351	A	AT	228.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.330;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=0.942;QD=7.62;ReadPosRankSum=-1.341;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	200080463	rs3828110	C	T	151.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.598;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=-0.807;QD=5.06;ReadPosRankSum=1.467;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	200080464	rs202167972	C	A	231.82	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.733;QD=7.73;ReadPosRankSum=-2.797;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	200089872	rs10494808	C	T	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	200090120	rs3762398	G	A	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	200143442	rs1060061	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	200182654	rs6427805	T	C	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	200311868	rs2790109	C	G	7074.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	200312546	.	CAA	C	158.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=6.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.91;ReadPosRankSum=0.215;SOR=2.807;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	200342046	rs6677545	A	C	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	200544650	rs35571944	TAC	T	2758.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.248;QD=28.15;ReadPosRankSum=-1.913;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:4,94:0.96:98
chr1	200567596	rs2809358	T	G	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	200569392	rs2809357	C	A	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	200574959	rs2808238	T	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	200575744	rs10577607	CTAAA	C	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	200575794	rs2794410	A	G	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	200578093	rs2794409	G	A	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	200583380	rs2808241	T	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	200594240	rs2809350	G	A	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	200610525	rs5780032	TA	T	132.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=1.490;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	200618238	rs6665604	T	C	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	200619530	rs2809365	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	200776641	rs7552353	C	T	11766.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.901;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-0.817;SOR=0.266;set=HC	GT:AD:AF:DP	1/1:1,465:1.00:466
chr1	200802045	rs78225055	C	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	200816521	rs2172666	G	T	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.83;QD=25.66;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	200816658	rs2131834	T	C	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	200843307	rs34290042	T	TCCCG	2425.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	200843374	rs3738251	G	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	200867552	rs2271017	C	T	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	200880869	rs45547233	A	C	11024.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr1	200880978	rs296520	C	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.56;QD=28.69;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	200943793	rs71991687	CAGGA	C	9446.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	200944840	rs296563	T	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	200952336	rs12562818	C	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	200954186	rs12141466	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	200956288	rs2275485	A	G	9626.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:1,376:1.00:377
chr1	200957691	rs2297912	G	C	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	200958111	rs12143520	A	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	200959052	rs57758014	T	G	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	200959302	rs2297911	G	A	16074.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,616:1.00:616
chr1	200960886	rs12123633	C	T	5741.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	200960898	rs12145860	A	T	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	200960915	rs12142447	T	C	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	200965601	rs10920088	G	A	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	200967490	rs10920089	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	200968879	rs16847508	G	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	200969766	rs6692235	G	A	15328.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr1	200969921	rs6692427	G	A	8071.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	200969942	rs6667956	A	G	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	200969983	rs6656481	T	C	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	200971521	rs56770229	G	A	10010.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	200971528	rs41269929	G	T	9488.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.84;SOR=1.465;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	201009182	rs12139527	A	G	10187.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr1	201009897	rs6427875	T	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	201010862	rs6675915	T	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	201012247	rs2279944	C	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.79;SOR=3.109;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	201016646	rs2297905	C	T	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	201017687	rs35713982	C	CT	2823.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	201020105	rs6702590	A	G	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	201021619	rs12029212	C	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	201030668	rs2297904	G	A	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	201030988	rs61614423	C	T	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	201031059	rs41267501	A	G	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	201047062	rs4915476	G	A	16642.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	201047075	rs4915477	A	G	17761.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr1	201054197	rs41267505	G	T	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	201079235	rs1325310	C	T	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	201079344	rs12406479	G	C	11401.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	201079458	rs1325309	T	A	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	201112981	rs8158	A	G	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	201113118	rs3738266	A	G	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	201115822	rs3752978	A	G	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	201116018	rs3752979	C	G	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	201122784	rs6684980	C	T	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	201122947	rs1925361	T	G	10279.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr1	201163191	rs1107128	G	T	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	201166383	rs4915221	G	A	10017.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr1	201166435	rs11589317	T	C	8040.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	201168499	rs1534057	G	A	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	201168589	rs1534056	T	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	201169554	rs2365299	T	G	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	201170772	rs10157730	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	201170824	rs10158976	C	G	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	201171007	rs10800762	T	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	201175227	rs832156	C	A	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	201175715	rs1341631	G	T	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr1	201176018	rs10753895	A	G	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	201176108	rs12094334	G	A	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	201176968	rs12063867	A	G	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	201177246	rs72751165	T	C	8503.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr1	201177278	rs7551098	C	T	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	201177538	rs7551538	G	T	10143.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr1	201178470	rs12757706	G	A	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	201178904	.	A	G	1479	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=44;MMLQ=26;MQ=48.49;NF=53;NR=33;PP=1479;QD=17.6019908436;SC=GGGGGTTCTGAAGAAATGGGG;SbPval=0.76;Source=Platypus;TC=152;TCF=85;TCR=67;TR=86;WE=201178912;WS=201178894;set=Platypus	GT:AD:AF:DP	0/1:66,86:0.57:152
chr1	201178924	.	AAG	GAA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=1;MGOF=35;MMLQ=21;MQ=46.71;NF=57;NR=42;PP=2944;QD=20;SC=GTCAGTGAATAAGGCAGGTTA;SbPval=0.81;Source=Platypus;TC=160;TCF=80;TCR=80;TR=99;WE=201178934;WS=201178914;set=Platypus	GT:AD:AF:DP	0/1:61,99:0.62:160
chr1	201181217	rs12070918	A	G	14431.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.68;ReadPosRankSum=-1.453;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:2,560:1.00:562
chr1	201181223	rs12070919	A	G	14822.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.87;ReadPosRankSum=-0.777;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:2,571:1.00:573
chr1	201181920	rs12060924	G	T	8338.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	201182779	rs2282413	A	G	10358.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	201183363	rs2282415	C	T	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	201183402	rs1568810	T	C	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	201184275	rs2275673	C	T	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	201187764	rs10920144	T	C	10615.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,418:1.00:418
chr1	201187828	rs3738268	T	C	7436.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	201187954	rs6667020	C	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	201193668	rs6687494	G	T	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	201195119	rs3738270	C	T	20272.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,776:1.00:776
chr1	201197331	rs3753971	G	A	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	201263330	rs1779301	C	G	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	201282573	rs35507614	A	G	15007.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:2,600:1.00:602
chr1	201285759	rs1779297	A	G	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	201285909	rs1534051	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	201286614	rs11336457	GA	G	1455.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:8,79:0.91:87
chr1	201286628	rs1772823	C	G	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr1	201288007	rs1794868	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	201288898	rs1722759	A	C	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	201290968	rs1779292	T	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	201291066	rs2071960	C	T	12623.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr1	201292110	rs1779288	T	C	9252.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	201293970	rs1620046	C	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	201294278	rs41269943	G	A	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr1	201331554	rs1104859	T	G	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	201331664	rs2365652	C	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	201334382	rs3729547	G	A	7213.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	201334795	rs3729845	C	T	15407.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr1	201335899	rs1573230	C	T	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	201337170	rs3729842	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	201338553	rs10800776	T	C	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	201338586	rs10920183	A	G	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	201338896	rs10920184	T	C	10140.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	201339043	rs12049476	C	T	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	201341175	rs45533739	CAGAAG	C	8559.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	201341341	rs868407	C	T	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	201353827	rs10920189	G	C	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	201356428	rs4915230	C	A	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.30;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	201368463	rs28364652	G	GT	11110.73	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=38.99;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	201383616	rs2026593	A	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	201383643	rs2026594	A	C	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	201437477	rs1256930	A	T	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	201453289	rs576697	T	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	201687406	rs11588142	G	A	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	201687451	rs11576721	A	G	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	201688515	rs9662744	T	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	201688832	rs67974334	T	C	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	201754411	rs59543474	T	TC	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=2.515;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr1	201772863	rs34105833	T	TG	4681.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	201773729	rs199751852	AAT	A	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.448;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr1	201788804	rs11803449	G	A	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	201824390	rs11576508	G	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	201837934	.	CGTGT	C,CGT	5471.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=1.805;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;MQRankSum=0.413;QD=18.67;ReadPosRankSum=2.547;SOR=0.619;set=HC	GT:AD:AF:DP	1/2:22,34,237:0.12,0.81:293
chr1	201840059	rs150361248	GTTATT	G	1855.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	201840464	rs2644124	T	C	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	201844128	rs2678203	G	A	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	201860626	rs2250377	A	G	18171.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,687:1.00:687
chr1	201861016	rs2279681	C	G	12239.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr1	201865763	rs8028	A	G	8454.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr1	201958312	rs35164608	C	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	201966774	rs10920300	T	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	201970562	rs4332408	T	C	10677.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr1	201980119	rs2819361	C	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.02;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	202092046	rs3795593	C	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	202092360	rs3795595	G	A	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	202092415	rs3795596	A	G	14422.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr1	202092580	rs7516762	T	C	11135.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	202103802	rs4342901	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	202107422	.	AACACACAC	A,AAC	2510.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=81;set=Intersection	GT:AF:DP	1/2:0.25,0.75:67
chr1	202113835	rs4989100	T	G	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	202117975	.	C	CTTTT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.59;ReadPosRankSum=0.319;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	202122783	rs11590076	C	A	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	202130754	rs3934648	T	C	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	202152859	rs2993441	A	C	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=26.49;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	202155331	.	CTGCCCCCT	C	7791.73	.	AC=2;AF=1.00;AN=2;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	202155704	.	G	A	7481.77	.	AC=2;AF=1.00;AN=2;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	202183327	rs79821910	C	T	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	202266547	rs788827	C	T	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	202266607	rs788826	C	T	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	202269785	.	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=6.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=1.262;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr1	202274936	rs705762	T	C	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr1	202276494	rs896551	C	T	13875.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:1,536:1.00:537
chr1	202287206	rs788795	T	C	9217.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:2,357:0.99:359
chr1	202287537	rs788794	G	A	11016.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr1	202287813	rs788793	T	C	21540.77	.	AC=2;AF=1.00;AN=2;DB;DP=836;set=Intersection	GT:AD:AF:DP	1/1:0,816:1.00:816
chr1	202304868	rs14451	T	C	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	202386075	rs2843413	T	C	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=25.85;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	202418408	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.420;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	202443000	rs11587179	C	A	10089.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.745;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;MQRankSum=8.718;QD=25.81;ReadPosRankSum=-0.817;SOR=0.303;set=HC	GT:AD:AF:DP	1/1:1,390:1.00:391
chr1	202533516	rs12133781	G	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	202572105	rs55968420	GCC	G	42991.73	.	AC=2;AF=1.00;AN=2;DB;DP=1089;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=40.94;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,1050:1.00:1050
chr1	202574784	rs1968583	G	A	12661.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr1	202703053	rs4310498	G	A	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=1.378;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	202705455	rs1141109	G	C	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	202715244	rs3216061	G	GA	3240.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.87;MQRankSum=0.453;QD=23.15;ReadPosRankSum=0.993;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:2,138:0.99:140
chr1	202715284	rs1141108	G	A	8672.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=25.43;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	202718028	rs1892163	A	G	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	202718202	rs1892164	G	A	16341.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,644:1.00:644
chr1	202722277	rs4950742	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	202731986	rs140328663	C	CCTCAA	742.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	202733238	rs3196669	C	T	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	202735751	rs12140729	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	202777739	.	G	A	2416.77	.	AC=2;AF=1.00;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	202889207	rs7520522	T	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	202931839	rs2232854	G	A	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	202931958	rs2232853	G	A	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	202931998	rs2232852	C	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	202933657	rs2232847	T	A	158.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	202933992	rs1418445	G	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	202934763	rs201964547	TTC	T	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-1.427;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	202934764	rs56932949	TC	T	101.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=1.520;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	202936456	rs12137082	G	C	1776.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.785;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.229;QD=23.07;ReadPosRankSum=-1.283;SOR=0.454;set=HC	GT:AD:AF:DP	1/1:1,76:0.99:77
chr1	202936479	rs34807965	CG	C	406.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=12.270;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.504;QD=16.96;ReadPosRankSum=-0.877;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr1	202936491	.	G	T	968.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.392;QD=35.88;ReadPosRankSum=1.226;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr1	202977809	rs6678040	G	A	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	202978032	rs1418444	C	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	203004627	rs5780134	A	AC	4910.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.258;QD=26.12;ReadPosRankSum=-0.307;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:2,186:0.99:188
chr1	203006243	rs782805	A	G	13535.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.075;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.79;ReadPosRankSum=1.230;SOR=0.263;set=HC	GT:AD:AF:DP	1/1:1,545:1.00:546
chr1	203008174	rs61821060	G	C	18819.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,730:1.00:730
chr1	203008286	rs10920553	C	G	10236.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr1	203012661	rs372177187	CGT	C	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.753;QD=0.87;ReadPosRankSum=0.139;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:199,26:0.12:225
chr1	203012705	rs7547566	C	G	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	203012906	rs4950908	G	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	203025096	.	C	CT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.947;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr1	203040673	rs9803710	A	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	203053768	rs903356	T	C	8244.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	203098275	rs2228079	T	G	17801.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,676:1.00:676
chr1	203098455	rs10920569	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	203137784	rs35823777	A	ACT	13489.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	203148633	rs4950927	A	G	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	203274618	rs55810826	G	A	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=25.44;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	203274936	rs6682806	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	203311736	rs1891180	T	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	203652444	rs1419114	A	G	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	203667409	rs2228445	T	C	8171.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=25.78;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	203667577	rs139986068	TA	T	1379.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=27.05;SOR=1.848;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	203677250	rs3753036	G	A	7028.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	203679934	rs2032018	A	G	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	203689936	rs4951112	C	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	203698627	rs2365862	C	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	203698672	rs5780193	CA	C	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=1.045;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:14,40:0.74:54
chr1	203740615	rs3737976	T	C	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	203741368	rs3737973	C	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	203766827	rs872032	T	C	8377.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	203787700	rs4951260	T	C	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	203803016	rs6694647	A	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	203821200	rs7512877	G	A	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.354;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	204006095	rs41264273	A	G	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	204006538	rs4951291	T	C	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	204006597	rs4951039	G	A	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	204010389	rs10437107	G	T	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	204081655	rs374243810	A	ACACACACT,ACACACACACT	2043.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=57;set=Intersection	GT:AF:DP	1/2:0.33,0.67:43
chr1	204082002	rs2293336	C	T	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	204103618	rs2293335	G	A	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	204110334	rs10793755	A	G	8423.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	204115934	rs2293337	C	T	5380.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	204129671	rs5707	A	C	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	204159542	rs1132506	G	C	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	204159544	rs35128240	C	CA	2003.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	204159611	rs71745629	CT	C	6724.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	204159787	rs4889	G	C	7141.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	204214975	.	TAC	T	307.73	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,20:0.27:73
chr1	204379617	rs3014626	T	C	6185.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	204409281	rs3014631	C	G	6744.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	204413297	rs2292459	C	T	7030.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	204413297	.	CGG	TGA	1710	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=3;HapScore=1;MGOF=17;MMLQ=26;MQ=60.0;NF=48;NR=48;PP=1710;QD=18.3694570298;SC=GGGCCTGTTTCGGAGAAAGGG;SbPval=0.47;Source=Platypus;TC=99;TCF=51;TCR=48;TR=96;WE=204413307;WS=204413287;set=Platypus	GT:AD:AF:DP	1/1:3,96:0.97:99
chr1	204413299	rs2292460	G	A	7030.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	204418889	rs2999492	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	204418939	rs3014637	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	204419217	rs371889705	C	CAGGCTG	2791.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=2.194;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	204426036	rs3014600	C	A	129.74	.	AC=1;AF=0.500;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;QD=7.21;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	204426052	.	A	C	144	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.9982;HP=3;HapScore=2;MGOF=48;MMLQ=23;MQ=58.55;NF=6;NR=5;PP=144;QD=16.2519284134;SC=ACACACACACACCAGCCGAAC;SbPval=0.51;Source=Platypus;TC=12;TCF=7;TCR=5;TR=11;WE=204426060;WS=204426042;set=Platypus	GT:AD:AF:DP	0/1:1,11:0.92:12
chr1	204429212	rs5013460	AT	TG	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	204429215	rs5013458	TA	AG	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.84;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	204429285	rs2999485	A	G	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	204429838	rs2271414	C	G	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	204433093	rs2271415	A	C	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.349;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	204433511	rs11455991	T	TC	1029.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	204434277	rs2942149	T	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	204438334	rs1124777	C	T	8166.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	204438643	rs1553921	G	T	7231.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=3.434;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=1.639;SOR=0.543;set=HC	GT:AD:AF:DP	1/1:1,279:1.00:280
chr1	204494756	.	G	GT	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=3.849;QD=1.20;ReadPosRankSum=1.183;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:159,48:0.23:207
chr1	204495595	rs200388119	G	GT	599.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-0.627;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:14,42:0.75:56
chr1	204505976	rs35493922	GA	G	350.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.63;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	204506107	rs4245738	C	T	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	204512100	rs4252717	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	204515863	rs2290855	C	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	204516025	rs2290854	A	G	14179.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,540:1.00:540
chr1	204518842	rs4245739	C	A	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	204587240	rs3747632	G	A	7792.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	204915393	rs2595960	A	G	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	204921258	rs12141283	A	G	10583.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.90;ReadPosRankSum=0.733;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:2,423:1.00:425
chr1	204943285	rs2595945	A	T	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	204943992	rs2794861	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	204945618	rs12124296	G	A	11549.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr1	204951209	rs2278796	C	T	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	204954993	rs2278795	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	204955319	rs11240324	G	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.51;SOR=2.078;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	204955329	rs11240325	A	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	204966170	rs16854920	T	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	204966690	rs2794858	G	A	8680.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	204966749	rs2595944	A	G	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	204970148	rs10716288	TC	T	1199.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	204970243	rs4950976	A	G	5740.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	204970302	rs4951151	T	C	8818.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	204970495	rs4951152	C	A	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	204978533	rs1530745	A	G	17116.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr1	204978643	rs1530744	C	A	24850.77	.	AC=2;AF=1.00;AN=2;DB;DP=962;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,946:1.00:946
chr1	205028581	rs2305278	C	G	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	205030862	rs41264869	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	205031116	rs2229866	C	T	13776.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr1	205031744	rs2242001	G	A	11109.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr1	205031769	rs2242000	G	A	10332.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr1	205033283	rs1470637	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	205033374	rs2305277	T	C	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	205034488	rs4460698	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	205038731	rs2305275	C	T	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	205039295	rs56283998	A	C	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	205041542	rs3903399	T	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	205052939	rs4950979	G	A	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	205053219	rs4951168	C	T	8289.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	205085358	rs12025836	T	C	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	205129319	rs1062715	G	A	4675.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	205130413	rs3851294	A	G	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	205240913	rs9659978	A	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	205274174	rs10793728	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	205275206	rs4951195	AG	TT	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	205275421	rs4951197	A	G	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	205290794	rs3738746	G	A	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	205290814	rs145951035	T	C	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	205290965	rs35321028	C	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	205307789	rs11240441	G	A	5184.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	205308335	rs1105385	G	A	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	205308368	rs1105387	C	T	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	205308591	rs1105388	C	T	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	205312280	rs7549293	C	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	205325458	rs2298251	G	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	205385498	rs6688045	C	T	7860.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	205492756	rs7529442	A	G	8313.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	205495392	rs2297837	A	G	8768.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	205495889	rs34804445	GCT	G	20851.73	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=43.99;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr1	205495976	rs1544154	A	G	13647.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=25.46;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,536:1.00:536
chr1	205561495	rs143503253	TC	T	158.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-1.757;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	205561511	rs6593956	T	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	205568442	rs2282452	G	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	205600653	rs6593957	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	205615936	rs201002461	T	TA,TAA	73.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=87;set=Intersection	GT:AF:DP	0/1:0.22:67
chr1	205615946	.	AC	A	422	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=9;HapScore=4;MGOF=6;MMLQ=27;MQ=60.12;NF=0;NR=13;PP=422;QD=33.3846153846;SC=TAAAAAAAAAACACCTTTTTA;SbPval=1.0;Source=Platypus;TC=38;TCF=0;TCR=38;TR=13;WE=205615955;WS=205615926;set=Platypus	GT:AD:AF:DP	1/1:25,13:0.34:38
chr1	205615947	rs4951250	C	A	1223.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.540;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.83;ReadPosRankSum=1.292;SOR=0.070;set=HC	GT:AD:AF:DP	1/1:7,58:0.89:65
chr1	205696671	rs1772147	G	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	205740829	rs150275500	T	TC	2906.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	205764433	rs56052552	A	C	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	205801872	rs1361754	A	G	10543.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	205809642	rs10900525	G	C	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	205810947	rs11240573	C	T	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	205812912	rs7518979	A	G	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	205814497	rs1891460	T	C	17931.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,703:1.00:703
chr1	205814695	rs71633564	A	G	6464.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr1	205817018	rs11540015	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.25;QD=25.86;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	205819039	rs11540016	C	T	11053.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr1	205819104	rs11540014	G	A	11449.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:1,453:1.00:454
chr1	205886381	rs11240591	C	T	14357.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:4,562:0.99:566
chr1	205888143	rs11240593	G	C	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	205890679	rs12759719	T	C	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr1	205896293	rs73082393	T	G	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	205896475	rs7366204	C	T	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	205901788	rs3811423	G	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	205902242	rs41305064	G	A	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	206224635	rs35369693	G	C	12407.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr1	206230958	rs28632197	G	A	14515.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr1	206230986	rs28676508	G	A	12442.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr1	206231152	rs28529127	G	A	9592.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	206231203	rs28415467	G	A	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	206231259	rs33985287	A	G	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.993;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	206231264	rs33933482	G	A	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=2.085;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	206516261	rs201036189	C	T	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-0.022;QD=5.67;ReadPosRankSum=0.352;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:69,35:0.34:104
chr1	206566195	rs200978831	C	T	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.96;MQRankSum=-5.410;QD=2.48;ReadPosRankSum=-1.381;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:413,119:0.22:532
chr1	206566860	rs11361942	TA	T	1031.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:82,78:0.49:160
chr1	206566904	rs2919105	T	C	3940.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:175,189:0.52:364
chr1	206567100	rs2480377	C	T	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:197,189:0.49:386
chr1	206579936	rs201644221	A	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.40;MQRankSum=-3.422;QD=4.06;ReadPosRankSum=0.130;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr1	206603535	rs2297539	G	A	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	206626779	rs2483059	A	G	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr1	206626828	rs2483058	C	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	206631518	rs10864212	G	T	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	206647742	rs1539242	A	G	9271.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	206667441	rs2184030	G	A	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	206670827	rs12754274	G	T	6997.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:1,270:1.00:271
chr1	206680983	rs2095124	A	C	10460.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	206758077	rs4418597	T	A	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	206766819	rs138574590	AGAGC	A	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-0.320;QD=20.17;ReadPosRankSum=0.814;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	206766845	.	AGTGTGTGTGTGCGTGT	A,AGT	1143.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.70;QD=81.70;SOR=1.765;set=HC	GT:AD:AF:DP	1/2:0,9,5:0.64,0.36:14
chr1	206766861	.	T	A	87.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.599;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-0.921;QD=6.27;ReadPosRankSum=-0.065;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	206766863	.	T	A	505.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.60;QD=36.13;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	206770283	rs11284613	AC	A	728.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	206772194	rs373767533	ACT	A	1127.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	206772753	rs4845116	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	206773659	rs6662929	A	G	9293.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	206776200	rs6668054	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	206776203	rs6675741	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	206856203	rs41348452	C	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.574;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	206856486	rs17014165	C	T	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	206858647	rs181345810	A	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.45;SOR=1.572;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	206904644	rs58152125	C	CGT	2191.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:17,75:0.82:92
chr1	206905040	rs34526867	C	T	11233.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:1,427:1.00:428
chr1	206943351	rs3024494	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	207009910	rs2243170	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	207014472	rs2243188	A	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	207015957	rs2243191	T	C	4667.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	207040659	rs2232360	G	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	207076156	rs116017349	T	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	207091138	.	AT	A	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.098;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:53,22:0.29:75
chr1	207195779	rs2842726	A	G	6483.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	207237233	.	GGT	G	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.736;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr1	207241440	rs4030464	AGT	A	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.292;QD=1.71;ReadPosRankSum=-1.705;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:71,12:0.14:83
chr1	207243851	rs923109	A	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	207245045	rs11120137	T	C	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	207245080	rs35425352	A	AT	606.82	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:5,35:0.88:40
chr1	207288897	rs12031629	T	C	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.289;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	207500293	rs4844591	C	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	207504669	rs2184476	G	A	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	207510289	rs2490257	T	C	11021.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr1	207510548	rs10746462	A	G	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	207510596	rs10746463	G	A	8729.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	207512577	rs10641442	T	TTAA	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	207532861	rs56253023	C	CTTT	1863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.26;ReadPosRankSum=-1.792;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:25,67:0.73:92
chr1	207627693	rs3813946	T	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	207641840	rs2063143	C	T	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	207642295	rs1507764	G	A	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	207646322	rs1048971	G	A	7971.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	207646462	rs17615	G	A	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	207646898	rs4308977	T	C	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	207646923	rs17616	G	A	6735.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	207653178	rs12032512	C	G	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	207653395	rs17617	C	A	8178.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.726;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=1.741;SOR=0.239;set=HC	GT:AD:AF:DP	1/1:1,316:1.00:317
chr1	207653444	rs17258996	T	A	7705.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	207679307	rs4844600	A	G	12121.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr1	207782916	rs4844609	A	T	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	207784968	rs3818361	A	G	17442.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr1	207795320	rs2296160	A	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	207850652	.	CAAAA	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=2.316;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr1	207888626	rs6677310	C	T	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr1	207888704	rs2796255	T	C	5454.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr1	207888760	rs2796261	C	T	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	207890866	rs2796257	T	C	17682.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.69;QD=25.19;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,702:1.00:702
chr1	207941191	rs2724374	G	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	207959122	.	CTTT	C	177.87	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	207959136	rs373519619	T	TAA	176.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.37;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	207976037	rs145834945	G	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	208050301	rs17009221	A	G	9083.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr1	208050360	rs17009223	G	A	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	208061530	rs2235766	A	G	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	208062260	rs2745952	T	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	208063100	rs5780411	G	GA	564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.428;QD=3.60;ReadPosRankSum=1.142;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:106,51:0.32:157
chr1	208072626	rs12029239	A	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	208207839	rs3736963	G	A	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	208208034	rs12128144	G	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	208208124	rs6540448	C	A	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	208211887	rs905100	T	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	208213125	rs1751580	A	G	12567.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:2,484:1.00:486
chr1	208219164	rs1536471	A	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	208252489	rs2274445	T	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	208255877	rs6540453	T	C	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	208276399	rs10654695	C	CCTCT	8725.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	208390155	rs4844657	C	T	27569.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,632:1.00:632
chr1	208390162	rs4844658	T	C	27456.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,612:1.00:612
chr1	209605636	rs3842530	TAGCAGCAGCAGC	T	15195.73	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:1,341:1.00:342
chr1	209779805	rs880783	G	A	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	209781417	rs112536633	TAC	TACAC,T	319.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=38;set=Intersection	GT:AF:DP	0/1:0.50:30
chr1	209792015	rs5780528	A	AC	10144.73	.	AC=2;AF=1.00;AN=2;DB;DP=290;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	209799253	rs2179402	A	G	7970.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr1	209804095	rs4844863	G	A	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	209807972	rs1130667	G	A	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr1	209811886	rs2076356	T	G	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	209812063	rs2076357	T	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	209849002	rs3817870	T	C	9252.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr1	209849399	rs3830766	AG	A	6219.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	209849406	rs1473683	T	G	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	209880053	.	G	A	2775.77	.	AC=2;AF=1.00;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	209950681	rs649275	T	C	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.15;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	209950760	rs669694	C	G	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	209953706	rs11590807	C	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	209965587	rs2235375	G	C	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	209968684	rs2013162	C	A	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	209969902	rs7552506	G	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	210001543	rs12404886	A	T	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	210003402	rs599649	T	C	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	210004199	rs585627	C	G	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	210006437	rs655712	GC	AT	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	210006603	rs656566	C	T	7933.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	210008367	rs685248	C	G	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.36;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	210008374	rs41274838	C	T	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.56;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	210008673	rs686582	T	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	210012102	rs1962735	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	210015568	rs10570454	GCT	G	4688.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	210591742	rs3215542	TG	T	4014.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	210761462	rs4297293	G	C	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	210847514	rs1934615	A	T	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	210856585	rs3135473	G	T	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	210857457	rs1135317	A	G	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	210857483	rs144706702	GGA	G	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.887;QD=4.26;ReadPosRankSum=-0.100;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr1	211280724	rs199641326	TAA	T,TA	4563.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.145;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=3.055;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.64;MQRankSum=1.875;QD=12.14;ReadPosRankSum=1.363;SOR=0.957;set=HC	GT:AD:AF:DP	1/2:51,81,244:0.22,0.65:376
chr1	211447435	.	CT	C	26	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=10;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=2;NR=0;PP=26;QD=19.0;SC=GTGCCTTTGGCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=2;TCR=1;TR=2;WE=211447443;WS=211447433;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr1	211447625	rs11580084	G	A	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	211452529	rs10708960	TA	T	187.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=14.44;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	211452678	rs3767377	G	A	2236.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.156;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.058;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.58;ReadPosRankSum=-0.549;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,90:0.99:91
chr1	211452728	rs3767378	G	A	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	211527609	rs7530570	C	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	211545442	rs10717294	CT	C	58.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.89;ReadPosRankSum=0.140;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	211570229	rs370441907	G	A	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	211842719	.	A	C	546.77	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:80,32:0.29:112
chr1	212236157	rs4951436	G	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	212240063	rs3738449	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	212241848	rs2248191	T	C	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	212251103	rs6658972	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	212251367	rs5780675	GT	G	1137.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	212273639	rs3135474	C	T	8190.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	212274413	rs6540718	A	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=26.58;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	212530192	rs792439	T	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	212560327	rs792449	A	G	10993.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr1	212617860	.	CGTGTGT	C	732.73	.	AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;QD=36.64;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	212788567	rs2229346	C	T	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	212791288	rs3839030	CGT	C	586.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=30.88;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	212791621	rs8192660	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	212798601	rs17019481	C	A	11262.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr1	212799139	rs146657378	A	G	6939.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	212799870	rs3122713	A	G	8889.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr1	212900487	rs2244935	A	G	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	212960866	rs3738800	C	T	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	212969842	.	CTT	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.08;ReadPosRankSum=1.292;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	212970375	rs1284800	A	G	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	213003428	rs12038225	T	G	31.29	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	213036924	.	C	CA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=4.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.412;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	213046236	rs1890932	G	A	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	213056819	rs2644547	A	G	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	213061362	rs2291772	T	A	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	213061460	rs2291771	T	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	213062017	rs112024320	T	TTTG	1922.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	213068192	rs2792558	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	213068233	rs12408694	C	T	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	213068404	rs17019870	T	C	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	213068436	rs17019873	A	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	213068542	rs146462077	C	CTGAT	7651.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.75;SOR=1.145;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	213124871	rs3123305	G	A	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	213139748	rs3738805	T	G	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	213140362	rs10779597	G	A	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	213140398	rs10779598	A	C	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	213146944	rs7511930	A	G	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	213173457	rs3738806	C	T	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	213178340	rs11120076	G	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	213180441	rs71147054	G	GA	873.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-1.630;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:17,64:0.79:81
chr1	213224719	rs4951476	T	C	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	213405414	rs11271079	GGCAACTGAGGAT	G	3163.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	214478459	rs6540819	G	A	5903.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.363;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=9.174;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.39;ReadPosRankSum=0.684;SOR=0.129;set=HC	GT:AD:AF:DP	1/1:3,273:0.99:276
chr1	214492286	rs1134647	G	A	8881.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr1	214503489	rs2291830	T	G	7785.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	214504604	rs2270704	T	C	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	214505640	rs35345210	A	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	214531239	rs2291831	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	214542668	rs3002311	T	C	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	214542819	rs1135352	T	C	9031.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr1	214551276	rs3013451	G	A	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	214558228	rs3013446	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	214564177	rs12748350	C	T	6182.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.237;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=2.919;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=-1.823;SOR=0.186;set=HC	GT:AD:AF:DP	1/1:2,243:0.99:245
chr1	214564191	rs12729692	A	C	8388.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.82;ReadPosRankSum=0.628;SOR=0.496;set=HC	GT:AD:AF:DP	1/1:3,335:0.99:338
chr1	214564340	rs7550799	T	C	11976.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,465:1.00:465
chr1	214566845	rs7355212	A	G	281.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	214566952	rs4655342	A	G	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	214567013	rs11322819	CG	C	3799.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	214571251	rs11580603	A	C	9160.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=-1.341;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:2,353:0.99:355
chr1	214787130	rs2070064	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	214814571	rs3795521	C	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	214820099	rs3748697	A	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	214826810	rs11303309	CT	C	3194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.808;QD=9.65;ReadPosRankSum=1.287;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:71,260:0.79:331
chr1	215256537	rs201482650	TC	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.938;QD=2.38;ReadPosRankSum=-0.224;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr1	215345263	rs3834061	GTCTCTC	G	1050.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=42.03;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	215368514	rs1556907	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	215759729	.	G	GT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.592;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr1	215793834	rs14137	G	A	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	215848587	rs2797234	T	C	11383.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,443:1.00:443
chr1	215848641	rs2797235	T	C	11621.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,450:1.00:450
chr1	215853748	rs5780842	GT	G	1798.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:45,125:0.74:170
chr1	215901492	rs2820718	C	T	4609.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	215916713	.	C	CATATAT	1496.73	.	AC=2;AF=1.00;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr1	215916750	.	G	GTATATATA	687.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.39;ReadPosRankSum=0.868;SOR=2.350;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr1	215916756	.	G	GTCTATA	540.25	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.56;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	215916758	rs377724243	G	A	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=70.86;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	215931928	rs12095085	T	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	215956304	rs7518466	A	G	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=25.59;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	215960167	rs10864198	T	G	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	215963374	rs11120629	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	216062505	rs75163086	TG	T	669.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	216107915	rs41277206	G	A	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	216172128	rs372275979	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.725;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr1	216172380	rs10864219	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	216219781	rs6657250	A	G	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	216246675	rs35944387	AG	A	2038.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	216258213	rs56222536	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	216270618	rs7540411	G	A	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	216592003	rs4253963	T	C	7090.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr1	216595306	rs10779261	C	T	8080.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	216679858	rs144848582	A	AT	576.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:3,29:0.91:32
chr1	216692669	rs945453	C	T	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	216741314	rs11572766	C	T	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr1	217915324	rs34347452	C	T	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	217947738	rs6604561	G	A	9112.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	217975289	rs55773207	C	T	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	218475533	rs2251169	C	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	218578685	.	TTTG	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.485;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:121,13:0.10:134
chr1	218578726	rs142802402	ACT	A	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=5.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-1.110;SOR=1.491;set=HC	GT:AD:AF:DP	0/1:76,15:0.16:91
chr1	218610662	rs11285412	CT	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=7.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=1.663;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr1	219366400	rs35359058	T	TG	579.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.435;QD=14.49;ReadPosRankSum=1.058;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:4,36:0.90:40
chr1	219383848	rs5781096	A	ACTTTTT	1445.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.19;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	219383867	rs940571	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	219383905	rs940570	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr1	219706327	rs2785986	A	G	2620.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.118;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=14.433;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.19;ReadPosRankSum=-0.743;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:3,110:0.97:113
chr1	219783279	rs79789352	T	A	2197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=9.299;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=-14.604;QD=4.91;ReadPosRankSum=-3.617;SOR=1.301;set=HC	GT:AD:AF:DP	0/1:314,134:0.30:448
chr1	220089352	rs2231734	A	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	220142023	rs1061248	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	220142070	rs1061242	C	T	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	220145371	rs2795315	T	G	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	220145584	rs1982986	C	T	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	220145655	rs1982984	C	T	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	220151808	rs3215088	C	CAA	971.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	220153332	rs34917248	T	TAA	2713.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.12;SOR=2.035;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	220154246	rs35193743	AT	A	1077.86	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:10,68:0.87:78
chr1	220154659	rs10595099	TAAA	T	2491.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=-2.045;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:10,119:0.92:129
chr1	220156090	rs2647462	T	C	9804.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	220156427	rs1391566	T	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	220160360	rs2647435	A	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	220160433	rs2647434	A	G	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	220162195	rs2254494	T	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	220178717	rs5781162	T	TA	2230.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	220184150	rs34170326	CA	C	1199.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.70;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	220184164	rs28570471	A	G	1534.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.43;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	220191932	rs35962858	G	GA	125.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.643;MLEAC=2;MLEAF=1.000;MQ=60.67;MQRankSum=0.632;QD=11.44;ReadPosRankSum=1.271;SOR=2.225;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr1	220192192	rs34320023	TA	T	183.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=0.877;QD=8.33;ReadPosRankSum=1.332;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	220192495	rs2245457	C	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	220197545	rs2577159	C	T	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr1	220197625	rs2230301	G	T	9122.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr1	220205943	rs2789816	G	A	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	220205980	rs2577138	A	C	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	220207017	rs2647456	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	220208154	rs2789817	C	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	220231180	rs34887640	CT	C	2219.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	220239448	rs1146773	T	C	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	220316214	.	A	T	254.77	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	220362857	rs35162828	AT	A	76.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.319;QD=6.39;ReadPosRankSum=1.196;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	220369745	.	T	TA	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.382;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-1.352;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr1	220603310	rs10553491	TGTGA	T	1213.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:22,59:0.73:81
chr1	220607685	rs1361256	G	A	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	220607891	rs1338767	A	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	220789236	rs2786599	C	T	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	220789362	rs12137627	T	A	556.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.41;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	220808921	rs10746403	T	C	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	220825523	rs3737296	A	G	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	220970028	rs2642438	A	G	12021.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:2,487:1.00:489
chr1	220978645	rs17596144	C	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	220982320	rs34579579	CA	C	557.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:8,38:0.83:46
chr1	220986516	rs12144830	C	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	221055463	rs2247213	G	A	11642.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr1	221057646	rs2738755	C	T	6584.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	221057739	rs11578466	C	G	8834.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	221058059	rs2738756	C	T	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	221507141	rs7555947	C	T	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	222734662	rs149239943	TC	T	3383.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	222737265	rs35877231	G	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	222737568	rs3008640	C	T	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	222798106	rs3008617	G	A	3847.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	222802006	rs2936053	A	G	6570.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	222802376	rs2936052	A	G	9328.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	222802926	rs3008620	C	T	8060.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	222803204	rs2936051	A	G	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	222805698	rs3008622	T	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	222817799	rs17531007	C	T	12415.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr1	222823738	rs200789891	GT	G	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr1	222825403	rs3002150	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	222825761	rs2936019	G	A	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.171;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	222833601	rs3002153	T	C	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	222838216	rs2936026	C	T	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	222860734	rs3008638	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	222889206	.	G	C	2173.77	.	AC=2;AF=1.00;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	223152868	rs1815607	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	223156382	rs2926159	C	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	223156406	.	C	CT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-1.543;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr1	223178561	rs9441941	A	C	22853.77	.	AC=2;AF=1.00;AN=2;DB;DP=904;set=Intersection	GT:AD:AF:DP	1/1:1,890:1.00:891
chr1	223283910	rs7512943	A	G	10487.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.09;ReadPosRankSum=0.704;SOR=0.288;set=HC	GT:AD:AF:DP	1/1:1,401:1.00:402
chr1	223286191	rs5744165	G	A	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	223715248	rs36108579	GT	G	3000.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=36.15;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	223716349	rs4072246	G	A	5307.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	223717379	rs61823524	A	C	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	223717484	rs34158997	G	A	7255.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	223718462	rs61823525	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	223718518	rs61823552	C	A	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	223718651	rs61823553	G	A	7326.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	223718670	rs61823554	G	A	7070.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	223722646	rs34630115	T	TA	262.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.651;QD=11.95;ReadPosRankSum=-0.863;SOR=2.187;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	223722780	rs34606532	G	A	5483.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	223799857	rs34786756	C	T	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	223799871	rs35116708	C	T	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	223810318	rs61825177	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	223813586	rs35539373	G	T	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	223814671	rs61825208	A	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	223815575	rs34187970	G	A	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	223815851	rs138483593	AG	A	3538.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr1	223816322	rs66602040	A	G	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	223816347	rs61825210	A	G	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	223830566	rs11584107	G	A	11445.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr1	223841913	rs11585533	C	A	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr1	223900408	rs25655	C	G	17449.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr1	223931648	rs1222137	T	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	223932894	rs12069561	C	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	223933061	rs17597	C	T	10060.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:3,401:0.99:404
chr1	223933079	rs17598	C	T	10250.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	223936864	rs10915715	G	A	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	223938565	rs1153968	A	C	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	223944173	rs1153957	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	223949762	rs10159015	G	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	223951841	rs751128	T	C	5967.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	223954338	rs28370152	C	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	223958272	rs16842162	G	A	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	223959452	rs12080250	G	A	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	223959796	rs1153950	G	A	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	223959994	rs28370170	G	A	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	223989712	rs12059770	G	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	223991119	rs34683843	G	T	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	224302154	rs3066024	T	TGAG	9677.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	224318151	rs3065998	T	TTTG	2521.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	224321984	rs1472167	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	224345012	rs7543762	G	A	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	224363674	rs200913375	C	CT	1521.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.742;QD=9.39;ReadPosRankSum=-0.066;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:46,116:0.72:162
chr1	224363683	rs45522536	C	T	4311.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.308;QD=26.29;ReadPosRankSum=-0.205;SOR=0.608;set=HC	GT:AD:AF:DP	1/1:16,148:0.90:164
chr1	224444628	rs10799556	C	T	16802.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr1	224444901	rs2897055	G	C	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	224468986	rs34156240	C	CGT,CGTGT	1218.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=52;set=Intersection	GT:AF:DP	1/2:0.43,0.54:37
chr1	224473917	.	G	GT	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.465;QD=2.94;ReadPosRankSum=1.727;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr1	224482216	rs2404783	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	224492381	rs7522125	C	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	224492746	rs3754090	C	T	16268.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.736;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=0.226;SOR=0.244;set=HC	GT:AD:AF:DP	1/1:1,646:1.00:647
chr1	224495852	rs7534447	C	T	7245.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	224500860	.	CAA	C	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=19.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.42;ReadPosRankSum=0.675;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	224500881	rs6684300	A	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.156;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=15.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.12;ReadPosRankSum=0.865;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	224505570	rs3066969	T	TAA	2207.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	224514275	rs4653578	G	A	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	224517842	rs2896990	C	T	7385.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	224517907	rs4146965	A	T	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	224585958	rs7522956	A	C	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	224588825	rs7518109	T	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	224600910	rs10916612	C	A	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=41.90;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	224600920	rs10916613	C	A	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=43.05;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	224606249	rs10495219	C	G	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	224621368	rs2405033	G	C	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	224918306	rs116623954	C	T	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	224918368	rs41266237	T	G	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	224922213	rs114456050	T	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	224926997	.	CTTTTTTTTT	C	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=1.301;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr1	225230608	rs2501107	C	T	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	225237850	rs2501086	A	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	225266966	rs3105559	C	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	225268343	rs3128651	A	G	8289.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	225268346	rs3128652	G	A	8289.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	225270409	rs3128655	A	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	225273248	rs3128658	G	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	225273633	rs3105565	T	A	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	225380561	rs144339803	CAAAG	C	1808.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	225439988	rs630120	T	C	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	225445652	rs670255	G	T	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	225452983	rs76767146	A	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	225460626	rs656649	T	A	1869.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	225477869	rs36116837	A	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	225488441	.	TA	T	334.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.62;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	225555512	rs11578981	C	T	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	225555602	rs12737248	T	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	225562385	rs10915816	C	T	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	225565015	rs3856154	T	C	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	225565073	rs3856155	C	T	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	225567779	rs148752558	A	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	225569241	rs950210	T	G	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	225576058	rs6679430	T	C	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	225576311	rs10753405	A	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	225577648	rs12134158	C	T	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	225601647	rs3766928	C	T	6864.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.278;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=3.842;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.00;ReadPosRankSum=1.325;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:1,263:1.00:264
chr1	225603103	rs6702433	C	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	225607144	rs2230419	C	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	225607375	.	G	GA	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.266;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:90,22:0.20:112
chr1	225609884	rs1056608	A	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	225611661	rs1056607	C	T	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	225685621	rs145776060	TAAG	T	1223.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	225707271	.	GA	G	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.574;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:77,37:0.32:114
chr1	226027067	rs35708670	G	GGTGT	877.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.746;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=6.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.41;ReadPosRankSum=-0.309;SOR=2.391;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr1	226036309	rs360063	A	G	11144.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr1	226044489	rs60955535	G	GC	1753.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	226044766	rs9919303	G	A	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	226053805	rs7515156	G	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	226054333	rs45492299	G	A	7313.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	226054681	rs360085	T	A	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	226054714	rs2292563	G	A	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	226055595	rs2292564	G	A	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	226061868	.	GAC	G	48	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=48;QD=28.5;SC=CCATTCCAGGGACACACACAC;SbPval=1.0;Source=Platypus;TC=16;TCF=10;TCR=6;TR=2;WE=226061877;WS=226061858;set=Platypus	GT:AD:AF:DP	0/1:14,2:0.12:16
chr1	226125543	rs60825997	G	GA	2081.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	226180813	rs151278173	TTTC	T	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.376;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	226252232	rs2036870	C	T	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	226252324	.	A	G	166.80	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	226253316	rs1849032	G	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	226334578	rs1219666	G	A	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	226352498	rs2306120	T	G	9202.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:1,351:1.00:352
chr1	226353521	rs2306121	T	A	10192.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr1	226411317	rs10915962	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	226420722	rs2306119	A	G	229.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	226438449	rs6678137	T	C	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	226474132	rs10799347	G	A	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	226485327	rs11390947	A	AT	1189.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	226549498	rs2271347	G	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	226550924	rs747657	G	C	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	226553485	rs118165556	A	C	866.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	226553486	rs146042055	C	A	911.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.59;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	226553490	rs34917861	C	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	226553494	rs11378196	C	CA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=1.490;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr1	226556094	rs1805400	T	C	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	226566726	rs907190	A	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	226570840	rs1805415	T	C	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	226923146	rs11337528	GT	G	1432.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	226923264	rs708775	G	A	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	226923505	rs708776	G	T	11181.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	226923938	rs6667260	A	C	9648.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	226924875	rs147889095	ACTGCCGCTG	A	7678.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	227069677	rs11405	T	C	9780.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=0.611;SOR=0.301;set=HC	GT:AD:AF:DP	1/1:1,387:1.00:388
chr1	227071377	rs1295644	T	C	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	227073410	rs2236910	G	C	10702.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr1	227078955	rs2802267	T	C	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	227081622	rs10753428	A	G	6330.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	227085462	rs1800672	T	C	16282.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr1	227085646	rs1800673	C	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	227170298	rs2297412	A	G	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	227170543	rs2297413	C	G	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr1	227171584	rs3215919	GT	G	537.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	227171737	rs1574184	G	T	7405.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.82;ReadPosRankSum=0.803;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:8,211:0.96:219
chr1	227171739	rs1574185	G	T	9624.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=1.505;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	227172290	rs12593	C	T	20145.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:1,793:1.00:794
chr1	227172903	rs2297415	G	A	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	227172935	rs2297416	C	G	6229.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	227174145	rs7552783	T	C	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	227174210	rs3738725	T	C	28201.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.273;ClippingRankSum=0.000;DB;DP=1135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=0.146;SOR=0.409;set=HC	GT:AD:AF:DP	1/1:1,1109:1.00:1110
chr1	227181923	rs3795451	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	227182033	rs2802269	G	A	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	227182575	rs1045247	A	G	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	227182754	rs2297419	G	A	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	227192579	rs2297418	A	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	227192743	rs148881297	G	A	11303.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr1	227204557	rs17600747	T	C	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	227210820	rs11580229	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	227210888	rs11578479	A	T	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	227213968	rs7535826	G	T	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	227216662	rs1929861	T	C	9649.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	227216775	rs1929860	C	T	11968.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr1	227218069	rs5781458	C	CAT	573.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	227219314	rs1319103	A	G	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	227221123	rs11582863	G	A	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	227222515	rs113874316	G	GACAA	9789.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=44.30;SOR=1.184;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	227239562	rs34111989	G	C	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	227288655	rs2104863	G	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	227330759	rs12139502	A	G	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	227381326	rs6696485	C	T	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	227381373	rs3768436	G	T	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	227387143	rs3768435	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	227387361	rs3768434	A	G	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	227834228	rs79145640	AT	A	9142.73	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:45,423:0.90:468
chr1	227920061	rs1060295	T	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	227920103	rs3087908	G	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	227920447	rs751748	C	T	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	227922918	rs2295994	A	C	15962.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:1,608:1.00:609
chr1	227923081	rs7419238	G	A	18162.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,704:1.00:704
chr1	227935280	rs2236361	C	T	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr1	227935355	rs2236360	T	C	12744.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.349;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=0.526;SOR=0.288;set=HC	GT:AD:AF:DP	1/1:1,500:1.00:501
chr1	227935444	rs2236359	A	G	14886.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,581:1.00:581
chr1	227963491	rs754224	G	T	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	227968107	rs10799448	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	228003839	rs79840641	C	T	9980.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr1	228033197	rs9426581	A	G	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	228033333	rs16848162	T	A	6953.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	228109137	rs35718701	A	G	7501.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	228294300	rs12564763	T	C	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	228352160	rs4348717	T	C	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	228391808	rs11800309	G	T	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	228399482	rs11804508	C	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=23.67;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	228399766	rs55971985	T	C	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	228400646	rs3121192	T	C	14957.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr1	228400653	rs3121191	A	T	14471.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	228402047	rs1620111	A	G	13677.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:1,522:1.00:523
chr1	228402121	rs1771487	A	G	9881.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr1	228405118	rs5781507	G	GA	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:3,26:0.90:29
chr1	228431095	rs1771455	A	G	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	228431930	rs10916293	C	T	9391.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.66;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	228433217	rs2487384	A	G	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	228434395	rs7517088	T	C	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	228434467	rs7517108	T	C	8379.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	228437603	rs6426494	T	C	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	228438045	rs12737540	G	A	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	228444318	rs7532144	T	G	7296.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr1	228444565	rs7532342	T	A	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	228444741	rs3795780	C	T	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	228451826	rs453140	C	T	15143.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr1	228456147	rs878388	T	C	11438.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:1,444:1.00:445
chr1	228461129	rs1188724	A	G	6533.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	228461408	rs11398292	A	AG	4370.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	228463433	rs510931	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	228464248	rs1188721	T	G	8288.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	228464276	rs1188722	T	C	9445.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.74;ReadPosRankSum=0.681;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:2,365:0.99:367
chr1	228464842	rs936885	C	G	13420.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr1	228465370	rs867599	T	G	9778.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr1	228467901	.	G	A	7217.77	.	AC=2;AF=1.00;AN=2;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	228468458	rs1188697	G	A	3676.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.153;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.88;ReadPosRankSum=-0.344;SOR=0.262;set=HC	GT:AD:AF:DP	1/1:1,153:0.99:154
chr1	228470995	rs1150906	G	T	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	228475848	rs437129	G	A	15256.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr1	228480282	rs1150908	A	G	14742.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr1	228482010	rs449133	C	T	18101.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,672:1.00:672
chr1	228482285	rs1150909	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	228492044	rs1150910	G	A	15394.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr1	228494382	rs1150911	T	G	7704.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr1	228494790	rs435776	G	A	9736.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr1	228495696	rs419173	T	C	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	228497053	rs379620	A	G	6906.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	228503677	rs1150912	A	G	13529.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.169;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.48;ReadPosRankSum=1.707;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,530:1.00:531
chr1	228504472	rs1188732	T	C	7094.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	228504670	rs11810627	C	T	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	228504701	rs111792077	G	GCTCC	2006.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	228505668	rs1188729	C	G	8992.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	228505699	rs1188728	T	C	11848.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:1,447:1.00:448
chr1	228509427	rs373610	A	G	14167.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr1	228522029	rs57891072	TA	T	754.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	228523005	rs60787858	T	TG	587.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.39;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	228523412	rs12061733	G	A	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	228523442	rs1684868	T	C	9369.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.71;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	228523447	rs10799473	T	C	9563.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.08;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	228523618	rs1757160	G	A	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	228525898	rs1188717	C	G	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	228526665	rs505629	T	C	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	228526742	.	CCA	C	788.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;QD=29.21;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	228528563	rs1188710	C	G	10249.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr1	228529129	rs3795810	C	A	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr1	228529429	rs141828109	A	AGACGGCTCAGCCAGCCTGTGGCATGG	1149.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	228538470	rs12031395	C	G	9942.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr1	228538968	rs3795811	C	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	228539300	rs3795812	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	228543800	rs3795814	C	T	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	228547256	rs12027720	G	A	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	228548197	rs10158354	G	A	7220.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,273:1.00:274
chr1	228550426	rs35155240	C	T	9150.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	228552571	rs541959	T	C	21878.77	.	AC=2;AF=1.00;AN=2;DB;DP=873;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,844:1.00:844
chr1	228553651	rs572442	T	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	228553675	rs573128	C	T	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	228556403	rs35711644	C	T	14723.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,566:1.00:566
chr1	228558892	rs35186354	C	T	29551.77	.	AC=2;AF=1.00;AN=2;DB;DP=1125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,1119:1.00:1119
chr1	228559994	rs500049	C	T	24251.77	.	AC=2;AF=1.00;AN=2;DB;DP=947;set=Intersection	GT:AD:AF:DP	1/1:0,939:1.00:939
chr1	228560139	rs498382	A	G	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	228560700	rs512253	T	C	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr1	228564884	rs56174824	G	A	23215.77	.	AC=2;AF=1.00;AN=2;DB;DP=888;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,874:1.00:874
chr1	228565445	rs3738687	C	A	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	228588654	rs35670307	G	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.74;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	228588680	rs11555960	A	C	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	228597130	rs61827276	G	A	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	228601638	rs472594	T	C	13815.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,531:1.00:531
chr1	228602660	rs503203	G	C	9884.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr1	228646356	.	CGT	C	108	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=1;MGOF=13;MMLQ=21;MQ=58.9;NF=0;NR=7;PP=108;QD=15.8571428571;SC=GAATCTGAGCCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=30;TCF=0;TCR=30;TR=7;WE=228646365;WS=228646346;set=Platypus	GT:AD:AF:DP	1/0:23,7:0.23:30
chr1	228785805	rs10916348	C	T	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	229385669	rs71561726	TTC	T	5269.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.60;SOR=1.497;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	229568231	rs527621	T	G	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	229611306	.	A	T	2417.77	.	AC=2;AF=1.00;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	229663064	rs113712941	GAGGAA	G	5250.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	229730452	rs2295625	G	A	14135.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr1	229738170	rs3753886	T	G	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	229738236	rs4925500	G	A	8565.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr1	229746019	rs2273573	C	T	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	229750343	rs2273574	T	G	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	229768297	rs1473719	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	229772693	rs3811473	T	G	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	229781532	rs881694	T	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	229781744	rs2274994	T	C	7885.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	229783236	rs6587349	T	C	6812.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=1.041;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	229783240	rs2274995	T	C	6994.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	230371883	rs3811488	G	A	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	230386341	rs2273966	T	A	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	230410162	rs12091838	C	T	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	230410374	rs17710666	G	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	230415025	rs6698963	A	G	9031.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr1	230415810	rs72647711	G	A	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	230415846	rs72647712	G	C	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	230778491	rs4846864	G	C	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	230795177	rs1359866	T	C	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	230796326	rs3736983	A	G	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	230798864	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=2.113;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	230819295	rs5781596	ATTC	A	6906.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.56;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	230819479	rs5781597	G	GT,GTT	645.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=2.249;SOR=1.075;set=HC	GT:AD:AF:DP	1/2:3,24,11:0.63,0.29:38
chr1	230829139	rs1051038	A	G	5736.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	230841559	rs3827749	G	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	230841687	rs7080	T	C	11450.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.591;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=1.159;SOR=0.491;set=HC	GT:AD:AF:DP	1/1:1,442:1.00:443
chr1	230845794	rs699	A	G	16731.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,657:1.00:657
chr1	230883484	rs6690251	T	C	8025.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	230883499	rs6690254	T	C	6367.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	230914706	rs1933630	C	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	230914729	rs1933631	A	C	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	230916260	rs28359687	C	T	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr1	230923151	rs2297830	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	230923187	rs12731671	C	G	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	230923313	rs12731961	C	T	6625.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	230928512	rs7522057	C	G	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	230975454	rs1202550	A	G	148.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	231003851	rs11122619	G	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	231047143	rs6699285	A	G	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	231047310	rs10580953	TAC	T	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	231057310	rs2275334	C	T	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	231059784	rs3748774	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	231060736	rs3748775	T	C	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	231064578	rs5781609	T	TCTC	639.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	231064611	rs950029	G	A	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	231067236	rs11122624	C	T	7312.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	231067318	rs11122625	G	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.12;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	231069652	rs1890351	A	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	231081269	rs141457550	T	TA	1516.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	231081304	rs6673085	T	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	231094050	.	G	GA	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=1.050;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:17,28:0.62:45
chr1	231161817	rs35151430	T	TA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.443;QD=3.91;ReadPosRankSum=1.008;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr1	231175615	rs61826695	C	T	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	231363000	rs16854012	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	231480507	rs1009227	A	G	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	231486989	rs2474633	A	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	231487017	rs2474634	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	231488524	rs2437150	C	T	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	231502230	.	T	TA	791.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=1.047;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:24,60:0.71:84
chr1	231502245	rs1435167	T	A	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	231502310	rs1435166	T	C	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	231506557	rs2256908	G	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	231664607	rs41303127	C	T	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	231936016	rs2759354	A	G	8343.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	231954872	rs11588937	C	T	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	231956086	rs11122343	A	T	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	232002392	rs3082	A	G	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	232534776	rs586719	C	T	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	232535030	rs629939	C	T	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	232538234	rs17177525	T	G	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	232551416	rs12569188	G	A	9836.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr1	232564096	rs34949132	CT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.069;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr1	232568293	rs1547741	A	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	232577281	rs573140	T	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	232650750	rs3795366	A	G	12692.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr1	232650867	rs4649383	C	T	22363.77	.	AC=2;AF=1.00;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	1/1:1,870:1.00:871
chr1	232941153	rs12409898	C	T	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr1	233137225	rs140788891	CATAA	C	1264.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.80;ReadPosRankSum=-0.616;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr1	233296891	rs2296515	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	233296908	rs2296516	T	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	233395214	rs2139998	T	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	233397267	rs10489808	G	A	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	233397752	rs6701073	T	C	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	233398670	rs12132556	C	A	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	233398713	rs1033325	C	T	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	233398927	rs1033324	C	G	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	233398931	rs5781734	G	GC	2786.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	233398993	rs1033323	C	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	233512362	rs10489691	A	G	7797.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	233514934	rs3795375	G	A	6631.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	233514975	rs3795374	G	T	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	233515071	rs963982	C	T	13874.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,529:1.00:529
chr1	233515102	rs963981	T	G	18157.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:1,711:1.00:712
chr1	233749855	rs2795294	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	233759918	rs701213	T	C	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	233759939	rs701214	C	T	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	233785786	rs4649241	A	C	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	234040742	rs12136133	A	C	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	234041422	rs57010808	G	C	25249.77	.	AC=2;AF=1.00;AN=2;DB;DP=970;set=Intersection	GT:AD:AF:DP	1/1:0,946:1.00:946
chr1	234442376	rs674385	G	A	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	234444761	rs11359233	TA	T	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=2.458;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	234509259	rs10910420	G	C	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	234510262	rs4300255	A	G	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	234519385	rs10797539	T	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	234519452	rs58896934	C	CT	667.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	234527575	rs3862040	C	T	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	234528006	rs3754317	A	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	234529552	rs2175594	C	T	7235.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	234529570	rs2175593	G	A	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	234541622	rs2271444	G	T	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr1	234546245	rs1141264	C	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	234582457	rs270527	C	T	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	234582461	rs2203167	G	A	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	234582651	rs4920246	T	C	8363.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	234584231	rs2102596	C	T	8927.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	234584445	rs7527374	C	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	234594947	rs12402937	T	C	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	234606799	rs6694349	C	T	127.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	234607055	rs10713847	TG	T	2577.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	234607086	rs6687548	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	234607104	rs6697027	C	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	234608725	rs34245359	A	ATT	232.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.27;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	234614390	rs117698521	G	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	234744413	rs4636	C	A	4854.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	234745009	rs7545855	A	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.582;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	234953834	rs200007946	A	C	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.71;QD=22.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	234953875	rs138215498	C	CA	626.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.92;QD=29.84;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	235301496	rs367780945	CA	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.055;QD=1.11;ReadPosRankSum=-2.408;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:83,26:0.24:109
chr1	235311767	rs140896073	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	235543262	rs11425048	C	CA	406.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.364;QD=11.62;ReadPosRankSum=-1.668;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:7,28:0.80:35
chr1	235543476	rs145735844	TTGTGTGTGTGTGTGTG	T,TTG	3437.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=37.78;ReadPosRankSum=1.086;SOR=1.708;set=HC	GT:AD:AF:DP	1/2:1,28,62:0.31,0.68:91
chr1	235594182	rs2291687	A	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	235594250	rs2291688	A	G	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	235598973	rs2055127	C	T	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	235601958	rs3819974	G	T	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	235611535	.	C	CA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=3.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.806;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr1	235612116	rs373300985	G	A	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	235715523	rs14326	A	G	5598.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	235715556	rs423026	C	G	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	235715601	rs400948	A	G	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	235747005	rs2774335	C	T	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	235747154	rs2774336	A	G	7499.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr1	235826382	rs36014994	TA	T	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.922;QD=8.49;ReadPosRankSum=-0.352;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr1	235827443	rs3819013	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	235827641	rs12092604	C	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	235856901	rs3754232	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	235860340	rs7541057	C	T	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	235887276	rs6667717	G	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	235896726	rs6429275	C	T	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	235910392	rs6676149	A	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	235910542	rs3754234	C	T	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	235918688	rs149138177	CAAAAG	C	3639.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	235940450	rs2273584	C	T	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	235945186	rs72763416	G	A	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	235945294	rs6696123	T	C	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	235955150	rs11583387	G	A	10791.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	235963454	rs72763422	C	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	235971763	rs3768066	A	G	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	235972435	rs3820553	T	C	13542.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr1	235972867	rs1063128	T	C	10705.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr1	236305885	rs7522547	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	236393654	rs2812471	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	236395979	rs11388266	C	CT	88.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	236413230	rs2477599	T	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	236433135	rs3834089	AT	A	1616.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	236444879	rs11281666	G	GGCCCGGCCCT	1121.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=62.32;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	236557771	rs966365	G	A	6579.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	236557928	rs966364	G	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	236572389	rs659901	G	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	236572475	rs669710	A	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	236577761	rs625444	TC	CT	106.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	236590497	rs1759388	C	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	236590563	rs1778861	C	T	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	236590629	rs636378	C	T	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	236590659	rs636048	G	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	236590816	rs635487	T	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	236700673	rs62670060	GAGC	G	572.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=40.91;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	236700807	rs1126407	T	A	7474.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	236700823	rs1041934	T	C	9183.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr1	236700857	rs1041935	C	T	10632.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr1	236700982	rs2737706	T	C	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	236702153	rs2244808	G	A	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	236702209	rs1041936	CA	TG	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	236702447	rs12744425	T	G	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.81;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	236702450	rs12744427	T	C	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.86;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	236702475	rs11807205	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	236702497	rs111502141	AGTTT	A	375.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	236702517	rs11807542	T	C	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	236703700	rs2244659	A	G	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	236703734	rs2243405	T	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	236703767	rs2758994	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	236703832	rs34818366	CG	C	2990.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	236704888	.	A	AACAGGT	187.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	236704891	.	TAAA	T	143	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	236704897	.	ATT	A	143	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	236706352	rs2758174	A	C	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	236706371	rs2758175	A	G	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	236706425	rs2244267	G	A	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	236706671	rs2243530	T	A	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	236706780	rs2243527	C	T	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	236706862	rs2243525	G	C	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	236707007	rs2799410	C	T	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	236707036	rs2794786	A	T	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.34;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	236707045	rs2799409	C	T	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=2.356;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	236708022	rs5781896	GT	G	762.84	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:6,48:0.89:54
chr1	236708224	rs2244063	A	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	236708316	rs2758181	A	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	236708357	rs60495052	C	CCCTT	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	236711297	rs2254823	A	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	236711323	rs15701	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	236711586	rs1160	G	A	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	236714064	rs6989	A	C	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	236714292	rs373763274	T	TA,TAA	2561.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.318;QD=18.43;ReadPosRankSum=1.245;SOR=0.864;set=HC	GT:AD:AF:DP	1/2:13,39,87:0.28,0.63:139
chr1	236714335	rs2254487	C	T	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	236715442	.	A	ATTT	4235.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=1.354;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	236715443	.	G	A	4245.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	236715445	.	G	T	4201.77	.	AC=2;AF=1.00;AN=2;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	236716741	rs1475132	G	A	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	236716959	rs2275685	C	T	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	236717104	rs2275686	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	236717926	rs2275687	T	C	7147.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.742;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=-0.964;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:1,286:1.00:287
chr1	236718524	rs6668848	G	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	236718561	rs6668926	G	A	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	236718620	rs1126627	T	C	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	236719135	rs1885532	T	C	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	236719193	rs1885533	A	G	11729.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,454:1.00:454
chr1	236719259	rs1885534	G	A	12448.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr1	236720761	rs2799404	T	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	236721610	rs2275688	G	A	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	236721660	rs2275689	T	C	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr1	236721731	rs819431	T	C	10237.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr1	236722182	rs819432	A	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	236722489	rs2146122	C	T	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	236723177	rs10754576	GC	AA	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	236724504	rs1077439	G	A	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	236724605	rs1077438	G	T	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	236724715	rs1077437	T	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	236724766	rs1077436	C	T	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	236729867	rs2758172	C	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	236732198	rs12135604	C	A	373.10	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=0.066;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:4,24:0.86:28
chr1	236732199	.	A	AC	312.84	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=5.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=1.941;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr1	236735939	rs2853602	T	C	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	236739416	rs2115740	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	236740039	rs6658793	G	C	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	236744424	rs35257076	A	AT	548.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	236744712	rs4518892	C	A	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	236744720	.	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.743;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr1	236746275	rs2794769	G	C	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	236746443	rs2794768	C	T	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	236748505	rs1006456	T	C	20059.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,781:1.00:781
chr1	236748630	rs1006455	C	T	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	236748636	rs1006454	G	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.58;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	236749022	rs10925166	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.70;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	236749026	rs10925167	T	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.05;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	236749348	rs2794764	C	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	236749451	rs3831993	TA	T	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	236749649	rs2794763	T	C	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	236749817	rs2799420	C	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	236751519	rs34200005	GA	G	542.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;MQ=60.63;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	236755170	rs2794760	G	T	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	236755427	rs2794759	A	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	236755690	rs2794758	G	A	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	236755814	rs2794757	G	A	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	236755837	rs2564739	C	T	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.06;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	236755937	rs67239913	TA	T	250.52	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr1	236757200	rs2564738	A	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	236757229	rs2794754	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	236758887	rs2794751	T	C	11001.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr1	236759060	rs2794750	T	C	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	236767072	rs1529540	A	G	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	236767176	rs1529541	C	G	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.61;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	236767178	rs375752396	AG	A	1128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.667;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.207;QD=9.49;ReadPosRankSum=1.354;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:38,81:0.68:119
chr1	236767330	rs10802551	A	G	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	236881403	rs2275399	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	236882110	rs1341865	G	A	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	236882303	rs1341864	T	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	236883240	rs1768053	T	C	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	236883421	rs1341863	C	T	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	236883564	rs1341862	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	236890781	rs1768056	A	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	236897633	rs707203	A	G	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	236899899	rs11355106	TC	T	5796.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	236900018	rs7542508	G	A	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	236900598	rs7521191	C	T	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	236902560	rs7527525	C	T	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=26.37;SOR=1.466;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	236902594	rs2288601	C	G	13154.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr1	236902865	rs2288602	A	C	8217.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	236902955	rs7544174	T	C	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	236907847	rs3738543	G	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	236910863	rs10802557	T	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	236911137	rs10925211	A	G	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	236912597	rs2297955	A	G	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	236923197	rs12730862	C	T	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	236924506	rs2282366	A	G	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	236972186	rs12759827	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	237024397	.	CTT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=-0.566;QD=2.72;ReadPosRankSum=0.737;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	237038008	rs74710274	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.696;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr1	237038161	rs1770449	T	C	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	237060945	rs67705775	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-1.419;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr1	237532763	rs17681893	T	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	237619875	rs60132900	AT	A	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-2.296;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:179,60:0.25:239
chr1	237656185	rs139196633	A	AAGGGAGGG	1563.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.95;QD=48.87;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	237670140	rs2618702	A	G	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	237675029	rs186181155	G	A	8010.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	237675150	rs57409517	A	AG	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=1.549;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr1	237711644	rs2618661	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	237711797	rs2253273	A	G	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	237730124	rs2805390	A	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	237730169	rs2779401	C	T	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	237732395	rs2805396	G	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	237753074	rs11331089	AT	A	2455.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.237;QD=18.46;ReadPosRankSum=1.000;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:5,128:0.96:133
chr1	237754340	rs1332777	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	237755188	rs2618713	C	T	6400.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	237755203	rs2779430	T	C	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	237757027	rs1478915	G	A	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	237765470	rs791541	A	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	237794603	rs1759123	A	G	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	237801770	rs707189	T	C	4855.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	237802559	rs530109	T	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	237824332	rs471647	G	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	237831103	rs477245	C	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	237841390	rs34967813	A	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	237850666	rs10679267	C	CT	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.773;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.549;QD=5.65;ReadPosRankSum=0.414;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr1	237862164	rs1521745	G	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	237862436	rs1521744	T	C	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	237863439	rs12754190	G	A	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	237863718	rs2797436	T	G	6847.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	237865203	rs939699	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	237872714	rs35261418	GT	G	1586.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.439;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.377;QD=17.25;ReadPosRankSum=0.403;SOR=0.891;set=HC	GT:AD:AF:DP	1/1:3,89:0.97:92
chr1	237881770	rs2797441	C	T	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	237890437	rs2685301	C	T	9495.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	237893674	rs2797445	C	T	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	237923053	rs2253831	C	T	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	237946964	rs790889	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	237951451	rs2256242	A	G	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	237955649	rs141054929	CTG	C	465.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.071;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.51;ReadPosRankSum=0.994;SOR=0.442;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr1	237965133	.	AT	A	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.893;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:218,71:0.25:289
chr1	237993724	rs2275692	C	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	238048325	rs2298100	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	240070603	rs3738435	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	240255568	rs140531536	GGGC	G	6849.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	240286805	.	CA	C	22	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9999;HP=18;HapScore=2;MGOF=6;MMLQ=26;MQ=55.92;NF=0;NR=2;PP=22;QD=12.5;SC=TGTTTGTACACAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=240286813;WS=240286795;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr1	240371634	.	C	T	674	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=4;HapScore=1;MGOF=36;MMLQ=26;MQ=55.69;NF=29;NR=3;PP=674;QD=22.1491003921;SC=CGGGCATACCCCCTCCGCCCC;SbPval=0.93;Source=Platypus;TC=38;TCF=31;TCR=7;TR=32;WE=240371642;WS=240371625;set=Platypus	GT:AD:AF:DP	0/1:6,32:0.84:38
chr1	240371634	.	C	CCCTCCGCCCCCTCTACCTGGAGTGGGAATACCT	1733.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.79;QD=247.68;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	240421383	rs10926181	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	240601269	rs2356386	A	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.421;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	240635491	rs2210861	G	C	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	240637571	rs882869	A	G	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	240643167	rs11578184	A	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	240643184	rs9442211	C	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	240643435	rs12748248	A	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	240975213	rs2275742	T	C	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	240975435	rs2275744	C	T	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	240977964	rs12744536	G	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	240979803	rs3738068	G	A	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	241100122	rs261857	G	T	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	241146322	rs7520707	A	G	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.02;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	241519098	rs4659599	T	A	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	241669256	rs145209119	C	T	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.273;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	241847018	rs10802979	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	241886430	rs12748037	C	G	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	241913062	rs11432682	C	CT	1129.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	241920499	rs67278585	TGTAG	T	1943.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	241933876	rs11809239	A	G	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	241946766	rs953597	A	C	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	241954005	rs35435449	TA	T	1285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.089;QD=8.93;ReadPosRankSum=0.360;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:28,116:0.81:144
chr1	241964559	rs4658661	C	T	8897.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr1	242016590	rs4149867	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	242042301	rs1047840	G	A	12606.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr1	242042545	rs1776148	A	G	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	242042690	rs1418760	A	G	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	242045275	rs1635498	C	T	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	242048514	rs10666416	G	GTAAATAAA	546.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=42.06;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	242048674	rs9350	C	T	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	242052685	rs4150020	C	G	179.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	242053030	rs4150021	AT	A	775.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	242511556	rs112478548	AACAAAG	A	6018.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	242612420	rs2654871	G	A	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	242687390	rs2810008	G	A	7135.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	243327520	rs1815604	A	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.63;QD=27.72;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	243362331	rs2789172	C	T	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.08;QD=28.68;SOR=2.640;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	243388370	rs10926973	A	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	243433654	rs2275154	A	G	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	243493907	rs2275155	A	T	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	243507680	rs3215963	C	CA	1356.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	243736210	rs66631932	CT	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=2.276;SOR=1.450;set=HC	GT:AD:AF:DP	0/1:58,34:0.37:92
chr1	244528127	rs9782996	T	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	244579519	rs3123696	T	C	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	244653556	rs3006021	A	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	244773784	rs6698173	T	C	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	244773803	rs6698180	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	244803205	rs60280231	CTT	C	3574.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;QD=22.20;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:21,140:0.87:161
chr1	244852819	rs35130686	C	CT	211.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.25;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	245133539	rs7542813	A	G	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:3,280:0.99:283
chr1	245179011	rs201488109	CA	C	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.186;QD=1.45;ReadPosRankSum=-1.425;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:207,81:0.28:288
chr1	245222634	rs694793	C	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	245222839	rs579269	G	T	2516.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.613;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=6.033;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.47;ReadPosRankSum=-0.166;SOR=0.077;set=HC	GT:AD:AF:DP	1/1:3,109:0.97:112
chr1	245245378	rs10927386	T	C	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.42;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	245245402	rs10927387	C	T	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	245318688	rs12409851	C	T	9324.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	245851304	rs6701084	A	G	17791.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr1	246027034	rs2153404	G	C	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	246091457	rs6669768	T	C	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	246091515	rs2275318	C	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	246091531	rs6669866	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	246093465	rs11295264	GA	G	2399.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=1.817;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:82,190:0.70:272
chr1	246110895	rs10924400	G	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	246489706	rs57404221	GA	G	4616.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:14,254:0.95:268
chr1	246489769	rs367922653	TA	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.477;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:87,23:0.21:110
chr1	246490438	rs3737245	T	C	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	246490442	rs3737246	A	G	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=1.237;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	246490452	rs3737247	G	A	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.51;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	246498866	rs10159376	A	C	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	246670281	rs6671418	G	C	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	246670297	rs201911211	CCCT	C	517.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=2.022;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:133,38:0.22:171
chr1	246670298	rs150603688	CCT	C	2548.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:59,112:0.65:171
chr1	246670333	rs6426303	A	G	8738.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	246670481	rs7520453	C	G	12937.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,500:1.00:500
chr1	246704563	rs764243	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	246707816	rs3124119	T	C	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	246707858	rs3129568	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	246711789	rs3124131	T	A	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	246712033	rs1890160	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	246714728	rs9426201	G	A	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	246720174	rs3120710	A	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	246720798	rs3124071	G	A	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	246727558	rs3120713	G	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	246755124	rs6702823	T	C	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	246903654	rs3007322	G	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	246929483	rs12144408	A	G	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	246939610	rs3838991	A	ATATT	11261.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	246939856	rs3795465	G	A	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	246939943	rs6685364	T	C	5298.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	246940179	rs3795464	G	A	7285.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	246940182	rs3795463	C	A	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	246940442	rs3795462	T	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	247021266	rs111386980	C	CTTCT	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	247031193	.	AC	A	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.218;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	247067139	rs34620854	CA	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.332;QD=1.74;ReadPosRankSum=-1.083;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr1	247150740	rs3749427	T	C	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	247151557	rs2642992	A	G	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.19;SOR=1.970;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	247162658	rs2642973	C	T	17428.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,681:1.00:681
chr1	247419509	rs1778540	T	C	8112.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.149;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	247419664	rs1778541	C	T	14430.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr1	247473889	rs61838684	C	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	247485932	rs10924984	A	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	247486213	rs41268345	G	A	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	247486421	rs6692645	G	C	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	247582072	.	C	T	615.77	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	247582446	.	TTA	T	161	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=2;HapScore=2;MGOF=12;MMLQ=26;MQ=58.78;NF=0;NR=5;PP=161;QD=33.4;SC=TTTTCCATCTTTATATATATA;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=5;WE=247582455;WS=247582436;set=Platypus	GT:AD:AF:DP	1/1:8,5:0.38:13
chr1	247582466	rs4998423	A	T	117.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;MQRankSum=-0.000;QD=10.72;ReadPosRankSum=1.242;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:3,8:0.73:11
chr1	247587477	rs3806268	G	A	12325.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr1	247587531	rs4925543	A	G	15989.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr1	247588053	rs34298354	C	T	20211.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:0,783:1.00:783
chr1	247597329	rs12124866	C	T	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	247597365	rs10925022	G	A	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	247597656	rs3835304	TG	T	2269.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	247599232	rs10754557	G	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	247614617	rs4925663	C	T	8347.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	247614693	rs6695302	C	T	14175.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,558:1.00:558
chr1	247615252	rs12028142	G	A	10159.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	247615261	rs35305980	GA	G	13201.73	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	247695427	rs34220133	C	G	13041.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr1	247695612	rs6657127	G	A	9883.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:1,374:1.00:375
chr1	247695756	rs6697472	T	C	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	247712303	rs41315846	T	C	323.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.977;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=4.472;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.13;ReadPosRankSum=-1.249;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr1	247752019	rs1151687	G	C	9576.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	247752161	rs10925085	T	C	9351.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	247752367	rs869111	A	G	7358.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	247835352	rs1151641	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	247835674	rs28446289	G	A	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,304:0.99:306
chr1	247835908	rs28556931	T	A	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	247836008	rs28555391	G	A	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	247836207	rs28711149	T	A	8738.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	247886949	rs36075193	T	C	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	247921100	rs1552812	T	G	6120.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	247921352	rs1552813	C	T	6564.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	247921717	rs10888359	C	A	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	247921789	rs147960387	A	AGT	225.74	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	247978087	rs10888248	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	247978135	rs12734733	C	A	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	247978319	rs6695283	A	G	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	247978541	rs35979231	AAGG	A	14438.73	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:2,326:0.99:328
chr1	247978996	rs10888249	A	G	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	248004614	rs6667389	G	A	9006.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	248004687	rs10888255	C	G	15157.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr1	248004775	rs10888256	C	T	15637.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr1	248004848	rs4607924	G	C	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	248004877	rs10888257	C	T	11625.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	248004884	rs1339845	T	C	11703.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	248005213	rs7522811	G	C	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	248023966	rs3737277	C	T	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	248024073	rs3737276	A	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	248039713	rs3811445	A	G	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	248058755	rs1337876	A	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	248058797	rs1856248	T	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	248058845	rs4500353	A	C	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	248058879	rs6587387	A	T	8384.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	248059423	rs10888267	C	T	12357.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	248059456	rs12135078	G	A	10463.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	248059476	rs12139390	A	C	9541.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr1	248059703	rs11204545	T	A	14703.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	248059712	rs11204546	T	C	14389.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	248059856	rs10888268	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	248084434	rs11204563	G	A	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	248084464	rs11204564	T	C	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:28,115:0.80:143
chr1	248085108	rs4625315	C	T	499.03	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr1	248085341	rs4925773	T	A	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	248112627	rs4925787	T	C	16544.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:1,646:1.00:647
chr1	248112745	rs4925788	G	T	8844.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	248112762	rs4925789	TG	CA	15944.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=49.97;QD=46.90;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	248112771	rs4925791	C	T	16113.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.75;MQRankSum=-1.083;QD=42.86;ReadPosRankSum=1.792;SOR=0.225;set=HC	GT:AD:AF:DP	1/1:1,375:1.00:376
chr1	248112809	rs4925583	A	G	14059.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr1	248112836	rs4925792	A	G	16265.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:1,623:1.00:624
chr1	248129240	rs4478844	G	A	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	248224569	rs75239130	G	T	2701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.116;ClippingRankSum=0.000;DB;DP=1294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-20.737;QD=2.10;ReadPosRankSum=0.096;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:1021,267:0.21:1288
chr1	248224595	rs76336532	C	T	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.497;ClippingRankSum=0.000;DB;DP=1292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-25.731;QD=1.75;ReadPosRankSum=-9.660;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:1042,247:0.19:1289
chr1	248343543	rs9435919	C	T	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;MQ=56.07;set=Intersection	GT:AD:AF:DP	1/1:2,200:0.99:202
chr1	248366702	rs4916112	G	A	20565.77	.	AC=2;AF=1.00;AN=2;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.93;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,793:1.00:793
chr1	248367415	rs4916082	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	248402758	rs6666148	C	T	8111.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	248457979	rs6667171	C	A	16739.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr1	248458676	rs6678138	T	C	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	248458689	rs6674940	A	G	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	248458717	rs12745228	C	G	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	248458760	rs12135684	C	A	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.80;QD=25.00;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	248486895	rs4244184	G	T	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	248486913	rs4244185	A	G	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	248487638	rs7555310	A	G	5771.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	248487768	rs7555424	A	G	8693.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	248512064	rs28372410	T	G	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	248512094	rs28728105	C	T	8266.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	248512637	rs2039824	C	T	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	248512749	rs28377739	G	A	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	248512767	rs28545014	G	T	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	248513023	rs28607995	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	248513088	rs28481429	G	C	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	248525638	rs34079073	CA	C	22897.73	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr1	248550976	rs6587467	T	G	12279.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:1,485:1.00:486
chr1	248569282	rs28667896	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	248569369	rs28599722	A	G	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	248570440	rs6695780	G	A	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	248604542	rs61834485	C	T	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.09;QD=26.34;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	248604559	rs150497047	T	TTC	1041.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.68;QD=43.41;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	248604614	rs201226597	A	T	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=46.08;MQRankSum=1.775;QD=9.27;ReadPosRankSum=-0.262;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:69,70:0.50:139
chr1	248604694	rs199872993	C	T	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.424;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.500;MQ=43.36;MQRankSum=-1.081;QD=14.81;ReadPosRankSum=1.372;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:37,66:0.64:103
chr1	248604765	rs144165631	T	A	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.64;QD=26.30;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	248605436	rs71642447	C	G	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.60;QD=42.19;SOR=1.449;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	248605442	rs71642448	G	T	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.17;QD=45.56;SOR=1.664;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	248617123	rs199745092	C	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=5.669;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-14.025;QD=0.92;ReadPosRankSum=-4.863;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:364,32:0.08:396
chr1	248617133	rs78191942	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=4.198;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-14.863;QD=1.68;ReadPosRankSum=-3.577;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:309,37:0.11:346
chr1	248617142	rs371574584	AG	A	690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=4.179;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-14.261;QD=2.17;ReadPosRankSum=0.203;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:281,38:0.12:319
chr1	248617150	.	T	C	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.554;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=5.338;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-14.879;QD=2.77;ReadPosRankSum=2.701;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:252,38:0.13:290
chr1	248617153	rs140089153	C	CTG	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.988;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=4.184;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-14.734;QD=2.97;ReadPosRankSum=3.208;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:244,39:0.14:283
chr1	248617193	rs150777100	C	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.668;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=12.300;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-10.097;QD=3.39;ReadPosRankSum=2.724;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:98,34:0.26:132
chr1	248651927	rs201060805	A	G	464.82	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.54;QD=22.13;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	248685253	rs9727474	T	C	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	248722722	rs199528787	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.11;QD=27.86;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	248737259	rs189248971	C	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.06;QD=27.73;SOR=7.824;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	248738133	rs373986839	A	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr1	248789454	rs1892441	G	C	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	248789504	rs1892442	T	C	8416.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr1	248790075	rs1892443	A	G	13375.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr1	248801505	.	T	TCA	1382	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=1;MGOF=81;MMLQ=26;MQ=48.29;NF=21;NR=8;PP=1382;QD=49.1379310345;SC=TCCTTCCTGATCAGTCACCAC;SbPval=0.56;Source=Platypus;TC=29;TCF=21;TCR=8;TR=29;WE=248801574;WS=248801495;set=Platypus	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	248801514	.	AC	A	1116	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=6;HapScore=1;MGOF=81;MMLQ=24;MQ=47.94;NF=24;NR=9;PP=1116;QD=34.7575757576;SC=ATCAGTCACCACCCCTGATGC;SbPval=0.55;Source=Platypus;TC=33;TCF=24;TCR=9;TR=33;WE=248801574;WS=248801495;set=Platypus	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	248801778	rs201643849	A	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.32;QD=30.55;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	248801944	rs143010547	TCAGCACG	T	22690.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=3.282;MLEAC=2;MLEAF=1.000;MQ=47.27;MQRankSum=-4.964;QD=43.64;ReadPosRankSum=3.491;SOR=0.277;set=HC	GT:AD:AF:DP	1/1:5,515:0.99:520
chr1	248813135	rs4916153	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	248813547	rs201161767	G	C	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.84;QD=28.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	248813972	rs147604785	G	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.882;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.67;MQRankSum=2.013;QD=13.54;ReadPosRankSum=-1.925;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	248814052	rs28533004	T	A	3357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.506;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=47.08;MQRankSum=-1.604;QD=10.36;ReadPosRankSum=0.764;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:154,170:0.52:324
chr1	248814080	rs1782242	A	C	10333.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:2,413:1.00:415
chr1	248814126	rs28418327	G	A	10437.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr1	248845097	rs2000390	C	T	10109.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr1	248845411	rs11485825	G	A	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	248845458	rs4509608	C	T	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr1	248845471	rs4575113	T	C	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	248845499	rs4462184	A	G	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	249110906	rs4926508	G	C	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	45895	rs4241318	A	G	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	224919	rs2290911	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.113;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:75,15:0.17:90
chr2	224970	rs2290912	C	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.947;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr2	230912	rs2306060	A	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.642;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr2	233416	rs300756	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr2	242732	rs113405432	T	TAAC	714.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.458;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.757;QD=7.77;ReadPosRankSum=0.249;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr2	242800	rs10181051	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:174,47:0.21:221
chr2	243567	rs11383620	T	TA	1149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.743;QD=3.06;ReadPosRankSum=1.247;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:271,105:0.28:376
chr2	247623	rs376311077	C	T	3796.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:66,168:0.72:234
chr2	253291	rs34931255	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	262553	rs7596678	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.379;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:101,20:0.17:121
chr2	264019	rs7595075	C	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:137,55:0.29:192
chr2	264895	rs4854300	G	C	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	271797	rs59937473	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.623;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr2	271998	rs112400131	CA	C	2512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.587;QD=9.10;ReadPosRankSum=0.565;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:68,208:0.75:276
chr2	272203	rs11553746	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.123;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:252,86:0.25:338
chr2	272840	rs12714401	G	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=1.710;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr2	272926	rs12714402	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.679;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:173,37:0.18:210
chr2	273070	rs12714403	A	G	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	277003	rs79716074	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.986;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	283231	rs368562757	A	AT	1917.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	287448	rs376142253	TAAA	T	864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.516;QD=21.09;ReadPosRankSum=1.715;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:7,34:0.83:41
chr2	672976	rs58078949	A	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr2	676177	rs2293083	C	G,T	9562.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=427;set=Intersection	GT:AF:DP	1/2:0.29,0.71:420
chr2	676457	rs2293082	G	C	33485.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	1/1:0,722:1.00:722
chr2	676478	rs3215297	T	TGTAA	41367.73	.	AC=2;AF=1.00;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	1/1:0,906:1.00:906
chr2	676715	.	G	T	1777.77	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,73:0.70:104
chr2	677213	rs3749138	G	A	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	905385	.	GGTCTGGTCTTTCATTTCCTCCCGGCCTCCTCGCCTGCACTGC	G	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=1.105;QD=0.84;ReadPosRankSum=-0.094;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:75,8:0.10:83
chr2	1079130	rs4971429	G	A	9813.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	1079130	.	GCG	ACA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=21;MQ=60.0;NF=66;NR=39;PP=2947;QD=20;SC=TGAGCAGGAGGCGTGCGTCAC;SbPval=0.68;Source=Platypus;TC=114;TCF=68;TCR=46;TR=105;WE=1079151;WS=1079120;set=Platypus	GT:AD:AF:DP	1/1:9,105:0.92:114
chr2	1079132	rs4971430	G	A	9813.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=0.989;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	1079143	rs4971431	A	G	7222.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr2	1079320	rs4971432	C	T	9984.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr2	1093965	rs11127460	G	A	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	1133188	rs5828807	G	GCACA	960.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr2	1168756	rs4597564	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:158,52:0.25:210
chr2	1241592	rs146197111	C	T	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	1320143	rs4927635	C	T	8116.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	1320300	rs35466197	A	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	1320304	rs74994128	CG	AC	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	1418192	rs9678281	C	G	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	1437410	rs4927578	C	T	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	1442551	rs34191654	AT	A	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.672;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.509;QD=1.78;ReadPosRankSum=0.393;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:177,82:0.32:259
chr2	1457364	rs2070881	A	G	10581.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr2	1459806	rs4927610	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	1460004	rs4927611	G	T	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	1460140	rs4927612	A	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	1488668	rs6715129	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	1491497	rs6727192	T	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:32,71:0.69:103
chr2	1491510	.	C	CA	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.800;QD=1.36;ReadPosRankSum=-0.042;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:96,27:0.22:123
chr2	1497442	rs9679267	A	G	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:20,78:0.80:98
chr2	1497803	rs1126797	C	T	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:62,200:0.76:262
chr2	1499728	rs2276704	C	T	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr2	1499899	rs732608	C	T	6434.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:159,305:0.66:464
chr2	1499927	rs732609	A	C	5638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.20;ReadPosRankSum=0.659;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:133,264:0.66:397
chr2	1500665	rs867983	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	1520676	rs1126799	T	C	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:71,115:0.62:186
chr2	1544617	rs12615819	G	A	5239.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:140,247:0.64:387
chr2	1546327	rs1042589	C	G	1920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-1.992;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:535,158:0.23:693
chr2	1642537	rs6729142	T	C	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.70;ReadPosRankSum=0.151;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr2	1642539	rs6742040	C	T	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.72;ReadPosRankSum=-0.134;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,23:0.88:26
chr2	1642545	rs6742039	C	G	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.47;ReadPosRankSum=0.096;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:3,24:0.89:27
chr2	1642803	.	CGGGTCTCATTTCAAGGTTTCCTGGGTGTGCACCGCCCCTGATGCTCTGAGCT	C	284.73	.	AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=4.59;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	1647171	rs6730800	T	C	6932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=-0.850;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:102,316:0.76:418
chr2	1651842	rs11685976	C	A	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:25,80:0.76:105
chr2	1652660	rs3811613	G	A	4683.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:84,203:0.71:287
chr2	1652822	rs1863135	T	G	4631.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:99,215:0.68:314
chr2	1664654	rs17841813	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:22,56:0.72:78
chr2	1667310	rs12475392	G	A	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:57,126:0.69:183
chr2	1683923	rs72763569	G	T	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.121;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr2	1747993	rs62116430	G	A	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:33,99:0.75:132
chr2	1842968	rs6728368	T	C	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	1843285	rs10196494	A	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.40;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	1844458	rs4381806	T	C	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	1844652	rs7425544	C	T	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	1844672	.	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-2.282;QD=2.57;ReadPosRankSum=-0.240;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	1844676	rs7425542	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-1.349;QD=11.37;ReadPosRankSum=-0.420;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr2	1890173	rs4853824	A	G	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	1913874	rs2241684	C	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.912;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr2	1926437	rs1529667	G	T	11884.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,432:1.00:432
chr2	1926617	rs2241686	G	A	2709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=972;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.540;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:750,217:0.22:967
chr2	1946646	rs7355555	A	C	2411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.435;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:356,153:0.30:509
chr2	1946914	rs3748988	A	G	1426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.644;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:428,121:0.22:549
chr2	1982915	rs3214602	GA	G	777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.564;QD=1.80;ReadPosRankSum=1.896;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:331,100:0.23:431
chr2	1983374	rs2304008	A	C	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.315;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:219,74:0.25:293
chr2	1983619	rs7561518	A	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.176;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:133,35:0.21:168
chr2	3193040	rs17682	G	A	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:51,221:0.81:272
chr2	3200948	rs1037467	C	A	203.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	3212247	rs7584823	G	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=9.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-0.990;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr2	3212704	rs7595702	C	A	3642.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:65,164:0.72:229
chr2	3212817	rs12467123	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	3217777	rs11127386	A	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	3217794	rs10865535	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	3217908	rs11682452	G	C	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	3277947	rs2694081	T	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr2	3322555	rs62121538	T	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr2	3322797	rs12618407	C	A	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-1.789;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:35,93:0.73:128
chr2	3342009	rs3811617	T	C	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	3356850	rs12479261	T	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr2	3356953	rs2875394	A	T	5164.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.776;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=1.026;SOR=0.294;set=HC	GT:AD:AF:DP	1/1:1,204:1.00:205
chr2	3356995	rs62119517	G	A	5922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=0.016;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:93,273:0.75:366
chr2	3358458	rs146001084	ATTATGAAGTTAGAT	A	3007.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=44.23;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	3381189	rs13022433	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr2	3391826	rs11127423	C	T	2116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=35.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=0.438;SOR=3.015;set=HC	GT:AD:AF:DP	0/1:50,103:0.67:153
chr2	3392075	rs10865541	T	C	20166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=1329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=1.428;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:374,943:0.72:1317
chr2	3392295	rs11686212	A	G	10206.77	.	AC=1;AF=0.500;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	0/1:280,483:0.63:763
chr2	3392513	rs12999423	TT	CA	19811.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;JOINED;set=Intersection	GT:AD:AF:DP	0/1:178,488:0.73:666
chr2	3393565	rs71396985	C	CAA	7854.73	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:89,198:0.69:287
chr2	3425514	rs7558487	G	C	5311.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:94,239:0.72:333
chr2	3425948	rs10206964	T	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr2	3460870	rs7579428	T	C	59.79	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	3469463	rs4971514	G	C	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:36,94:0.72:130
chr2	3469506	rs35561008	T	C	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,79:0.68:117
chr2	3470115	rs7593516	T	C	19532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.56;ReadPosRankSum=-0.443;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:132,487:0.79:619
chr2	3470124	rs7574517	G	A	19678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.09;ReadPosRankSum=1.771;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:155,499:0.76:654
chr2	3470186	rs11691759	G	C	7408.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:122,346:0.74:468
chr2	3470254	rs11677515	T	G	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:55,135:0.71:190
chr2	3481637	rs4535074	T	C	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:24,76:0.76:100
chr2	3481659	rs4321399	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr2	3481716	rs4535075	T	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr2	3482722	rs13003061	C	T	5304.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:88,247:0.74:335
chr2	3483181	rs13986	C	T	9640.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:160,445:0.74:605
chr2	3483205	rs6767	C	T	6867.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:111,317:0.74:428
chr2	3483390	rs7569694	T	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr2	3488502	rs9752130	A	G	11221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=-1.710;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:204,530:0.72:734
chr2	3523324	rs10179340	A	G	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	3605468	rs12711976	A	G	11997.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr2	3605528	rs62106013	T	G	13028.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr2	3605538	rs34613047	A	C	12329.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	3627648	rs7576238	G	C	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	3652616	rs3769507	G	C	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	3653576	rs7604806	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	3653844	rs3739147	T	C	8731.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr2	3660752	rs3811531	T	C	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	3660856	rs7567724	G	A	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:61,207:0.77:268
chr2	3685046	rs3811528	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.192;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr2	3685074	rs3811527	A	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.168;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:89,19:0.18:108
chr2	3718646	rs60644898	G	A	1898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.18;ReadPosRankSum=0.671;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:12,47:0.80:59
chr2	3718655	rs59726279	A	G	2003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.36;ReadPosRankSum=0.712;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:14,52:0.79:66
chr2	3718692	rs13409104	C	T	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:23,92:0.80:115
chr2	3721632	rs13390724	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	3721637	rs72082952	ATCTT	A	451.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	3721729	rs12105179	A	G	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:25,63:0.72:88
chr2	3721821	rs13406032	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chr2	3725964	rs72769388	C	T	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr2	3726163	rs2043080	T	C	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:27,88:0.77:115
chr2	3774390	rs116463952	G	A	2375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.00;ReadPosRankSum=2.850;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:8,58:0.88:66
chr2	3774394	rs77876490	C	T	2378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.50;ReadPosRankSum=1.801;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:7,60:0.90:67
chr2	3774436	rs357940	C	T	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	3774448	rs12711970	T	C	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:21,89:0.81:110
chr2	3774519	rs357941	T	C	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr2	3800383	rs357969	C	T	9058.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr2	3800496	rs357968	C	T	5530.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	3815250	rs10180257	A	G	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	3815532	rs11404437	A	AT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.361;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr2	3826324	rs13005405	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=-1.617;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr2	3826387	rs13021385	T	C	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.956;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:210,65:0.24:275
chr2	3826597	rs13035992	G	A	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.489;QD=2.03;ReadPosRankSum=-1.879;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:138,35:0.20:173
chr2	5834249	rs3841075	G	GTGA	984.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr2	7001225	.	ACACACACACG	A	423	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=23;MQ=59.62;NF=18;NR=26;PP=423;QD=10.0909090909;SC=ATGTACGTATACACACACACG;SbPval=0.6;Source=Platypus;TC=55;TCF=23;TCR=32;TR=44;WE=7001245;WS=7001214;set=Platypus	GT:AD:AF:DP	1/1:11,44:0.80:55
chr2	7001233	rs3085147	ACG	A	5599.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.58;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	7001247	.	ACACACACACACC	A	103.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.065;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:89,15:0.14:104
chr2	7001249	rs202012587	ACACACACACC	A	1335.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=0.960;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:45,53:0.54:98
chr2	7001251	.	ACACACACC	A	488.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=1.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.267;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:71,27:0.28:98
chr2	7001259	.	C	A	1501	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=2;HapScore=1;MGOF=120;MMLQ=27;MQ=59.8;NF=60;NR=42;PP=1501;QD=15.0565805152;SC=ACACACACACCCACACACTTA;SbPval=0.46;Source=Platypus;TC=105;TCF=63;TCR=42;TR=102;WE=7001267;WS=7001249;set=Platypus	GT:AD:AF:DP	1/1:3,102:0.97:105
chr2	7003879	rs2712039	G	A	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	7005069	rs2595172	C	T	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	7005369	rs11678810	A	G	6443.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:1,257:1.00:258
chr2	7005992	rs4669108	C	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	7017903	rs10182815	A	G	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	7019079	rs6704746	A	G	6842.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	7027323	rs9917321	T	A	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	7046272	.	TAC	T	1445.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=-0.152;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:5,52:0.91:57
chr2	7050426	rs6725201	G	C	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.471;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:222,74:0.25:296
chr2	7050483	.	A	ATGTGTG	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.528;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr2	7076975	.	A	AGT,AGTGTGT	244	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.4953,0.5000;HP=1;HapScore=3;MGOF=6;MMLQ=17;MQ=59.6;NF=4,4;NR=10,10;PP=15,244;QD=1.28571428571;SC=CACACACAGTAGTGTGTGTGT;SbPval=0.61;Source=Platypus;TC=24;TCF=7;TCR=17;TR=14,14;WE=7076983;WS=7076965;set=Platypus	GT:AF:DP	0/1:0.58:24
chr2	7130516	.	TACACACACAC	T	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=-0.000;DP=51;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.27;ReadPosRankSum=1.778;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	7137067	rs364891	A	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	7154632	rs309325	T	C	12002.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,467:1.00:467
chr2	7164578	rs376219	A	G	11988.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr2	7164746	rs392709	C	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	7164812	rs392409	C	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-2.375;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr2	7170157	rs145818266	TATC	T	2488.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:12,61:0.84:73
chr2	7170388	.	CTGTGTGTG	C,CTG	1403.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=301;set=Intersection	GT:AF:DP	0/1:0.59:111
chr2	7179961	rs72783732	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	7243449	rs377485765	AGTGT	A	1808.73	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:184,60:0.25:244
chr2	7249826	.	ATG	A	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.446;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr2	7386192	rs72770055	T	C	4192.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:49,189:0.79:238
chr2	7403641	rs111726098	T	TAC,TACACAC	1888.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.394;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.298;QD=37.77;ReadPosRankSum=-0.603;SOR=0.280;set=HC	GT:AD:AF:DP	1/2:1,19,30:0.38,0.60:50
chr2	7409989	rs10548278	TTG	T	1356.73	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:136,66:0.33:202
chr2	7421557	rs4668533	C	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr2	7421569	rs142314951	C	CTG	1723.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr2	7471480	rs70942698	T	TCTCA,TCACACACA	4064.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.635;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.94;MQRankSum=0.000;QD=24.63;ReadPosRankSum=-1.561;SOR=1.213;set=HC	GT:AD:AF:DP	1/2:14,39,112:0.24,0.68:165
chr2	7471732	rs6732990	G	A	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	7540646	rs5829105	C	CA	2066.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=-1.516;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:39,78:0.67:117
chr2	7540695	rs2163257	C	G	1932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=1.656;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:34,90:0.73:124
chr2	7540784	rs4669196	T	C	559.78	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr2	7594516	rs1466671	G	A	4887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-1.344;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:507,151:0.23:658
chr2	7594520	rs1466672	C	T	4877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-1.215;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:527,158:0.23:685
chr2	8178735	rs1364054	A	G	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.428;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:264,72:0.21:336
chr2	8178798	rs62104935	C	T	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.740;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:166,52:0.24:218
chr2	8822912	rs3845751	A	C	4504.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.001;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=6.312;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.000;QD=25.89;ReadPosRankSum=1.767;SOR=0.134;set=HC	GT:AD:AF:DP	1/1:8,166:0.95:174
chr2	8866844	rs13024421	C	G	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	8870814	rs6431959	A	G	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	8871342	rs1044280	C	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:189,83:0.31:272
chr2	8887910	rs1978841	A	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr2	8898036	rs6750682	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.108;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr2	8910717	.	T	C	30	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=3;NR=0;PP=30;QD=21.5904041824;SC=TATTATTTTGTATTGTCTGCT;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=3;WE=8910725;WS=8910709;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr2	8910987	rs12476359	A	T	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	8911010	rs17630893	T	C	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr2	8916847	rs4669338	A	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	8942966	rs112585756	T	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.711;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr2	8943291	rs2356658	G	A	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	8998624	rs10929559	A	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	8998775	rs71657308	C	CA	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.697;QD=1.38;ReadPosRankSum=-0.184;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:161,43:0.21:204
chr2	9419411	rs10193043	G	A	7206.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.28;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	9419411	.	GACAC	AACAC,AACAT	1207	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=66,13;NR=56,9;PP=1207,104;QD=10.1784525619;SC=TCTCAGCACAGACACGGTTTA;SbPval=0.54;Source=Platypus;TC=123;TCF=66;TCR=57;TR=122,22;WE=9419423;WS=9419401;set=Platypus	GT:AF:DP	0/1:0.99:123
chr2	9419415	rs10170149	C	T	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.132;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:192,55:0.22:247
chr2	9458460	rs3811599	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	9460234	rs17522163	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	9463454	rs12475160	C	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:191,74:0.28:265
chr2	9467815	rs7569295	C	T	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:12,57:0.83:69
chr2	9475337	rs4392227	A	G	5256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-1.315;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:83,256:0.76:339
chr2	9484542	rs6724103	C	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	9484561	rs79044067	TAAAA	T	2753.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	9491017	rs4669385	C	T	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	9496291	rs2709591	T	C	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-2.896;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:393,125:0.24:518
chr2	9514917	rs33930824	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-2.158;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr2	9547171	rs10929579	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:86,34:0.28:120
chr2	9552379	rs10929581	C	T	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.536;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:84,22:0.21:106
chr2	9552383	rs112462761	A	AT	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.822;QD=5.14;ReadPosRankSum=-1.584;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:88,28:0.24:116
chr2	9554255	rs10208358	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr2	9554280	rs12474647	A	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:66,27:0.29:93
chr2	9554461	rs10185646	C	A	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.456;QD=1.52;ReadPosRankSum=0.512;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:365,78:0.18:443
chr2	9558905	.	CT	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=1.581;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:75,35:0.32:110
chr2	9569972	rs7589401	A	T	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:116,43:0.27:159
chr2	9569994	.	C	G	830.77	.	AC=1;AF=0.500;AN=2;DP=247;set=Intersection	GT:AD:AF:DP	0/1:175,61:0.26:236
chr2	9571054	rs2002044	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-0.036;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr2	9572888	rs12478467	A	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.609;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr2	9580540	.	G	GT	26	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=21;MQ=60.0;NF=3;NR=0;PP=26;QD=29.9485868237;SC=ATCATTTCTTGTTCTGTGTGT;SbPval=1.0;Source=Platypus;TC=13;TCF=12;TCR=1;TR=3;WE=9580548;WS=9580530;set=Platypus	GT:AD:AF:DP	0/1:10,3:0.23:13
chr2	9583922	rs11681316	A	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr2	9592995	.	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.030;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr2	9615556	rs6432007	T	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	9616035	rs7591166	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	9616301	rs3831465	TAGG	T	705.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;QD=39.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	9630231	rs6705408	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	9630244	rs3833563	AT	A	757.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	9631340	rs10495562	T	C	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	9633137	rs4622692	T	G	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	9634856	rs1048610	A	G	9042.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr2	9642478	rs34367192	C	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	9642521	rs13031491	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	9650350	rs35431407	C	CATAA	1941.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	9661184	rs4328603	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr2	9662410	rs35744046	T	C	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	9695906	rs12692386	A	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	9727657	rs41308184	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:63,23:0.27:86
chr2	9981672	rs112717131	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-1.580;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr2	9983591	rs35818430	A	AG	10003.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	9983686	rs2303914	G	T	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:31,108:0.78:139
chr2	9983716	rs385513	A	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	9985341	rs3214586	TC	T	2172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.683;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:353,102:0.22:455
chr2	9989442	rs16867195	A	G	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:23,67:0.74:90
chr2	9991556	.	G	A	41	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=9;HapScore=2;MGOF=16;MMLQ=26;MQ=60.0;NF=3;NR=0;PP=41;QD=25.2570708491;SC=TGGGTTAATTGAAAAAAAAAG;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=3;WE=9991564;WS=9991546;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	9994288	rs4669471	C	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr2	10008872	rs12623017	A	G	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:30,125:0.81:155
chr2	10044941	rs450192	G	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.15;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	10044946	rs450194	G	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.375;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr2	10044999	rs76120746	C	G	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.166;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:168,56:0.25:224
chr2	10045014	rs400917	C	T	12580.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	10045024	rs396190	G	A	13371.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.32;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr2	10045113	rs116114439	C	T	7515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=0.390;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:106,352:0.77:458
chr2	10045147	rs448327	A	G	7971.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr2	10050947	rs1054561	T	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	10050960	rs1054565	A	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	10051053	rs10495576	G	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	10053412	rs12467598	C	T	9462.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr2	10059770	rs1820965	G	T	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr2	10094992	rs2303918	A	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.713;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:81,26:0.24:107
chr2	10095374	rs13401891	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr2	10105584	.	A	AT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=6.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=2.011;SOR=0.225;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr2	10126416	rs16867274	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.889;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chr2	10133506	rs189140892	A	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=1.630;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr2	10133728	rs6711126	T	C	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.936;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:183,66:0.27:249
chr2	10133820	rs6750565	C	T	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.225;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:135,55:0.29:190
chr2	10135855	rs11674576	T	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.698;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.991;QD=7.12;ReadPosRankSum=-0.230;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr2	10135956	rs41264205	G	A	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.313;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:406,99:0.20:505
chr2	10140651	rs2163338	A	G	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.121;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:275,70:0.20:345
chr2	10183748	rs372827624	TGCC	T	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.175;QD=3.59;ReadPosRankSum=0.031;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr2	10183970	rs115226520	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:73,33:0.31:106
chr2	10186419	rs35927125	A	G	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.047;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:208,67:0.24:275
chr2	10188649	rs11687357	A	T	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.122;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:282,101:0.26:383
chr2	10262920	rs1130609	T	G	13343.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:2,516:1.00:518
chr2	10264057	rs6432065	T	C	9582.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr2	10281903	rs5829249	G	GC	6174.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	10282147	rs11896140	T	C	12199.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr2	10332539	rs13392520	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.260;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr2	10332876	rs56228505	AC	A	1390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.30;ReadPosRankSum=3.465;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,55:0.72:76
chr2	10581086	.	A	AT	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-2.064;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	10581107	.	G	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.054;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	10585302	rs2302613	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	10586780	rs28362380	T	C	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.29;ReadPosRankSum=-0.367;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	10586790	rs7608353	A	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.19;ReadPosRankSum=0.121;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr2	10587169	rs7558559	T	A	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	10595534	rs6721235	T	C	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:81,174:0.68:255
chr2	10595691	rs6731439	G	A	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:40,89:0.69:129
chr2	10712278	rs3732114	C	T	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=0.333;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:55,107:0.66:162
chr2	10717806	rs2287059	C	T	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-2.109;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:298,106:0.26:404
chr2	10729897	rs759403	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.68;ReadPosRankSum=-2.216;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	10740841	rs4668692	T	C	303.31	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr2	10741141	rs10181806	A	G	190.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	10743153	rs2287061	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr2	10743191	rs2287062	G	A	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:29,88:0.75:117
chr2	10743319	rs2287063	T	C	4959.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:74,236:0.76:310
chr2	10747246	rs6744854	C	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	10747271	rs6759740	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr2	10747298	rs71392244	A	AT	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr2	10762302	rs70953325	TA	T	9669.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr2	10784491	rs3732111	A	G	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-2.359;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,72:0.87:83
chr2	10784528	rs3821196	T	C	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:10,60:0.86:70
chr2	10799467	rs35723682	TG	T	249.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;MQRankSum=0.555;QD=17.85;ReadPosRankSum=0.497;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr2	10808776	rs55925118	C	CAA	4259.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	10813782	rs6748766	T	C	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	10908662	rs12468989	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.791;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-2.678;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	10911891	rs1198850	T	C	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.517;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr2	10912092	rs12999992	C	T	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:46,119:0.72:165
chr2	10912153	rs2171773	T	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr2	10912719	rs72777388	G	A	1721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.136;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:305,118:0.28:423
chr2	10915020	rs2969881	A	G	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-3.887;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:222,75:0.25:297
chr2	10915037	rs13020917	C	T	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.717;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:239,80:0.25:319
chr2	10917594	rs3856467	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr2	10923353	rs17364812	T	C	4249.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:55,196:0.78:251
chr2	10924524	rs1198873	T	C	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr2	10927345	rs1686510	T	C	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=-1.226;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:12,45:0.79:57
chr2	10928694	rs139639749	G	GAA	749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=0.584;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr2	10928777	rs2952626	A	C	5375.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:93,246:0.73:339
chr2	10928906	rs1734432	T	C	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:66,203:0.75:269
chr2	10928962	rs1734431	A	G	3491.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:64,156:0.71:220
chr2	10929133	rs1734430	A	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:8,47:0.85:55
chr2	10929867	rs11904084	T	C	4325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=4.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.303;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:70,215:0.75:285
chr2	10930050	rs1686514	A	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=-1.579;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr2	10931001	rs1614107	A	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr2	10932082	rs1734421	T	C	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:48,85:0.64:133
chr2	10933195	rs17455876	T	A	7144.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:86,324:0.79:410
chr2	10937409	rs1686444	C	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr2	10938043	rs56346617	T	G	460.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.95;ReadPosRankSum=-0.594;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr2	10942567	rs1686434	G	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr2	10942687	rs4758	C	T	8686.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:124,403:0.76:527
chr2	10950284	rs1734449	G	C	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:20,64:0.76:84
chr2	10952648	rs116156133	C	T	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=1.780;SOR=1.531;set=HC	GT:AD:AF:DP	0/1:19,44:0.70:63
chr2	10952790	rs6726687	T	C	9873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=1.490;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:155,459:0.75:614
chr2	10977585	rs76076331	C	T	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:30,82:0.73:112
chr2	10994418	rs1198852	T	C	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	11053020	rs3732104	A	G	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.556;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:394,130:0.25:524
chr2	11260874	rs79428888	G	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.862;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr2	11260975	rs79178007	G	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.398;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:166,43:0.21:209
chr2	11261092	rs78695173	T	G	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=1.248;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:200,67:0.25:267
chr2	11264701	rs186565546	C	T	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr2	11264830	rs7560331	G	A	18553.77	.	AC=2;AF=1.00;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr2	11273407	.	GTC	G	3121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DP=1128;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=2.528;QD=3.06;ReadPosRankSum=-0.395;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:825,196:0.19:1021
chr2	11280500	rs138426688	TAA	T	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-1.464;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:36,26:0.42:62
chr2	11295226	rs148805827	C	CG	1766.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=32.12;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	11295247	.	G	GGGGCGAGGCGAGGTTGGCCAGA	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.080;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=9.986;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.312;QD=2.39;ReadPosRankSum=-1.217;SOR=2.260;set=HC	GT:AD:AF:DP	0/1:83,10:0.11:93
chr2	11295867	rs7598570	G	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.663;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:73,31:0.30:104
chr2	11300732	rs2271622	C	T	14751.77	.	AC=1;AF=0.500;AN=2;DB;DP=940;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:256,663:0.72:919
chr2	11300869	rs6432182	T	C	12541.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:1,491:1.00:492
chr2	11300927	rs59329825	TAAA	T	1067.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.591;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-1.957;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:19,48:0.72:67
chr2	11304471	.	A	ATATT	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=4.020;MLEAC=1;MLEAF=0.500;MQ=62.96;MQRankSum=1.250;QD=11.57;ReadPosRankSum=-0.472;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:19,37:0.66:56
chr2	11312181	rs12987956	G	A	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:29,78:0.73:107
chr2	11312224	rs3732103	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr2	11333994	rs2271621	T	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=1.105;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr2	11348364	rs141148984	C	CTAACT	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=33.98;ReadPosRankSum=-0.084;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	11348609	rs5829297	CAAAT	C	565.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr2	11354701	.	G	C	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=2.779;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr2	11356190	rs726843	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr2	11357100	rs57554471	G	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=2.112;QD=13.56;ReadPosRankSum=1.203;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr2	11359031	rs9808228	G	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.12;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	11359120	rs2230774	G	T	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,44:0.80:55
chr2	11680896	rs34137466	CAA	C	658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.64;ReadPosRankSum=-0.912;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	11718591	rs1529868	C	T	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chr2	11725179	rs55893544	G	GA	441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.278;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:119,51:0.30:170
chr2	11725241	rs12470971	G	A	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-2.245;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:408,114:0.22:522
chr2	11727507	rs13394619	G	A	2459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.820;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:523,182:0.26:705
chr2	11731774	rs2358040	T	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	11738091	rs1435547	T	C	11323.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr2	11738765	rs1865575	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	11741193	rs11681838	C	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.39;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	11752635	rs2304399	T	C	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	11755443	rs2252958	T	G	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	11757009	rs6735957	A	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	11774324	rs2304402	G	A	18411.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,703:1.00:703
chr2	11810095	rs6432225	G	A	10234.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr2	11818019	rs11694975	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.819;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr2	11853913	rs4614906	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	11853964	rs4640359	G	A	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	11905636	rs3214670	GT	G	5243.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.785;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=2.247;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.235;QD=20.09;ReadPosRankSum=-0.157;SOR=1.704;set=HC	GT:AD:AF:DP	1/1:4,257:0.98:261
chr2	11905876	rs10209969	C	T	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	11924950	rs3795974	T	C	4942.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:72,230:0.76:302
chr2	11928423	rs17603350	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:93,34:0.27:127
chr2	11932173	rs7561070	G	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:10,54:0.84:64
chr2	11936798	rs2577264	A	G	510.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.54;ReadPosRankSum=-0.761;SOR=2.350;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr2	12858444	rs55813198	A	G	4810.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:85,226:0.73:311
chr2	12864613	rs6432324	T	A	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	12877501	rs5829384	G	GA	17222.73	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr2	12877609	rs7604252	C	T	9714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=-0.622;QD=15.85;ReadPosRankSum=-0.987;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:165,448:0.73:613
chr2	12877695	rs7564991	A	C	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr2	15319022	rs3731995	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	15319070	rs5829492	TA	T	1208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.639;QD=9.83;ReadPosRankSum=1.011;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:29,94:0.76:123
chr2	15326834	rs2302940	T	C	11171.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr2	15372562	rs6710817	C	T	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	15378822	rs140225141	G	GAATT	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;MQ=61.34;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	15415525	rs3755127	C	T	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.394;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	15416907	rs73197007	T	C	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	15417280	rs3214432	ATT	A	2177.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	15417285	rs75287593	T	A	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	15448311	rs1318102	A	T	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	15491994	.	GCACACACACACA	G,GCA	6954.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=345;set=Intersection	GT:AF:DP	1/2:0.22,0.76:282
chr2	15493881	rs2277915	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	15519992	rs2058866	G	T	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	15523266	rs6756934	A	T	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	15523307	rs3834149	TA	T	1187.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.84;SOR=1.453;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	15523549	rs3755129	T	C	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	15533689	rs2380650	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	15533734	rs139494535	G	GAAATGAAAGCGTATGTCTACAC	2835.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=67.52;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	15533779	rs9710889	G	A	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=25.49;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	15533884	rs9710962	C	A	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	15533895	rs13417550	A	G	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.72;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	15533899	rs11689153	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.37;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	15536509	.	G	GA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.152;QD=0.79;ReadPosRankSum=1.678;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr2	15564718	rs10929367	T	C	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	15567649	rs3796002	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	15601287	rs11411624	A	AT	3380.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	15601441	rs7590340	C	T	9607.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr2	15601574	rs7590458	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	15607842	rs4668909	T	C	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	15608013	rs4668910	C	A	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	15614404	rs13014906	T	C	7405.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	15615910	rs1990754	A	G	11756.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr2	15616013	rs1990755	C	G	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	15616030	rs1990756	C	T	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	15618339	rs1125534	G	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	15623608	rs10201564	C	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	15644107	rs3732002	C	A	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.90;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	15644111	rs3732003	C	T	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.28;SOR=2.649;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	15644401	rs2287265	C	T	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	15674686	rs13029846	T	C	7084.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	15676686	rs10208972	G	A	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	15676703	rs57935128	T	TA	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=7.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.039;SOR=1.769;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr2	15678368	rs7595512	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	15678482	rs2380657	T	C	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	15678501	rs66736557	GA	G	2665.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.83;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	15679609	rs2058868	A	T	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	15691886	rs7572131	G	A	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	15694164	rs34789730	T	TA	5973.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	15731998	rs10221770	A	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr2	15735648	rs2302929	T	C	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	15737698	rs2302932	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=-0.657;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	15744184	rs11695856	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.07;ReadPosRankSum=0.301;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	15746220	rs41264195	C	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=1.881;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:66,34:0.34:100
chr2	15747393	rs10929378	C	T	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=6.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-0.234;SOR=1.097;set=HC	GT:AD:AF:DP	0/1:208,60:0.22:268
chr2	15768876	rs11900266	G	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.830;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:104,41:0.28:145
chr2	15768981	rs62122280	C	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr2	15840505	rs4668460	C	A	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	15840522	rs4668461	G	T	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	15840645	rs4668962	T	C	6416.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	15841230	rs1421610	T	A	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	15841288	rs1421609	G	A	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	17696573	rs834514	C	T	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	17698678	rs665312	A	G	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	17773524	rs2680827	G	A	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	17836722	.	T	TCACACACA	678.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=4.222;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.252;QD=27.15;ReadPosRankSum=-0.510;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr2	17881472	rs371878085	T	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:15,47:0.76:62
chr2	17913266	rs2052746	A	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	17941423	rs2555072	T	G	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	17942775	rs1812152	T	A	9435.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr2	17954027	rs300175	G	A	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	17954140	rs300176	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	17954421	rs300177	C	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	17959420	rs10535305	TAC	T	115.76	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	17959443	rs71402623	A	G	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	17962450	rs300168	A	G	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	17962518	rs300169	C	T	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	17998025	rs34069439	A	T	3455.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:68,157:0.70:225
chr2	17998095	rs35858730	C	T	4455.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:63,197:0.76:260
chr2	17998331	rs13001625	T	C	17748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.512;ClippingRankSum=0.000;DB;DP=1082;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.141;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:255,803:0.76:1058
chr2	18112473	rs4240213	G	A	9240.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr2	18113508	rs3747516	G	A	10408.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:153,478:0.76:631
chr2	18113623	rs4832524	A	G	5755.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:96,261:0.73:357
chr2	18736630	rs74378191	C	T	8861.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:127,404:0.76:531
chr2	18757501	rs3902946	G	C	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:30,70:0.70:100
chr2	18758287	rs116178355	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr2	18768850	rs16985306	A	G	5642.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:100,256:0.72:356
chr2	18770540	rs6720633	G	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,60:0.79:76
chr2	20097874	rs12328613	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:108,36:0.25:144
chr2	20101487	rs2304589	G	A	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.041;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:173,53:0.23:226
chr2	20131184	rs1191779	C	A	5381.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	20131987	rs4294960	T	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=-0.619;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	20135283	rs6741091	T	C	11528.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr2	20160250	rs12996974	G	C	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr2	20173255	rs10153717	A	C	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	20189089	rs3731663	C	T	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr2	20192696	rs7569975	G	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	20192931	rs35973216	G	A	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=2.033;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:31,75:0.71:106
chr2	20194036	rs3820949	G	C	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	20202811	rs11681705	A	G	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	20202929	rs28452699	C	T	4620.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:69,212:0.75:281
chr2	20205423	rs5829721	A	AAAAG	2270.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	20205680	rs28401180	C	T	17689.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.566;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.32;ReadPosRankSum=-0.973;SOR=0.252;set=HC	GT:AD:AF:DP	1/1:1,671:1.00:672
chr2	20205848	rs28598872	G	A	13586.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr2	20233135	rs1191824	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	20237512	.	TA	T	22	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=0.9999;HP=18;HapScore=2;MGOF=2;MMLQ=27;MQ=57.83;NF=0;NR=2;PP=22;QD=12.5;SC=GCCAAGAGGGTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=2;WE=20237520;WS=20237502;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr2	20302490	.	GAGA	G	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-4.182;QD=0.48;ReadPosRankSum=1.868;SOR=1.272;set=HC	GT:AD:AF:DP	0/1:215,21:0.09:236
chr2	20302527	rs12612373	C	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.201;QD=2.04;ReadPosRankSum=-1.122;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:256,73:0.22:329
chr2	20320480	rs11885236	G	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.548;QD=8.71;ReadPosRankSum=-0.709;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	20320493	rs28380549	G	A	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=40.79;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	20403794	rs10205485	A	T	9291.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	20405050	rs6531225	A	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	20423154	rs4666375	A	G	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	20424062	rs138986173	G	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:30,7:0.19:37
chr2	20699625	rs13010768	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-0.284;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr2	20699667	rs342089	C	G	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr2	20700786	rs961496	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	20700900	rs342088	A	G	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	20818454	rs3732152	T	A	17015.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr2	20818458	rs3732151	G	A	17221.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr2	20822218	rs4666444	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	20823612	rs13030108	A	G	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	20823724	rs6531248	T	C	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	20823816	rs2305460	G	T	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	20823850	rs6733419	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	20824559	rs2305457	C	T	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:284,112:0.28:396
chr2	20824658	rs10199441	G	A	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	20824708	rs10191266	T	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	20838318	rs3796064	G	A	11465.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:196,527:0.73:723
chr2	20845273	rs2304423	G	A	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:55,132:0.71:187
chr2	20867122	.	G	GGGCGGCGGC	1169.73	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;QD=44.99;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	20870579	rs13013489	G	A	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:39,97:0.71:136
chr2	20871190	rs4666457	A	C	8640.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr2	21224853	rs1801695	C	T	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:81,212:0.72:293
chr2	21225281	rs1042034	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=1.438;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr2	21231524	rs676210	G	A	6448.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:90,298:0.77:388
chr2	21232195	rs693	G	A	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=2.168;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:387,118:0.23:505
chr2	21232803	rs584542	T	C	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.49;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	21232803	.	TG	CA,CG	1173	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=26;MQ=60.0;NF=13,50;NR=13,53;PP=240,1173;QD=11.2872259562;SC=TGCTCAAGAATGTCATTTATT;SbPval=0.56;Source=Platypus;TC=106;TCF=52;TCR=54;TR=26,103;WE=21232812;WS=21232793;set=Platypus	GT:AF:DP	0/1:0.25:106
chr2	21232804	rs1041968	G	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-1.799;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:152,38:0.20:190
chr2	21235475	rs568413	T	C	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	21236482	rs488329	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	21237544	rs673548	G	A	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,51:0.69:74
chr2	21250914	rs679899	G	A	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=0.318;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:13,45:0.78:58
chr2	21252365	rs67556837	GAGGA	G	665.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-1.172;QD=18.49;ReadPosRankSum=-0.709;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	21255573	rs10701091	C	CCATCT	2010.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	21263900	rs1367117	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:93,42:0.31:135
chr2	21265518	rs12714264	A	T	222.31	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr2	21266774	rs17240441	GGCAGCGCCA	G	768.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=3.745;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.415;QD=12.01;ReadPosRankSum=-0.180;SOR=1.205;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr2	23919375	rs3795942	C	T	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	23925980	rs12466745	T	C	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	23926350	rs79860558	C	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr2	23926506	rs77064076	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr2	23926659	rs3795948	T	C	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-1.897;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:477,116:0.20:593
chr2	23929321	rs143608596	C	CCTAA	5990.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:49,134:0.73:183
chr2	24009163	rs9636434	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.905;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr2	24042550	rs2879639	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	24055058	rs10432637	G	C	21175.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,829:1.00:829
chr2	24108652	rs7579201	T	C	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr2	24110657	rs75512051	A	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr2	24110911	rs34093830	G	GA	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.708;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:65,28:0.30:93
chr2	24194314	rs1533440	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	24194390	rs138973358	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	24246175	rs12989842	C	T	3667.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:55,153:0.74:208
chr2	24246449	.	G	A	4849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.01;ReadPosRankSum=-0.257;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:84,219:0.72:303
chr2	24246679	rs925228	A	G	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:17,77:0.82:94
chr2	24255862	rs10179142	C	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	24262060	rs3731620	G	A	1478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.853;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:256,98:0.28:354
chr2	24272657	rs111634163	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=0.216;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr2	24276736	rs11125393	T	C	1766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.234;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:257,110:0.30:367
chr2	24277104	rs12469126	A	G	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:204,68:0.25:272
chr2	24283853	rs13016301	A	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=1.185;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr2	24300563	rs10209238	T	C	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=2.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.763;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:286,84:0.23:370
chr2	24300740	rs10194831	C	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.758;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	24306107	rs70944712	C	CT	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.950;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:66,27:0.29:93
chr2	24307209	rs72049316	CACAGGGCAGGGCAGGGCAGGACAGG	C	4098.73	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:89,195:0.69:284
chr2	24307250	rs36207095	G	A	2436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=2.131;MLEAC=1;MLEAF=0.500;MQ=62.58;MQRankSum=-6.815;QD=8.15;ReadPosRankSum=-6.911;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:211,88:0.29:299
chr2	24307260	.	A	ACAGGGCAGGG	2338.73	.	AC=1;AF=0.500;AN=2;DP=438;set=Intersection	GT:AD:AF:DP	0/1:218,88:0.29:306
chr2	24338428	rs1056123	T	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=1.971;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr2	24342505	rs1056122	T	C	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.094;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:194,51:0.21:245
chr2	24342532	rs1134516	G	A	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.697;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.108;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:249,66:0.21:315
chr2	24343867	rs67397664	ACTTT	A	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	24345196	.	C	CA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.350;QD=2.99;ReadPosRankSum=0.240;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	24345562	rs7592020	C	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=2.093;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr2	24358001	rs12329297	G	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.854;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.423;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr2	24358160	rs12329043	A	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.48;ReadPosRankSum=-1.611;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	24369674	rs11693860	C	T	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=1.004;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:310,108:0.26:418
chr2	24384424	rs4665667	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:95,32:0.25:127
chr2	24387178	rs113322110	G	GC	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:64,19:0.23:83
chr2	24388096	rs4665668	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.053;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr2	24390517	rs2288072	G	A	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.076;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:250,70:0.22:320
chr2	24395269	rs918802	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.22;ReadPosRankSum=0.566;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	24395294	rs918803	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.736;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	24395506	rs889830	T	C	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=2.334;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:55,24:0.30:79
chr2	24398281	rs2042467	T	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:70,19:0.21:89
chr2	24398446	rs2042468	A	T	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-0.658;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:125,33:0.21:158
chr2	24398454	rs116450336	TG	AA	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.301;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:114,27:0.19:141
chr2	24402127	rs61193015	C	CAA	530.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr2	24426438	rs112277321	C	G	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	24432211	rs2303293	C	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.674;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:79,33:0.29:112
chr2	24432620	rs2303294	A	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.250;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:70,15:0.18:85
chr2	24432667	rs2303295	C	G	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.473;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:157,63:0.29:220
chr2	24439048	rs3731625	A	G	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:34,115:0.77:149
chr2	24440997	rs2551183	A	T	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	24475205	rs4450560	T	C	7340.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	24484150	rs4665680	T	C	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	24498839	rs4411652	T	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	24507757	.	ATTTTT	A	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=14.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=2.790;SOR=2.679;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr2	24507806	rs60485384	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	24521493	rs7559133	C	T	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	24521766	rs6707600	C	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	24524958	rs7603997	C	T	4068.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:70,186:0.73:256
chr2	24549477	rs141237068	G	A	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr2	24550867	.	CAA	C,CA	3348.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=0.769;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.715;QD=13.08;ReadPosRankSum=1.463;SOR=0.823;set=HC	GT:AD:AF:DP	1/2:27,63,166:0.25,0.65:256
chr2	24896389	rs4665712	T	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	24905927	rs11125744	G	C	8178.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr2	24933689	rs7593430	A	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	24952740	rs11439247	C	CT	2913.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	24974945	rs11125763	T	G	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	25022442	rs34475213	TA	T	143.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=13.07;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:2,9:0.82:11
chr2	25037042	rs1003064	G	A	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	25039804	rs2099505	G	A	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	25040423	rs10178420	G	A	2370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=2.739;QD=17.43;ReadPosRankSum=1.280;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:29,107:0.79:136
chr2	25046090	rs1127568	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	25046355	rs4665273	T	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=37.42;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	25046361	rs5829941	A	ATT	922.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;QD=35.49;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	25047408	rs7604576	A	G	4812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.26;ReadPosRankSum=-2.147;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:79,217:0.73:296
chr2	25047484	rs1814391	G	A	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.821;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:124,40:0.24:164
chr2	25048847	rs2289090	A	G	7223.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	25050977	rs7566416	T	C	6555.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	25053828	rs1056074	T	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.749;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr2	25059745	rs77760734	T	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.063;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr2	25061810	rs377483153	AT	A	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.544;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.008;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:43,26:0.38:69
chr2	25064079	rs2241757	G	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	25064157	rs2241758	G	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-0.780;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:59,9:0.13:68
chr2	25064193	rs2241759	G	A	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:17,76:0.82:93
chr2	25064279	.	T	C	2627.77	.	AC=1;AF=0.500;AN=2;DP=192;set=Intersection	GT:AD:AF:DP	0/1:57,127:0.69:184
chr2	25065274	rs41281519	T	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:328,128:0.28:456
chr2	25100738	rs10865315	C	A	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=2.138;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:129,47:0.27:176
chr2	25100902	rs2033656	C	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:129,53:0.29:182
chr2	25141434	rs61732745	G	A	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.687;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:439,118:0.21:557
chr2	25141538	rs11676272	A	G	4883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=1258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=1.224;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:920,332:0.27:1252
chr2	25194741	rs7593864	G	A	26423.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.099;ClippingRankSum=0.000;DB;DP=1019;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.01;ReadPosRankSum=1.637;SOR=0.276;set=HC	GT:AD:AF:DP	1/1:1,1015:1.00:1016
chr2	25314186	rs2918630	T	C	7538.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr2	25458546	rs2304429	C	T	4116.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:75,192:0.72:267
chr2	25462327	rs72810046	C	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.036;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:86,19:0.18:105
chr2	25463483	rs2289195	G	A	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.166;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:131,55:0.30:186
chr2	25466888	rs2289093	G	T	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	25469502	rs2276598	C	T	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=3.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=1.952;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:328,96:0.23:424
chr2	25469913	rs2276599	C	T	11591.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr2	25472784	rs11681447	C	T	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	25551692	rs12995245	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr2	25642294	rs17745893	T	C	3497.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:48,166:0.78:214
chr2	25655772	rs7583475	T	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-0.621;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:143,35:0.20:178
chr2	25656880	rs1395949	C	G	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	25656889	rs11451153	G	GT	475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.181;QD=5.66;ReadPosRankSum=-0.903;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:46,38:0.45:84
chr2	25754235	rs539879	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr2	25830370	rs146556681	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr2	25875401	rs137982132	T	TAA	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.222;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=19.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=1.069;SOR=2.293;set=HC	GT:AD:AF:DP	0/1:252,80:0.24:332
chr2	25973060	rs33994557	C	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:276,103:0.27:379
chr2	25973309	rs10178552	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.506;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:61,21:0.26:82
chr2	25994412	rs71399322	A	AG	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.000;QD=1.64;ReadPosRankSum=2.376;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:324,94:0.22:418
chr2	26022277	rs34816614	T	C	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.081;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:233,91:0.28:324
chr2	26082046	rs34236477	GT	G	202.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr2	26082057	rs13422450	T	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	26082212	rs13425195	T	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:42,9:0.18:51
chr2	26161226	rs11388254	C	CA	604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=0.382;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:35,48:0.58:83
chr2	26174882	rs41285967	T	C	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.609;QD=3.40;ReadPosRankSum=0.417;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:90,34:0.27:124
chr2	26203678	rs1465878	T	C	16530.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:2,648:1.00:650
chr2	26204640	rs6721440	G	A	17080.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,643:1.00:643
chr2	26321526	rs11678157	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=2.531;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr2	26350136	rs2289022	G	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.262;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr2	26357748	rs2243834	G	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-1.818;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:148,46:0.24:194
chr2	26399214	rs4665830	G	A	2713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DB;DP=827;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-1.110;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:623,199:0.24:822
chr2	26405985	rs10779956	A	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:88,27:0.23:115
chr2	26407937	rs181971256	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.931;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr2	26408064	rs4665833	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	26415088	rs34898931	TA	T	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.757;QD=5.19;ReadPosRankSum=-0.405;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:30,33:0.52:63
chr2	26415429	rs5001914	A	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-2.466;QD=3.56;ReadPosRankSum=0.903;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr2	26416301	rs7582341	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr2	26417533	rs1865324	C	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	26420708	rs13387855	T	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=0.315;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:152,31:0.17:183
chr2	26455002	rs35746418	C	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr2	26455127	rs11552518	G	A	2749.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:56,131:0.70:187
chr2	26457267	rs3892649	T	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr2	26462093	rs12987980	A	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	26467347	rs62128457	C	A	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:47,106:0.69:153
chr2	26477125	rs147970487	G	GACT	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	26501953	rs7604564	C	A	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:11,59:0.84:70
chr2	26502875	rs1056389	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	26505858	rs17528590	A	G	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:20,67:0.77:87
chr2	26507724	rs17528653	T	C	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr2	26512733	rs1056632	T	G	5472.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:78,258:0.77:336
chr2	26512957	rs1056471	G	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	26536299	rs11886746	C	G	14507.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr2	26537499	rs10187359	A	C	16114.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:1,628:1.00:629
chr2	26587076	rs11674089	G	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	26590084	rs6748996	T	G	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr2	26590118	rs6731447	C	T	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	26607992	rs934280	T	C	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	26609469	rs7585892	G	A	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	26647277	rs7423300	T	G	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	26652671	rs4356622	A	G	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	26653457	rs4450561	G	A	2383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.727;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:419,163:0.28:582
chr2	26663187	.	T	TTG	860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=2.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.709;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:28,48:0.63:76
chr2	26667130	rs3795958	A	G	4666.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:54,218:0.80:272
chr2	26667615	rs939820	T	C	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	26671092	rs34461558	C	CA	992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.183;QD=6.75;ReadPosRankSum=1.490;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:62,85:0.58:147
chr2	26671544	rs4072407	A	G	2594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=-0.569;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:44,126:0.74:170
chr2	26673640	.	C	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-3.690;QD=4.23;ReadPosRankSum=1.404;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr2	26673645	.	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-3.252;QD=5.57;ReadPosRankSum=1.141;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr2	26673652	.	G	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-2.878;QD=7.63;ReadPosRankSum=1.279;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	26673658	.	T	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-2.458;QD=8.44;ReadPosRankSum=0.396;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr2	26676322	rs1402962	A	G	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	26677810	rs2280516	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr2	26698682	rs6712188	G	T	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	26699126	rs4335905	C	G	7806.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr2	26699855	rs2272069	G	C	11132.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr2	26700248	rs56284635	C	T	6646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=1.940;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:101,300:0.75:401
chr2	26700700	rs4665855	G	A	10499.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr2	26700790	.	T	C	78.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,9:0.18:49
chr2	26700819	rs55806442	TGG	T	1258.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	26702057	rs10714255	GT	G	1040.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	26724442	rs7589019	A	G	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.077;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=8.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.055;SOR=2.266;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chr2	26724725	rs6547079	T	G	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	26726692	.	G	A	7348.77	.	AC=1;AF=0.500;AN=2;DP=483;set=Intersection	GT:AD:AF:DP	0/1:146,337:0.70:483
chr2	26726752	rs884390	G	A	2196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.151;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:391,153:0.28:544
chr2	26733500	rs939817	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:280,109:0.28:389
chr2	26739423	rs11687696	T	C	2999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.876;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:441,192:0.30:633
chr2	26739526	rs55682147	A	G	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,58:0.71:82
chr2	26741961	rs13031859	G	A	9811.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:191,456:0.70:647
chr2	26750557	rs10865425	T	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	26750645	rs1879760	G	A	8162.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:3,325:0.99:328
chr2	26781247	rs4665880	G	C	14677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DB;DP=954;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.597;QD=15.50;ReadPosRankSum=-1.290;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:250,697:0.74:947
chr2	26795217	rs59491712	GT	G	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-1.533;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr2	26795235	rs13004284	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.156;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr2	26798893	rs13002673	A	T	7235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=2453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=3.179;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:1865,570:0.23:2435
chr2	26799031	rs2272464	G	A	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.616;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:355,102:0.22:457
chr2	26799124	rs1148953	C	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr2	26800422	rs1053807	G	A	6883.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:128,319:0.71:447
chr2	26801586	rs1148956	G	A	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:36,116:0.76:152
chr2	26802392	rs2272467	A	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.458;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr2	26804008	rs744538	A	G	146.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	26804122	rs744539	T	G	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:99,39:0.28:138
chr2	26804143	rs744540	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:155,58:0.27:213
chr2	26804218	rs935171	G	A	16961.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,666:1.00:666
chr2	26804247	rs935172	T	C	2642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.332;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:541,189:0.26:730
chr2	26818006	rs1148962	T	C	8562.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:8,363:0.98:371
chr2	26818021	rs1148963	C	T	10725.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr2	26846282	rs1615551	T	C	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	26951449	rs1663002	G	A	8876.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr2	26997031	rs13007156	G	A	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=1.709;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:344,106:0.24:450
chr2	27157400	rs920436	A	G	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	27163044	rs3739085	T	C	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:36,107:0.75:143
chr2	27164806	rs3820823	G	A	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:15,56:0.79:71
chr2	27167784	rs3739088	C	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.489;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr2	27169637	rs3835821	TC	T	2645.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:20,78:0.80:98
chr2	27169842	rs11126784	C	A	7823.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:118,358:0.75:476
chr2	27246285	rs10865456	C	T	8914.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr2	27249245	rs3754733	A	G	7386.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:115,347:0.75:462
chr2	27259794	rs13021112	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,35:0.92:38
chr2	27260469	rs1124649	G	A	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-1.431;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:399,113:0.22:512
chr2	27261329	rs11690454	A	G	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	27262763	rs146244277	GGGA	G	8411.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:4,317:0.99:321
chr2	27263122	rs1866654	T	C	10845.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:118,480:0.80:598
chr2	27276202	rs3806520	G	A	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:27,100:0.79:127
chr2	27279416	rs2384570	A	G	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	27280092	rs6711384	T	A	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:37,86:0.70:123
chr2	27280127	rs6721395	G	A	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:57,164:0.74:221
chr2	27290525	rs11681145	A	G	9829.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:148,451:0.75:599
chr2	27290565	.	C	CAGGCCAGGTTCTTTAAGCCTAGTTGGG	1808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.751;ClippingRankSum=0.000;DP=433;ExcessHet=3.0103;FS=3.273;MLEAC=1;MLEAF=0.500;MQ=61.12;MQRankSum=13.323;QD=6.55;ReadPosRankSum=-0.131;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:212,64:0.23:276
chr2	27291661	rs7575465	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr2	27292651	rs10865461	T	C	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr2	27293150	rs1053609	G	T	6464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=-1.996;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:111,300:0.73:411
chr2	27302165	rs2289360	T	C	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:49,156:0.76:205
chr2	27303755	rs2736976	A	G	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	27307769	rs2304682	G	C	5585.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:93,263:0.74:356
chr2	27315252	rs2304681	G	A	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=1.195;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:504,158:0.24:662
chr2	27319826	rs9677784	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	27323385	rs1131375	C	T	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.878;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:150,51:0.25:201
chr2	27323468	rs4665371	A	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	27324036	rs1057394	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr2	27324340	.	G	A	1797	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=4;HapScore=2;MMLQ=27;NF=21;NR=35;SC=CTCTGGGCCCGGGGGCATCTC;Source=Platypus;TCF=56;TR=56;WS=27324330;set=Platypus	GT:AD:AF:DP	1/0:55,56:0.50:111
chr2	27324354	.	C	T	1797	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=26;MQ=58.05;NF=14;NR=27;PP=1797;QD=44.6773466475;SC=GCATCTCCTTCAGCCTCTGCC;SbPval=0.05;Source=Platypus;TC=117;TCF=63;TCR=54;TR=41;WE=27324362;WS=27324330;set=Platypus	GT:AD:AF:DP	1/0:76,41:0.35:117
chr2	27324724	rs2384571	G	C	8589.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:161,398:0.71:559
chr2	27324751	rs2384572	G	T	9474.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:200,438:0.69:638
chr2	27327369	rs74429515	T	C	1355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.528;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:314,101:0.24:415
chr2	27351279	rs1866561	G	A	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:41,120:0.75:161
chr2	27351948	rs6715286	T	G	15133.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:1,586:1.00:587
chr2	27354173	rs11126874	C	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	27355454	rs4665948	A	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	27359887	rs11121	C	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr2	27424496	rs1006898	G	A	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	27424636	rs1395	G	A	9650.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:132,429:0.76:561
chr2	27426362	rs2580761	G	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr2	27426514	rs1275521	G	C	9457.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr2	27428147	rs1298361	A	G	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	27428295	rs1275524	A	G	37645.77	.	AC=2;AF=1.00;AN=2;DB;DP=1469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,1462:1.00:1462
chr2	27428702	rs1275525	A	C	718.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.78;ReadPosRankSum=0.383;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr2	27428815	rs1275526	C	G	6975.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr2	27428877	rs1275527	C	G	14110.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.612;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.97;ReadPosRankSum=1.579;SOR=0.408;set=HC	GT:AD:AF:DP	1/1:1,564:1.00:565
chr2	27435250	rs1275533	A	G	7038.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr2	27435374	rs11608	G	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:53,151:0.74:204
chr2	27438710	rs11126918	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-1.086;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	27440785	rs1275536	C	T	25674.77	.	AC=2;AF=1.00;AN=2;DB;DP=995;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,978:1.00:978
chr2	27445315	rs3214689	G	GT	878.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.385;QD=3.41;ReadPosRankSum=-0.538;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:204,54:0.21:258
chr2	27449293	rs7593448	C	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:56,23:0.29:79
chr2	27460968	rs1141313	A	G	4307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=1210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.102;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:888,316:0.26:1204
chr2	27461100	.	T	G	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;ClippingRankSum=0.000;DP=327;ExcessHet=3.0103;FS=5.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.824;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:261,56:0.18:317
chr2	27462076	rs3739092	C	T	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:348,135:0.28:483
chr2	27462405	rs2014252	T	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr2	27481460	rs58965570	C	T	31.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:35,6:0.15:41
chr2	27505782	rs62130709	C	T	1222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=1.079;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:274,93:0.25:367
chr2	27522543	rs141577308	C	CCTAT	6204.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.212;QD=41.36;ReadPosRankSum=1.366;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:4,146:0.97:150
chr2	27528692	rs4665963	T	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=2.063;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:172,37:0.18:209
chr2	27532870	rs62130714	A	G	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.681;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:211,62:0.23:273
chr2	27535311	rs5830041	T	TG	25561.73	.	AC=2;AF=1.00;AN=2;DB;DP=722;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.55;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,719:1.00:719
chr2	27549833	rs35568684	CA	C	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=1.568;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr2	27550967	rs1049817	A	G	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:146,59:0.29:205
chr2	27556721	rs3739095	G	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:128,46:0.26:174
chr2	27558252	rs11684134	A	G	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-2.100;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:129,42:0.25:171
chr2	27558941	.	G	A	3476.77	.	AC=1;AF=0.500;AN=2;DP=232;set=Intersection	GT:AD:AF:DP	0/1:55,158:0.74:213
chr2	27587922	rs35891906	CT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.458;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	27589810	rs2280737	T	C	2314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.663;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:437,163:0.27:600
chr2	27592423	rs7602534	C	T	1615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.565;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:412,130:0.24:542
chr2	27595756	rs1528533	G	C	33.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:21,4:0.16:25
chr2	27597190	rs35440914	A	AT	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.527;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:113,32:0.22:145
chr2	27597805	rs3215365	CTT	C	202.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,8:0.20:40
chr2	27598097	rs4665972	T	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:55,18:0.25:73
chr2	27599132	rs12475426	G	A	1928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.978;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=1.250;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:529,152:0.22:681
chr2	27600239	rs13472	G	A	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=2.428;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:363,100:0.22:463
chr2	27606098	rs2384629	A	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	27656822	rs3214499	G	GA	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.017;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:158,23:0.13:181
chr2	27657681	rs77005271	C	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-1.363;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:103,27:0.21:130
chr2	27659491	rs780102	T	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:75,49:0.40:124
chr2	27659832	.	C	CT	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.240;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:187,48:0.20:235
chr2	27663215	rs1260341	T	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.264;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:107,28:0.21:135
chr2	27663416	rs1260342	G	T	1999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.480;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:298,128:0.30:426
chr2	27665361	rs780112	C	G	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DB;DP=721;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-1.703;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:570,143:0.20:713
chr2	27667297	rs4803	A	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.462;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:85,31:0.27:116
chr2	27667520	rs10635082	T	TTTTG	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=1.471;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr2	27669341	rs11333597	AT	A	792.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:99,34:0.26:133
chr2	27669365	rs11430923	G	GT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.554;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr2	27670307	rs11126999	G	A	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-1.355;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:235,65:0.22:300
chr2	27676287	rs56076827	A	T	1555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.520;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:318,109:0.26:427
chr2	27681598	rs780106	A	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr2	27684734	rs780107	A	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.141;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=4.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.243;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:127,25:0.16:152
chr2	27685388	rs780110	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=2.493;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr2	27688601	rs1647276	C	T	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-0.949;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:221,85:0.28:306
chr2	27706640	rs2272417	T	C	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=6.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.251;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:169,69:0.29:238
chr2	27708007	.	TA	T	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.628;QD=1.53;ReadPosRankSum=1.141;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:117,43:0.27:160
chr2	27715207	rs8395	T	A	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.461;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.650;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:81,24:0.23:105
chr2	27715416	rs2303369	C	T	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.102;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:248,72:0.23:320
chr2	27721971	rs813592	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:126,41:0.25:167
chr2	27722416	rs1260320	G	A	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.342;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:147,57:0.28:204
chr2	27728777	rs2293572	C	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:91,31:0.25:122
chr2	27729480	rs2293571	G	A	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=1.125;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:356,117:0.25:473
chr2	27730940	rs1260326	T	C	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=1.463;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:200,66:0.25:266
chr2	27801403	rs1919125	C	G	15520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.71;ReadPosRankSum=-0.905;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:179,402:0.69:581
chr2	27801418	rs1919126	C	A	15589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.89;ReadPosRankSum=-2.848;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:158,401:0.72:559
chr2	27801493	rs1919127	T	C	7236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=-0.363;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:110,336:0.75:446
chr2	27801759	rs1919128	A	G	6667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.07;ReadPosRankSum=-0.727;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:73,296:0.80:369
chr2	27803279	rs145678525	C	T	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.205;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.180;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:231,60:0.21:291
chr2	27804432	rs28381983	T	C	12550.77	.	AC=1;AF=0.500;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	0/1:241,555:0.70:796
chr2	27806793	.	G	GT	70	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=23;MQ=60.42;NF=1;NR=2;PP=70;QD=32.0;SC=TTTTTCTAAGGTTCTTTTGTG;SbPval=0.23;Source=Platypus;TC=12;TCF=1;TCR=11;TR=3;WE=27806801;WS=27806783;set=Platypus	GT:AD:AF:DP	0/1:9,3:0.25:12
chr2	27830990	rs6547734	G	T	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr2	27838058	rs11127071	C	A	3676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-0.803;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:60,175:0.74:235
chr2	27839107	rs6737921	T	C	5483.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:100,260:0.72:360
chr2	27851120	rs12615690	T	C	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	27851918	rs3749147	G	A	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:33,105:0.76:138
chr2	27852117	rs60089768	A	AGGTCTT	3787.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.169;QD=27.65;ReadPosRankSum=1.310;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:42,95:0.69:137
chr2	27852118	rs58737572	A	C	3796.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.503;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.76;ReadPosRankSum=1.054;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:43,89:0.67:132
chr2	27852637	rs6547738	A	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr2	27854524	rs34502053	G	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr2	27857992	rs4666009	T	A	7750.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:133,357:0.73:490
chr2	27858167	rs10665947	C	CTTTTTTTT	1327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.445;QD=13.69;ReadPosRankSum=1.779;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:44,53:0.55:97
chr2	27861707	rs11692692	G	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=-0.815;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr2	27863945	.	T	C	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.89;ReadPosRankSum=0.789;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	27884878	rs1569152	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	27887034	rs9678851	C	A	2436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.262;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:385,159:0.29:544
chr2	27892023	rs2272406	A	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr2	27905391	.	CTT	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-1.710;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	27910706	rs13023094	A	C	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr2	27995781	rs3736594	A	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	28070071	rs6547811	T	A	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	28268467	rs6738887	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	28464435	rs6737817	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	28615803	.	CAGAA	C	7244.73	.	AC=1;AF=0.500;AN=2;DP=282;set=Intersection	GT:AD:AF:DP	0/1:71,179:0.72:250
chr2	28615812	.	GGAGAGA	G	1160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=9.815;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.592;QD=5.14;ReadPosRankSum=-2.007;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:180,46:0.20:226
chr2	28626860	rs11900743	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr2	28634790	rs12624279	G	A	3690.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:53,170:0.76:223
chr2	28718897	rs4665423	A	G	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	28748857	rs4666085	T	C	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr2	28748916	rs10181687	A	C	3971.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:61,183:0.75:244
chr2	28752498	rs6728486	T	C	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	28752555	rs4473343	T	C	11396.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr2	28752727	rs6710800	C	G	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	28752741	rs6725577	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	28761257	rs7589169	A	G	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	28761282	rs7589254	A	G	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	28761981	rs6753929	G	C	7775.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:131,363:0.73:494
chr2	28771452	rs56019402	CTA	C	2400	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.334;QD=30.38;ReadPosRankSum=1.065;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:6,73:0.92:79
chr2	28771579	rs72789777	C	T	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:38,97:0.72:135
chr2	28771624	rs11680168	T	G	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	28771897	rs11680304	T	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr2	28773037	rs61081790	G	GT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.144;QD=4.61;ReadPosRankSum=-0.282;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	28785754	rs7560628	G	C	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	28788428	rs34237604	AG	A	186.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	28789643	rs10186460	T	C	16256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=983;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=0.009;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:239,738:0.76:977
chr2	28795893	rs13005799	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-0.650;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	28795899	rs13007288	C	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-0.650;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	28795962	rs13005854	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.021;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr2	28816425	rs10176136	T	C	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	28816814	rs11462230	C	CTTT	3300.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.62;ReadPosRankSum=-0.337;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:18,106:0.85:124
chr2	28816948	rs4665429	C	T	16131.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,630:1.00:630
chr2	28821662	rs7557359	C	T	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=4.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.345;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:77,31:0.29:108
chr2	28824303	rs1106882	C	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.506;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	28824793	rs7601771	C	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.584;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:387,74:0.16:461
chr2	28824940	rs67381370	G	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr2	28840691	rs1534478	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:121,45:0.27:166
chr2	28841049	rs1881255	G	A	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.102;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-2.105;SOR=1.427;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr2	28847806	rs11127181	C	G	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.015;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:212,73:0.26:285
chr2	28849435	rs10186023	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:22,68:0.76:90
chr2	28849461	rs149607211	CCCCGAGCTCCTTGCT	C	107.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.576;SOR=2.212;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chr2	28849473	rs899149	T	C	656.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr2	28853352	rs6713038	C	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr2	28853377	rs6731155	T	C	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.640;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:59,24:0.29:83
chr2	28854958	rs2199619	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=1.073;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:230,42:0.15:272
chr2	28855918	rs34314459	A	AG	13103.73	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr2	28856047	rs3752901	T	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr2	28863738	rs56350389	A	G	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-0.288;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:288,89:0.24:377
chr2	28865685	rs112887987	C	T	7402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.640;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:146,346:0.70:492
chr2	28865760	rs2272387	T	C	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=1.214;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:501,138:0.22:639
chr2	28975107	rs2276547	G	C	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr2	29001691	rs1128416	A	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:7,36:0.84:43
chr2	29041877	rs13009357	T	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-1.311;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:16,27:0.63:43
chr2	29045323	rs4436918	C	T	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	29052256	rs12998251	T	C	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	29087799	rs13030945	C	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr2	29087814	rs55785599	C	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:83,28:0.25:111
chr2	29092679	rs4233729	T	C	2298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-0.597;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:403,151:0.27:554
chr2	29092850	rs4666122	G	T	2103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.295;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:512,160:0.24:672
chr2	29129300	rs36066576	AT	A	999.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.822;QD=2.82;ReadPosRankSum=3.812;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:225,130:0.37:355
chr2	29129418	rs11688605	A	G	1469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.748;QD=3.47;ReadPosRankSum=0.986;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:315,108:0.26:423
chr2	29135468	rs6715296	C	G	7235.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	29136489	rs4666132	G	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.134;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:177,28:0.14:205
chr2	29136623	rs4666133	T	C	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.435;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:188,60:0.24:248
chr2	29136653	rs4666134	T	C	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-1.238;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:129,35:0.21:164
chr2	29136685	rs12472068	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-1.311;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr2	29140711	rs4389288	G	A	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.419;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:170,72:0.30:242
chr2	29145663	rs61402912	G	GTT	120.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=15.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	29145725	rs9653591	G	T	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	29152456	rs1140697	A	G	4326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=-0.809;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:75,205:0.73:280
chr2	29158613	rs70958225	CAAAAA	C	461.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.48;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	29161010	rs4233731	G	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	29169612	rs3087649	T	C	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	29221040	rs72786173	C	T	3870.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:66,179:0.73:245
chr2	29226498	rs12613325	G	A	7004.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:113,326:0.74:439
chr2	29226512	rs12623297	A	G	5331.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:91,245:0.73:336
chr2	29226559	rs12619829	C	T	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:41,98:0.71:139
chr2	29239942	rs11685375	T	G	4307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.57;ReadPosRankSum=0.313;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:39,193:0.83:232
chr2	29240060	rs11127202	A	G	5897.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:76,269:0.78:345
chr2	29240582	rs66482868	T	C	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:38,92:0.71:130
chr2	29240673	rs35166194	G	A	7791.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:137,365:0.73:502
chr2	29240686	rs34261417	A	C	8221.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:152,380:0.71:532
chr2	29240783	rs1109758	A	G	7319.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr2	29249903	rs11884174	G	C	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:9,43:0.83:52
chr2	29268375	rs2276551	A	C	2117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.723;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:490,164:0.25:654
chr2	29274704	rs61749512	C	T	3618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DB;DP=1146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.886;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:872,272:0.24:1144
chr2	29274720	rs895591	A	G	2876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DB;DP=1004;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=2.663;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:772,227:0.23:999
chr2	29287708	rs10182566	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-0.966;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr2	29287926	rs139768554	C	CGCT	2485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.331;QD=8.97;ReadPosRankSum=0.073;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:202,75:0.27:277
chr2	29294629	rs34253433	C	T	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.394;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:558,135:0.19:693
chr2	29294754	rs17744093	G	C	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=2.103;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:212,74:0.26:286
chr2	29295016	rs10200693	A	G	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:161,70:0.30:231
chr2	29295676	rs13385188	G	A	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.574;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:317,85:0.21:402
chr2	29296870	rs62132765	C	T	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=3.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.151;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:233,96:0.29:329
chr2	29297068	rs35929540	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:210,50:0.19:260
chr2	29355303	rs4666167	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	29356669	rs3100232	A	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:150,56:0.27:206
chr2	29366830	rs3213947	A	G	2757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=0.587;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:51,129:0.72:180
chr2	29366875	rs3217572	C	CACAG	3696.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	29383374	rs2305450	G	A	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	29386646	rs10200936	G	C	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr2	29390299	rs11364047	AG	A	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.764;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.612;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:104,22:0.17:126
chr2	29416025	rs10625834	C	CATTG	803.27	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr2	29416366	rs1881421	G	C	6664.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:120,299:0.71:419
chr2	29416481	rs1881420	T	C	8268.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:148,372:0.72:520
chr2	29416572	rs1670283	T	C	15777.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr2	29419591	rs1670284	G	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.032;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:148,35:0.19:183
chr2	29420315	rs3738870	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr2	29430942	rs3832036	GTC	G	1986.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr2	29443929	.	G	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=4.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-2.406;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:159,39:0.20:198
chr2	29444076	rs1534545	G	T	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:36,78:0.68:114
chr2	29444095	rs1569156	C	T	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	29445157	rs76002034	G	C	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:39,77:0.66:116
chr2	29445458	rs3795850	G	T	2304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=-0.322;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:41,107:0.72:148
chr2	29446184	rs2276550	C	G	4495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=-0.179;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:60,210:0.78:270
chr2	29455267	rs2256740	A	G	6482.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:147,305:0.67:452
chr2	29498210	rs4589708	A	G	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	29519622	rs2272409	C	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	29525341	rs11127213	A	G	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=46.32;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	29525345	rs11127214	T	C	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=42.98;SOR=1.946;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	29541104	rs2276549	C	T	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	29543663	rs2293564	T	C	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	29754721	rs11689790	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:73,41:0.36:114
chr2	29755003	rs62131079	C	T	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,63:0.72:88
chr2	29917940	rs2256376	C	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	29940529	rs2246745	A	T	11001.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr2	30143499	rs4358080	G	C	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	30381505	rs1137288	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	30480196	rs6548005	C	G	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:11,63:0.85:74
chr2	30682360	rs829574	G	A	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:26,68:0.72:94
chr2	30775299	rs12053428	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr2	30791152	rs6749074	A	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=-0.064;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr2	30828792	rs2248777	G	A	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:52,92:0.64:144
chr2	30955528	rs2276567	C	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	30959262	rs509380	G	T	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	30968760	.	ATTTTT	A	1209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.24;ReadPosRankSum=1.821;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:4,36:0.90:40
chr2	30973825	rs1879283	C	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr2	30973913	rs62142187	A	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.511;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:109,35:0.24:144
chr2	30975961	rs62142192	G	T	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=1.902;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:171,51:0.23:222
chr2	30976058	rs2926304	C	T	4593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-1.554;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:79,215:0.73:294
chr2	30977073	rs485100	G	A	6027.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	30980940	rs508405	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:43,94:0.69:137
chr2	30986989	rs579016	G	T	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	31009977	rs1915125	G	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	31133939	rs2278079	G	C	3909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=-0.165;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:60,181:0.75:241
chr2	31135184	rs2288101	G	T	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:50,185:0.79:235
chr2	31188957	rs889896	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	31189236	rs2303324	G	A	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:24,84:0.78:108
chr2	31189304	rs2303323	T	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr2	31348216	rs140981178	T	C	5260.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:57,245:0.81:302
chr2	31360928	rs139115558	C	G	27694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=1687;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.584;QD=16.45;ReadPosRankSum=1.180;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:427,1257:0.75:1684
chr2	31401290	rs4952052	A	C	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	31410708	rs1822496	C	T	9607.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr2	31414807	rs1562022	C	G	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	31415967	rs7591444	T	C	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	31416213	rs11124248	T	C	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	31416305	rs11124249	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.93;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	31416309	rs11124250	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.48;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	31416317	rs12619774	C	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.29;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	31417222	rs140399169	A	G	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.085;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:132,44:0.25:176
chr2	31424885	rs11692905	C	T	8909.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr2	31457817	rs2236170	T	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	31467351	rs2295473	T	A	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	31483890	rs13028669	T	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr2	31484334	rs654650	G	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:27,84:0.76:111
chr2	31488965	rs619002	C	T	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:28,93:0.77:121
chr2	31565316	rs35235275	C	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.272;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr2	31567632	rs207454	T	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-1.806;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:116,31:0.21:147
chr2	31567743	rs566224	T	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	31569471	rs7599175	A	G	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	31570376	rs1366813	T	C	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	31570626	rs4952083	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.49;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	31570631	rs4952084	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	31571241	rs13415401	G	C	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	31571786	rs1884725	A	G	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	31572398	rs1429374	A	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	31572482	rs11408029	T	TG	2977.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.72;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	31587235	rs1018505	G	A	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	31588288	rs2365842	T	A	9560.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr2	31589654	rs13387204	T	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	31590759	rs2281550	C	T	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	31596955	rs4952086	G	A	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	31596963	rs4952087	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	31600146	rs10187719	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	31609448	rs477626	A	C	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	31611029	rs2073316	G	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	31611367	rs206847	T	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	31805619	rs619857	T	C	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	31805675	rs522638	A	G	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	31805706	rs523349	G	C	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	31805880	rs142200057	A	AG	15305.73	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr2	31806031	rs632148	C	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	32369901	rs2365556	T	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	32402636	rs4258846	C	T	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	32418808	rs212751	T	A	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	32434701	rs212685	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	32449871	rs376045897	ATTTT	A	4088.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=1.389;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	32449879	rs199998217	T	TAAA	2961.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.44;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	32460348	rs212714	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	32461493	rs55638726	T	TC	43.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	32466029	rs212721	A	G	2956.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.588;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=-0.578;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,118:0.99:119
chr2	32475109	rs455060	G	A	13423.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr2	32476390	rs408813	T	G	6663.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	32481793	rs11295492	AT	A	5026.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	32481795	rs59966205	T	A	5035.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	32667058	rs55734616	C	A	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=2.078;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	32667061	rs60955793	T	A	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	32667182	rs60197615	G	C	13431.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr2	32690109	.	AT	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DP=395;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.183;QD=0.44;ReadPosRankSum=2.961;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:310,71:0.19:381
chr2	32690253	.	A	AT	1133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=6.20;ReadPosRankSum=2.866;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:77,106:0.58:183
chr2	32706579	rs9646977	T	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	32712875	rs2366891	A	C	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	32713706	rs2366894	A	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	32724590	rs145668508	GTC	G	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=1.059;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:162,30:0.16:192
chr2	32733343	.	CTTTTTTTTTTTTT	C,CT	2654.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=6.177;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.23;ReadPosRankSum=1.313;SOR=1.674;set=HC	GT:AD:AF:DP	1/2:3,61,21:0.72,0.25:85
chr2	32749880	rs2710609	C	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	32749890	rs2710610	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	32749893	rs2710611	A	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	32749903	rs2710612	T	C	290.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.35;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	32757201	.	C	CGTGTGTGTGT	53.70	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr2	32822729	rs2583713	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	32822957	rs2710625	G	A	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:1,317:1.00:318
chr2	32855615	rs2710623	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	32860415	rs11124286	C	T	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	32959024	rs1551177	T	C	7013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=-0.480;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:90,315:0.78:405
chr2	32961691	rs17497801	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-1.533;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	32961745	rs10200333	T	A	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	32983526	rs2273665	C	T	4228.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:97,195:0.67:292
chr2	33172362	rs62135679	C	T	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	33335847	rs218226	C	T	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.035;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:210,65:0.24:275
chr2	33392911	rs6728094	G	A	6778.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr2	33407186	rs6759943	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	33407285	rs2367619	G	A	7447.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	33412077	rs1065324	G	A	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	33413640	rs6712473	G	T	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	33413949	rs4542826	G	A	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	33414009	rs3922572	T	A	784.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	33442549	rs2290449	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	33447202	rs2290448	C	T	12853.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr2	33525382	rs935996	A	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	33540138	rs2276591	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	33540172	rs3216704	A	AT	2044.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	33540248	rs1058840	G	A	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	33568137	rs5024713	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.915;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:83,25:0.23:108
chr2	33568191	rs5024712	T	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	33585796	rs4422143	T	C	14813.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,580:1.00:580
chr2	33586464	rs11442294	C	CT	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=1.751;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:11,42:0.79:53
chr2	33614187	rs642472	C	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.274;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr2	33622448	rs2367734	T	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	33622475	rs12053346	T	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	33623306	rs2034693	C	T	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr2	33623387	rs624060	AT	GC	10717.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	33623734	rs622716	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	33643739	.	T	TG	54.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.127;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr2	33643740	rs6724875	T	G	207.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-1.782;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,22:0.44:50
chr2	33744958	rs7597095	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr2	33745208	rs2305576	T	C	4697.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:94,226:0.71:320
chr2	33748913	rs6735997	A	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr2	33752152	rs10189430	G	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr2	33759395	rs35933402	C	T	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:47,168:0.78:215
chr2	33759563	rs74326828	G	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr2	33787976	rs10572554	CCTAA	C	2261.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	33824490	rs186792014	C	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:14,63:0.82:77
chr2	33952022	rs4670913	C	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	33952413	rs4477896	T	C	9883.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:148,450:0.75:598
chr2	33952456	rs2367810	C	G	18014.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr2	35696519	rs62143301	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	35696612	rs4670472	C	T	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	36605304	rs4670546	G	A	371.89	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr2	36605585	rs4670548	A	G	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	36605676	rs60204094	A	AT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.425;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	36726500	rs59890798	C	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.612;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:268,69:0.20:337
chr2	36737378	rs72866875	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr2	36739553	rs848526	T	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:21,66:0.76:87
chr2	36740643	rs2293254	C	G	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr2	36756288	rs711247	T	C	8200.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr2	36775315	rs2270333	C	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.496;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr2	36779144	rs10180760	T	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:95,24:0.20:119
chr2	36781401	rs1533946	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:67,28:0.29:95
chr2	36783127	rs10194100	T	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:115,34:0.23:149
chr2	36783215	rs10181664	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.494;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:197,54:0.22:251
chr2	36805676	rs2075226	A	G	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=1.200;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:134,51:0.28:185
chr2	36806021	rs2072534	G	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=3.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.325;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:205,45:0.18:250
chr2	36806051	rs2072533	A	G	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-1.805;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:102,29:0.22:131
chr2	36808350	rs848638	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:91,33:0.27:124
chr2	36808732	rs848637	T	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:114,45:0.28:159
chr2	36824956	rs5830430	G	GC	1314.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	36825137	rs1544655	G	A	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.460;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:320,84:0.21:404
chr2	36825170	rs2287104	T	C	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.375;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:296,86:0.23:382
chr2	36825330	rs11441122	C	CG	4041.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=36.74;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	36825359	.	G	GCCCCGC	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-0.217;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr2	36943338	rs4670597	C	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	36943419	rs4670598	T	C	7043.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr2	36994439	rs11124542	A	C	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:47,128:0.73:175
chr2	37000797	rs3770784	C	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	37000877	rs116154541	A	T	3398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.27;ReadPosRankSum=0.683;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:38,148:0.80:186
chr2	37001570	rs974964	C	T	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	37010574	rs3821147	G	A	6222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=0.257;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:127,297:0.70:424
chr2	37010734	rs191115478	G	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr2	37076474	rs13385893	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr2	37077015	rs723674	C	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	37078095	rs10668550	A	ATT	292.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=0.074;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr2	37078354	rs28593131	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-2.362;QD=2.90;ReadPosRankSum=-0.787;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr2	37078388	rs28701005	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-1.356;QD=6.61;ReadPosRankSum=2.515;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	37094945	rs2540923	A	G	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:12,82:0.87:94
chr2	37095139	rs6752845	G	C	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	37096970	rs2160379	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	37129618	rs148671880	A	ATAAT	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.67;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	37227797	rs62621396	C	G	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.795;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:418,116:0.22:534
chr2	37230888	rs2706811	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-3.397;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:89,24:0.21:113
chr2	37232927	rs139942041	GT	G	337.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.428;QD=4.22;ReadPosRankSum=0.798;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr2	37232929	rs369798714	T	G	346.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.434;QD=4.45;ReadPosRankSum=0.762;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr2	37234480	rs5830448	C	CT	80.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.253;QD=5.77;ReadPosRankSum=0.967;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	37255015	rs2540998	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.914;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr2	37280763	rs200413903	G	GA	1012.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=1.157;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,55:0.75:73
chr2	37280858	rs114920219	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=2.761;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	37285781	.	T	C	51.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr2	37287683	rs10191403	T	A	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.075;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:177,51:0.22:228
chr2	37299145	rs12621276	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.372;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:58,10:0.15:68
chr2	37302556	rs34545380	GA	G	1618.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.225;QD=20.23;ReadPosRankSum=0.498;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:1,79:0.99:80
chr2	37306343	rs6743906	G	A	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	37317869	rs4670654	C	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	37318041	rs4670655	A	G	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	37323460	rs12474977	G	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	37336403	rs2307469	G	C	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.168;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:165,74:0.31:239
chr2	37362474	rs4648204	A	G	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:37,10:0.21:47
chr2	37362555	rs2307479	T	G	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.173;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:213,62:0.23:275
chr2	37365251	.	CAAA	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.142;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	37365798	rs2307483	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr2	37373982	rs2307475	A	AT	4587.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	37402270	rs11569755	C	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr2	37402373	rs11569758	A	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr2	37410537	rs6544061	C	T	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	37414431	rs6724820	A	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,37:0.74:50
chr2	37415496	rs11124566	G	C	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	37428743	rs2540973	C	T	64.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	37438993	rs1137437	G	A	4018.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:59,184:0.76:243
chr2	37447465	rs11124567	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.32;ReadPosRankSum=-3.239;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	37447473	rs57004489	T	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.78;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	37447475	rs74177066	T	A	344.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.00;ReadPosRankSum=-1.790;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr2	37447627	rs35462755	C	CA	224.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr2	37456032	rs2098386	C	T	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	37458711	rs3213745	G	A	15603.77	.	AC=1;AF=0.500;AN=2;DB;DP=980;set=Intersection	GT:AD:AF:DP	0/1:254,717:0.74:971
chr2	37483772	rs2465485	T	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=23.55;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	37487307	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-0.228;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr2	37494591	rs2302650	A	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-1.474;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	37499406	rs2160394	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-1.394;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr2	37518045	rs10177176	G	C	8709.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:163,406:0.71:569
chr2	37543371	rs6544066	A	G	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.632;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:148,55:0.27:203
chr2	37586681	rs2302651	A	G	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	37595696	rs1468816	A	C	7525.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:100,340:0.77:440
chr2	37599688	rs2287094	A	G	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr2	37599963	rs4670696	A	C	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.28;ReadPosRankSum=0.687;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:21,77:0.79:98
chr2	37599988	rs4670697	G	T	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=6.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=-0.647;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,41:0.82:50
chr2	38178362	rs2197561	T	C	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:35,89:0.72:124
chr2	38179134	rs4670800	G	A	16430.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,635:1.00:635
chr2	38202502	rs2044447	A	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=-1.013;SOR=0.112;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr2	38208233	rs1446297	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	38208606	rs61676428	A	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	38218281	rs17021813	T	C	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.87;ReadPosRankSum=-1.493;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:10,62:0.86:72
chr2	38244417	rs114342890	G	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:16,54:0.77:70
chr2	38244818	rs11901988	A	C	2804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.50;ReadPosRankSum=-1.790;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:26,76:0.75:102
chr2	38244824	rs11891536	G	A	2567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.57;ReadPosRankSum=-1.032;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:23,61:0.73:84
chr2	38604219	rs180888623	G	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr2	38791446	rs77685703	G	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr2	38800334	rs3765001	A	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr2	38809162	rs2253519	C	T	1456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-0.591;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:17,65:0.79:82
chr2	38813157	rs76078344	C	G	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:10,51:0.84:61
chr2	38829562	rs142358609	G	A	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:22,65:0.75:87
chr2	38902926	rs12052751	T	C	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr2	38907327	rs35368702	AT	A	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr2	38956947	rs2272445	A	G	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	38975332	.	G	GT	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=8.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=1.380;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:78,29:0.27:107
chr2	38977371	rs3112183	C	T	8556.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr2	38977402	rs3134630	T	C	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	39006603	rs3112201	T	G	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	39025043	rs34207268	G	GA	322.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=-0.076;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr2	39025555	rs1530853	G	A	9816.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr2	39025632	rs1530852	A	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	39030074	rs13029406	C	T	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	39042639	rs3112138	G	A	10681.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr2	39045885	rs10176932	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	39050019	rs3112146	G	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	39050061	rs34582261	AT	A	3867.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	39050141	rs3770681	A	C	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr2	39065729	rs17494315	C	A	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	39070394	rs375562747	G	C	373.98	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr2	39075356	rs11124651	A	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	39082344	rs7598922	T	C	8732.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr2	39090696	rs3099999	T	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	39107879	.	A	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.934;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:135,23:0.15:158
chr2	39117117	rs7565111	G	A	6252.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	39185048	rs422854	C	T	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	39187190	rs6755527	T	C	9813.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr2	39187519	rs958412	A	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	39198966	rs2305516	A	G	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	39201052	.	AAT	A	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=9.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.401;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr2	39201073	rs141703594	CTA	C	90.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,7:0.16:44
chr2	39214821	rs2290445	A	C	128.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	39224351	rs1454223	G	T	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	39224615	rs5830551	G	GT	723.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	39233500	rs7577088	G	A	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	39251375	rs10634554	T	TCAC	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	39262068	rs10153761	C	T	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	39281730	rs997344	G	C	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	39406572	rs7566123	C	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	39440727	rs10196407	G	C	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	39452861	rs11124663	C	T	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	39479122	rs3770678	G	C	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	39494197	rs2302749	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	39494469	rs10865149	C	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	39507417	rs3755176	T	A	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	39514136	rs3755172	T	C	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	39514204	rs3755171	G	C	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	39526842	rs2111382	A	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	39542658	rs5830562	AT	A	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	39553271	rs3815594	A	G	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	39558928	rs6760382	G	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	39564620	rs1125839	C	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	39570427	rs3732053	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	39583446	rs8545	A	G	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	39944055	rs2540229	G	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	39993167	rs4670959	T	C	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	40006209	rs141370494	G	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-1.403;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:149,49:0.25:198
chr2	40006430	rs12620957	A	C	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	40006442	rs35761077	C	T	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	40006488	rs145441522	A	AGGGAGAGGGAGAGGGAGAGG	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.56;QD=44.67;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	40392313	rs434725	G	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	40402275	rs6734847	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	40403104	rs106706	A	G	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	40404839	rs433572	C	T	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	40564500	rs13406526	G	A	1885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=0.947;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:36,92:0.72:128
chr2	40564557	rs13406541	G	C	1854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=0.278;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:31,88:0.74:119
chr2	40655563	rs3838567	CCACACA	CCA,C	1651.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/1:0.96:72
chr2	42165754	rs10192292	C	T	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	42165961	rs7590930	T	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	42174733	rs28548998	A	G	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=0.453;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:279,73:0.21:352
chr2	42181051	rs3038317	GCACA	GCA,G	601.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	0/1:0.89:27
chr2	42275664	rs187184761	T	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr2	42275819	rs11897440	T	C	4204.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:61,200:0.77:261
chr2	42284884	rs1044305	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	42396722	rs7233	A	G	8495.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	42483860	rs78425039	C	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr2	42491951	rs6735571	C	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:51,14:0.22:65
chr2	42492238	rs147902234	C	CT	327.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr2	42510018	rs6736913	A	G	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	42513582	rs72798522	C	T	249.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.357;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.84;ReadPosRankSum=-0.636;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	42515388	rs10202624	A	G	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	42515501	rs10179237	C	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.042;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chr2	42544821	rs7558501	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	42560975	rs7572231	A	G	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=1.806;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:79,32:0.29:111
chr2	42719847	rs113015907	T	TG	12315.73	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.47;SOR=1.309;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr2	42719860	rs112592817	G	GC	14207.73	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=43.05;SOR=1.246;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr2	42795954	rs78106475	T	C	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	42806441	rs116367677	A	G	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-1.306;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:15,34:0.69:49
chr2	42836516	rs6720277	A	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	42922888	rs66547039	AT	A	289.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.091;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:7,26:0.79:33
chr2	42925079	rs148782944	TTTC	T	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.84;ReadPosRankSum=0.272;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	42931217	rs2304658	A	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	42935961	rs4953577	C	T	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	42935979	rs4953578	C	T	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	42989994	rs2278585	G	T	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.333;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:139,47:0.25:186
chr2	42990010	rs12617777	C	A	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.272;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:188,60:0.24:248
chr2	42990101	rs2278586	G	C	2390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=780;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.296;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:593,186:0.24:779
chr2	42990336	rs1992286	T	G	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-1.154;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:279,92:0.25:371
chr2	42990522	rs12712859	C	T	1978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.072;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:417,141:0.25:558
chr2	42996709	.	ATGTGTGTGTGTG	A,ATGTGTG	1631.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=61;set=Intersection	GT:AF:DP	1/2:0.80,0.20:44
chr2	42996759	rs34567167	AAGAG	A	3727.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	42996819	rs13413507	G	A	4583.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:72,207:0.74:279
chr2	42997614	rs2241850	G	A	4082.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:65,184:0.74:249
chr2	43011169	rs4953660	G	T	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:23,100:0.81:123
chr2	43015612	rs3816181	G	T	8022.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr2	43015719	rs3816183	T	C	13388.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr2	43015757	rs3816184	G	A	9574.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr2	43015814	rs62143190	G	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.266;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:97,28:0.22:125
chr2	43015902	rs3816185	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	43019730	rs2304656	A	G	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr2	43452183	rs7933	A	G	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	43452334	rs8098	G	A	2642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;ClippingRankSum=0.000;DB;DP=1094;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-2.294;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:858,229:0.21:1087
chr2	43452618	rs11675632	C	T	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.728;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:354,100:0.22:454
chr2	43452793	rs77160973	C	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.450;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:225,54:0.19:279
chr2	43455063	rs67278917	CCA	C	13664.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=3.099;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.229;QD=26.95;ReadPosRankSum=1.615;SOR=0.385;set=HC	GT:AD:AF:DP	1/1:6,501:0.99:507
chr2	43514036	rs11900952	G	A	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:54,108:0.67:162
chr2	43519977	rs35720761	C	T	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:50,130:0.72:180
chr2	43625078	rs7605661	T	C	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:15,92:0.86:107
chr2	43657510	rs35340152	T	A	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	43711523	rs998768	G	T	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:20,100:0.83:120
chr2	43732823	rs7578597	T	C	5596.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:86,260:0.75:346
chr2	43735713	rs6761129	C	T	4345.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:73,201:0.73:274
chr2	43768545	rs72790940	T	G	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=-0.764;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr2	43778857	rs34461850	GA	G,GAA	373.74	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	1/1:0.86:28
chr2	43787576	rs4337518	G	A	693.78	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr2	43793725	rs1158411	G	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:24,64:0.73:88
chr2	43793963	rs34512555	T	TAA	312.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.37;ReadPosRankSum=1.292;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr2	43797710	rs11904510	G	A	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,48:0.73:66
chr2	43798792	rs11884742	G	A	2741.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:38,128:0.77:166
chr2	43799070	rs3752355	C	T	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	43800174	rs11898207	A	G	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:61,138:0.69:199
chr2	43801712	rs11899823	A	G	7502.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:139,344:0.71:483
chr2	43802261	rs970175	C	A	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	43804229	rs13021894	T	C	8659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.01;ReadPosRankSum=0.990;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:119,390:0.77:509
chr2	43805608	rs6759861	C	G	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr2	43805739	rs61754256	C	T	3106.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:51,145:0.74:196
chr2	43817783	.	C	CA	84.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=59.73;MQRankSum=1.282;QD=8.45;ReadPosRankSum=0.524;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,8:0.80:10
chr2	43819139	rs17031095	A	G	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=-0.682;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:42,95:0.69:137
chr2	43871983	rs12105773	T	C	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:52,108:0.68:160
chr2	43902511	rs755862	G	C	2219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.35;ReadPosRankSum=-0.862;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:19,102:0.84:121
chr2	43903066	rs3828297	A	G	8046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=0.605;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:127,373:0.75:500
chr2	43903354	rs4952675	T	C	8198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=1.058;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:160,375:0.70:535
chr2	43903483	rs4952995	T	C	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:53,199:0.79:252
chr2	43905876	rs113794228	A	G	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.176;QD=10.56;ReadPosRankSum=-2.158;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr2	43921489	rs12616572	A	T	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=1.479;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	43926943	rs7606783	T	A	4610.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:88,208:0.70:296
chr2	43927459	rs12623703	C	G	12523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.462;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=-0.147;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:235,571:0.71:806
chr2	43931055	.	CTTTTTTTTTT	C	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.91;ReadPosRankSum=1.534;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	43931176	rs4953002	T	C	9429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.781;QD=15.59;ReadPosRankSum=0.058;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:156,449:0.74:605
chr2	43931321	rs4953003	G	A	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr2	43933354	rs9678037	C	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	43947760	rs10206389	T	C	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	43953664	rs7574334	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	43965705	rs28646121	T	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	43985940	rs7570252	C	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	43991310	rs10205936	C	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	43991357	rs7565517	A	C	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	44001139	rs17031488	C	T	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr2	44004010	rs2288709	T	C	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	44010620	rs3815995	G	A	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	44014301	rs3765000	A	G	3569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.68;ReadPosRankSum=0.989;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:48,166:0.78:214
chr2	44016885	rs3815994	C	G	3241.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:67,153:0.70:220
chr2	44019799	rs13420319	G	A	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:51,101:0.66:152
chr2	44019930	rs10199777	C	T	4083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.05;ReadPosRankSum=0.753;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:58,105:0.64:163
chr2	44019936	rs10199778	C	T	3966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.603;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=1.282;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:55,102:0.65:157
chr2	44021826	rs9309107	T	A	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	44022970	rs1025447	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-1.544;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr2	44027948	rs3792013	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	44028013	rs11556157	A	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr2	44028180	rs13432783	C	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=0.200;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr2	44032189	rs10177630	C	G	2062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=4.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=3.854;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:47,100:0.68:147
chr2	44032358	.	C	T	1190.77	.	AC=1;AF=0.500;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	0/1:31,57:0.65:88
chr2	44036800	rs4952683	A	G	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-1.916;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	44036922	rs10186552	T	C	190.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=0.110;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	44040401	rs6720173	G	C	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:73,174:0.70:247
chr2	44049872	rs4073237	C	T	3900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.49;ReadPosRankSum=-0.837;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:39,172:0.82:211
chr2	44099433	rs4148217	C	A	12861.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:219,591:0.73:810
chr2	44099582	rs4148218	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr2	44101214	rs10709506	CA	C	1257.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	44101430	rs4952689	T	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	44101538	rs28517482	C	T	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.086;QD=3.77;ReadPosRankSum=0.272;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:260,96:0.27:356
chr2	44101649	rs10667526	G	GC,GCCC	4662.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=158;set=Intersection	GT:AF:DP	1/2:0.21,0.79:121
chr2	44101711	rs13405698	T	C	336.90	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr2	44101743	rs76814535	C	T	120.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	44102235	rs4148220	T	C	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:37,134:0.78:171
chr2	44104925	rs6544718	T	C	12486.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:2,487:1.00:489
chr2	44116836	rs2955280	C	T	3171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-3.374;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:60,149:0.71:209
chr2	44123672	rs3839036	TC	T	2430.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:25,71:0.74:96
chr2	44145374	rs7568481	G	T	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:72,189:0.72:261
chr2	44152180	rs4952694	G	A	5284.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:84,248:0.75:332
chr2	44172444	rs28394191	A	C	7367.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:125,343:0.73:468
chr2	44173422	rs7594526	T	G	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:37,93:0.72:130
chr2	44187829	rs10190161	A	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.733;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:52,23:0.31:75
chr2	44209477	rs6741066	C	T	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=3.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.900;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:205,71:0.26:276
chr2	44502788	rs3738985	A	C	2295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=1.547;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:448,162:0.27:610
chr2	44508835	rs11124986	G	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	44512971	rs3768919	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.033;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr2	44528267	rs61179824	GT	G	25622.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.950;QD=24.01;ReadPosRankSum=-1.523;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:272,795:0.75:1067
chr2	44531484	rs3738984	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=2.697;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr2	44545234	.	GTTT	G,GTT	5210.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.244;QD=21.62;ReadPosRankSum=-0.893;SOR=0.613;set=HC	GT:AD:AF:DP	1/2:19,142,80:0.59,0.33:241
chr2	44545298	rs72802996	C	T	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:35,81:0.70:116
chr2	44547574	rs698761	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.600;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:228,58:0.20:286
chr2	44547909	rs8886	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr2	44548613	rs2241871	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-3.583;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:85,22:0.21:107
chr2	44550671	rs12474294	A	C	270.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr2	44556298	rs2033951	T	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	44565447	rs2289463	A	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.744;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=12.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.874;SOR=0.030;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	44569474	rs2304769	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	44569700	rs61004197	AAAT	A	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.953;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=1.060;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr2	44570776	rs17580226	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	44570804	rs12053381	C	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr2	44617324	rs1085486	T	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr2	44858687	rs10191477	T	C	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=1.472;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:114,37:0.25:151
chr2	44942331	rs35173334	CA	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.178;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	44942384	rs343957	C	G	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	44970969	rs115804942	A	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	45170153	rs4953152	G	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	45171842	rs338074	A	G	29780.77	.	AC=2;AF=1.00;AN=2;DB;DP=1175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,1170:1.00:1170
chr2	45647043	rs3213788	C	G	5029.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:81,225:0.74:306
chr2	45773816	rs2276657	C	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr2	45774050	rs6708810	G	A	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:75,138:0.65:213
chr2	45774548	rs1865685	A	C	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:51,120:0.70:171
chr2	45780962	rs3816107	C	G	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:21,62:0.75:83
chr2	45826526	rs35501868	CT	C	7871.73	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:75,225:0.75:300
chr2	45879610	rs637909	A	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	46203796	rs2278786	G	C	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	46207618	rs7557421	G	A	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr2	46211658	rs4953294	G	A	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=1.537;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:270,74:0.22:344
chr2	46228391	.	CAT	C	131	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=3;MGOF=7;MMLQ=27;MQ=60.14;NF=2;NR=5;PP=131;QD=19.5714285714;SC=TGATGGAAGACATATATATAT;SbPval=0.11;Source=Platypus;TC=20;TCF=12;TCR=8;TR=7;WE=46228404;WS=46228381;set=Platypus	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	46231525	rs4953297	T	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.005;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr2	46372174	rs10495929	G	A	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:61,121:0.66:182
chr2	46372411	rs12990867	G	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:9,45:0.83:54
chr2	46378419	rs35676949	T	TAC	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.340;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr2	46386827	.	TC	T	7404.73	.	AC=1;AF=0.500;AN=2;DP=318;set=Intersection	GT:AD:AF:DP	0/1:90,220:0.71:310
chr2	46583272	rs375524139	AC	A	158.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	46602722	rs7567582	T	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	46603671	rs7557402	C	G	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	46605659	rs7571218	A	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	46605954	rs7598371	G	C	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	46608542	rs13006131	C	G	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	46739157	rs3814045	A	G	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-2.515;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:171,51:0.23:222
chr2	46771134	rs6714484	G	C	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	46799852	rs1451153	G	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=1.409;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr2	46819815	rs2305350	A	G	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	46840735	rs3213985	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.117;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	46851182	rs13430706	T	A	146.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.92;ReadPosRankSum=1.465;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	46986416	rs6738426	A	G	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.257;QD=3.01;ReadPosRankSum=1.195;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:260,85:0.25:345
chr2	46987300	rs3768720	T	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:53,20:0.27:73
chr2	47083030	rs3835756	ATG	A	1554.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:15,74:0.83:89
chr2	47083041	rs200683836	TA	T	887.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.678;QD=10.20;ReadPosRankSum=0.367;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:26,61:0.70:87
chr2	47083044	rs1079	A	T,AT	3613.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;QD=38.86;SOR=1.061;set=HC	GT:AD:AF:DP	1/2:0,81,12:0.87,0.13:93
chr2	47132834	.	TA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.200;QD=2.32;ReadPosRankSum=0.537;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr2	47132945	rs7600882	G	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.12;ReadPosRankSum=1.325;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	47177787	rs2033533	G	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	47185438	rs4952856	G	A	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:59,114:0.66:173
chr2	47201797	rs6745836	A	T	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	47201991	rs67758600	CT	C	425.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	47202314	rs2304286	C	T	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.965;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:93,27:0.23:120
chr2	47220414	rs6544948	T	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr2	47251469	rs2304290	G	C	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.522;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:424,124:0.23:548
chr2	47251634	rs6713052	T	C	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-1.158;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:239,82:0.26:321
chr2	47256297	rs2304289	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-1.578;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr2	47256337	rs371741809	G	C	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-0.341;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:129,45:0.26:174
chr2	47256618	rs7575628	A	G	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.660;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:107,38:0.26:145
chr2	47273668	rs12712986	G	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-0.486;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	47277035	rs77908208	C	T	1157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.98;ReadPosRankSum=-0.181;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:14,47:0.77:61
chr2	47277043	rs2304287	C	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.962;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr2	47277207	rs3816066	CA	AG	21498.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr2	47278823	rs17482356	C	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.587;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	47314048	rs2280647	T	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.29;ReadPosRankSum=-0.092;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	47314052	rs1474394	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.37;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	47348347	rs1880583	C	T	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	47357458	rs58184321	A	G	9897.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr2	47380145	rs17036300	T	C	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=-2.506;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:13,61:0.82:74
chr2	47380203	rs815809	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=1.244;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr2	47380305	rs6749284	C	T	175.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.59;ReadPosRankSum=1.036;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	47382214	rs815806	C	G	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	47387989	.	C	CAA	82	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=20;HapScore=2;MGOF=51;MMLQ=18;MQ=60.0;NF=0;NR=5;PP=82;QD=17.0;SC=AGCAAAAGACCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=5;WE=47387997;WS=47387979;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	47388844	rs2016682	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr2	47399415	rs34990437	G	A	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chr2	47399601	rs4953472	A	G	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=0.947;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:31,58:0.65:89
chr2	47403383	rs11842	G	T	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr2	47604154	rs146685071	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.759;SOR=1.446;set=HC	GT:AD:AF:DP	0/1:99,18:0.15:117
chr2	47635523	.	C	CT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.439;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr2	47656801	rs2347794	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=2.031;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:43,8:0.16:51
chr2	47693875	.	A	G	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.354;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr2	47739551	rs2303424	A	G	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.150;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:99,36:0.27:135
chr2	47748292	rs2278139	A	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.203;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:161,50:0.24:211
chr2	48010558	rs1042820	C	A	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	48010654	rs55927047	C	G	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	48018081	rs1800932	A	G	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr2	48018314	rs3136282	T	A	1078.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	48022900	rs3136316	A	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	48023115	rs1800935	T	C	9545.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr2	48025694	rs1800936	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-0.000;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	48030458	rs2072447	G	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	48030838	rs2020911	A	T	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	48032740	rs267608104	A	AT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.259;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr2	48032874	rs2234731	ACTAT	A	2474.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	48032937	rs3136359	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	48033551	rs3136367	C	G	8782.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr2	48033890	rs267608137	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.704;QD=0.32;ReadPosRankSum=0.300;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:117,31:0.21:148
chr2	48034084	rs2020906	T	A	1287.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr2	48040564	.	A	ATTTT	56.52	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.84;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	48040904	rs373765859	G	GA	5292.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	48046012	rs374445177	TA	T	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.275;QD=1.60;ReadPosRankSum=-0.155;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:164,70:0.30:234
chr2	48066232	rs368463059	CT	C	189.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	48132541	rs375422641	CCCCGCCCGCCCGCCCG	C	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.674;QD=15.23;ReadPosRankSum=-1.141;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	48573895	rs79073127	G	C	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.323;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:149,47:0.24:196
chr2	48586365	rs75288627	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr2	48688258	rs376347710	AT	A	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.656;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.550;QD=1.38;ReadPosRankSum=-0.077;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr2	48722755	rs4443044	T	C	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	48725610	rs3811519	C	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	48734576	rs6716341	G	A	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	48738687	rs4528813	G	C	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	48808594	rs3749142	C	T	7538.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:118,341:0.74:459
chr2	48809593	rs3792234	G	T	4726.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:74,216:0.74:290
chr2	48822381	rs2140551	G	A	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	48844968	rs2293269	C	G	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	48847918	rs10634616	G	GAATA	1250.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr2	48873978	rs10432667	A	G	11786.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr2	48898798	rs3920390	T	A	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	48906625	rs1965508	T	C	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	48915871	rs11125179	A	G	8325.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	48921375	rs2293275	T	C	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	48925746	rs6755901	C	T	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	48925986	rs70946824	AT	A	771.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.572;QD=13.07;ReadPosRankSum=0.634;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:7,52:0.88:59
chr2	48936006	rs73928211	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	48952701	rs6545063	C	G	145.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	48956431	rs11892719	T	A	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:18,89:0.83:107
chr2	48982755	.	G	GGCTGCA	872.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.57;MQRankSum=1.823;QD=29.09;ReadPosRankSum=0.246;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr2	49003458	rs62135453	C	T	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.317;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:67,26:0.28:93
chr2	49003566	rs10194838	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr2	49215977	rs2072488	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	49216284	rs2072487	C	T	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	49244559	rs2091787	A	G	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:121,59:0.33:180
chr2	49510173	rs7578654	A	C	8945.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr2	50170729	rs1345562	G	C	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=-0.018;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr2	50201110	rs9636391	A	G	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	50201383	rs4971883	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	50434759	rs1715984	C	G	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:15,60:0.80:75
chr2	50540027	rs10203511	A	G	127.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	50692560	rs3213756	A	G	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=5.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-2.146;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:160,49:0.23:209
chr2	50692819	rs10168838	T	G	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	50693363	rs1520454	A	T	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	50733860	rs7584062	A	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	50758657	rs2066948	T	C	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	50966283	rs1546667	C	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	51206342	rs35296842	C	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.065;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:115,27:0.19:142
chr2	52929596	rs6711444	C	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	52929680	rs6726779	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	52929780	rs6726935	T	G	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	52929844	rs6545299	G	A	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	53832072	rs2357490	C	T	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-1.434;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:298,86:0.22:384
chr2	53920931	rs7563054	G	A	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	53921270	rs3731970	C	T	144.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	53943696	rs3213768	C	T	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.262;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:92,47:0.34:139
chr2	53955850	rs17521008	C	T	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:56,118:0.68:174
chr2	53955982	rs1127767	T	A	2676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=0.003;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:44,127:0.74:171
chr2	53978187	rs115817165	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	53990532	rs13397311	C	T	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.082;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:136,44:0.24:180
chr2	53992593	rs2287339	A	T	3405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=948;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.604;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:698,244:0.26:942
chr2	53995003	rs114675546	G	T	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.555;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:202,72:0.26:274
chr2	54014558	rs2287342	G	T	2296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.209;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:518,166:0.24:684
chr2	54023247	rs72502136	GT	G	156.70	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	54024626	rs2692514	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	54035374	rs2692519	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	54035447	rs1127362	A	G	3836.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:49,165:0.77:214
chr2	54035650	rs2287346	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr2	54041983	rs2542571	G	T	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	54042132	.	CTT	C	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.690;QD=14.34;ReadPosRankSum=-1.336;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	54114967	rs805399	G	A	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	54115904	rs805400	A	G	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	54116003	rs805401	C	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	54120025	rs805408	A	T	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	54120204	rs805409	A	G	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	54120820	rs805412	G	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	54122956	rs698856	A	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	54122984	rs698857	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	54125258	rs805416	T	C	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	54125495	rs805417	T	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	54127041	rs805423	C	T	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	54133744	rs805316	T	C	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	54135429	rs805319	G	C	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	54144448	rs805325	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	54152927	rs2302879	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	54155240	rs805349	A	G	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,167:0.99:169
chr2	54158957	rs805352	C	T	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	54161885	rs805357	G	T	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	54343012	rs7573491	C	A	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	54362437	rs2357954	T	C	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	54482964	rs843704	C	T	27463.77	.	AC=2;AF=1.00;AN=2;DB;DP=1075;set=Intersection	GT:AD:AF:DP	1/1:2,1044:1.00:1046
chr2	54494370	rs865816	A	G	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	54587596	rs2280718	C	T	3751.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:65,173:0.73:238
chr2	54608883	rs11677654	C	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	54839276	rs3796014	A	G	12824.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr2	54844790	rs2229506	C	T	10394.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr2	54844970	rs62134708	G	A	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	54855137	rs2971887	T	C	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	54858154	rs61732872	C	T	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=2.173;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:388,125:0.24:513
chr2	54884870	rs966003	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	54894649	rs907136	G	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-1.064;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:118,31:0.21:149
chr2	54895817	rs201990044	AT	A	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=1.625;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	55040426	rs2631840	A	G	8552.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr2	55043798	rs2578711	G	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=1.114;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr2	55071101	rs72020199	TTG	T	1148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=8.688;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=1.568;QD=15.32;ReadPosRankSum=-1.416;SOR=1.927;set=HC	GT:AD:AF:DP	0/1:17,58:0.77:75
chr2	55077061	rs12713278	A	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	55080703	rs35619447	A	C	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	55093842	rs1961245	G	A	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	55121930	rs998230	C	G	515.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=-0.425;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,22:0.88:25
chr2	55121996	rs2165007	G	C	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:42,145:0.78:187
chr2	55122589	rs6545454	A	G	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.163;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:351,144:0.29:495
chr2	55126730	rs6545455	C	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr2	55155672	rs10164886	A	G	2625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=856;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.917;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:653,199:0.23:852
chr2	55176112	rs13394146	C	T	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-2.255;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:270,75:0.22:345
chr2	55180965	rs4671998	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	55181022	rs34371058	T	TA	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.957;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.932;QD=5.43;ReadPosRankSum=0.449;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:67,60:0.47:127
chr2	55186229	rs12623902	T	C	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-2.249;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:88,29:0.25:117
chr2	55186394	rs17346629	A	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=2.532;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:96,17:0.15:113
chr2	55187297	rs58866010	A	AG	3368.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	55193888	rs114435610	C	G	3567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=-1.889;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:76,167:0.69:243
chr2	55195768	rs114778157	G	C	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:79,177:0.69:256
chr2	55200800	rs2255112	T	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.008;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.461;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr2	55201038	rs2255026	C	T	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	55214618	rs2580769	A	C	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	55214912	rs2580770	C	G	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	55252214	rs13401937	T	G	388.98	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr2	55405037	rs75442422	T	A	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	55407754	rs6716066	C	T	11809.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr2	55407935	rs10183953	G	A	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	55436001	.	CTTT	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-0.801;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	55439963	rs2118283	C	A	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	55449412	rs74785222	C	A	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=2.257;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:184,38:0.17:222
chr2	55449464	rs17852670	T	C	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.118;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:236,60:0.20:296
chr2	55470115	rs11357	C	T	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,43:0.72:60
chr2	55471382	rs61109509	T	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.394;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr2	55471407	rs2589083	T	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	55473386	rs3833559	CAT	C	4608.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:31,115:0.79:146
chr2	55473681	rs2589081	A	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	55489629	rs2589093	T	C	809.78	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:4,32:0.89:36
chr2	55490682	.	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=1.063;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	55490819	rs1056445	G	T	6040.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:72,273:0.79:345
chr2	55518742	rs2249856	T	C	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	55522422	rs2589110	A	G	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr2	55527108	rs1545121	G	A	4856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.808;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:75,231:0.75:306
chr2	55528257	rs2576699	A	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr2	55528514	rs2589117	A	G	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	55559651	rs368125112	CA	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.416;QD=2.81;ReadPosRankSum=1.542;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	55561944	rs112409178	T	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:55,12:0.18:67
chr2	55566531	rs12621734	A	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.72;ReadPosRankSum=-0.319;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	55566538	rs71821845	CTATT	C	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	55576634	rs2589090	C	T	8364.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr2	55582601	rs5831355	T	TTTGACACA	1176.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	55582635	rs2589104	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr2	55582684	rs1437394	A	T	6072.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	55589364	rs13019339	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr2	55589434	rs3111412	T	A	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr2	55760830	.	CAAA	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.14;ReadPosRankSum=-1.025;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	55760844	rs9808405	A	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.06;ReadPosRankSum=1.349;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	55760940	rs4671248	G	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=1.938;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:124,35:0.22:159
chr2	55771050	rs3816489	C	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr2	55771161	rs1045910	A	G	16457.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.28;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr2	55771161	.	ACCTGAAGA	GCCTGAAGA,GCCTGAAGT	1709	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.64;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=17;MQ=60.0;NF=106,73;NR=84,50;PP=565,1709;QD=3.15669059235;SC=CCACAAAAAGACCTGAAGATT;SbPval=0.52;Source=Platypus;TC=190;TCF=106;TCR=84;TR=190,123;WE=55771177;WS=55771151;set=Platypus	GT:AF:DP	0/1:1.00:190
chr2	55771169	rs1045920	A	T	6475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-1.825;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:114,315:0.73:429
chr2	55805440	rs2903704	T	C	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	55806912	rs35232864	G	A	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.956;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr2	55806924	rs67834644	CAT	C	409.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr2	55808969	rs1975486	C	T	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	55812061	rs4312532	A	G	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	55815892	rs6545507	C	T	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.57;ReadPosRankSum=0.285;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	55815997	rs6545508	T	C	2716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-1.650;QD=15.35;ReadPosRankSum=0.983;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:47,130:0.73:177
chr2	55871749	rs370402214	C	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-0.309;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:96,17:0.15:113
chr2	55871932	rs71393504	AT	A	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=1.675;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr2	55872538	rs7594497	T	C	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=0.091;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:16,59:0.79:75
chr2	55873385	rs7584120	C	G	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	55881954	rs148083902	TCCTGCCTTGGCCTCCCAAGGCTCATG	T	4529.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:50,113:0.69:163
chr2	55882076	rs138669964	A	G	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.342;QD=3.73;ReadPosRankSum=0.388;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:158,57:0.27:215
chr2	55882247	rs190655176	A	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	55887176	rs7592219	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.437;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-1.590;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	55889062	rs782604	G	A	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	55898929	rs2627771	A	G	242.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	55899228	rs782631	A	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	55913468	rs143717902	A	T	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:48,84:0.64:132
chr2	55920736	.	A	G	1353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.869;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:305,95:0.24:400
chr2	56102260	rs55673402	G	GAT	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=5.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-1.780;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr2	56149475	rs2277886	C	G	8339.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr2	56216052	rs10865292	G	A	9181.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr2	56411817	rs35587531	C	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-1.335;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:125,31:0.20:156
chr2	56603118	rs72803075	C	G	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.821;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:213,49:0.19:262
chr2	56611543	rs34920355	C	CAAG	1668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.213;QD=6.90;ReadPosRankSum=1.910;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:187,55:0.23:242
chr2	58381785	rs848294	T	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	58388696	rs848291	A	G	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	58392789	rs848288	T	C	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	58392797	rs148383677	TTTA	T	11248.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	58453843	.	G	GA	704.74	.	AC=2;AF=1.00;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	1/1:8,43:0.84:51
chr2	60687959	rs7569946	A	G	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.616;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:509,107:0.17:616
chr2	60768978	rs2665668	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr2	60780421	.	GGGC	G	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.944;QD=1.49;ReadPosRankSum=0.777;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:206,24:0.10:230
chr2	60997770	rs10187671	T	A	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	61007782	rs10496089	A	G	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:57,192:0.77:249
chr2	61007986	rs17538295	T	C	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:14,71:0.84:85
chr2	61008036	rs3845814	C	T	715.22	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:3,28:0.90:31
chr2	61009909	rs10197672	C	T	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.664;QD=14.26;ReadPosRankSum=0.368;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:31,75:0.71:106
chr2	61009938	rs139543059	AT	A	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.789;QD=8.46;ReadPosRankSum=-0.940;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:21,41:0.66:62
chr2	61021349	rs11125855	A	G	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr2	61118739	rs10185028	A	G	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr2	61121492	rs842644	G	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	61128284	rs2115592	T	C	142.81	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-3.015;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=-1.454;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	61128285	.	CTT	C	57.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.169;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.81;ReadPosRankSum=1.341;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	61175312	rs12479056	T	C	13175.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr2	61187478	rs375391646	CA	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.172;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr2	61238871	rs370406865	GA	G	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.589;QD=1.36;ReadPosRankSum=1.439;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:71,29:0.29:100
chr2	61245551	rs12996059	G	C	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:34,79:0.70:113
chr2	61245604	rs70959887	AT	A	155.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr2	61298684	.	C	CA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.682;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr2	61304002	rs1729657	A	G	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	61304377	rs10172306	A	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.160;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	61308517	rs1177295	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr2	61308569	.	AT	A	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-2.012;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr2	61349446	rs1177284	G	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	61384906	rs7558954	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.761;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr2	61385100	rs1665258	G	A	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.331;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:100,25:0.20:125
chr2	61385105	rs1729671	G	C	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.525;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=1.608;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:100,23:0.19:123
chr2	61385248	rs1177309	A	G	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	61389609	rs17006627	G	C	3851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-0.447;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:62,181:0.74:243
chr2	61389737	rs1729674	T	G	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-0.406;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:70,43:0.38:113
chr2	61389799	rs1729673	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	61404514	rs112583316	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=-0.275;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	61413092	rs67060712	AATAAC	A	637.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	61413723	rs1809028	A	G	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	61415492	rs14170	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr2	61417617	rs777591	A	G	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.476;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:110,43:0.28:153
chr2	61450454	rs2123111	A	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr2	61456604	.	A	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=18.274;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=1.363;QD=7.07;ReadPosRankSum=1.383;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr2	61468991	rs77445405	A	C	206.78	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr2	61475577	rs34823499	A	G	239.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	61484556	rs2060824	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	61522047	rs35292974	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr2	61522123	rs13014347	T	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	61528299	rs11428092	T	TA	1814.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:30,86:0.74:116
chr2	61538602	rs141750762	G	GAAAAGAGAAAGAAAAAGAAAA	996.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.25;QD=49.84;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	61552484	rs2593624	T	A	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=-0.472;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr2	61570886	rs72381726	AAAGT	A	1324.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr2	61575308	rs6722430	A	G	9738.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:1,385:1.00:386
chr2	61576517	rs811378	G	A	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	61577667	.	G	GA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.976;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr2	61605614	rs10208769	T	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr2	61622251	rs3213951	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.439;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr2	61647901	rs778155	A	G	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-0.989;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:36,79:0.69:115
chr2	61648932	rs778156	A	G	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr2	61697909	.	G	A	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=4.656;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.547;QD=4.77;ReadPosRankSum=-1.047;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:132,56:0.30:188
chr2	61713209	.	GGAAAATC	G	263	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=263;QD=96.6666666667;SC=ACTGAAAACAGGAAAATCTTG;SbPval=1.0;Source=Platypus;TC=16;TCF=1;TCR=15;TR=3;WE=61713228;WS=61713199;set=Platypus	GT:AD:AF:DP	0/1:13,3:0.19:16
chr2	61713218	rs60155512	T	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=1.888;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,3:0.13:23
chr2	61713218	.	TGT	AGG	236	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=26;MQ=60.0;NF=0;NR=3;PP=236;QD=96.4892916207;SC=AGGAAAATCTTGTGTTTGTAT;SbPval=1.0;Source=Platypus;TC=18;TCF=3;TCR=15;TR=3;WE=61713228;WS=61713199;set=Platypus	GT:AD:AF:DP	0/1:15,3:0.17:18
chr2	61713220	rs61235340	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.894;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=1.837;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,3:0.14:22
chr2	61719430	.	A	C	420.77	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:81,29:0.26:110
chr2	61729258	rs2305155	A	G	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=1.655;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:89,33:0.27:122
chr2	61729268	rs2305156	T	C	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=1.763;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:97,35:0.27:132
chr2	61749690	rs3732171	C	T	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=1.043;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:75,21:0.22:96
chr2	61749716	rs3732170	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.687;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr2	62053878	rs11392751	G	GA	157.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	62063093	rs11299120	TA	T	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.987;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.949;QD=5.22;ReadPosRankSum=0.237;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:31,37:0.54:68
chr2	62066927	rs4672457	A	G	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr2	62069528	rs11125896	C	T	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=-0.885;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:24,50:0.68:74
chr2	62073918	rs58256183	C	T	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	62074140	rs113296637	A	AAC	1755.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=40.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	62081012	rs4270331	A	C	31362.77	.	AC=2;AF=1.00;AN=2;DB;DP=1236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,1223:1.00:1223
chr2	62081217	rs1881616	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	62095994	rs4672463	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	62100380	rs76248080	G	T	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.040;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr2	62104343	rs7571143	C	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	62107376	rs5831625	T	TC	1224.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	62107632	rs2272429	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	62110551	.	CAAAAAAA	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=1.981;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr2	62110571	rs12713451	G	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	62112221	rs11429418	G	GA	5617.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:19,263:0.93:282
chr2	62112222	rs67059162	G	A	9397.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.63;ReadPosRankSum=-1.578;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:2,286:0.99:288
chr2	62282474	rs13020801	G	A	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chr2	62362995	rs9096	T	C	3586.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:56,165:0.75:221
chr2	62433003	.	G	A	2124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=3.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.47;ReadPosRankSum=1.445;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:31,98:0.76:129
chr2	62729674	rs4672527	T	C	6662.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	62729747	rs11443505	G	GA	2269.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=25.22;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	62738883	rs6757222	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-0.537;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:117,20:0.15:137
chr2	62738931	rs6757448	G	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.467;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:194,41:0.17:235
chr2	62739135	rs4405748	A	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	63182611	rs148454752	G	GT	582.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr2	63401973	rs2421862	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.815;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr2	63457026	.	GA	G	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.22;ReadPosRankSum=-0.122;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	63486429	rs992214	C	T	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:58,123:0.68:181
chr2	63540523	rs1517402	A	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr2	63596486	rs190144404	G	A	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:14,76:0.84:90
chr2	63605772	rs2292794	A	G	281.78	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr2	63609017	rs2138796	A	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr2	63631830	rs6724115	T	C	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:17,78:0.82:95
chr2	63631889	rs4671501	A	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	63631921	rs4671502	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	63664829	rs11896820	A	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	63720210	rs7563623	A	G	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.16;ReadPosRankSum=-1.834;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	63798333	rs4671068	C	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.218;QD=18.02;ReadPosRankSum=0.355;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:6,31:0.84:37
chr2	63816672	rs10469944	C	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	63822785	rs2305157	T	C	168.28	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr2	63826164	rs7591566	C	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	63826528	rs7606045	T	G	98.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.48;ReadPosRankSum=-0.431;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	63850098	rs12476592	G	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.976;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	64069732	rs6546029	G	A	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	64084869	rs78463006	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr2	64085114	rs10183479	G	A	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	64118158	rs11433092	T	TA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.316;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr2	64126775	rs78227932	C	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-0.543;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:91,14:0.13:105
chr2	64139901	rs2302809	A	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	64140301	rs10207847	A	T	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	64143884	rs13027117	T	C	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	64195997	rs200094653	CA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.825;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr2	64321823	rs3731962	A	G	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:49,118:0.71:167
chr2	64323526	rs76204822	T	A	3159.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:38,131:0.78:169
chr2	64323751	rs368871090	GA	G	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=1.763;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:235,50:0.18:285
chr2	64682364	rs3770741	A	C	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	64779676	rs144984827	A	G	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.492;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:138,42:0.23:180
chr2	65131523	rs12623286	A	T	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=1.177;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:255,76:0.23:331
chr2	65132050	rs78893802	G	A	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.111;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:162,42:0.21:204
chr2	65159596	rs1035165	G	A	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-2.118;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:137,26:0.16:163
chr2	65200618	rs4671636	C	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:85,29:0.25:114
chr2	65217089	rs7559202	G	C	9084.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:116,419:0.78:535
chr2	65245365	rs759458	G	A	8153.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:134,379:0.74:513
chr2	65315880	rs1420184	G	C	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	65315903	rs1420185	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	65473930	rs58944514	AAAATTTTC	A	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.433;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr2	65478371	rs7574628	T	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=0.566;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	65481008	rs268871	A	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=1.021;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr2	65488538	rs268862	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=1.115;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:97,37:0.28:134
chr2	65495570	rs55843720	A	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.759;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-0.728;SOR=2.229;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr2	65495571	rs60931828	T	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.189;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=6.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=-0.595;SOR=2.160;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr2	65495573	rs72536103	A	AC	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.735;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=11.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-1.398;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr2	65495887	rs268875	G	A	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-8.344;QD=2.06;ReadPosRankSum=-0.420;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:407,102:0.20:509
chr2	65604914	rs268120	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	66665146	rs2280334	T	C	7338.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:87,318:0.79:405
chr2	66667186	rs2271856	C	T	603.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.347;QD=18.87;ReadPosRankSum=0.029;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,28:0.88:32
chr2	66667200	.	A	AACACACACACAC	2456	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=24;MQ=59.4;NF=0;NR=5;PP=2456;QD=492.0;SC=CGCGCGCGCGAACACACACAC;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=5;WE=66667208;WS=66667176;set=Platypus	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	66668536	rs41285949	A	G	3802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=2.016;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:32,174:0.84:206
chr2	66798282	rs2861108	G	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	67630980	rs3770657	G	A	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	67631831	rs61740794	G	A	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	67632125	rs3770655	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	67637196	rs1569	G	A	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	68352515	rs6742154	A	C	8162.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,309:1.00:310
chr2	68358341	rs62145930	T	C	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=26.52;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	68358653	rs17035004	T	C	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	68385097	rs2044693	A	G	12832.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr2	68388823	rs1137930	A	G	6347.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	68389276	rs11402583	G	GA	412.74	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr2	68389481	rs3217588	CTT	C	10122.73	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:84,251:0.75:335
chr2	68415767	rs687	G	A	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr2	68444168	.	A	ACG	641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.08;MQRankSum=0.281;QD=4.55;ReadPosRankSum=-0.652;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:105,36:0.26:141
chr2	68444171	rs374427852	C	CGCAG	6233.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.08;QD=35.62;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:4,171:0.98:175
chr2	68483396	rs7593613	A	T	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	68511506	rs5831925	GA	G,GAA	754.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.673;QD=10.06;ReadPosRankSum=0.517;SOR=0.590;set=HC	GT:AD:AF:DP	1/2:11,44,20:0.59,0.27:75
chr2	68546304	rs4671897	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	68546374	rs4671898	T	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	68546449	rs13025842	G	A	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=-0.892;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr2	68592584	rs880668	T	C	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	68609588	rs185210940	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.155;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	68613710	rs2070171	G	A	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	68615654	rs2241946	T	C	10696.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr2	68620410	rs17602092	T	A	8913.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr2	68621338	rs17530191	G	T	5578.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	68621427	rs34196827	G	A	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	68622658	rs1373200	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	68622914	rs1063479	G	A	8033.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr2	68622952	rs1050181	G	C	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	68772281	rs11337234	AT	A	600.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr2	68962259	rs34504087	T	C	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:40,92:0.70:132
chr2	69002760	rs10445945	C	T	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.535;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:135,47:0.26:182
chr2	69009304	rs2271834	C	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:16,97:0.86:113
chr2	69043539	rs2271832	G	C	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=2.007;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	69046164	rs17545022	C	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr2	69177971	rs74413164	C	T	5249.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:83,245:0.75:328
chr2	69180161	rs7561266	T	A	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	69201894	rs4417751	C	T	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	69297622	rs4591376	C	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	69298817	rs13030844	T	C	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.484;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:185,57:0.24:242
chr2	69317925	rs4854546	G	A	12455.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr2	69318129	rs4241348	T	G	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	69330284	rs4241349	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	69409029	rs6749826	C	A	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:36,117:0.76:153
chr2	69420591	.	T	TCTCA	517.73	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:47,28:0.37:75
chr2	69420596	rs7584057	T	C	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:19,75:0.80:94
chr2	69553375	rs201330278	GA	G	850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=10.50;ReadPosRankSum=1.294;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:19,62:0.77:81
chr2	69565563	rs113734896	TA	T	790.73	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:197,61:0.24:258
chr2	69565842	rs11296709	TA	T	644.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.93;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	69565844	rs116730412	A	T	653.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.46;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	69573029	rs6722492	T	C	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	69583873	rs67434964	AT	A	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=6.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=2.048;SOR=2.245;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	69586293	rs6546505	A	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	69586370	rs67760762	A	G	2750.10	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:16,124:0.89:140
chr2	69614161	rs6720415	A	G	24035.77	.	AC=2;AF=1.00;AN=2;DB;DP=921;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,914:1.00:914
chr2	69626342	.	CA	C	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.415;QD=1.84;ReadPosRankSum=0.952;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:61,31:0.34:92
chr2	69633382	rs6546513	A	T	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	69642513	.	C	CTT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.020;QD=2.67;ReadPosRankSum=-2.636;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr2	69646504	rs7605572	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.753;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr2	69657349	rs113587680	CT	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=-2.178;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	69659126	rs4453725	A	T	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:54,145:0.73:199
chr2	69693006	rs9309428	C	T	9012.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:128,416:0.76:544
chr2	69709919	rs6721259	A	G	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.954;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:168,43:0.20:211
chr2	69710027	.	A	G	352.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	69741801	rs6757825	C	T	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.186;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:207,54:0.21:261
chr2	69741854	rs6715776	T	G	8238.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr2	69746296	rs7603932	C	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:131,43:0.25:174
chr2	69771484	rs3771544	C	T	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=0.870;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:158,54:0.25:212
chr2	69784278	rs3821277	T	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr2	70014986	rs11677629	T	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	70015108	rs11683908	A	G	3015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-1.172;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:57,138:0.71:195
chr2	70031797	rs3771541	C	G	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:59,172:0.74:231
chr2	70033584	rs2228203	C	T	4763.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:60,219:0.78:279
chr2	70033649	rs17037076	G	A	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:20,80:0.80:100
chr2	70039677	rs2305523	A	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	70057448	rs3732266	T	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.60;ReadPosRankSum=-2.450;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	70064927	rs1377996	C	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr2	70066571	rs3832156	C	CTT	890.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-1.947;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:36,46:0.56:82
chr2	70068057	rs3771533	G	A	2061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=0.862;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:27,96:0.78:123
chr2	70068258	rs3836157	CT	C	327.94	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr2	70076954	rs4852349	A	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-1.037;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr2	70098808	rs3214007	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	70162534	rs2228183	T	G	3454.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:46,155:0.77:201
chr2	70164034	rs3771531	T	C	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:59,170:0.74:229
chr2	70164580	rs3217643	C	CAGGG	923.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr2	70188676	rs3796097	T	C	6957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.53;ReadPosRankSum=-0.787;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:97,324:0.77:421
chr2	70190288	rs34641834	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	70377653	rs12989348	G	A	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:43,145:0.77:188
chr2	70439942	rs116621885	T	C	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.879;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:210,49:0.19:259
chr2	70443938	.	C	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.000;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr2	70457784	rs200532251	C	CAA	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-0.446;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:16,31:0.66:47
chr2	70485174	rs13019683	A	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr2	70524577	rs2618235	G	A	4309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.458;QD=16.32;ReadPosRankSum=2.303;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:66,198:0.75:264
chr2	70528827	rs2279159	G	A	9788.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:155,444:0.74:599
chr2	70676639	rs538118	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.403;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr2	70676769	rs71710818	GA	G	1338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.654;QD=11.25;ReadPosRankSum=-0.542;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:36,83:0.70:119
chr2	70677994	rs2166975	G	A	3602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.01;ReadPosRankSum=-0.199;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:58,167:0.74:225
chr2	70678173	rs3732249	C	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.31;ReadPosRankSum=0.857;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	70678176	rs3732248	G	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.31;ReadPosRankSum=0.857;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	70679067	rs3771522	G	A	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=0.240;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:33,94:0.74:127
chr2	70680211	rs112692567	CT	C	1792.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr2	70683753	rs2278791	T	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr2	70905099	rs2902577	T	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	70906115	rs2074815	C	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.686;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:193,54:0.22:247
chr2	70915134	rs2074820	C	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:77,30:0.28:107
chr2	70915320	rs7340254	T	A	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.354;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:85,38:0.31:123
chr2	70915323	rs7340145	C	T	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-0.301;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:78,34:0.30:112
chr2	70915347	rs7340146	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,18:0.28:65
chr2	70917812	rs10084293	C	T	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	70933636	rs2287096	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.858;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:77,24:0.24:101
chr2	70933659	rs11682965	T	A	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:15,45:0.75:60
chr2	70995129	rs2287097	G	A	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=1.635;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:113,42:0.27:155
chr2	70995217	rs2287098	A	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.596;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr2	71043461	rs722896	C	T	7567.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:113,340:0.75:453
chr2	71044211	rs2075221	C	T	2325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=-0.606;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:57,108:0.65:165
chr2	71058226	rs2080390	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:107,34:0.24:141
chr2	71058835	rs741326	A	G	3996.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:92,190:0.67:282
chr2	71060936	rs17718987	G	C	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.625;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:395,121:0.23:516
chr2	71062648	rs10489990	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=1.976;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:106,29:0.21:135
chr2	71062833	rs11450450	G	GC	12796.73	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	71160421	rs2270262	G	C	11492.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr2	71162996	rs11685700	A	G	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr2	71163173	rs17720303	C	T	21376.77	.	AC=2;AF=1.00;AN=2;DB;DP=835;set=Intersection	GT:AD:AF:DP	1/1:0,825:1.00:825
chr2	71185391	rs967063	A	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-2.740;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:217,41:0.16:258
chr2	71186382	rs17006573	G	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr2	71190384	rs2072462	C	T	3045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=1071;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-1.061;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:823,243:0.23:1066
chr2	71190545	rs2072463	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,22:0.26:85
chr2	71205976	rs1115049	A	G	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	71206058	rs1115050	A	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	71206626	rs3771383	G	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:7,32:0.82:39
chr2	71211417	rs72832792	C	G	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:39,116:0.75:155
chr2	71211815	rs3796098	G	A	12053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=1.545;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:160,561:0.78:721
chr2	71211989	rs3796099	A	G	47836.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.863;ClippingRankSum=0.000;DB;DP=1841;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;MQRankSum=0.047;QD=26.20;ReadPosRankSum=-0.478;SOR=0.408;set=HC	GT:AD:AF:DP	1/1:1,1825:1.00:1826
chr2	71212129	rs3796100	A	T	9600.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:135,428:0.76:563
chr2	71212405	rs61732279	T	C	5238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.691;QD=15.88;ReadPosRankSum=-1.395;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:86,244:0.74:330
chr2	71212465	.	C	T	1875.77	.	AC=1;AF=0.500;AN=2;DP=112;set=Intersection	GT:AD:AF:DP	0/1:26,86:0.77:112
chr2	71216246	rs2286980	A	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,29:0.85:34
chr2	71220793	rs2276684	T	G	3041.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:45,142:0.76:187
chr2	71221822	rs2302561	A	G	14039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DB;DP=930;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=-1.553;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:257,670:0.72:927
chr2	71297057	rs888352	C	T	4656.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:92,215:0.70:307
chr2	71297598	rs41285971	C	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.290;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:93,41:0.31:134
chr2	71297982	rs2287327	C	T	2314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=1.282;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:530,174:0.25:704
chr2	71305359	rs2302794	G	A	6877.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:94,314:0.77:408
chr2	71305456	rs6713	C	T	12335.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr2	71351487	rs11541017	G	A	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:63,182:0.74:245
chr2	71357417	rs2012479	C	A	18942.77	.	AC=2;AF=1.00;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	1/1:1,734:1.00:735
chr2	71357634	rs1813348	C	T	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	71357710	rs981947	G	C	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.314;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:204,79:0.28:283
chr2	71360144	rs10199088	A	C	1854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.970;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:267,112:0.30:379
chr2	71360625	rs1813160	G	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.462;QD=1.71;ReadPosRankSum=0.177;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:136,31:0.19:167
chr2	71360723	rs1813159	A	G	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=36.01;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	71360735	rs138856662	T	TTCC	2212.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=38.82;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	71361332	rs9941620	T	G	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-1.607;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:115,31:0.21:146
chr2	71365676	rs357756	G	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-2.536;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:115,34:0.23:149
chr2	71375065	rs357744	A	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.674;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chr2	71376999	rs6574	G	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.899;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr2	71415479	rs357780	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	71417065	rs357777	G	T	14624.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr2	71607539	rs17693408	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	71615571	rs2542529	C	T	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	71620818	rs6741436	C	T	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	71627539	rs3771371	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr2	71633275	rs3732233	T	C	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:53,128:0.71:181
chr2	71633389	rs6714975	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:27,57:0.68:84
chr2	71635931	rs12466025	G	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	71636036	rs12474072	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	71645828	rs4852783	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr2	71645890	rs4852784	G	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	71645946	rs4438512	G	A	110.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	71651939	rs12613800	T	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.248;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:105,28:0.21:133
chr2	71654175	rs1804020	G	A	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=2.072;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:319,85:0.21:404
chr2	71693943	rs61333801	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.359;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:75,15:0.17:90
chr2	71708825	rs71402983	T	TATCC,TATCCATCCATCC	1727.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=56;set=Intersection	GT:AF:DP	1/2:0.74,0.24:42
chr2	71738977	rs34997054	G	A	2696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.891;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:556,196:0.26:752
chr2	71747235	rs11675897	A	G	6548.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	71747432	rs11687223	G	T	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	71747851	rs12713755	T	C	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	71747899	rs12713756	G	A	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	71755380	rs4852800	A	G	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	71762232	rs4852801	C	T	23974.77	.	AC=2;AF=1.00;AN=2;DB;DP=925;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,913:1.00:913
chr2	71762310	rs4852802	A	G	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	71766487	rs7609409	G	A	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	71776345	rs736096	CA	TG	13180.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr2	71780215	rs2303596	T	C	17924.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:0,694:1.00:694
chr2	71780821	rs2303597	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	71795152	rs2288355	A	T	13487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;ReadPosRankSum=0.078;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:213,619:0.74:832
chr2	71796865	rs10205023	C	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	71797381	rs34061568	A	C	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.149;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:289,96:0.25:385
chr2	71797712	rs3764971	G	A	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:24,67:0.74:91
chr2	71801564	rs75127120	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:113,38:0.25:151
chr2	71817003	rs1473228	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.525;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr2	71828423	rs2303604	A	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	71829821	rs1529408	G	T	5374.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	71838597	rs2303606	C	A	11464.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:3,442:0.99:445
chr2	71847943	rs12995778	C	A	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	71871039	rs84181	A	G	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	71871236	rs84182	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	71891361	rs2303599	C	T	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	71901286	rs2559081	C	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	71906171	rs1863812	T	C	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	71907930	rs7558412	G	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	72692272	rs5832083	A	AAG	12411.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	72725735	.	G	GT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.171;QD=4.57;ReadPosRankSum=-0.435;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr2	72741728	rs367736783	TAA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr2	72741732	.	TAA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr2	72742083	.	GACAC	G,GAC	2356.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.65;MQRankSum=0.588;QD=25.90;ReadPosRankSum=0.940;SOR=0.495;set=HC	GT:AD:AF:DP	1/2:5,22,64:0.24,0.70:91
chr2	73151231	rs1561247	C	T	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	73195837	rs10565763	TTTCC	T	336.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	73226204	rs115898648	T	C	3327.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:58,163:0.74:221
chr2	73280303	rs13030434	G	A	625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.026;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-1.480;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:197,66:0.25:263
chr2	73339430	rs4143146	T	G	19156.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr2	73339708	rs1864488	G	A	35387.77	.	AC=2;AF=1.00;AN=2;DB;DP=1368;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,1358:1.00:1358
chr2	73429808	rs1864492	G	C	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.865;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:156,31:0.17:187
chr2	73430234	rs13432787	T	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	73435601	rs17008862	T	C	3388.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:72,162:0.69:234
chr2	73447736	rs2303905	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.922;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:76,19:0.20:95
chr2	73447775	rs2303904	A	G	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	73448174	rs2288632	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:8,47:0.85:55
chr2	73450139	rs17008885	A	T	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-0.874;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:243,63:0.21:306
chr2	73455747	rs2288631	C	T	2198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=1023;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.500;QD=2.15;ReadPosRankSum=-0.029;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:817,206:0.20:1023
chr2	73460293	rs70965722	AGGGCC	A	6787.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	73461483	rs1053329	C	A	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-1.848;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:230,88:0.28:318
chr2	73467676	rs3835072	GAA	G	10705.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr2	73471193	.	G	GT	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=9.306;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.346;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:126,62:0.33:188
chr2	73471653	rs1018342	T	G	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.182;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:238,79:0.25:317
chr2	73477317	rs72255992	CCT	C	1392.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr2	73477351	rs909065	T	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.860;QD=3.62;ReadPosRankSum=0.907;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:71,27:0.28:98
chr2	73478461	rs7851	A	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:185,69:0.27:254
chr2	73490412	rs34363861	A	G	5141.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=6.072;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.65;ReadPosRankSum=-1.218;SOR=0.063;set=HC	GT:AD:AF:DP	1/1:3,224:0.99:227
chr2	73492614	rs526106	A	T	6104.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:127,275:0.68:402
chr2	73613031	rs61156725	TGGAGGA	T,TGGAGGAGGA	2669.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.996;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.303;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.96;MQRankSum=0.016;QD=23.42;ReadPosRankSum=-0.412;SOR=1.005;set=HC	GT:AD:AF:DP	1/2:21,23,70:0.20,0.61:114
chr2	73613341	rs11126399	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:85,24:0.22:109
chr2	73649928	rs1881245	G	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.788;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:82,16:0.16:98
chr2	73650122	rs1881246	T	A	2727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.62;ReadPosRankSum=-2.298;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:21,118:0.85:139
chr2	73651967	rs3813227	C	T	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.065;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:124,47:0.27:171
chr2	73675019	rs66492706	CT	C	366.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr2	73675227	rs34628045	T	TCTC	11389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.031;QD=26.74;ReadPosRankSum=-0.731;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:147,279:0.65:426
chr2	73675669	rs2037814	T	G	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	73675844	rs7598901	C	T	7547.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:118,336:0.74:454
chr2	73677833	rs6546836	A	G	2300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-3.017;QD=3.30;ReadPosRankSum=-0.936;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:524,173:0.25:697
chr2	73677898	rs6546837	G	C	2191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.705;QD=3.78;ReadPosRankSum=1.210;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:432,148:0.26:580
chr2	73679280	rs6546838	A	G	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.229;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:192,73:0.28:265
chr2	73679866	rs10496192	T	C	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.149;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:223,62:0.22:285
chr2	73679990	rs6724782	T	A	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.474;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.698;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:301,81:0.21:382
chr2	73680508	rs6546839	G	C	1594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.548;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:322,114:0.26:436
chr2	73717567	rs2056486	G	T	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=4.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.341;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:215,64:0.23:279
chr2	73717656	rs10193972	A	G	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:281,100:0.26:381
chr2	73746923	rs11884776	C	T	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=1.154;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:68,34:0.33:102
chr2	73826710	.	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.644;QD=4.23;ReadPosRankSum=0.173;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:75,27:0.26:102
chr2	73828310	rs1320374	T	C	1749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=2.513;QD=17.85;ReadPosRankSum=-0.110;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:24,74:0.76:98
chr2	73828538	rs1052161	G	A	6852.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:128,297:0.70:425
chr2	73829294	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.454;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr2	73829372	rs1052162	C	T	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.488;QD=1.67;ReadPosRankSum=0.809;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:223,51:0.19:274
chr2	73830581	rs113408397	G	GA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.274;SOR=0.128;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	73868328	rs13538	A	G	3308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=1100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-4.770;QD=3.04;ReadPosRankSum=2.245;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:836,251:0.23:1087
chr2	73898118	rs7570683	C	T	1534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-0.783;QD=18.95;ReadPosRankSum=1.239;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:14,67:0.83:81
chr2	73898359	rs4341964	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr2	73899613	rs2421585	T	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	73899955	rs6725284	G	T	6828.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=3.865;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.96;ReadPosRankSum=-0.483;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:1,262:1.00:263
chr2	73900210	rs4637150	A	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	73900918	rs35051622	CT	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-0.171;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	73927931	rs4852974	A	G	6626.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:101,280:0.73:381
chr2	73928098	rs2001490	C	G	19465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=1335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.622;QD=14.86;ReadPosRankSum=2.089;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:406,904:0.69:1310
chr2	73928366	rs2012574	G	C	10734.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:216,503:0.70:719
chr2	73957124	rs7210	A	G	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:16,91:0.85:107
chr2	73957227	rs13003035	T	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr2	73993436	rs34279043	CA	C	76.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=2.200;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	73994074	rs2567599	G	A	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	74000701	rs2116367	C	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	74007136	rs2272051	T	C	11366.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:204,523:0.72:727
chr2	74007345	rs3813228	A	G	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:28,112:0.80:140
chr2	74087290	rs1025424	T	C	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.102;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:301,74:0.20:375
chr2	74128361	rs1653258	T	G	12996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.24;ReadPosRankSum=-0.045;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:102,314:0.75:416
chr2	74128369	rs1632564	G	A	13512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.76;ReadPosRankSum=-0.430;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:108,346:0.76:454
chr2	74128391	rs1721241	G	C	18451.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr2	74128433	rs1050146	C	T	27635.77	.	AC=2;AF=1.00;AN=2;DB;DP=1074;set=Intersection	GT:AD:AF:DP	1/1:0,1069:1.00:1069
chr2	74128660	.	TG	T	328	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=1;MGOF=2;MMLQ=28;MQ=59.91;NF=1;NR=13;PP=328;QD=23.6428571429;SC=GGGAAGGAAATGTGTGTGTGT;SbPval=0.63;Source=Platypus;TC=43;TCF=3;TCR=40;TR=14;WE=74128721;WS=74128650;set=Platypus	GT:AD:AF:DP	0/1:29,14:0.33:43
chr2	74128666	.	TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC	T	2647	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=0.9998;HP=2;HapScore=1;MGOF=2;MMLQ=26;MQ=59.47;NF=0;NR=6;PP=2647;QD=20;SC=GAAATGTGTGTGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=14;TCF=1;TCR=13;TR=6;WE=74128721;WS=74128650;set=Platypus	GT:AD:AF:DP	1/1:8,6:0.43:14
chr2	74129664	rs1653256	A	G	16097.77	.	AC=1;AF=0.500;AN=2;DB;DP=995;set=Intersection	GT:AD:AF:DP	0/1:243,751:0.76:994
chr2	74129712	rs1721243	C	G	15812.77	.	AC=1;AF=0.500;AN=2;DB;DP=977;set=Intersection	GT:AD:AF:DP	0/1:250,716:0.74:966
chr2	74129895	rs1721244	G	A	5042.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:75,225:0.75:300
chr2	74135380	rs756127	G	A	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=-1.224;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:28,62:0.69:90
chr2	74135797	rs702461	T	C	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	74135898	rs756128	A	G	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	74140581	rs891699	A	T	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	74140789	rs891698	T	C	11882.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr2	74140888	rs891697	A	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr2	74142164	rs35892339	GA	G	187.70	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr2	74146869	rs1721238	G	A	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	74153905	rs831526	C	T	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	74166053	rs62641680	G	A	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:64,202:0.76:266
chr2	74185876	rs4777	A	T	11847.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,467:1.00:467
chr2	74229975	rs113023108	G	T	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:49,115:0.70:164
chr2	74230310	rs142058377	CGTGCGTGTGT	C	4279.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:81,198:0.71:279
chr2	74328439	rs60481444	G	C	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:53,127:0.71:180
chr2	74362090	rs828879	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	74400314	rs190674876	C	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:137,41:0.23:178
chr2	74452259	rs828863	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr2	74481944	rs376191179	AT	A	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=1.044;QD=3.58;ReadPosRankSum=0.342;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr2	74489490	.	CT	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.054;QD=4.46;ReadPosRankSum=1.766;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	74649920	rs201792044	C	CA	81.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-0.893;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr2	74649921	rs11685929	C	A	1008.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.568;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=-3.285;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:23,54:0.70:77
chr2	74720002	rs4853026	C	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	74725144	rs6546908	T	C	11195.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr2	74756548	rs1183739	G	C	10144.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:151,464:0.75:615
chr2	74884611	rs205650	A	G	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr2	75061873	rs663504	C	G	9013.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.41;SOR=1.020;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr2	75099694	rs28363003	G	A	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.498;QD=3.23;ReadPosRankSum=1.186;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:117,31:0.21:148
chr2	75105798	rs604112	A	G	25222.77	.	AC=2;AF=1.00;AN=2;DB;DP=994;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,984:1.00:984
chr2	75113572	rs2306806	G	A	4812.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:112,227:0.67:339
chr2	75113657	rs2229626	C	T	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:56,135:0.71:191
chr2	75113789	rs2229627	C	G	7275.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:160,349:0.69:509
chr2	75115108	rs10194657	A	G	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:32,108:0.77:140
chr2	75116627	rs4853069	C	T	5401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-2.540;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:196,263:0.57:459
chr2	75185856	rs12366	G	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:221,76:0.26:297
chr2	75187281	rs77954588	C	T	4756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=2.808;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:79,222:0.74:301
chr2	75187573	rs3771799	G	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.713;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:118,32:0.21:150
chr2	75187793	rs3821312	A	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	75425623	rs2024512	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	75425728	rs6715729	A	G	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	75744918	rs2286995	T	C	8150.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr2	75745081	rs2286994	T	C	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr2	75873733	rs2286238	T	C	37.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,5:0.15:34
chr2	75874390	rs2286239	G	C	1353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.295;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:388,114:0.23:502
chr2	75879452	rs4853168	G	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.467;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	75881828	rs6759555	T	C	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	75882399	rs17689863	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr2	75897176	rs13429072	C	G	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr2	75907351	rs6722682	T	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:31,85:0.73:116
chr2	75915035	rs1803196	C	T	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	75919272	rs142689014	AATAT	A,AAT	1544.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=42.91;SOR=2.179;set=HC	GT:AD:AF:DP	1/2:0,28,8:0.78,0.22:36
chr2	75919292	rs182810843	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.005;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-1.507;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr2	75919294	rs116783069	T	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.80;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	75919296	rs111967112	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	75923413	rs7560262	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	75928300	rs6547019	G	T	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	75929238	rs3088180	C	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	75933590	rs10204609	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	75933830	rs6728499	T	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	75933858	rs34446032	A	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr2	75937801	rs10177030	C	T	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-1.414;QD=14.04;ReadPosRankSum=1.336;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:35,72:0.67:107
chr2	77748595	rs7571330	T	C	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=7.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.42;ReadPosRankSum=-0.779;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:11,60:0.85:71
chr2	79254261	rs452267	T	C	12452.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:1,462:1.00:463
chr2	79255325	rs2290079	G	C	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	79255426	rs383969	G	C	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	79312414	rs3739144	G	A	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	79313815	rs2073445	G	T	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr2	79314094	rs6723688	G	T	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	79348129	rs11339710	GA	G	872.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-0.744;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:21,75:0.78:96
chr2	79350186	rs3739142	G	A	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:29,77:0.73:106
chr2	79350347	rs12228	A	G	10696.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,417:1.00:417
chr2	79350505	rs12072	C	T	1346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.263;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=-0.063;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:24,61:0.72:85
chr2	79385913	rs2272110	G	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.387;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:77,31:0.29:108
chr2	79386560	rs56413330	G	A	4749.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:95,219:0.70:314
chr2	79422965	rs1434199	C	G	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	79423062	rs149273901	TTTTG	T	550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.904;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr2	79750282	rs72921161	A	G	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:21,60:0.74:81
chr2	79750543	rs10205858	C	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	79914570	rs35164413	C	CT	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.058;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:13,32:0.71:45
chr2	80540576	rs139283309	A	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr2	80772972	rs2276659	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-0.274;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:84,15:0.15:99
chr2	80801524	rs2276661	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=-1.849;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	84518438	rs1968722	T	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,29:0.28:104
chr2	84650707	rs2832	A	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	84676163	rs10202632	C	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	84676886	rs56733272	TAAA	T	179.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.95;ReadPosRankSum=1.036;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	84755996	rs35980296	A	AT	1836.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:11,95:0.90:106
chr2	84756049	rs4832089	G	A	7327.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:1,285:1.00:286
chr2	84756341	rs4832090	T	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	84771480	rs1037863	G	A	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	84771567	rs1542477	C	T	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	84775373	rs199761452	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.562;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:74,24:0.24:98
chr2	84800605	rs11891970	C	A	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	84806553	rs6547569	G	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	84822715	rs6761632	C	T	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.71;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	84834063	rs4276039	T	C	7719.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.891;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	84834237	rs4441485	T	C	3793.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=-0.675;SOR=0.416;set=HC	GT:AD:AF:DP	1/1:1,149:0.99:150
chr2	84897361	rs12470102	T	A	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	84897517	rs1881095	A	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	84899360	rs4832106	G	A	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	85066465	.	GA	G	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.864;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr2	85108252	rs34667238	G	GC	801.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=34.86;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	85198401	.	CCCG	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=0.965;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:65,8:0.11:73
chr2	85360828	.	GGGC	G	3005.73	.	AC=2;AF=1.00;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=42.94;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	85532205	rs6741339	C	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	85549868	rs4240199	A	G	12910.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.554;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.68;ReadPosRankSum=1.665;SOR=0.528;set=HC	GT:AD:AF:DP	1/1:1,434:1.00:435
chr2	85549868	.	AGGGGAA	GGGGGAA,GGGGGAG	2196	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=6;MMLQ=26;MQ=59.78;NF=70,19;NR=107,25;PP=2196,439;QD=12.6032271895;SC=GTTAGGACTTAGGGGAAAAAA;SbPval=0.53;Source=Platypus;TC=178;TCF=70;TCR=108;TR=177,44;WE=85549882;WS=85549858;set=Platypus	GT:AF:DP	0/1:0.99:178
chr2	85549874	rs3637	A	G	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.732;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:327,86:0.21:413
chr2	85552186	rs7572750	C	A	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	85552261	rs2292653	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr2	85553784	rs1044973	C	T	7249.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr2	85554080	rs4247303	G	A	20539.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.306;ClippingRankSum=0.000;DB;DP=790;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.57;ReadPosRankSum=0.700;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:1,772:1.00:773
chr2	85570186	rs4832001	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr2	85570942	rs9309620	G	C	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:37,66:0.64:103
chr2	85571710	rs4832171	A	G	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	85573033	rs908302	G	A	9762.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr2	85573049	rs908304	G	A	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.268;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:246,94:0.28:340
chr2	85576451	rs10590946	GTC	G	3413.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:25,84:0.77:109
chr2	85589223	rs368398168	TA	T	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.030;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr2	85622059	rs6886	T	C	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:69,180:0.72:249
chr2	85662636	rs7589663	C	T	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:36,114:0.76:150
chr2	85662650	rs6547618	A	G	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:31,94:0.75:125
chr2	85769246	rs1078005	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	85781318	rs1254896	T	G	6622.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr2	85788140	rs1254898	C	T	3695.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:64,171:0.73:235
chr2	85788402	rs55829881	AC	A	2903.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:10,117:0.92:127
chr2	85808594	rs11326680	CA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.800;QD=1.61;ReadPosRankSum=2.471;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr2	85823167	rs35880310	TG	T	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.683;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr2	85824078	rs41290037	C	T	2953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.313;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-0.801;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:392,102:0.21:494
chr2	85824084	rs2232748	G	C	3054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.703;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-1.517;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:385,106:0.22:491
chr2	85826894	rs150451323	TCTC	T	313.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	85828014	rs6733550	T	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.739;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr2	85843348	rs11544042	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.883;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr2	85848747	rs35865728	CT	C	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=7.326;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.722;QD=2.44;ReadPosRankSum=-0.919;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:93,48:0.34:141
chr2	85866577	.	C	CT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=3.049;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.141;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr2	85890753	rs762548	A	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.953;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:173,60:0.26:233
chr2	85890771	rs893159	T	G	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	85893616	rs147140768	CTG	C	282.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr2	85893741	rs1130866	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:198,73:0.27:271
chr2	85921992	rs2043760	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr2	85924729	rs11127	C	T	5471.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:72,259:0.78:331
chr2	85924899	rs1437742	T	A	406.28	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr2	85925529	rs4240200	A	G	6464.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:149,285:0.66:434
chr2	85925667	rs4240201	G	A	23827.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:267,608:0.69:875
chr2	85925680	rs4240202	T	G	23690.77	.	AC=1;AF=0.500;AN=2;DB;DP=879;set=Intersection	GT:AD:AF:DP	0/1:265,612:0.70:877
chr2	85925756	rs7908	C	G	12100.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:202,557:0.73:759
chr2	85925848	rs12845	C	G	5262.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:89,246:0.73:335
chr2	85981761	rs17851881	T	C	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr2	86075582	rs11694145	C	T	5148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=-0.496;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:87,239:0.73:326
chr2	86088311	rs1138484	T	C	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:13,54:0.81:67
chr2	86094686	rs62147538	C	T	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:14,71:0.84:85
chr2	86258784	rs2278536	T	G	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	86259443	rs2276626	C	T	35218.77	.	AC=2;AF=1.00;AN=2;DB;DP=1374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,1373:1.00:1373
chr2	86272191	rs7572386	G	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	86275985	rs2289239	A	G	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	86279837	rs35618928	G	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	86292656	rs311563	C	T	5338.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	86302103	rs3815840	A	G	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	86304932	rs67550160	GCGCACACACACACACA	GCACA,G	1528.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=48;set=Intersection	GT:AF:DP	1/1:1.00:37
chr2	86305123	rs2288117	T	C	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr2	86310110	rs2288118	C	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	86315741	rs2288120	C	T	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	86317037	rs4832242	G	C	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	86332809	rs4832245	G	A	14414.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr2	86334199	rs2367201	G	A	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	86343476	rs4832022	C	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	86343494	rs4832248	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	86344367	rs2059353	T	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	86346308	rs6715623	G	A	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	86352010	rs4832250	G	T	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	86352785	rs4618054	G	A	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	86352825	rs6740228	C	T	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	86359405	rs1559515	G	T	6204.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr2	86362204	rs7606421	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	86363074	rs3770069	A	G	10190.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:2,405:1.00:407
chr2	86363855	rs7558040	G	C	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	86364706	rs56274257	TG	T	998.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	86371883	rs8244	T	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	86373498	rs112351810	A	AT	196.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.05;ReadPosRankSum=0.812;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr2	86385668	rs1057893	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	86385682	rs34945759	TC	T	398.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-1.204;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr2	86385886	rs6739460	A	G	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	86398074	rs2288115	A	G	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	86398291	rs2288113	G	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	86406438	rs6547663	A	G	113.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	86408385	rs6731995	A	G	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	86420255	rs11897696	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	86422416	rs17551822	T	C	26265.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,589:1.00:589
chr2	86422421	rs17551815	T	G	26758.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,624:1.00:624
chr2	86433240	rs10901	C	T	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	86434569	rs9309634	T	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	86437551	rs7565645	T	G	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	86479035	rs12988844	A	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=2.124;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	86479287	rs17438687	G	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.415;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:115,34:0.23:149
chr2	86481835	rs2276625	C	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.866;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:118,30:0.20:148
chr2	86491245	rs1863056	C	T	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-1.265;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:188,47:0.20:235
chr2	86509267	rs1863058	G	A	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.138;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:210,51:0.20:261
chr2	86509388	rs1863059	T	G	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:145,48:0.25:193
chr2	86683642	rs2030259	A	G	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	86691250	rs12714187	G	A	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	86705565	rs2292887	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.190;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr2	86707504	rs4832290	T	C	2740.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.368;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.299;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=1.880;SOR=0.463;set=HC	GT:AD:AF:DP	1/1:1,108:0.99:109
chr2	86709230	rs193921056	GTGTT	G	6597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=4.335;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.048;QD=27.26;ReadPosRankSum=-0.872;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:75,167:0.69:242
chr2	86719151	rs11883727	A	C	3623.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:47,164:0.78:211
chr2	86737649	rs966477	G	A	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	86756209	rs1036940	C	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	86756280	rs9284788	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr2	86850022	rs396354	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:86,36:0.30:122
chr2	86947783	rs76239019	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr2	86979093	rs10186663	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=2.284;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr2	86992337	rs3840984	T	TAA	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.294;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:78,14:0.15:92
chr2	86998659	rs56328788	CT	C	899.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.225;QD=3.69;ReadPosRankSum=0.388;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:140,104:0.43:244
chr2	87015633	rs71378806	T	TGA	1051.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:94,34:0.27:128
chr2	87017440	rs13017928	G	A	2885.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:47,132:0.74:179
chr2	87042675	rs55989978	G	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:26,81:0.76:107
chr2	87048702	rs13001400	T	G	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.965;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:77,25:0.25:102
chr2	87060318	.	C	CT	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.026;QD=4.78;ReadPosRankSum=2.218;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:33,27:0.45:60
chr2	87069431	rs4514875	C	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=46.48;MQRankSum=-1.598;QD=2.79;ReadPosRankSum=-1.522;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr2	87089092	rs116604156	G	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-3.058;QD=1.49;ReadPosRankSum=-2.009;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr2	87092865	rs10195435	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-12.450;QD=1.95;ReadPosRankSum=2.291;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:149,38:0.20:187
chr2	87303060	rs79162177	C	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:80,36:0.31:116
chr2	87357172	rs188041687	T	G	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:43,124:0.74:167
chr2	88272798	rs201020598	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=46.93;MQRankSum=-2.170;QD=11.82;ReadPosRankSum=-0.629;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	88328163	rs68101803	C	CTT	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.55;ReadPosRankSum=-0.389;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,22:0.88:25
chr2	88328208	rs12328217	G	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	88384084	rs920578	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.999;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr2	88387403	rs1542088	C	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr2	88387557	rs1542087	A	C	2242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.586;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:449,165:0.27:614
chr2	88396029	rs114329603	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr2	88396080	rs2919883	A	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=1.080;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr2	88396120	rs2919882	G	A	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.669;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:131,51:0.28:182
chr2	88396123	rs2970912	C	G	1753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-0.751;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:134,53:0.28:187
chr2	88396174	rs2919881	T	C	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.041;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:218,85:0.28:303
chr2	88402511	rs1866946	C	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr2	88402560	rs894197	G	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:89,16:0.15:105
chr2	88406108	rs2919862	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr2	88407959	rs2970918	T	C	14548.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr2	88409717	rs200741830	T	TGA	435.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.52;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	88410102	rs2289497	C	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	88411605	rs2919865	A	T	9563.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr2	88411793	rs2970888	C	A	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	88422758	rs2197076	G	A	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	88422761	rs181519237	T	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	88472791	rs4129190	G	A	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:37,106:0.74:143
chr2	88474370	rs2139100	A	G	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:47,150:0.76:197
chr2	88484808	rs2292869	C	A	5409.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:76,246:0.76:322
chr2	88485392	rs1878810	G	C	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:28,93:0.77:121
chr2	88748390	rs4972212	A	T	3908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=3.375;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:70,183:0.72:253
chr2	88751751	rs11456039	A	AG	1063.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	88825315	rs368206812	GT	G	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.564;QD=2.11;ReadPosRankSum=3.571;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr2	88826071	rs58882124	G	C	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.173;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:274,83:0.23:357
chr2	88861757	rs1800980	T	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr2	88870632	rs4972221	A	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	88874891	rs1805165	C	A	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	88879131	rs1805164	T	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.954;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=2.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.597;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:268,75:0.22:343
chr2	88895123	rs13045	T	C	8220.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr2	88895351	rs7571971	T	C	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	88926729	rs72416210	CCAG	C	5678.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	88997878	rs908277	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	88999476	rs1158603	G	A	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	89160889	rs232224	G	T	6262.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:127,278:0.69:405
chr2	89161322	rs232223	C	G	7439.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:127,347:0.73:474
chr2	89161547	rs232222	A	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr2	89185056	rs145064364	C	G	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:27,148:0.85:175
chr2	89185654	rs111711225	A	G	4781.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:87,221:0.72:308
chr2	89196757	rs3843805	G	A	4632.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:64,216:0.77:280
chr2	89196906	rs4588191	A	C	3496.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:67,152:0.69:219
chr2	89197190	rs55661410	C	T	3731.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:82,173:0.68:255
chr2	89246942	rs201861379	T	C	13878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.300;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-8.066;QD=27.00;ReadPosRankSum=-3.922;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:168,346:0.67:514
chr2	89246948	rs141786718	A	G	14308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.626;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-8.294;QD=27.46;ReadPosRankSum=-1.720;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:177,344:0.66:521
chr2	89246951	rs10865492	C	G	14120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.385;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-8.319;QD=27.42;ReadPosRankSum=-0.659;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:178,337:0.65:515
chr2	89246954	rs139861548	C	A	13724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.401;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-8.449;QD=27.12;ReadPosRankSum=0.218;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:178,328:0.65:506
chr2	89246956	rs139707902	T	C	13230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.521;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-8.388;QD=26.41;ReadPosRankSum=0.963;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:177,324:0.65:501
chr2	89247310	rs112599788	G	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr2	89266057	rs112636307	C	T	11287.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:189,515:0.73:704
chr2	89292182	rs59175543	A	G	14981.77	.	AC=1;AF=0.500;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	0/1:183,678:0.79:861
chr2	89292272	rs140182196	T	C	11292.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:189,502:0.73:691
chr2	89292401	rs143871003	T	C	3043.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;MQ=58.92;set=Intersection	GT:AD:AF:DP	0/1:39,130:0.77:169
chr2	89309735	rs80322626	A	G	12521.77	.	AC=1;AF=0.500;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	0/1:183,571:0.76:754
chr2	89309762	rs77800356	T	G	11906.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:172,542:0.76:714
chr2	89442700	rs112318657	G	C	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:17,74:0.81:91
chr2	89512775	rs145409842	T	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr2	89999277	rs377357617	T	C	127.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.17;MQRankSum=-1.465;QD=18.15;ReadPosRankSum=0.792;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	90008208	rs138920656	T	G	7575.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	90008287	rs147071425	A	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr2	90043509	rs201839533	C	T	31.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr2	90108416	rs859744	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.076;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr2	90108778	rs859745	G	T	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=3.271;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:153,36:0.19:189
chr2	90193417	rs1724244	A	G	2077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=46.77;MQRankSum=-3.044;QD=20.78;ReadPosRankSum=0.434;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:47,53:0.53:100
chr2	90193429	rs1724243	T	C	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.78;MQRankSum=-3.087;QD=20.38;ReadPosRankSum=-1.042;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:48,57:0.54:105
chr2	90229260	rs842173	T	C	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:31,139:0.82:170
chr2	90229606	rs2847976	G	A	4554.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:72,205:0.74:277
chr2	90259848	rs842155	T	G	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:71,212:0.75:283
chr2	90259965	rs842156	T	C	9399.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:151,425:0.74:576
chr2	91767507	rs2580541	T	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.223;QD=1.52;ReadPosRankSum=-1.894;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:205,43:0.17:248
chr2	91809227	rs2536993	A	G	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:229,106:0.32:335
chr2	91809324	rs2536994	C	T	2832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.879;ClippingRankSum=0.000;DB;DP=1222;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-31.015;QD=2.33;ReadPosRankSum=4.829;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:968,248:0.20:1216
chr2	91809385	rs55812636	C	G	2536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.850;ClippingRankSum=0.000;DB;DP=1199;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-27.245;QD=2.12;ReadPosRankSum=-2.295;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:966,232:0.19:1198
chr2	91809404	rs55918232	G	C	2571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.180;ClippingRankSum=0.000;DB;DP=1051;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-24.916;QD=2.45;ReadPosRankSum=-3.349;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:836,215:0.20:1051
chr2	91809456	rs2191971	T	G	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=3.427;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-18.066;QD=1.69;ReadPosRankSum=7.239;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:532,118:0.18:650
chr2	91809468	.	C	CTAA	3360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DP=574;ExcessHet=3.0103;FS=3.286;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-17.739;QD=5.88;ReadPosRankSum=8.318;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:459,113:0.20:572
chr2	91809470	rs2386154	G	A	3376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.719;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-17.764;QD=6.08;ReadPosRankSum=7.795;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:441,114:0.21:555
chr2	91809472	.	G	GTGACTAACAA	3463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.473;ClippingRankSum=0.000;DP=540;ExcessHet=3.0103;FS=3.170;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-17.569;QD=6.43;ReadPosRankSum=7.683;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:426,113:0.21:539
chr2	91925022	rs28577290	C	A	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=15.446;MLEAC=1;MLEAF=0.500;MQ=46.76;MQRankSum=-5.219;QD=4.56;ReadPosRankSum=5.329;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:97,38:0.28:135
chr2	91940522	rs201177880	C	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=15.42;ReadPosRankSum=-0.287;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	91955209	rs202182230	G	A	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.58;MQRankSum=-1.752;QD=17.62;ReadPosRankSum=-0.960;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:8,29:0.78:37
chr2	95537245	rs4854234	C	G	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:26,74:0.74:100
chr2	95537572	rs4854235	C	T	8311.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:180,383:0.68:563
chr2	95537622	rs11164112	A	G	8210.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:165,379:0.70:544
chr2	95537871	rs11483811	G	GC	786.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr2	95830652	rs6719142	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.737;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	95830737	rs11395151	C	CA	1606.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	95846158	rs3112230	T	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	95847040	rs10578519	TGCG	T	10557.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	95944902	rs61086044	A	AC	3590.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	95944948	.	A	G	226.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr2	95945568	rs7585914	G	A	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	95945830	rs7586229	G	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	95947085	rs12992066	A	G	17245.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:0,677:1.00:677
chr2	95952177	rs7602232	C	G	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	95963242	rs2248415	C	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=4.958;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	96012907	rs7602807	C	G	10965.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr2	96048862	rs58372613	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.671;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.635;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:65,13:0.17:78
chr2	96076409	rs6577014	C	T	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	96504594	rs11676926	C	T	4477.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:121,211:0.64:332
chr2	96514492	rs150195180	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.98;MQRankSum=-2.186;QD=30.43;ReadPosRankSum=3.012;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	96555522	rs12471925	C	A	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=5.112;MLEAC=1;MLEAF=0.500;MQ=53.17;MQRankSum=-7.203;QD=9.75;ReadPosRankSum=-3.758;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:52,48:0.48:100
chr2	96601123	rs199554027	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.69;MQRankSum=-1.645;QD=7.75;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	96601137	rs200886605	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.69;MQRankSum=-1.645;QD=7.75;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	96601153	rs202028585	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.69;MQRankSum=-1.645;QD=7.95;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	96601236	.	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=4.247;MLEAC=1;MLEAF=0.500;MQ=46.54;MQRankSum=-6.029;QD=0.29;ReadPosRankSum=-0.527;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:238,37:0.13:275
chr2	96601240	rs199988716	G	A	3622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.500;MQ=46.53;MQRankSum=-13.212;QD=12.76;ReadPosRankSum=-2.641;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:148,136:0.48:284
chr2	96601296	rs145876416	A	ATGATTAAT	7567.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=46.69;MQRankSum=-15.509;QD=19.66;ReadPosRankSum=2.063;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:192,193:0.50:385
chr2	96601312	rs201144574	G	A	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:278,129:0.32:407
chr2	96601345	rs149389865	T	C	3105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.500;MQ=46.72;MQRankSum=-11.031;QD=11.95;ReadPosRankSum=2.097;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:127,133:0.51:260
chr2	96601364	rs148485539	C	T	3829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=46.75;MQRankSum=-9.666;QD=19.05;ReadPosRankSum=3.067;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:94,107:0.53:201
chr2	96604473	rs75003856	T	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=0.198;QD=2.18;ReadPosRankSum=-0.007;SOR=0.222;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr2	96604516	rs62154560	C	T	5597.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:44,194:0.82:238
chr2	96604548	.	T	C	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DP=477;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-6.221;QD=0.92;ReadPosRankSum=2.113;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:391,77:0.16:468
chr2	96604576	.	C	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DP=741;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-6.879;QD=0.43;ReadPosRankSum=3.271;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:624,103:0.14:727
chr2	96604591	rs62154561	A	G	14315.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:225,556:0.71:781
chr2	96604632	rs62154562	A	T	10421.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:216,417:0.66:633
chr2	96604679	rs62154563	C	T	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:128,141:0.52:269
chr2	96604730	rs113311459	T	C	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.693;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=14.089;MLEAC=1;MLEAF=0.500;MQ=49.07;MQRankSum=-5.574;QD=9.15;ReadPosRankSum=-0.571;SOR=3.587;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr2	96605568	rs74785109	C	T	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	96607003	.	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-4.923;QD=0.69;ReadPosRankSum=1.689;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr2	96610329	rs201777230	G	C	2295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=-18.665;QD=6.07;ReadPosRankSum=-7.480;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:242,136:0.36:378
chr2	96610395	rs147285461	C	CA	5854.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.658;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=54.31;MQRankSum=-24.763;QD=8.21;ReadPosRankSum=9.695;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:414,299:0.42:713
chr2	96610399	rs116594293	C	A	11355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.613;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-25.071;QD=15.82;ReadPosRankSum=9.015;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:415,303:0.42:718
chr2	96610410	rs77220524	T	A	11415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.805;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-25.393;QD=15.70;ReadPosRankSum=5.884;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:424,303:0.42:727
chr2	96610413	rs74491979	C	T	11409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.129;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-25.393;QD=15.69;ReadPosRankSum=4.884;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:424,303:0.42:727
chr2	96610420	rs78473403	G	T	11457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.001;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-24.906;QD=16.25;ReadPosRankSum=1.794;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:402,303:0.43:705
chr2	96610479	rs200773992	A	G	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-14.035;QD=1.90;ReadPosRankSum=-8.265;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:174,42:0.19:216
chr2	96610759	rs377016561	T	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.774;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=35.349;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-9.501;QD=6.85;ReadPosRankSum=-3.953;SOR=5.255;set=HC	GT:AD:AF:DP	0/1:81,21:0.21:102
chr2	96610768	rs376183764	T	G	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.571;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=62.700;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-11.059;QD=8.60;ReadPosRankSum=-5.111;SOR=6.410;set=HC	GT:AD:AF:DP	0/1:91,38:0.29:129
chr2	96610787	rs112708872	C	CA	4850.73	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:132,102:0.44:234
chr2	96610810	rs373033382	AG	A	949.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-9.614;QD=2.17;ReadPosRankSum=-0.784;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:323,114:0.26:437
chr2	96610836	rs11893977	T	C	17995.77	.	AC=1;AF=0.500;AN=2;DB;DP=887;set=Intersection	GT:AD:AF:DP	0/1:281,599:0.68:880
chr2	96610899	rs62154593	T	C	51149.77	.	AC=1;AF=0.500;AN=2;DB;DP=1684;set=Intersection	GT:AD:AF:DP	0/1:401,1276:0.76:1677
chr2	96610921	rs62154594	T	G	50974.77	.	AC=1;AF=0.500;AN=2;DB;DP=1608;set=Intersection	GT:AD:AF:DP	0/1:349,1252:0.78:1601
chr2	96610952	rs62154595	T	C	26121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=1193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-9.021;QD=22.06;ReadPosRankSum=3.052;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:230,954:0.81:1184
chr2	96610952	.	TAACATG	CAACATG,CAACATT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=53;MMLQ=26;MQ=57.99;NF=216,52;NR=328,88;PP=2962,1635;QD=20;SC=GGTTTAAGAATAACATGCAGC;SbPval=0.56;Source=Platypus;TC=655;TCF=263;TCR=392;TR=544,140;WE=96610966;WS=96610942;set=Platypus	GT:AF:DP	0/1:0.83:655
chr2	96610958	rs79852024	G	T	2622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=1107;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-4.550;QD=2.38;ReadPosRankSum=0.865;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:872,228:0.21:1100
chr2	96611013	rs202100353	A	T	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.095;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-0.499;QD=2.94;ReadPosRankSum=1.581;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:228,60:0.21:288
chr2	96611018	rs62154596	G	A	6559.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:43,210:0.83:253
chr2	96611038	.	T	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.514;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.15;MQRankSum=-0.971;QD=3.88;ReadPosRankSum=-0.332;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:107,28:0.21:135
chr2	96614212	rs4907288	A	G	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr2	96616310	rs139114553	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.75;MQRankSum=-3.517;QD=7.82;ReadPosRankSum=1.473;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr2	96616313	.	A	ATT	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.87;MQRankSum=-6.076;QD=18.68;ReadPosRankSum=1.606;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr2	96616327	.	C	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.42;MQRankSum=-3.283;QD=4.54;ReadPosRankSum=1.841;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr2	96616348	rs62154609	C	G	1681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.696;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=8.047;MLEAC=1;MLEAF=0.500;MQ=53.28;MQRankSum=-9.357;QD=16.82;ReadPosRankSum=1.616;SOR=1.634;set=HC	GT:AD:AF:DP	0/1:57,43:0.43:100
chr2	96616353	rs150793442	GT	G	436.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=5.703;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-5.056;QD=3.80;ReadPosRankSum=1.133;SOR=1.544;set=HC	GT:AD:AF:DP	0/1:95,20:0.17:115
chr2	96616354	rs78161475	T	C	1001.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.954;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-6.467;QD=8.71;ReadPosRankSum=-0.571;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr2	96616355	rs62154610	T	C	424.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=5.137;MLEAC=1;MLEAF=0.500;MQ=53.69;MQRankSum=-5.177;QD=3.57;ReadPosRankSum=0.425;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:97,22:0.18:119
chr2	96616378	rs62154611	C	T	3371.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:114,116:0.50:230
chr2	96616442	rs74960926	C	A	8580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.500;MQ=54.14;MQRankSum=-15.268;QD=21.45;ReadPosRankSum=3.297;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:180,220:0.55:400
chr2	96616448	rs76503749	G	T	8521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.500;MQ=54.04;MQRankSum=-14.333;QD=21.57;ReadPosRankSum=3.920;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:179,216:0.55:395
chr2	96616485	rs78218362	C	G	6107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=53.60;MQRankSum=-10.211;QD=17.96;ReadPosRankSum=1.048;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:161,179:0.53:340
chr2	96616501	.	C	CAA	2634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=7.818;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=-7.368;QD=9.98;ReadPosRankSum=-0.898;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:140,124:0.47:264
chr2	96616505	rs373114066	AGC	A	2628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=7.728;MLEAC=1;MLEAF=0.500;MQ=52.87;MQRankSum=-7.002;QD=9.88;ReadPosRankSum=-2.990;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:144,122:0.46:266
chr2	96616532	rs112676430	T	G	1423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.184;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=12.461;MLEAC=1;MLEAF=0.500;MQ=51.16;MQRankSum=-2.126;QD=10.32;ReadPosRankSum=-4.544;SOR=1.729;set=HC	GT:AD:AF:DP	0/1:97,41:0.30:138
chr2	96616571	rs146478446	C	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.971;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=8.857;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-4.483;QD=0.84;ReadPosRankSum=-1.939;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:75,8:0.10:83
chr2	96616576	rs143490798	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.613;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=6.386;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=-4.241;QD=0.87;ReadPosRankSum=-1.034;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:73,7:0.09:80
chr2	96616580	rs201649771	A	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.667;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=6.297;MLEAC=1;MLEAF=0.500;MQ=46.93;MQRankSum=-3.975;QD=1.13;ReadPosRankSum=-0.528;SOR=1.921;set=HC	GT:AD:AF:DP	0/1:72,6:0.08:78
chr2	96616607	rs141967446	G	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.500;MQ=47.49;MQRankSum=-4.571;QD=2.84;ReadPosRankSum=-0.076;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:44,8:0.15:52
chr2	96616622	rs112338915	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.318;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=15.608;MLEAC=1;MLEAF=0.500;MQ=46.90;MQRankSum=-4.212;QD=7.76;ReadPosRankSum=-1.188;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr2	96616654	rs75283408	C	A	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.483;MLEAC=1;MLEAF=0.500;MQ=49.07;MQRankSum=-2.145;QD=22.02;ReadPosRankSum=-1.207;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	96616667	rs77249402	A	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=50.16;MQRankSum=-1.954;QD=21.79;ReadPosRankSum=0.048;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:19,25:0.57:44
chr2	96616690	rs111409549	T	C	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=52.65;MQRankSum=-0.736;QD=24.80;ReadPosRankSum=1.221;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr2	96616947	rs74369410	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-5.554;QD=7.14;ReadPosRankSum=-0.626;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr2	96616951	rs74904196	A	G	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-5.812;QD=12.88;ReadPosRankSum=-1.510;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr2	96616957	rs76255864	A	G	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=54.03;MQRankSum=-6.552;QD=12.61;ReadPosRankSum=-2.324;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr2	96616967	rs77784489	G	C	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.760;MLEAC=1;MLEAF=0.500;MQ=54.70;MQRankSum=-7.464;QD=11.53;ReadPosRankSum=-0.608;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr2	96616976	rs76077075	A	G	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.172;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=7.259;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=-7.560;QD=13.67;ReadPosRankSum=-1.391;SOR=1.657;set=HC	GT:AD:AF:DP	0/1:48,28:0.37:76
chr2	96616979	rs80105408	G	C	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.502;MLEAC=1;MLEAF=0.500;MQ=54.88;MQRankSum=-7.460;QD=15.27;ReadPosRankSum=-1.564;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:48,30:0.38:78
chr2	96616997	rs74701498	T	G	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr2	96617023	rs78346055	C	A	2981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=4.605;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-7.018;QD=17.34;ReadPosRankSum=1.803;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:100,72:0.42:172
chr2	96617025	rs72492186	C	A	3038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.437;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=4.436;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-6.642;QD=16.98;ReadPosRankSum=0.733;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:100,79:0.44:179
chr2	96617069	.	A	G	1088	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=92;MMLQ=25;MQ=56.08;NF=46;NR=40;PP=1088;QD=13.0554792157;SC=AGTAAATACTACAATAGGCAG;SbPval=0.62;Source=Platypus;TC=159;TCF=83;TCR=76;TR=86;WE=96617077;WS=96617059;set=Platypus	GT:AD:AF:DP	0/1:73,86:0.54:159
chr2	96617090	rs72935833	A	G	7099.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:193,191:0.50:384
chr2	96617106	rs76943414	A	C	7001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-7.550;QD=18.33;ReadPosRankSum=0.587;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:202,180:0.47:382
chr2	96617111	rs76474100	G	A	6786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.372;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-7.500;QD=17.91;ReadPosRankSum=0.683;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:202,177:0.47:379
chr2	96617113	rs80297803	G	A	6876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-7.577;QD=18.24;ReadPosRankSum=1.083;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:202,175:0.46:377
chr2	96617125	rs75585230	T	C	6417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=2.810;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-7.837;QD=17.98;ReadPosRankSum=1.799;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:196,161:0.45:357
chr2	96617132	rs75695780	T	C	5987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-7.504;QD=17.66;ReadPosRankSum=2.129;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:190,149:0.44:339
chr2	96617155	rs76752473	A	G	5022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-8.304;QD=17.38;ReadPosRankSum=0.205;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:154,135:0.47:289
chr2	96617194	rs75924615	A	G	3005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=4.227;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-7.919;QD=15.41;ReadPosRankSum=-0.902;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:111,84:0.43:195
chr2	96617209	rs74343816	G	T	2397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-7.055;QD=15.99;ReadPosRankSum=-2.726;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:85,65:0.43:150
chr2	96617228	rs78924901	T	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.21;MQRankSum=-5.797;QD=3.39;ReadPosRankSum=-1.417;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:64,23:0.26:87
chr2	96617231	rs2443879	G	A	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.65;MQRankSum=-8.069;QD=15.05;ReadPosRankSum=-3.052;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:44,32:0.42:76
chr2	96617256	rs2438948	A	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.423;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=7.811;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-5.784;QD=5.19;ReadPosRankSum=0.042;SOR=2.546;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr2	96617262	rs199817817	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.398;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-5.234;QD=5.23;ReadPosRankSum=-0.224;SOR=2.472;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr2	96619612	rs143611798	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=10.148;MLEAC=1;MLEAF=0.500;MQ=51.94;MQRankSum=-5.395;QD=3.61;ReadPosRankSum=0.138;SOR=2.862;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr2	96619641	rs200910276	A	C	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.870;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=44.843;MLEAC=1;MLEAF=0.500;MQ=54.21;MQRankSum=-9.778;QD=6.04;ReadPosRankSum=-0.246;SOR=4.604;set=HC	GT:AD:AF:DP	0/1:123,33:0.21:156
chr2	96619642	rs201891130	A	T	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.851;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=44.472;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-9.800;QD=5.89;ReadPosRankSum=0.074;SOR=4.571;set=HC	GT:AD:AF:DP	0/1:127,33:0.21:160
chr2	96619688	rs74946480	T	G	5050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.334;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=12.482;MLEAC=1;MLEAF=0.500;MQ=53.26;MQRankSum=-15.831;QD=9.34;ReadPosRankSum=-3.762;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:303,238:0.44:541
chr2	96619734	rs62154618	C	T	10703.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-12.361;QD=14.80;ReadPosRankSum=-0.170;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:408,315:0.44:723
chr2	96619735	rs200095242	A	G	3545.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=797;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-5.962;QD=4.83;ReadPosRankSum=-0.428;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:506,228:0.31:734
chr2	96619774	rs77522461	G	A	9607.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:264,324:0.55:588
chr2	96619799	rs145806545	A	C	9627.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:185,308:0.62:493
chr2	96619832	rs79037822	A	G	5578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.840;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=17.808;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-6.580;QD=21.71;ReadPosRankSum=-1.004;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:105,152:0.59:257
chr2	96619837	rs77007933	CA	GC	5827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=15.097;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-6.495;QD=25.12;ReadPosRankSum=-1.314;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:91,141:0.61:232
chr2	96619853	rs201388512	T	C	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:75,59:0.44:134
chr2	96619873	rs111807008	C	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr2	96780716	rs2229169	T	G	4455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=1239;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-2.109;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:899,316:0.26:1215
chr2	96780986	rs29000568	C	CTCCTCCTCT	5428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DB;DP=1104;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=7.682;QD=5.54;ReadPosRankSum=3.050;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:782,198:0.20:980
chr2	96789787	rs893173	T	C	5883.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:64,263:0.80:327
chr2	96795608	rs1657502	T	G	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr2	96795714	rs749459	G	A	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:28,81:0.74:109
chr2	96795857	rs749458	T	C	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:43,136:0.76:179
chr2	96795944	rs749457	A	G	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.83;ReadPosRankSum=-0.605;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:31,85:0.73:116
chr2	96798510	rs1168966	G	A	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:39,123:0.76:162
chr2	96804363	.	T	TCTCCACCTGCAGCCCCGCCCCAACCAC	48.73	.	AC=1;AF=0.500;AN=2;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;QD=16.24;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:0,3:1.00:3
chr2	96874307	rs7559215	C	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:40,78:0.66:118
chr2	96943433	rs72825880	G	C	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-0.240;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:362,93:0.20:455
chr2	96944553	rs772175	G	A	8976.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:149,398:0.73:547
chr2	96956315	rs772176	T	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	96991492	rs772174	A	G	8404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=1.728;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:120,377:0.76:497
chr2	97166204	rs3731938	A	G	17149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=1181;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=0.358;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:355,814:0.70:1169
chr2	97202490	rs55768571	T	C	170.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	97315570	rs17685664	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.853;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	97319534	rs17685766	G	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.45;ReadPosRankSum=-1.655;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	97351840	rs7599598	A	G	7272.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:112,338:0.75:450
chr2	97353725	rs868168	G	A	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:53,179:0.77:232
chr2	97357756	rs368566816	CG	C	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=5.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.614;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:159,28:0.15:187
chr2	97360079	rs72809820	C	T	5073.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:104,239:0.70:343
chr2	97400324	rs6727384	A	G	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:96,199:0.67:295
chr2	97403110	rs58361269	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr2	97463095	rs1318597	T	C	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:19,68:0.78:87
chr2	97508102	.	TTTC	T	507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=3.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.632;QD=2.39;ReadPosRankSum=1.292;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:185,27:0.13:212
chr2	97587049	rs34895357	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr2	97595109	rs6725927	T	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.884;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:117,41:0.26:158
chr2	97613616	rs1624844	T	C	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.628;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:186,52:0.22:238
chr2	97613748	rs1623881	C	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-1.110;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr2	97617140	rs1257019	T	C	2200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.877;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:408,152:0.27:560
chr2	97617227	rs1257018	A	G	1265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.591;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:247,91:0.27:338
chr2	97637516	rs6714860	T	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	97637905	rs6715329	T	C	11083.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chr2	97638038	rs1730120	A	G	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	97643576	rs1796048	T	C	19047.77	.	AC=2;AF=1.00;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	1/1:1,743:1.00:744
chr2	97747180	.	C	T	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.29;MQRankSum=0.058;QD=16.20;ReadPosRankSum=3.461;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:24,69:0.74:93
chr2	97747978	rs1257094	C	T	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.67;QD=30.81;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	97751782	rs62155549	TG	CA	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=48.90;QD=45.66;SOR=1.657;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	97751786	rs62155551	G	A	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.24;QD=42.74;SOR=1.350;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	97757509	rs1257084	C	T	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	97814956	rs4386368	G	A	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	97817469	rs62153866	T	A	191.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.41;MQRankSum=-0.366;QD=27.29;ReadPosRankSum=0.366;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	97817511	rs62153867	T	C	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.902;MLEAC=1;MLEAF=0.500;MQ=41.52;MQRankSum=-1.537;QD=17.25;ReadPosRankSum=-0.690;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr2	97817545	rs80259985	A	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.287;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=20.808;MLEAC=1;MLEAF=0.500;MQ=42.07;MQRankSum=-2.287;QD=10.23;ReadPosRankSum=1.979;SOR=0.205;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	97817563	rs112026456	C	CA	691.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.796;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=33.649;MLEAC=1;MLEAF=0.500;MQ=41.83;MQRankSum=-1.494;QD=17.74;ReadPosRankSum=3.517;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	97817564	.	CT	AT	1567	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000,1.0000;HP=1;HapScore=1;MGOF=12;MMLQ=27;MQ=38.85;NF=3,21;NR=6,16;PP=160,1567;QD=21.6412458386;SC=GGGTATTATCCTATTTTAACT;SbPval=0.06;Source=Platypus;TC=48;TCF=32;TCR=16;TR=9,37;WE=97817586;WS=97817554;set=Platypus	GT:AD:AF:DP	0/1:39,9:0.19:48
chr2	97817564	.	CT	CTT	1567	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000,1.0000;HP=1;HapScore=1;MGOF=12;MMLQ=27;MQ=38.85;NF=3,21;NR=6,16;PP=160,1567;QD=21.6412458386;SC=GGGTATTATCCTATTTTAACT;SbPval=0.06;Source=Platypus;TC=48;TCF=32;TCR=16;TR=9,37;WE=97817586;WS=97817554;set=Platypus	GT:AD:AF:DP	0/1:2,37:0.95:39
chr2	97817564	rs33971912	C	T,CT	1487.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=41.83;QD=38.15;SOR=1.730;set=HC	GT:AD:AF:DP	1/2:0,19,20:0.49,0.51:39
chr2	97817578	rs113800206	T	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=13.130;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-3.550;QD=7.86;ReadPosRankSum=4.847;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr2	97817730	.	T	TTTG	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-8.410;QD=1.20;ReadPosRankSum=-1.370;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:125,17:0.12:142
chr2	97817743	rs78625891	G	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-8.318;QD=7.02;ReadPosRankSum=0.163;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:106,30:0.22:136
chr2	97817745	rs75007586	G	T	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.638;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-8.466;QD=7.11;ReadPosRankSum=0.275;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:104,32:0.24:136
chr2	97817771	rs72945177	A	C	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.398;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-7.383;QD=8.28;ReadPosRankSum=3.480;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:56,37:0.40:93
chr2	97817801	rs113485498	C	G	986.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.292;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.608;MLEAC=1;MLEAF=0.500;MQ=54.42;MQRankSum=-5.289;QD=18.62;ReadPosRankSum=4.559;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr2	97817802	.	TCACTG	T	408.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.147;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=7.054;MLEAC=1;MLEAF=0.500;MQ=54.31;MQRankSum=3.262;QD=8.70;ReadPosRankSum=-4.135;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr2	97817811	rs377439829	T	C	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.327;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.293;MLEAC=1;MLEAF=0.500;MQ=53.93;MQRankSum=-5.350;QD=20.65;ReadPosRankSum=4.120;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr2	97817817	rs77108155	T	C	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.139;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.500;MQ=53.32;MQRankSum=-4.901;QD=22.97;ReadPosRankSum=3.340;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr2	97817821	rs370583449	C	T	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.155;MLEAC=1;MLEAF=0.500;MQ=52.65;MQRankSum=-4.458;QD=24.05;ReadPosRankSum=3.552;SOR=1.326;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr2	97818146	rs145799985	G	A	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=46.87;MQRankSum=-4.679;QD=27.85;ReadPosRankSum=-0.871;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,24:0.71:34
chr2	97818161	rs74715701	C	A	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.860;MLEAC=1;MLEAF=0.500;MQ=46.72;MQRankSum=-5.367;QD=31.88;ReadPosRankSum=0.438;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr2	97818169	rs76008235	C	T	1470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=46.68;MQRankSum=-5.856;QD=27.75;ReadPosRankSum=2.237;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:18,35:0.66:53
chr2	97818188	rs141129874	T	C	1851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=46.38;MQRankSum=-6.002;QD=29.39;ReadPosRankSum=0.612;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:17,46:0.73:63
chr2	97818192	rs202154783	A	G	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=46.54;MQRankSum=-6.133;QD=28.84;ReadPosRankSum=0.882;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:18,46:0.72:64
chr2	97818197	rs200340181	G	T	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=46.78;MQRankSum=-6.256;QD=28.40;ReadPosRankSum=1.364;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr2	97818236	rs112647905	A	C	1881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.413;MLEAC=1;MLEAF=0.500;MQ=47.25;MQRankSum=-6.885;QD=25.78;ReadPosRankSum=0.758;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:24,49:0.67:73
chr2	97818260	.	GGC	G	1817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.500;MQ=48.84;MQRankSum=-7.751;QD=21.64;ReadPosRankSum=1.212;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:36,48:0.57:84
chr2	97818264	.	G	GTT	1743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=4.335;MLEAC=1;MLEAF=0.500;MQ=48.98;MQRankSum=-7.604;QD=21.80;ReadPosRankSum=1.456;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:36,44:0.55:80
chr2	97818283	rs112336445	G	C	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=50.31;MQRankSum=-7.016;QD=18.06;ReadPosRankSum=-0.126;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr2	97818326	rs72493416	G	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.985;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=-5.312;QD=3.77;ReadPosRankSum=-4.581;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr2	97818348	rs58438329	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.26;QD=25.66;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	97823971	rs13011421	T	C	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=27.33;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	97824197	rs111327757	C	CTT	100.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=53.30;MQRankSum=-3.615;QD=3.60;ReadPosRankSum=-1.185;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr2	97824198	.	A	G	109.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=53.55;MQRankSum=-3.657;QD=3.79;ReadPosRankSum=-1.567;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr2	97827737	rs76168297	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=53.30;MQRankSum=-0.789;QD=4.68;ReadPosRankSum=-3.123;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr2	97827757	rs76324746	A	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=52.52;MQRankSum=-0.741;QD=5.74;ReadPosRankSum=-3.308;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr2	97827787	rs113653147	G	A	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=52.03;MQRankSum=-0.954;QD=12.52;ReadPosRankSum=-1.870;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:38,21:0.36:59
chr2	97827800	rs111338734	A	G	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.71;MQRankSum=-1.126;QD=12.58;ReadPosRankSum=0.598;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr2	97827818	rs34725305	C	CT	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.48;MQRankSum=-5.280;QD=11.28;ReadPosRankSum=-0.010;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,36:0.68:53
chr2	97827839	rs199729690	G	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=48.89;MQRankSum=0.067;QD=8.79;ReadPosRankSum=2.852;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr2	97827912	rs201619268	G	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.31;MQRankSum=-1.367;QD=4.06;ReadPosRankSum=-1.335;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	97828929	rs79735975	A	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	97828932	.	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=51.50;MQRankSum=0.572;QD=0.94;ReadPosRankSum=-0.303;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:60,12:0.17:72
chr2	97828982	rs62153884	C	T	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.753;MLEAC=1;MLEAF=0.500;MQ=48.46;MQRankSum=-1.909;QD=14.36;ReadPosRankSum=0.363;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:25,55:0.69:80
chr2	97829003	rs145086333	CAAAAATAA	C	1781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=8.347;MLEAC=1;MLEAF=0.500;MQ=49.14;MQRankSum=-3.532;QD=19.80;ReadPosRankSum=1.524;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:42,48:0.53:90
chr2	97829029	rs146874874	G	A	1353.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=14.478;MLEAC=1;MLEAF=0.500;MQ=49.97;MQRankSum=-5.168;QD=14.25;ReadPosRankSum=3.757;SOR=1.384;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr2	97829030	rs140945055	T	G	1353.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=14.478;MLEAC=1;MLEAF=0.500;MQ=49.97;MQRankSum=-5.168;QD=14.25;ReadPosRankSum=3.648;SOR=1.384;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr2	97830053	rs112213180	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=17.049;MLEAC=1;MLEAF=0.500;MQ=51.37;MQRankSum=-3.165;QD=4.49;ReadPosRankSum=-2.009;SOR=0.071;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr2	97830104	rs62153886	G	A	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-9.089;QD=2.36;ReadPosRankSum=2.211;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:176,46:0.21:222
chr2	97833193	rs75122869	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	97833215	rs146634230	T	C	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.82;MQRankSum=-5.607;QD=31.49;ReadPosRankSum=-0.229;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr2	97833215	.	TCC	CCT	874	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=2;MGOF=24;MMLQ=26;MQ=40.76;NF=17;NR=7;PP=874;QD=38.6444947859;SC=AGAAGTACTTTCCTGTGTTAG;SbPval=0.55;Source=Platypus;TC=38;TCF=27;TCR=11;TR=24;WE=97833225;WS=97833205;set=Platypus	GT:AD:AF:DP	1/0:14,24:0.63:38
chr2	97833217	rs150423357	C	T	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=47.71;MQRankSum=-6.412;QD=25.42;ReadPosRankSum=-0.351;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:17,40:0.70:57
chr2	97833246	.	AT	A	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.94;MQRankSum=-2.221;QD=2.04;ReadPosRankSum=-0.934;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:100,16:0.14:116
chr2	97833261	.	T	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=45.87;MQRankSum=-1.182;QD=2.00;ReadPosRankSum=1.172;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:97,26:0.21:123
chr2	97833342	rs5008284	G	A	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=16.864;MLEAC=1;MLEAF=0.500;MQ=46.78;MQRankSum=-9.028;QD=4.92;ReadPosRankSum=-1.651;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:136,62:0.31:198
chr2	97833361	rs1358633	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=5.856;MLEAC=1;MLEAF=0.500;MQ=46.93;MQRankSum=-9.066;QD=1.29;ReadPosRankSum=-6.147;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:163,34:0.17:197
chr2	97833466	rs112133169	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.078;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=40.208;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-7.341;QD=0.58;ReadPosRankSum=-2.643;SOR=3.809;set=HC	GT:AD:AF:DP	0/1:162,21:0.11:183
chr2	97833553	rs76811792	C	T	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=-0.102;QD=13.83;ReadPosRankSum=-0.518;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:26,45:0.63:71
chr2	97833567	rs76160111	A	G	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=48.58;MQRankSum=0.578;QD=12.73;ReadPosRankSum=-0.340;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:27,43:0.61:70
chr2	97833569	rs78400826	C	T	1725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=48.69;MQRankSum=-0.101;QD=25.01;ReadPosRankSum=-0.007;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:25,44:0.64:69
chr2	97833583	rs72945197	C	T	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.500;MQ=49.34;MQRankSum=-0.626;QD=13.98;ReadPosRankSum=-0.269;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:22,44:0.67:66
chr2	97851069	rs62154801	A	G	2356.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.533;MLEAC=2;MLEAF=1.000;MQ=46.32;MQRankSum=1.196;QD=24.81;ReadPosRankSum=0.511;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:3,92:0.97:95
chr2	97877292	rs10171441	C	A	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	97877399	rs10186233	T	C	14616.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.82;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,566:1.00:566
chr2	97877440	rs35711845	T	C	9472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.405;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-0.617;QD=12.02;ReadPosRankSum=-0.159;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:287,501:0.64:788
chr2	97877478	rs10194525	G	A	3692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.074;QD=5.27;ReadPosRankSum=-0.174;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:474,227:0.32:701
chr2	98192743	.	A	AAC	257.77	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	98192749	rs55777246	T	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	98196849	rs34131105	G	A	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.01;QD=44.57;SOR=3.365;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	98196859	rs35904593	T	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.85;QD=39.38;SOR=2.107;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	98205924	rs74177639	C	G	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	98206188	rs1868445	C	G	10026.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr2	98273290	rs11547232	C	T	5484.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	98273661	rs2290124	A	G	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	98274527	rs1042705	G	C	16335.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr2	98276014	rs150112418	CCCTCACCTGCCCTGACCAGAA	C	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	98351654	rs34532595	TG	T	1516.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,55:0.69:80
chr2	98353847	rs11686881	C	T	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr2	98354139	rs17488834	G	T	20126.77	.	AC=1;AF=0.500;AN=2;DB;DP=1276;set=Intersection	GT:AD:AF:DP	0/1:340,924:0.73:1264
chr2	98354511	rs3192177	G	A	6487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=4.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-0.288;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:75,299:0.80:374
chr2	98355990	rs11678558	G	A	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:24,69:0.74:93
chr2	98376989	rs3214760	TA	T	597.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	98377512	rs2044458	A	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr2	98382886	rs895438	G	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:18,100:0.85:118
chr2	98392302	rs17489259	G	A	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-1.197;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:77,37:0.32:114
chr2	98409046	rs12995673	G	A	3955.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:75,178:0.70:253
chr2	98409565	rs13032265	T	C	310.94	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr2	98413781	rs2305143	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	98418812	rs11340992	CA	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.071;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	98431853	.	T	TA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=0.010;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	98449796	rs6721250	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	98460742	rs12712162	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.353;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	98525107	rs1317178	T	C	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	98544058	rs6707719	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.840;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr2	98611833	rs2279825	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	98611994	rs2279824	G	T	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	98709684	rs298917	T	C	1553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.444;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:442,128:0.22:570
chr2	98750439	.	C	G	3090.77	.	AC=1;AF=0.500;AN=2;DP=379;set=Intersection	GT:AD:AF:DP	0/1:214,160:0.43:374
chr2	98795792	rs4851884	C	G	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.408;QD=1.55;ReadPosRankSum=0.197;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:482,106:0.18:588
chr2	98795873	rs11419620	T	TG	12731.73	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr2	98797744	rs4851890	C	T	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	98804314	rs1466156	G	A	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	98811075	rs7579916	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	98833445	rs139373261	A	ACCCC	60.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.38;MQRankSum=-0.926;QD=2.64;ReadPosRankSum=2.883;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr2	98833446	rs67163987	C	CCA	663.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=1.423;QD=24.58;ReadPosRankSum=-0.399;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr2	98833449	rs62156666	G	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=42.66;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	98844575	rs7606220	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-1.330;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	98844674	rs7601049	C	G	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.054;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:179,61:0.25:240
chr2	98853173	rs11889349	G	A	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:270,129:0.32:399
chr2	98862097	rs4851121	A	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	98872662	rs113487988	C	CT	600.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.16;ReadPosRankSum=-0.576;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr2	98887116	rs4851955	G	C	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=1.294;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:22,51:0.70:73
chr2	98928494	rs7587534	G	A	10376.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr2	98928929	rs1466944	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	98948224	rs13427344	C	A	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	98949621	rs17428990	G	A	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	98950659	rs10181000	T	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	98994414	rs937725	T	C	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr2	99149946	rs2278211	G	A	4059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=1.078;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:61,186:0.75:247
chr2	99154229	rs2278208	C	T	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:19,65:0.77:84
chr2	99160508	rs3217304	GCA	G	2231.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:25,78:0.76:103
chr2	99163261	rs2278207	T	A	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=-2.792;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:10,34:0.77:44
chr2	99168953	rs1181562	T	C	249.78	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr2	99172244	rs2278206	A	G	16976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360;ClippingRankSum=0.000;DB;DP=1122;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=0.208;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:309,809:0.72:1118
chr2	99181315	rs3214545	AT	A	3911.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:42,111:0.73:153
chr2	99193496	rs2230388	C	T	7098.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:97,332:0.77:429
chr2	99219071	rs7585747	T	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-0.875;QD=14.65;ReadPosRankSum=1.795;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	99219206	rs7585939	T	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-0.701;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	99220707	rs4851144	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr2	99224998	rs17034241	C	G	3310.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:46,145:0.76:191
chr2	99226173	rs1062847	T	A	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:21,86:0.80:107
chr2	99232873	rs6711099	T	C	2297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.120;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:383,157:0.29:540
chr2	99234586	rs373790267	A	AT	1437.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.486;QD=13.69;ReadPosRankSum=-0.203;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:20,85:0.81:105
chr2	99237792	rs11892744	C	T	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	99271712	rs7557647	T	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	99272802	rs11679648	G	A	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:66,160:0.71:226
chr2	99274653	rs2271670	T	C	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-1.656;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr2	99294712	.	A	AAAAAATAT	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=61.50;MQRankSum=-1.508;QD=13.12;ReadPosRankSum=0.721;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	99443734	.	C	T	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=2.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.689;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr2	99449174	rs2280256	C	T	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	99614595	.	CA	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.730;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr2	99695097	rs62156364	A	G	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	99726043	rs6733624	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	99804642	rs10865030	T	C	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	99859863	rs17760953	G	A	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	99859954	.	C	CAGATAGAT	833.73	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr2	99918077	rs74177686	A	G	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.51;QD=26.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	99923088	rs13003899	T	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	99936265	.	TA	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.370;QD=2.93;ReadPosRankSum=-2.491;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr2	99938942	rs12464785	A	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	99939031	rs17022564	A	G	6857.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr2	99954636	rs11326784	GT	G	319.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr2	99976564	rs3828162	A	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	99992822	rs7558074	A	C	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	99995458	.	ATT	A,AT	1994.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=0.920;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.675;QD=11.73;ReadPosRankSum=2.737;SOR=0.905;set=HC	GT:AD:AF:DP	1/2:24,36,110:0.21,0.65:170
chr2	99995517	rs11896520	C	T	7743.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=23.83;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr2	99995804	rs1376443	T	C	12220.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr2	99998561	rs2290256	C	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	100006620	rs10187843	G	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	100006890	rs35228031	G	GT,GTT	1451.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.227;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=2.905;SOR=0.538;set=HC	GT:AD:AF:DP	1/2:17,49,31:0.51,0.32:97
chr2	100019496	rs2305354	A	G	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	100019612	rs3087397	TG	T	1526.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	100021184	rs2290261	A	G	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	100022270	rs1053544	G	A	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	100022772	rs717454	T	C	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	100055506	rs3087386	A	G	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	100058714	.	C	CA	88.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.07;ReadPosRankSum=0.319;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,9:0.82:11
chr2	100058870	rs3087403	C	T	7099.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr2	100068069	rs4851206	T	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	100081323	rs28369943	C	T	5947.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	100081561	rs28369942	A	AAAGTC	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	100210074	rs1047281	G	C	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:35,144:0.80:179
chr2	100210642	rs1047265	T	C	10997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.57;ReadPosRankSum=1.466;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:131,495:0.79:626
chr2	100217813	.	G	C	192.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:57,17:0.23:74
chr2	100218080	rs4851214	G	A	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.340;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:91,38:0.29:129
chr2	100288931	rs4851222	G	A	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-2.944;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:224,79:0.26:303
chr2	100343557	rs4851223	C	T	8958.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr2	100454072	rs5832886	C	CT	8143.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=39.73;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	100721050	rs13421952	A	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.273;QD=5.99;ReadPosRankSum=-1.132;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	100910578	rs4850925	C	T	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=0.105;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:28,49:0.64:77
chr2	100915629	rs4851286	T	C	8570.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr2	100915772	rs4851287	A	G	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	100916051	rs2033749	T	C	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	100916306	rs2033748	A	G	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.71;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	100916315	rs11123823	A	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.460;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:84,25:0.23:109
chr2	100917109	rs13006224	C	T	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.005;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:426,118:0.22:544
chr2	100938205	rs184118488	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	100938226	rs74177694	G	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	100938241	rs192225848	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=1.186;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	100938328	rs74177695	T	C	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	100938481	rs74177696	C	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.147;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr2	100986964	rs1437971	A	C	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	101009600	rs1530030	G	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr2	101010082	rs3748930	G	C	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=1.945;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:342,102:0.23:444
chr2	101011877	rs2241810	T	C	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.454;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:124,52:0.30:176
chr2	101014363	rs2241809	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=1.749;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:360,67:0.16:427
chr2	101022886	rs4149512	C	T	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-1.234;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:115,39:0.25:154
chr2	101031561	rs3828193	G	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:112,52:0.32:164
chr2	101126124	rs1829479	T	A	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	101179341	rs2970988	AG	GA	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr2	101186088	rs1052117	C	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:16,53:0.77:69
chr2	101188373	rs138885839	C	CCTGTGTATGAGTGA	2433.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:19,61:0.76:80
chr2	101188394	rs189087977	A	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=0.478;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr2	101520972	rs5832941	A	AT	325.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	101521173	rs57350721	ATT	A,AT	992.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;MQRankSum=0.404;QD=16.55;ReadPosRankSum=-0.567;SOR=0.500;set=HC	GT:AD:AF:DP	1/2:3,38,19:0.63,0.32:60
chr2	101541798	rs356651	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-0.169;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr2	101564628	rs10207725	A	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:22,77:0.78:99
chr2	101566070	rs3739005	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr2	101581246	rs7581886	C	T	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	101581294	.	C	CT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.403;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:163,32:0.16:195
chr2	101581976	rs4851392	A	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	101587455	rs1562313	C	T	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=2.052;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:316,81:0.20:397
chr2	101591304	rs2305160	A	G	14228.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:1,565:1.00:566
chr2	101591443	rs2305159	A	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.602;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:170,50:0.23:220
chr2	101594454	rs9679638	T	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	101598677	rs2278727	C	T	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-1.034;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:479,122:0.20:601
chr2	101609827	rs9223	C	T	13935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;ClippingRankSum=0.000;DB;DP=948;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=0.148;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:285,656:0.70:941
chr2	101619283	rs2278724	C	G	16529.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr2	101619321	rs2278723	T	C	12163.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:194,564:0.74:758
chr2	101620856	rs34386800	TA	T	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=4.041;QD=1.10;ReadPosRankSum=0.603;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:127,36:0.22:163
chr2	101622728	rs10934	C	T	1926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=-0.595;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:35,90:0.72:125
chr2	101624471	rs746924	T	C	7051.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:132,328:0.71:460
chr2	101635538	rs13007048	C	T	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:19,74:0.80:93
chr2	101638888	rs3739014	A	G	4973.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:74,227:0.75:301
chr2	101644855	rs11683877	G	A	11234.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:163,512:0.76:675
chr2	101646004	.	T	C	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.729;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:186,43:0.19:229
chr2	101646359	rs12472882	G	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr2	101652732	rs4850957	C	T	4073.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:43,179:0.81:222
chr2	101656726	rs2289953	T	C	8629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=2.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=0.226;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:143,407:0.74:550
chr2	101675808	rs7572457	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:14,57:0.80:71
chr2	101883046	rs1660694	A	G	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	101898412	rs13151	G	C	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	101967346	rs6543032	C	T	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	101971618	rs6753727	T	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.578;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:52,20:0.28:72
chr2	102000210	rs11694978	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr2	102003962	rs116287156	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	102018878	rs11123876	G	A	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:42,79:0.65:121
chr2	102018908	rs2175968	A	G	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=1.413;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:115,41:0.26:156
chr2	102026879	.	A	ACAAACT	144	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=19;MMLQ=27;MQ=60.0;NF=3;NR=3;PP=144;QD=24.5;SC=ACACACACACACTTATGTGAT;SbPval=0.49;Source=Platypus;TC=12;TCF=7;TCR=5;TR=6;WE=102026887;WS=102026869;set=Platypus	GT:AD:AF:DP	1/0:6,6:0.50:12
chr2	102027050	rs35603034	CT	C	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.732;QD=1.23;ReadPosRankSum=-1.480;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:219,69:0.24:288
chr2	102029273	rs11689348	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	102029548	rs1554070	G	A	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:28,115:0.80:143
chr2	102031176	rs4851434	A	G	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	102031489	rs4851435	C	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	102035192	rs6709913	C	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	102038849	rs4851436	T	A	14755.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,549:1.00:549
chr2	102066878	rs4851448	A	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-1.246;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr2	102066981	rs74263247	C	T	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:55,107:0.66:162
chr2	102067083	rs7585228	T	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:159,65:0.29:224
chr2	102083183	rs4851455	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	102314391	.	C	CCCG	200.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.68;ReadPosRankSum=1.465;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	102314437	rs13430711	T	C	1807.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.422;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.76;ReadPosRankSum=0.879;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,72:0.99:73
chr2	102314762	.	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,48:0.73:66
chr2	102450731	rs2301980	C	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	102472459	rs1139583	A	G	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	102501512	rs2072206	G	C	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	102503486	.	CAA	C,CA	744.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-1.409;SOR=1.061;set=HC	GT:AD:AF:DP	1/2:2,29,14:0.64,0.31:45
chr2	102625880	rs2236930	T	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr2	102632574	rs3819370	A	G	2397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.24;ReadPosRankSum=1.546;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:20,62:0.76:82
chr2	102632582	rs3819369	T	A	2286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.21;ReadPosRankSum=1.529;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:16,55:0.77:71
chr2	102636030	rs2072480	A	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	102636348	rs2072479	C	T	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:35,99:0.74:134
chr2	102641264	rs2236921	T	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	102773999	rs2287048	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=1.068;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	102774054	rs2287047	G	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	102785158	rs3213735	G	T	1210.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=2.117;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:10,60:0.86:70
chr2	102788409	rs2041747	G	A	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	102792760	rs3917318	A	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	102804538	rs144678772	A	AACC	2674.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:29,68:0.70:97
chr2	102835706	rs2241130	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr2	102842467	rs2302620	T	C	5324.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:109,251:0.70:360
chr2	102851243	rs6742931	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	102851708	rs2302612	T	C	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:17,65:0.79:82
chr2	102954653	rs13431828	C	T	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.084;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:203,99:0.33:302
chr2	102955468	rs1041973	C	A	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.638;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:279,90:0.24:369
chr2	102957348	rs10173081	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-2.028;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:123,31:0.20:154
chr2	102957716	rs1420101	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr2	102967928	rs4988955	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr2	102968007	rs4988956	G	A	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.014;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:298,104:0.26:402
chr2	102968075	rs4988957	T	C	2834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=792;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.626;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:581,204:0.26:785
chr2	102968211	rs10192036	CA	AG	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;JOINED;set=Intersection	GT:AD:AF:DP	0/1:241,106:0.31:347
chr2	102968285	rs4988958	T	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=3.228;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr2	102968356	rs10192157	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.690;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:45,6:0.12:51
chr2	102968362	rs10206753	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.683;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr2	102979028	rs2287037	C	T	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.83;ReadPosRankSum=-1.206;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:19,67:0.78:86
chr2	102979238	.	G	GT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.652;QD=1.72;ReadPosRankSum=-0.156;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr2	102984279	rs1420098	T	C	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:34,86:0.72:120
chr2	102984624	rs1362348	C	G	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	103001402	rs1035130	C	T	4126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=-1.100;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:56,195:0.78:251
chr2	103003265	rs2241116	C	A	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=-0.902;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:12,47:0.80:59
chr2	103006387	rs4851570	A	G	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:23,67:0.74:90
chr2	103006448	rs6749014	C	T	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.344;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:138,48:0.26:186
chr2	103010912	rs1420096	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.717;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr2	103039584	rs3817465	A	T	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	103039873	rs2272127	C	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr2	103040247	rs11377261	T	TG	2078.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	103040249	rs2272129	C	T	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	103040945	rs887972	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr2	103048836	rs140293617	C	A	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:77,201:0.72:278
chr2	103057892	rs11465702	A	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-2.205;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:148,39:0.21:187
chr2	103059613	rs1558651	A	G	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	103063520	rs11465723	G	A	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:117,46:0.28:163
chr2	103090127	rs17027255	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr2	103095404	rs11692304	G	A	2126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-1.060;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:491,164:0.25:655
chr2	103120232	rs2075188	G	A	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=4.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=1.792;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:187,68:0.27:255
chr2	103120311	rs2075187	G	A	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr2	103121654	rs72825956	G	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:98,44:0.31:142
chr2	103125457	rs6739301	A	G	1671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.164;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:429,130:0.23:559
chr2	103125466	rs6742381	T	C	3940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=1.162;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:417,125:0.23:542
chr2	103128866	rs4851609	T	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.204;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr2	103136309	rs1403550	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-1.071;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:201,58:0.22:259
chr2	103136446	rs1403551	T	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.302;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr2	103141447	rs2015478	A	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.304;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:125,43:0.26:168
chr2	103141651	rs1024798	G	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr2	103149100	rs1014286	G	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.998;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.521;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:71,22:0.24:93
chr2	103149162	rs2008159	A	G	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.964;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr2	103149182	rs2008157	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.086;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr2	103281540	rs35151143	G	GT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.258;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.100;QD=1.10;ReadPosRankSum=-1.186;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:100,27:0.21:127
chr2	103300506	rs6757258	A	G	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=2.442;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:33,67:0.67:100
chr2	103320930	rs182630837	C	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:7,49:0.88:56
chr2	103324575	rs17833353	T	C	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:35,61:0.64:96
chr2	103334969	rs1052431	G	A	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.033;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:377,121:0.24:498
chr2	103335441	rs33993717	A	G	2336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-1.509;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:602,184:0.23:786
chr2	103343234	rs3796061	G	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	103343275	rs34958116	G	GA	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=-0.017;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:26,30:0.54:56
chr2	103375056	rs2732838	T	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.787;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:212,34:0.14:246
chr2	103378581	rs5833037	CT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.722;QD=3.89;ReadPosRankSum=-0.288;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	103378857	rs2540298	C	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:129,44:0.25:173
chr2	103414593	rs140870577	CACTA	C	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	103431404	rs887987	T	C	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	105472055	rs186512421	T	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.121;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.335;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr2	105654716	rs3739160	C	T	1595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.527;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:276,110:0.28:386
chr2	105654830	rs3739159	G	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=7.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.647;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr2	105705376	rs140645435	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-1.289;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr2	105709023	rs6543282	T	C	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	105885961	rs2241797	T	C	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	105897261	rs2679833	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	105924510	rs2241801	A	G	7716.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr2	105953909	rs2033727	G	C	3491.31	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:19,156:0.89:175
chr2	105953938	rs3217439	G	GC	10336.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.38;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr2	105954140	rs55772482	G	A	2994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=-1.669;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:58,141:0.71:199
chr2	105959592	rs28930676	G	A	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.998;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:261,87:0.25:348
chr2	105961703	rs2679842	G	A	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	105977761	rs11124029	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:89,52:0.37:141
chr2	105977776	rs3087523	G	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:49,94:0.66:143
chr2	105979730	rs2278502	C	A	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DB;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.989;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:606,156:0.20:762
chr2	105994687	.	T	C	2790.77	.	AC=1;AF=0.500;AN=2;DP=173;set=Intersection	GT:AD:AF:DP	0/1:45,124:0.73:169
chr2	106013216	rs11891016	T	C	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	106013248	rs11884297	C	T	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	106471393	rs6543345	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	106471825	rs3832068	C	CA	451.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr2	106682226	rs4271786	T	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	106682235	rs4266035	C	G	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	106682365	rs4477942	T	G	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	106690542	rs35317173	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	106710668	rs11268588	C	CGCAGGAAGGAAGTGCCACCTT	916.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.86;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	106715342	rs3820891	G	A	6213.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr2	106717274	rs3739136	A	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	106717656	rs10177888	G	A	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	106742139	rs4851925	C	T	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	106742177	rs3739137	T	A	7656.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr2	106780015	rs3910716	C	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	106780055	rs10631203	C	CTG	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	106782398	rs4851115	C	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	106810727	rs7604916	A	G	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.63;SOR=3.093;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	106992952	rs4641931	A	G	6528.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	106992963	rs11464214	A	AG	6697.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	107007467	rs7575679	G	A	1877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.971;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=9.318;MLEAC=1;MLEAF=0.500;MQ=52.80;MQRankSum=-9.379;QD=9.39;ReadPosRankSum=-4.000;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:113,87:0.43:200
chr2	107007576	rs60043380	A	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.64;MQRankSum=3.680;QD=0.39;ReadPosRankSum=-3.977;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr2	107103773	rs371672587	GC	G	38.70	.	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr2	107103779	.	C	A	47.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.99;QD=23.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	107107511	rs11124115	C	T	11278.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr2	107107567	rs2228021	G	C	10233.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr2	107107694	rs6543414	A	G	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	107107765	rs6543415	C	A	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	107118896	rs4340514	T	C	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	107119136	rs4365459	G	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	107121040	rs146000492	T	TA	3479.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.56;MQRankSum=-1.070;QD=21.61;ReadPosRankSum=-1.663;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:4,157:0.98:161
chr2	107423188	rs1470591	G	A	5080.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:96,238:0.71:334
chr2	107423395	rs1470590	T	G	5890.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:97,269:0.73:366
chr2	107429801	rs6739022	C	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	107446396	rs877693	T	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	107446430	rs935565	T	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	107460474	rs12473361	T	G	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=-1.717;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr2	108863650	rs9646947	A	C	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.757;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:230,87:0.27:317
chr2	108863767	rs9308806	A	C	7941.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.21;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr2	108863898	rs10209928	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	108875093	rs2198463	T	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr2	108875198	rs2219078	G	A	4509.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:78,202:0.72:280
chr2	108875244	rs6722745	T	C	5815.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:85,267:0.76:352
chr2	108875464	.	AAAACTTGGTCAGGTGATGTTAT	A	2431.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.164;ClippingRankSum=0.000;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.075;QD=5.42;ReadPosRankSum=2.145;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:364,85:0.19:449
chr2	108875471	rs13385082	G	T	6827.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-1.904;QD=17.29;ReadPosRankSum=-2.312;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:85,310:0.78:395
chr2	108876948	rs4141931	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	108877062	rs4141932	T	A	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	108877316	rs4141933	T	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:5,28:0.85:33
chr2	108910751	rs17036058	G	A	4630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-2.907;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:64,210:0.77:274
chr2	108915008	rs150284441	A	AT	662.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=1.351;SOR=0.530;set=HC	GT:AD:AF:DP	1/1:5,35:0.88:40
chr2	108915136	rs7590599	T	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.442;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:175,47:0.21:222
chr2	108915263	rs4149422	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr2	108917214	rs17036079	G	A	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.204;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:115,28:0.20:143
chr2	108921795	rs11890318	A	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr2	108922036	rs17036104	T	G	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.220;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:393,112:0.22:505
chr2	108999483	.	CAA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.642;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr2	109099572	rs2718698	C	G	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	109292280	rs7584953	T	C	9970.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:2,387:0.99:389
chr2	109388846	rs700876	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr2	109389124	rs700875	A	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	109389463	rs826580	G	A	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	109393522	rs58272304	TG	T	1320.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	109393766	rs56132830	A	T	1836.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.811;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=17.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.13;ReadPosRankSum=1.959;SOR=2.542;set=HC	GT:AD:AF:DP	0/1:34,49:0.59:83
chr2	109393767	rs367802106	TATAAC	T	1827.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.280;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=21.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.14;ReadPosRankSum=2.848;SOR=2.991;set=HC	GT:AD:AF:DP	0/1:34,45:0.57:79
chr2	109393774	rs371189636	A	T	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=12.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=2.466;SOR=2.553;set=HC	GT:AD:AF:DP	0/1:24,43:0.64:67
chr2	109393779	rs375449172	A	T	1713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=8.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.56;ReadPosRankSum=1.685;SOR=2.326;set=HC	GT:AD:AF:DP	0/1:19,41:0.68:60
chr2	109393780	rs367803624	G	T	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=9.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.44;ReadPosRankSum=1.433;SOR=2.452;set=HC	GT:AD:AF:DP	0/1:18,41:0.69:59
chr2	109393781	rs371705935	A	T	1635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=9.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.72;ReadPosRankSum=1.458;SOR=2.452;set=HC	GT:AD:AF:DP	0/1:18,41:0.69:59
chr2	109393786	rs371246549	TC	T	1545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.16;ReadPosRankSum=1.136;SOR=2.160;set=HC	GT:AD:AF:DP	0/1:15,38:0.72:53
chr2	109393789	.	TCCCTTACCCCCC	T	1431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.83;ReadPosRankSum=0.655;SOR=1.852;set=HC	GT:AD:AF:DP	0/1:12,36:0.75:48
chr2	109393803	.	GT	G	1453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=2.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.46;ReadPosRankSum=0.069;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:7,34:0.83:41
chr2	109393807	rs199740075	G	GTTTAGT	1327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.94;ReadPosRankSum=-0.100;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr2	109404474	rs35693674	C	CT	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=1.591;SOR=0.179;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr2	109408208	rs6740879	G	A	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,42:0.75:56
chr2	109411248	.	GAATAT	G	56	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=56;QD=42.0;SC=TACGAAATTTGAATATAATAT;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=2;WE=109411260;WS=109411238;set=Platypus	GT:AD:AF:DP	0/1:6,2:0.25:8
chr2	109490104	rs6737810	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	109513321	rs7607563	C	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	109513654	rs12623957	G	A	13425.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr2	109513786	rs3789738	A	T	1681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.90;ReadPosRankSum=0.060;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:15,74:0.83:89
chr2	109522720	rs260639	G	A	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	109526969	rs260632	G	A	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr2	109527087	rs260631	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	109527373	rs260630	A	G	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	109539653	rs260643	A	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	109745453	rs35974095	C	T	3441.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:83,159:0.66:242
chr2	109745782	rs200435574	TGGCCGGTCCCCGCCACGCA	T	2473.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.427;QD=23.34;ReadPosRankSum=1.111;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:4,102:0.96:106
chr2	109745929	rs1367274	C	G	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.548;QD=16.38;ReadPosRankSum=-0.359;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:28,100:0.78:128
chr2	109746039	rs34609468	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr2	109758196	rs13023759	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.878;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr2	109929958	rs6748434	A	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:101,33:0.25:134
chr2	109964431	rs6725756	C	T	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	109988215	rs11680644	C	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	110303072	rs72824784	C	T	4505.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:65,204:0.76:269
chr2	110372192	rs6594048	A	G	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	110552183	.	G	C	509.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.619;QD=26.83;ReadPosRankSum=-2.058;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	110552184	rs368194978	GC	G	500.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.619;QD=26.35;ReadPosRankSum=-2.058;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	110855123	rs2004273	G	T	16680.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,639:1.00:639
chr2	110855270	rs5833366	TG	T	6332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.331;QD=20.63;ReadPosRankSum=-0.580;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:74,233:0.76:307
chr2	110873470	rs11375171	G	GA	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.138;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:80,25:0.24:105
chr2	110919041	rs3817140	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	110922064	rs71793890	C	CA	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=6.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.113;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr2	111058854	rs190352639	G	A	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.99;QD=24.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	111397237	.	CTT	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=6.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.980;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr2	111408243	.	C	T	2660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.097;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:444,180:0.29:624
chr2	111644475	rs10188079	C	T	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,69:0.68:102
chr2	111644491	rs66815319	TA	T	1645.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr2	111721142	rs138591222	ATGTGTGTG	A,ATG	7023.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;QD=31.78;SOR=1.299;set=HC	GT:AD:AF:DP	1/2:25,45,151:0.20,0.68:221
chr2	111753449	rs3761707	G	C	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.472;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:243,75:0.24:318
chr2	111886332	rs13429049	C	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	111907691	rs724710	T	C	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	111909247	rs3789068	A	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	112528507	.	G	A	207	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=26;MQ=40.65;NF=13;NR=0;PP=207;QD=18.5977855806;SC=ATTATGTTTCGTAATTTTTGA;SbPval=1.0;Source=Platypus;TC=35;TCF=31;TCR=4;TR=13;WE=112528515;WS=112528500;set=Platypus	GT:AD:AF:DP	1/0:22,13:0.37:35
chr2	112536264	rs76115652	G	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.35;QD=28.46;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	112605465	rs4848800	T	C	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	112615933	rs72936244	T	C	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=2.371;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-11.435;QD=1.49;ReadPosRankSum=2.726;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:347,76:0.18:423
chr2	112641111	.	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DP=419;ExcessHet=3.0103;FS=2.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=0.485;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:324,82:0.20:406
chr2	112641256	rs2037198	G	A	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	112687157	rs138909702	A	ATATTTATTTATT	1552.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.32;QD=43.13;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	112704862	rs7601798	A	G	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr2	112705157	rs3761701	T	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	112705185	rs3761700	G	T	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	112725684	rs113538397	A	ATGTGTG	6477.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.72;QD=41.52;SOR=1.645;set=HC	GT:AD:AF:DP	1/1:4,152:0.97:156
chr2	112740373	rs1996323	G	A	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	112740596	rs57740008	GA	G	9330.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	112740598	rs57297275	T	G	9339.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	112751928	rs7604639	G	A	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr2	112752142	rs7592909	A	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	112752880	rs6739294	G	A	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	112753020	rs77702371	A	G	15775.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr2	112753097	rs6726639	A	C	11397.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr2	112753781	rs34346510	TA	T	13332.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=34.10;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr2	112753883	rs10173553	C	T	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=27.88;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	112754828	rs3811632	G	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	112755001	rs2230515	A	G	9671.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr2	112761653	rs4848933	C	G	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	112765973	rs1131244	A	G	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	112766262	rs10210692	A	G	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	112766304	rs55766181	G	C	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	112766319	rs55799805	T	C	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	112767406	rs11884641	A	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	112767483	rs11884693	A	G	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	112767739	rs75313362	A	G	5767.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	112767824	rs77781750	A	G	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	112767941	rs77306155	A	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	112770770	rs4374383	A	G	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	112770798	rs4500955	TG	CA	6564.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	112773366	rs6710591	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	112773500	rs6710733	A	G	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	112773528	rs111619827	TCTTGTAC	T	1877.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	112776913	rs3841094	T	TC	9126.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.775;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.712;QD=24.53;ReadPosRankSum=2.983;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:24,348:0.94:372
chr2	112776979	rs3811640	C	A	10175.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.368;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=3.099;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.240;QD=24.82;ReadPosRankSum=0.395;SOR=0.162;set=HC	GT:AD:AF:DP	1/1:3,407:0.99:410
chr2	112779286	rs10667527	A	ATC	1563.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	112785770	rs6738237	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	112786523	rs147500027	A	AT	2204.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr2	112832684	rs6542026	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	112865517	rs7562848	G	C	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	112945188	rs4848281	T	A	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	112996112	rs186515035	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	113074775	rs5833444	C	CT	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.413;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,42:0.79:53
chr2	113082250	rs59100751	CT	C	3659.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	113089267	rs7601200	T	C	10112.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr2	113090047	rs4578863	T	C	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	113258671	rs62157516	G	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	113258916	rs17846193	C	T	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	113277949	rs62157538	T	C	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	113310197	.	C	CT	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.976;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chr2	113404708	rs4849091	G	A	6005.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	113479614	rs13386452	G	A	26821.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;ClippingRankSum=0.000;DB;DP=1033;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.072;QD=26.14;ReadPosRankSum=0.809;SOR=0.308;set=HC	GT:AD:AF:DP	1/1:1,1025:1.00:1026
chr2	113479745	rs34781106	AC	A	21763.73	.	AC=2;AF=1.00;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr2	113480938	.	G	GCACA,GCACACA	5531.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=182;set=Intersection	GT:AF:DP	1/2:0.34,0.63:146
chr2	113481439	rs13384583	T	A	12755.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:2,483:1.00:485
chr2	113481547	rs2063919	A	G	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	113482779	rs4849116	A	C	31637.77	.	AC=2;AF=1.00;AN=2;DB;DP=1218;set=Intersection	GT:AD:AF:DP	1/1:1,1214:1.00:1215
chr2	113484319	rs2138604	G	A	11164.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr2	113484353	rs2138605	A	G	5941.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	113484441	rs2138606	T	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	113513825	rs6731822	T	C	13419.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr2	113514883	rs11311327	AT	A	107.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	113532885	rs3783550	G	T	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	113535395	rs2071376	G	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	113535438	rs2071375	C	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	113537223	rs17561	C	A	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	113540177	rs1894399	C	T	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr2	113540205	rs1609682	G	T	4803.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	113588755	rs1143640	CAA	C	670.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	113588793	rs1143639	C	T	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	113590390	rs1143634	G	A	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	113763463	rs2305152	A	C	9098.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr2	113763575	rs895497	A	G	7312.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr2	113783570	rs13030063	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	113783909	rs6744874	A	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	113785020	rs12711747	A	G	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	113785202	rs11673918	G	A	10538.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr2	113785727	rs1562304	A	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	113786833	rs3948121	C	G	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	113789316	rs2305150	C	T	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	113830201	rs3811051	T	G	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	113890304	rs315952	T	C	20701.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:6,822:0.99:828
chr2	113940681	rs3748914	T	C	8888.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr2	113940839	rs4849167	G	C	20493.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:0,789:1.00:789
chr2	113942903	rs1975535	A	C	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	113943470	rs2241976	A	G	13904.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=-1.325;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:4,546:0.99:550
chr2	113953401	rs923693	A	G	22362.77	.	AC=2;AF=1.00;AN=2;DB;DP=869;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,867:1.00:867
chr2	113953657	rs4849169	A	C	12197.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr2	113953952	rs4848318	T	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	113953973	rs71385890	A	AT	2842.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	113953974	rs10579377	GACA	G	2842.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	113955074	rs902695	G	A	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	113956371	rs2276561	G	C	15160.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr2	113956821	rs2305133	C	G	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	113977862	rs4849175	T	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	113994417	rs1110839	G	T	5747.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	114000458	rs902691	C	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	114386338	rs149500718	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.30;MQRankSum=0.453;QD=5.27;ReadPosRankSum=-1.283;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	114387907	rs1964835	C	T	4567.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;MQ=56.69;set=Intersection	GT:AD:AF:DP	0/1:59,196:0.77:255
chr2	114387950	rs1040646	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:22,56:0.72:78
chr2	114391721	rs793079	T	C	9126.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:110,415:0.79:525
chr2	114392716	rs146907164	C	T	4797.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:90,224:0.71:314
chr2	114425263	rs187515355	T	C	1189.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.13;MQRankSum=0.000;QD=29.74;ReadPosRankSum=-0.881;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr2	114425425	rs145764632	C	A	1819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=47.70;MQRankSum=-4.747;QD=3.86;ReadPosRankSum=-0.339;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:343,129:0.27:472
chr2	114426115	rs80314553	T	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-10.226;QD=1.11;ReadPosRankSum=-2.039;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:434,82:0.16:516
chr2	114429542	rs13003858	G	A	6538.73	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:120,311:0.72:431
chr2	114429576	rs12986781	T	C	6735.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:108,318:0.75:426
chr2	114480812	rs3835109	A	AAAC	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=1.453;QD=16.70;ReadPosRankSum=-1.058;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	114492135	rs2305254	C	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=2.276;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:94,29:0.24:123
chr2	114493524	rs10199704	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.123;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:83,21:0.20:104
chr2	114500473	rs3748905	T	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:134,59:0.31:193
chr2	114513386	rs7578249	C	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.429;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:164,42:0.20:206
chr2	114513787	rs4538208	C	G	4790.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	114647649	rs147326241	A	ACTGC	243.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,9:0.22:41
chr2	114670966	rs35359787	CTATT	C	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	114691809	rs5833524	G	GT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=1.358;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:60,20:0.25:80
chr2	114697516	rs35820702	A	G	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:28,54:0.66:82
chr2	114713169	rs62169932	A	G	3821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-1.919;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:302,112:0.27:414
chr2	114713188	rs62169933	G	A	4331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.282;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:386,149:0.28:535
chr2	115822286	rs1509742	T	G	2174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.73;ReadPosRankSum=-0.684;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:28,102:0.78:130
chr2	115919677	rs7557011	CT	GC	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	116066984	rs975453	G	A	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	116099725	rs843403	A	T	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	116283668	rs984066	G	A	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	116497479	rs1550854	A	G	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	116497528	rs1550853	A	G	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	116510817	rs2053724	G	C	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	116525960	rs1446495	G	A	6596.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	116539846	rs36082071	GA	G	684.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr2	116548820	rs3738879	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=1.406;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr2	116593675	rs10549769	ATG	A	720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-0.500;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:63,32:0.34:95
chr2	116593695	rs34212292	GAT	G	1663.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:16,94:0.85:110
chr2	116598546	rs272011	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	116599659	rs272010	A	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=6.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-0.455;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	116599927	rs272009	T	C	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	118572471	rs3755492	A	C	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.526;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=2.599;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:177,45:0.20:222
chr2	118583940	rs2303348	C	T	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.374;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:129,59:0.31:188
chr2	118677916	rs35891278	T	C	4985.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:73,231:0.76:304
chr2	118688754	rs971754	T	C	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr2	118692929	rs12151445	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,45:0.82:55
chr2	118694393	rs2303333	C	G	4628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=0.793;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:61,217:0.78:278
chr2	118704478	rs7580124	T	G	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	118704503	rs2303329	A	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.228;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:77,27:0.26:104
chr2	118705570	rs10186396	A	G	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	118706879	rs1035598	A	G	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	118716166	rs1991102	C	T	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr2	118731573	rs748767	G	A	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.915;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:306,84:0.22:390
chr2	118732975	rs6722547	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	118735395	rs889899	G	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	118743630	rs33975708	G	A	4161.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:106,202:0.66:308
chr2	118753148	rs10633675	A	ATC	2987.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	118764242	rs34609704	C	CA	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.523;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr2	118766024	rs10864966	A	G	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	118771566	rs11545372	C	A	5429.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:111,255:0.70:366
chr2	118771663	rs12477588	A	G	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr2	118771682	.	TGCCGCC	T	4018.73	.	AC=1;AF=0.500;AN=2;DP=258;set=Intersection	GT:AD:AF:DP	0/1:68,103:0.60:171
chr2	118854094	.	AT	A	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.707;QD=1.14;ReadPosRankSum=1.834;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:155,46:0.23:201
chr2	118866033	rs11407321	G	GA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.398;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr2	119600491	rs368544860	G	A	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.774;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:102,36:0.26:138
chr2	119604255	rs79126103	C	T	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	119700096	rs2077344	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr2	119734894	rs66466905	AAG	A	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.048;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:86,16:0.16:102
chr2	119739127	rs10623500	C	CATTT	1745.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=0.939;QD=17.28;ReadPosRankSum=-1.269;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:37,64:0.63:101
chr2	119739269	rs56216274	C	T	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.964;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:131,45:0.26:176
chr2	119739715	rs76664794	CACT	C	61.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr2	119748135	rs3835093	TC	T	1283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=71.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-0.222;SOR=0.002;set=HC	GT:AD:AF:DP	0/1:118,71:0.38:189
chr2	119749477	rs2304708	T	G	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	119749611	rs4848530	C	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-0.389;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr2	119749858	rs3765035	A	G	249.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	119915132	rs11308896	CG	C	1445.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	119915249	rs7556873	T	C	8963.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr2	119988565	rs838100	G	A	1783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.019;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:457,143:0.24:600
chr2	120003642	rs838083	C	T	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	120005840	rs67985074	TC	T	1799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.148;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:341,110:0.24:451
chr2	120012171	rs12711924	G	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=-0.770;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr2	120014985	rs838072	A	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	120059895	rs16744	G	GGAAA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.640;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,2:0.14:14
chr2	120059988	rs1890	T	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.995;QD=5.53;ReadPosRankSum=-1.174;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:56,29:0.34:85
chr2	120060082	rs1052500	T	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=1.189;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:74,32:0.30:106
chr2	120078778	rs1132267	T	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-0.388;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr2	120125029	rs2084202	A	G	5011.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:85,220:0.72:305
chr2	120125936	rs2244135	T	C	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr2	120187344	rs11123523	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	120189300	rs2043867	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	120189404	rs4340531	A	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	120189433	rs4599130	G	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	120194651	rs3217464	A	AGTGTGC	31211.73	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr2	120197670	rs1042656	G	A	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	120199140	rs1126839	A	G	22182.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.473;ClippingRankSum=0.000;DB;DP=904;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.98;ReadPosRankSum=1.696;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:1,887:1.00:888
chr2	120209689	rs2587692	A	G	9242.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:1,362:1.00:363
chr2	120221585	rs2253870	G	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	120221984	rs2579647	A	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	120230998	rs2579641	G	A	2057.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.920;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.445;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.50;ReadPosRankSum=-0.957;SOR=0.576;set=HC	GT:AD:AF:DP	1/1:1,83:0.99:84
chr2	120231110	rs41279774	T	C	1725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=1.696;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:55,86:0.61:141
chr2	120231165	rs2587701	T	C	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	120231303	rs2587702	T	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	120317621	.	CT	C	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=5.427;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.523;QD=3.10;ReadPosRankSum=-2.150;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:72,64:0.47:136
chr2	120362407	rs1568540	C	T	9705.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr2	120362897	rs1521914	T	A	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	120366057	rs11398750	G	GT	857.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.88;ReadPosRankSum=1.818;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:7,47:0.87:54
chr2	120369300	rs10864986	T	C	6014.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr2	120385094	rs71966516	GATATAT	G	674.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.13;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr2	120387637	rs12711931	G	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	120388412	rs2272058	G	A	10232.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr2	120404629	.	ATT	A,AT	4254.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=363;set=Intersection	GT:AF:DP	1/2:0.22,0.70:302
chr2	120409430	rs1521912	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	120414083	rs6761357	C	T	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	120438523	rs13011768	A	G	16486.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr2	120438696	rs939777	A	G	24493.77	.	AC=2;AF=1.00;AN=2;DB;DP=927;set=Intersection	GT:AD:AF:DP	1/1:0,916:1.00:916
chr2	120439230	rs1983406	C	G	13480.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr2	120443443	rs939778	A	G	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	120620092	.	A	AT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.960;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:229,59:0.20:288
chr2	120658328	rs61748154	T	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.037;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:57,12:0.17:69
chr2	120689905	rs2292361	A	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	120703842	rs2289581	A	G	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	120704164	rs3214717	A	AT	3493.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	120704166	rs2289580	G	T	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	120718322	rs12618050	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	120725704	rs10194955	A	G	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	120776972	rs3216703	TG	T	890.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	120830815	rs3738970	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	120885310	rs1034489	G	A	11297.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr2	120889173	rs3738968	G	C	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:11,206:0.95:217
chr2	120918585	rs12617570	A	C	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	120980428	rs11550347	G	C	15280.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr2	120997869	rs6746072	A	T	2010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=0.005;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:31,106:0.77:137
chr2	121036385	rs12711939	TT	GA	6161.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	121038290	rs113531689	GA	G	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=1.106;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	121043403	rs4091515	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	121223274	rs17050160	C	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.584;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:182,40:0.18:222
chr2	121708663	rs10864866	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	121713022	rs6718382	C	G	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.29;SOR=2.264;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	121713030	rs12614482	G	A	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.86;SOR=3.134;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	121713041	rs12617878	T	C	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	121726447	rs2592595	G	A	27775.77	.	AC=2;AF=1.00;AN=2;DB;DP=1037;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,1032:1.00:1032
chr2	121729323	rs2677507	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	121729360	rs2592592	T	C	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	121729490	rs2592591	C	T	14124.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr2	121729686	rs2592590	T	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	121730138	rs3106962	C	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	121740190	rs1968619	C	T	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=2.920;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	121740194	rs1530580	T	G	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=2.706;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	121740505	rs280196	C	T	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	121744225	rs2276553	A	G	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:152,70:0.32:222
chr2	121746956	rs3738880	G	T	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.144;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:486,136:0.22:622
chr2	121747406	rs12711538	G	A	2824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.978;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:514,186:0.27:700
chr2	121747429	rs10167980	A	G	6096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.077;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=1.437;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:520,181:0.26:701
chr2	121747433	rs114376238	C	T	6090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.535;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:524,189:0.27:713
chr2	121982011	rs4384798	T	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	121989489	rs2304667	G	A	6975.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	121989683	.	TTTTTGTTTTG	T	2461	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=4;HapScore=1;MGOF=1;MMLQ=19;MQ=56.51;NF=0;NR=10;PP=2461;QD=247.0;SC=ACTGCCACTCTTTTTGTTTTG;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=10;WE=121989700;WS=121989673;set=Platypus	GT:AD:AF:DP	1/1:3,10:0.77:13
chr2	122007378	rs2119021	A	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	122042750	rs13415738	A	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:85,18:0.17:103
chr2	124783224	.	G	A	592.77	.	AC=1;AF=0.500;AN=2;DP=267;set=Intersection	GT:AD:AF:DP	0/1:209,53:0.20:262
chr2	125192068	rs1425745	T	C	2165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=1.278;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:39,103:0.73:142
chr2	125232609	rs4411700	G	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:12,57:0.83:69
chr2	127657221	rs3795873	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:77,29:0.27:106
chr2	127808226	rs2071270	A	T	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:50,156:0.76:206
chr2	127808532	rs2043798	G	A	3504.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:60,162:0.73:222
chr2	127808909	rs6745677	G	A	6201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=0.170;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:97,283:0.74:380
chr2	127811679	rs142568045	G	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.897;QD=2.18;ReadPosRankSum=-0.965;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:96,26:0.21:122
chr2	127811712	rs35339559	G	GCA	2570.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:14,64:0.82:78
chr2	127816632	rs2276579	G	A	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:32,163:0.84:195
chr2	127816846	rs140171337	CTG	C	411.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr2	127821085	rs2071268	C	T	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:41,128:0.76:169
chr2	127821452	rs2071267	C	T	6560.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:93,282:0.75:375
chr2	127821499	rs72481904	T	C	11347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=-1.457;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:186,517:0.74:703
chr2	127826533	rs1060743	A	G	9748.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:207,463:0.69:670
chr2	127826635	rs192877291	C	T	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:52,147:0.74:199
chr2	127827407	rs137898556	G	A	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr2	127839474	rs11682128	G	A	11228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=-0.039;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:183,519:0.74:702
chr2	127839534	rs11690153	T	C	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:40,106:0.73:146
chr2	127864546	rs11554586	G	A	14102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.517;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=-2.029;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:200,645:0.76:845
chr2	127944781	rs11384285	A	AC	406.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	127953054	rs7568070	A	C	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	128015367	rs4662718	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.621;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr2	128028792	rs4150499	T	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.863;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr2	128029065	rs11345447	GA	G	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.559;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr2	128050134	rs4150402	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.881;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr2	128079806	rs3732209	A	G	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:37,68:0.65:105
chr2	128087651	rs61422716	C	T	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:31,89:0.74:120
chr2	128175875	rs1799809	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:121,47:0.28:168
chr2	128176040	rs1799810	A	T	8789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.50;ReadPosRankSum=2.875;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:156,411:0.72:567
chr2	128176195	rs2854700	G	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	128177377	rs1158867	C	T	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.361;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:73,27:0.27:100
chr2	128180872	rs5936	G	T	3327.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:65,153:0.70:218
chr2	128181028	rs1878844	A	G	8497.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr2	128181234	rs2069922	GC	G	662.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr2	128183914	rs2069928	G	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.838;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.798;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr2	128184770	rs5937	T	C	3325.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:60,157:0.72:217
chr2	128249441	rs334152	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.89;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	128261245	rs138089460	AAAAT	A	359.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	128271958	rs10432384	C	T	4420.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:68,204:0.75:272
chr2	128281469	rs2303947	C	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr2	128321770	rs2404991	G	A	5560.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:121,254:0.68:375
chr2	128338519	rs35136538	T	G	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:29,78:0.73:107
chr2	128339456	rs4662740	G	T	6155.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:78,278:0.78:356
chr2	128342547	rs4662741	G	A	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	128345960	rs10928773	T	C	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:34,111:0.77:145
chr2	128346228	rs11673952	A	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	128350551	rs11678239	G	A	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.119;QD=3.95;ReadPosRankSum=-0.321;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:257,89:0.26:346
chr2	128350578	rs58867441	T	TG	7316.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr2	128351346	rs7558838	T	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.746;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr2	128354024	rs17340406	T	C	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.812;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:469,150:0.24:619
chr2	128363530	rs11382004	G	GC	2699.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	128367092	rs777432	G	A	2476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DB;DP=923;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=1.951;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:706,210:0.23:916
chr2	128369752	rs12053039	A	G	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.654;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:72,34:0.32:106
chr2	128369896	rs777435	A	G	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.447;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:343,73:0.18:416
chr2	128369917	rs12052654	C	T	1720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.261;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:351,74:0.17:425
chr2	128370200	rs705092	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.292;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-2.224;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr2	128377833	rs2248519	C	G	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:131,48:0.27:179
chr2	128378089	.	GG	CT	1237.77	.	AC=1;AF=0.500;AN=2;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr2	128382859	rs2245297	C	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	128385224	rs10164978	C	G	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.842;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:340,100:0.23:440
chr2	128386120	rs144295028	TGGGTG	T	1729.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=7.351;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.326;QD=15.31;ReadPosRankSum=1.103;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:64,49:0.43:113
chr2	128388790	rs13025791	G	A	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.455;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:353,90:0.20:443
chr2	128388862	rs13025959	G	C	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.478;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:323,109:0.25:432
chr2	128389343	rs10208043	C	T	1380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.705;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:317,103:0.25:420
chr2	128389422	rs10183797	G	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.081;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:70,13:0.16:83
chr2	128393261	rs2255178	T	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.739;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr2	128393289	rs2255177	T	C	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-2.527;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:187,62:0.25:249
chr2	128393800	rs2255161	T	C	3872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.590;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:718,267:0.27:985
chr2	128394758	rs2255039	T	C	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.639;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:260,93:0.26:353
chr2	128394875	rs59579995	C	CA	7085.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=1149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.952;QD=6.28;ReadPosRankSum=3.036;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:894,234:0.21:1128
chr2	128394877	rs56272236	C	T	7094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DB;DP=1145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.956;QD=6.22;ReadPosRankSum=2.941;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:905,236:0.21:1141
chr2	128394955	rs11686946	A	G	2313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-3.233;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:653,185:0.22:838
chr2	128396807	rs891515	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr2	128400608	rs4662751	C	T	5019.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:57,225:0.80:282
chr2	128401091	rs2244507	A	G	1460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.279;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:289,103:0.26:392
chr2	128407499	rs2243805	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.978;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:83,24:0.22:107
chr2	128409337	rs35201354	GC	CA	2263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.500;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:215,70:0.25:285
chr2	128411934	rs6707277	A	G	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	128411950	rs6707282	A	G	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	128421829	rs79110686	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr2	128526579	rs143186338	T	TTAAA	706.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr2	128528508	rs55916728	C	T	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:57,118:0.67:175
chr2	128608290	rs6713679	T	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.321;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:33,7:0.17:40
chr2	128610719	rs35614229	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-1.137;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr2	128699833	rs1370229	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	128708063	rs2461463	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	128744580	rs2948068	A	G	1890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.131;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=4.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-0.154;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:51,111:0.69:162
chr2	128753854	rs1550174	T	C	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	128757804	rs10928793	C	T	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:33,108:0.77:141
chr2	128757995	rs17015864	A	C	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.533;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:177,57:0.24:234
chr2	128772310	rs35312230	C	T	1373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.384;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:85,40:0.32:125
chr2	128772310	.	CGT	TGC	789	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=26;MQ=60.0;NF=17;NR=8;PP=789;QD=33.6987149945;SC=TTCTGTGTTACGTATTTTACC;SbPval=0.62;Source=Platypus;TC=74;TCF=49;TCR=25;TR=25;WE=128772320;WS=128772300;set=Platypus	GT:AD:AF:DP	0/1:49,25:0.34:74
chr2	128772312	.	T	C	1373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.968;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:86,39:0.31:125
chr2	128849114	rs4476299	T	C	6906.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr2	128860835	rs7355336	A	G	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	128870808	rs4662775	T	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	128872595	rs56397917	C	T	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	128874061	rs10210598	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	128877837	rs4662593	G	C	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	128878014	rs4662594	G	A	11461.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr2	128878667	rs6430990	T	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	128878979	rs10636999	C	CT	603.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.560;QD=14.73;ReadPosRankSum=-0.511;SOR=0.648;set=HC	GT:AD:AF:DP	1/1:5,36:0.88:41
chr2	128879022	rs6430991	G	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	128880899	rs4480941	T	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	128880993	rs4633871	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	128913757	rs3738923	G	A	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	128934400	rs2290111	T	C	9225.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr2	128936000	rs2290110	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	128936171	rs3217587	TATG	T	974.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=42.38;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	128939695	rs17793615	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	128939817	rs1699	G	A	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr2	128941511	.	T	TGTGTGTGTGTGTGA	168.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	128944424	rs744265	T	C	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	128947505	rs11542865	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	129075877	rs200979099	G	T	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.422;MLEAC=1;MLEAF=0.500;MQ=46.89;MQRankSum=-1.158;QD=3.14;ReadPosRankSum=2.288;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr2	129075961	rs61732881	T	C	2434.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.446;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=49.59;MQRankSum=0.657;QD=24.59;ReadPosRankSum=-0.769;SOR=0.626;set=HC	GT:AD:AF:DP	1/1:1,98:0.99:99
chr2	130738163	rs144773989	G	A	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=53.88;MQRankSum=1.039;QD=3.52;ReadPosRankSum=-1.647;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:284,97:0.25:381
chr2	130750107	.	C	CCGGCGG	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.99;MQRankSum=1.465;QD=35.25;ReadPosRankSum=-0.366;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	130750446	rs199529770	C	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=47.75;MQRankSum=-5.273;QD=5.75;ReadPosRankSum=1.089;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:69,39:0.36:108
chr2	130897218	rs13006246	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.625;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.650;QD=1.30;ReadPosRankSum=0.240;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:124,25:0.17:149
chr2	130941065	rs6737226	T	C	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr2	130949411	rs10208844	G	T	7814.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr2	130951548	rs1052319	G	A	11290.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:126,507:0.80:633
chr2	130951566	rs7340193	G	A	12196.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:150,553:0.79:703
chr2	130988166	rs201275727	A	G	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:399,188:0.32:587
chr2	130988203	rs79048658	C	T	4124.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:305,228:0.43:533
chr2	130988216	rs76582648	C	G	4514.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:265,238:0.47:503
chr2	130988217	rs28714473	G	A	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:319,178:0.36:497
chr2	130988276	rs3894178	C	T	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:255,140:0.35:395
chr2	130988410	rs202147725	G	A	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=47.00;MQRankSum=-6.654;QD=5.99;ReadPosRankSum=1.322;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:155,82:0.35:237
chr2	130988421	rs200539608	C	T	1528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=47.35;MQRankSum=-7.069;QD=5.29;ReadPosRankSum=3.662;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:195,94:0.33:289
chr2	131103118	.	G	C	2716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=0.994;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:412,168:0.29:580
chr2	131103635	rs11542415	C	T	2414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=955;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.229;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:739,204:0.22:943
chr2	131487673	rs272128	A	C	19988.77	.	AC=2;AF=1.00;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	1/1:1,763:1.00:764
chr2	131520178	rs77687733	C	G	11518.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr2	131520663	rs1905235	T	C	20865.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:0,779:1.00:779
chr2	131672950	rs12464119	A	G	11154.77	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:165,505:0.75:670
chr2	131673316	rs3739129	C	T	8510.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:124,386:0.76:510
chr2	131673702	rs62178867	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.524;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:109,36:0.25:145
chr2	131674285	rs3739127	A	G	6163.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:88,284:0.76:372
chr2	131688587	rs6718816	G	A	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.078;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:171,48:0.22:219
chr2	131688783	rs61750360	G	A	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-3.058;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:257,114:0.31:371
chr2	131769237	rs13023338	G	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	131798737	rs2241460	C	G	9491.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:186,431:0.70:617
chr2	131799563	rs2241461	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr2	131800943	rs2288189	G	C	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:21,64:0.75:85
chr2	131802045	rs10928515	C	T	4787.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:85,219:0.72:304
chr2	131805984	rs11541220	G	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr2	131812738	rs3814391	C	T	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:46,117:0.72:163
chr2	131829560	rs34094232	A	ACACC	2517.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,63:0.75:84
chr2	131883287	.	TA	T	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=1.947;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr2	131888361	.	A	AT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=-0.266;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:113,25:0.18:138
chr2	131888424	rs3762570	C	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr2	132111121	rs11895354	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.14;QD=47.81;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	132111123	rs370814343	T	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.08;QD=46.02;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	132111127	rs13410274	G	T	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.99;QD=45.27;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	132111166	.	G	GCC	1357.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.56;MQRankSum=1.034;QD=26.62;ReadPosRankSum=-1.578;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:2,49:0.96:51
chr2	132111167	.	G	C	928	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=1;HapScore=1;MGOF=31;MMLQ=23;MQ=40.14;NF=22;NR=26;PP=928;QD=20.0577335947;SC=GCCGCCGCCGGCGCTGGCCTC;SbPval=0.56;Source=Platypus;TC=48;TCF=22;TCR=26;TR=48;WE=132111175;WS=132111143;set=Platypus	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	132111167	.	G	GCCGCCGCCGC	2661.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.08;QD=40.95;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	132120501	rs146351322	C	CT	5040.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;MQRankSum=-0.440;QD=24.47;ReadPosRankSum=1.806;SOR=1.399;set=HC	GT:AD:AF:DP	1/1:2,204:0.99:206
chr2	132121350	rs371054387	G	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.33;QD=24.89;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	132200114	rs76882281	T	C	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	132200136	rs73960420	C	A	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	132200256	rs71345553	T	C	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	132200307	rs71345554	G	A	8518.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr2	132200345	rs71428578	C	T	13446.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr2	132200529	rs71345555	A	G	6424.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	132200935	rs71345556	C	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.77;QD=32.20;SOR=6.804;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	132200984	rs113036104	G	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.38;QD=28.71;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	132200995	rs113518588	C	T	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.80;QD=28.06;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	132201189	rs79072949	G	C	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.71;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	132201202	rs77064210	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.90;QD=24.04;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	132201288	rs4337511	A	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.13;QD=25.29;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	132201468	rs4522649	G	A	11309.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr2	132201582	rs1806886	A	G	17387.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:1,663:1.00:664
chr2	132201663	rs1317139	T	C	14857.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr2	132201718	rs2001215	T	C	24685.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr2	132201736	rs2076798	C	G	24735.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr2	132201862	rs1806887	C	G	10870.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr2	132201889	rs2007096	C	A	8896.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr2	132201930	rs13411254	T	C	6580.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr2	132202050	rs13413908	T	C	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	132229561	rs137878337	T	G	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-9.138;QD=3.37;ReadPosRankSum=-0.114;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:211,66:0.24:277
chr2	132229583	rs16848770	T	C	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:275,92:0.25:367
chr2	132229720	rs3101998	T	C,G	4355.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=45.72;QD=23.29;SOR=1.648;set=HC	GT:AD:AF:DP	1/2:0,84,103:0.45,0.55:187
chr2	132233606	rs7571932	C	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	132233654	rs7571947	C	T	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.973;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=0.745;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:44,29:0.40:73
chr2	132233676	rs7561542	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:84,38:0.31:122
chr2	132233740	rs2622026	C	A	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=2.903;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-5.475;QD=3.57;ReadPosRankSum=1.299;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:169,48:0.22:217
chr2	132233755	rs7561673	G	A	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.783;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-3.864;QD=3.35;ReadPosRankSum=0.104;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:183,51:0.22:234
chr2	132233785	rs7561684	G	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=-4.404;QD=2.58;ReadPosRankSum=0.654;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:174,46:0.21:220
chr2	132235619	rs141836251	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr2	132237150	rs28462272	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-1.210;QD=0.78;ReadPosRankSum=0.719;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr2	132237983	rs71347110	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	132238286	rs111626841	C	T	1604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-14.977;QD=2.40;ReadPosRankSum=1.438;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:528,141:0.21:669
chr2	132238350	rs111758039	C	CAGCA	3877.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-8.710;QD=9.08;ReadPosRankSum=1.358;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:310,117:0.27:427
chr2	132240047	rs145801195	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr2	132241704	rs11553182	C	T	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.951;QD=2.83;ReadPosRankSum=-0.669;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:253,71:0.22:324
chr2	132241731	rs75021268	T	C	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.385;QD=2.95;ReadPosRankSum=-1.402;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:316,98:0.24:414
chr2	132248330	rs111311763	G	GGC	1729.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-2.618;QD=5.56;ReadPosRankSum=-0.154;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:253,58:0.19:311
chr2	132248336	rs59539470	C	G	1698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-3.081;QD=5.33;ReadPosRankSum=-0.637;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:257,62:0.19:319
chr2	132248379	rs12469517	T	G	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr2	132248584	rs10182785	T	C	8326.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	132248632	rs10179938	A	C	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-3.201;QD=3.79;ReadPosRankSum=1.877;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:294,105:0.26:399
chr2	132248876	rs6709245	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	132249372	rs6706952	C	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.57;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	132249600	rs2272357	G	A	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=53.25;MQRankSum=-1.393;QD=25.37;ReadPosRankSum=-0.983;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:16,29:0.64:45
chr2	132249605	rs2272358	G	A	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=53.56;MQRankSum=-1.735;QD=24.17;ReadPosRankSum=0.736;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr2	132249916	rs72262008	AC	A	229.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr2	132254681	rs6711982	A	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr2	132257830	rs13035779	C	T	5095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-4.692;QD=15.54;ReadPosRankSum=1.486;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:87,241:0.73:328
chr2	132258031	rs3108473	A	G	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:49,161:0.77:210
chr2	132258153	.	C	CACCTGCTACCTACCTGCTACCTGCTACCTG	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=21.516;MLEAC=1;MLEAF=0.500;MQ=52.25;MQRankSum=3.060;QD=0.40;ReadPosRankSum=-2.586;SOR=3.523;set=HC	GT:AD:AF:DP	0/1:158,13:0.08:171
chr2	132258484	rs139623617	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr2	132258593	rs13415770	A	G	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:48,179:0.79:227
chr2	132258815	rs12691986	G	A	3635.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:54,164:0.75:218
chr2	132266015	rs12477848	T	A	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:43,106:0.71:149
chr2	132266057	rs151192972	A	G	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=0.614;QD=3.02;ReadPosRankSum=2.899;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:168,52:0.24:220
chr2	132266142	rs12691988	G	C	9202.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.32;QD=25.85;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr2	132266246	rs7591223	T	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=1.051;QD=1.66;ReadPosRankSum=-0.300;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:110,25:0.19:135
chr2	132266281	rs35012291	TG	T	1394.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:10,46:0.82:56
chr2	132272158	rs13031436	T	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-0.827;QD=31.12;ReadPosRankSum=1.109;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	132272160	rs12995918	G	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-0.641;QD=33.34;ReadPosRankSum=1.283;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr2	132272235	rs36013871	GA	G	751.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr2	132272326	rs12477742	A	G	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:69,119:0.63:188
chr2	132273092	rs2950565	T	G	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.599;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-1.448;QD=14.96;ReadPosRankSum=-0.979;SOR=1.674;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr2	132273426	rs71934146	GGAGTC	G	101.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	132273796	.	G	GCA	730	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=4;MGOF=9;MMLQ=27;MQ=59.97;NF=5;NR=4;PP=730;QD=88.8788898265;SC=CCACGGTGGAGCCAACCCTCA;SbPval=0.12;Source=Platypus;TC=23;TCF=7;TCR=16;TR=9;WE=132273810;WS=132273786;set=Platypus	GT:AD:AF:DP	1/0:14,9:0.39:23
chr2	132273797	.	C	CA	1407.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.767;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=8.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.11;ReadPosRankSum=-1.875;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:36,34:0.49:70
chr2	132273798	.	C	CT	1407.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.186;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=8.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.55;ReadPosRankSum=-2.152;SOR=1.772;set=HC	GT:AD:AF:DP	0/1:36,36:0.50:72
chr2	132273801	.	C	T	1542.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.407;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=8.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.85;ReadPosRankSum=-2.592;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr2	132273802	rs201262646	C	CATTAG	1533.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr2	132274025	.	T	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.76;MQRankSum=0.295;QD=3.28;ReadPosRankSum=-0.032;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr2	132274077	rs4309618	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.72;MQRankSum=-1.093;QD=22.62;ReadPosRankSum=0.481;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr2	132274113	rs4493309	A	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.22;MQRankSum=-0.000;QD=19.52;ReadPosRankSum=-0.660;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr2	132274370	rs113719235	C	T	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.236;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:59,23:0.28:82
chr2	132274474	rs13010688	G	A	1398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.563;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:55,71:0.56:126
chr2	132275343	rs12691998	G	T	27720.77	.	AC=2;AF=1.00;AN=2;DB;DP=1072;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=25.93;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,1069:1.00:1069
chr2	132275396	rs2277878	T	C	29552.77	.	AC=2;AF=1.00;AN=2;DB;DP=1149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=25.79;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,1146:1.00:1146
chr2	132275838	rs12692001	C	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.27;MQRankSum=-0.120;QD=9.62;ReadPosRankSum=0.366;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	132276039	rs28681469	C	T	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:49,98:0.67:147
chr2	132276254	rs28621583	A	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr2	132276650	rs28712373	G	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr2	132277686	rs9287520	C	T	4015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-1.377;QD=16.59;ReadPosRankSum=1.220;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:57,185:0.76:242
chr2	132277962	rs7560296	T	C	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr2	132277984	rs10209980	G	A	4118.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:57,191:0.77:248
chr2	132286046	rs3101992	A	G	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	132286061	rs60469601	A	G	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	132286155	rs10174409	G	C	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr2	132287824	rs10187823	C	T	8231.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.63;QD=25.41;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr2	132288102	rs116538008	T	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.68;QD=31.49;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	132288315	rs11547023	G	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=48.32;MQRankSum=-3.912;QD=1.74;ReadPosRankSum=-0.690;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:82,20:0.20:102
chr2	132288362	rs201632382	T	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.50;QD=26.13;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	132290399	rs57007130	G	A	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	132290464	rs13660	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=0.096;QD=3.63;ReadPosRankSum=-1.534;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:133,47:0.26:180
chr2	132491544	rs7599401	C	G	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.92;QD=25.29;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	132494272	rs4850248	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	132558335	rs12992187	G	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	133014497	.	G	C	4217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=2.941;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-4.471;QD=17.29;ReadPosRankSum=0.709;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:134,110:0.45:244
chr2	133014504	rs79813268	G	T	4486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=3.336;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-4.837;QD=14.81;ReadPosRankSum=2.088;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:175,128:0.42:303
chr2	133014510	rs9287404	T	C	5641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=4.320;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-7.010;QD=15.98;ReadPosRankSum=1.788;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:195,158:0.45:353
chr2	133014602	rs75245503	G	C	43477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=2073;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-17.376;QD=20.99;ReadPosRankSum=2.051;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:964,1107:0.53:2071
chr2	133014612	rs74853538	A	C	45822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=2218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-17.055;QD=20.68;ReadPosRankSum=2.559;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:1023,1193:0.54:2216
chr2	133014619	rs78327226	C	T	5709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=2281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-27.422;QD=2.50;ReadPosRankSum=-1.494;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:1997,283:0.12:2280
chr2	133014640	rs78867621	C	T	8176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=2353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-26.691;QD=3.48;ReadPosRankSum=-0.270;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:2010,342:0.15:2352
chr2	133014651	rs111708138	A	AC	44246.73	.	AC=1;AF=0.500;AN=2;DB;DP=2336;set=Intersection	GT:AD:AF:DP	0/1:954,1335:0.58:2289
chr2	133014657	rs113237573	G	A	8416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=2354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-23.767;QD=3.58;ReadPosRankSum=1.860;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:1978,374:0.16:2352
chr2	133014678	rs72869462	A	G	49515.77	.	AC=1;AF=0.500;AN=2;DB;DP=2211;set=Intersection	GT:AD:AF:DP	0/1:876,1332:0.60:2208
chr2	133014703	rs72869464	T	C	48145.77	.	AC=1;AF=0.500;AN=2;DB;DP=1912;set=Intersection	GT:AD:AF:DP	0/1:732,1175:0.62:1907
chr2	133014721	rs72869465	T	C	42118.77	.	AC=1;AF=0.500;AN=2;DB;DP=1582;set=Intersection	GT:AD:AF:DP	0/1:554,1020:0.65:1574
chr2	133014751	rs75204936	T	C	15582.77	.	AC=1;AF=0.500;AN=2;DB;DP=1134;set=Intersection	GT:AD:AF:DP	0/1:595,491:0.45:1086
chr2	133014776	rs72869466	C	T	12806.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.236;QD=17.54;ReadPosRankSum=-0.110;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:405,325:0.45:730
chr2	133014776	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=77;MMLQ=21;MQ=58.9;NF=73;NR=115;PP=2944;QD=20;SC=GGTCAAGCTCCAGGAGACCGG;SbPval=0.49;Source=Platypus;TC=452;TCF=172;TCR=280;TR=188;WE=133014796;WS=133014761;set=Platypus	GT:AD:AF:DP	0/1:264,188:0.42:452
chr2	133014777	rs72869467	A	G	12627.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.247;QD=17.64;ReadPosRankSum=0.141;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:399,317:0.44:716
chr2	133014786	rs72869468	G	A	3846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.601;QD=5.98;ReadPosRankSum=-1.310;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:495,148:0.23:643
chr2	133075726	rs2598810	A	G	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:222,131:0.37:353
chr2	133075904	rs113311843	C	CA	7780.73	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:354,309:0.47:663
chr2	133174527	.	G	A	269.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	133402607	rs1131671	C	T	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	133427297	rs71413517	G	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr2	133472385	rs11329925	CA	C	1100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.866;QD=6.08;ReadPosRankSum=-2.686;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:58,123:0.68:181
chr2	133539460	rs6717116	A	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=-1.026;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:10,29:0.74:39
chr2	133539566	rs6730282	G	A	4606.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:62,209:0.77:271
chr2	133541107	rs16841277	T	A	3079.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:47,142:0.75:189
chr2	133541444	rs12691829	T	C	3830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.04;ReadPosRankSum=-0.780;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:54,99:0.65:153
chr2	133541454	rs12691830	A	G	3824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.00;ReadPosRankSum=0.300;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:53,100:0.65:153
chr2	133542014	rs12616282	T	C	5968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=-1.657;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:80,275:0.77:355
chr2	133542574	rs61995744	C	T	6320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=0.013;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:99,286:0.74:385
chr2	133554288	rs1868076	A	G	6258.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:91,274:0.75:365
chr2	133617935	.	G	A	43.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr2	133618220	rs1447549	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr2	133636209	.	ACACACACACACACACACACG	A	986.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=5.613;MLEAC=1;MLEAF=0.500;MQ=64.16;MQRankSum=1.960;QD=16.18;ReadPosRankSum=1.894;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:24,37:0.61:61
chr2	133683658	rs2577634	G	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.744;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:78,22:0.22:100
chr2	133721547	rs55724759	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr2	134060719	rs7604084	T	C	12474.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:189,592:0.76:781
chr2	135076111	rs4954134	C	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	135096097	rs7598410	T	C	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	135102453	rs3214771	TA	T	1499.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr2	135102742	rs2290048	A	G	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:26,70:0.73:96
chr2	135160755	rs3748900	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:109,57:0.34:166
chr2	135186057	rs62170036	T	G	4909.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:77,230:0.75:307
chr2	135206340	rs2230908	C	A	6979.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:127,316:0.71:443
chr2	135470735	rs2276161	A	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.065;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	135471290	rs4953925	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.527;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.440;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr2	135602601	rs6430545	T	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.678;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr2	135621115	rs146003945	A	G	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:268,121:0.31:389
chr2	135629927	rs12469941	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr2	135655759	rs182224630	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=1.068;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	135677268	rs3769024	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-2.818;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr2	135677471	rs3841862	A	AGTTT	819.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:72,26:0.27:98
chr2	135694354	rs1823118	G	C	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=4.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-2.495;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr2	135694379	rs1374289	C	T	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=1.247;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:99,27:0.21:126
chr2	135703338	rs57267734	CT	C	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.590;QD=2.38;ReadPosRankSum=1.292;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:99,38:0.28:137
chr2	135703650	rs201814332	G	GT	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=4.569;QD=1.02;ReadPosRankSum=1.032;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:242,57:0.19:299
chr2	135705558	rs1979033	G	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	135710322	rs10166142	A	G	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.156;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:111,30:0.21:141
chr2	135711516	rs3814355	C	T	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.020;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:239,76:0.24:315
chr2	135711657	rs3814354	G	A	2007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=710;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.342;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:539,160:0.23:699
chr2	135741061	rs12623713	G	A	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	135745392	rs11888766	G	A	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.254;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:181,70:0.28:251
chr2	135745521	rs149781960	G	A	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=2.372;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:175,51:0.23:226
chr2	135745545	rs11899779	C	T	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-1.096;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:209,70:0.25:279
chr2	135745722	rs10928526	A	G	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.248;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:379,92:0.20:471
chr2	135748872	rs144837592	AAAAAC	A	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.483;QD=6.48;ReadPosRankSum=-1.521;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr2	135872831	.	G	T	7317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DP=456;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=-2.864;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:122,332:0.73:454
chr2	135888078	.	G	T	25	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=25;QD=19.9237375157;SC=TTCACCTGCTGAGGTTGGTGA;SbPval=1.0;Source=Platypus;TC=10;TCF=8;TCR=2;TR=3;WE=135888086;WS=135888068;set=Platypus	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	135911422	rs17261772	T	C	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.184;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:195,66:0.25:261
chr2	135920091	rs16831377	C	T	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=0.610;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:111,39:0.26:150
chr2	135920108	rs56786863	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.750;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:110,36:0.25:146
chr2	135927428	rs16831395	T	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-1.476;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:161,50:0.24:211
chr2	135960553	rs16831434	T	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:142,54:0.28:196
chr2	135960616	.	G	A	49	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=4;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=0;NR=6;PP=49;QD=13.9618687579;SC=AATCATGTATGTTTATACAGG;SbPval=1.0;Source=Platypus;TC=30;TCF=5;TCR=25;TR=6;WE=135960624;WS=135960606;set=Platypus	GT:AD:AF:DP	1/0:24,6:0.20:30
chr2	135965376	rs7578111	T	C	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=1.631;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:194,83:0.30:277
chr2	135974970	.	AC	A	32.73	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:33,6:0.15:39
chr2	135976740	rs16831460	T	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:72,26:0.27:98
chr2	135988127	rs59900519	T	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:162,65:0.29:227
chr2	135988416	rs935615	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:147,52:0.26:199
chr2	136026730	rs143601975	A	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.188;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr2	136107839	rs10496734	G	A	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:25,5:0.17:30
chr2	136148401	rs2043757	A	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr2	136379194	rs3834114	GT	G	101.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr2	136407479	rs1446585	A	G	1515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=0.606;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:358,117:0.25:475
chr2	136466831	rs6735935	C	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,13:0.24:54
chr2	136467164	rs2304367	C	A	4552.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	136467559	rs2304368	C	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-1.180;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr2	136499458	rs111798914	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=1.382;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:287,58:0.17:345
chr2	136527443	rs113881162	G	GTGAT	7108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.32;ReadPosRankSum=-0.013;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:53,174:0.77:227
chr2	136545844	rs1042712	C	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	136546110	rs2278544	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	136548169	rs892716	A	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	136548192	rs1808756	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	136555659	rs2322659	T	C	10928.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:1,418:1.00:419
chr2	136558157	rs748841	C	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr2	136561557	rs2304371	G	A	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:45,142:0.76:187
chr2	136561735	rs2304370	G	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	136565028	rs10928549	C	G	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	136569848	rs12988076	C	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr2	136574968	rs35093754	G	C	3077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=2.147;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:544,211:0.28:755
chr2	136575199	rs6719488	G	T	12266.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:160,550:0.77:710
chr2	136575534	rs4954449	T	C	9316.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr2	136581685	rs3820791	G	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:85,40:0.32:125
chr2	136587238	rs3816088	G	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:149,55:0.27:204
chr2	136594158	rs2236783	G	A	4947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=0.416;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:98,224:0.70:322
chr2	136598316	rs3087350	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:46,12:0.21:58
chr2	136604113	rs4988263	A	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr2	136610598	rs4988226	A	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	136614255	rs309180	G	A	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-0.205;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:23,79:0.77:102
chr2	136622825	rs309177	A	G	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	136633771	rs191079	T	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.893;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:70,26:0.27:96
chr2	136690414	rs34744196	TA	T	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.862;QD=3.79;ReadPosRankSum=0.931;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:71,56:0.44:127
chr2	136740900	rs687670	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.133;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr2	136743172	rs6738266	C	T	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=1.305;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:262,93:0.26:355
chr2	136873549	rs2680880	A	T	1313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-1.463;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:23,66:0.74:89
chr2	137639616	rs1465612	C	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	137640006	rs11298935	CT	C	186.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	137917922	rs4954474	T	A	16509.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr2	138000226	rs7605259	T	C	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	138030271	rs10182152	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr2	138163391	rs1551281	T	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	138169158	rs1463285	T	C	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	138208631	rs1453302	G	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr2	138237038	rs1584435	C	T	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	138321018	rs17742691	G	C	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.256;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-3.614;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr2	138378351	rs58339575	AG	A	34.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:62,7:0.10:69
chr2	138378388	rs1448922	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.025;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr2	138420996	rs10206850	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr2	138721942	rs67985366	ATT	A	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.402;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	138727607	rs3100702	G	A	103.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	138759649	rs11558538	C	T	5602.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:117,263:0.69:380
chr2	138762873	rs3842548	C	CTT	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.054;QD=15.62;ReadPosRankSum=-0.164;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	138771219	rs12475006	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr2	138771760	rs1050891	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr2	139045438	.	GTTTT	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-5.142;QD=1.99;ReadPosRankSum=-0.827;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:24,4:0.14:28
chr2	139045444	rs11900034	T	A	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=5.344;QD=27.34;ReadPosRankSum=1.045;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr2	139045445	rs11900035	T	A	789.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=5.200;QD=27.24;ReadPosRankSum=0.668;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr2	139045855	rs35998722	C	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:265,105:0.28:370
chr2	139045972	rs6733578	T	C	11016.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr2	139045987	rs13033503	C	T	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:328,112:0.25:440
chr2	139046301	rs12691943	A	G	28341.77	.	AC=2;AF=1.00;AN=2;DB;DP=1096;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.95;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,1092:1.00:1092
chr2	139046385	rs13382964	G	A	9063.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr2	139308127	rs35257103	G	A	2035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=2.324;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:41,98:0.71:139
chr2	139308397	rs66690846	TTC	T	721.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=32.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	139429068	rs10803570	G	A	8023.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:140,368:0.72:508
chr2	140992337	rs13387241	C	A	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr2	140997197	rs3748864	T	G	100.98	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	141004513	rs11895946	C	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	141004529	rs2129483	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	141027926	rs3748865	A	G	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:136,62:0.31:198
chr2	141032088	rs1386356	C	T	7326.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr2	141113798	rs13017246	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	141260668	rs4444457	A	G	9038.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr2	141267744	rs1948051	T	C	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	141274576	rs4954672	T	C	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.11;ReadPosRankSum=0.854;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:18,62:0.78:80
chr2	141283603	rs1352047	T	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	141284041	rs7562323	A	G	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	141298467	rs6729619	A	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	141298674	rs13013854	T	C	3801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=-0.185;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:59,172:0.74:231
chr2	141298682	rs11694934	G	C	8081.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.66;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	141298749	rs11694970	G	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	141299317	rs9287535	A	G	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	141473505	rs4954852	A	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr2	141474402	rs5834770	G	GA	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.108;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr2	141474456	rs1372255	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	141527013	rs13002947	A	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr2	141528358	rs73961489	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr2	141528592	rs7599219	T	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	141533646	rs78669171	A	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr2	141533662	rs996361	T	C	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	141571329	rs3749010	T	C	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.296;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:137,48:0.26:185
chr2	141598473	rs35745624	A	AT	4083.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.10;QD=38.89;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	141625834	rs34488899	TA	T	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-2.607;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:79,47:0.37:126
chr2	141709419	rs1429348	T	G	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.097;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:154,54:0.26:208
chr2	141747249	rs1429365	A	T	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:40,84:0.68:124
chr2	141747293	rs1429366	T	C	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr2	141751461	rs11678316	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr2	141751592	rs13007735	G	A	5304.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:143,258:0.64:401
chr2	141762830	rs13413663	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr2	141771058	rs3791766	T	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	141816621	rs1525579	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	141945949	rs1249434	C	T	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	142012027	rs431809	G	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr2	142012036	rs9973397	T	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,30:0.32:93
chr2	142012301	rs373757	T	C	105.10	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	142237868	rs4264514	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	142567738	rs28529494	G	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	143718459	rs3069632	T	TAAAA	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=5.73;ReadPosRankSum=1.781;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr2	143787161	rs6429999	C	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.67;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	143787274	rs6430000	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	143913004	rs2580857	T	G	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	143973860	rs1451805	G	A	111.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.97;ReadPosRankSum=0.566;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	144194565	rs17230746	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=3.229;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	144899559	rs3731958	C	A	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-1.385;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:54,72:0.57:126
chr2	144934655	rs5834992	A	AG	534.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=29.71;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	144934819	.	T	TAA	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.611;QD=8.60;ReadPosRankSum=-1.596;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr2	145121339	rs10206546	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	145146457	.	GA	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.613;QD=1.19;ReadPosRankSum=-1.325;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr2	145157858	rs35213774	A	G	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.840;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-1.558;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:37,64:0.63:101
chr2	145255210	rs12691693	T	C	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	145255399	.	TATATATATATATGTCATTCTCAACATATATATATATATGTCATTCTCAAC	T	90.74	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	147596973	rs4411641	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.350;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	148733548	rs2307399	T	TA	602.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr2	149240657	rs5835195	GT	G	2936.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-0.857;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:48,216:0.82:264
chr2	149243260	rs2121344	G	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr2	149246906	rs111476224	C	CT	592.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr2	149259949	rs73003524	G	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:109,71:0.39:180
chr2	149449185	rs6724787	G	A	10958.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr2	149520214	rs10193313	C	A	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	149804599	rs111543209	C	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.683;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:74,30:0.29:104
chr2	149853960	rs6738277	A	G	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	150069645	rs56171871	C	CGT	7492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=4.753;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.944;QD=22.98;ReadPosRankSum=0.667;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:101,225:0.69:326
chr2	150305703	rs11681264	G	A	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:72,131:0.65:203
chr2	150320627	rs34341723	TA	T	867.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.877;QD=10.98;ReadPosRankSum=2.128;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,66:0.84:79
chr2	150427516	rs4500908	C	T	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	150428849	rs10650419	C	CAAAAAAAAAA	2481.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;QD=37.60;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	150432377	rs12232959	C	G	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	150432469	rs10932467	G	T	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	150432976	rs11545261	C	T	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	150433128	rs11680630	C	G	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	150443689	rs4667420	C	G	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	150443813	rs4667419	C	T	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	151328284	rs11338446	GA	G	2036.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:10,123:0.92:133
chr2	151343988	.	A	AAATAT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.219;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr2	151890227	rs16829311	T	C	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=-0.583;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:33,85:0.72:118
chr2	151900223	rs7589036	T	C	16860.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr2	151900390	rs200971691	TAAAAAC	T	3378.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	152108261	rs4665119	T	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	152109159	rs289885	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	152117780	rs2271811	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:153,65:0.30:218
chr2	152117957	rs2271813	T	C	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:85,137:0.62:222
chr2	152118271	rs55775354	G	A	3941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.551;QD=10.03;ReadPosRankSum=2.048;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:277,116:0.30:393
chr2	152118275	rs56376752	A	G	3963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.556;QD=10.03;ReadPosRankSum=1.994;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:279,116:0.29:395
chr2	152118338	rs35240993	G	GT	1145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.589;QD=4.20;ReadPosRankSum=-1.582;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:195,78:0.29:273
chr2	152138522	rs3771886	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:48,14:0.23:62
chr2	152139416	rs1048135	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.777;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr2	152139493	rs10182245	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-2.802;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	152236045	rs35060021	TA	T	111.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	152266473	rs2290368	T	C	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.530;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:77,32:0.29:109
chr2	152266731	rs2290367	T	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr2	152267061	rs73004072	G	A	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:218,104:0.32:322
chr2	152267072	rs4664045	T	G	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:194,88:0.31:282
chr2	152267672	rs7585604	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	152273503	rs6735771	G	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	152295141	rs16830036	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr2	152298562	rs138147981	T	TTTTTA,TTTTTATTTTATTTTA	377.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	1/2:0.30,0.70:10
chr2	152303171	rs2432941	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr2	152311570	rs2444263	G	A	5484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=-0.757;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:186,267:0.59:453
chr2	152314385	rs16830047	G	A	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=4.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.707;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:68,98:0.59:166
chr2	152314547	rs35044903	C	CA	53.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	152315549	rs2444260	G	T	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	152317905	.	AT	ATT,A	107.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=19;set=Intersection	GT:AF:DP	0/1:0.57:14
chr2	152318713	rs59316798	TATC	T	694.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr2	152320118	rs2123465	G	A	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:38,105:0.73:143
chr2	152322095	rs2444257	A	T	5012.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:98,229:0.70:327
chr2	152331351	.	G	GTT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.17;ReadPosRankSum=-0.608;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	152331418	rs1065177	C	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr2	152342481	rs16830090	A	G	2487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-2.233;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:56,119:0.68:175
chr2	152349026	rs2288195	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr2	152350462	rs4664455	T	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr2	152352843	rs7575451	C	G	4995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.085;QD=14.65;ReadPosRankSum=-0.358;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:104,237:0.70:341
chr2	152360136	rs3835058	AT	A	41.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	152369117	rs13023600	T	C	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	152374800	rs16830136	G	A	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.985;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:49,66:0.57:115
chr2	152382454	rs6721666	C	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr2	152383913	rs2288198	T	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:13,67:0.84:80
chr2	152387553	rs4664475	T	C	4443.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:128,219:0.63:347
chr2	152388228	rs60806638	G	C	6402.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:131,304:0.70:435
chr2	152388415	rs56026241	AT	A	836.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr2	152394534	rs3732310	T	G	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:24,71:0.75:95
chr2	152396726	rs66541369	T	TA	548.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr2	152397232	rs34555492	G	A	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.014;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:245,71:0.22:316
chr2	152402515	.	T	TA	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.243;QD=4.09;ReadPosRankSum=1.117;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:69,49:0.42:118
chr2	152403014	rs4664486	C	T	2542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.368;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:50,122:0.71:172
chr2	152403071	rs11436330	C	CT	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=-0.337;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr2	152404294	rs2288201	C	T	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:10,54:0.84:64
chr2	152409416	rs2288203	C	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr2	152409809	rs4575719	C	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr2	152417064	rs2288206	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr2	152422076	rs2288210	C	G	3480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-3.137;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:108,169:0.61:277
chr2	152422087	rs2288211	A	G	3571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-2.181;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:112,175:0.61:287
chr2	152425692	rs3732312	T	C	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr2	152427249	rs7568873	A	G	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr2	152432886	rs61254943	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	152472417	rs62174707	C	T	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=0.393;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	152474001	rs4303716	A	G	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.066;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	152481977	rs10186482	A	G	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	152490219	rs6709886	A	G	5324.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:64,247:0.79:311
chr2	152490458	rs6710212	A	G	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	152496038	rs13032138	G	A	43.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	152496526	rs6713162	A	G	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:59,124:0.68:183
chr2	152500449	rs13013209	C	G	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:176,73:0.29:249
chr2	152506861	.	T	C	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DP=327;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.549;QD=2.69;ReadPosRankSum=-2.750;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:249,73:0.23:322
chr2	152511778	rs10930723	A	C	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.58;ReadPosRankSum=-0.877;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:10,52:0.84:62
chr2	152515683	rs75807392	G	A	4792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=0.738;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:79,222:0.74:301
chr2	152520027	rs12620077	A	G	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:83,185:0.69:268
chr2	152521096	rs10170273	C	T	3172.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:63,141:0.69:204
chr2	152525471	rs58903550	A	G	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-0.854;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:29,60:0.67:89
chr2	152527572	rs7426114	C	T	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:251,115:0.31:366
chr2	152527608	rs34577613	C	T	4821.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:106,228:0.68:334
chr2	152531077	rs6711382	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:314,134:0.30:448
chr2	152531781	rs12618063	C	A	6939.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:140,333:0.70:473
chr2	152536498	rs6735208	T	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:156,59:0.27:215
chr2	152552062	rs6433569	A	C	2926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.349;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:426,189:0.31:615
chr2	152566433	rs12464543	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-2.085;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr2	152573902	rs34733773	A	AGGC	2314.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:175,68:0.28:243
chr2	152573981	rs4611637	A	G	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.559;QD=4.30;ReadPosRankSum=-1.684;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:246,102:0.29:348
chr2	152580815	rs35686968	C	G	2121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.83;ReadPosRankSum=-0.209;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:38,96:0.72:134
chr2	152581866	rs4300824	T	C	1579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-0.418;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:277,104:0.27:381
chr2	152584153	rs4664499	A	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.754;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	152684704	rs150910136	A	AC	1494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.662;QD=4.27;ReadPosRankSum=-0.119;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:256,94:0.27:350
chr2	152698480	rs1805028	C	T	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:54,80:0.60:134
chr2	152729138	rs770609	T	C	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	152827973	rs7567588	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:85,43:0.34:128
chr2	152828281	rs7607341	C	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr2	152988610	rs5835408	C	CT	6401.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.00;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	152992165	rs139474811	C	CAATA	210.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr2	152992237	rs12612031	G	A	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	153000337	rs12617139	T	A	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	153001359	rs142275525	GAT	G	2079.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.726;QD=24.47;ReadPosRankSum=1.478;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:28,57:0.67:85
chr2	153006452	rs13003423	G	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr2	153378459	rs4664114	T	C	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	153378574	rs4664592	A	G	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	153378652	rs4664593	G	A	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	153405594	rs1155779	G	A	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	153405684	rs12468789	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	153415170	rs6705427	A	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr2	153415244	rs72868279	T	C	2434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=0.450;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:56,134:0.71:190
chr2	153415376	rs6434098	T	G	4048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=4.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=1.022;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:79,188:0.70:267
chr2	153417325	rs6713836	A	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr2	153435288	rs12693407	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	153468187	rs2304558	C	T	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.195;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:153,63:0.29:216
chr2	153471255	rs70974877	T	TCAAAA	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,4:0.18:22
chr2	153473435	rs7596408	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.693;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	153473492	rs13417781	G	A	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=0.006;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:47,23:0.33:70
chr2	153473521	rs12693415	A	C	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-1.141;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:73,42:0.37:115
chr2	153473794	rs2304556	T	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr2	153475253	rs13413144	A	T	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	153476066	rs5835439	G	GCCA	11555.73	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.88;QD=41.72;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:6,271:0.98:277
chr2	153478931	rs7609122	T	C	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	153481943	rs2346532	T	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	153483257	rs7604573	T	C	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr2	153483281	rs9989874	A	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	153492910	rs1561267	G	T	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	153497168	rs1465818	C	T	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	153504552	rs12693429	G	A	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:22,69:0.76:91
chr2	153514583	rs6713779	G	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr2	153519524	rs1036526	A	G	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-1.344;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:16,40:0.71:56
chr2	153520782	rs3762507	A	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	153520819	rs3762506	C	A	117.56	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	153529361	rs2304559	T	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	153533260	rs11544718	G	A	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.122;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr2	153535670	rs10166987	C	T	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	153549814	rs10172024	G	C	2436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=1.398;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:51,117:0.70:168
chr2	153572438	rs2346548	C	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.571;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	153572783	rs116043493	C	T	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	153576489	rs183696101	T	C	4656.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:115,214:0.65:329
chr2	153576548	.	G	GTCAGTCTTAAATGATTGGCTGCCAATGTTTCATTTCTTTATCATTCCCCTCCCCCCTTTTTTACCCTTTTTTGAATGTGCATGGAATGTAAATTA	3576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.210;QD=28.61;ReadPosRankSum=-1.806;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:52,73:0.58:125
chr2	153577013	rs9646744	G	A	3232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=1.373;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:80,154:0.66:234
chr2	154800874	rs4318348	A	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-1.753;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr2	155294364	.	TAA	T	173.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.791;QD=12.41;ReadPosRankSum=1.207;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	155306884	rs201440806	A	AT	4184.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.99;SOR=1.533;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	155306885	rs697648	C	T	4193.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.561;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	155555195	rs5835535	T	TC	4859.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.066;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.76;ReadPosRankSum=1.700;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,157:0.99:158
chr2	155711357	rs17642086	T	C	6045.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:122,284:0.70:406
chr2	157183211	rs35479735	TC	T	4682.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	157189011	rs834836	G	C	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	157352734	rs55843224	CT	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.820;QD=0.78;ReadPosRankSum=-1.332;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:59,16:0.21:75
chr2	157370018	.	G	GT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-0.398;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr2	157406249	rs2116665	G	A	6257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=-0.092;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:121,283:0.70:404
chr2	157406296	rs2116664	A	C	3888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=1.044;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:72,180:0.71:252
chr2	157425502	.	CT	C,CTT	513.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=6.533;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.69;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.501;SOR=0.139;set=HC	GT:AD:AF:DP	1/2:6,16,28:0.32,0.56:50
chr2	157427593	rs1469652	T	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	157427837	rs1469651	C	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr2	157427850	rs1469650	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr2	157467040	rs11892929	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-2.330;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	157467106	rs11894134	T	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr2	158157361	rs3214040	C	T	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	158162475	rs3214039	C	T	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	158162521	rs3816595	T	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	158165004	rs6728956	C	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	158180784	.	CA	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=4.641;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-2.162;QD=1.08;ReadPosRankSum=0.384;SOR=1.489;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr2	158275111	rs5835667	T	TA	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.885;QD=7.19;ReadPosRankSum=2.135;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:35,46:0.57:81
chr2	158283710	rs155614	A	G	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	158284056	rs155613	C	T	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	158291107	rs70987792	T	TAG	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	158291188	rs11904180	A	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	158291361	.	T	TCACA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-0.674;QD=8.29;ReadPosRankSum=-0.598;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	158395079	rs7576514	C	G	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.807;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:197,57:0.22:254
chr2	158400908	rs6728987	C	T	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-1.052;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:66,46:0.41:112
chr2	158412878	rs13420239	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.579;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr2	158443889	rs4556933	G	A	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:206,98:0.32:304
chr2	158626980	rs1146031	C	T	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	158655883	rs111834201	C	CAA	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr2	158978178	rs10804389	C	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr2	159028800	rs2222390	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	159035344	rs3836162	A	AT	478.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:61,33:0.35:94
chr2	159077019	rs958671	A	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	159166069	rs7559772	T	C	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	159195225	rs11686762	T	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	159312733	rs1111212	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.856;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	159312776	rs3796107	GA	TT	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=5.496;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.96;ReadPosRankSum=1.065;SOR=1.575;set=HC	GT:AD:AF:DP	0/1:22,51:0.70:73
chr2	159312785	.	T	C	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.743;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:64,27:0.30:91
chr2	159389762	rs35112233	C	T	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:23,80:0.78:103
chr2	159434492	rs2356188	G	A	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	159434500	rs2356189	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.38;ReadPosRankSum=-1.468;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	159434727	rs10933494	T	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr2	159434802	rs72184107	ATC	A	618.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.57;ReadPosRankSum=-1.144;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:2,17:0.89:19
chr2	159477439	rs147357610	CTT	C	2122.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:21,68:0.76:89
chr2	159517972	rs143322313	G	T	3659.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:84,171:0.67:255
chr2	159519368	rs3764835	G	A	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	159530651	rs2711034	A	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr2	159534874	rs2356506	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	159534889	rs2711040	C	T	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr2	159651973	rs1356173	G	A	8974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=-0.938;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:168,419:0.71:587
chr2	159663599	rs9869	T	C	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=3.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-0.255;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:209,93:0.31:302
chr2	159663616	rs12535	G	A	4250.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:83,204:0.71:287
chr2	159672168	rs1515922	G	A	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=3.013;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:98,29:0.23:127
chr2	159672252	rs61740878	G	A	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.817;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:257,58:0.18:315
chr2	159672442	rs10016	G	A	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	159954175	rs34588551	C	T	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:32,87:0.73:119
chr2	159992572	rs35935932	C	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	159992930	.	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.68;ReadPosRankSum=-0.561;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	160005600	rs72951453	G	A	413.80	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr2	160019863	rs12466551	A	G	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	160032843	rs72951482	A	T	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	160033174	rs759034	A	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	160034919	rs4665031	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	160035207	rs6748288	T	C	15092.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr2	160042430	rs13389867	G	A	1663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.407;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:401,124:0.24:525
chr2	160055448	rs13430891	T	A	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	160073895	rs4665042	G	C	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr2	160075886	rs146371641	G	GC	6151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.728;QD=18.99;ReadPosRankSum=0.967;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:111,213:0.66:324
chr2	160076026	rs2303334	C	G	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:17,52:0.75:69
chr2	160076077	rs2303335	T	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr2	160082354	rs12692544	C	T	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.63;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	160082354	.	CATAATGGCTA	TATAATGGCTA,TATAATGGCTG	945	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=22;MQ=59.87;NF=57,30;NR=64,37;PP=433,945;QD=3.86587778965;SC=TAATTGGGTACATAATGGCTA;SbPval=0.54;Source=Platypus;TC=121;TCF=57;TCR=64;TR=121,67;WE=160082372;WS=160082344;set=Platypus	GT:AF:DP	0/1:1.00:121
chr2	160082364	rs34344829	A	G	2788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-1.735;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:70,133:0.66:203
chr2	160082384	rs13419975	T	A	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:64,109:0.63:173
chr2	160084224	rs2042494	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	160084263	rs2042495	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	160084473	rs2288110	A	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.817;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	160084534	rs2288111	A	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	160085506	rs72955954	A	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr2	160086653	rs4664276	CA	TG	5313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.758;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:368,156:0.30:524
chr2	160086692	rs3821296	A	G	2344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.694;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:392,157:0.29:549
chr2	160087535	rs3821301	T	G	6579.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	160112881	rs7591849	G	T	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:30,74:0.71:104
chr2	160114437	rs3213715	G	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr2	160116281	rs4665052	A	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr2	160132196	rs35620648	A	AC	1663.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	160136337	rs174264	G	A	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	160176943	rs174229	A	C	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	160182302	rs415793	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-0.586;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:72,12:0.14:84
chr2	160203934	rs965163	A	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	160231108	rs6742788	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	160243183	rs918351	TA	AT	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	160261721	rs35567166	T	C	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	160261729	rs74694096	AC	A	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	160289911	rs10187471	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.953;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr2	160294842	rs3213790	A	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.094;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr2	160295297	rs2302923	C	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	160295732	rs13417010	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:143,52:0.27:195
chr2	160310246	rs10202670	A	G	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-1.700;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:92,38:0.29:130
chr2	160599717	rs17813964	C	G	2826.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:47,128:0.73:175
chr2	160602258	rs59109898	A	G	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	160604452	rs11555185	C	T	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=2.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.469;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:357,129:0.27:486
chr2	160605268	rs1365803	T	C	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	160605489	rs10929950	C	T	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	160615943	.	AAAT	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	160621354	rs5835760	G	GT	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;QD=19.58;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	160628607	rs17229271	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr2	160637267	rs2303552	C	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.509;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr2	160637324	rs2303551	A	G	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	160654524	rs2556106	G	T	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	160663435	rs12463589	T	C	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	160663678	rs7566887	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	160673519	rs35941588	G	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr2	160673526	rs2059696	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr2	160676350	rs17827158	T	C	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.141;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:91,43:0.32:134
chr2	160676427	rs12692566	C	A	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	160676445	rs36120198	A	AT,ATT	1262.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=56;set=Intersection	GT:AF:DP	1/2:0.56,0.44:48
chr2	160688351	rs6755783	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	160691978	rs2303548	G	A	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:30,71:0.70:101
chr2	160698700	rs41265133	A	C	1076.78	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:5,46:0.90:51
chr2	160708645	rs2162500	C	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr2	160708923	rs36091128	GT	G	318.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.126;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=31.87;ReadPosRankSum=-1.645;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr2	160708933	rs72158678	GT	G	318.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=31.87;ReadPosRankSum=-1.645;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr2	160710922	rs2729705	T	C	2474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=-0.964;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:44,121:0.73:165
chr2	160711045	rs3951216	G	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.123;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr2	160711556	rs975490	T	G	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	160729134	rs1397705	A	C	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	160729186	rs10168271	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.207;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=6.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=1.447;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	160737495	rs2729712	A	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	160737560	rs2729711	G	T	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	160743040	rs2271381	T	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.200;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr2	160760972	rs1397707	C	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	160805993	rs6726923	C	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	160807742	rs952184	A	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	160808075	rs3828323	C	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr2	160825936	.	T	C	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.032;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:150,33:0.18:183
chr2	160833188	rs2715918	A	G	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,76:0.71:107
chr2	160872989	rs10563068	GGT	G	2025.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr2	160873007	rs189059429	G	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.311;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.08;MQRankSum=-2.338;QD=5.43;ReadPosRankSum=0.587;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:73,33:0.31:106
chr2	160873021	rs2715939	G	A	2070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.82;MQRankSum=2.466;QD=14.90;ReadPosRankSum=0.844;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:47,92:0.66:139
chr2	160873270	rs2667040	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr2	160873294	rs3833577	T	TA	169.75	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	160876827	rs1511213	A	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	160879259	rs33985939	C	T	5247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=1.162;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:97,248:0.72:345
chr2	160885418	rs35771982	G	C	6586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=0.365;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:111,306:0.73:417
chr2	160885442	rs3749117	T	C	7479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=-1.288;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:126,348:0.73:474
chr2	160889673	rs2203053	G	A	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:43,116:0.73:159
chr2	160901517	rs4665143	A	G	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	160919020	rs3749119	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr2	160919040	rs11285500	AC	A	1273.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	160958349	rs34330288	GA	G	688.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.359;QD=15.31;ReadPosRankSum=1.991;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr2	160964057	rs13009231	G	T	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	160964057	.	GGA	TGG	1164	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=26;MQ=60.0;NF=31;NR=6;PP=1164;QD=32.9045371584;SC=CAAAGCTGTTGGAGTCATGGC;SbPval=0.62;Source=Platypus;TC=40;TCF=33;TCR=7;TR=37;WE=160964067;WS=160964047;set=Platypus	GT:AD:AF:DP	1/1:3,37:0.93:40
chr2	160964059	rs13008664	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.89;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	160968743	rs66470452	CA	C	1090.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	160983060	rs2305819	G	C	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=-2.126;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:46,94:0.67:140
chr2	161028992	rs1037694	T	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	161029218	rs2305818	G	A	8245.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	161169828	rs10929977	C	G	882.88	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:5,41:0.89:46
chr2	161174693	rs1430	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.178;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	161797329	rs1524626	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr2	161797513	rs1524625	A	G	2752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=-1.004;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:38,129:0.77:167
chr2	162059969	rs11884495	A	T	4729.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	162091836	rs3754970	T	C	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	162175290	rs1116165	T	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	162224193	rs58162668	G	GT	2915.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	162247772	rs1921674	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	162280748	rs890076	G	A	8085.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr2	162757307	rs77357117	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr2	162815262	rs12466127	C	A	427.10	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr2	162821515	rs4233647	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr2	162873188	rs2970931	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	162875477	.	C	CT	25	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.4999;HP=12;HapScore=2;MGOF=0;MMLQ=26;MQ=58.75;NF=0;NR=3;PP=25;QD=10.3333333333;SC=ATCTTTAGGACTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=3;WE=162875485;WS=162875467;set=Platypus	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	162891848	rs6432708	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:62,18:0.23:80
chr2	162894766	rs10930040	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	162904013	rs116302758	T	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr2	163044664	rs139343717	T	C	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.635;QD=3.99;ReadPosRankSum=-0.526;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:173,64:0.27:237
chr2	163051415	rs1468916	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	163124051	rs1990760	C	T	6478.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	163128824	rs3747517	T	C	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr2	163236376	.	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.886;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr2	163694878	rs4667768	C	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.82;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	163694886	rs4667769	G	A	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.03;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	165349459	rs1051160	G	A	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.70;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	165349459	.	GTAAT	ATAAC,ATAAT	509	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=26;MQ=59.78;NF=22,32;NR=2,4;PP=509,143;QD=23.4361614526;SC=TTTTCACATGGTAATGTTTTC;SbPval=0.72;Source=Platypus;TC=38;TCF=34;TCR=4;TR=24,36;WE=165349471;WS=165349449;set=Platypus	GT:AF:DP	0/1:0.63:38
chr2	165349463	rs11765	T	C	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=-0.564;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:17,36:0.68:53
chr2	165353712	rs8192673	C	T	11976.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr2	165358655	rs7584035	T	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	165358672	rs4667463	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	165364887	rs8192674	G	A	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,78:0.67:117
chr2	165381542	rs34570870	C	A	528.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=1.879;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr2	165383686	.	AATATATATATATATATAT	A	130.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.10;ReadPosRankSum=1.282;SOR=3.229;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	165424994	rs16849597	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.288;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:96,24:0.20:120
chr2	165476253	rs61748245	A	T	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.651;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.474;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:350,134:0.28:484
chr2	165477836	rs10200142	G	A	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=-0.131;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,60:0.67:89
chr2	165477903	rs62173895	G	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr2	165544450	rs6738627	G	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	165548569	rs10490694	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	165551201	rs7607980	T	C	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=0.356;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:23,54:0.70:77
chr2	165552353	rs34305002	GA	G	194.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	165557318	rs6712203	C	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=1.536;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr2	165578581	rs6414069	A	G	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:80,177:0.69:257
chr2	165584407	rs12692743	C	T	516.80	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr2	165630460	rs355865	T	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr2	165657066	rs62173958	T	C	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:35,83:0.70:118
chr2	165657096	rs62173959	G	C	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:24,66:0.73:90
chr2	165657142	rs7588491	A	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr2	165657185	rs355915	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.167;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr2	165694012	rs200406641	C	CA	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-1.190;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr2	165698715	rs71028447	A	AG	354.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	165809426	rs17353791	T	C	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,53:0.73:73
chr2	165811554	rs11350253	GA	G	587.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.854;QD=9.96;ReadPosRankSum=2.174;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:12,47:0.80:59
chr2	165996107	rs1946892	T	A	3469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=0.712;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:85,169:0.67:254
chr2	166012203	rs3731760	C	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:24,56:0.70:80
chr2	166153499	rs7593568	A	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	166167166	rs7560348	T	A	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	166170127	rs2121371	T	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	166172317	rs1838846	A	G	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.31;ReadPosRankSum=-2.444;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:10,50:0.83:60
chr2	166179650	rs1867864	C	T	3765.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:62,173:0.74:235
chr2	166183577	rs17184707	C	T	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr2	166221569	.	TG	T	79	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=10;HapScore=4;MGOF=0;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=79;QD=45.5;SC=ATACAGAAGATGGGGGGGGGG;SbPval=1.0;Source=Platypus;TC=13;TCF=13;TCR=0;TR=2;WE=166221590;WS=166221559;set=Platypus	GT:AD:AF:DP	1/0:11,2:0.15:13
chr2	166221582	rs3769951	C	T	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	166221883	rs67174953	GTATC	G	220.79	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	166224047	rs2304010	G	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	166229922	rs6432821	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	166245230	rs2060198	T	A	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:64,177:0.73:241
chr2	166514165	rs12620509	C	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr2	166535918	rs777346	C	T	7261.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	166610972	rs67722214	CA	C	387.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr2	166611006	rs62174818	C	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr2	166611086	rs41268661	C	T	3162.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:75,151:0.67:226
chr2	166618262	rs1968294	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr2	166621354	rs2113840	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	166626606	rs4667836	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,26:0.30:86
chr2	166740578	rs34701755	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.714;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr2	166770120	rs10176588	A	G	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,56:0.67:84
chr2	166771663	rs7590559	C	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.11;ReadPosRankSum=0.241;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	166773971	rs6750044	G	A	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=-0.437;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr2	166781242	rs58208220	T	TA	800.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr2	166788336	rs7592429	T	C	4919.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.31;ReadPosRankSum=-1.242;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:2,185:0.99:187
chr2	166797646	rs1432273	C	T	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.897;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:235,115:0.33:350
chr2	166799596	rs13000534	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	166799893	rs10930190	G	A	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	166802306	rs5836067	ACTGT	A	482.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr2	166810161	.	G	GCCCGCTCA	6724.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.95;MQRankSum=0.384;QD=25.47;ReadPosRankSum=-1.026;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:2,262:0.99:264
chr2	166810373	rs1347041	A	G	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	166810433	rs5836068	GT	G	1670.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	166892444	rs34673057	TAAA	T	985.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.80;ReadPosRankSum=1.142;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr2	166892448	rs114707732	A	T	412.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=0.540;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr2	166892788	rs2298771	C	T	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:59,84:0.59:143
chr2	166893081	rs7601520	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr2	166894165	rs67819222	C	CT	298.86	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr2	166894230	rs2020318	T	C	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.40;ReadPosRankSum=0.667;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:31,105:0.77:136
chr2	166895819	rs10168027	A	G	49.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	166895913	rs199995171	CTT	C	849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=-0.949;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:8,38:0.83:46
chr2	166896143	rs2126152	T	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.631;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	166897864	rs6432860	A	G	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:43,125:0.74:168
chr2	166897989	rs11394960	G	GA	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.795;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	166898017	rs10198801	G	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	166900606	rs6753355	A	C	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	166903188	rs538921	A	C	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	166903228	rs6432861	C	T	3360.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:79,159:0.67:238
chr2	166903445	rs7580482	T	C	4258.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:70,190:0.73:260
chr2	166904346	rs1461193	G	A	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:28,88:0.76:116
chr2	166905375	rs1542484	A	G	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=-0.801;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:34,60:0.64:94
chr2	166905480	rs994399	G	A	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.547;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.69;ReadPosRankSum=0.456;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:10,58:0.85:68
chr2	166905572	rs1542483	T	A	173.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	166909544	rs3812718	C	T	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:52,168:0.76:220
chr2	166909559	rs3812719	C	A	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:43,123:0.74:166
chr2	166915335	rs10930201	C	A	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	166930214	rs566839	T	A	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	167060449	rs10180721	A	T	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	167060980	rs77944059	GAAAC	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	167085124	rs10199799	T	G	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.24;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	167085141	rs58519838	CTT	C	4872.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	167090042	rs722204	G	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	167099158	rs6746030	A	G	7767.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr2	167162277	rs4429487	G	A	8838.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.282;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=3.278;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=-0.547;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:1,350:1.00:351
chr2	167163043	rs9646771	T	C	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	167163199	rs9646772	A	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	167163663	rs4447616	C	T	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	167168093	rs6432901	C	T	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	167279922	rs6738031	C	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr2	167284520	rs3748895	T	C	294.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	167313313	rs67265532	AATAT	A	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	167313329	rs71428927	T	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	167313333	.	T	C	196.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	167313337	rs7593207	T	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	167322522	rs7593452	G	A	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,53:0.76:70
chr2	167327064	rs12992062	A	G	95.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.17;ReadPosRankSum=-0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	167328750	rs2293567	C	T	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:31,59:0.66:90
chr2	167334085	rs7565062	G	T	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:25,62:0.71:87
chr2	168074535	rs73972208	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	168096268	rs77160941	A	AT	335.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=-0.075;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr2	168098199	rs76201476	A	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	168099738	rs10497323	T	C	4430.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:85,203:0.70:288
chr2	168099775	rs16853305	C	G	8699.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:88,226:0.72:314
chr2	168099796	rs16853306	T	C	9061.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:104,246:0.70:350
chr2	168103304	rs16853309	G	A	5482.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:82,251:0.75:333
chr2	168103863	rs7581012	G	A	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:63,158:0.71:221
chr2	168103925	rs7607246	A	G	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=0.705;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:43,108:0.72:151
chr2	168104199	rs7581190	C	T	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:58,110:0.65:168
chr2	168104370	rs61748715	A	C	5212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-2.218;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:100,246:0.71:346
chr2	168104627	rs61750760	G	A	4730.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:64,216:0.77:280
chr2	168104988	rs59889092	G	T	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:52,169:0.76:221
chr2	168106085	rs16853328	G	A	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:55,125:0.69:180
chr2	168106246	rs16853330	G	A	4223.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:91,201:0.69:292
chr2	168107155	rs16853331	G	A	6383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=0.580;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:126,293:0.70:419
chr2	168107491	rs3749004	A	G	3483.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:46,154:0.77:200
chr2	168108357	rs1842233	A	G	5115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.661;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:114,235:0.67:349
chr2	168115710	rs3749006	T	G	4866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=-0.990;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:91,224:0.71:315
chr2	168115769	rs16853344	G	C	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:107,242:0.69:349
chr2	168115797	rs75758327	G	C	4914.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:94,230:0.71:324
chr2	168986154	rs925846	A	G	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	169103796	.	C	CGCCGGG	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-0.298;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr2	169403993	.	AATCCTACCAACACTTTATTGGGATAATTGAGTAATGTGTAACTGGTGGCATTAAGAATCAC	A	931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.190;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=13.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.73;ReadPosRankSum=-0.231;SOR=2.727;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr2	169487610	rs11347055	GT	G	62.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.90;ReadPosRankSum=0.366;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	169674655	rs830026	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	169674663	rs830025	A	T	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	169674764	rs830024	C	G	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	169681278	rs11374385	T	TTTTGTTTG,TTTTGTTTGTTTG	2237.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.91;QD=46.62;SOR=1.562;set=HC	GT:AD:AF:DP	1/2:0,20,28:0.42,0.58:48
chr2	169690729	rs522893	T	C	1438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=-1.221;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:36,70:0.66:106
chr2	169690748	rs13384876	A	G	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.822;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:99,42:0.30:141
chr2	169707428	rs540652	C	T	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	169707552	rs488621	A	G	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	169712115	rs58938408	C	CA	298.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;QD=14.94;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:3,17:0.85:20
chr2	169713084	rs11385898	T	TA	2007.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:17,113:0.87:130
chr2	169717541	rs2632372	T	C	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	169721377	rs479661	G	A	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	169727879	.	GA	AA	190	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000,1.0000;HP=9;HapScore=4;MGOF=2;MMLQ=27;MQ=59.94;NF=5,4;NR=1,8;PP=58,190;QD=15.4618687579;SC=ATAAAAACAAGAAAAAAAGAG;SbPval=0.92;Source=Platypus;TC=28;TCF=18;TCR=10;TR=6,12;WE=169727887;WS=169727869;set=Platypus	GT:AD:AF:DP	0/1:22,6:0.21:28
chr2	169727879	.	GA	GAA	190	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000,1.0000;HP=9;HapScore=4;MGOF=2;MMLQ=27;MQ=59.94;NF=5,4;NR=1,8;PP=58,190;QD=15.4618687579;SC=ATAAAAACAAGAAAAAAAGAG;SbPval=0.92;Source=Platypus;TC=28;TCF=18;TCR=10;TR=6,12;WE=169727887;WS=169727869;set=Platypus	GT:AD:AF:DP	0/1:5,12:0.71:17
chr2	169727879	rs61598834	G	A,GA	899.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.56;QD=24.99;SOR=1.209;set=HC	GT:AD:AF:DP	1/2:0,9,27:0.25,0.75:36
chr2	169728069	.	GAAA	G	2235.73	.	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.49;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:2,69:0.97:71
chr2	169763148	rs560887	T	C	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	169764176	rs492594	G	C	9576.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr2	169764546	rs2232328	C	G	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:192,78:0.29:270
chr2	169791823	rs199940188	T	C	2599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-1.550;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:353,163:0.32:516
chr2	169814347	rs853773	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	169824739	rs4148789	T	TA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=40.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	169824743	rs2389613	C	A	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	169824749	rs28405534	C	A	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	169826877	rs2193831	C	T	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	169828325	rs2241340	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	169830051	rs2389605	C	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	169830155	rs2287623	G	A	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	169830328	rs2287622	A	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	169836182	rs368187290	CAAAAAAAAAAA	C	1002.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;QD=37.14;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	169842809	rs2287618	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	169994021	rs369228824	AAG	A	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=3.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.270;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:111,24:0.18:135
chr2	169997051	rs990626	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.734;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr2	170002500	rs41265945	C	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.066;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:119,38:0.24:157
chr2	170003432	rs4667591	T	G	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	170010985	rs2075252	T	C	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.812;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:130,27:0.17:157
chr2	170025083	rs2229268	A	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.740;QD=2.58;ReadPosRankSum=1.107;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:282,78:0.22:360
chr2	170025198	rs143342962	GA	G	2479.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:56,137:0.71:193
chr2	170029800	rs17848190	T	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:75,33:0.31:108
chr2	170058497	rs16856600	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr2	170059190	rs2239599	T	C	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:23,76:0.77:99
chr2	170063783	rs13417389	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr2	170077165	rs3815572	C	T	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	170082013	rs2075246	A	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:67,20:0.23:87
chr2	170092395	rs2229267	A	G	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-1.246;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:273,101:0.27:374
chr2	170096018	rs830973	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.934;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:122,36:0.23:158
chr2	170099446	rs831041	T	G	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:343,132:0.28:475
chr2	170099473	rs831042	T	C	2529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.316;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:454,175:0.28:629
chr2	170099895	rs2075255	A	C	2466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=1.098;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:230,77:0.25:307
chr2	170099899	rs2075254	G	A	2485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=1.662;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:250,79:0.24:329
chr2	170103336	rs831043	T	C	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.025;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:257,78:0.23:335
chr2	170103351	rs2075249	G	T	8255.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr2	170115588	rs2241190	T	C	2399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-1.952;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:426,169:0.28:595
chr2	170127380	rs145964808	TAC	T	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.321;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr2	170129528	rs830994	G	A	8262.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	170129636	rs830995	A	G	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	170134191	rs831003	G	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	170139346	rs831010	C	T	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	170139639	rs831011	A	G	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	170150671	rs2229266	G	A	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	0/1:564,228:0.29:792
chr2	170218816	rs1559013	T	C	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	170218847	rs1559014	C	G	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	170336024	rs1879466	G	C	11277.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,443:1.00:443
chr2	170339003	rs2353187	C	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	170355944	rs12692909	A	T	211.98	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	170359758	rs56293740	G	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr2	170393925	rs2683423	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr2	170394487	rs2290005	T	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr2	170403030	rs2253680	T	C	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	170411485	rs2592823	C	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	170411693	rs2683455	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	170413601	rs2592824	A	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	170413897	rs56157235	G	GA	108.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	170425508	.	CA	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-1.191;QD=2.10;ReadPosRankSum=1.444;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr2	170425523	rs2683446	A	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.25;QD=28.84;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	170462574	rs34753364	T	A	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=0.527;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:47,72:0.61:119
chr2	170463551	rs2592813	T	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	170463679	rs6759667	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.595;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	170488454	rs3754921	A	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.693;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:85,42:0.33:127
chr2	170492567	rs2290007	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	170492584	rs2290008	T	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.555;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr2	170493103	rs1050354	T	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr2	170502343	rs79104083	A	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr2	170504672	.	CAAAA	C	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.71;ReadPosRankSum=1.094;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	170504700	rs56136802	A	T	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=0.593;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	170505684	rs3213946	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.677;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr2	170531572	rs11682248	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	170531614	rs11688600	A	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.96;ReadPosRankSum=-1.960;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	170550839	rs3820952	A	G	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:213,103:0.33:316
chr2	170550956	rs1446901	A	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.397;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	170550963	rs62621446	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.73;ReadPosRankSum=0.674;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr2	170592709	rs2288331	A	G	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.504;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:96,51:0.35:147
chr2	170597835	rs2303556	G	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr2	170605981	rs4667607	C	T	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	170606293	rs149836052	T	TA	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.611;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:69,28:0.29:97
chr2	170606609	.	TATAC	T	107	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=4;MGOF=55;MMLQ=23;MQ=60.0;NF=3;NR=0;PP=107;QD=47.3333333333;SC=CATATATGTGTATACATATAT;SbPval=1.0;Source=Platypus;TC=4;TCF=3;TCR=1;TR=3;WE=170606629;WS=170606599;set=Platypus	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	170606621	.	T	C	107	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=4;MGOF=55;MMLQ=23;MQ=60.0;NF=2;NR=0;PP=107;QD=70.8856062736;SC=TACATATATATGTGTGTATAT;SbPval=1.0;Source=Platypus;TC=6;TCF=4;TCR=2;TR=2;WE=170606629;WS=170606599;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr2	170606658	rs1469355	G	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	170606724	rs10164599	A	G	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	170632807	rs10930375	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.09;ReadPosRankSum=-2.515;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	170632896	rs10930376	T	C	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.573;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:41,35:0.46:76
chr2	170632960	rs150673586	C	CA	1100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-2.310;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:64,69:0.52:133
chr2	170632969	rs55969365	C	A	2923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.74;ReadPosRankSum=-0.860;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:62,79:0.56:141
chr2	170633023	rs11422611	T	TA	2866.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=1.049;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:70,94:0.57:164
chr2	170633067	rs6745191	G	T	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=-1.316;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:74,100:0.57:174
chr2	170633103	rs11325477	GA	G	4251.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.65;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	170668106	rs2246149	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-0.623;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	170668813	rs3731674	C	T	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,60:0.79:76
chr2	170676227	rs1541776	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.98;ReadPosRankSum=-1.434;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	170677837	rs59311986	AC	A	236.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr2	170677855	rs34089373	G	GT	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-2.206;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	170684224	rs2303555	C	T	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr2	170762487	rs10171268	C	T	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	170782037	rs1461958	C	T	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	170782338	rs13016918	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr2	170783769	rs72891954	G	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr2	170821010	rs10197085	A	G	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:176,91:0.34:267
chr2	170850738	rs1461959	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	170870595	rs10497357	T	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:28,81:0.74:109
chr2	170871976	rs13028230	A	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	170911950	rs6741614	T	C	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:130,63:0.33:193
chr2	170917648	rs10203212	A	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.964;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:40,29:0.42:69
chr2	170917983	rs35032863	CT	C	1765.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=5.925;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.301;QD=14.84;ReadPosRankSum=1.604;SOR=0.184;set=HC	GT:AD:AF:DP	1/1:12,107:0.90:119
chr2	170929880	rs10202446	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,21:0.28:74
chr2	171055942	rs35521414	T	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr2	171056569	rs6756347	T	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	171070850	rs13423313	G	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:208,71:0.25:279
chr2	171070912	rs13385825	T	C	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=1.909;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:198,85:0.30:283
chr2	171071369	rs4667626	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:76,42:0.36:118
chr2	171073887	rs2161916	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:253,112:0.31:365
chr2	171192084	rs12466203	G	A	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.361;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=0.626;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:87,44:0.34:131
chr2	171243920	rs72874578	C	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-2.174;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	171248778	rs62170829	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr2	171259308	rs17579757	T	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.246;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	171260708	rs10930425	C	A	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:22,71:0.76:93
chr2	171260787	rs6736609	G	A	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:83,177:0.68:260
chr2	171260820	rs6751520	T	C	3353.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:89,158:0.64:247
chr2	171261021	rs6751781	T	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	171264091	rs138990294	T	TGCTCTGGATATGAAA,TGCTCTGGATATGAAAGCTCTGGATATGAAA	1452.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	1/2:0.73,0.27:22
chr2	171264179	rs72876321	C	T	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.695;QD=5.45;ReadPosRankSum=-0.086;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:180,89:0.33:269
chr2	171300575	rs17426211	C	A	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:72,117:0.62:189
chr2	171300648	rs4667639	T	A	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	171319997	rs12477518	A	C	4313.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:93,210:0.69:303
chr2	171323280	rs67549561	CTGTGTCCTAAGAT	C	1193.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr2	171323328	rs4359605	T	C	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.308;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=11.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=0.275;SOR=0.029;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	171355198	rs6761297	A	G	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr2	171355329	rs6733198	G	C	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	171356274	rs10185178	G	A	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	171356423	rs9752383	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	171358211	rs7593940	G	A	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	171358474	rs7608168	T	A	98.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	171508490	rs10718459	CA	C	1060.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	171570488	rs7563812	C	G	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=0.237;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:43,100:0.70:143
chr2	171572940	rs3749036	G	A	13120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=897;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=0.453;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:265,611:0.70:876
chr2	171627676	rs1861462	T	G	13869.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr2	171632225	rs17694506	C	T	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	171632385	rs10626619	C	CTT	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	171632401	rs13028382	C	T	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=1.512;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr2	171634347	rs11334749	TA	T	2881.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:74,87:0.54:161
chr2	171649402	rs3764916	C	T	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=0.727;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:26,42:0.62:68
chr2	171654663	rs2287111	A	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	171678379	rs2241165	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	171678625	rs769404	T	C	3497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=687;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=1.395;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:461,222:0.33:683
chr2	171704396	rs769408	C	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr2	171705157	rs35403424	AT	A	1929.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:11,112:0.91:123
chr2	171786169	rs2676158	A	G	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	171786239	rs3770442	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.547;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	171793357	rs35123411	C	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr2	171811092	.	A	C	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=1.306;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:69,25:0.27:94
chr2	171818289	rs2557804	G	A	11071.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr2	171822466	rs4668356	C	T	41712.77	.	AC=2;AF=1.00;AN=2;DB;DP=1609;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,1585:1.00:1585
chr2	171851048	rs11397597	C	CA	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.808;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr2	171906469	rs3217296	GA	G	1108.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:99,39:0.28:138
chr2	171910313	rs11553951	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.468;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,28:0.33:86
chr2	171913207	rs200719254	CAA	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.605;QD=9.61;ReadPosRankSum=1.063;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	171916664	rs2676130	A	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	171974424	rs142720641	TACAC	T	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.81;ReadPosRankSum=-0.386;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	172016756	rs113416007	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr2	172180771	rs10205459	A	G	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	172188368	rs13023973	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:65,37:0.36:102
chr2	172193808	rs3731987	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.15;ReadPosRankSum=-0.967;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	172216969	rs3731986	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:63,30:0.32:93
chr2	172305177	.	C	CT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.810;QD=1.99;ReadPosRankSum=0.119;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr2	172314644	rs200749196	A	AT	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.992;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr2	172378657	rs884409	T	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:97,27:0.22:124
chr2	172378818	rs868106	A	G	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:185,70:0.27:255
chr2	172378889	rs2356782	C	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr2	172379649	rs115283512	C	T	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr2	172379686	rs960750	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:92,51:0.36:143
chr2	172379781	rs960749	G	A	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:378,161:0.30:539
chr2	172379936	rs960748	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:81,34:0.30:115
chr2	172398311	rs7586144	T	C	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	172409790	rs143524630	TA	T	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr2	172411273	rs10455	G	A	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	172563922	rs312925	G	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:42,80:0.66:122
chr2	172564021	rs312924	A	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	172569134	rs5836347	AT	A	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-1.221;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	172582111	rs35175731	T	TG	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.68;ReadPosRankSum=1.981;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	172582281	rs139032813	A	ATTAC	681.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	172600716	rs12619041	C	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.040;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr2	172644229	rs2292813	T	C	5248.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	172650382	rs6745143	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr2	172690418	rs3736499	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	172693780	rs3765166	G	A	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:254,108:0.30:362
chr2	172693944	rs3765167	A	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	172709215	rs3770444	G	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	172712480	rs2056202	T	C	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	172725301	rs1878583	A	G	10163.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr2	172864845	rs6730085	C	A	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=-0.781;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:74,46:0.38:120
chr2	172865009	rs62183782	T	A	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.220;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.521;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:280,108:0.28:388
chr2	172926211	rs62183852	T	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr2	172944748	rs58045367	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	172966250	rs2228184	T	C	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	172967302	rs743605	C	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	173339808	rs11895564	G	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.608;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr2	173344474	rs1920979	A	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr2	173353060	rs1319059	G	A	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	173368989	.	TA	T	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.952;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr2	173427053	rs10176813	T	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr2	173428874	rs6433368	C	T	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-0.862;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:208,98:0.32:306
chr2	173435374	rs13417334	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr2	173435578	.	C	CT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=0.944;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:118,40:0.25:158
chr2	173460640	rs12693005	T	C	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.047;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:242,121:0.33:363
chr2	173600783	rs34574292	C	CG	8976.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.94;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr2	173659913	rs7585729	T	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	173662354	rs6433382	A	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=1.047;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr2	173686663	rs2258180	G	T	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.922;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:171,69:0.29:240
chr2	173686798	rs2258175	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=2.695;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr2	173793096	rs3835838	GA	G	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.431;QD=25.06;ReadPosRankSum=-1.891;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	173831934	rs16861098	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.459;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	173848200	rs59582070	C	CT	2750.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=2.216;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:87,183:0.68:270
chr2	173861105	.	T	TA	33	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.8060;HP=14;HapScore=2;MGOF=0;MMLQ=19;MQ=60.0;NF=2;NR=1;PP=33;QD=12.3333333333;SC=GATCTCAAATTAAAAAAAAAA;SbPval=0.57;Source=Platypus;TC=4;TCF=3;TCR=1;TR=3;WE=173861113;WS=173861095;set=Platypus	GT:AD:AF:DP	1/0:1,3:0.75:4
chr2	173861456	rs5010643	G	C	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	173865976	rs3214814	G	GT	8407.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.137;QD=24.87;ReadPosRankSum=-0.794;SOR=0.436;set=HC	GT:AD:AF:DP	1/1:1,337:1.00:338
chr2	173866203	rs2028934	C	T	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	174055731	rs2289399	A	G	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:66,102:0.61:168
chr2	174068513	rs11899707	G	C	6067.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	174074353	rs2289398	T	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	174074375	rs2289397	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	174074407	rs2289396	A	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr2	174086285	rs74417392	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr2	174123399	rs820008	A	G	203.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	174128513	rs3769148	C	T	7138.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr2	174131511	rs35481842	T	TAAA	237.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.61;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	174223675	rs11675433	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	174228418	rs4972555	C	T	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	174228744	rs1529887	T	C	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	174230153	rs2288993	C	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	174230983	rs35959156	G	GT	1296.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.16;SOR=1.524;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	175223296	rs4972650	T	A	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	175244756	rs2358666	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	175264627	.	C	CTT	208.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=2.206;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr2	175318387	.	C	CA	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.579;QD=6.56;ReadPosRankSum=1.479;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	175318396	rs12614979	G	A	491.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.395;MLEAC=2;MLEAF=1.000;MQ=59.93;MQRankSum=0.091;QD=20.49;ReadPosRankSum=0.131;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr2	175335076	rs2358637	G	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	175431990	rs143689509	AAGAG	A	1879.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	175436940	rs4972450	G	A	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	175439512	rs1367218	T	C	7075.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	175613059	rs3816448	A	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	175613169	rs2305414	A	C	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=0.530;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:75,37:0.33:112
chr2	175614908	rs139930312	CAA	C	2010.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.91;ReadPosRankSum=-0.673;SOR=1.184;set=HC	GT:AD:AF:DP	1/1:17,84:0.83:101
chr2	175622178	rs11327107	TG	T	812.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	175622788	rs2646164	G	A	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	175622907	rs2600687	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	175624107	rs34695580	GA	G	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.525;QD=2.98;ReadPosRankSum=0.127;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:95,40:0.30:135
chr2	175629021	rs7560774	C	A	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:225,114:0.34:339
chr2	175666656	rs2646153	G	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	175677022	rs12613075	C	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-1.232;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:79,32:0.29:111
chr2	175689342	rs149952097	C	CTA,CTATA	1757.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=80;set=Intersection	GT:AF:DP	1/2:0.26,0.60:58
chr2	175711942	rs14228	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	175712501	.	CAAAAA	C	125	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	175991969	.	G	GA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.154;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	176001093	rs143028251	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr2	176867131	rs747051	G	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr2	176964904	rs847151	G	A	2294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-2.734;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:256,134:0.34:390
chr2	178085137	rs9068	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	178120849	.	G	C	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.534;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:131,29:0.18:160
chr2	178129390	rs143406266	TGGC	T	5469.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	178301428	rs3754989	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	178326838	rs1979059	C	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.03;QD=42.94;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	178326847	rs1979058	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.18;QD=40.47;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	178358072	rs1348849	C	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	178362572	rs12468046	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	178378452	rs2364854	T	A	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	178417142	rs11694988	C	T	12579.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr2	178417225	rs11695035	C	T	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	178481818	rs10497497	G	T	8383.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr2	178482094	rs28630685	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.91;QD=31.18;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	178482780	rs61997202	C	T	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:49,112:0.70:161
chr2	178494173	rs3830637	G	GGGA	3370.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	178528703	rs13025391	C	T	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	178528728	rs35775900	C	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:56,87:0.61:143
chr2	178528789	rs13025904	G	A	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	178534110	rs2222711	G	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	178534324	rs6433687	A	G	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	178540293	rs3770016	A	G	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	178545713	rs4538242	C	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	178561947	rs2886424	G	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	178565815	rs10201180	T	C	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	178681716	rs1438059	G	C	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	178764364	rs3037901	A	AAT	247.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	178769992	rs2695096	T	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	178936373	rs1435573	T	G	7036.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr2	178936614	rs6433711	C	T	12615.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr2	178977620	rs2276622	C	G	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	178986130	rs200909090	TACAC	T	367.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.29;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	178986136	rs200763421	C	T	89.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.99;ReadPosRankSum=-1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	179203797	rs1434087	G	A	9694.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr2	179226290	rs1560871	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.16;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	179236831	rs6433724	A	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	179238507	rs7595571	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	179238841	rs10190530	A	G	318.22	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr2	179260382	rs2304340	A	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr2	179260653	rs34253857	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	179400585	rs71979618	G	GA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=1.174;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr2	179407763	rs58609542	C	CT	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=21.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.790;SOR=2.570;set=HC	GT:AD:AF:DP	0/1:108,32:0.23:140
chr2	179432185	rs12463674	A	G	5613.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:139,261:0.65:400
chr2	179440029	rs12464787	G	A	5732.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:135,270:0.67:405
chr2	179444768	rs4145333	C	G	9268.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr2	179460495	.	G	C	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=1.076;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:164,79:0.33:243
chr2	179462494	rs35833641	A	G	5447.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:146,262:0.64:408
chr2	179476465	rs67636125	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:270,135:0.33:405
chr2	179511767	rs10580462	GTA	G	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.05;ReadPosRankSum=-0.564;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	179544685	.	C	CTCT	4543.73	.	AC=1;AF=0.500;AN=2;DP=436;set=Intersection	GT:AD:AF:DP	0/1:136,219:0.62:355
chr2	179545859	rs36051007	C	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr2	179548695	rs372078760	AT	A	213.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=2.683;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr2	179554305	rs2244492	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:42,83:0.66:125
chr2	179566146	rs2251987	T	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	179585266	rs2562831	C	T	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	179600563	rs2742348	G	A	8564.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr2	179614952	rs10803917	A	G	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	179615887	rs922984	T	C	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	179615931	rs922985	C	G	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	179615994	rs922986	T	C	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	179616770	rs58651353	GA	G	680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.165;QD=8.62;ReadPosRankSum=-0.986;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:21,58:0.73:79
chr2	179618019	rs3754953	T	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	179620951	rs7585334	C	T	7514.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr2	179621477	rs6433728	C	T	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	179623758	rs2291310	C	T	8816.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr2	179623939	rs6705594	T	C	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	179629363	rs4894043	T	C	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	179629461	rs2291311	C	T	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	179632710	rs2291313	T	C	9105.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr2	179633298	rs4471922	G	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	179634376	rs72125115	GTA	G	1582.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;QD=32.97;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	179635882	rs4894047	C	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	179639297	rs3816781	C	T	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	179639725	rs201284459	G	A	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:204,111:0.35:315
chr2	179642425	rs719201	G	A	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	179643886	rs2291302	A	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	179643934	rs2291301	A	G	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	179644035	rs1552280	G	A	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	179644855	rs10497520	T	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	179647684	rs56310516	G	A	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:173,80:0.32:253
chr2	179650408	rs35813871	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-2.069;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:97,22:0.18:119
chr2	179650701	rs6715406	C	T	3353.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:48,154:0.76:202
chr2	179650954	rs6715901	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-0.581;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr2	179667090	rs3816849	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr2	179698945	rs16866554	G	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=1.509;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:66,31:0.32:97
chr2	179702268	rs1032283	A	G	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr2	179702577	rs3045731	A	AGG	181.87	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.37;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	179702610	rs2078403	C	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	179718133	rs13033688	T	A	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-1.483;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:70,40:0.36:110
chr2	179719966	rs1872203	A	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	179732636	rs35755711	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.64;ReadPosRankSum=-0.819;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	179732845	rs12988301	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:76,30:0.28:106
chr2	179732980	rs10165177	A	G	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	179737144	rs12693170	C	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	179753164	.	C	T	116.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	179753245	rs7573293	C	T	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr2	179753549	rs1873164	G	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	179770175	rs34883828	C	A	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-1.130;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:189,67:0.26:256
chr2	179783696	rs12467323	C	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr2	179809500	rs9677932	C	T	63.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	179825838	rs11303440	TG	T	1370.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	179826241	rs6725028	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	179980070	rs2044479	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	179982125	.	AAGAT	A	38	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=1;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=38;QD=33.0;SC=ATTCTTCAACAAGATAGATAA;SbPval=1.0;Source=Platypus;TC=15;TCF=13;TCR=2;TR=2;WE=179982136;WS=179982115;set=Platypus	GT:AD:AF:DP	1/0:13,2:0.13:15
chr2	179988395	rs5836671	T	TA	517.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.969;QD=12.33;ReadPosRankSum=-0.027;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr2	179989039	rs2289992	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr2	179997177	rs3214766	AT	A	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.955;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	180008334	rs34321236	T	C	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:46,123:0.73:169
chr2	180039068	rs13013868	C	T	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	180047746	rs1446673	G	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:29,67:0.70:96
chr2	180047908	rs6757681	T	C	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	180308028	rs2367796	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=1.371;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	180383498	rs4567894	C	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	180725400	rs59293459	C	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	180725481	rs259816	T	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	180810180	rs6433817	C	T	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	180810264	rs6433818	A	T	9047.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr2	180815528	rs2304858	A	T	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	180835589	rs4894140	A	G	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	180835792	rs3768837	T	A	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	180837722	rs6433820	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	180837743	.	G	GA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=1.424;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr2	180837806	rs6433821	T	A	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	180843126	rs2367990	C	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	180846743	rs3738943	G	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	182340714	rs139050637	A	ACT	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr2	182344846	rs11412304	G	GT	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.809;QD=10.80;ReadPosRankSum=1.281;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr2	182347072	rs2305588	T	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr2	182350489	rs17290693	T	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr2	182350743	rs155103	A	G	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:26,102:0.80:128
chr2	182359613	rs165419	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	182374328	rs3816521	T	A	2296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.17;ReadPosRankSum=0.062;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:38,104:0.73:142
chr2	182374534	rs1143674	A	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:79,38:0.32:117
chr2	182374553	rs2305584	A	T	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr2	182374567	rs2305583	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr2	182376546	rs1466109	T	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	182387133	rs7602504	A	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	182392143	rs56095368	G	C	2301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.801;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:47,110:0.70:157
chr2	182395345	rs1143676	G	A	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:353,147:0.29:500
chr2	182399097	rs7562325	T	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:59,34:0.37:93
chr2	182399497	rs11418738	A	ATT	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=-0.185;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr2	182399638	rs2124443	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	182399685	rs41265949	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr2	182403792	rs57234957	A	AT	6790.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=40.18;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	182403851	rs10180793	G	A	10162.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr2	182412633	rs139036113	G	GACACACACACACAC	1825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.921;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-2.160;QD=5.62;ReadPosRankSum=3.047;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:254,71:0.22:325
chr2	182413259	rs12997453	A	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.440;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr2	182413602	rs13003064	A	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:109,64:0.37:173
chr2	182521578	rs1473295	G	A	4475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.080;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-1.851;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:550,269:0.33:819
chr2	182543455	rs1801262	T	C	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:340,164:0.33:504
chr2	182794534	rs1051085	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	182928555	rs1196161	G	C	9576.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr2	183033020	.	G	GA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=1.335;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr2	183066377	rs111979949	C	CA	1334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.898;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.543;QD=12.47;ReadPosRankSum=1.292;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:22,85:0.79:107
chr2	183088584	rs3754929	G	A	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	183106758	rs2568667	T	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	183584755	rs6729801	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	183593451	rs3832045	AT	A	678.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.96;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	183593697	rs288280	C	T	6391.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	183597063	rs288282	T	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	183597318	rs825660	A	G	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	183616592	rs3098359	C	T	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	183616748	rs3115425	G	C	5447.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	183616913	rs61748254	A	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.607;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:70,22:0.24:92
chr2	183622319	rs141152570	AATAAT	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	183622547	rs288334	T	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	183627504	rs192618	A	G	5963.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	183627619	rs190830	C	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	183793383	rs9333279	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	183793398	rs9333280	A	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	183799558	rs9288088	G	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	183827018	rs2271671	G	A	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	183841691	rs144939357	GA	G	308.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=1.079;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:4,23:0.85:27
chr2	183851058	rs10185562	C	T	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	183960477	rs35941903	C	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr2	183960522	rs13399265	T	C	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr2	183988984	rs2705719	C	G	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	183989305	rs13035624	C	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	183995742	rs925803	A	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	183998366	rs34264626	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-0.549;QD=3.56;ReadPosRankSum=-1.704;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	184022015	rs3791249	G	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	184024190	rs3748884	A	G	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr2	184024511	rs34967913	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	185463815	rs147358574	C	CCT	3530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=3.094;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.966;QD=14.01;ReadPosRankSum=-0.063;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:84,168:0.67:252
chr2	185801755	rs4667002	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:60,25:0.29:85
chr2	185802363	rs12477430	A	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:90,57:0.39:147
chr2	186603605	rs35617283	A	AG	1933.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:22,71:0.76:93
chr2	186610344	rs11884004	T	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:105,44:0.30:149
chr2	186610388	rs17813736	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr2	186611566	rs6758484	C	A	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr2	186611938	rs12618129	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.547;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr2	186625645	rs71411142	TTTGA	T	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.77;ReadPosRankSum=-0.984;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	186625770	rs7562137	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.815;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr2	186627890	rs201343497	G	A	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=2.083;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,42:0.75:56
chr2	186627943	rs17228441	T	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=1.325;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:79,33:0.29:112
chr2	186629191	rs12998112	T	G	882.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr2	186629349	rs1986166	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr2	186647270	rs140906899	T	TA	227.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	186654592	rs992822	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:65,25:0.28:90
chr2	186655726	rs10931199	G	A	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	186656657	rs10173807	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:61,23:0.27:84
chr2	186656840	rs17815052	T	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=0.894;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:64,35:0.35:99
chr2	186656956	rs17229201	T	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.601;QD=3.75;ReadPosRankSum=0.779;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:158,59:0.27:217
chr2	186657089	rs17229222	C	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:61,20:0.25:81
chr2	186657317	.	T	C	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=1.035;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:112,59:0.35:171
chr2	186658056	rs60029104	G	A	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=2.698;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:66,29:0.31:95
chr2	186658438	rs10490391	C	T	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.759;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:172,55:0.24:227
chr2	186658565	rs10490392	G	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-2.121;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:55,26:0.32:81
chr2	186659359	rs2161036	G	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:71,32:0.31:103
chr2	186661567	rs12999160	G	A	4721.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:142,224:0.61:366
chr2	186661673	rs55938253	A	G	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.926;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.689;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:207,69:0.25:276
chr2	186664473	rs11686997	T	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:39,10:0.20:49
chr2	186664963	rs10931200	C	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:106,44:0.29:150
chr2	186665432	rs36004074	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,22:0.26:84
chr2	186665824	rs11695215	A	G	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.467;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:206,82:0.28:288
chr2	186667121	rs7605884	T	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=0.643;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:60,34:0.36:94
chr2	186668935	rs13003744	A	G	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.000;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:30,42:0.58:72
chr2	186670104	rs7576532	A	C	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	186670780	rs16827154	T	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr2	186670979	rs4666689	T	C	5994.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	186671357	rs17826534	G	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr2	186671912	rs1862066	G	A	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=1.460;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:124,55:0.31:179
chr2	186672527	rs72900086	T	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:90,53:0.37:143
chr2	186672897	rs4666690	A	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr2	186678241	rs34138386	A	AT	31.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	186678887	rs2161035	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr2	186680041	rs2287606	G	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=2.264;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr2	186697688	rs34199041	C	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=0.742;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr2	186697876	rs1468999	A	G	8367.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr2	187364811	rs4144786	G	A	81.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	187364878	rs4144785	A	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr2	187370673	rs11690758	G	C	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.280;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:156,74:0.32:230
chr2	187455278	rs9333287	C	T	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	187487160	rs9333288	G	A	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	187490371	rs2197787	T	G	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=40.04;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	187490389	rs28633327	G	T	1414.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=42.87;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	187498254	rs4667107	T	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.80;ReadPosRankSum=-1.282;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	187501682	rs56136540	G	A	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=2.070;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	187505486	rs3816375	A	G	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	187529823	rs35994921	AT	A,ATT	1019.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.757;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.663;QD=6.22;ReadPosRankSum=0.109;SOR=0.836;set=HC	GT:AD:AF:DP	1/2:38,67,59:0.41,0.36:164
chr2	187532010	rs41265951	G	T	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:48,93:0.66:141
chr2	187532417	rs2230616	G	A	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr2	187540732	rs3213964	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.467;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr2	187541810	rs2887831	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	187558960	rs2276562	G	A	7600.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:203,361:0.64:564
chr2	187559029	.	A	ACAGCAG	1970.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DP=709;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=-3.894;QD=3.33;ReadPosRankSum=2.055;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:435,157:0.27:592
chr2	187559047	rs144403657	G	GCAA	9822.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=803;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=61.74;MQRankSum=1.781;QD=13.24;ReadPosRankSum=5.236;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:274,468:0.63:742
chr2	187559222	rs6705757	T	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr2	187611748	rs2247924	G	A	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	187698037	rs7609183	G	A	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	187698751	rs7559533	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:96,57:0.37:153
chr2	188216807	rs858745	T	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	188243633	rs3771084	A	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	188245640	rs1511877	G	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	188250301	rs698577	T	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	188348696	rs144825443	TAAAC	T	337.87	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	189448896	rs2048138	A	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	189849773	rs3106796	A	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	189855674	rs2203601	T	A	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	189859434	rs72425404	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.049;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr2	189862203	rs3134654	C	T	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	189866199	rs2271682	T	A	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	189867205	rs3106801	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	189875421	rs1516446	T	G	8351.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr2	189899541	rs4666770	T	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	189899572	rs7420715	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	189901295	rs12693526	G	A	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	189904203	rs10208525	A	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:46,72:0.61:118
chr2	189904233	rs10197596	T	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:46,73:0.61:119
chr2	189907937	rs6434312	A	G	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	189910066	rs111268949	ATG	A	131.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	189918337	rs6750027	T	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	189918787	rs6738371	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr2	189923104	rs7556733	A	G	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	189923434	rs12989558	A	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr2	189923630	rs5837121	AT	A	3553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.996;QD=12.25;ReadPosRankSum=-0.609;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:44,246:0.85:290
chr2	189925313	rs6414121	G	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.35;ReadPosRankSum=1.699;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	189925548	rs6414122	T	A	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	189926229	rs72904404	A	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=1.428;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:45,42:0.48:87
chr2	189927506	rs7424947	C	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	189928834	rs74497802	TG	T	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	189932831	rs2229495	T	C	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	189933686	rs72904419	G	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	189936687	rs6434317	T	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=1.008;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr2	189940004	rs145791814	A	G	97.85	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	189943121	rs5837122	GA	G	166.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=15.16;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	189945538	rs55929725	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	189945654	rs57206096	T	G	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,54:0.60:90
chr2	189948549	rs55711740	T	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	189948651	rs55963648	G	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr2	189948696	rs56310996	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr2	189949759	rs58532741	C	T	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr2	189949786	rs61311233	TG	AT	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;JOINED;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr2	189950069	rs60860012	G	A	367.98	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr2	189950556	rs60355473	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr2	189953508	rs58106884	C	T	2069.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:82,104:0.56:186
chr2	189953551	rs58243388	G	A	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr2	189962199	rs72906358	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	189964747	rs55977069	G	T	156.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.42;ReadPosRankSum=-0.549;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	189964891	rs56380683	A	G	1800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=0.253;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:39,85:0.69:124
chr2	189964970	rs55765720	T	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr2	189965017	rs55905390	G	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	189968808	rs147860045	TA	T	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	189974958	rs4128539	G	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	189997838	rs62182417	G	A	142.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	190313396	rs6738193	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	190313890	rs17271036	C	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr2	190319966	rs5837143	C	CA	104.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr2	190319990	rs1224958	A	G	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=27.22;SOR=1.467;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	190322196	rs10497700	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.25;ReadPosRankSum=0.328;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	190323530	rs1157910	A	G	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=1.437;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:174,71:0.29:245
chr2	190327076	rs2304703	C	T	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	190327126	rs2304702	C	G	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	190327400	rs2304701	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr2	190430177	rs2304704	A	G	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:183,87:0.32:270
chr2	190437482	rs35134106	C	CA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.90;ReadPosRankSum=0.296;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	190443304	rs1439815	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:74,28:0.27:102
chr2	190444630	rs1439816	C	G	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	190445076	rs4287798	T	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-1.184;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	190445194	rs11568351	G	C	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:102,182:0.64:284
chr2	190445284	rs13008848	C	G	4112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=5.262;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=12.93;ReadPosRankSum=1.859;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:118,200:0.63:318
chr2	190448047	rs987028	T	C	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr2	190448550	.	TAT	CAC	2041	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=1;MGOF=23;MMLQ=26;MQ=54.73;NF=11;NR=38;PP=2041;QD=42.7442423441;SC=CACACACACATATACACAGTA;SbPval=0.53;Source=Platypus;TC=58;TCF=13;TCR=45;TR=49;WE=190448560;WS=190448538;set=Platypus	GT:AD:AF:DP	1/1:9,49:0.84:58
chr2	190531426	rs1437880	G	A	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	190570001	rs11319823	TA	T	377.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	190593311	rs1225087	C	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	190595258	rs1225090	G	T	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	190602513	rs1225099	T	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	190603201	rs56352098	T	TA	198.19	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:2,13:0.87:15
chr2	190611084	rs13002216	T	C	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	190611414	rs2254166	T	C	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	190611459	rs2254167	A	G	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	190617643	rs2243876	A	G	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	190636411	rs6942	C	G	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	190640475	rs3816196	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	190643257	rs7591929	G	A	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	190647108	rs10168387	T	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	190717517	.	G	GA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.118;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	191159232	rs188339	A	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	191161622	rs1058180	T	C	11094.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,440:1.00:440
chr2	191175639	rs36074132	GT	G	1250.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	191184475	rs291466	A	G	19072.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,733:1.00:733
chr2	191184524	rs3749022	C	T	9336.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr2	191235901	rs1882891	A	C	3634.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:58,168:0.74:226
chr2	191334459	rs145257711	A	ATTTTTAT	1224.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.11;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	191354658	rs59123011	C	CCT	4362.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	191364708	rs72907168	G	A	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	191373775	rs6707244	C	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	191375375	rs6712426	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	191379268	rs4586658	G	A	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	191390126	rs10931458	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	191399433	rs12693579	T	C	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	191523862	.	C	CT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.428;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr2	191537793	.	G	GT	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.727;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr2	191545606	rs13382951	C	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.81;ReadPosRankSum=-1.217;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	191552121	.	CAAA	C	668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-1.495;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:64,42:0.40:106
chr2	191552148	rs6716415	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr2	191765206	rs3771313	T	C	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	191775183	rs72907244	A	G	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.41;ReadPosRankSum=1.105;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	191777768	rs11363248	AT	A	82.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	191848312	rs12477076	T	C	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	191862901	rs2066805	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	191896300	rs114200651	T	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:96,44:0.31:140
chr2	191896354	rs3024898	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr2	191922307	rs56816363	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.70;ReadPosRankSum=1.104;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	191922841	rs3024866	G	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:55,90:0.62:145
chr2	191934596	.	T	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.689;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=6.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.822;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr2	191996518	rs1551443	T	C	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	192160839	rs4853574	A	T	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	192160875	rs4853575	C	T	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	192161058	rs11397643	G	GT	372.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=2.346;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr2	192161103	rs10622945	A	ATTCT	143	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	192247836	rs4641883	C	T	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	192250543	rs13000398	A	G	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	192250568	rs13026888	T	C	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	192250726	rs13018796	G	A	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr2	192279327	rs2271767	T	C	8765.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	192701393	rs10167187	A	G	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-2.112;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:182,66:0.27:248
chr2	192701407	rs61735649	G	C	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.373;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:166,54:0.25:220
chr2	192701453	rs114763644	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=2.739;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr2	192711162	rs4471838	A	C	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	192711442	rs61735648	G	A	6491.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:183,310:0.63:493
chr2	192820898	rs7606017	T	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	193056737	rs3768702	C	A	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=1.585;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:43,48:0.53:91
chr2	196545817	rs16838394	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr2	196582816	rs842736	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	196602582	rs75708451	A	AAAT	579.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr2	196636662	rs1145939	C	G	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	196673533	rs13411834	A	G	7483.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	196709683	rs16840768	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr2	196720466	rs16841010	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr2	196720705	rs16841018	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr2	196749504	rs60214909	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.166;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr2	196756535	rs79407338	GAA	G,GA	2120.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=148;set=Intersection	GT:AF:DP	1/2:0.34,0.61:119
chr2	196771780	rs6710775	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	196791276	rs1489802	T	G	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr2	196825402	rs6719500	T	C	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.048;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=4.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.398;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:195,51:0.21:246
chr2	196851911	rs10931715	G	A	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=-0.775;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:19,35:0.65:54
chr2	196866420	rs6434811	C	T	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	196891449	rs1072600	T	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	196912041	rs370310893	T	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr2	196912067	rs4850381	A	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	196915991	rs10174065	A	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	196933188	rs13028754	T	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	196935811	rs12693777	T	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	197004439	rs1054537	A	G	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	197008529	rs1568368	C	T	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	197010823	rs2271888	C	T	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	197021141	rs6712829	G	A	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	197021276	rs10931726	T	C	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	197021372	rs12478353	T	A	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	197065889	rs3795921	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	197065964	rs3820908	C	A	3042.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:58,143:0.71:201
chr2	197066175	rs4566380	T	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=1.214;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr2	197080554	rs9288259	T	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:68,19:0.22:87
chr2	197081843	rs1869793	T	C	2075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.576;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:263,131:0.33:394
chr2	197084982	rs2305568	T	C	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	197092767	rs3748873	A	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.47;ReadPosRankSum=-1.402;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr2	197093005	rs3748874	A	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=1.148;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr2	197106759	rs2045277	T	C	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:57,103:0.64:160
chr2	197118729	rs4850690	C	T	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	197138653	rs72923327	GC	AA	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;JOINED;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr2	197171104	rs6729640	G	A	266.18	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr2	197171175	rs4241189	C	T	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.54;ReadPosRankSum=-1.011;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:15,44:0.75:59
chr2	197171183	rs12468199	C	T	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.58;ReadPosRankSum=1.252;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:19,43:0.69:62
chr2	197172816	rs2305567	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr2	197184321	rs1531111	C	T	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:63,115:0.65:178
chr2	197208531	rs6716054	T	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.765;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:83,26:0.24:109
chr2	197504545	rs1879128	C	G	4079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=-0.729;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:72,187:0.72:259
chr2	197530414	rs80092902	A	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-2.700;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:119,32:0.21:151
chr2	197531518	rs376590781	CA	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-2.367;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:172,40:0.19:212
chr2	197534692	rs7590083	C	T	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	197541296	rs17271281	G	A	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-1.016;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:110,52:0.32:162
chr2	197577448	rs80183667	T	C	1643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=2.368;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:136,94:0.41:230
chr2	197584504	rs2680970	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	197593787	rs2460436	C	T	173.41	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr2	197593850	rs6745245	A	G	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr2	197594203	rs2577580	G	C	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:31,84:0.73:115
chr2	197595762	rs2680967	G	A	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:58,109:0.65:167
chr2	197629320	rs61741430	A	G	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:213,96:0.31:309
chr2	197645397	rs76804254	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:177,77:0.30:254
chr2	197744755	rs77319831	T	C	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:30,87:0.74:117
chr2	197758148	rs332299	C	T	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	197762941	.	C	CA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.859;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr2	197777589	rs12693800	C	T	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	197854233	rs144034091	T	TAC	505.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	197863214	rs1966703	C	T	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	197863851	rs4850742	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	197864996	rs6434897	A	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	197866470	rs12478175	T	A	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	197872574	rs61752170	C	T	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=1.149;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:277,113:0.29:390
chr2	197872727	rs57048274	T	TTCTC	1322.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	197953372	rs146161383	TAAGTC	T	3343.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	197954780	rs4300850	A	G	7448.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	197986048	rs2697270	T	C	6035.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	197989945	rs2579395	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	197990909	rs2918628	G	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	198001443	rs2579387	C	T	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	198011904	rs2249470	G	A	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr2	198175297	rs10931780	G	C	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	198257652	rs11380582	T	TA	545.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=1.230;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:3,30:0.91:33
chr2	198257795	rs4685	T	C	6905.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.46;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	198265173	rs788017	T	A	1075.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.95;ReadPosRankSum=-1.169;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:1,48:0.98:49
chr2	198265526	rs788018	A	G	7203.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	198266943	rs788019	C	T	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	198267770	rs3217350	G	GAA	1923.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;QD=35.62;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	198281743	rs699318	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	198283305	rs788023	T	C	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	198324934	rs56933545	C	CT	94.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.341;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	198355135	rs148517124	T	TTG	1290.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.79;QD=37.96;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	198362018	rs8539	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	198365043	rs1116734	C	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	198380635	rs75909202	C	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.86;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	198498595	rs139323535	C	T	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=2.886;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:320,124:0.28:444
chr2	198508951	rs10497806	G	A	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	198511086	rs16866970	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	198643529	.	TAC	T	178.73	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:55,13:0.19:68
chr2	198643631	rs700655	G	A	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.33;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	198669754	rs770659	G	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	198669871	rs770658	G	C	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	198950240	rs1064213	G	A	7252.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	200173684	rs10153730	T	G	7500.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	200245245	rs1348813	C	G	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	200298313	rs7596597	A	G	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	200323452	rs114693875	A	G	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-1.155;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:290,96:0.25:386
chr2	200625581	rs2346586	T	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:102,53:0.34:155
chr2	200677625	rs2030653	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	200684249	.	T	TA	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=2.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.974;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:84,52:0.38:136
chr2	200710706	rs769960	T	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	200800493	rs6435039	A	G	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.34;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	200820505	rs281766	T	G	3871.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.908;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=0.431;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:1,149:0.99:150
chr2	200823868	rs34998043	A	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	200873144	rs113489455	AATACAAAAAAAACTTG	A	10590.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	201253956	rs842823	A	G	3026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-1.103;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:70,145:0.67:215
chr2	201254049	rs3820881	G	C	8212.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr2	201254171	rs4674015	A	G	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	201277181	rs6706953	T	C	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:28,83:0.75:111
chr2	201280996	.	CAA	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.53;ReadPosRankSum=-1.068;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	201337806	rs11402412	G	GA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.155;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr2	201354935	rs3795969	C	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:208,98:0.32:306
chr2	201371768	rs3739116	G	T	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	201397647	rs842939	A	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	201399917	rs10497848	G	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	201400685	rs10497849	A	G	42.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	201436555	rs17448235	A	G	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=0.630;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:25,47:0.65:72
chr2	201437048	rs17532665	A	G	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,69:0.62:112
chr2	201437328	rs35987478	C	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.621;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:117,25:0.18:142
chr2	201437334	rs12052989	T	C	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	201451006	rs4470327	C	T	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr2	201464295	rs10179964	T	C	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	201466954	rs2248130	C	G	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:61,116:0.66:177
chr2	201470233	rs200778985	ATTT	A	372.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;QD=28.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	201473674	rs2470902	G	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	201474179	rs17593811	C	T	1877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.038;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:56,91:0.62:147
chr2	201474237	rs4672858	A	G	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.099;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	201485572	rs4672865	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr2	201485649	rs4672866	T	G	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	201488758	rs2348021	A	G	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.397;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=0.317;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:84,41:0.33:125
chr2	201515939	rs868810	T	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	201524908	rs112795565	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	201534136	rs2715907	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	201677454	rs2270281	C	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.195;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr2	201677791	rs2270280	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr2	201683695	rs2881880	T	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:110,55:0.33:165
chr2	201686122	rs3815501	T	C	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	201686666	rs6705053	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	201719258	rs5837758	CA	C	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-2.028;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:8,35:0.81:43
chr2	201719916	rs72927093	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr2	201721782	rs41271451	C	T	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:9,48:0.84:57
chr2	201722827	rs17383109	C	A	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,44:0.80:55
chr2	201778717	rs201460825	T	TA	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.697;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	201881948	.	G	GT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.941;QD=0.92;ReadPosRankSum=1.117;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:75,21:0.22:96
chr2	202025131	rs2518142	G	A	7452.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr2	202025621	rs1594	A	G	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:172,94:0.35:266
chr2	202050677	rs3900115	A	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-1.466;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:108,30:0.22:138
chr2	202070735	rs6712872	A	T	185.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	202082459	rs13006529	T	A	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:227,100:0.31:327
chr2	202122995	rs3769823	A	G	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr2	202131587	rs2293554	T	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	202139739	.	CT	C	88.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.817;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	202149696	rs1045487	G	A	8075.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:178,389:0.69:567
chr2	202151163	rs3769818	A	G	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:85,220:0.72:305
chr2	202151781	rs1045494	T	C	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr2	202152243	rs34461625	G	GAT	3133.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:71,94:0.57:165
chr2	202153225	rs700635	C	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=-1.099;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	202211443	rs1406122	C	T	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:46,111:0.71:157
chr2	202215409	rs71022364	C	CAAAACAAAACAAAACAA	559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.93;ReadPosRankSum=-1.022;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr2	202215492	rs13014235	C	G	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.789;QD=12.79;ReadPosRankSum=3.208;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:21,37:0.64:58
chr2	202245244	rs3795966	A	G	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr2	202245944	rs3832088	TAA	T	1146.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr2	202245955	rs72937131	A	G	1155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.89;ReadPosRankSum=0.735;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr2	202248788	rs7579617	T	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr2	202248979	rs7579853	T	A	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-0.900;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:23,67:0.74:90
chr2	202252539	rs2244438	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:97,48:0.33:145
chr2	202252856	rs2540330	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr2	202252873	rs2540331	A	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.77;ReadPosRankSum=-1.254;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	202257930	rs3815515	C	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	202260049	rs2256584	G	A	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	202264156	rs13022344	C	T	4342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=0.091;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:99,206:0.68:305
chr2	202264316	rs6732993	C	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.05;ReadPosRankSum=1.300;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	202284236	rs113582398	C	CTTAAT	5393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.674;QD=28.09;ReadPosRankSum=2.426;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:60,132:0.69:192
chr2	202285100	rs4507084	A	G	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:20,73:0.78:93
chr2	202337730	rs1019299	A	G	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-1.738;QD=9.30;ReadPosRankSum=0.335;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:52,52:0.50:104
chr2	202342402	rs12990557	G	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr2	202342802	rs2243791	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr2	202344179	rs34469362	GT	G	452.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	202352649	rs2714481	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr2	202357949	rs2714482	A	C	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	202468136	rs10205247	T	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.29;ReadPosRankSum=-0.189;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	202469361	rs12474206	C	T	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	202469472	rs7572583	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	202499683	rs56162425	C	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=0.378;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr2	202501448	rs1208081	T	C	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	202523347	rs2597900	C	T	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:42,91:0.68:133
chr2	202546113	rs1208073	T	C	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	202549626	rs1812933	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	202549666	rs1812932	A	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=0.430;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr2	202555132	rs2287050	T	C	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	202557702	rs6725443	C	T	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	202566741	rs7603563	T	C	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	202569992	rs3219171	A	T	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	202570232	rs3219170	A	G	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	202574825	rs1210940	C	T	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	202575821	rs3219168	G	A	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	202575907	rs2882231	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	202580370	rs3219167	G	A	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:41,91:0.69:132
chr2	202587706	rs144704088	T	TA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=-0.618;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	202589295	.	T	C	227.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	202591157	rs143317076	C	T	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=0.720;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:103,51:0.33:154
chr2	202593280	rs3219161	G	A	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.328;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:135,49:0.27:184
chr2	202598113	rs2276615	C	T	1702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.20;ReadPosRankSum=-0.376;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:20,79:0.80:99
chr2	202606639	rs3731703	G	A	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:48,79:0.62:127
chr2	202608877	rs4673207	C	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	202614632	rs41308828	T	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr2	202625615	rs3219156	C	T	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	202633725	rs113884822	TA	T	56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.319;QD=7.00;ReadPosRankSum=0.992;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	202688293	rs4675229	A	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	202698422	rs66588345	ATCT	A	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.596;QD=1.16;ReadPosRankSum=-0.943;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr2	202712095	rs917958	A	C	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	202741064	rs2072504	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	202741256	rs4675235	A	T	6893.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	202741269	rs4675236	G	A	6861.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	202899957	rs34908164	G	A	11895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=-0.373;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:171,536:0.76:707
chr2	202939654	rs10221698	T	C	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	202955454	rs1568535	G	C	9121.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr2	202962310	rs11288166	CT	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.971;QD=3.54;ReadPosRankSum=0.681;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr2	202964380	rs2882486	G	A	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.395;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:34,55:0.62:89
chr2	202964528	rs2350722	T	C	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:56,88:0.61:144
chr2	202964986	rs6755174	C	A	2031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=-0.821;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:25,93:0.79:118
chr2	202965222	rs6726731	A	G	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.08;ReadPosRankSum=0.371;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,42:0.70:60
chr2	202974360	rs12615065	T	G	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.756;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:154,69:0.31:223
chr2	202989742	rs56243480	G	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-1.027;QD=11.44;ReadPosRankSum=0.620;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	202990653	rs56293728	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-1.293;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	203000717	rs7578906	A	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.935;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr2	203000729	rs56806886	A	T	242.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=2.074;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:56,22:0.28:78
chr2	203000730	rs9679591	A	T	2356.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.10;ReadPosRankSum=1.731;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,79:0.98:81
chr2	203000810	rs35537724	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr2	203003066	rs3043926	G	GGTGT	2792.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	203003085	rs16838883	T	C	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.176;QD=4.97;ReadPosRankSum=0.179;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:88,36:0.29:124
chr2	203029951	rs7582695	T	A	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	203051886	rs6722588	C	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	203072693	rs55694983	A	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=1.396;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	203079307	rs3769817	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	203139738	rs11397579	A	AC	324.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	203384776	rs11390605	C	CT	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.286;QD=3.82;ReadPosRankSum=0.531;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:70,35:0.33:105
chr2	203560847	rs113200356	T	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr2	203621800	rs16839308	A	C	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	203650558	rs145836386	TA	T	80.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	203651278	rs55689177	CA	C	342.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr2	203651475	rs57934594	A	AT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.246;QD=3.27;ReadPosRankSum=1.431;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr2	203661779	rs6704822	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.45;QD=25.07;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	203690387	rs1344959	G	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.13;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	203693559	rs4675296	C	G	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	203748544	rs34788166	A	AT,ATT	1244.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.000;QD=20.08;ReadPosRankSum=0.049;SOR=1.263;set=HC	GT:AD:AF:DP	1/2:3,44,15:0.71,0.24:62
chr2	203748594	rs10196719	A	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	203749392	rs3050865	C	CTTT	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	203820275	rs3731695	T	C	197.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	203880992	rs2351524	T	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.52;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	203921270	rs4673241	A	G	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	203991488	rs6725469	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr2	203996635	rs9677190	T	G	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.983;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr2	203996870	rs6748898	A	G	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	204002809	rs10180815	A	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	204036545	.	C	CT	26	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.8383;HP=14;HapScore=2;MGOF=191;MMLQ=27;MQ=60.0;NF=1;NR=2;PP=26;QD=10.0;SC=CCTGTTGTACCTTTTTTTTTT;SbPval=0.35;Source=Platypus;TC=5;TCF=3;TCR=2;TR=3;WE=204036553;WS=204036535;set=Platypus	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	204054834	rs62182253	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr2	204054858	.	CA	C	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=1.208;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr2	204054882	rs148174619	TACACACACACACACACACAC	T,TACACACACACACACAC	1982.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;QD=34.78;SOR=2.208;set=HC	GT:AD:AF:DP	1/2:0,45,12:0.79,0.21:57
chr2	204062061	rs4675323	A	G	11720.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr2	204090887	rs2351773	C	G	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	204110748	rs56317341	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=-1.368;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	204111394	rs13015873	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	204111398	rs10586509	GTTAA	G	568.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	204111443	rs6435176	A	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr2	204111705	rs6751894	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=25.90;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	204116660	rs3731694	A	T	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,66:0.67:99
chr2	204116690	rs2043449	C	T	2594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=0.273;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:65,126:0.66:191
chr2	204116887	rs2351771	T	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr2	204154552	rs1048013	C	T	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:52,109:0.68:161
chr2	204154686	rs10170454	A	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	204193388	.	A	AC	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.090;QD=2.38;ReadPosRankSum=-0.892;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:81,19:0.19:100
chr2	204206977	rs4675333	C	T	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	204241021	rs140298539	A	G	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	204244907	rs371242683	TG	T	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=1.603;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	204247003	rs148326389	T	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,10:0.20:49
chr2	204261723	rs3731652	G	C	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	204261794	.	T	TA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.412;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr2	204302986	rs150182889	A	G	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:112,50:0.31:162
chr2	204305093	rs3814365	T	C	3711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=0.116;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:73,172:0.70:245
chr2	204322298	rs2469953	T	C	5624.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.35;ReadPosRankSum=0.527;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:2,229:0.99:231
chr2	204326540	rs192427006	A	T	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.580;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:91,38:0.29:129
chr2	204354385	rs113379995	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:48,12:0.20:60
chr2	204355822	rs2469962	G	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	204732850	rs231776	A	G	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	204822670	rs5837889	A	AT	884.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.240;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.572;QD=12.12;ReadPosRankSum=-0.623;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:16,57:0.78:73
chr2	204824178	rs146016344	AGT	A	1100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.66;ReadPosRankSum=-2.027;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:15,44:0.75:59
chr2	204824283	rs10172036	T	G	3119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=1.980;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:56,141:0.72:197
chr2	205912210	rs7563474	C	A	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	205912403	rs1510765	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	205969023	rs2289024	A	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	205969220	rs2289025	G	A	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	205978113	rs368750104	CA	C	1791.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.15;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	205978114	.	A	G	492	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=4;HapScore=4;MGOF=5;MMLQ=23;MQ=60.0;NF=17;NR=8;PP=492;QD=21.0708485019;SC=AATCCTGAGCAGGGGTGTGTG;SbPval=0.48;Source=Platypus;TC=27;TCF=19;TCR=8;TR=25;WE=205978130;WS=205978104;set=Platypus	GT:AD:AF:DP	1/1:2,25:0.93:27
chr2	205978118	.	GTGTGT	G,GGT	1576.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.46;SOR=1.670;set=HC	GT:AD:AF:DP	1/2:0,10,31:0.24,0.76:41
chr2	205986321	rs2289023	A	G	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	206041366	rs11329569	TA	T	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.228;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr2	206050355	rs62172732	A	G	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	206364737	rs10197347	T	C	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	206418032	rs6730102	G	A	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	206481612	.	TGAGA	T,TGA	1844.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=32.94;SOR=1.412;set=HC	GT:AD:AF:DP	1/2:0,9,47:0.16,0.84:56
chr2	206562250	rs849558	C	T	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	206581033	rs849541	G	A	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	206592695	rs849526	T	C	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:180,99:0.35:279
chr2	206608039	rs849568	T	C	8408.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	206614646	rs10932123	T	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=-0.968;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr2	206630073	rs35659576	A	AAC	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:50,13:0.21:63
chr2	206874339	rs817991	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,30:0.39:77
chr2	206911191	rs34828561	C	CA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.428;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr2	206911228	rs2909111	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.244;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr2	206921451	rs818009	G	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:181,70:0.28:251
chr2	206995010	rs4147725	A	G	1411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.169;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=0.078;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:30,64:0.68:94
chr2	207003438	rs4147729	TA	T	204.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	207006676	rs1801318	T	C	5204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-2.065;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:108,244:0.69:352
chr2	207006825	rs4147718	C	A	1779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.487;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=1.340;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:34,80:0.70:114
chr2	207008675	rs35409448	C	CT	4547.73	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:83,132:0.61:215
chr2	207008763	rs1127566	C	A	5087.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:128,244:0.66:372
chr2	207023595	rs4147709	C	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	207023620	rs4147708	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	207024886	rs113729178	G	GC	428.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;MQRankSum=0.596;QD=23.79;ReadPosRankSum=-1.263;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr2	207025444	rs11689362	T	C	7580.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:166,362:0.69:528
chr2	207027407	rs35430253	C	CT	1120.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr2	207041053	rs3732083	T	C	2152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=1.878;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:66,98:0.60:164
chr2	207041441	rs3732082	G	A	3103.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:66,149:0.69:215
chr2	207171311	rs192597586	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:163,49:0.23:212
chr2	207172627	rs7582864	A	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=1.284;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr2	207174316	rs3732084	T	C	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.347;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:208,80:0.28:288
chr2	207345826	rs3213811	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-1.770;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	207429633	rs111404856	T	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	207472606	rs5838036	G	GT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.073;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	207472683	rs78458117	C	CTA	1077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=0.983;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:76,31:0.29:107
chr2	207472814	.	G	A	357.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr2	207527840	rs2115591	G	T	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:71,154:0.68:225
chr2	207559644	.	G	GAGA	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=61.11;MQRankSum=-1.191;QD=1.21;ReadPosRankSum=0.159;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:77,27:0.26:104
chr2	207559647	rs55963515	A	AAG	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=61.21;MQRankSum=2.355;QD=0.76;ReadPosRankSum=-0.965;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr2	207564996	rs16838601	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr2	207569578	.	C	G	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DP=314;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=2.058;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:227,85:0.27:312
chr2	207569715	rs16838626	T	C	2087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=-0.599;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:30,98:0.77:128
chr2	207569803	rs16838630	A	C	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	207570705	rs16838632	A	G	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=-0.736;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr2	207572341	rs16838641	T	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr2	207583169	rs16838693	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:15,56:0.79:71
chr2	207611230	rs2302922	T	G	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:17,68:0.80:85
chr2	207613690	rs56943283	G	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr2	207613980	rs13427620	G	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr2	207615857	rs61258471	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr2	207619779	rs59358632	A	G	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:43,116:0.73:159
chr2	207620330	rs16838820	T	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	207621759	rs1990849	A	G	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	207629904	rs3828294	G	A	4047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.876;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=2.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=0.811;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:90,192:0.68:282
chr2	207630093	rs16838839	C	A	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:42,85:0.67:127
chr2	207631461	rs3762568	G	A	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:60,120:0.67:180
chr2	207638894	rs73985719	A	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	207653770	rs57475447	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	207814273	rs75295922	C	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr2	207820276	rs13420911	G	A	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.644;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:104,46:0.31:150
chr2	207824384	rs11903403	T	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:84,48:0.36:132
chr2	207824548	rs1453168	G	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=1.339;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr2	207825656	rs13397039	A	T	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.862;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.610;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:241,87:0.27:328
chr2	207833848	rs7582092	A	G	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.059;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=-0.641;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:55,36:0.40:91
chr2	207833983	rs7582305	A	G	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.738;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:100,47:0.32:147
chr2	207946141	rs2287507	A	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	207946164	rs2287506	T	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	207974818	rs2244923	C	T	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:80,126:0.61:206
chr2	207988613	rs2700166	C	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	207998800	rs2284934	C	T	12586.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,514:1.00:514
chr2	207998878	rs35538720	A	ATTTT	2998.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=30.29;ReadPosRankSum=-1.156;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:2,97:0.98:99
chr2	207999021	rs2284933	G	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	208030132	rs144828019	G	A	9369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.393;QD=13.64;ReadPosRankSum=-0.589;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:233,454:0.66:687
chr2	208031796	rs2037893	C	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.503;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr2	208031992	rs1269424	T	A	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	208432346	rs3730276	A	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr2	208442095	rs2709387	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr2	208447632	.	AAC	A	971.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.199;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:58,59:0.50:117
chr2	208447642	.	A	ATAT	2690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.02;ReadPosRankSum=1.574;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:42,86:0.67:128
chr2	208477852	rs2551949	G	A	2688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.077;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:452,178:0.28:630
chr2	208477956	rs2709416	C	T	1574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.139;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:272,106:0.28:378
chr2	208489101	rs4234080	C	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.918;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr2	208591523	rs77591925	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.772;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	208611699	.	CA	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.096;QD=1.71;ReadPosRankSum=-1.427;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr2	208633413	rs4675711	T	C	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr2	208693261	rs720632	C	G	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	208693307	rs720631	T	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	208717440	rs10932211	A	G	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	208811097	rs10932215	C	T	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	208811284	rs10932216	C	T	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr2	208841964	rs4441448	A	G	6939.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	208986385	rs2305429	A	G	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	208986637	rs2305430	T	C	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	208989037	rs2242074	A	G	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:62,122:0.66:184
chr2	209007559	rs796287	T	G	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	209010558	rs2854723	A	G	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:31,77:0.71:108
chr2	209010891	rs2289917	G	A	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:61,121:0.66:182
chr2	209030330	rs34111482	G	GT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.431;QD=5.64;ReadPosRankSum=-0.657;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	209030572	rs6721025	A	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	209033097	rs13414543	A	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr2	209033138	rs7589065	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.905;QD=3.87;ReadPosRankSum=0.723;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr2	209033173	rs7562540	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	209035485	rs6435420	T	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	209035658	rs6748431	C	T	9173.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr2	209035849	rs4292037	A	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	209036605	rs10932244	T	C	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=26.03;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	209036712	rs10804166	T	C	7378.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	209036778	rs6435421	A	G	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	209045657	rs10208685	T	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr2	209046162	rs6435425	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.18;ReadPosRankSum=1.309;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	209046162	.	GTA	ATG	90	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=1;NR=3;PP=90;QD=35.8669687156;SC=AATAAAATTGGTATGATTGTT;SbPval=0.46;Source=Platypus;TC=7;TCF=1;TCR=6;TR=4;WE=209046172;WS=209046152;set=Platypus	GT:AD:AF:DP	1/0:3,4:0.57:7
chr2	209046164	rs6435426	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.53;ReadPosRankSum=0.812;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	209049840	rs10804167	C	T	3605.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.553;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.529;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=1.162;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:1,141:0.99:142
chr2	209101905	rs57383668	GA	G	1210.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	209138946	rs6705163	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	209163556	rs7569723	C	T	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	209168853	rs893256	C	T	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	209176807	rs12624141	T	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	209184844	rs934712	A	G	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	209184980	rs10932258	G	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	209184999	rs10932259	C	T	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	209189912	rs893255	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	209190330	rs2363468	T	C	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	209190519	rs893254	A	T	11629.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr2	209190528	rs893253	C	G	7744.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=0.713;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:2,300:0.99:302
chr2	209191082	rs1529979	C	A	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	209191099	rs1529978	T	C	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	209194696	rs1437414	G	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	209195099	rs1866045	G	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	209195133	rs12694109	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	209195491	.	G	GAGA	131	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=2;MGOF=4;MMLQ=27;MQ=61.34;NF=0;NR=4;PP=131;QD=40.5;SC=TTTTCCTGAGGAGGTTTCCTA;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=4;WE=209195499;WS=209195481;set=Platypus	GT:AD:AF:DP	1/1:2,4:0.67:6
chr2	209199945	rs2363469	A	G	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	209201054	rs6744236	T	C	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	209201739	rs7596571	T	C	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	209203122	rs4675756	C	G	92.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	209204714	rs2289171	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:77,27:0.26:104
chr2	209209827	rs2304544	G	A	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	209209997	rs2043718	C	T	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	209212707	rs2304545	G	A	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	209214770	rs2118297	A	G	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	209215448	rs994696	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	209215586	rs994697	A	G	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	209219190	rs6435453	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	209220157	rs10208191	G	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	209224874	rs11357589	CA	C	2305.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	209293168	rs962595	C	T	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	209315573	rs1370371	G	A	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	209345944	.	C	CT	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.213;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:77,32:0.29:109
chr2	210517785	rs2254169	C	T	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.64;SOR=2.774;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	210517915	rs2271252	T	C	7254.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:132,347:0.72:479
chr2	210557542	rs741007	G	A	3775.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:83,173:0.68:256
chr2	210560189	rs17745550	A	G	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:74,163:0.69:237
chr2	210569141	rs55888621	T	G	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr2	210594397	rs116203214	T	C	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	210594540	rs4673486	A	G	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=2.187;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:120,57:0.32:177
chr2	210594717	rs11389149	C	CT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.528;QD=1.49;ReadPosRankSum=0.422;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr2	210594722	.	T	TA	305.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	210594768	rs7594601	T	C	278.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	210659434	rs7603924	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	210678691	rs2159745	T	G	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	210690624	rs7581661	G	T	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr2	210742597	rs116269484	C	T	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:98,41:0.29:139
chr2	210745681	rs2370838	C	A	6992.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	210786137	rs9288415	G	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	210819045	.	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.674;QD=1.54;ReadPosRankSum=-0.662;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr2	210843383	rs2075117	G	A	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr2	210846867	rs2723222	A	G	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	210882171	rs2075116	A	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	210882456	rs2243769	G	T	360.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	210882457	.	C	CT	351.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.17;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	210882677	rs2723213	C	T	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	210883027	rs73005330	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	211069438	rs263677	G	A	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	211082597	rs34384847	ATTTG	A	547.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr2	211163063	rs112894708	T	TACAC,TACACAC	550.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.34;SOR=2.985;set=HC	GT:AD:AF:DP	1/2:0,5,9:0.36,0.64:14
chr2	211167132	rs2292300	A	T	6200.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	211168181	rs35179660	T	TC	806.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	211168346	rs12469767	A	C	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	211302627	rs41272663	C	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	211320041	rs59908560	G	GAAA	905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.16;ReadPosRankSum=-0.988;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:4,32:0.89:36
chr2	211340937	rs3214410	A	AT	1061.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	211341204	rs56033100	G	GC	333.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	211421452	rs3835047	A	ATCT	3743.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:37,93:0.72:130
chr2	211452598	rs149496892	TAC	T	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	211456637	rs1047883	A	G	6347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.68;ReadPosRankSum=2.276;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:144,163:0.53:307
chr2	211456637	.	ACC	GCT	2417	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=4;HapScore=1;MGOF=9;MMLQ=24;MQ=59.92;NF=35;NR=37;PP=2417;QD=34.3120538175;SC=CTTGGACAACACCCTCCCTGC;SbPval=0.49;Source=Platypus;TC=131;TCF=62;TCR=69;TR=72;WE=211456647;WS=211456627;set=Platypus	GT:AD:AF:DP	0/1:59,72:0.55:131
chr2	211456639	rs2229589	C	T	6347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.02;ReadPosRankSum=1.920;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:140,162:0.54:302
chr2	211481257	rs2287599	C	G	5620.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:124,269:0.68:393
chr2	211513118	rs4673540	C	T	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	211514990	rs62203740	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.240;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:96,20:0.17:116
chr2	211514995	rs34449727	G	T	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:22,102:0.82:124
chr2	211515058	rs3213784	A	T	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.071;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:160,46:0.22:206
chr2	211521227	rs200838660	CTT	C,CT	1498.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.430;QD=11.80;ReadPosRankSum=-0.562;SOR=0.646;set=HC	GT:AD:AF:DP	1/2:17,36,74:0.28,0.58:127
chr2	211527827	rs5838215	GT	G	3922.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.521;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.527;QD=13.96;ReadPosRankSum=0.763;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:30,251:0.89:281
chr2	211532800	.	A	ATGTGTG	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=4.100;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.205;QD=11.61;ReadPosRankSum=-0.031;SOR=1.890;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	211533070	rs10932347	A	G	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	211540507	rs1047891	C	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:122,54:0.31:176
chr2	212251864	rs3748962	T	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:21,60:0.74:81
chr2	212252809	rs934607	G	A	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	212285103	rs2289086	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	212286934	rs3791709	A	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr2	212295875	rs6710946	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr2	212488828	rs146953835	GTC	G	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-0.618;QD=0.90;ReadPosRankSum=0.509;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:91,16:0.15:107
chr2	212488870	rs3215298	G	GC	2327.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	212495342	rs202070359	A	AT	3126.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:74,152:0.67:226
chr2	212543924	rs4673628	A	G	2597.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:42,116:0.73:158
chr2	212544024	rs10169970	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	212569879	rs10221746	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.80;ReadPosRankSum=-1.550;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	212569983	rs6723705	G	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr2	212578379	.	T	TA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.222;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:104,23:0.18:127
chr2	212589986	rs35778743	T	C	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:43,81:0.65:124
chr2	212615516	rs6757068	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr2	213291199	rs10166403	A	G	484.78	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr2	213291226	rs34480397	C	CTCTT	376.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	213886454	rs2291241	A	T	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	213886647	rs141472671	A	ATTTTATCT	1581.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.02;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	213914343	rs2165444	C	T	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	213945992	.	G	GA	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-2.984;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr2	214012405	rs6738070	A	C	7705.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=1.618;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.29;ReadPosRankSum=1.403;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:27,335:0.93:362
chr2	214012508	rs6709554	C	T	5988.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	214014881	rs62189577	C	G	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:52,126:0.71:178
chr2	214142631	rs13000409	G	C	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	214161773	rs975956	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	214161849	rs1488988	C	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	214174659	rs72935193	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	214174767	rs10498003	C	T	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	214182100	rs10183630	A	T	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	214228792	rs12469417	C	T	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	214228959	rs4146048	G	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	214233812	rs6752347	C	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	214261534	rs339815	T	C	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	214794743	rs12623569	A	C	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.907;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:258,102:0.28:360
chr2	215013777	rs5838412	GTA	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-2.607;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr2	215013801	.	GTA	G	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=4.661;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=0.000;QD=8.43;ReadPosRankSum=0.098;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	215102884	rs9288491	T	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:32,67:0.68:99
chr2	215102929	rs1912207	T	A	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	215274822	rs140515650	CTT	C	846.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr2	215593261	rs33960630	C	CT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-0.166;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	215595512	rs12614960	C	T	56.80	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	215595645	rs16852600	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr2	215595765	rs6435849	C	G	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	215632124	rs5031008	ATT	A	1213.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	215632155	rs5031009	T	C	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	215632192	rs5031011	G	A	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	215632255	rs2070094	CA	TG	13232.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	215634055	rs6704780	C	T	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	215645464	rs2229571	C	G	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	215674090	rs35933323	T	G	15528.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:4,609:0.99:613
chr2	215674224	rs1048108	G	A	7289.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr2	215674323	rs1129804	C	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	215674341	rs17489363	A	G	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	215674371	rs34732883	C	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	215797332	rs17426207	C	T	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	215797527	rs10532785	AATTC	A	759.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	215802112	rs3738884	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	215809597	rs10633768	G	GTA	164.06	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	215812297	rs2274412	G	A	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	215820013	rs10498027	G	A	10777.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr2	215821580	rs17492577	T	C	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	215833415	rs4673925	A	G	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	215833622	rs6756540	G	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	215840414	rs17493319	C	A	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	215840829	rs7594021	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	215848034	rs7608150	T	C	77.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	215851246	rs7559069	A	G	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	215855780	rs4533467	G	A	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	215862383	rs1980844	G	A	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	215862633	rs1326748	C	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	215872334	rs940279	G	A	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	215874965	rs6733264	G	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	215875251	rs1409607	A	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	215876166	rs7560008	A	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	215878240	rs7594353	G	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	215878246	rs10192100	C	T	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	215880108	rs6753310	C	T	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	215890312	rs2177423	A	G	449.96	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	215890324	rs5838479	G	GT	380.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.253;QD=23.80;ReadPosRankSum=1.221;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr2	215890352	rs5838480	GTT	G	478.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=26.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	215928677	rs12694351	G	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	215928972	rs1523721	G	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	215940242	rs6711179	T	C	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.620;QD=4.02;ReadPosRankSum=0.445;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:211,83:0.28:294
chr2	215976231	rs2948978	A	T	260.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.73;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	216176807	rs4535042	T	G	2276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.354;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=1.188;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:51,116:0.69:167
chr2	216182769	rs4672766	A	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.97;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	216182770	rs75285060	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.124;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr2	216184482	rs16853782	A	G	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=1.478;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:96,50:0.34:146
chr2	216189825	rs3772077	A	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.79;ReadPosRankSum=-0.000;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	216189845	rs3772078	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.47;ReadPosRankSum=-0.217;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	216190020	rs2372536	C	G	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:73,117:0.62:190
chr2	216190691	rs2177737	A	C	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	216191533	rs78562722	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr2	216200907	rs13002576	C	G	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	216209472	rs13010249	A	G	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:96,208:0.68:304
chr2	216211712	rs10932609	A	T	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	216212279	rs4673992	G	C	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	216212339	rs4673993	T	C	3847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-1.502;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:80,175:0.69:255
chr2	216213689	rs61469558	A	T	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.445;QD=2.01;ReadPosRankSum=3.119;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr2	216214124	rs4672768	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	216229692	rs11651	A	G	6191.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:143,298:0.68:441
chr2	216235089	rs1250209	C	T	8420.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr2	216243832	rs1250204	T	C	4353.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:101,206:0.67:307
chr2	216248305	rs1250203	G	T	84.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.15;ReadPosRankSum=0.210;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	216249587	rs13652	C	T	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr2	216249819	rs1250201	C	T	151.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	216253039	rs1250215	G	C	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:65,125:0.66:190
chr2	216256615	rs6709607	T	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	216257949	rs113798880	GA	G	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.710;QD=5.73;ReadPosRankSum=-0.907;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr2	216269030	.	T	TTTTTTG	937.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.74;MQRankSum=3.184;QD=19.14;ReadPosRankSum=-0.954;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr2	216269046	rs56380797	G	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr2	216269095	rs13306359	C	T	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:60,111:0.65:171
chr2	216269209	rs1053238	T	G	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:62,131:0.68:193
chr2	216269254	rs7589580	T	G	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:55,117:0.68:172
chr2	216271812	rs7592898	A	T	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	216272900	rs2577301	T	G	6725.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr2	216274853	rs5838510	A	AAC	1899.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr2	216288841	rs56137176	T	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-1.250;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr2	216299629	rs1250247	C	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.950;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.512;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr2	216300482	rs1250259	T	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:110,47:0.30:157
chr2	216808354	rs150285041	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr2	216810468	rs62183184	A	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.839;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:153,42:0.22:195
chr2	216811707	rs1344695	G	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr2	216861273	rs2303845	T	C	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	216878008	rs1864253	C	G	9762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.237;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:260,462:0.64:722
chr2	216990772	rs28371549	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:85,46:0.35:131
chr2	216996968	.	T	C	351.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	217002951	rs28371547	T	C	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=3.314;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:333,130:0.28:463
chr2	217012901	rs207906	A	G	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	217024697	rs58550995	CT	C	137.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;QD=15.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	217055171	rs12470053	A	G	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	217059809	rs3821102	G	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	217123958	rs169616	T	C	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	217148417	rs876771	C	A	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:51,132:0.72:183
chr2	217280261	rs5838583	GT	G	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.767;QD=8.18;ReadPosRankSum=-0.620;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr2	217281150	rs3214962	AC	A	717.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr2	217364452	rs284573	C	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.041;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	217364539	rs284572	C	T	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	217498290	rs5838590	C	CGCCGCTGCT	1397.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.98;QD=41.11;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	217541582	rs2160549	T	C	17460.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,669:1.00:669
chr2	217724544	rs62180545	A	G	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:185,75:0.29:260
chr2	217736131	rs2241191	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr2	218577575	rs1835333	T	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	218604247	rs4672848	A	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	218604356	rs4294980	G	A	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	218672782	rs34831382	A	G	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:37,62:0.63:99
chr2	218673230	rs143914712	GCA	G	206.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:59,15:0.20:74
chr2	218674697	rs918949	C	T	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:68,137:0.67:205
chr2	218675144	rs918950	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:14,62:0.82:76
chr2	218675199	rs1035672	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr2	218679604	rs186936698	C	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr2	218682474	rs12694422	A	G	5532.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:97,262:0.73:359
chr2	218682771	rs3796026	A	G	7146.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:181,344:0.66:525
chr2	218683154	rs2571445	A	G	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:37,128:0.78:165
chr2	218683257	rs2571442	A	G	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:118,227:0.66:345
chr2	218683368	rs34144104	C	T	3135.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:78,147:0.65:225
chr2	218694510	rs55877504	CT	C	4057.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	218694512	rs55694913	T	G	4066.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	218694551	rs16858298	A	G	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:27,86:0.76:113
chr2	218694691	rs10188605	A	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=2.014;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr2	218694962	rs10165160	C	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	218695102	rs3796028	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:134,61:0.31:195
chr2	218712886	rs375721540	GGCT	G	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=3.629;QD=0.16;ReadPosRankSum=0.728;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:472,38:0.07:510
chr2	218712918	rs3796031	C	T	8841.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:209,409:0.66:618
chr2	218745602	rs75375916	G	A	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.260;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:265,89:0.25:354
chr2	218745685	rs10199795	G	A	10799.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr2	218758123	.	GCA	G	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.502;QD=1.72;ReadPosRankSum=0.850;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:124,26:0.17:150
chr2	218768422	rs3791936	T	G	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr2	218770003	rs7600493	G	A	12137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=0.773;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:196,564:0.74:760
chr2	218801767	rs4674232	C	T	4852.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	218801898	.	TCTACTCCC	T	464	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=23;MQ=60.0;NF=0;NR=2;PP=464;QD=239.0;SC=CAACACTCTGTCTACTCCCCT;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=2;WE=218801913;WS=218801888;set=Platypus	GT:AD:AF:DP	1/0:12,2:0.14:14
chr2	218935299	rs13385042	T	C	4233.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:87,199:0.70:286
chr2	218937850	rs55900869	A	G	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-1.463;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:20,50:0.71:70
chr2	218937860	rs10211510	G	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=1.074;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:65,25:0.28:90
chr2	218938244	rs56200756	T	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr2	218940259	rs7423696	C	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.519;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:155,41:0.21:196
chr2	218940418	rs4674246	C	T	1685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=-1.412;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:43,82:0.66:125
chr2	219000310	rs2230054	C	T	7274.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:149,318:0.68:467
chr2	219082119	rs2271541	G	T	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:259,127:0.33:386
chr2	219082330	rs12694432	A	G	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:235,108:0.31:343
chr2	219093278	rs60528331	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	219099260	rs1018288	G	C	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	219099484	rs10932765	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-1.283;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	219103580	rs10169718	A	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr2	219104316	rs34974153	AT	A	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.088;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr2	219128506	rs2292549	C	T	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	219138940	rs4791	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=5.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.160;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr2	219139573	rs6734242	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	219140288	rs2292550	G	C	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:52,111:0.68:163
chr2	219142023	rs2168703	G	A	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	219142491	rs2271543	C	T	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr2	219142492	rs2168704	G	A	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=4.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.158;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:78,34:0.30:112
chr2	219142594	rs3817266	C	T	6519.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:161,309:0.66:470
chr2	219142773	rs6707559	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,15:0.25:61
chr2	219143229	rs2292551	G	A	8767.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:178,418:0.70:596
chr2	219143327	rs2292552	T	C	5379.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:136,248:0.65:384
chr2	219144089	rs12987180	G	A	2740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-0.122;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:51,128:0.72:179
chr2	219144149	rs12987219	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr2	219144815	rs2045435	T	C	21261.77	.	AC=2;AF=1.00;AN=2;DB;DP=853;set=Intersection	GT:AD:AF:DP	1/1:0,839:1.00:839
chr2	219146607	rs7585702	T	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr2	219146803	rs2292553	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr2	219146868	rs2292554	T	C	436.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.27;ReadPosRankSum=1.677;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr2	219146882	rs2292555	G	C	356.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	219153982	rs34353396	T	C	539.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	219153983	rs10707182	GA	G	530.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	219187901	rs1870125	C	T	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr2	219206435	rs62182085	C	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:215,93:0.30:308
chr2	219206645	rs62182086	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-2.396;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:59,24:0.29:83
chr2	219209393	rs1350336	A	G	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	219221846	rs4324314	G	A	9450.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:183,443:0.71:626
chr2	219221982	.	G	GTCTC,GTCTCTCTCTCTCTC	1064.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.65;QD=42.59;SOR=1.371;set=HC	GT:AD:AF:DP	1/2:0,5,20:0.20,0.80:25
chr2	219222733	rs62182089	G	A	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:456,219:0.32:675
chr2	219227756	rs6723716	T	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr2	219231807	rs3845833	C	T	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	219232354	rs7608923	C	A	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:34,86:0.72:120
chr2	219254622	rs2695342	A	G	11068.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr2	219257688	rs2045433	T	C	7424.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr2	219259270	rs2279015	G	A	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:41,110:0.73:151
chr2	219263277	rs2695344	A	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	219265094	rs2579958	T	C	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=25.11;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	219265136	rs11463820	T	TC	6659.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	219266204	rs2252235	T	C	5449.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	219267781	rs2227255	C	T	9751.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr2	219267913	rs2227258	A	G	20237.77	.	AC=2;AF=1.00;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	1/1:0,769:1.00:769
chr2	219288382	rs4672893	A	G	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr2	219295835	rs4674307	G	A	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	219305404	rs2305833	G	C	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	219319657	rs6436058	A	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	219320207	rs3932856	C	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	219320233	rs139275139	GAAA	G	2105.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.66;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	219321692	rs5838699	CA	C	532.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr2	219327898	.	AACACACAC	A	464.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr2	219339283	rs549026	T	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	219350358	.	CAAAA	C	2369.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.35;SOR=2.304;set=HC	GT:AD:AF:DP	0/1:29,82:0.74:111
chr2	219353195	rs10932782	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	219433597	rs526897	G	A	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	219433888	rs689116	C	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=1.192;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	219445860	rs34214861	GAA	G	2715.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;MQ=60.33;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	219445893	rs5838702	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.272;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	219447912	rs2952825	A	G	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=34.85;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	219447952	.	GTGTGTCTCTCTCTCTCTCTCTCTCTC	G	830	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=1;MGOF=66;MMLQ=27;MQ=51.29;NF=0;NR=43;PP=830;QD=19.3720930233;SC=GTGTGTGTGTGTGTGTCTCTC;SbPval=1.0;Source=Platypus;TC=45;TCF=0;TCR=45;TR=43;WE=219447987;WS=219447940;set=Platypus	GT:AD:AF:DP	1/0:2,43:0.96:45
chr2	219480804	rs485765	G	C	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	219487299	rs1850169	A	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.576;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	219492924	rs612874	T	C	11623.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,458:1.00:458
chr2	219498759	rs7574429	T	G	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	219501133	rs2278530	G	A	16884.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chr2	219501328	rs1055816	G	A	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	219508988	rs3770214	T	C	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	219509618	rs2230115	C	A	6746.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	219517088	rs4674323	T	C	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	219525582	rs6722185	A	G	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	219528577	.	C	T	2060.77	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:44,97:0.69:141
chr2	219691566	rs1467320	A	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-1.043;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr2	219692527	rs11385903	G	GC	7384.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	219692696	rs1722196	G	C	5382.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:116,250:0.68:366
chr2	219692790	rs5838710	A	AG	6390.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=32.44;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	219695487	rs692243	G	C	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:24,55:0.70:79
chr2	219696014	rs650898	G	A	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	219888239	.	C	T	433.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	219892233	rs61749573	T	A	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:76,155:0.67:231
chr2	219903258	rs6736922	T	G	5617.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	219903723	rs4674354	C	T	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	219903787	rs4672910	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	219906066	rs11674400	C	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	219920037	rs394452	A	G	9357.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.554;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.99;ReadPosRankSum=0.458;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:1,359:1.00:360
chr2	219920412	rs3731881	A	G	8679.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr2	219922073	rs34694069	G	GC	3080.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	219923410	rs71974827	G	GAGA	10430.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	219941063	rs897477	G	A	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	219942981	rs41272693	G	A	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:46,86:0.65:132
chr2	220012576	rs7585742	G	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	220022176	rs6436120	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	220022435	rs2030452	G	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	220028900	rs6753739	A	G	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	220033830	rs3795986	A	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:123,57:0.32:180
chr2	220033956	rs6436121	T	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr2	220037393	rs4674361	A	G	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	220037444	rs17655123	G	A	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:54,74:0.58:128
chr2	220037666	rs1127102	A	G	1431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.148;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:236,95:0.29:331
chr2	220037756	rs1043160	A	G	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.865;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:278,94:0.25:372
chr2	220040216	.	C	CA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-1.059;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:109,27:0.20:136
chr2	220040330	rs1127101	A	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:201,86:0.30:287
chr2	220041091	rs6436123	G	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:81,35:0.30:116
chr2	220041433	rs6436124	C	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:44,12:0.21:56
chr2	220041455	rs6436125	C	T	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	220045035	rs7577690	G	A	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr2	220046349	rs2272017	G	C	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.578;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:158,88:0.36:246
chr2	220046840	rs3210652	G	A	6277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.462;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.283;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:131,289:0.69:420
chr2	220046957	rs142234261	A	G	7509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=1.998;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:154,334:0.68:488
chr2	220046975	rs3731900	C	A	2262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=0.507;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:333,138:0.29:471
chr2	220047393	rs3731901	C	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr2	220071803	rs6714820	C	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.94;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	220071879	rs66491679	TG	T	988.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr2	220072766	rs4674366	G	T	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	220072852	rs4674367	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	220078496	rs2139823	T	C	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	220083279	rs1109866	C	T	6087.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	220083453	rs1109867	G	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	220085845	rs2276633	A	G	15284.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr2	220088248	rs908196	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	220089590	rs3216709	T	TG	4281.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	220089685	rs2276637	G	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	220098271	rs74482295	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	220100133	rs75928081	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.621;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr2	220113242	rs7601549	T	G	15023.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr2	220113384	rs8447	G	A	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	220118076	rs60456844	CG	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=1.528;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:172,25:0.13:197
chr2	220118531	rs939574	G	C	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	220131308	rs192657625	G	A	2912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-0.211;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:59,137:0.70:196
chr2	220135208	rs2891733	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	220136155	rs7594971	T	C	20322.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:2,783:1.00:785
chr2	220136351	rs3731892	G	A	17859.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,650:1.00:650
chr2	220136371	rs3731894	T	C	15484.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr2	220145286	rs2276638	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,30:0.38:78
chr2	220146402	rs3731896	C	T	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.564;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:85,19:0.18:104
chr2	220146609	.	C	CG	50	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=4;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=0;NR=3;PP=50;QD=27.0;SC=TGAGGTCCCCCGCTCAGGGCA;SbPval=1.0;Source=Platypus;TC=19;TCF=9;TCR=10;TR=3;WE=220146617;set=Platypus	GT:AD:AF:DP	0/1:16,3:0.16:19
chr2	220146651	rs3731897	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:58,19:0.25:77
chr2	220147732	rs2276639	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr2	220168607	rs2271593	C	T	1981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.967;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=1.125;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:136,62:0.31:198
chr2	220168616	rs2271594	C	T	1842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=2.142;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:118,52:0.31:170
chr2	220194137	rs201086488	CAG	C	3135.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:34,78:0.70:112
chr2	220194531	rs149517641	CG	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.458;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr2	220195446	rs6707009	C	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-0.345;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	220197207	rs2048737	T	C	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.438;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr2	220197321	rs2385405	C	T	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-1.083;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:160,49:0.23:209
chr2	220197388	rs2385404	C	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=8.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.314;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:196,58:0.23:254
chr2	220197424	rs2385403	C	T	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=18.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.044;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:152,52:0.25:204
chr2	220197492	rs2385402	C	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=12.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.323;SOR=1.319;set=HC	GT:AD:AF:DP	0/1:102,39:0.28:141
chr2	220197835	rs139479208	ATAATATTATATATTAT	A	772.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=16.44;ReadPosRankSum=-0.873;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr2	220197929	.	CTT	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-1.241;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	220239534	rs3731904	G	A	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	220239561	rs3731905	C	G	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	220246218	rs6436148	T	C	11204.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr2	220249299	rs5838737	C	CT	2833.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:3,123:0.98:126
chr2	220249329	rs2002892	C	T	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	220250147	rs907679	A	G	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	220250322	rs878437	C	A	8732.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr2	220250826	rs2271456	G	A	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	220250897	rs11352428	AG	A	835.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	220251178	rs2271457	T	C	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	220251208	rs1040009	T	C	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:64,135:0.68:199
chr2	220252287	rs138394024	CTCG	C	7602.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	220264412	rs13018645	A	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr2	220264543	rs58721028	C	CAT	9381.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	220283259	rs1318299	A	G	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	220283277	rs2017800	T	C	7161.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	220283826	rs907677	T	G	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	220284779	rs12991025	C	T	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr2	220285309	rs1058261	C	T	1719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.999;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:320,121:0.27:441
chr2	220285666	rs12920	G	C	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:322,133:0.29:455
chr2	220286142	rs1058284	G	A	2415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=1.498;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:230,139:0.38:369
chr2	220306413	rs4674398	G	T	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	220308581	rs10932805	A	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	220315970	rs10932806	G	A	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:75,155:0.67:230
chr2	220316579	rs4674399	C	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	220330642	.	TGTGCGCGC	T	992.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=7.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=2.667;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:96,43:0.31:139
chr2	220330646	rs1976618	C	T	2573.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=10.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.59;ReadPosRankSum=-0.633;SOR=1.571;set=HC	GT:AD:AF:DP	0/1:45,80:0.64:125
chr2	220330657	rs68012340	GTGCA	G	961.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=4.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=2.520;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:112,43:0.28:155
chr2	220330661	rs1976617	A	G	4164.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:43,112:0.72:155
chr2	220330724	rs1567488	C	T	6617.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:106,292:0.73:398
chr2	220330804	rs1567487	T	C	8349.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:175,397:0.69:572
chr2	220333950	rs10167209	T	C	10607.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr2	220337196	rs1039897	G	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	220341935	rs201853159	A	AG	481.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=40.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	220341938	.	C	CGGGGCCTGGTACAGCGGCT	480.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=40.06;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	220346596	rs3731906	C	T	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	220353104	rs875097	A	G	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chr2	220353532	rs13026308	C	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.251;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:250,57:0.19:307
chr2	220356806	rs907146	C	T	11831.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,460:1.00:460
chr2	220361265	rs2385541	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	220362899	rs2029251	C	G	15724.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr2	220366953	rs2385539	G	C	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	220371035	rs1046474	C	G	8575.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:162,407:0.72:569
chr2	220371181	rs10932808	T	A	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	220379560	rs3731909	C	G	17711.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.89;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,684:1.00:684
chr2	220380125	rs1872858	G	A	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	220397811	rs6731344	T	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	220400049	rs144993868	ATG	A	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.506;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:113,14:0.11:127
chr2	220401751	rs2385538	G	A	4344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=0.214;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:100,204:0.67:304
chr2	220402624	rs11689270	G	T	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	220402671	rs11689281	G	T	1922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=0.524;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:93,54:0.37:147
chr2	220402680	rs11695248	T	C	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=1.172;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:115,59:0.34:174
chr2	220404381	rs1976616	A	G	7424.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr2	220404648	rs1043833	C	T	3853.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:70,179:0.72:249
chr2	220404726	rs1043832	G	A	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:38,141:0.79:179
chr2	220405230	rs6436154	G	A	5533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.286;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=12.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=0.120;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:81,249:0.75:330
chr2	220405321	rs6436155	T	C	8798.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr2	220406239	rs13004994	T	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr2	220406722	rs3731912	T	C	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:362,134:0.27:496
chr2	220406944	rs7581251	G	A	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	220409701	rs10932811	C	T	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:45,73:0.62:118
chr2	220412256	rs8179770	T	C	7749.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr2	220413658	rs56198734	CA	C	59.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr2	220413661	rs12996466	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	220414016	rs6436156	C	T	5783.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.45;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	220414016	.	CCCT	TCCC,TCCT	930	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=26,32;NR=45,58;PP=930,42;QD=13.8516602093;SC=GGCCACCAGACCCTGCTTATC;SbPval=0.48;Source=Platypus;TC=91;TCF=32;TCR=59;TR=71,90;WE=220414027;WS=220414006;set=Platypus	GT:AF:DP	0/1:0.78:91
chr2	220414019	rs13023533	T	C	2368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=0.196;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:26,111:0.81:137
chr2	220415595	rs146790993	GGA	G	5437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.357;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.069;QD=23.85;ReadPosRankSum=-0.149;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:82,146:0.64:228
chr2	220415646	rs1043582	T	C	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.715;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:39,95:0.71:134
chr2	220415717	rs3731918	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr2	220415752	rs6745782	C	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	220416164	rs6761575	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	220416570	rs4672931	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	220416591	rs4672932	C	T	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	220416803	rs4672933	A	T	8711.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr2	220416942	rs34490902	G	C	2900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.407;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=2.166;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:43,137:0.76:180
chr2	220416967	rs4672934	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.639;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:96,21:0.18:117
chr2	220417228	rs60549465	G	T	2888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=-1.225;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:63,136:0.68:199
chr2	220417266	rs59332477	C	T	4731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-0.072;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:88,221:0.72:309
chr2	220419236	rs10932813	T	C	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	220419339	rs10932814	T	C	9846.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr2	220420785	rs3087971	G	A	4694.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:126,224:0.64:350
chr2	220420956	rs10932816	A	G	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	220421417	rs1983210	C	G	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.576;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:255,89:0.26:344
chr2	220421479	rs13010015	A	G	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:36,80:0.69:116
chr2	220422400	rs2278200	C	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr2	220422774	rs2278201	A	G	4757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=1.558;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:162,237:0.59:399
chr2	220427347	rs10804275	G	T	7767.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:172,360:0.68:532
chr2	220427395	rs3183099	G	A	4997.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:116,237:0.67:353
chr2	220427428	rs55904205	GA	G	5545.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:71,166:0.70:237
chr2	220427996	rs11904583	T	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	220428381	rs2303543	A	T	1828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.721;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:425,138:0.25:563
chr2	220430203	rs1039898	C	T	14805.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:2,574:1.00:576
chr2	220431802	rs115194510	G	A	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.385;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:262,82:0.24:344
chr2	220431919	rs4674412	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	220432709	rs2292360	A	T	3034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.925;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:533,203:0.28:736
chr2	220435034	rs10180675	A	G	26704.77	.	AC=2;AF=1.00;AN=2;DB;DP=995;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,991:1.00:991
chr2	220435375	rs1061399	G	A	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:199,69:0.26:268
chr2	220437081	rs35118453	C	T	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:24,85:0.78:109
chr2	220439678	rs12720063	C	T	13809.77	.	AC=1;AF=0.500;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	0/1:262,641:0.71:903
chr2	220439916	rs12720062	G	A	4560.77	.	AC=1;AF=0.500;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	0/1:573,273:0.32:846
chr2	220462640	rs681747	G	T	9147.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr2	220466199	rs620698	G	T	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	220466344	rs11405075	G	GT,GTT	1434.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=-0.283;QD=12.81;ReadPosRankSum=0.290;SOR=0.604;set=HC	GT:AD:AF:DP	1/2:21,57,34:0.51,0.30:112
chr2	220471116	rs633200	C	G	12329.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr2	220473355	rs673951	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:150,51:0.25:201
chr2	220476443	rs627530	C	T	15062.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr2	220476645	rs581547	T	C	6612.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	220477976	.	A	AGGGGGGAGATGGGGTGAGTT	499.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.896;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=9.853;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.292;QD=19.22;ReadPosRankSum=1.246;SOR=2.425;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	220479055	rs2305052	C	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	220479312	rs624773	T	C	7554.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr2	220480639	rs640807	T	C	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	220480693	rs665845	G	C	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	220494118	rs597306	A	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	220495167	rs612078	A	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	220500321	rs2305055	C	G	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:26,74:0.74:100
chr2	220500423	rs589767	A	G	10397.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	220500426	rs639214	A	G	10495.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	220502367	rs635311	A	C	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:367,183:0.33:550
chr2	220505265	rs684428	T	C	3283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=2.094;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:541,217:0.29:758
chr2	220505421	rs72961491	C	T	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr2	220506522	rs2305054	G	A	2248.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:28,101:0.78:129
chr2	220586367	rs368069746	AAG	A	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.079;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr2	220771223	rs4674470	C	T	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	220771290	rs4674471	G	A	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	220771310	rs4674472	A	G	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	220771378	rs4674473	A	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	222290902	rs2303901	A	G	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	222301357	rs3213844	T	C	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	222301713	rs2303900	C	T	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.791;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:130,60:0.32:190
chr2	222301912	rs2303897	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr2	222307534	rs2288628	G	T	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.817;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:213,76:0.26:289
chr2	222307778	rs67269206	CAAGATGA	C	91.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr2	222320427	rs2288627	G	A	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	222321225	rs6718949	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	222431507	rs66502809	G	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=1.008;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:76,9:0.11:85
chr2	222431521	rs35574019	G	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.834;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:70,9:0.11:79
chr2	222431574	.	G	GAGAAGA	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=4.474;QD=19.40;ReadPosRankSum=2.335;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr2	222431689	.	G	GGAAGAAGAAGAAGAAGAAGAAGAA	940.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.56;QD=67.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	222435035	rs200647532	TCC	T	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	222435048	rs2710504	A	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	222437136	rs11381414	A	AG	256.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.09;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	223065870	rs3731858	C	G	5151.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:129,240:0.65:369
chr2	223066536	.	C	CA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=1.864;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	223161889	rs12623857	A	G	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:65,101:0.61:166
chr2	223162024	rs6754024	T	G	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.087;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	223423362	rs4674664	A	G	11554.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:4,456:0.99:460
chr2	223436607	rs7185	C	T	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	223489249	rs3214770	GT	G	185.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr2	223493435	rs2019357	G	A	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.25;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	223493435	.	GTAGCG	ATAGCA,ATAGCG	428	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=26;MQ=60.0;NF=17,25;NR=16,24;PP=428,107;QD=14.5899356019;SC=TGCACATAGTGTAGCGCCTGG;SbPval=0.6;Source=Platypus;TC=49;TCF=25;TCR=24;TR=33,49;WE=223493448;WS=223493425;set=Platypus	GT:AF:DP	0/1:0.67:49
chr2	223493440	rs34167083	G	A	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-0.349;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:34,81:0.70:115
chr2	223498167	rs7340227	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=1.355;QD=7.69;ReadPosRankSum=-0.382;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	223498173	.	C	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-3.272;QD=9.05;ReadPosRankSum=-0.606;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr2	223498189	.	G	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-3.401;QD=12.99;ReadPosRankSum=-0.898;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	223498191	.	T	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-3.323;QD=13.41;ReadPosRankSum=-1.149;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr2	223499077	rs13410038	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr2	223520905	rs2166652	G	C	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr2	223520978	rs2044537	A	G	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	223780921	rs12623448	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	223781018	rs35780866	T	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	223785504	rs6739824	T	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr2	223785740	rs6756323	A	G	1659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.309;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:289,112:0.28:401
chr2	223785846	rs6728234	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	223787559	rs11891410	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	223787691	rs10932978	G	A	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	223793480	rs1550420	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	223798141	rs6726737	A	C	163.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.90;ReadPosRankSum=1.602;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr2	223799207	rs935030	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	223806189	rs35090606	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.073;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr2	223806194	rs1550426	C	T	551	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.70;ReadPosRankSum=1.022;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr2	223917629	rs3795886	C	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:188,71:0.27:259
chr2	223917812	rs10201907	T	C	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	223917983	rs12621643	T	G	2001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-0.102;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:370,139:0.27:509
chr2	223918080	rs10189762	C	G	12157.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr2	224629851	rs11455542	C	CT	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:62,17:0.22:79
chr2	224629876	rs10644138	C	CCAT	1105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.586;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:98,33:0.25:131
chr2	224637967	rs16865186	A	G	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=1.768;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:95,43:0.31:138
chr2	224640803	rs59118867	C	CAA	11167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.03;ReadPosRankSum=-0.509;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:144,285:0.66:429
chr2	224702305	rs3738961	G	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr2	224743373	rs571111	C	T	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:99,172:0.63:271
chr2	224743591	rs602675	C	T	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr2	224743652	rs547234	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	224744701	rs516849	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	224749576	.	C	CTTCT	200.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.68;ReadPosRankSum=1.465;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	224758906	rs625150	C	T	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	224760359	rs150347314	TGA	T	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-2.216;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:113,17:0.13:130
chr2	224760494	rs597349	G	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	224763816	rs530065	C	T	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	224765894	rs604990	G	A	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	224770780	rs622896	C	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	224777094	rs541712	T	C	10385.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr2	224777105	rs113054269	G	GTGAT	9288.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	224822043	rs3738960	C	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr2	224842150	rs7597833	T	C	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	224844919	rs729631	C	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	224862821	rs3795879	C	T	7318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=0.758;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:186,356:0.66:542
chr2	224862842	rs12457	A	G	7047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=0.258;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:180,342:0.66:522
chr2	224863090	rs10170379	C	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr2	225368321	rs3738951	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr2	225376032	rs6743816	G	C	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-0.527;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr2	225378382	rs3830376	ATAAT	A	532.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr2	225434445	rs10498163	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr2	225449893	.	GGGCGGC	G	1473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.157;QD=24.56;ReadPosRankSum=-2.516;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:22,38:0.63:60
chr2	225665074	rs1560859	G	A	145.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	225668717	rs141021252	ATG	A	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.965;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.414;QD=6.63;ReadPosRankSum=0.014;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr2	225688041	rs13405571	A	G	292.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=1.876;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr2	225688100	rs13431331	G	A	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.170;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=1.038;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:14,59:0.81:73
chr2	225702565	rs6724332	G	A	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:74,154:0.68:228
chr2	225709336	rs16866219	C	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	225719571	rs72305904	GCCAACCAA	G,GCCAA	3120.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.35;QD=38.53;SOR=1.952;set=HC	GT:AD:AF:DP	1/2:0,58,23:0.72,0.28:81
chr2	225719693	rs16866236	G	A	7520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.027;QD=13.98;ReadPosRankSum=0.388;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:183,355:0.66:538
chr2	225751256	rs71734299	TA	T	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.208;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	225781670	rs13013616	T	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr2	225796112	rs17271574	G	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	225796458	rs35061287	ATC	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.95;ReadPosRankSum=-0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	225848579	rs375205	T	C	10101.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr2	225875158	rs590233	A	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	226273490	rs2048935	T	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	226273689	rs2048936	T	C	9801.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr2	226447735	rs3828256	C	T	7936.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chr2	226447844	rs6436570	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	226491770	rs3748993	A	C	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr2	226516346	rs11884382	T	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	227661043	rs1801123	T	C	4290.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:71,199:0.74:270
chr2	227663185	rs3731597	G	A	6941.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:146,329:0.69:475
chr2	227773354	rs74659334	G	GAC	511.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr2	227773466	rs3820928	T	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,56:0.73:77
chr2	227779191	rs3820927	C	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	227807202	rs6436641	G	T	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:21,68:0.76:89
chr2	227872182	rs2228557	G	A	1705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=-0.775;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:29,79:0.73:108
chr2	227872995	rs2228555	T	C	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:72,149:0.67:221
chr2	227873028	rs13419076	A	G	1901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=1.893;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:41,91:0.69:132
chr2	227874957	rs4423583	C	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,45:0.82:55
chr2	227877037	rs10188770	G	A	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:88,170:0.66:258
chr2	227886773	rs3752895	A	G	3019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.940;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:72,144:0.67:216
chr2	227886925	rs3752896	C	T	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:69,155:0.69:224
chr2	227887092	rs148294208	G	T	2925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=0.415;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:52,137:0.72:189
chr2	227892619	rs2228556	C	T	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=1.465;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:32,37:0.54:69
chr2	227892720	rs2229813	C	T	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=1.554;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:35,73:0.68:108
chr2	227895125	rs1917127	A	G	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr2	227895169	rs116124529	A	G	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:39,85:0.69:124
chr2	227896652	rs13423714	C	G	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr2	227896886	rs2229812	C	T	5353.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:101,253:0.71:354
chr2	227896976	rs10203363	C	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:30,66:0.69:96
chr2	227897076	rs10179756	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr2	227912331	rs2272200	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr2	227914625	rs2272202	T	C	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	227914655	rs2272203	C	G	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	227914975	rs2251223	T	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr2	227915832	rs1800517	G	A	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:64,170:0.73:234
chr2	227917240	rs3769644	C	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr2	227917270	rs3769643	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr2	227922104	rs7567789	T	C	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.483;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=10.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.23;ReadPosRankSum=0.897;SOR=3.477;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	227922109	rs7567796	T	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.036;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=8.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.86;ReadPosRankSum=0.258;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	227922454	rs2141829	G	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=-0.364;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr2	227924360	rs200590191	A	AT	992.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr2	227924817	.	G	GAAA	261	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=21;HapScore=2;MGOF=56;MMLQ=21;MQ=57.38;NF=2;NR=1;PP=261;QD=88.0;SC=TCCCAAAGCAGAAAAAAAAAA;SbPval=0.57;Source=Platypus;TC=8;TCF=6;TCR=2;TR=3;WE=227924825;WS=227924807;set=Platypus	GT:AD:AF:DP	1/1:5,3:0.38:8
chr2	227925097	rs6436650	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.29;ReadPosRankSum=-0.431;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	227954599	rs2229814	G	A	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=0.566;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:38,64:0.63:102
chr2	227966148	rs16823202	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.895;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=0.573;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	227966298	rs59443812	T	TA	1624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.595;QD=11.36;ReadPosRankSum=0.598;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:43,100:0.70:143
chr2	227967601	rs11274738	ACAATATTTCAGCAATAGGGAAAG	A	2779.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:4,138:0.97:142
chr2	227967830	rs10707643	GA	G	456.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	227968553	rs7602059	A	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	227973095	rs7600536	A	T	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	227973193	rs10174459	G	A	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.491;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:101,43:0.30:144
chr2	227973410	rs55741079	C	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr2	227973623	rs12475686	A	G	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	227973873	rs58363082	T	C	2759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=0.172;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:207,82:0.28:289
chr2	227973878	rs59938187	C	T	2774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-1.218;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:184,85:0.32:269
chr2	227973892	rs73082223	T	C	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:186,81:0.30:267
chr2	227974113	rs6436654	A	G	10919.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=-0.999;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:2,430:1.00:432
chr2	227974191	rs6436655	A	G	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=31.20;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	227974193	rs7578239	G	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.625;QD=3.94;ReadPosRankSum=-0.010;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:105,39:0.27:144
chr2	227976226	rs4519512	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-1.247;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr2	227976230	rs4306711	C	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.247;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr2	228012022	.	G	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.215;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr2	228102752	rs1882435	C	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.080;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:112,26:0.19:138
chr2	228104760	rs7579991	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=2.089;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr2	228109626	rs113428834	T	TG	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.659;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr2	228109784	rs6750210	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.267;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr2	228111435	rs10178458	T	C	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.969;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-2.279;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:138,63:0.31:201
chr2	228111600	rs10168566	G	T	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=6.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-0.751;SOR=1.504;set=HC	GT:AD:AF:DP	0/1:50,32:0.39:82
chr2	228111604	rs10168567	G	T	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=0.329;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr2	228111651	rs10192026	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	228112186	rs4321358	A	G	3029.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.725;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=16.021;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.64;ReadPosRankSum=-0.459;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:5,135:0.96:140
chr2	228113175	rs6436669	A	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=1.084;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:115,34:0.23:149
chr2	228118156	rs55997063	T	A	4747.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:79,222:0.74:301
chr2	228118403	rs12621551	T	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	228119461	rs35467545	G	A	4090.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:120,198:0.62:318
chr2	228122239	rs56326869	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr2	228124702	rs4332918	A	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr2	228128540	rs10205042	C	T	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:62,112:0.64:174
chr2	228128568	rs34505188	G	A	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:74,143:0.66:217
chr2	228131169	rs11677877	A	G	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:52,128:0.71:180
chr2	228131752	rs34019152	G	A	1799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=-1.014;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:37,82:0.69:119
chr2	228137543	rs35793546	A	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	228142038	.	GAAA	G	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.041;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr2	228144706	rs6729152	G	T	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=1.555;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:67,17:0.20:84
chr2	228145543	rs6436671	C	T	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=1.958;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:67,39:0.37:106
chr2	228146991	rs72371878	AAT	A	288.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	228158418	rs7569636	T	C	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.404;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:78,36:0.32:114
chr2	228158648	rs7608999	G	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.859;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr2	228159063	rs6436675	T	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	228173850	.	T	C	4517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.839;ClippingRankSum=0.000;DP=326;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=0.895;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:108,217:0.67:325
chr2	228194570	rs6706656	G	A	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	228194639	rs11384091	T	TA	407.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.535;QD=19.42;ReadPosRankSum=1.275;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr2	228197238	rs11557342	G	A	6148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.882;QD=14.71;ReadPosRankSum=-0.518;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:126,292:0.70:418
chr2	228197368	rs4500938	A	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	228204929	rs4420693	C	T	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	228204982	rs4442987	C	T	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	228207625	rs6738078	G	A	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	228220528	rs12478005	T	C	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr2	228356182	rs71412126	GAAATATTT	G	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	228356364	rs11289047	GT	G	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.564;QD=10.04;ReadPosRankSum=1.105;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:10,38:0.79:48
chr2	228373404	rs11464376	A	AT	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=0.877;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr2	228398422	rs13015491	A	G	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:163,87:0.35:250
chr2	228399480	rs7588620	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	228414974	rs4635528	A	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.220;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr2	228416712	rs13426457	A	G	10909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=-2.562;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:226,523:0.70:749
chr2	228418610	rs71873735	TATATTG	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-1.645;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	228476140	rs2176186	C	T	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:49,123:0.72:172
chr2	228476253	rs2138402	C	G	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	228477819	rs11683530	G	A	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr2	228560800	rs11334205	GA	G	6845.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr2	228565656	rs11694828	G	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	228680153	rs11422779	C	CT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.873;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:73,21:0.22:94
chr2	228758367	rs114577194	G	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-1.090;QD=12.03;ReadPosRankSum=-0.654;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	228758387	rs144569800	T	TAAAC	2145.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=52.33;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	228763031	.	G	GTA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-1.245;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	228767618	rs2949014	T	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	228855866	rs16824283	G	C	5964.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:124,277:0.69:401
chr2	228883029	rs3811515	A	C	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:112,56:0.33:168
chr2	228883721	rs3811514	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:136,51:0.27:187
chr2	228886413	rs11292511	TG	T	454.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr2	228973383	rs67714256	A	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.67;ReadPosRankSum=-0.730;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	228973660	rs7561798	A	G	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:38,104:0.73:142
chr2	228973723	rs11374866	C	CT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.756;QD=8.40;ReadPosRankSum=-1.205;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	228992763	rs6719186	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.40;ReadPosRankSum=0.180;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	228992850	rs6734166	T	C	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=1.569;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:29,45:0.61:74
chr2	228996637	rs4479423	G	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr2	228996650	rs4353646	A	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr2	228996672	rs4585022	G	A	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chr2	229035427	rs11685283	T	C	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	230092889	rs1419944	C	T	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	230092950	rs1419945	C	T	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	230096587	rs1226982	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	230135527	rs1227013	C	T	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	230135711	rs67686611	G	GC	4370.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	230231889	rs2302769	A	T	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.284;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:70,16:0.19:86
chr2	230271780	rs7562609	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	230282624	rs6760224	G	A	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	230341979	rs146727100	AC	A	674.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.450;QD=2.69;ReadPosRankSum=0.247;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:200,51:0.20:251
chr2	230453214	rs11458391	G	GA	2322.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.29;ReadPosRankSum=-0.841;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:12,115:0.91:127
chr2	230655733	rs722268	C	T	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	230656987	.	T	TA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=4.400;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.823;QD=0.84;ReadPosRankSum=0.665;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr2	230663443	rs6749045	A	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	230663576	rs6720868	C	T	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr2	230666898	rs10432554	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.90;ReadPosRankSum=-0.172;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	230668858	rs13018957	T	C	7962.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr2	230668968	rs4972915	G	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	230668982	rs4973229	T	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	230705516	rs34481385	TA	T	1172.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:17,80:0.82:97
chr2	230744570	rs479492	C	T	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	230914766	rs6748654	T	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	231036311	rs12988385	T	C	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:117,72:0.38:189
chr2	231036754	rs34897866	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-1.597;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:144,23:0.14:167
chr2	231036768	rs34034766	T	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-1.432;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:177,32:0.15:209
chr2	231036866	rs13018234	G	A	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=1.540;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:207,68:0.25:275
chr2	231037481	rs12995739	T	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.341;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr2	231042276	rs1135791	A	G	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.787;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.591;QD=3.56;ReadPosRankSum=-0.765;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:407,140:0.26:547
chr2	231048549	rs145404147	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.22;ReadPosRankSum=1.611;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	231050569	rs2114591	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	231050715	rs3948464	A	G	10919.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,427:1.00:427
chr2	231072709	rs1365776	C	T	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	231076032	rs3769837	G	T	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	231076289	rs3820974	T	G	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	231077112	rs28930679	G	A	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:95,110:0.54:205
chr2	231077154	rs41309096	G	A	3119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=0.090;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:99,150:0.60:249
chr2	231077725	rs1129411	A	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	231077868	rs7601176	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.677;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=8.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=1.991;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr2	231077911	rs7601190	A	C	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	231081405	rs7580912	T	C	349.82	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr2	231103185	rs2278197	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr2	231106244	rs2288328	G	C	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:18,63:0.78:81
chr2	231118186	rs3769840	G	A	4067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=1.946;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:94,196:0.68:290
chr2	231120255	rs55829350	CG	C	105.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	231149108	rs4972946	G	A	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	231175763	rs78116662	G	A	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.321;QD=4.11;ReadPosRankSum=0.434;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:113,44:0.28:157
chr2	231176040	rs139570354	G	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=46.32;MQRankSum=-6.102;QD=9.69;ReadPosRankSum=-0.899;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:48,51:0.52:99
chr2	231223975	rs11678791	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.85;ReadPosRankSum=1.150;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	231236505	rs12474823	C	T	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=-0.585;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:32,52:0.62:84
chr2	231248261	rs28497362	C	T	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=1.760;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	231256812	rs7559665	A	G	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.168;QD=4.37;ReadPosRankSum=1.877;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:266,107:0.29:373
chr2	231258150	rs7590429	C	T	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr2	231258218	rs7563909	A	T	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:54,11:0.17:65
chr2	231261620	rs6732940	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:186,76:0.29:262
chr2	231307584	rs17333189	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=1.198;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:81,22:0.21:103
chr2	231307860	rs2303608	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	231309139	rs55637456	A	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.334;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	231326188	rs11692640	A	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.218;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:84,18:0.18:102
chr2	231326201	rs11681514	C	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.257;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:74,14:0.16:88
chr2	231327291	rs1649863	A	G	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:52,83:0.61:135
chr2	231328696	rs2306274	C	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr2	231328720	rs2306275	C	T	4701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.58;ReadPosRankSum=-0.160;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:30,110:0.79:140
chr2	231328728	rs2306276	C	T	4971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.41;ReadPosRankSum=0.677;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:41,134:0.77:175
chr2	231328813	rs140194556	T	C	4972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=0.950;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:77,237:0.75:314
chr2	231330826	rs113262860	G	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=0.937;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr2	231331694	rs1678159	A	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	231331701	rs3214547	A	AG	384.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.09;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	231331706	rs2303609	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=-0.079;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	231331799	rs1649869	T	C	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	231331896	rs1050224	G	A	7654.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr2	231333763	rs12724	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr2	231333834	rs1649873	G	A	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr2	231333852	rs1649874	A	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr2	231333890	rs1649875	C	T	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr2	231334010	rs1649877	C	T	1773.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.16;ReadPosRankSum=-1.176;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:18,45:0.71:63
chr2	231334011	rs1649878	A	G	1773.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.16;ReadPosRankSum=-0.957;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:18,45:0.71:63
chr2	231334216	rs1051579	T	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr2	231334299	rs1051580	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	231334421	rs1051581	A	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	231334504	rs139756804	AAAAG	A	782.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-0.204;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:51,60:0.54:111
chr2	231334679	rs1678162	A	G	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:18,71:0.80:89
chr2	231337960	rs1615190	C	T	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	231338211	rs1678169	T	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:27,65:0.71:92
chr2	231359225	rs6759377	T	C	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:50,113:0.69:163
chr2	231363252	rs34979917	TA	T	265.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.61;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	231368897	rs6705605	G	T	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr2	231375974	rs16827319	G	A	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:91,159:0.64:250
chr2	231406070	rs17275036	G	A	4506.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:72,211:0.75:283
chr2	231406680	rs836237	T	C	6257.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	231406846	rs10199013	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr2	231407519	rs6717269	C	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	231407663	rs9288668	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:212,78:0.27:290
chr2	231738168	rs2289235	G	A	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-0.098;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:147,76:0.34:223
chr2	231738263	rs2289234	C	T	3753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=2.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-1.324;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:258,112:0.30:370
chr2	231738269	rs2289233	G	A	3583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-1.189;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:240,105:0.30:345
chr2	231738318	rs3816150	T	C	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.952;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:135,60:0.31:195
chr2	231740276	rs2289231	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	231860848	rs6722863	A	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	231943505	.	C	CT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=0.274;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	232026050	rs62193732	A	G	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.157;QD=2.16;ReadPosRankSum=0.297;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:118,27:0.19:145
chr2	232072929	rs35643982	C	T	2649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-1.505;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:73,130:0.64:203
chr2	232087474	rs1626450	AT	GA	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	232121172	rs202122259	C	CA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.576;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:107,25:0.19:132
chr2	232196472	rs1729082	T	A	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:56,112:0.67:168
chr2	232196564	rs1669083	C	T	6377.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:134,299:0.69:433
chr2	232196597	rs1669084	G	A	6163.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:131,290:0.69:421
chr2	232225535	rs35889244	C	CG	11539.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.45;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	232260537	rs4972989	T	G	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	232263127	rs2290130	G	A	9540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-0.771;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:186,451:0.71:637
chr2	232317402	rs11295750	CA	C	1393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.023;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:245,66:0.21:311
chr2	232320856	rs150234462	G	GA	186.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	232321956	rs7598759	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:110,43:0.28:153
chr2	232322829	rs6712148	T	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.72;ReadPosRankSum=-0.405;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	232326417	rs1131171	C	T	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:110,48:0.30:158
chr2	232326801	rs2595514	A	T	9327.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr2	232378231	rs6750795	T	C	10182.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr2	232389744	rs3752762	A	G	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.405;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:115,47:0.29:162
chr2	232390151	rs3752763	A	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-2.123;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:88,33:0.27:121
chr2	232458443	rs10933378	T	C	12709.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr2	232572381	rs6737601	A	G	3240.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:55,143:0.72:198
chr2	232574807	rs2241742	C	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	232673378	rs60365791	A	AT	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=5.524;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.259;QD=4.29;ReadPosRankSum=0.513;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr2	232790053	rs5268	C	T	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr2	232995569	.	T	TA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.916;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr2	233028070	rs3116181	A	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	233243660	rs2014448	T	C	9641.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	233244586	rs2853374	C	G	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	233244930	rs1048988	G	C	11939.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.57;QD=30.15;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr2	233244930	.	GCATGGGA	CCATGGGA,CCATGGGG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=26;MQ=48.59;NF=157,49;NR=107,16;PP=2962,919;QD=20;SC=TACATGTTTCGCATGGGAACC;SbPval=0.52;Source=Platypus;TC=265;TCF=158;TCR=107;TR=264,65;WE=233244945;WS=233244920;set=Platypus	GT:AF:DP	0/1:1.00:265
chr2	233244937	rs1048989	A	G	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.320;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=14.588;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=0.246;QD=2.91;ReadPosRankSum=-2.449;SOR=1.784;set=HC	GT:AD:AF:DP	0/1:343,94:0.22:437
chr2	233245090	rs2260307	A	G	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:187,128:0.41:315
chr2	233245141	rs2260309	T	C	4256.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:373,212:0.36:585
chr2	233245210	rs13034594	C	T	10181.77	.	AC=1;AF=0.500;AN=2;DB;DP=1338;set=Intersection	GT:AD:AF:DP	0/1:778,552:0.42:1330
chr2	233271697	rs369374441	TAC	T	13705.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-1.702;QD=30.19;ReadPosRankSum=1.826;SOR=0.574;set=HC	GT:AD:AF:DP	1/1:14,440:0.97:454
chr2	233272162	rs2678517	G	A	7064.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr2	233272616	rs146780985	C	T	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:84,215:0.72:299
chr2	233272925	rs2678518	A	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	233273107	rs1130346	A	G	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.38;QD=30.07;SOR=1.409;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	233273126	rs2678519	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.31;QD=58.58;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	233273131	.	GTGCTGGGCA	G	187.87	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.32;QD=46.97;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	233274145	rs2090543	G	C	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	233274169	rs2091555	T	C	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	233323177	rs2003780	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	233346662	rs909432	A	C	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	233347919	rs6750085	C	G	8137.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr2	233349588	rs1529874	G	A	16509.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,646:1.00:646
chr2	233350000	rs2573246	C	G	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	233385396	rs1550094	G	A	10068.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr2	233386229	rs2853444	T	C	8492.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr2	233386583	rs2853445	T	C	3803.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:93,177:0.66:270
chr2	233387635	rs733603	A	G	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	233388813	rs2741299	T	G	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	233389167	rs58091792	G	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr2	233389918	rs2853447	A	G	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	233390937	rs2245601	A	G	6046.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	233391463	rs2278478	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr2	233391965	rs4973537	A	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr2	233392020	rs113930536	A	AAAAG	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=1.732;QD=5.02;ReadPosRankSum=-0.144;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:76,33:0.30:109
chr2	233400074	rs2767	A	G	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:94,46:0.33:140
chr2	233404294	rs11674608	C	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-1.655;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr2	233404334	rs140146282	C	CGGGCTGGCT	464.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:88,15:0.15:103
chr2	233404590	rs12996322	G	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:64,15:0.19:79
chr2	233407120	rs2853462	C	T	4124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=-0.635;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:78,189:0.71:267
chr2	233408190	rs34697564	A	AC	963.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.843;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.643;QD=5.21;ReadPosRankSum=-1.029;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:131,54:0.29:185
chr2	233408220	rs10714586	AG	A	8405.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	233408239	rs2573206	C	G	9983.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	233408283	rs13018423	C	T	2407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.262;QD=3.92;ReadPosRankSum=-0.292;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:450,164:0.27:614
chr2	233409013	rs2250451	G	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr2	233414341	rs4973540	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr2	233415978	rs11899983	T	C	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:254,107:0.30:361
chr2	233421284	rs3830645	CT	C	1163.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:126,63:0.33:189
chr2	233438786	rs2293338	G	A	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr2	233470843	rs7571133	G	A	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.462;QD=4.97;ReadPosRankSum=-1.266;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:186,88:0.32:274
chr2	233470900	rs55750809	TC	T	2301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.461;QD=7.62;ReadPosRankSum=2.202;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:205,97:0.32:302
chr2	233470931	rs10171498	C	G	1545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-0.423;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:177,92:0.34:269
chr2	233498669	rs2276557	G	T	4615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=1.534;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:80,210:0.72:290
chr2	233536926	rs11684420	T	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr2	233537125	rs11550699	A	G	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:58,140:0.71:198
chr2	233599904	rs11555646	A	C	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:55,89:0.62:144
chr2	233620907	.	C	CTT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=4.036;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.973;QD=5.36;ReadPosRankSum=-0.953;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr2	233630676	rs77237820	C	T	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:81,140:0.63:221
chr2	233633460	rs1801251	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:35,70:0.67:105
chr2	233641083	rs737027	G	C	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:52,118:0.69:170
chr2	233708806	rs3816334	A	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:198,83:0.30:281
chr2	233710713	rs4973054	G	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	233712049	rs2305137	G	A	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.160;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr2	233712226	rs10555297	CACA	C	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:98,22:0.18:120
chr2	233721455	rs1947105	G	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-1.653;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:98,35:0.26:133
chr2	233723182	rs1284	G	A	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	233740227	rs778338	A	G	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:134,68:0.34:202
chr2	233744130	rs58821056	GCC	G	378.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=0.275;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	233744133	.	C	G	387.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	233752944	rs72427034	ACACG	A	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:137,48:0.26:185
chr2	233757679	rs748002	G	A	1512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.204;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:285,102:0.26:387
chr2	233757697	rs895432	A	G	10767.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,421:1.00:421
chr2	233759695	rs938569	G	C	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-0.972;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:125,65:0.34:190
chr2	233785015	rs778354	G	A	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	233791608	rs1878289	C	G	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr2	233791648	rs2592127	G	T	5555.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:76,245:0.76:321
chr2	233834975	rs4973588	A	G	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	233880271	rs60652209	A	G	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr2	233899126	rs2233391	C	A	20634.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,788:1.00:788
chr2	233925491	rs4246649	A	G	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	233990412	rs55913569	C	T	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	233997595	.	A	ATT	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.070;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:25,48:0.66:73
chr2	234054873	rs1135173	G	A	19629.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,755:1.00:755
chr2	234070171	rs28605534	G	C	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	234070190	rs28609111	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	234070233	rs28576692	T	C	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	234072626	rs141642539	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	234078056	rs11386687	AC	A	6551.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	234078140	rs35982395	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr2	234078582	rs10754947	G	A	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	234091158	rs4571051	T	C	3660.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:80,175:0.69:255
chr2	234160345	rs2289477	T	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:57,16:0.22:73
chr2	234160669	rs10199278	C	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	234173503	rs12994997	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.56;ReadPosRankSum=1.471;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	234178624	rs35705047	CT	C	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=1.283;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:21,43:0.67:64
chr2	234178781	rs72400208	A	AT	578.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-1.617;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:13,38:0.75:51
chr2	234181593	rs2289475	G	C	7082.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	234182240	rs2289472	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.950;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:64,21:0.25:85
chr2	234183368	rs2241880	A	G	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.122;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:193,62:0.24:255
chr2	234183468	rs2241879	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chr2	234184417	rs3792109	G	A	1978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.380;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-1.179;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:338,138:0.29:476
chr2	234197717	rs4663136	C	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	234201700	rs4663421	G	C	125.85	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	234224643	rs181158151	G	C	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,48:0.79:61
chr2	234227523	rs2304777	A	G	6741.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr2	234227693	rs2304776	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:79,20:0.20:99
chr2	234229480	rs74356516	C	T	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,81:0.69:117
chr2	234235749	rs2304774	G	C	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:109,65:0.37:174
chr2	234238254	rs745498	T	G	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	234255145	rs35371121	A	C	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=1.221;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:128,52:0.29:180
chr2	234255547	rs1046974	G	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.095;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:184,49:0.21:233
chr2	234294561	rs3075537	T	TTC	11778.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	234294791	rs838716	G	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=2.184;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	234368715	.	TA	T	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=5.053;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.677;QD=1.06;ReadPosRankSum=0.513;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr2	234375944	rs2305540	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	234436069	rs36075906	C	T	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	234438246	rs56828432	C	CT	2555.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=36.00;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	234438354	rs12692193	C	T	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	234442437	rs11332355	CA	C	34.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.210;QD=5.75;ReadPosRankSum=-0.210;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	234449316	rs2167884	G	A	3500.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.439;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.65;ReadPosRankSum=1.726;SOR=0.229;set=HC	GT:AD:AF:DP	1/1:1,141:0.99:142
chr2	234449462	rs1545525	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	234450822	rs1901812	T	C	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	234457900	rs3965793	T	A	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	234469664	rs6753062	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	234526871	rs1042597	C	G	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	234627937	rs2011404	T	C	8480.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr2	234678110	.	CGT	C	80	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=3;NR=2;PP=80;QD=18.0;SC=CATTCATATGCGTGTGTGTGT;SbPval=0.27;Source=Platypus;TC=27;TCF=10;TCR=17;TR=5;WE=234678119;WS=234678100;set=Platypus	GT:AD:AF:DP	1/0:22,5:0.19:27
chr2	234688036	rs6431631	C	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	234704150	rs2885297	T	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	234704607	rs1076454	C	T	9540.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr2	234704690	rs759173	T	C	6339.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	234704746	rs759172	G	C	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	234707341	rs1500479	T	C	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	234708428	rs13013882	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	234708570	rs11563069	G	A	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	234708629	rs13018934	G	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	234708720	rs2041652	T	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	234708824	rs55686299	T	G	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	234709000	rs11563245	C	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	234710831	rs10929306	G	C	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	234711008	rs741158	G	T	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	234712652	rs11562982	C	A	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	234713571	rs11563242	C	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	234713706	rs4430949	T	C	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	234713812	rs2041651	G	T	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	234716309	rs6716876	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	234716426	rs11563241	G	A	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	234717669	rs10803663	A	G	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr2	234720734	rs988344	A	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	234725502	rs726016	T	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	234726616	rs6756004	A	T	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	234728078	rs1500480	T	C	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	234730807	rs6734083	G	A	10815.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr2	234732317	rs11676792	A	G	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	234737372	rs7564261	C	A	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	234738175	rs502059	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	234738472	rs582432	G	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	234740136	rs879665	G	A	12331.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,483:1.00:483
chr2	234740157	rs879664	G	A	12823.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr2	234740310	rs879666	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	234740758	rs213547	A	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	234740797	rs76276350	C	CAAAA	2346.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.01;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	234740798	rs3064782	T	A	2355.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	234740985	rs474242	G	A	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	234740985	.	GGC	AGG	2023	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=4;HapScore=1;MGOF=50;MMLQ=27;MQ=60.0;NF=28;NR=29;PP=2023;QD=36.4292609625;SC=AGTCCACCCCGGCACTCGGGG;SbPval=0.5;Source=Platypus;TC=60;TCF=30;TCR=30;TR=57;WE=234740995;WS=234740975;set=Platypus	GT:AD:AF:DP	1/1:3,57:0.95:60
chr2	234740987	rs658482	C	G	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	234741022	rs122856	T	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	234741028	rs5839496	A	AG	2556.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	234749151	rs213555	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	234749258	rs10511	T	C	11045.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr2	234749354	rs12582	G	A	6676.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr2	234749780	rs3821238	G	C	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	234750542	rs3732215	G	C	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	234750831	rs3806589	T	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	234752638	rs7583713	C	T	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	234753008	rs169925	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	234754273	rs2302156	T	C	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	234754506	rs2302155	G	A	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	234756240	rs2286431	G	A	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	234761225	rs2286430	C	T	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	234761355	rs554699	G	A	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	234762480	rs626110	A	T	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	234762946	rs34087988	C	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	234763226	rs503913	C	T	7827.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=3.153;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-0.710;SOR=0.338;set=HC	GT:AD:AF:DP	1/1:1,309:1.00:310
chr2	234846198	rs1019103	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	234847573	rs9646720	A	G	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	234847823	rs2302153	A	C	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	234854540	rs13004520	G	C	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	234854552	rs17868387	A	G	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	234863788	rs7593557	G	A	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	234873123	rs28953468	G	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.45;QD=27.29;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	234875433	rs12185625	A	G	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	234878261	rs6760498	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	234888643	rs6745987	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	234892127	rs4663995	T	C	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	234915540	rs11563071	C	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	234916771	rs11450151	A	AT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.023;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr2	234916831	rs6734618	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	234923124	rs3732214	A	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.63;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	234923170	rs11562948	A	G	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	234967539	rs593668	T	A	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	236403607	rs3738998	C	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	236433161	rs62191529	G	A	7742.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.668;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=1.334;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:1,301:1.00:302
chr2	236433331	rs11689907	T	C	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	236433390	rs10207027	G	A	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	236716006	rs8178996	T	A	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	236761414	rs142341634	C	CCAGG	7394.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	236817336	rs57795387	CT	C	1224.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.530;QD=10.55;ReadPosRankSum=2.381;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:19,97:0.84:116
chr2	236923361	rs35361765	C	CT	1692.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.90;ReadPosRankSum=2.657;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:3,78:0.96:81
chr2	236957822	rs2034648	G	A	13283.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.59;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr2	237029163	rs13021559	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	237146643	rs72060634	TGTG	T	1853.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	237149941	rs6756597	C	T	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	237150166	rs2015983	A	C	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	237412168	rs75481888	A	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	237412399	rs4427967	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	238005370	rs11333953	GT	G	736.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	238005572	rs28631187	G	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.82;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	238006229	rs72975809	G	T	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	238166147	rs4377288	G	A	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.13;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	238243292	rs1131296	G	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	238243464	rs2270669	C	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	238244963	rs6728818	A	G	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	238249630	rs4433949	C	T	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	238258814	rs3790993	C	G	11125.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr2	238259675	rs3790995	G	A	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	238261112	rs4663726	GC	AA	7973.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	238266248	rs7577192	G	C	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	238266633	rs4663730	G	A	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	238267058	rs4663731	G	A	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	238283605	rs12622093	G	A	17245.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,672:1.00:672
chr2	238287313	rs115387170	A	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	238303906	rs2645778	A	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	238305211	rs1553032	C	T	129.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	238419543	rs71887544	CGT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.310;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:61,13:0.18:74
chr2	238667501	rs3215064	G	GA	959.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	238688244	rs1151798	A	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	238820048	rs7582777	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	238894784	rs66771814	CT	C	273.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-1.082;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr2	238896494	rs59213280	C	CA	154.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=1.193;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr2	238903310	rs10203101	C	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	238912120	rs10929262	A	C	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	238939370	rs11679080	C	T	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	238972827	rs821480	T	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	238990388	rs3210400	G	A	7398.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.14;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr2	238991796	rs2278742	C	T	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	239002480	rs72316729	CTTG	C	6561.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=44.34;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	239007755	rs68159827	CATT	C	2662.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	239007806	rs1054640	A	G	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	239007850	rs1054641	T	A	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	239007991	rs15787	T	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	239009336	rs61744770	G	A	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	239009384	rs62196013	C	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	239010455	rs5839683	GGAA	G	753.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	239010577	rs1562333	G	C	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=25.09;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	239010719	rs36066915	T	C	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	239016539	rs935415	C	G	11732.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,456:1.00:456
chr2	239025523	rs11903074	T	C	6672.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr2	239036416	rs12692214	T	C	12366.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.35;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	239036423	rs62197371	C	A	11725.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.63;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	239037568	rs147504541	A	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	239039057	rs13033248	A	G	7945.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr2	239039075	rs13006204	G	T	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	239039637	rs4663845	T	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	239039841	rs10172220	A	G	8196.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr2	239039896	rs10182906	G	C	13513.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr2	239040187	rs12692215	T	C	7601.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	239049540	rs2241985	G	A	14036.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr2	239050033	rs12692216	C	T	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr2	239051550	rs935411	T	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	239053436	rs12623661	G	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	239053685	rs13013945	A	C	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr2	239054504	rs11674140	G	T	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	239056746	rs11674655	T	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	239059484	rs7605194	T	C	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	239073046	rs6760421	C	T	9467.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr2	239075812	rs3795905	C	T	5953.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.189;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.70;ReadPosRankSum=-0.954;SOR=0.369;set=HC	GT:AD:AF:DP	1/1:1,222:1.00:223
chr2	239075935	rs3820817	A	G	7221.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	239082166	rs3832064	G	GC	5451.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	239092474	rs2305173	C	T	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	239093788	rs6431588	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	239102856	rs3795903	A	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	239103574	rs35393292	G	A	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	239103603	rs7558210	C	G	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	239112344	rs113428548	G	A	232.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	239148535	rs1047589	G	C	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.44;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	239148970	rs56294817	C	A	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	239161900	.	G	T	1272.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:11,57:0.84:68
chr2	239229372	rs13398676	C	A	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	239237953	rs12464423	G	T	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	239242719	.	G	GTT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	239307245	rs571820	A	G	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	239976697	rs113824469	T	TTATTA	471.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	239990521	.	A	AGTGCAAGCCAGCAAGCCCCACGACACTTGCTTAGTGAGAGTGAGTCACG	16383.73	.	AC=2;AF=1.00;AN=2;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.78;QD=43.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr2	239990592	.	TG	GA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=1;MGOF=37;MMLQ=23;MQ=48.88;NF=53;NR=83;PP=2947;QD=20;SC=CAAGCCCCACTGCACTTGCTT;SbPval=0.56;Source=Platypus;TC=150;TCF=60;TCR=90;TR=136;WE=239990601;WS=239990582;set=Platypus	GT:AD:AF:DP	1/1:14,136:0.91:150
chr2	240009199	rs62189546	G	A	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	240011717	rs61752234	T	C	12061.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,466:1.00:466
chr2	240016488	rs62189551	A	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	240029736	rs7585225	T	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	240055901	rs2278778	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	240066417	rs2290087	A	G	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	240066526	rs2290088	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	240078587	rs5839723	GAC	G	2451.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	240083528	rs3791515	G	A	14309.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,562:1.00:562
chr2	240083731	rs3828216	C	T	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	240085403	rs11124182	C	A	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	240085674	rs13010577	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	240111477	rs531993	A	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	240111870	rs74761897	CG	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.043;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	240219669	rs11696099	C	T	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	240323661	rs1709851	C	A	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr2	240323905	rs3215239	T	TG	5200.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	240500170	rs35846411	G	A	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	240500294	rs11683242	A	C	10502.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr2	240500413	rs6543554	A	G	8861.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr2	240504878	rs6719279	C	T	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	240504931	rs13021357	A	G	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	240702216	rs11884577	C	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	240721384	rs2898872	C	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	240981179	rs6731916	T	C	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	240981262	rs6728493	A	C	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	240981375	rs6732185	T	A	9669.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr2	240981487	rs60617721	A	G	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	240982271	.	G	A	882	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=2;HapScore=1;MGOF=73;MMLQ=23;NF=23;NR=25;PP=882;QD=19.0994002614;SC=GTGAAGAGCCGTGGATGAAGG;SbPval=0.57;Source=Platypus;TC=50;TCF=24;TCR=26;TR=48;WE=240982279;WS=240982237;set=Platypus	GT:AD:AF:DP	1/1:2,48:0.96:50
chr2	240982443	rs34596708	C	T	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	240982449	rs35318485	C	T	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	240984789	rs12465491	C	T	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	240985099	rs150098707	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	240985347	rs13030992	G	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.92;QD=27.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	240985511	rs10933560	A	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	241066280	rs4292120	C	T	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	241066325	rs12614632	A	C	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	241075809	rs13406410	C	T	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	241078784	rs2279690	A	T	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	241375527	rs2352823	C	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	241389219	rs13421123	G	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	241390002	rs3828334	A	G	10425.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr2	241392491	rs4268920	A	G	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	241395353	rs12695019	A	G	348.96	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr2	241395503	rs2292832	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	241396765	rs10933605	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	241396969	rs11680576	T	C	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	241397326	rs13430967	G	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.21;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	241397331	rs13390118	C	G	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.26;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	241403955	rs3830536	GTGACGCCTGCGTGTGCGTGTCAACGCCTGTGTGCGCGCGT	G	8501.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	241404317	rs2229458	C	T	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	241404499	rs2228327	C	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	241405400	rs10700206	C	CGTG	577.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	241405454	rs6760745	G	A	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	241405528	rs2228331	A	G	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.31;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	241419090	rs73010211	G	A	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	241451351	rs35044862	G	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	241465361	rs68048482	T	C	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	241492255	rs4676428	G	T	7829.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr2	241496841	rs12465325	C	G	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	241500674	rs4676426	C	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	241500896	rs1128149	C	T	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	241512049	rs2975769	C	A	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	241512470	rs2001823	G	T	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	241526259	rs55650580	T	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	241526556	rs60704894	G	T	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr2	241528927	rs55893551	G	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	241528968	rs55976923	G	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	241531479	rs3792269	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	241531584	rs2975761	G	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	241533512	rs17846970	T	A	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	241533559	rs17846971	C	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	241533845	rs2975763	T	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr2	241534163	rs17846975	G	A	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	241536053	rs2953171	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	241536126	rs7607759	A	G	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	241537569	rs17846981	T	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	241538061	rs55878652	T	C	5926.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	241538074	rs2975766	A	G	5741.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	241538229	rs2975767	A	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	241569329	rs2975785	A	G	5740.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	241570249	rs3749172	A	C	9074.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:2,361:0.99:363
chr2	241570391	rs2975786	A	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	241619674	rs202221536	C	T	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.51;QD=23.99;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	241619686	rs200371460	C	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.53;QD=23.13;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	241621799	rs201917032	GC	G	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.69;QD=33.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	241622195	rs184458523	T	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	241622209	rs4081908	T	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	241627928	rs1560619	A	G	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	241631459	rs5021966	T	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.528;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=24.212;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-10.503;QD=0.92;ReadPosRankSum=-3.409;SOR=3.686;set=HC	GT:AD:AF:DP	0/1:119,14:0.11:133
chr2	241631461	rs5839795	CG	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.207;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=21.100;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-9.895;QD=0.83;ReadPosRankSum=-3.715;SOR=3.591;set=HC	GT:AD:AF:DP	0/1:120,14:0.10:134
chr2	241631476	rs4328629	C	G	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	241659368	rs6437368	C	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	241666418	rs2060194	G	A	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	241674222	rs3755533	T	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=23.44;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	241680644	rs1013225	G	C	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	241684660	rs1529665	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	241684692	rs7576602	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	241696840	.	ATCCTCC	A,ATCC	5250.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;QD=39.48;SOR=1.406;set=HC	GT:AD:AF:DP	1/2:0,13,120:0.10,0.90:133
chr2	241702561	rs11688298	T	A	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	241706166	rs10804413	T	A	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=1.562;SOR=2.793;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	241706227	rs11681427	C	T	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	241706874	rs3821346	C	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	241711784	rs3772060	G	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	241722613	rs2288749	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	241725637	rs74002922	G	A	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	241828034	rs6707568	A	G	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	241859255	rs4675790	T	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	241871802	rs146400153	G	A	13722.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,533:1.00:533
chr2	241874559	rs12618707	T	C	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	241904781	rs12467536	C	T	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	241922430	rs4577273	T	C	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	241925343	rs4675835	T	C	7328.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:1,280:1.00:281
chr2	241929228	rs10200024	A	G	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	241932361	rs57109098	A	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	241932596	rs79030630	A	G	8363.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	242004219	rs11464431	T	TG	16628.73	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.45;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr2	242011151	rs6760731	A	G	15891.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,631:1.00:631
chr2	242011330	rs6746124	C	A	23897.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;ClippingRankSum=0.000;DB;DP=975;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=1.927;SOR=0.254;set=HC	GT:AD:AF:DP	1/1:1,938:1.00:939
chr2	242088921	rs3806599	A	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	242099961	rs2017989	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	242129487	rs11695874	G	T	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	242139491	rs2013250	C	T	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	242140785	rs78154103	C	G	17752.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,700:1.00:700
chr2	242141719	rs2074840	C	T	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	242142737	rs1179530	T	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	242149010	rs57677160	C	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	242149073	rs10192730	G	A	231.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	242157353	.	CG	C	739.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.76;QD=28.45;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	242203916	rs11891776	A	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	242658779	rs71351113	A	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	242659554	rs34766121	C	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	242662761	rs7572153	T	C	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	242674803	rs77940364	G	A	8447.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr2	242674959	rs62191977	T	G	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	242680366	rs4073890	A	G	3246.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.17;SOR=1.190;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	242680430	rs4073889	A	G	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr2	242682029	rs78147778	T	C	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	242684115	rs4234097	T	C	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	242684394	rs4675884	G	C	764.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr2	242688203	rs34519321	C	T	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	242688292	rs34767042	C	T	7765.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr2	242688366	rs35386923	C	T	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	242688434	rs34077392	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	242688442	rs35249772	T	TC	1071.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	242688672	rs78280775	C	T	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	242688822	rs139610220	C	T	12328.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr2	242688870	rs113047262	T	C	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	242690675	rs1106639	G	A	12778.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr2	242690770	rs141343442	T	C	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	242695497	rs62192024	T	C	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	242707101	rs6756901	A	G	6641.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	242716380	rs12469459	A	T	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	242750231	rs35392728	T	G	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	242750460	rs34748986	T	C	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	242755465	rs34241734	C	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	242755599	rs66482163	G	A	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	242757334	rs3749152	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	242758179	rs2293764	C	T	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	242758203	rs2293763	T	C	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	242758326	rs2293761	G	A	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	242758475	rs2293759	A	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	242793273	rs2227981	A	G	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	242793559	rs6705653	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	242813124	rs13016102	T	C	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	242813241	rs28392509	C	T	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	242813276	rs62193136	C	T	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	242814009	rs7420371	G	A	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	242836535	rs28559662	A	G	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	242839614	rs13025557	T	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	243037004	rs141745632	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	239313	rs35603824	C	CG	828.37	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:4,34:0.89:38
chr3	239555	rs58240971	C	CT	1094.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=0.913;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:40,86:0.68:126
chr3	361508	rs2272522	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:58,21:0.27:79
chr3	367757	rs162734	G	C	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:183,106:0.37:289
chr3	367825	rs13073026	G	T	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:201,106:0.35:307
chr3	370051	rs62227239	C	T	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.750;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.656;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr3	386247	rs3736632	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-1.314;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr3	386520	rs1499046	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr3	391001	rs2272524	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	391100	rs13060847	A	G	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	403288	rs9824311	G	A	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.90;ReadPosRankSum=-0.816;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr3	403297	rs9839027	C	A	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.64;ReadPosRankSum=0.132;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr3	403308	rs9824442	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr3	403345	rs9846775	A	G	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	404771	rs4684390	C	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	417979	rs3773381	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr3	417994	rs930237	A	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	418089	rs3773380	C	T	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=1.079;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:158,80:0.34:238
chr3	439963	rs6442827	A	G	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	440028	rs6771714	T	C	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	440088	rs6771803	T	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	447069	rs11705894	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	1214847	rs17034784	A	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	1215013	rs7632166	A	C	8957.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr3	1215083	rs13077503	C	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:110,48:0.30:158
chr3	1320271	rs3732517	G	A	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	1369278	rs265776	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr3	1413903	rs3852033	T	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	1415195	rs3765098	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	1415811	rs138076631	TAAAAC	T	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;MQ=60.27;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr3	1424718	rs2291101	G	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:78,86:0.52:164
chr3	1424745	rs4684146	C	T	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:93,116:0.56:209
chr3	1427566	rs72997748	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr3	1427625	rs9820933	C	T	235.89	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr3	2671119	rs1351277	A	T	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.730;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:47,38:0.45:85
chr3	2777622	rs1554198	A	G	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	2908694	rs6789163	A	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.574;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	2968808	rs148044757	T	TA	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr3	2969052	rs12490661	C	T	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	3030223	rs13068264	C	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr3	3067850	rs7629924	A	G	7897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=-0.143;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:129,198:0.61:327
chr3	3067853	rs7639977	G	A	7956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.61;ReadPosRankSum=-0.250;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:134,203:0.60:337
chr3	3076218	rs9845519	G	A	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	3076284	rs6765545	G	C	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	3076443	rs6803232	A	G	7550.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:2,296:0.99:298
chr3	3080527	rs163543	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	3081750	rs6802588	A	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:221,81:0.27:302
chr3	3081825	rs339285	T	C	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	3082025	rs4685596	G	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr3	3084653	rs6800354	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr3	3115478	rs163897	T	C	2424.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.516;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.01;ReadPosRankSum=-1.339;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:1,100:0.99:101
chr3	3137155	rs11389765	A	AT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-1.240;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr3	3139957	rs2290610	T	C	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-2.402;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:147,59:0.29:206
chr3	3143267	rs6771148	G	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	3170792	rs334773	C	T	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	3170910	rs334772	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	3171460	rs334769	C	T	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	3171502	rs334768	C	A	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	3171713	rs113671187	G	GCCTGACT	3667.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	3179262	rs334767	A	T	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	3189279	rs1705805	A	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	3189398	rs1669348	A	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	3192524	rs4183	A	ATAAC	2766.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	3193957	rs1705800	A	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	3196273	rs11300080	AT	A	157.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=17.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	3197871	rs1705789	T	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	3215954	rs1669321	A	G	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	3217128	rs11332452	AT	A	43	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	3221430	rs1672753	C	T	2403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=0.218;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:58,111:0.66:169
chr3	3886580	rs4685689	A	G	8810.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr3	3887093	rs9844909	A	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:199,96:0.33:295
chr3	3887876	rs2120609	T	C	8784.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr3	4110440	rs34308595	T	TAAG	1652.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:8,41:0.84:49
chr3	4403767	rs2819561	A	G	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	4403817	rs2633851	TT	AC	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	4403837	rs2633852	A	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	4404087	rs2819560	A	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	4452737	rs813811	G	A	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	4461569	rs711667	G	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	4461698	rs711666	C	T	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	4508742	rs2819590	C	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=3.817;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:45,28:0.38:73
chr3	4562667	rs1038639	T	G	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	4687470	rs5846330	G	GCT	1004.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr3	4687498	rs41289624	T	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr3	4693656	rs6442894	C	T	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	4693937	rs6442895	G	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr3	4693943	rs28724276	G	A	2339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.85;ReadPosRankSum=1.844;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:22,62:0.74:84
chr3	4693953	rs28592010	G	A	2246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.96;ReadPosRankSum=2.375;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:21,54:0.72:75
chr3	4693959	rs28461825	C	T	2151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.16;ReadPosRankSum=-0.188;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:13,50:0.79:63
chr3	4693977	rs28562557	G	A	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr3	4694010	.	A	C	36	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=4;MGOF=84;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=36;QD=35.3856062736;SC=AAATACACTCAGTCACCTTGC;SbPval=1.0;Source=Platypus;TC=11;TCF=1;TCR=10;TR=2;WE=4694019;WS=4694000;set=Platypus	GT:AD:AF:DP	0/1:9,2:0.18:11
chr3	4694011	rs56896093	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr3	4703657	rs6801737	T	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-1.914;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr3	4712413	rs2306875	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	4716811	rs2306877	A	C	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr3	4722956	rs4684438	A	G	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	4725619	rs3215005	CA	C	1280.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	4732670	rs4685801	G	A	40.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr3	4738774	rs3749382	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr3	4738999	.	G	GGTGTGT	765.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=0.190;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr3	4748193	rs34548572	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr3	4767262	rs7613447	T	C	8324.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr3	4776784	rs11920001	A	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.075;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chr3	4817057	rs6442905	T	C	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr3	4829732	rs13079522	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:203,90:0.31:293
chr3	4856180	rs711631	T	C	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	4856234	rs901854	G	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	4856993	rs6442911	C	G	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	4859725	rs9844268	G	A	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	4867510	rs1051559	A	G	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	4872813	rs5018278	T	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=41.82;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	4872815	rs5018277	T	A	928.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=42.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	4878419	.	CTTTTTTTTTTT	TTTTTTTTTTTT	2768	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=21;HapScore=4;MGOF=10;MMLQ=18;MQ=59.43;NF=3,0;NR=9,2;PP=2768,24;QD=20;SC=GTGACTCAGTCTTTTTTTTTT;SbPval=0.49;Source=Platypus;TC=14;TCF=3;TCR=11;TR=12,2;WE=4878437;WS=4878407;set=Platypus	GT:AD:AF:DP	0/1:24,2:0.08:26
chr3	4878419	rs201029025	CTTTTTTTTTTT	C	562.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr3	4927281	rs4685841	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	4927308	rs6794077	A	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	4940658	rs72170014	CAGAG	C	342.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=-0.000;DB;DP=53;ExcessHet=3.0103;FS=17.404;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-0.000;QD=16.33;ReadPosRankSum=1.363;SOR=3.011;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr3	4942432	rs724135	C	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=0.036;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr3	5021403	rs2271566	C	T	4949.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	5022961	rs13076468	A	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.25;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	5022981	rs34085319	CT	C	924.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.83;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	5024415	rs11398309	A	AT	163.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.19;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	5024771	rs908078	T	C	18259.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,692:1.00:692
chr3	5241223	rs377120	C	T	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	5241309	rs410509	C	A	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr3	5249962	.	G	GT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.351;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:96,34:0.26:130
chr3	5291964	rs150680641	A	G	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=1.234;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr3	6828364	rs1533434	A	G	10275.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr3	6903297	rs3749380	C	T	7082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.378;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-2.285;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:267,338:0.56:605
chr3	6903601	rs342034	A	G	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	6998144	rs17046460	C	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr3	7348129	rs17047071	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	7456675	rs712774	C	T	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	7494245	rs111752136	TTG	T	588.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.096;QD=10.33;ReadPosRankSum=-0.174;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:28,29:0.51:57
chr3	7494417	rs2229902	A	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:78,50:0.39:128
chr3	7503581	rs3817365	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	7620789	rs1485175	T	C	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:161,117:0.42:278
chr3	7678010	rs7611935	G	A	7996.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr3	7678090	rs7612048	G	A	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	8299404	rs145434533	AGAAGGAAGGAAGGAAGGAAGGAAG	A	975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=2.048;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr3	8299641	rs4990797	G	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.468;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=2.439;QD=8.91;ReadPosRankSum=-2.248;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	8543713	rs5846598	G	GT	4512.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	8543757	rs2324625	A	C	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.528;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.616;QD=15.80;ReadPosRankSum=-1.335;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:15,45:0.75:60
chr3	8556617	rs12715649	A	G	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	8556784	rs12715650	A	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	8667896	rs355058	T	C	16843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=1188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=0.586;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:400,778:0.66:1178
chr3	8669367	rs5846608	TG	T	13882.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=3.032;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.186;QD=33.70;ReadPosRankSum=2.769;SOR=0.088;set=HC	GT:AD:AF:DP	1/1:3,409:0.99:412
chr3	8671319	rs142926392	C	CTGACTCACCAGTGGTTCACAGA	4275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.402;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=20.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.49;ReadPosRankSum=1.019;SOR=1.777;set=HC	GT:AD:AF:DP	0/1:107,92:0.46:199
chr3	8675778	rs11131140	T	C	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	8676204	rs3774210	A	G	10190.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr3	8676945	rs3816911	T	C	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	8705555	rs34054872	T	C	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:65,98:0.60:163
chr3	8757311	rs17049469	G	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	8775457	rs2072583	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr3	8775589	rs1974763	C	T	7445.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:218,355:0.62:573
chr3	8784046	rs34044666	C	CA,CAAA	839.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-2.436;SOR=1.002;set=HC	GT:AD:AF:DP	1/2:11,22,26:0.37,0.44:59
chr3	8809184	rs237902	G	A	7963.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:208,359:0.63:567
chr3	8809703	rs2228485	G	A	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	8931984	rs656626	A	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	8932189	rs607531	C	T	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	8943988	rs464302	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.119;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.48;ReadPosRankSum=-0.737;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr3	8955240	rs430781	T	C	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	8955389	rs373572	C	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	8990039	rs34239220	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr3	9005078	rs615967	C	T	2666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=0.051;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:248,153:0.38:401
chr3	9005102	rs34927291	C	T	6060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=0.375;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:156,293:0.65:449
chr3	9034558	rs511815	C	T	10139.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr3	9036010	rs637172	T	G	7948.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr3	9066853	rs421041	T	C	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:284,188:0.40:472
chr3	9069747	rs416685	A	G	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-1.623;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:125,72:0.37:197
chr3	9074617	rs9839715	C	T	355.89	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr3	9089254	rs2244864	C	G	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	9091151	rs610457	C	G	2009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-1.767;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:85,101:0.54:186
chr3	9102112	rs59248524	C	CTTTT	637.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-0.235;QD=27.73;ReadPosRankSum=-0.794;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr3	9102137	rs6775479	G	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	9122948	rs2664089	A	G	5757.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	9123116	rs2669986	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	9123134	rs2664088	A	G	107.88	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr3	9166281	rs735253	G	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr3	9406661	rs2728949	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	9406836	rs1054975	T	C	7826.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	9407022	rs2648536	T	C	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	9408443	rs2648535	A	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	9422210	rs2596916	T	C	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	9425911	rs1129170	G	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	9426330	rs61751573	A	G	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr3	9489767	rs2258735	T	C	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	9495385	rs2648580	A	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.299;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	9543998	rs376667655	AAG	A	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=4.072;QD=0.62;ReadPosRankSum=-0.732;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:355,46:0.11:401
chr3	9547950	rs2625890	G	C	6130.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=1.624;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	9547959	rs2625889	C	T	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.699;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	9727002	rs787836	G	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr3	9730284	rs41278545	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.17;ReadPosRankSum=-0.471;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	9730529	.	G	GT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-0.184;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:239,59:0.20:298
chr3	9743398	rs144534173	TGGAG	T	6321.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	9754334	rs187310	C	T	9899.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr3	9757582	rs369700748	CCCTATGGGCCTCACT	CATGGGCCTCACT,C	1177.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=27;set=Intersection	GT:AF:DP	1/1:1.00:27
chr3	9757586	rs372750511	ATGGGCCTCACTT	A	1180.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	9757598	.	T	A	218	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=11;NR=5;PP=218;QD=15.7982007842;SC=GGGCCTCACTTCCTTCTGCCA;SbPval=0.84;Source=Platypus;TC=19;TCF=11;TCR=8;TR=16;WE=9757606;WS=9757572;set=Platypus	GT:AD:AF:DP	1/1:3,16:0.84:19
chr3	9783147	rs696513	A	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	9803126	rs17252807	A	G	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	9822275	rs3868897	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	9829171	rs2290309	G	A	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	9829226	rs293786	A	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	9841989	rs6443266	A	G	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	9852059	rs34761997	C	CGAT	4012.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	9852148	rs9827444	G	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	9859456	rs3806672	C	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	9867625	rs3732527	C	T	13774.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr3	9868577	rs12490900	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	9870857	rs2290303	G	A	13738.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.738;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.17;ReadPosRankSum=0.988;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:1,524:1.00:525
chr3	9871030	rs2290305	T	G	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	9874670	rs7622954	G	A	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	9874914	rs115917139	C	T	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	9876301	rs13088594	G	T	9923.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr3	9885022	rs3846165	T	C	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	9896351	rs279563	A	G	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	9918861	rs456168	C	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:110,43:0.28:153
chr3	9932337	rs279558	G	C	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:19,58:0.75:77
chr3	9934605	rs279553	T	C	4845.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:108,225:0.68:333
chr3	9935094	rs79555969	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr3	9944133	rs74442656	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr3	9944167	rs279589	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr3	9944937	rs279588	G	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr3	9947864	rs279583	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr3	9947898	rs279582	T	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr3	9947997	rs279581	C	T	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr3	9951038	rs142612801	TAC	T	640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.445;QD=2.05;ReadPosRankSum=1.202;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:255,57:0.18:312
chr3	9952706	rs279572	A	G	5321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-1.040;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:145,257:0.64:402
chr3	9952788	rs279571	T	C	4825.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:105,227:0.68:332
chr3	9956279	rs455863	G	A	4899.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:146,231:0.61:377
chr3	9956894	rs693802	C	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-0.826;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr3	9957455	rs1056286	C	T	3523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.933;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:79,169:0.68:248
chr3	9958947	rs34605147	T	TG	528.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr3	9960070	rs708567	C	T	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:55,109:0.66:164
chr3	9962157	rs783494	T	C	4387.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:108,203:0.65:311
chr3	9962767	rs34198416	TATTC	T	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr3	9962816	rs376511	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.558;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr3	9965713	rs115949142	T	A	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.343;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:331,100:0.23:431
chr3	9969801	rs76234423	G	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr3	9969932	rs57179462	TGG	T	20044.73	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.25;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr3	9970031	rs279549	A	G	18554.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr3	9970442	rs279547	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	9974809	rs76999397	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:130,74:0.36:204
chr3	9975247	rs183956	C	G	6920.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	9976159	rs279552	A	G	11000.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,424:1.00:424
chr3	9979453	rs149631051	C	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	9979660	rs2302786	A	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	9982445	rs55862344	A	G	657.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;MQRankSum=2.597;QD=20.56;ReadPosRankSum=-1.633;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr3	9985457	rs9878047	T	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	9985656	rs3774207	C	T	7000.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr3	9990800	rs59465469	G	C	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	9991101	rs55847233	C	G	10747.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr3	9991163	rs55847610	A	G	10755.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr3	9991388	rs279601	G	C	10699.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr3	10015437	rs3732967	T	C	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	10044457	rs55962400	C	T	20258.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,763:1.00:763
chr3	10044626	rs13088350	T	C	22248.77	.	AC=2;AF=1.00;AN=2;DB;DP=892;set=Intersection	GT:AD:AF:DP	1/1:0,865:1.00:865
chr3	10045030	rs13066757	C	A	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	10049287	rs2272118	T	C	7275.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	10049352	rs2272119	A	G	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	10049922	rs9837460	G	C	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	10073824	rs6414438	G	C	7160.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.13;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	10076008	.	C	CAAA	91.77	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	10076842	rs55973240	CTT	C	2816.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,93:0.98:95
chr3	10076975	rs17032276	A	C	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.98;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	10077023	rs17032277	T	C	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	10077955	rs17032278	A	G	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	10081545	rs17032283	G	C	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	10081631	rs35775868	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr3	10083526	rs201603399	CTT	C	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=1.372;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:13,35:0.73:48
chr3	10084224	rs9879080	C	T	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	10085035	rs803335	G	T	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	10085130	rs9809061	C	G	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	10085406	.	G	T	1004.77	.	AC=1;AF=0.500;AN=2;DP=260;set=Intersection	GT:AD:AF:DP	0/1:182,68:0.27:250
chr3	10085536	rs34046352	A	G	3771.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:204,189:0.48:393
chr3	10085624	rs145762470	G	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr3	10088239	rs201770712	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-1.810;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr3	10088242	rs199726231	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-3.416;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr3	10088266	rs72492997	G	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:90,35:0.28:125
chr3	10088299	rs112887807	C	T	2798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.573;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-5.685;QD=15.05;ReadPosRankSum=-1.224;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:112,74:0.40:186
chr3	10088308	rs72492998	T	C	3018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=54.40;MQRankSum=-6.148;QD=14.58;ReadPosRankSum=-0.725;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:118,89:0.43:207
chr3	10088343	rs73126218	A	G	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:114,105:0.48:219
chr3	10088404	.	C	T	2379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=47.67;MQRankSum=-5.339;QD=20.52;ReadPosRankSum=1.498;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:54,62:0.53:116
chr3	10088407	.	AG	A	2370.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=-5.399;QD=20.98;ReadPosRankSum=1.308;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:52,61:0.54:113
chr3	10088409	rs375350046	TAAG	T	2354.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=47.08;MQRankSum=-5.277;QD=21.80;ReadPosRankSum=0.999;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:48,60:0.56:108
chr3	10088422	rs144167368	C	T	2001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=46.05;MQRankSum=-5.720;QD=23.28;ReadPosRankSum=0.594;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:35,51:0.59:86
chr3	10088443	rs145517746	C	A	1221.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.08;MQRankSum=-4.404;QD=20.71;ReadPosRankSum=1.464;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:27,32:0.54:59
chr3	10088444	rs142624538	A	G	1221.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.03;MQRankSum=-4.126;QD=21.43;ReadPosRankSum=0.967;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr3	10088461	rs150415982	T	C	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.95;MQRankSum=-1.820;QD=12.81;ReadPosRankSum=-1.413;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr3	10089723	rs12330369	G	A	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-2.835;QD=9.28;ReadPosRankSum=2.419;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:82,74:0.47:156
chr3	10089738	rs62245508	A	G	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:88,78:0.47:166
chr3	10089749	rs12330599	T	C	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr3	10089772	rs79830642	C	G	2585.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-3.897;QD=19.15;ReadPosRankSum=0.561;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:67,68:0.50:135
chr3	10089773	rs7615646	A	C,G	4459.77	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=131;set=Intersection	GT:AF:DP	1/2:0.50,0.50:131
chr3	10089775	rs75389047	A	G	2502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-3.965;QD=19.40;ReadPosRankSum=0.787;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:65,64:0.50:129
chr3	10089815	rs77169020	A	C	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-3.576;QD=18.15;ReadPosRankSum=-1.305;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr3	10089818	rs78988497	C	T	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-3.688;QD=18.21;ReadPosRankSum=-1.088;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:39,36:0.48:75
chr3	10089828	rs77263972	G	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-4.471;QD=15.50;ReadPosRankSum=1.544;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr3	10089834	rs74351786	A	T	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.258;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-4.287;QD=15.23;ReadPosRankSum=0.896;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr3	10089841	rs74509181	C	A	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.546;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-3.936;QD=17.34;ReadPosRankSum=-0.502;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr3	10089852	rs75274508	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	10089886	rs73811818	G	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	10091049	rs35557429	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.88;MQRankSum=-1.954;QD=11.32;ReadPosRankSum=0.270;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	10091153	rs35652360	C	T	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.50;QD=24.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	10103931	.	C	CT	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.588;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr3	10106532	rs3864017	C	T	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.81;QD=26.80;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	10107520	rs34608006	G	T	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	10114802	rs9824585	T	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	10119603	rs6792951	C	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	10119917	rs6805869	T	C	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	10128635	rs33972700	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr3	10128965	.	C	CTTT	698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.55;ReadPosRankSum=0.850;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr3	10133949	rs9811771	A	G	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	10134115	rs148249750	A	AT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.036;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr3	10136150	rs7610821	C	T	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	10138069	rs2272125	T	G	7446.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr3	10138189	rs2272124	T	C	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	10140671	rs7626117	G	A	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	10140696	rs7647987	A	G	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	10144778	rs200508989	TAA	T	1902.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:7,71:0.91:78
chr3	10157337	rs7645667	C	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr3	10157368	rs7645759	C	T	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=0.372;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:21,45:0.68:66
chr3	10167264	rs67667957	G	C	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	10167790	rs56274701	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	10186216	rs34232505	T	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	10188428	rs1678607	T	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	10189787	.	G	GA	96.73	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:46,13:0.22:59
chr3	10189929	rs1681660	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	10219510	rs1711109	C	T	7903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=2.377;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:197,375:0.66:572
chr3	10219729	rs1681663	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	10241987	rs263410	A	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	10242243	rs263411	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	10251196	rs459864	A	G	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	10258493	rs2302862	T	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	10258514	rs2302861	T	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.394;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	10258762	rs2302860	G	C	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	10261237	rs3895949	A	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	10261248	rs3895948	T	C	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	10261294	rs3895947	A	G	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	10261594	rs11465911	C	T	1110.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=6.585;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.09;ReadPosRankSum=0.523;SOR=2.617;set=HC	GT:AD:AF:DP	1/1:1,40:0.98:41
chr3	10264480	rs3844283	C	G	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	10276163	rs708035	T	A	9742.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr3	10280753	rs11465932	G	A	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	10283716	rs796552	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	10290839	rs2072577	G	A	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.390;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:126,58:0.32:184
chr3	10302172	rs394558	G	A	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:229,142:0.38:371
chr3	10302369	rs451952	T	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:103,48:0.32:151
chr3	10302395	rs439483	G	C	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.398;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr3	10302479	rs402330	G	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	10318230	rs3217211	A	AT	1236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.633;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:120,48:0.29:168
chr3	10318258	rs200847482	AT	A	1054.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=0.519;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:87,40:0.31:127
chr3	10318275	.	CT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.846;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr3	10320865	rs2075355	A	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr3	10328250	rs35683	A	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-0.337;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr3	10342876	rs696221	C	T	4368.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:139,200:0.59:339
chr3	10346996	rs200033116	T	TA	256.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr3	10370486	rs4327369	G	C	3324.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:93,154:0.62:247
chr3	10379923	rs35678	C	T	7261.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:212,350:0.62:562
chr3	10382111	rs171337	T	C	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:88,129:0.59:217
chr3	10382148	rs154242	G	A	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:100,163:0.62:263
chr3	10442779	rs26797	C	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:130,63:0.33:193
chr3	10885920	rs2304725	T	C	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-1.350;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:107,70:0.40:177
chr3	10967739	rs2272395	T	C	4652.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:111,223:0.67:334
chr3	11060430	rs3817585	G	C	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:34,81:0.70:115
chr3	11075503	rs2246543	T	C	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr3	11300707	rs901865	T	C	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,205:0.99:207
chr3	11518755	rs4684782	T	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	11599949	.	AT	A	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=2.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.365;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:107,26:0.20:133
chr3	11643465	rs2276749	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	11667714	rs3856802	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	11685143	rs34152653	T	TA	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.223;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:15,35:0.70:50
chr3	11744544	rs11411195	G	GA	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=0.274;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	11744584	rs6781438	C	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.071;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	11831953	rs9267	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr3	11848874	rs3796330	G	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr3	11880760	rs7641243	T	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=0.448;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:67,35:0.34:102
chr3	11880816	rs303862	C	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr3	11886365	rs392621	T	C	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	11886451	rs380999	G	A	6713.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	11887991	rs408600	C	G	8607.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr3	11912762	rs113897327	C	T	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.723;MLEAC=1;MLEAF=0.500;MQ=50.29;MQRankSum=-1.354;QD=7.57;ReadPosRankSum=0.534;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:59,38:0.39:97
chr3	11912797	rs62246062	C	T	1982.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.037;MLEAC=2;MLEAF=1.000;MQ=45.78;MQRankSum=-1.496;QD=26.09;ReadPosRankSum=1.079;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:1,75:0.99:76
chr3	11924613	rs369394286	AG	A	676.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.36;QD=27.07;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	11925136	rs423051	T	G	132.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.57;QD=33.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	11925489	rs2470561	C	T	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.32;QD=26.47;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	11925610	rs421090	C	T	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.34;QD=25.32;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	12045891	rs79624759	T	C	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.68;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	12045899	rs77368781	C	T	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.48;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	12045923	rs73135622	A	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	12045986	rs67270413	G	A	10037.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr3	12046013	rs72624441	A	C	14596.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,584:1.00:584
chr3	12046076	rs2618395	T	C	11678.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.50;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,458:1.00:458
chr3	12046168	rs2623875	A	C	40.28	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.40;QD=13.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	12046196	rs2600233	A	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.97;QD=41.30;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	12046207	rs2600234	C	G	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.77;QD=44.91;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	12046215	rs2623876	G	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.46;QD=46.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	12046222	rs71624921	A	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.59;QD=52.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	12046235	.	GTAAGA	G	202.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-0.084;QD=20.27;ReadPosRankSum=2.823;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	12046236	.	T	C	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.559;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=0.084;QD=11.58;ReadPosRankSum=-2.823;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	12046238	.	A	G	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.823;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=0.084;QD=11.58;ReadPosRankSum=-2.823;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	12046239	.	G	C	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=0.084;QD=11.58;ReadPosRankSum=-2.823;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	12046240	.	A	C	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.559;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=0.084;QD=11.58;ReadPosRankSum=-2.823;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	12046241	.	CGCGCCGA	C	203.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.668;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-0.084;QD=20.37;ReadPosRankSum=2.823;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	12046248	.	A	C	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.345;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=0.084;QD=11.58;ReadPosRankSum=-2.593;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	12046251	.	A	C	961.77	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.82;QD=56.57;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	12046256	.	GCCCCCCCCC	G	952.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.05;QD=45.37;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	12046268	.	GCGCGA	G	997.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;QD=43.38;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	12046276	rs71624922	A	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=64.71;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	12046297	rs71624923	A	C	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.34;QD=44.96;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	12046318	rs2923854	G	C	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=45.17;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	12046321	rs2923855	A	G	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=43.90;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	12046362	rs2923856	G	C	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.54;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	12046364	rs2923857	G	C	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.54;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	12046372	rs2623877	G	C	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.61;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	12046445	rs2600235	TT	GC	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	12182240	.	C	T	595.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr3	12202866	rs308950	C	G	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	12208652	rs795008	A	G	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	12208671	rs795009	G	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:56,16:0.22:72
chr3	12229015	rs794999	A	G	5919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=1154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.343;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:767,372:0.33:1139
chr3	12232074	rs310764	A	G	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	12232208	rs310765	T	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	12317739	rs151229409	GAAGGGAGGAAGGA	G	908.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=4.741;QD=7.77;ReadPosRankSum=2.300;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:88,29:0.25:117
chr3	12421089	rs28763893	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr3	12537955	rs299651	T	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr3	12557943	rs76976769	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.86;ReadPosRankSum=0.771;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	12557945	rs66664626	ATGTGTGTGTG	A,GTGTGTGTGTG	418.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/2:0.31,0.69:13
chr3	12560763	rs1618545	A	T	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=0.420;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:30,55:0.65:85
chr3	12570572	rs299632	C	T	1928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-1.049;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:56,93:0.62:149
chr3	12571420	.	G	GT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.324;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr3	12584747	rs111958878	G	GT	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=1.521;QD=9.33;ReadPosRankSum=0.408;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:20,28:0.58:48
chr3	12598525	.	G	GCGGCGTGCGC	1974	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=1;MGOF=13;MMLQ=22;MQ=59.81;NF=1;NR=5;PP=1974;QD=331.333333333;SC=CACCGGAGGGGCGGCGTGCGC;SbPval=0.58;Source=Platypus;TC=22;TCF=3;TCR=19;TR=6;WE=12598533;WS=12598515;set=Platypus	GT:AD:AF:DP	0/1:16,6:0.27:22
chr3	12598783	rs112706793	A	G	4388.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:91,194:0.68:285
chr3	12598839	rs2255655	C	G	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr3	12613866	rs2648307	T	C	2857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=-0.504;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:57,136:0.70:193
chr3	12617996	rs1542848	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr3	12623722	rs34924942	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:85,37:0.30:122
chr3	12626516	rs3729931	G	A	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:61,90:0.60:151
chr3	12628920	rs2290159	G	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr3	12647547	rs3214791	T	TG	323.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	12650482	rs2454440	T	A	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	12660291	rs3729926	C	T	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	12778198	rs111237179	G	A	10836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=855;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=0.636;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:322,524:0.62:846
chr3	12779409	rs2271209	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	12791172	rs937915	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr3	12810629	rs112818257	CCGGGACTGG	C	976.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.78;ReadPosRankSum=0.351;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,26:0.50:52
chr3	12810755	rs7641959	G	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.781;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=0.634;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:24,53:0.69:77
chr3	12810837	rs7619736	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-1.740;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	12838293	rs12631514	G	C	6779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=0.105;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:144,320:0.69:464
chr3	12845158	rs9835677	G	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:30,69:0.70:99
chr3	12845166	rs75214970	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,28:0.30:92
chr3	12848822	rs11718898	T	C	3566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-1.042;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:70,165:0.70:235
chr3	12849011	rs34529773	TA	T	548.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr3	12849031	rs59302336	C	CA	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=2.094;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr3	12856856	rs2305398	A	G	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:111,207:0.65:318
chr3	12857493	rs2305397	C	T	4990.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:140,239:0.63:379
chr3	12857823	rs731646	C	T	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:78,125:0.62:203
chr3	12858028	rs3732675	T	C	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:134,193:0.59:327
chr3	12859004	rs3732678	A	C	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:116,166:0.59:282
chr3	12861586	rs4684883	T	C	5449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DB;DP=985;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=0.620;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:651,328:0.34:979
chr3	12861608	rs3817121	G	A	6308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DB;DP=1145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-1.179;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:756,380:0.33:1136
chr3	12875443	rs12629133	G	A	9382.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr3	12941081	rs114068832	G	A	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:36,88:0.71:124
chr3	12942408	rs9818523	G	A	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:109,184:0.63:293
chr3	12942850	rs56387830	GC	G	5506.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	12954868	rs2600322	A	G	6371.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	12956531	rs2255964	G	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	12976863	rs2600206	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	13359433	rs354477	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr3	13361238	rs2276748	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.155;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:131,42:0.24:173
chr3	13361287	rs354478	C	T	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.709;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:138,57:0.29:195
chr3	13361391	rs354479	A	G	6968.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	13364876	rs514084	G	T	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:253,111:0.30:364
chr3	13367406	rs665064	C	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:127,61:0.32:188
chr3	13368892	rs2271509	G	A	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:41,102:0.71:143
chr3	13379400	rs3773302	C	T	6262.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:218,305:0.58:523
chr3	13379452	rs3773301	G	A	5129.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:189,258:0.58:447
chr3	13383540	rs2271504	A	G	6754.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:139,300:0.68:439
chr3	13383649	rs74442162	G	A	4151.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:92,188:0.67:280
chr3	13393166	rs11292029	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.926;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr3	13395475	rs2280085	G	C	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:76,145:0.66:221
chr3	13395579	rs2280084	C	A	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:68,194:0.74:262
chr3	13407556	rs3732671	T	C	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:88,175:0.67:263
chr3	13415146	rs6810356	G	T	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:48,112:0.70:160
chr3	13418086	rs6442377	C	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr3	13420624	rs6442378	G	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr3	13421024	rs56356701	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr3	13421150	rs7628051	C	T	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:95,180:0.65:275
chr3	13421320	rs7625586	T	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr3	13438830	rs13066607	A	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	13523010	rs2655218	T	C	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:39,82:0.68:121
chr3	13523057	rs3732670	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr3	13539850	rs75944917	C	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr3	13574068	rs35913726	AC	A	657.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr3	13611850	rs3732668	T	C	4715.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:145,227:0.61:372
chr3	13612936	rs3732666	A	G	7070.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:249,332:0.57:581
chr3	13649762	rs2276747	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr3	13655682	rs3773270	C	T	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:65,155:0.70:220
chr3	13659897	rs4596126	A	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr3	13661047	rs2280304	A	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	13669537	rs1966825	T	G	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	13670481	rs2242023	A	G	11270.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:1,437:1.00:438
chr3	13670536	rs9843344	A	G	10702.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr3	13670776	rs4684968	T	C	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	13670837	rs4684969	T	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	13679688	rs1061390	T	A	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-1.565;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:139,43:0.24:182
chr3	13679695	rs1061398	C	A	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-1.033;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:148,47:0.24:195
chr3	13679708	rs12968	C	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:148,53:0.26:201
chr3	13679829	rs7820	C	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr3	13679850	rs71773469	TTA	T	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr3	13916407	rs3749319	G	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:80,41:0.34:121
chr3	14105882	rs4684179	C	A	1440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-2.657;QD=2.71;ReadPosRankSum=3.037;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:412,119:0.22:531
chr3	14106310	.	T	TCCAGCACCAGCAGTC	5165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=1.324;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:337,121:0.26:458
chr3	14106499	rs2607779	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:132,68:0.34:200
chr3	14154231	rs2731316	T	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr3	14158220	rs2731313	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr3	14173963	rs4685074	G	T	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:202,125:0.38:327
chr3	14174146	rs4685075	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,32:0.31:104
chr3	14174427	rs4685076	A	T	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.018;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:200,99:0.33:299
chr3	14175262	rs2340917	T	C	2722.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:264,157:0.37:421
chr3	14176446	rs6766740	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr3	14187449	rs2228001	G	T	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	14187699	rs2733532	T	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	14187710	rs3731175	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=1.259;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr3	14188700	rs2733533	C	A	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:163,95:0.37:258
chr3	14188762	rs2733534	G	C	4618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.413;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:511,273:0.35:784
chr3	14189340	rs2607749	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:58,31:0.35:89
chr3	14190237	rs2279017	T	G	10941.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr3	14190268	rs2470353	G	C	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:289,159:0.35:448
chr3	14193889	rs2227998	C	T	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:467,221:0.32:688
chr3	14197987	rs2958057	A	T	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	14200473	rs3731127	G	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	14201352	rs3731125	T	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr3	14201400	rs3731124	T	G	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-0.695;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	14208625	rs3729587	G	C	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:115,75:0.39:190
chr3	14211865	rs3731081	C	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=1.693;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr3	14220095	rs2607775	C	G	9995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=1577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-1.256;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:995,570:0.36:1565
chr3	14526538	rs1062540	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr3	14526612	rs35363110	AT	A	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-0.979;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr3	14526656	rs1126666	A	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr3	14526667	rs138405130	C	CGTGT	135.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr3	14537867	rs11918344	A	G	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr3	14538072	rs11333211	CA	C	12111.73	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr3	14548494	rs2276755	A	G	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:110,180:0.62:290
chr3	14551444	rs9845816	A	G	10051.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr3	14552994	rs4685168	A	G	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	14554476	rs4516597	T	C	2313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-1.581;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:69,109:0.61:178
chr3	14555009	rs4685170	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	14555216	rs4685171	T	C	7438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=0.349;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:205,359:0.64:564
chr3	14555367	rs4685172	T	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr3	14555717	rs74558668	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:89,48:0.35:137
chr3	14555739	rs4361268	G	A	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:62,130:0.68:192
chr3	14555758	rs138623401	C	CAGTT	5545.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:70,135:0.66:205
chr3	14555811	rs4613440	A	G	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:83,174:0.68:257
chr3	14559258	rs9870394	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr3	14561627	rs5846840	A	AG	1345.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	14562127	rs1106333	C	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:107,41:0.28:148
chr3	14563237	rs7645232	G	A	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:137,116:0.46:253
chr3	14563258	rs4234526	A	G	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:89,100:0.53:189
chr3	14564660	.	A	G	3052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.892;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:115,153:0.57:268
chr3	14565017	rs4685173	G	A	3172.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:75,153:0.67:228
chr3	14702982	rs2276754	C	A	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr3	14703297	rs9840626	C	G,T	7007.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=22.53;SOR=0.851;set=HC	GT:AD:AF:DP	1/2:0,216,95:0.69,0.31:311
chr3	14706745	rs142447115	T	TATTG	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	14708918	rs2280383	A	G	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,135:0.99:136
chr3	14712473	rs1901	G	A	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	14724413	rs9821143	G	A	19524.77	.	AC=2;AF=1.00;AN=2;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,733:1.00:733
chr3	14725668	rs12488352	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	14756730	rs9869372	A	G	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	14768534	rs7636830	A	G	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	14863060	rs17038795	G	A	5108.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:184,245:0.57:429
chr3	14905513	rs172429	T	G	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	14939198	rs2117775	G	A	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	14939364	rs2117774	G	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	14939479	rs2164356	G	T	11602.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr3	14939679	rs2307090	G	A	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	14942024	rs2307088	T	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.934;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr3	14942675	rs293906	G	A	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	14949268	rs9818644	C	T	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	14960170	rs293916	T	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr3	14965466	rs4685234	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:85,42:0.33:127
chr3	14965507	rs4685235	A	G	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr3	15076143	rs62240391	C	T	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.476;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:308,129:0.30:437
chr3	15080696	rs2230444	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.184;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:100,43:0.30:143
chr3	15115270	rs3831	G	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr3	15127522	rs72400013	CTAG	C	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:48,14:0.23:62
chr3	15127598	.	CAA	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.89;ReadPosRankSum=1.712;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	15133088	rs9869512	C	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:102,52:0.34:154
chr3	15219102	.	G	A	949.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr3	15311325	rs1287467	A	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:92,54:0.37:146
chr3	15345924	rs9828229	G	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:45,16:0.26:61
chr3	15371819	rs3773464	C	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	15455717	rs2290537	A	G	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=1.490;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	15456550	rs148072600	A	AAAAC	1634.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr3	15466373	rs73144111	T	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr3	15498261	rs11128745	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	15498272	rs12494919	G	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	15507761	rs3732722	G	A	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	15509212	rs878946	T	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	15509327	rs878945	C	G	7898.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr3	15515695	rs2305616	C	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	15515918	rs28632773	C	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	15516481	rs924812	T	C	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	15516910	rs3816526	T	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	15517025	rs2305615	G	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	15518731	rs2305612	G	C	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	15518841	rs13095087	G	A	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	15518889	rs13074638	T	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	15520639	rs2290538	T	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr3	15520677	rs2255897	G	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	15529543	rs1983085	T	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	15539976	rs141810796	C	CCACACA	3993.73	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:429,151:0.26:580
chr3	15610070	rs905650	C	T	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.282;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:126,51:0.29:177
chr3	15613279	rs200924343	T	TA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.929;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.182;QD=2.09;ReadPosRankSum=2.597;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr3	15643043	rs2019160	A	G	23748.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=927;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.98;ReadPosRankSum=-1.660;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:2,912:1.00:914
chr3	15717614	rs17041435	G	A	1774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=-1.481;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:40,79:0.66:119
chr3	15717693	rs2246960	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr3	15718652	rs2470540	T	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr3	15736385	rs2455814	A	T	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr3	15737610	rs2470547	T	C	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:71,123:0.63:194
chr3	15737689	rs2470548	G	A	9199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.65;ReadPosRankSum=2.896;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:155,234:0.60:389
chr3	15737698	rs2470549	T	C	9377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=1.384;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:153,241:0.61:394
chr3	15752830	rs2455833	T	C	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=0.000;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr3	15753641	rs2455834	A	G	1765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=0.851;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:47,87:0.65:134
chr3	15756215	rs924754	A	T	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-2.280;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr3	15807725	rs6789076	T	A	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,66:0.66:100
chr3	15838150	rs34139082	G	GTT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.22;ReadPosRankSum=1.068;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	15900950	.	C	CGCCGCT	5559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DP=740;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=2.568;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:219,288:0.57:507
chr3	15900973	rs62243667	A	C	12144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.39;ReadPosRankSum=1.494;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:197,301:0.60:498
chr3	15901053	rs71064238	CT	C	3137.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	15901087	.	C	CCCG	515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.866;QD=6.61;ReadPosRankSum=1.808;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr3	16217030	rs148441054	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:148,54:0.27:202
chr3	16261139	rs13063387	G	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	16264037	rs2292169	T	A	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	16268974	rs15767	T	A	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	16268986	rs14576	C	A	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	16269066	rs14210	T	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	16269117	rs1048619	G	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	16305559	rs113442959	A	G	5647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=0.372;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:141,268:0.66:409
chr3	16310857	rs842258	G	A	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr3	16313597	.	CTTT	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=6.597;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=2.18;ReadPosRankSum=0.786;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr3	16358584	rs690241	T	C	11760.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr3	16364919	rs690216	A	C	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	16368121	rs690145	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	16411531	rs17042188	T	C	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=-0.793;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:12,41:0.77:53
chr3	16419352	rs61739728	G	A	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:348,154:0.31:502
chr3	16450872	rs1546650	T	C	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:178,81:0.31:259
chr3	16535229	rs3815962	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr3	16633664	rs57842038	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.44;ReadPosRankSum=0.723;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	16635866	rs13067997	C	G	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	16638467	rs2303591	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.578;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr3	16638963	rs74208885	T	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.165;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:104,45:0.30:149
chr3	16639146	rs74193997	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr3	16639754	rs3773827	G	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr3	16646745	rs9847342	C	G	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr3	16926491	rs6442654	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	16926521	rs200478663	CT	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	16926524	.	CT	C	277.77	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	16926539	.	CT	C	277.77	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.29;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	16926544	rs368284573	T	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	16926548	.	GT	G	143	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	16926551	.	CG	C	143	.	AC=2;AF=1.00;ALERT;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	16926553	.	T	C	152.03	.	AC=2;AF=1.00;ALERT;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	16926557	rs372006934	T	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	16926561	.	CT	C	143	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	16926567	rs373958057	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	16926599	rs7626446	T	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.90;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	16926607	rs7626448	T	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.51;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	16926642	rs6442655	A	G	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	16926648	rs6442656	T	G	4309.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.85;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	16926666	rs7626542	T	G	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.03;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	17051328	rs7653834	T	C	4672.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:113,212:0.65:325
chr3	17053499	rs4602367	A	G	3366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=1.062;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:62,158:0.72:220
chr3	17077268	rs17272796	C	T	2770.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:64,126:0.66:190
chr3	17208267	rs1138454	T	C	6685.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	17275173	rs2060628	G	C	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:123,202:0.62:325
chr3	17279526	rs2060629	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	17300133	rs2596647	A	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	17413531	rs11272495	A	AAAACAAACAAACAAAC	2593.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr3	17470114	rs2121262	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr3	18055231	rs61978649	A	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.097;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:96,34:0.26:130
chr3	18057982	rs9310538	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	18058059	rs9310539	A	G	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-1.051;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:41,33:0.45:74
chr3	18058093	rs62240226	C	G	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.686;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:60,51:0.46:111
chr3	18082839	.	C	CT	60	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=12;HapScore=3;MGOF=3;MMLQ=27;MQ=60.0;NF=1;NR=3;PP=60;QD=16.5;SC=AAACTTTGACCTTTTTTTTTT;SbPval=0.85;Source=Platypus;TC=13;TCF=5;TCR=8;TR=4;WE=18082847;WS=18082829;set=Platypus	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	18308436	rs7432753	A	G	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=2.948;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:77,45:0.37:122
chr3	19190241	rs34370450	G	C	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:241,109:0.31:350
chr3	19388305	rs6768477	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr3	19436587	rs10470642	T	C	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	19556990	rs56353870	AT	A	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.81;ReadPosRankSum=0.487;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	19946992	rs2931394	G	A	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	19959756	rs2929366	G	A	7899.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:2,324:0.99:326
chr3	19961330	rs2931403	C	T	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	19962044	rs13078867	G	A	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	19962223	rs13079262	G	A	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	19974700	rs2929350	T	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	19975215	rs17795400	C	A	13065.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:3,510:0.99:513
chr3	19975582	rs2929349	A	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	19992432	rs6773437	G	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr3	20017489	rs4858122	G	C	152.03	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	20017489	.	GG	CC	118	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=3;NR=0;PP=118;QD=57.1559582874;SC=AAAGATGCTTGGTAACCATTT;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=3;WE=20017498;WS=20017479;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	20017490	rs4858121	G	C	152.03	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	20025665	rs34961993	G	GA	484.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=21.08;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	20027708	rs11128931	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr3	20042462	rs13093485	G	A	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=0.480;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr3	20042834	rs4103004	C	T	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:110,192:0.64:302
chr3	20053581	rs2686326	C	T	2839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=-0.635;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:83,136:0.62:219
chr3	20113830	rs3021408	G	A	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:93,145:0.61:238
chr3	20113989	rs3749180	C	A	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:49,90:0.65:139
chr3	20114044	rs3828349	T	C	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.23;ReadPosRankSum=-1.121;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr3	20114048	rs3828348	G	A	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.67;ReadPosRankSum=0.561;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr3	20179033	rs200097819	C	CT	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.067;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:218,55:0.20:273
chr3	20188074	rs2686314	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr3	21462754	rs451242	A	G	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	21462787	rs427233	G	A	5181.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	21462880	rs4455340	A	G	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:149,65:0.30:214
chr3	21553315	.	A	AT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.627;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr3	21606027	rs3841545	ATT	A,AT	525.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/1:0.91:22
chr3	23364883	rs9844558	G	A	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	23364918	rs11921580	C	T	1829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=1.092;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:39,87:0.69:126
chr3	23986983	rs7644275	C	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	23996371	rs4858095	T	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.85;ReadPosRankSum=0.009;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr3	24006477	rs4858097	T	A	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	24006726	.	CT	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-1.801;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	24169313	rs2278802	A	T	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:77,143:0.65:220
chr3	24169361	rs1667765	T	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr3	24184995	rs3752874	G	A	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:49,121:0.71:170
chr3	24270289	rs75964684	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr3	24270500	rs3836253	G	GA	114.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	25611472	.	GACACACACACACAC	G,GACAC	548.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.63;MQRankSum=0.789;QD=32.28;ReadPosRankSum=2.312;SOR=1.148;set=HC	GT:AD:AF:DP	1/2:3,5,9:0.29,0.53:17
chr3	25639973	rs11372851	A	AT	282.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr3	25660094	rs3835194	G	GT	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr3	25661557	rs3832214	T	TA	114.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	25671778	rs3736605	C	T	875.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,52:0.36:146
chr3	25674091	rs3736601	C	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.463;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr3	25679738	rs60422476	T	C	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=1.131;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:70,47:0.40:117
chr3	25683930	rs11705878	A	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.363;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr3	25706277	rs10433573	A	C	2103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=0.045;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:293,131:0.31:424
chr3	25775253	rs1488992	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	25775356	rs6550987	A	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:209,92:0.31:301
chr3	25836023	rs9831075	C	T	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr3	25902401	rs4681082	G	C	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;MQ=61.19;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	25904394	rs6550999	T	C	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-3.003;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr3	27184801	rs10865812	T	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	27204052	rs17854381	G	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr3	27233376	rs11926580	G	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr3	27233498	rs11926556	C	A	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:236,109:0.32:345
chr3	27243045	rs17680166	G	C	2398.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:274,144:0.34:418
chr3	27243119	rs17680194	G	A	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:155,73:0.32:228
chr3	27243871	rs34940413	T	C	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=1.090;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:47,27:0.36:74
chr3	27296796	rs1550769	C	G	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.530;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:160,60:0.27:220
chr3	27296822	rs1550768	A	T	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-0.092;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:104,40:0.28:144
chr3	27297684	rs12494667	C	A	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr3	27297816	rs3213930	G	C	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,45:0.43:105
chr3	27326097	rs11129280	G	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr3	27326451	rs10510594	A	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.508;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr3	27326553	rs34894168	AC	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.77;ReadPosRankSum=-0.536;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr3	27332282	rs62255594	C	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.045;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr3	27332820	rs10510592	A	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:101,52:0.34:153
chr3	27350384	rs77257134	G	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-2.187;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:60,21:0.26:81
chr3	27353716	rs552647	C	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr3	27363637	rs11393122	T	TA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-1.037;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr3	27387462	rs56104872	G	GGTAA	681.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.44;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	27387463	rs2370957	C	A	690.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	27394419	rs12494966	T	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	27424718	rs1472256	A	G	10370.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr3	27427616	rs17630711	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	27433397	rs2307035	A	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr3	27463229	rs79251239	C	T	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:91,110:0.55:201
chr3	27494620	rs12639265	A	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr3	27525403	rs148062123	GGGGATGGCGA	G	358.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr3	27759404	rs2581183	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr3	27763405	.	CGCG	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.374;QD=2.95;ReadPosRankSum=0.068;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:60,11:0.15:71
chr3	28304875	.	A	G	625.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr3	28358057	rs11706332	C	T	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	28373462	rs139773536	C	CA	4437.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.03;ReadPosRankSum=-0.284;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:7,204:0.97:211
chr3	28381887	rs3762797	A	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	28520417	rs1563656	T	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr3	28533458	rs13099814	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	28557092	rs116119735	C	G	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.841;QD=7.37;ReadPosRankSum=-0.529;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:41,31:0.43:72
chr3	28557206	.	CTG	CTGTG,C	124.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=17;set=Intersection	GT:AF:DP	0/1:0.50:10
chr3	29224786	rs11919232	T	C	43.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	29476428	rs3773018	G	A	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr3	29529907	rs2371695	G	A	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.80;ReadPosRankSum=1.410;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr3	29529913	rs5847572	TTC	T	936.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=1.528;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:25,26:0.51:51
chr3	29530072	rs79955498	C	A	1401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=2.089;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:156,81:0.34:237
chr3	29781187	rs13322661	T	C	3484.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:74,161:0.69:235
chr3	29781465	.	CA	C	33.50	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr3	29977739	rs1449287	T	C	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.575;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=6.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.263;SOR=1.268;set=HC	GT:AD:AF:DP	0/1:117,35:0.23:152
chr3	30029724	rs1868491	C	T	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:59,136:0.70:195
chr3	30032470	rs3773125	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	30045473	.	G	GT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.398;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr3	30045552	rs55920068	CAATT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.29;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	30686414	rs1155705	A	G	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:55,133:0.71:188
chr3	30732821	rs2276767	C	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.12;ReadPosRankSum=-0.339;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	30842298	rs71773602	GACACAC	G,GAC	676.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	1/2:0.65,0.35:17
chr3	30842346	rs10553550	AAGAG	A	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.330;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.679;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr3	30842597	rs59931065	A	AT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.86;ReadPosRankSum=0.282;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	30885806	rs1494738	T	C	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:261,130:0.33:391
chr3	30896104	rs35173001	TTAAA	T	1290.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr3	31621228	rs58289734	T	TAAA	476.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	31642037	rs11713598	A	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr3	31663515	rs10662891	A	AGTGTG	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	31677395	rs11129457	T	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	31703464	rs11058	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr3	31712176	rs3749406	G	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr3	31712393	rs3749405	C	T	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:232,128:0.36:360
chr3	31725316	rs2278959	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:239,108:0.31:347
chr3	31725478	rs17027957	G	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:149,77:0.34:226
chr3	31725691	rs2278960	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=2.510;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr3	31839135	rs7653447	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	31839242	rs7643025	T	C	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-0.295;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:169,85:0.33:254
chr3	32022333	rs10610936	GCACA	G	323.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr3	32030544	rs11129475	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr3	32031024	rs4449357	C	T	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:104,59:0.36:163
chr3	32031135	rs6419811	A	G	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:195,101:0.34:296
chr3	32031615	rs13064905	A	C	5488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.982;QD=12.09;ReadPosRankSum=1.691;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:301,153:0.34:454
chr3	32031622	rs13087612	T	C	5689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.944;QD=12.53;ReadPosRankSum=1.242;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:297,157:0.35:454
chr3	32031643	rs13065048	A	G	5689.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:277,162:0.37:439
chr3	32032397	rs4955216	G	T	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:199,81:0.29:280
chr3	32188006	rs9839702	G	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr3	32200233	rs2305362	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr3	32200322	rs2305361	T	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:131,58:0.31:189
chr3	32207606	rs6799559	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr3	32493682	rs342745	A	G	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:36,95:0.73:131
chr3	32510017	rs441171	G	A	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.789;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:178,75:0.30:253
chr3	32533246	rs35574803	T	C	2180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=0.623;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:34,103:0.75:137
chr3	32568145	rs3836420	C	CCA	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.367;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr3	32578505	rs2303857	T	C	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.003;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:45,76:0.63:121
chr3	32611599	rs73070861	C	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:31,66:0.68:97
chr3	32758761	rs201528016	TTG	T	389.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr3	32758763	rs11129531	G	A	736.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr3	32761749	rs60731094	CT	C	1524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.783;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:223,118:0.35:341
chr3	32776232	rs55889827	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr3	32805843	rs7430248	G	T	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=1.034;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr3	32815231	rs2396631	A	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	32915214	rs6799979	C	G	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr3	32927509	rs6774703	G	T	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr3	32933360	.	C	CTT	1209.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;MQRankSum=0.000;QD=34.55;ReadPosRankSum=1.811;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr3	32995928	rs2228428	C	T	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	33055721	rs4302331	A	G	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	33093190	rs12632196	T	C	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	33099880	rs7637435	T	C	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	33138544	rs7614776	A	G	35025.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,778:1.00:778
chr3	33138549	rs7637099	G	A	35049.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,786:1.00:786
chr3	33165303	rs4320036	C	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	33165436	rs6777433	T	A	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	33171659	rs4392367	A	G	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	33174156	rs1135127	T	G	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	33174168	rs1135128	G	A	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	33175793	rs4234239	C	A	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	33175854	rs58617854	A	G	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	33194757	rs191836311	T	C	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.389;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:135,50:0.27:185
chr3	33194990	rs6810039	C	A	5368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.717;ClippingRankSum=0.000;DB;DP=1043;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-1.508;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:708,331:0.32:1039
chr3	33216357	rs57072412	G	A	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:77,148:0.66:225
chr3	33255592	rs9637517	A	G	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	33260151	rs117206167	C	T	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.569;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr3	33434128	rs62252101	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,58:0.59:98
chr3	33434954	.	TA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.185;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr3	33444286	rs623244	T	G	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr3	33602585	rs151141295	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr3	33612364	.	TAA	T	58.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=-0.674;QD=7.36;ReadPosRankSum=-2.025;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:4,4:0.50:8
chr3	33618551	rs11391504	G	GA	513.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.55;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	33645514	.	G	A	59.81	.	AC=1;AF=0.500;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	33725814	rs111738010	GA	G	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=1.037;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr3	33879770	rs3203777	G	A	2787.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.51;MQRankSum=-0.438;QD=24.03;ReadPosRankSum=-0.686;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:2,114:0.98:116
chr3	35724256	rs1513475	T	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-1.252;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	35725250	rs969818	C	T	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:50,120:0.71:170
chr3	35731725	rs1513476	C	T	212.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-0.846;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr3	35756778	rs2305233	A	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr3	35756952	rs74492876	C	G	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.183;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:98,36:0.27:134
chr3	35778773	rs2278757	A	G	3091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.519;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=2.931;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:383,185:0.33:568
chr3	35778908	rs11927763	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=0.832;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr3	35779750	rs2012153	A	G	1530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=2.008;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:141,90:0.39:231
chr3	35780734	rs876159	G	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chr3	35785206	rs11712442	G	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	35785296	rs6550367	T	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,51:0.41:124
chr3	36422064	rs59881573	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr3	36422126	rs113135397	C	T	7777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.82;ReadPosRankSum=3.243;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:99,191:0.66:290
chr3	36422135	rs112766131	G	A	8126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.93;ReadPosRankSum=3.542;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:114,212:0.65:326
chr3	36422216	rs73052248	T	C	12146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=980;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-1.843;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:399,572:0.59:971
chr3	36422392	.	G	GGACCCGCCGAGACTTGAACGTCCGGTAA	2345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=2.570;QD=23.69;ReadPosRankSum=0.228;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:37,62:0.63:99
chr3	36422403	rs62245718	T	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr3	36484823	rs3749279	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr3	36534540	rs2290528	G	A	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:37,98:0.73:135
chr3	36570259	rs11305660	TA	T	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.094;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	36587541	rs9878872	C	G	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr3	36888575	rs12497299	C	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.864;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr3	36896653	rs9818599	G	C	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	36897812	rs11712950	T	C	1564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-1.267;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:176,89:0.34:265
chr3	36899593	rs7619089	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:79,27:0.25:106
chr3	36915524	rs4510338	T	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:77,41:0.35:118
chr3	36915814	rs4296548	T	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr3	36934343	rs5847939	CAT	C	858.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr3	36934534	rs9832646	G	C	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-2.114;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:55,33:0.38:88
chr3	36937106	rs11129741	G	A	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:182,104:0.36:286
chr3	37034946	rs1800734	G	A	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.912;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.118;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr3	37096024	rs749072	T	C	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:222,102:0.31:324
chr3	37100166	rs58404365	C	CA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=1.40;ReadPosRankSum=2.556;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr3	37163039	rs336595	G	A	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	37512646	rs11713408	TG	CC	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;JOINED;set=Intersection	GT:AD:AF:DP	0/1:206,108:0.34:314
chr3	37522792	rs17813754	T	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.08;ReadPosRankSum=0.825;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	37522828	rs197757	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.950;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr3	37522831	rs17036403	A	C	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.276;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr3	37522875	rs73055204	C	T	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.860;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:66,31:0.32:97
chr3	37523079	rs17227748	G	A	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:147,98:0.40:245
chr3	37535865	rs472893	TG	CA	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	37535984	rs2507940	C	G	7648.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	37536056	rs2507941	C	T	1273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-0.923;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:142,75:0.35:217
chr3	37536225	rs267523	C	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	37549983	rs17228684	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.704;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr3	37560577	.	CT	C	308.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=25.73;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	37560597	rs17815094	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=26.32;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	37560708	rs3733138	A	G	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=0.418;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:169,85:0.33:254
chr3	37574951	rs267561	G	A	10953.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr3	37575039	rs267560	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	37583851	rs2844349	A	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	37627112	rs1155741	T	C	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:117,54:0.32:171
chr3	37670876	rs2282485	G	C	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.610;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr3	37695192	rs3821909	G	A	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:111,59:0.35:170
chr3	37774363	rs115216783	T	C	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-0.326;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:165,85:0.34:250
chr3	38038982	rs6809649	T	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:133,71:0.35:204
chr3	38039187	rs6550514	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:148,61:0.29:209
chr3	38043904	rs9843296	T	C	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:228,119:0.34:347
chr3	38046023	rs9843506	A	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr3	38047607	rs9311176	A	C	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:112,62:0.36:174
chr3	38047954	rs9816693	G	C	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:206,75:0.27:281
chr3	38050159	rs113213588	G	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-0.167;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:55,42:0.43:97
chr3	38051941	rs9857730	T	C	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.850;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:143,67:0.32:210
chr3	38053206	rs9758003	T	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.644;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr3	38080952	rs7625806	T	G	2506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-0.558;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:331,158:0.32:489
chr3	38081031	rs7616776	A	T	2620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.613;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:457,177:0.28:634
chr3	38104353	rs3752614	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.44;ReadPosRankSum=1.536;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	38105498	rs71094947	C	CT	182.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.481;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr3	38125585	rs78482020	G	A	2713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.581;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:175,76:0.30:251
chr3	38125591	rs7632139	C	T	2742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-0.315;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:193,84:0.30:277
chr3	38125705	rs7652276	G	A	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:281,159:0.36:440
chr3	38134438	rs11129778	A	G	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	38151731	rs12630114	T	C	3712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=0.374;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:376,209:0.36:585
chr3	38156620	rs200515313	TG	T	1776.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=0.031;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:129,70:0.35:199
chr3	38170810	rs156265	C	G	5477.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:150,263:0.64:413
chr3	38348686	rs753330	T	G	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:98,60:0.38:158
chr3	38348949	rs818823	G	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr3	38350479	rs818819	T	C	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr3	38350519	rs818818	G	A	9102.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr3	38350543	rs818817	A	G	9287.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr3	38350630	rs704929	C	A	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	38354390	rs695939	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	38355176	rs11268633	T	TGTGTGTGTGTGTGCGCGCGC,TGTGTGTGTGTGTGTGCGCGCGC	1801.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.04;SOR=1.329;set=HC	GT:AD:AF:DP	1/2:0,30,15:0.67,0.33:45
chr3	38355509	rs696253	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	38390020	rs2615631	C	A	7703.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr3	38401677	rs818851	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	38401839	rs818850	T	C	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	38401918	rs818849	A	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	38402007	rs818848	T	A	80.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	38404472	rs17118	C	A	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	38406648	rs704942	T	C	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	38406773	rs704943	G	T	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	38406793	rs2234608	T	G	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	38408248	rs704946	G	A	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	38408361	rs843890	G	A	7473.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.065;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=3.207;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=0.829;SOR=0.378;set=HC	GT:AD:AF:DP	1/1:1,292:1.00:293
chr3	38408459	rs2234617	A	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	38409600	rs704947	T	G	5484.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	38411731	rs150130857	G	GCACACACACACA	440.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:1,12:0.92:13
chr3	38442490	rs2070488	G	A	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=2.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=1.034;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:159,51:0.24:210
chr3	38519424	rs2070489	A	G	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:234,106:0.31:340
chr3	38521156	rs13097628	T	C	1652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=1.242;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:188,98:0.34:286
chr3	38524742	rs1046048	C	T	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:349,152:0.30:501
chr3	38538466	rs1984312	G	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr3	38540541	rs2300668	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,32:0.86:37
chr3	38541318	rs2300669	C	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.297;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:41,29:0.41:70
chr3	38545349	rs6599206	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr3	38593128	.	TG	T	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.070;QD=2.08;ReadPosRankSum=-2.465;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:88,21:0.19:109
chr3	38622467	rs7430407	T	C	13098.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr3	38627164	.	G	GTGTGTGTGTGTGTGTGTGTGTGTGTGT	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.67;ReadPosRankSum=1.645;SOR=1.465;set=HC	GT:AD:AF:DP	0/1:9,1:0.10:10
chr3	38627629	rs7645173	A	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	38627658	rs112524625	T	TC,TCC	308.74	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/1:0.94:16
chr3	38645420	rs1805124	T	C	6669.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:186,316:0.63:502
chr3	38645506	rs45624133	A	G	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:352,164:0.32:516
chr3	38646423	rs7428779	C	T	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=0.917;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:35,55:0.61:90
chr3	38647642	rs41312433	G	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,43:0.46:93
chr3	38648062	rs6599222	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr3	38651442	rs41285129	G	A	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:129,100:0.44:229
chr3	38655643	.	C	T	21	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=24;MQ=60.0;NF=2;NR=2;PP=21;QD=13.9428031368;SC=TTGGCCCCCTCCCACGGGGGT;SbPval=0.64;Source=Platypus;TC=15;TCF=7;TCR=8;TR=4;WE=38655651;WS=38655633;set=Platypus	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	38674712	rs6599230	T	C	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	38739574	rs6599241	T	C	9216.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr3	38739845	rs6599242	A	G	8299.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr3	38749026	rs6599248	T	A	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	38812650	rs10212338	G	A	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr3	38812708	rs4420804	C	T	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:104,77:0.43:181
chr3	38938299	rs5848481	C	CT	197.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr3	38945560	rs4073113	A	G	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr3	38946872	rs4514993	A	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	38949363	rs6599267	A	C	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	38951753	rs7429404	T	C	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	38961537	rs6779297	T	C	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	38967103	rs4676474	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	39149092	rs6786764	A	G	12541.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,471:1.00:471
chr3	39166484	rs784508	C	T	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	39166509	rs784507	A	G	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr3	39166743	rs2669852	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	39167905	rs784506	G	A	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	39169693	rs1298712	A	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	39169712	rs1274969	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	39175576	rs784492	G	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	39178899	rs784495	C	T	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr3	39179909	rs784497	G	A	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	39180099	rs784498	T	C	10000.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr3	39180162	rs811969	A	C	13329.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,523:1.00:523
chr3	39180263	rs704959	G	A	6155.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	39184959	rs1274958	C	T	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr3	39185077	rs1274957	G	A	15365.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,598:1.00:598
chr3	39185248	rs784519	A	G	7661.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr3	39185968	rs810743	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	39186728	rs784517	C	T	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	39227642	.	T	A	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=2.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.223;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:227,70:0.24:297
chr3	39229900	rs6805248	T	C	10117.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr3	39307256	rs3732379	C	T	3354.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:116,156:0.57:272
chr3	39308293	rs4271863	A	T	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-1.774;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr3	39323163	rs11715522	A	C	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:84,160:0.66:244
chr3	39431081	rs2270770	G	A	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:95,152:0.62:247
chr3	39433147	rs1995236	G	A	9382.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr3	39437715	rs35086961	T	A	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.551;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr3	39437800	rs9877539	A	G	5991.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	39448204	rs3772146	C	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.059;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr3	39448424	rs3772144	T	C	2098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-0.431;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:226,127:0.36:353
chr3	39448581	rs3772143	T	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:119,42:0.26:161
chr3	39450065	rs3772138	C	T	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.226;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:220,85:0.28:305
chr3	39450276	rs34149164	C	CAT	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-1.931;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr3	39452106	rs2077798	A	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr3	39452123	rs2077797	G	A	2349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.73;ReadPosRankSum=0.070;SOR=1.205;set=HC	GT:AD:AF:DP	0/1:37,58:0.61:95
chr3	39452129	rs2077799	G	T	2523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.81;ReadPosRankSum=-1.389;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:37,69:0.65:106
chr3	39452772	rs1392192	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.529;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr3	39453160	rs2269350	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr3	39453610	rs2723	C	T	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:44,65:0.60:109
chr3	40204178	rs1714414	T	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	40231883	rs1317317	C	T	7600.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	40251282	rs2679798	G	A	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:55,96:0.64:151
chr3	40251392	rs1799418	T	C	3530.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:101,173:0.63:274
chr3	40251628	rs1799419	G	A	110.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	40286017	rs4618168	T	C	1579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.583;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:243,106:0.30:349
chr3	40351484	rs11709089	C	T	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:483,230:0.32:713
chr3	40352355	rs35523102	AT	A	602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=1.382;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:59,64:0.52:123
chr3	40352884	rs1454492	C	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr3	40353259	rs1470937	T	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	40353425	rs34544743	CAG	C	361.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	40435890	rs72861689	A	G	2105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-0.685;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:152,116:0.43:268
chr3	40442574	rs112091498	AGAGGTCC	A	589.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	40468896	rs1047855	C	T	2225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=2.473;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:312,138:0.31:450
chr3	40498720	rs17524303	TACGC	T	881.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.468;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:54,26:0.33:80
chr3	40498845	rs2276868	C	T	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:83,166:0.67:249
chr3	40498933	rs4973904	A	G	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	40503520	.	A	ACTGCTG,ACTGCTGCTGCTGCTG	6641.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.33;MQRankSum=-0.549;QD=27.45;ReadPosRankSum=1.690;SOR=0.306;set=HC	GT:AD:AF:DP	1/2:3,90,149:0.37,0.62:242
chr3	40503809	rs11539046	G	A	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr3	40503864	rs143811581	CTT	C	102.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.55;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr3	40505886	rs11129881	C	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	40519360	rs146475353	G	C	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	40519429	rs4553952	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	40519532	rs4128740	C	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr3	40528191	rs59042901	C	CA	98.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr3	40528547	rs61733800	G	A	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.423;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:208,105:0.34:313
chr3	40557271	rs149748710	TTGTG	T,TTG	2195.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.612;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.324;QD=26.14;ReadPosRankSum=-0.956;SOR=1.108;set=HC	GT:AD:AF:DP	1/2:6,28,50:0.33,0.60:84
chr3	41274764	rs2691680	C	A	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	41277040	rs11564465	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.89;ReadPosRankSum=0.246;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr3	41279440	rs4135385	A	G	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr3	41288561	rs141687204	C	T	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr3	41291081	rs2293304	G	A	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=0.674;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:155,82:0.35:237
chr3	41497165	rs9841301	G	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.710;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr3	41607701	rs1565957	C	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	41841716	rs4973986	A	C	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	41923513	rs59960840	GAGGCC	GGGCC,G	952.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	1/1:1.00:22
chr3	41923515	rs61575884	GGCCA	G	953.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	41923519	.	A	G	235	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=2;HapScore=2;MGOF=48;MMLQ=26;MQ=60.0;NF=12;NR=2;PP=235;QD=19.2693723248;SC=GAATGAGGCCATCACATCACC;SbPval=0.81;Source=Platypus;TC=19;TCF=15;TCR=4;TR=14;WE=41923527;WS=41923503;set=Platypus	GT:AD:AF:DP	1/1:5,14:0.74:19
chr3	41925260	rs113374533	CAGAGAAAAAACAAGTGA	C	717.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	41925301	rs1716685	T	C	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	41925398	rs1052501	C	T	7654.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr3	41925423	rs1716687	T	C	9126.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr3	41937000	rs1717003	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	41938500	rs1717005	G	C	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	41939993	rs1625226	T	A	2178.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.95;ReadPosRankSum=1.149;SOR=0.579;set=HC	GT:AD:AF:DP	1/1:7,97:0.93:104
chr3	41942199	rs1717007	T	C	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr3	41952781	rs1716991	C	T	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	41957466	rs1716698	T	G	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	41960006	rs1716975	T	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	41977214	rs3934103	C	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	41977488	rs58069203	CCT	C	13278.73	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	41996136	rs2272007	T	C	17034.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.696;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=1.327;SOR=0.287;set=HC	GT:AD:AF:DP	1/1:1,659:1.00:660
chr3	41996275	rs7651623	A	G	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	42202050	rs11370773	G	GT	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.577;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=61.17;MQRankSum=3.088;QD=8.26;ReadPosRankSum=1.552;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:20,26:0.57:46
chr3	42202055	rs9311304	G	GT,T	1332.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.26;MQRankSum=0.470;QD=30.99;ReadPosRankSum=1.612;SOR=0.569;set=HC	GT:AD:AF:DP	1/2:1,15,27:0.35,0.63:43
chr3	42202061	rs4974003	G	T	1472.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.40;MQRankSum=0.470;QD=34.25;ReadPosRankSum=1.613;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr3	42218095	rs1010987	G	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	42226151	rs4234445	T	C	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	42234758	rs3816397	C	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:125,66:0.35:191
chr3	42235280	rs146523477	TATCTTAGGAAGTG	T	889.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr3	42236415	rs9851455	A	G	8837.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-1.934;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:2,348:0.99:350
chr3	42240840	rs146700718	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr3	42244321	rs9311309	G	A	13304.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:1,520:1.00:521
chr3	42251263	rs2290134	C	T	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	42251329	rs2290133	C	T	2808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=1.029;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:285,161:0.36:446
chr3	42251577	.	CGGA	C,CGGAGGAGGA	8513.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=490;set=Intersection	GT:AF:DP	1/2:0.70,0.27:227
chr3	42251868	rs3836496	CT	C	701.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=0.772;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:50,28:0.36:78
chr3	42251895	rs143060806	TAA	T	277.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.52;ReadPosRankSum=-0.792;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr3	42304784	rs1868522	A	G	2410.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:266,142:0.35:408
chr3	42305131	rs754635	C	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	42438754	rs13054	T	C	1916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=-0.638;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:163,110:0.40:273
chr3	42448296	rs33518	T	C	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:302,187:0.38:489
chr3	42660489	rs10712209	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=1.992;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:59,26:0.31:85
chr3	42687278	rs73085333	C	T	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	42703150	.	A	G	1312.77	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:26,63:0.71:89
chr3	42728144	rs6805421	A	G	9582.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:1,373:1.00:374
chr3	42733468	rs123509	T	C	1503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-2.183;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:187,93:0.33:280
chr3	42735150	rs11079	T	C	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-0.828;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:231,136:0.37:367
chr3	42735274	rs339697	A	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr3	42738297	rs2290973	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:93,66:0.42:159
chr3	42799554	.	TAC	T	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-1.341;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr3	42799858	rs339678	T	A	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	42835889	rs6764909	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr3	42845806	.	C	A	4034.77	.	AC=1;AF=0.500;AN=2;DP=317;set=Intersection	GT:AD:AF:DP	0/1:127,178:0.58:305
chr3	42907112	rs2228468	A	C	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.252;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:92,53:0.37:145
chr3	42915878	rs735320	C	T	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:62,99:0.61:161
chr3	42917047	rs9865715	A	G	6945.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr3	42947776	rs6789928	T	C	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	42947793	rs9832875	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	42950181	rs7617715	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr3	42954912	rs11129987	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr3	42955839	.	AAAG	A	314.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr3	42956273	rs1427801	T	C	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	42956984	rs834579	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.538;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	43021007	rs6773223	C	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-2.200;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	43021088	rs6763762	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:9,39:0.81:48
chr3	43021383	rs6775999	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	43073761	rs658958	G	A	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:175,133:0.43:308
chr3	43074430	rs2948619	A	G	3212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=3.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.400;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:172,90:0.34:262
chr3	43074434	rs2936817	C	T	3207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=-0.452;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:176,92:0.34:268
chr3	43074871	rs588335	A	G	12819.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr3	43095101	rs536119	A	G	10670.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.11;ReadPosRankSum=-0.186;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:2,423:1.00:425
chr3	43096757	.	C	T	297.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr3	43096975	.	C	A	3724.77	.	AC=1;AF=0.500;AN=2;DP=272;set=Intersection	GT:AD:AF:DP	0/1:90,178:0.66:268
chr3	43097710	rs664628	A	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:293,121:0.29:414
chr3	43121559	rs604033	C	T	9263.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr3	43122966	rs2936818	G	A	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:137,64:0.32:201
chr3	43414318	rs6441771	A	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	43591142	rs12638282	G	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr3	43592906	rs9829081	T	C	3532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=-0.658;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:66,167:0.72:233
chr3	43602803	rs3772165	C	T	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:94,124:0.57:218
chr3	43607136	rs7616708	T	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=2.358;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr3	43607224	.	CA	C	234.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.318;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=2.560;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:4,17:0.81:21
chr3	43642126	rs6441785	C	A	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr3	43756577	rs10662733	C	CTG	888.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:93,54:0.37:147
chr3	44283525	rs9850927	A	G	49.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	44283672	rs9833423	T	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	44283808	rs7645375	C	A	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr3	44284584	rs9284879	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr3	44296403	rs4682960	T	C	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr3	44297948	rs7639827	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-0.735;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	44310592	rs5004668	T	C	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	44329394	rs11294162	TG	T	1089.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr3	44332176	rs1488637	T	C	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr3	44345646	rs1488639	A	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.264;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	44362408	rs9857957	G	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	44364825	rs75579151	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr3	44399668	rs4682970	T	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr3	44402846	.	T	G	843.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr3	44408864	.	G	GT	47	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=4;HapScore=2;MGOF=12;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=47;QD=36.9485868237;SC=GTAATAGAATGTTTAAAAGAT;SbPval=1.0;Source=Platypus;TC=6;TCF=5;TCR=1;TR=3;WE=44408872;WS=44408854;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	44434311	rs11716955	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.412;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr3	44437870	rs6441838	A	C	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	44489880	rs11710965	T	C	6389.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:138,294:0.68:432
chr3	44540791	rs36046723	TTC	T	11001.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr3	44607013	rs13081859	T	C	16553.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,634:1.00:634
chr3	44609626	rs6765468	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	44610008	rs114528092	A	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.395;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:47,23:0.33:70
chr3	44611896	rs9835485	A	G	9075.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr3	44612050	rs9873604	C	T	8081.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr3	44612895	rs2034476	C	G	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	44673430	rs28699350	G	C	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	44816952	.	C	CT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.454;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr3	44846477	.	G	GA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.757;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr3	44869026	rs4682999	A	T	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	44871505	rs11710339	A	T	9487.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr3	44916233	rs13076123	C	A	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=0.339;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr3	44938492	.	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=2.110;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	45046756	.	GA	G	3148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.145;QD=17.21;ReadPosRankSum=0.473;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:78,105:0.57:183
chr3	45127515	rs9874077	T	C	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	45132637	rs1879240	T	C	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-1.606;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:23,37:0.62:60
chr3	45134822	rs3749191	T	C	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:76,124:0.62:200
chr3	45137087	rs2037358	T	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr3	45187671	rs1863837	C	T	12183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=897;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=0.840;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:324,564:0.64:888
chr3	45267058	rs33750	G	A	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	45267310	rs41118	C	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.55;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	45267321	rs395917	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	45461102	rs11383389	G	GT	6121.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	45500174	rs745551	C	A	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.83;SOR=1.389;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	45515648	rs11919039	T	C	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	45517799	rs3733117	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	45527099	rs7640603	C	G	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	45527218	rs7610357	T	C	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	45530401	rs3733116	G	A	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	45533224	rs2128361	G	A	16465.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr3	45542083	rs2306522	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.07;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	45559519	rs2170549	T	C	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr3	45561633	.	T	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=0.108;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr3	45565554	rs267220	A	G	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	45636335	rs267238	A	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr3	45637253	rs267237	C	T	9910.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr3	45637439	rs267236	T	C	10343.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr3	45677635	rs11379880	C	CT	15052.73	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	45677637	.	GCA	TGC	2937	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=1;MGOF=7;MMLQ=19;MQ=59.9;NF=87;NR=60;PP=2937;QD=20;SC=CTCTTGTCCTGCAAGGAGCCT;SbPval=0.47;Source=Platypus;TC=155;TCF=93;TCR=62;TR=147;WE=45677647;WS=45677627;set=Platypus	GT:AD:AF:DP	1/1:8,147:0.95:155
chr3	45677638	rs5848762	CA	C	15341.73	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr3	45715159	rs35737275	CT	C	1310.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	45715688	rs2578679	G	A	6817.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	45718327	rs7640969	T	G	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	45755732	.	TG	T	40	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=2;HapScore=2;MGOF=100;MMLQ=19;MQ=65.19;NF=0;NR=2;PP=40;QD=31.5;SC=CTATTTTGTTTGTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=45755740;WS=45755722;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	45776875	rs111484566	CT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.864;QD=0.50;ReadPosRankSum=0.546;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:128,35:0.21:163
chr3	45780906	rs3733107	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	45799871	rs2251347	C	T	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	45817418	rs758386	A	G	14608.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:1,569:1.00:570
chr3	45939016	rs17764980	G	A	3797.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:85,163:0.66:248
chr3	45977866	rs4535265	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr3	45977899	rs1873002	T	C	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	45979877	rs9875616	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	45989044	rs2234358	T	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	45996761	rs1463680	G	A	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	46000870	rs13069079	G	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:37,68:0.65:105
chr3	46001063	rs1532071	G	A	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	46007702	rs1994490	T	C	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	46007823	rs13079478	G	T	6138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.07;ReadPosRankSum=0.911;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:101,154:0.60:255
chr3	46007823	.	GTT	TTC	2030	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=3;HapScore=1;MGOF=11;MMLQ=18;MQ=59.81;NF=36;NR=31;PP=2030;QD=31.0965354457;SC=ACTTGAGGGTGTTGAGCTCCT;SbPval=0.49;Source=Platypus;TC=112;TCF=62;TCR=50;TR=67;WE=46007833;WS=46007813;set=Platypus	GT:AD:AF:DP	0/1:45,67:0.60:112
chr3	46007825	rs13059238	T	C	6138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.98;ReadPosRankSum=0.676;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:102,154:0.60:256
chr3	46008087	rs13079869	G	A	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:185,260:0.58:445
chr3	46008790	rs3796375	G	A	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-1.188;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:216,110:0.34:326
chr3	46009487	rs33910087	G	A	8436.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:222,387:0.64:609
chr3	46009864	rs3733100	C	G	6768.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr3	46010007	rs13071283	T	C	8868.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:271,422:0.61:693
chr3	46010077	rs4683158	C	T	19336.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	1/1:0,725:1.00:725
chr3	46014545	rs41289622	T	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr3	46016599	rs3821884	T	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	46016851	rs751552	A	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:112,55:0.33:167
chr3	46016944	rs751553	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	46021218	rs4682801	G	T	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	46026209	rs11338292	CA	C	563.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr3	46026259	rs3733097	G	A	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.756;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:111,62:0.36:173
chr3	46063329	rs2230322	T	C	5478.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:124,252:0.67:376
chr3	46306700	rs4987053	T	C	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:65,78:0.55:143
chr3	46399798	rs1799865	T	C	12751.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr3	46449391	rs11574442	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	46449581	rs11574443	A	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr3	46450297	rs3204850	A	G	9637.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr3	46480801	rs9110	A	G	12721.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr3	46482980	rs17285324	A	T	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.526;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=5.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-1.948;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:151,66:0.30:217
chr3	46484898	rs7615975	T	G	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	46484964	rs1042073	G	A	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	46487003	rs2269435	A	G	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	46487750	rs6776504	A	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	46488854	rs2239692	T	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	46489015	rs743659	A	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	46490250	rs1475967	A	G	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	46490366	rs2230895	G	A	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:324,164:0.34:488
chr3	46490474	rs2230894	G	A	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr3	46491948	rs6774882	T	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	46495716	rs17135	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:153,65:0.30:218
chr3	46497723	rs4683227	C	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr3	46501100	rs17078878	C	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-3.558;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:81,26:0.24:107
chr3	46501213	rs1126478	T	C	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=25.12;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	46501268	rs1126477	C	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.64;MQRankSum=-0.252;QD=6.68;ReadPosRankSum=1.634;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:61,38:0.38:99
chr3	46501284	rs10662431	C	CCTT	2793.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=42.98;SOR=1.539;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	46501842	rs4234463	G	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	46501931	rs4683235	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:72,34:0.32:106
chr3	46509712	rs72900270	A	G	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.544;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:98,39:0.28:137
chr3	46539480	rs4683241	A	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr3	46539864	rs11130092	C	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	46574256	rs9849400	C	T	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-2.033;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:11,36:0.77:47
chr3	46574418	rs1402152	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr3	46580591	rs17078944	G	T	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:67,109:0.62:176
chr3	46580668	rs375029602	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.434;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=177.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=1.849;SOR=7.378;set=HC	GT:AD:AF:DP	0/1:78,39:0.33:117
chr3	46580830	rs35082490	A	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	46586622	rs17286758	T	C	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:49,118:0.71:167
chr3	46592895	rs28617572	G	A	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,74:0.65:113
chr3	46592987	rs28687398	A	G	4344.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:118,214:0.64:332
chr3	46593147	rs1879325	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr3	46620614	rs11130097	T	C	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-0.171;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:36,75:0.68:111
chr3	46654132	rs2139637	G	A	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	46658737	rs9832679	A	G	9396.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr3	46658872	rs9870935	G	T	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	46713102	rs6776565	C	T	4237.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:169,212:0.56:381
chr3	46714797	rs11130103	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr3	46714821	rs11130104	C	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr3	46717065	rs7635360	C	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:30,93:0.76:123
chr3	46717931	rs6808525	T	C	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:62,126:0.67:188
chr3	46717957	rs9876451	A	G	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:35,91:0.72:126
chr3	46718298	rs6806400	A	G	10704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=846;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=-0.364;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:308,528:0.63:836
chr3	46722692	rs13080080	G	T	7780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=2.221;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:206,366:0.64:572
chr3	46723551	rs4683310	G	A	10199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=792;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-1.536;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:296,489:0.62:785
chr3	46723663	rs4683311	C	T	7248.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:190,349:0.65:539
chr3	46724569	rs9847407	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	46747457	rs76829263	C	T	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-2.128;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:260,102:0.28:362
chr3	46750553	rs11130106	G	A	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr3	46750798	rs372263291	C	T	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:64,103:0.62:167
chr3	46751073	rs10578999	TAAG	T	7476.73	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:113,190:0.63:303
chr3	46753976	rs9815362	T	C	7467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-1.520;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:178,363:0.67:541
chr3	46933960	rs1001284	C	G	7692.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:185,363:0.66:548
chr3	46943028	rs1531137	T	C	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chr3	46944274	rs1138518	T	C	6155.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:190,301:0.61:491
chr3	46963502	rs4587	T	C	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	46965197	rs2290546	C	G	3719.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	46967040	rs2290545	G	A	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	46982365	rs6804732	T	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	47018214	rs936181	T	C	23062.77	.	AC=2;AF=1.00;AN=2;DB;DP=901;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,894:1.00:894
chr3	47018447	rs34971711	CA	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=9.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-1.606;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr3	47021509	rs113932344	CGCGCGCGCGG	C	258.76	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=36.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	47029426	rs1108301	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr3	47029661	rs12152493	G	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.877;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:118,49:0.29:167
chr3	47033937	rs13066214	C	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:146,68:0.32:214
chr3	47035625	rs936185	G	A	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	47035900	rs749512	C	T	5616.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:107,258:0.71:365
chr3	47036756	rs11720139	C	G	5564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.257;QD=12.68;ReadPosRankSum=0.059;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:171,268:0.61:439
chr3	47038135	rs11396344	C	CA	7466.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	47043386	rs73075647	C	T	7090.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:131,333:0.72:464
chr3	47043538	rs2305634	C	T	2030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-1.839;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:179,115:0.39:294
chr3	47043622	rs2305635	G	A	2713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=1.683;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:101,133:0.57:234
chr3	47044122	rs11928558	A	T	13370.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr3	47045739	rs1079276	C	G	5726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.696;QD=5.35;ReadPosRankSum=0.375;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:722,348:0.33:1070
chr3	47046842	rs2305638	G	C	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:108,55:0.34:163
chr3	47047176	rs5848810	A	AG	1777.73	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:151,79:0.34:230
chr3	47047358	rs13081418	A	C	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:227,117:0.34:344
chr3	47050908	rs3214838	AG	A	478.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:81,26:0.24:107
chr3	47079112	rs6768722	G	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:65,41:0.39:106
chr3	47087837	rs13063578	T	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=0.754;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr3	47103861	rs10589946	GTT	G	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=6.550;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.483;QD=3.81;ReadPosRankSum=-1.307;SOR=1.477;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr3	47125385	rs4082155	G	A	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:258,112:0.30:370
chr3	47142907	rs60548476	TCC	T	1676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=0.797;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:128,55:0.30:183
chr3	47143087	.	A	AGT	1135.73	.	AC=1;AF=0.500;AN=2;DP=170;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr3	47147393	rs55987628	CAA	C	781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.893;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.025;QD=7.59;ReadPosRankSum=-0.604;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:56,47:0.46:103
chr3	47161214	rs11923706	T	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:76,25:0.25:101
chr3	47162661	rs6767907	A	G	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:178,122:0.41:300
chr3	47168219	rs11717033	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.82;ReadPosRankSum=1.465;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	47187075	rs6442059	C	G	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:139,89:0.39:228
chr3	47205502	.	CGCGGCGGCG	C,CGCG	1967.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=94;set=Intersection	GT:AF:DP	1/2:0.35,0.61:54
chr3	47276968	rs2276854	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:81,48:0.37:129
chr3	47277458	rs1874264	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	47277885	rs13094438	G	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	47282303	rs2276853	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr3	47286227	rs6772449	G	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	47287603	rs35871850	A	AT	2165.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	47305928	rs140345125	TTTTTA	T	1897.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,49:0.60:82
chr3	47316725	rs903538	G	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	47318747	rs924009	T	G	8826.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr3	47322496	rs807936	C	T	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:225,142:0.39:367
chr3	47361082	rs2302278	G	T	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.070;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr3	47363971	rs17410853	G	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	47376095	rs295450	A	G	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	47385389	rs148682976	G	A	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:195,102:0.34:297
chr3	47449058	rs900688	T	C	15346.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,578:1.00:578
chr3	47451411	rs3736177	C	T	2240.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:53,100:0.65:153
chr3	47452087	rs900689	G	A	33521.77	.	AC=2;AF=1.00;AN=2;DB;DP=1285;set=Intersection	GT:AD:AF:DP	1/1:0,1274:1.00:1274
chr3	47452118	rs6780013	G	A	17993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=1351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=1.719;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:471,859:0.65:1330
chr3	47452786	rs1531875	G	A	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:183,112:0.38:295
chr3	47453216	rs11707038	G	A	4828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.33;ReadPosRankSum=-0.388;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:115,222:0.66:337
chr3	47454399	rs6789730	G	A	15150.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.44;ReadPosRankSum=-0.047;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:10,610:0.98:620
chr3	47456225	rs6442066	T	C	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	47459379	.	ACG	AGGGGGGTGAGAGGGGGCG,A	274.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=23;set=Intersection	GT:AF:DP	1/1:1.00:11
chr3	47459380	.	C	G	479	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=0.5000;HP=5;HapScore=3;MGOF=151;MMLQ=15;MQ=57.95;NF=3;NR=8;PP=479;QD=46.7064738679;SC=GGGCGGGGGACGGGGGTGAGA;SbPval=0.38;Source=Platypus;TC=15;TCF=3;TCR=12;TR=11;WE=47459388;WS=47459362;set=Platypus	GT:AD:AF:DP	1/1:4,11:0.73:15
chr3	47459564	rs148152356	CG	C	494.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr3	47462200	rs900690	T	C	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	47462587	rs900691	A	G	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr3	47464122	rs1038394	A	G	1646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=1.225;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:174,91:0.34:265
chr3	47539751	rs2170814	T	C	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	47539969	rs13059519	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:87,31:0.26:118
chr3	47543389	rs3816779	G	A	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:157,83:0.35:240
chr3	47544794	rs11717374	T	A	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.612;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:48,71:0.60:119
chr3	47555142	rs2291298	C	A	3222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-0.483;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:424,200:0.32:624
chr3	47604299	rs4858839	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	47614413	rs2280567	G	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	47618825	rs61732079	A	C	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:404,170:0.30:574
chr3	47618953	rs3732530	C	A	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:337,157:0.32:494
chr3	47645933	rs62262079	A	T	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:121,69:0.36:190
chr3	47680066	rs12633923	C	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	47680119	rs12636863	T	C	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:103,46:0.31:149
chr3	47722034	.	C	CT	34.15	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.79;ReadPosRankSum=-1.016;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	47734700	rs12635438	A	G	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:74,115:0.61:189
chr3	47762030	rs12495204	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr3	47770380	rs6442081	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr3	47807225	.	A	AT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.485;QD=1.78;ReadPosRankSum=-0.154;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr3	47814192	.	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.07;ReadPosRankSum=-0.700;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	47891744	rs10537180	CAA	C	1414.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=42.87;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	47894883	.	A	G	478.77	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr3	47953405	rs4858871	A	C	4582.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:84,207:0.71:291
chr3	47953733	rs34025851	C	A	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:93,144:0.61:237
chr3	47956424	rs1137524	C	T	5581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-0.914;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:159,266:0.63:425
chr3	47956506	rs11707679	T	C	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:92,162:0.64:254
chr3	47957996	rs2230169	C	G	3835.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:112,183:0.62:295
chr3	47958037	rs1060407	G	T	4464.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:131,216:0.62:347
chr3	48019232	rs6770467	A	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr3	48019258	rs6770477	A	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr3	48040283	rs11711953	C	T	6532.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:160,314:0.66:474
chr3	48206102	rs3731555	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	48209486	rs3731539	C	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	48219320	rs3731514	AAC	A	20219.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.440;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.007;QD=31.84;ReadPosRankSum=-0.419;SOR=0.396;set=HC	GT:AD:AF:DP	1/1:8,627:0.99:635
chr3	48219537	rs3731513	A	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	48228059	.	C	CA	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=1.348;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:47,24:0.34:71
chr3	48282494	rs9830016	T	C	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	48282651	rs35806621	TGCGC	T	18296.73	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr3	48282695	rs9847953	A	G	6767.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=26.23;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	48299439	rs6787500	T	C	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	48309828	rs11718329	C	G	6773.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr3	48327729	rs9853804	T	C	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	48327751	rs9834095	G	A	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.59;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	48338173	rs4479622	C	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	48340045	rs13085251	C	T	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	48342669	rs34523942	C	T	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	48342882	rs35297395	C	T	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	48348564	rs79089926	A	C	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	48351560	rs6793150	G	A	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	48360992	rs11718350	T	G	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	48362369	rs7645425	A	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	48414197	rs9852211	A	T	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	48414215	rs9815103	G	A	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	48419723	rs7630741	G	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	48422235	rs6784322	T	A	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	48422512	.	GTT	G,GT	471.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.77;MQRankSum=0.069;QD=13.10;ReadPosRankSum=0.974;SOR=0.512;set=HC	GT:AD:AF:DP	1/2:4,20,12:0.56,0.33:36
chr3	48450706	rs3217706	TC	T	1194.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	48451300	rs3214871	AG	A	9219.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	48454468	rs3214041	C	T	8339.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr3	48455626	rs6794875	A	G	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	48459828	rs11712752	C	T	6330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=0.176;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:193,294:0.60:487
chr3	48461313	rs2362450	C	G	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	48462461	rs11130171	A	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	48463618	rs9883759	T	A	9258.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr3	48463711	rs9883927	T	C	7172.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr3	48474249	rs2279077	A	G	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr3	48476431	rs13062723	C	G	10975.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr3	48481647	rs3774808	G	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	48491995	rs11289308	AT	A	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.557;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.162;QD=2.49;ReadPosRankSum=0.664;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:42,31:0.42:73
chr3	48505302	rs6442124	A	G	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	48505964	rs2242150	C	A	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	48508585	rs11797	C	T	24386.77	.	AC=2;AF=1.00;AN=2;DB;DP=954;set=Intersection	GT:AD:AF:DP	1/1:0,936:1.00:936
chr3	48515079	rs4858795	C	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=0.120;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	48518513	.	G	GA	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.702;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:130,38:0.23:168
chr3	48576483	rs7615170	C	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	48602523	rs138595277	G	GGGC	13380.73	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	48623124	rs35761247	G	A	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=2.524;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:281,131:0.32:412
chr3	48624611	rs2255532	C	T	5335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=1.910;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:402,294:0.42:696
chr3	48625266	rs1264194	T	C	14741.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,577:1.00:577
chr3	48628318	.	T	C	1435.77	.	AC=1;AF=0.500;AN=2;DP=188;set=Intersection	GT:AD:AF:DP	0/1:103,77:0.43:180
chr3	48659009	rs9834639	G	T	2480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.691;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:252,143:0.36:395
chr3	48681765	rs147930066	CAG	C	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.305;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:80,19:0.19:99
chr3	48719638	rs7633840	T	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	48723302	rs6792510	G	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	48727112	rs4858798	G	A	5252.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.530;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.292;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=-0.644;SOR=0.444;set=HC	GT:AD:AF:DP	1/1:1,206:1.00:207
chr3	48731487	rs3172494	G	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	48845251	rs9311430	C	T	5876.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	48897078	rs6414612	A	G	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	48982732	rs9864243	G	A	96.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	48986399	rs13315711	A	T	11694.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr3	48986546	rs371516194	CATTTATTT	C	3033.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	49004723	rs6446196	A	G	5030.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	49044767	rs6781790	C	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	49053219	rs7100	A	G	12131.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr3	49054692	rs3087866	T	C	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	49056150	rs78807522	C	A	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	49064576	rs72624911	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.444;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr3	49070499	rs4974081	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	49114544	rs7626445	C	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	49133310	rs9840050	A	G	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	49135961	rs13064784	C	G	19003.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,735:1.00:735
chr3	49137904	rs4521268	G	T	12920.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr3	49139966	rs4513485	G	A	5963.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr3	49145741	rs3212	T	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	49148890	rs4292260	T	C	41798.77	.	AC=2;AF=1.00;AN=2;DB;DP=1651;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,1636:1.00:1636
chr3	49161660	rs34290943	T	C	11407.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr3	49162284	rs34759087	C	T	13582.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr3	49166069	rs9865051	C	T	9067.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr3	49168724	rs138285969	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr3	49200627	rs4955418	A	G	27499.77	.	AC=2;AF=1.00;AN=2;DB;DP=1063;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,1051:1.00:1051
chr3	49200692	rs4955419	T	A	33312.77	.	AC=2;AF=1.00;AN=2;DB;DP=1284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,1268:1.00:1268
chr3	49201000	.	T	C	4968.77	.	AC=1;AF=0.500;AN=2;DP=336;set=Intersection	GT:AD:AF:DP	0/1:103,226:0.69:329
chr3	49210615	.	T	A	441.77	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,28:0.30:92
chr3	49210732	rs7617480	A	C	110.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	49211989	rs10865954	T	C	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	49249381	rs9867285	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	49269758	rs2099526	G	T	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	49273996	rs12631989	C	T	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	49292991	rs11344456	CT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-0.534;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	49298139	rs7626076	G	A	5757.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	49298205	rs4955417	T	C	10312.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr3	49314110	rs61749309	T	C	4321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=0.634;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:88,198:0.69:286
chr3	49354975	rs71077785	GT	G	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.056;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	49365269	rs6795772	C	T	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	49394834	rs1050450	G	A	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	49395673	rs139760138	GGCC	G	2302.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.05;QD=43.45;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	49395757	rs1800668	G	A	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.44;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	49450449	rs6779524	C	T	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	49455330	rs11715915	C	T	10920.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr3	49463926	rs6762593	A	G	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	49463962	rs113679342	C	CT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=2.84;ReadPosRankSum=1.695;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr3	49548008	rs2131107	C	G	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	49548294	rs2329024	T	C	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=1.322;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	49568095	rs2311801	G	A	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	49570200	rs1801143	C	T	9045.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr3	49689210	rs34762726	G	A	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	49690199	rs4855885	G	A	8810.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr3	49690496	rs11709525	C	T	16758.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:1,637:1.00:638
chr3	49701983	rs9858542	G	A	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	49713753	rs6778597	T	C	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	49714225	rs1131095	T	C	12648.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr3	49719729	rs9822268	G	A	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	49721532	rs3197999	G	A	8539.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr3	49721798	rs13085791	C	A	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr3	49722356	rs9837520	G	A	4177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=10.118;QD=19.16;ReadPosRankSum=0.429;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:32,186:0.85:218
chr3	49723321	.	AGCGCTG	A	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.762;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-6.903;QD=1.27;ReadPosRankSum=-0.375;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:144,16:0.10:160
chr3	49723735	rs184629099	C	G	2119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.53;MQRankSum=-1.813;QD=15.94;ReadPosRankSum=6.107;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:30,103:0.77:133
chr3	49723823	rs7431215	A	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=54.09;MQRankSum=-10.239;QD=5.12;ReadPosRankSum=-4.941;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:174,86:0.33:260
chr3	49724014	rs62262684	G	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr3	49724048	rs10711993	TC	T	161.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr3	49724808	rs3020779	T	C	8705.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr3	49725948	rs141881740	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-3.160;QD=9.60;ReadPosRankSum=-0.716;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr3	49726028	rs62262685	T	C	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-6.557;QD=7.01;ReadPosRankSum=5.332;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:92,61:0.40:153
chr3	49726070	rs62262686	G	A	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-5.032;QD=5.81;ReadPosRankSum=-1.409;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:97,51:0.34:148
chr3	49726178	rs147997200	G	A	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.15;QD=26.74;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	49736565	rs6785549	G	A	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	49739086	rs1491986	C	T	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	49739507	rs1491985	G	C	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr3	49744392	rs3749241	A	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	49750188	rs3749240	T	A	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr3	49753003	rs34614773	T	G	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	49753788	rs11720705	A	G	12268.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr3	49760039	rs1466685	T	C	14679.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:1,563:1.00:564
chr3	49785133	rs7374183	G	A	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	49832788	rs73079003	G	A	6090.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,237:0.99:239
chr3	49843776	rs374929956	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-1.485;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	49880182	rs148349093	C	A	157.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.49;ReadPosRankSum=1.221;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr3	49928614	rs4395393	T	A	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.119;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:177,71:0.29:248
chr3	49928691	rs7433231	T	C	9648.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=3.057;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=-1.080;SOR=0.266;set=HC	GT:AD:AF:DP	1/1:1,373:1.00:374
chr3	49949537	rs146998023	C	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=0.416;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr3	50098311	.	G	A	495.78	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr3	50112589	.	C	CA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.184;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr3	50114515	rs7061	C	T	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	50129374	rs5848907	T	TA	671.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	50129399	rs2013208	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	50130161	rs115261880	A	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chr3	50144951	rs1061474	T	C	7732.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr3	50148305	rs2301166	C	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	50153356	rs1138536	T	C	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	50155887	rs112672304	TGA	T	673.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.917;QD=4.08;ReadPosRankSum=1.074;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:131,34:0.21:165
chr3	50192760	rs2526390	C	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-0.792;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr3	50197097	rs1046953	C	T	3223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=2.938;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:434,205:0.32:639
chr3	50212381	rs34118560	A	AT	1284.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:80,43:0.35:123
chr3	50212512	rs2624833	G	T	16811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;ClippingRankSum=0.000;DB;DP=1321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-2.541;QD=12.82;ReadPosRankSum=2.204;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:502,809:0.62:1311
chr3	50221027	rs111744323	C	T	3917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=1.591;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:146,189:0.56:335
chr3	50222926	rs1046956	T	A	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:148,87:0.37:235
chr3	50223593	rs2073726	T	A	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:101,82:0.45:183
chr3	50223977	rs11717349	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr3	50224225	rs12632110	A	G	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:198,76:0.28:274
chr3	50225029	rs11711407	A	G	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.442;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:175,72:0.29:247
chr3	50251833	rs5848902	A	AG	8554.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	50253143	rs201130965	C	T	6491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=-0.589;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:147,301:0.67:448
chr3	50255305	rs739431	A	G	13868.77	.	AC=1;AF=0.500;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	0/1:306,631:0.67:937
chr3	50257389	rs35742391	G	A	6322.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:197,305:0.61:502
chr3	50290016	rs28763896	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr3	50294551	rs9830408	A	G	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:45,99:0.69:144
chr3	50306632	rs9875873	C	T	4020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.585;QD=12.30;ReadPosRankSum=1.300;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:128,199:0.61:327
chr3	50306752	rs67324803	G	GC	1339.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	50308718	rs4688739	A	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.476;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	50310922	rs41291728	G	A	5418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=939;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.163;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:602,322:0.35:924
chr3	50329826	rs1076872	A	G	14516.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,568:1.00:568
chr3	50339622	rs116482870	C	T	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:217,128:0.37:345
chr3	50357869	rs709210	A	C	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:60,109:0.64:169
chr3	50418547	rs56287038	G	T	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:85,122:0.59:207
chr3	50596168	.	G	A	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=0.155;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:123,65:0.35:188
chr3	50597092	rs1034405	G	A	11728.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr3	50598396	rs41291736	G	A	2873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=-0.763;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:66,135:0.67:201
chr3	50609123	rs636168	T	C	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr3	50609624	rs2232248	T	G	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr3	50645635	rs621975	T	G	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	50645793	rs622502	C	G	12347.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr3	50678001	rs608961	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	50683809	rs876105	T	C	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	50684489	rs4468971	A	G	5128.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	51246360	rs4301044	A	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	51273711	rs1480362	A	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	51273773	rs1480361	T	C	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	51274902	rs11386090	T	TA	2559.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:146,90:0.38:236
chr3	51393706	rs35251332	C	CAG	2823.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	51395571	rs1542574	C	T	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	51418348	rs2241784	G	A	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	51422741	rs376055905	CGGA	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.863;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr3	51422766	rs13091931	G	T	1855.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	51468970	rs5848921	C	CA	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=2.740;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr3	51469107	rs4611808	C	T	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	51471278	rs71633071	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.05;ReadPosRankSum=1.816;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr3	51517625	rs72112939	TTG	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.491;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr3	51697493	rs904145	A	G	6753.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,256:0.99:258
chr3	51863322	rs75800791	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,40:0.42:96
chr3	51863712	rs201305590	G	T	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:85,104:0.55:189
chr3	51895850	rs986539	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	51897361	rs143988582	T	C	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:40,91:0.69:131
chr3	51907736	rs7635409	A	G	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:57,103:0.64:160
chr3	51908226	rs1505403	T	C	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	51908430	rs6794320	T	C	12738.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,499:1.00:499
chr3	51911116	rs199649050	TTC	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=-0.000;DB;DP=50;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=62.55;MQRankSum=-0.000;QD=3.05;ReadPosRankSum=0.204;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	51929183	rs11927897	C	T	10897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=2.757;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:281,504:0.64:785
chr3	51929360	rs34574240	GA	G	2311.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	51930729	rs149100108	G	GCACA	565.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=2.261;SOR=1.381;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr3	51930850	rs57859638	T	C	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.658;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.359;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:196,85:0.30:281
chr3	51975577	rs929533	C	T	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	51978220	rs28547534	A	G	15682.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:1,605:1.00:606
chr3	51978640	rs4687792	G	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr3	51981758	.	A	G	3855.77	.	AC=1;AF=0.500;AN=2;DP=304;set=Intersection	GT:AD:AF:DP	0/1:116,184:0.61:300
chr3	51990119	rs28587738	A	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	51990315	rs28651222	A	G	8845.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr3	52014218	.	G	A	744.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr3	52022742	rs41292352	G	A	5343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=-1.058;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:150,258:0.63:408
chr3	52023042	rs121912701	G	A	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-1.241;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:216,79:0.27:295
chr3	52110089	rs41292354	C	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	52180877	rs150342460	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr3	52232979	rs3216487	A	ATTTAC	11694.73	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=44.30;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	52236762	rs352169	G	A	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	52237970	rs352168	C	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr3	52238656	rs352167	T	C	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	52238677	rs352166	C	T	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	52256697	rs352140	C	T	6307.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	52258372	rs352139	T	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	52259494	rs199862165	C	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-1.333;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:74,29:0.28:103
chr3	52272945	rs11441245	C	CG	1699	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:8,73:0.90:81
chr3	52325759	rs2276834	A	G	11283.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr3	52365131	.	G	C	1203.77	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:34,57:0.63:91
chr3	52395629	rs146747806	T	C	2192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.132;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:251,126:0.33:377
chr3	52396505	.	T	C	5558.77	.	AC=1;AF=0.500;AN=2;DP=460;set=Intersection	GT:AD:AF:DP	0/1:175,276:0.61:451
chr3	52407041	rs1546737	C	T	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.242;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	52415865	rs770284	A	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	52430698	rs365048	A	G	13758.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr3	52441019	.	G	A	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=0.284;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:57,47:0.45:104
chr3	52453893	rs498778	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	52456973	rs2272088	A	G	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	52471942	rs82825	G	A	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	52477080	rs2016575	T	C	8031.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:2,322:0.99:324
chr3	52478750	.	G	GCACC	827	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=78;MMLQ=23;MQ=59.9;NF=24;NR=24;PP=827;QD=17.7916666667;SC=CACGGCACACGCAAACTCGGC;SbPval=0.45;Source=Platypus;TC=58;TCF=27;TCR=31;TR=48;WE=52478758;WS=52478737;set=Platypus	GT:AD:AF:DP	0/1:10,48:0.83:58
chr3	52478783	.	CGCACACAAACACTGCACAT	C	2972	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=1;HapScore=1;MGOF=31;MMLQ=20;MQ=63.09;NF=16;NR=48;PP=2972;QD=20;SC=ACTCGGCACACGCACACAAAC;SbPval=0.56;Source=Platypus;TC=67;TCF=17;TCR=50;TR=64;WE=52478809;WS=52478773;set=Platypus	GT:AD:AF:DP	1/1:3,64:0.96:67
chr3	52488202	rs1035002	C	T	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	52489564	rs968588	A	T	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.341;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	52492085	rs4687614	G	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	52492707	rs1541495	T	C	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	52505758	rs3065763	G	GAT	3067.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	52506282	rs4312651	A	G	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	52506426	rs6784615	C	T	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.52;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	52506491	rs6445486	A	G	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	52506546	.	G	A	195.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr3	52507719	rs13094915	G	C	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	52510592	rs9856575	G	A	10286.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr3	52512318	rs2109559	A	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	52513940	rs4687618	T	C	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	52518786	rs4687619	T	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	52523405	rs887515	C	T	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	52524974	rs4687621	A	C	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	52536308	rs758801	A	C	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	52536514	rs731831	G	A	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	52537969	rs4687545	T	C	9156.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr3	52544470	rs9835659	A	G	9128.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr3	52546487	rs7644763	C	T	8451.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr3	52546820	rs2015971	C	T	8570.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr3	52551265	rs66824127	T	C	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	52551284	rs67409736	G	T	6199.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.69;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	52552922	.	C	CCCCGCCCCGCCCCGCCCCGCCCCGT	1481.06	.	AC=2;AF=1.00;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr3	52553625	rs112646045	TGTAA	T	8888.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	52554304	rs7630214	G	C	22706.77	.	AC=2;AF=1.00;AN=2;DB;DP=877;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,863:1.00:863
chr3	52555316	rs13081028	G	A	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	52555957	rs9853056	T	C	11171.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:1,432:1.00:433
chr3	52556890	rs4434138	A	G	9461.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr3	52557038	rs4234633	C	T	10525.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr3	52557445	rs116423614	G	A	5946.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:141,278:0.66:419
chr3	52558008	rs13303	T	C	7651.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr3	52558133	rs13621	T	C	31339.77	.	AC=2;AF=1.00;AN=2;DB;DP=1238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,1227:1.00:1227
chr3	52558904	rs34005367	A	T	14016.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr3	52559167	rs72449664	CGGGG	C	10817.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;MQRankSum=0.308;QD=41.93;ReadPosRankSum=1.719;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:4,254:0.98:258
chr3	52561779	rs11711421	C	T	11679.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr3	52562716	rs146460877	C	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:59,26:0.31:85
chr3	52567617	rs66782572	A	G	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	52584431	rs34372721	T	TCTC	3786.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	52584715	rs2878628	A	G	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	52584787	rs2251219	T	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	52610651	rs17264436	T	A	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	52621627	rs3733046	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	52637486	rs2276824	C	G	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	52643307	rs3733045	A	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	52643685	rs3755806	T	C	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	52659124	rs34215106	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	52661351	rs147488144	G	A	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:165,70:0.30:235
chr3	52676065	rs11719685	C	T	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-2.032;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:32,107:0.77:139
chr3	52692124	rs2336149	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	52692359	rs2590846	C	G	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	52720080	rs1108842	A	C	13972.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,531:1.00:531
chr3	52721305	rs11177	G	A	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	52722266	rs3836492	AT	A	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:3,56:0.95:59
chr3	52722335	rs3774349	A	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	52725718	rs34449110	ATT	A	857.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.436;QD=17.87;ReadPosRankSum=1.579;SOR=1.700;set=HC	GT:AD:AF:DP	1/1:11,37:0.77:48
chr3	52726695	rs6762813	C	T	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	52727257	rs2289247	G	A	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	52728804	rs6976	C	T	6705.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	52740182	rs6617	C	G	10433.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr3	52741581	rs34636695	AT	A	319.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	52778347	rs2268026	T	C	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr3	52797634	rs1029871	G	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	52800284	rs2230535	T	C	7217.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	52802402	rs2230534	A	C	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	52804487	rs13071584	T	C	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	52812231	rs62255400	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr3	52814255	rs76203017	T	A	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.783;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.146;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:53,30:0.36:83
chr3	52814256	rs2302417	T	A	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.75;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	52815905	rs2710323	T	C	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	52818579	rs2239551	G	A	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	52819327	rs2268023	T	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	52820855	rs36051478	CGAAT	C	1137.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	52820981	rs678	A	T	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=43.12;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	52821011	rs1042779	A	G	10841.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.61;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	52821177	rs2286798	A	C	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	52821666	rs111477914	C	T	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=4.26;ReadPosRankSum=1.188;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:301,120:0.29:421
chr3	52821992	rs68094128	CT	C	18996.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.98;ReadPosRankSum=0.785;SOR=0.530;set=HC	GT:AD:AF:DP	1/1:18,661:0.97:679
chr3	52824610	rs6778329	G	A	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	52825462	rs1076425	A	G	7602.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr3	52825528	rs1075653	T	C	12157.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr3	52825585	rs9324	T	C	13782.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,534:1.00:534
chr3	52825912	rs7549	C	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.188;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:116,36:0.24:152
chr3	52831701	rs2240919	C	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	52833219	rs2535629	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	52833805	rs3617	C	A	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	52837793	rs4481150	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr3	52837855	rs2710331	T	C	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	52847601	rs2071044	C	T	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	52851137	rs2240917	T	C	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=0.645;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:43,71:0.62:114
chr3	52852060	rs2245538	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr3	52852410	rs41292864	G	A	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:98,185:0.65:283
chr3	52852538	rs4687657	G	T	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:84,147:0.64:231
chr3	52853340	rs7620907	G	C	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	52853401	rs3821831	C	T	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.856;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:171,59:0.26:230
chr3	52853747	rs2276815	C	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr3	52855229	rs2239547	T	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	52860936	rs2276817	C	T	7530.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:237,359:0.60:596
chr3	52861211	rs13072536	A	T	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:67,119:0.64:186
chr3	52864584	rs2071042	A	G	10021.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:245,461:0.65:706
chr3	52864693	rs2071041	T	G	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:34,96:0.74:130
chr3	52867288	rs4687661	A	T	8968.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	52867595	rs60332615	C	A	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:159,83:0.34:242
chr3	52867715	rs6787916	G	C	9869.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr3	52867811	rs6776876	A	T	8871.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	52868610	rs11922961	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr3	52868668	rs142854055	G	GCACACACA	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.368;QD=2.38;ReadPosRankSum=-0.304;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:169,43:0.20:212
chr3	52868670	rs62255421	G	A,GCACACACACACACA	6418.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.71;MQRankSum=-0.099;QD=30.28;ReadPosRankSum=-0.942;SOR=0.326;set=HC	GT:AD:AF:DP	1/2:1,132,79:0.62,0.37:212
chr3	52868716	rs77032405	GC	G	4833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.755;QD=6.49;ReadPosRankSum=2.381;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:504,241:0.32:745
chr3	52870618	rs4687663	T	A	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:75,123:0.62:198
chr3	52870729	rs11431693	C	CA	5611.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=36.68;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	52874446	rs6769789	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-1.868;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr3	52874716	rs11292171	GT	G	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=1.623;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr3	52874779	rs7638431	G	A	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	52877647	rs55829187	C	CA	3746.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	52877649	rs56008508	G	A	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	52877720	rs4687668	T	C	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	52878721	rs7650966	G	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	52878746	rs10663469	C	CAG	1570.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	52878825	rs7629528	C	A	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	52881634	rs5848962	T	TG	4617.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	52883654	rs3216716	CT	C	1741.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	52886559	.	C	T	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=1.926;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:62,65:0.51:127
chr3	52886605	rs2276825	T	C	2834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=-1.697;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:88,136:0.61:224
chr3	52886914	rs4687675	A	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	52960013	rs11360013	GC	G	5558.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	52960256	rs34584015	AG	A	2123.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:99,59:0.37:158
chr3	52960261	rs34585187	C	A	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:95,59:0.38:154
chr3	52968726	rs2257216	T	C	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=1.298;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr3	52968801	rs2710315	T	C	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	53003021	rs2245424	G	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr3	53125922	rs11242	T	C	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-0.627;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:53,95:0.64:148
chr3	53126143	rs2581786	G	A	2800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=-0.671;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:57,127:0.69:184
chr3	53126672	rs141077598	TTGCCCTGGACAAGGC	T	920.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr3	53133526	rs2581829	A	G	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:56,88:0.61:144
chr3	53139506	rs2564942	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.74;ReadPosRankSum=-0.168;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	53139506	.	CA	TG	87	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=87;QD=46.8226249541;SC=AAGAGCAAAGCAAGAAGGCCA;SbPval=1.0;Source=Platypus;TC=10;TCF=9;TCR=1;TR=3;WE=53139515;WS=53139504;set=Platypus	GT:AD:AF:DP	0/1:7,3:0.30:10
chr3	53139507	rs2581774	A	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.74;ReadPosRankSum=-0.168;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	53139644	rs75323042	T	C	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:115,177:0.61:292
chr3	53212574	rs2306571	C	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.141;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:73,24:0.25:97
chr3	53213538	rs2035451	C	G	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	53213815	rs3830263	C	CGTGT	736.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr3	53215141	rs2242305	C	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-1.425;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr3	53215799	rs7630325	G	A	5500.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:182,265:0.59:447
chr3	53215875	rs11130350	A	C	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:190,119:0.39:309
chr3	53216051	rs6445568	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	53217413	rs2306572	A	G	10774.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr3	53220215	rs2230494	G	A	13789.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,535:1.00:535
chr3	53220444	rs6793352	T	C	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	53220569	rs45596236	G	A	12300.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,475:1.00:475
chr3	53220763	rs3830265	GCTCAGAGC	G	14151.73	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr3	53223286	rs67531107	GCTGGT	G	8724.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr3	53223927	rs1075865	C	G	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr3	53224002	rs900495	T	C	5429.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	53259996	rs3816767	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	53260716	rs2279322	C	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	53263279	rs3736156	A	G	13377.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.126;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=1.178;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:1,529:1.00:530
chr3	53265581	rs17234092	C	T	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	53267133	rs6445573	G	C	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	53267155	rs2242301	G	A	5822.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	53274986	rs62255989	C	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	53321631	rs9628	A	C	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	53324819	rs201612547	ATGGCAC	A	3113.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	53324915	rs3732834	A	G	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	53529013	rs312479	T	A	432.79	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr3	53529140	rs312480	T	C	7825.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr3	53758049	rs2070617	G	A	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-1.133;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:130,74:0.36:204
chr3	53766026	rs2612033	T	C	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.339;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=1.251;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:146,78:0.35:224
chr3	53776995	rs2612026	T	C	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:71,44:0.38:115
chr3	53856653	rs2241808	C	T	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:172,102:0.37:274
chr3	53857676	rs17053532	C	T	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.487;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:66,97:0.60:163
chr3	53857803	rs12676	A	C	2425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=-2.317;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:233,139:0.37:372
chr3	53880789	rs2232332	A	G	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	53882663	rs1025690	G	A	7009.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr3	53882673	rs5849009	G	GT	6859.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	53883722	rs1025689	C	G	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,79:0.68:116
chr3	53883910	rs4687751	C	T	302.31	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr3	53890787	rs3821867	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr3	53892553	rs13315972	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr3	53892641	rs9840079	T	G	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.538;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:80,59:0.42:139
chr3	53893994	rs3733077	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=1.383;QD=8.42;ReadPosRankSum=0.819;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	53899276	rs1043261	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:66,39:0.37:105
chr3	53905308	rs1046677	T	C	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:211,117:0.36:328
chr3	53906334	rs2289204	C	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=1.427;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:57,25:0.30:82
chr3	53906513	rs4687757	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:197,79:0.29:276
chr3	53910118	rs744277	A	G	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:153,59:0.28:212
chr3	53910121	rs5849012	AG	A	902.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=0.669;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:147,57:0.28:204
chr3	53910899	rs5849013	GA	G	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=-1.141;QD=2.96;ReadPosRankSum=-0.594;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr3	53910919	rs11419180	G	GT	390.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	53912341	rs3733081	C	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:92,56:0.38:148
chr3	53921028	rs10440151	T	G	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-1.554;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:65,33:0.34:98
chr3	53922620	rs3816144	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:88,56:0.39:144
chr3	53925775	rs2276847	C	T	4489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-0.799;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:499,268:0.35:767
chr3	53925849	rs2276848	C	T	5729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=1065;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=1.071;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:712,351:0.33:1063
chr3	54157710	rs2290132	A	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	54354510	rs9879885	T	C	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-0.524;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:143,84:0.37:227
chr3	54420721	.	GTT	G	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-0.810;QD=1.27;ReadPosRankSum=3.236;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:85,19:0.18:104
chr3	54604188	rs2251788	T	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr3	54676441	rs3832224	CA	C	300.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	54913354	rs35536476	CT	C	956.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.438;QD=12.43;ReadPosRankSum=0.193;SOR=0.637;set=HC	GT:AD:AF:DP	1/1:10,67:0.87:77
chr3	54919272	rs1405330	A	G	5412.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	54928496	rs1526595	T	C	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	54952359	.	CTTTTTT	C	88.25	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	54953022	rs3832225	CTT	C	134.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	54961949	rs4245920	C	T	6842.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	54962013	rs56327704	A	C	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	55003733	rs881820	G	T	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	55038898	rs4955827	A	G	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	55107944	rs17323097	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:109,56:0.34:165
chr3	55107996	rs111833275	TTTCA	T	466.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:56,16:0.22:72
chr3	55108055	rs358076	G	A	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.09;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	55108055	.	GTTAGAGAGG	ATTAGAGAGC,ATTAGAGAGG	450	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=21;MMLQ=26;NF=4,16;NR=3,14;PP=87,450;QD=20.066839266;SC=TCGTTCTTACGTTAGAGAGGG;SbPval=0.72;Source=Platypus;TC=30;TCF=16;TCR=14;TR=7,30;WE=55108072;WS=55108045;set=Platypus	GT:AF:DP	0/1:0.23:30
chr3	55108064	rs41277463	G	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.263;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr3	55108149	rs17054785	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:191,75:0.28:266
chr3	55108188	rs35471424	A	G	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:299,156:0.34:455
chr3	55108234	rs71948046	CACTGACTGAGATGTTCTCTT	C	5710.73	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:345,162:0.32:507
chr3	55108358	rs358077	A	G	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr3	55514766	rs73075443	A	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:30,63:0.68:93
chr3	55733390	rs4955865	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:89,30:0.25:119
chr3	55989276	.	TTGTGTGTGTGTGTG	T,TTG	3790.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;QD=40.33;SOR=1.942;set=HC	GT:AD:AF:DP	1/2:0,21,73:0.22,0.78:94
chr3	56019905	rs6445762	C	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr3	56020159	rs7613818	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	56037025	rs5849124	C	CAT	1790.73	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:118,51:0.30:169
chr3	56037241	rs35658351	CA	C	3269.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	56037249	rs34984094	A	AG	3219.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	56052839	rs3816575	G	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:117,44:0.27:161
chr3	56330401	rs74804174	G	T	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:144,75:0.34:219
chr3	56591178	rs73079891	A	G	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,56:0.63:89
chr3	56591278	rs150150392	T	TGGGGTAAGCA	8048.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.32;QD=40.65;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	56593543	rs12486047	C	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	56593680	rs11130525	T	C	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	56595153	rs17825529	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-3.340;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr3	56597688	rs6781293	A	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr3	56597693	rs71309962	G	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr3	56597954	rs6769055	C	T	6469.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr3	56599159	rs73081810	T	C	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=25.68;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	56599208	rs55831745	G	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	56599258	rs10687224	G	GTATT	845.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	56601175	rs112310084	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	56605404	rs139586078	TA	T	245.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.55;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	56627048	rs1388256	A	G	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	56627598	rs1491170	A	G	7241.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr3	56628031	rs7637449	G	A	14815.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,580:1.00:580
chr3	56674190	rs1489949	A	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	56763228	rs1009119	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr3	56763316	rs1565376	G	A	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:132,84:0.39:216
chr3	56763328	rs1565377	T	C	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:159,104:0.40:263
chr3	56763525	rs1009118	A	G	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.868;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:287,123:0.30:410
chr3	56763619	rs6765444	A	G	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=1.226;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:130,74:0.36:204
chr3	56766435	rs3732511	C	G	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=2.812;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:146,75:0.34:221
chr3	56785556	rs6792241	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr3	56787451	rs3821412	C	T	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.641;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:143,55:0.28:198
chr3	56807854	.	T	TA	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=2.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.964;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:19,35:0.65:54
chr3	56808956	rs34038168	A	AC	2158.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.04;MQRankSum=0.000;QD=35.39;ReadPosRankSum=1.520;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:2,59:0.97:61
chr3	56835761	rs3732508	G	A	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:245,129:0.34:374
chr3	56932708	rs7633179	G	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	57011234	rs13080107	T	C	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:102,163:0.62:265
chr3	57131529	rs6764188	A	C	12514.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.168;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.75;ReadPosRankSum=-0.174;SOR=0.305;set=HC	GT:AD:AF:DP	1/1:1,485:1.00:486
chr3	57132200	rs2291462	A	G	9786.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr3	57137090	rs2247656	A	G	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr3	57138419	rs6780995	G	A	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	57139833	rs1545982	G	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.89;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	57139972	rs1545981	A	G	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	57140108	rs2035654	G	A	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr3	57148968	rs11916303	C	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	57233661	rs12715498	A	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	57233679	rs143889572	ATAAAT	A	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=43.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	57276258	rs11346575	GA	G	845.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	57283607	rs141783621	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr3	57294085	rs10510791	C	G	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	57294884	rs150865255	CAAATT	C	1367.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	57321916	rs883244	T	G	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	57323170	rs528035	A	G	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.300;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	57326077	rs77118650	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:100,70:0.41:170
chr3	57335705	rs200349291	TACACACACACACAC	T,TAC	1437.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.94;SOR=4.921;set=HC	GT:AD:AF:DP	1/2:0,16,20:0.44,0.56:36
chr3	57335876	rs4060726	C	T	11471.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.761;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.78;ReadPosRankSum=1.481;SOR=0.354;set=HC	GT:AD:AF:DP	1/1:1,444:1.00:445
chr3	57386148	rs12053975	C	G	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=1.446;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:43,32:0.43:75
chr3	57388037	rs11429401	C	CT	710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.912;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:97,56:0.37:153
chr3	57388114	rs6445873	C	T	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:97,58:0.37:155
chr3	57394309	rs4681729	T	G	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.336;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:57,52:0.48:109
chr3	57401030	rs9811855	A	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.345;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr3	57414071	rs4681982	G	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr3	57414434	rs4462937	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:110,60:0.35:170
chr3	57419299	rs77987320	G	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr3	57419497	rs6773904	C	T	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=2.994;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:161,70:0.30:231
chr3	57422824	rs4234394	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=1.299;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr3	57430988	rs6768943	G	A	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:108,66:0.38:174
chr3	57431740	rs139063171	ATAAATAAATAAT	A	2053.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=6.558;QD=13.25;ReadPosRankSum=-0.117;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:90,65:0.42:155
chr3	57431985	rs2121743	G	A	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.479;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:226,99:0.30:325
chr3	57432064	rs2121742	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=1.234;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr3	57443817	rs6768661	T	C	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.852;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:36,28:0.44:64
chr3	57456371	rs9871422	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr3	57457123	rs6445886	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:74,23:0.24:97
chr3	57469272	rs9864150	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr3	57475351	rs6806444	T	G	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:59,48:0.45:107
chr3	57488279	rs10662782	T	TTTC	468.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr3	57509081	.	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=0.728;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr3	57509103	rs6768974	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=0.812;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr3	57542173	rs2241988	C	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:138,76:0.36:214
chr3	57562859	rs142795487	C	T	233.78	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr3	57563120	rs80155592	GA	G	1209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.107;QD=12.47;ReadPosRankSum=1.424;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:36,61:0.63:97
chr3	57582718	rs57877028	GAAA	G	3578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.729;QD=9.75;ReadPosRankSum=0.074;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:261,106:0.29:367
chr3	57613814	rs77006676	CTG	C	1004.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr3	57627500	rs9873675	T	C	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	57627580	rs9816093	A	C	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	57644825	rs55790297	C	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:191,95:0.33:286
chr3	57743337	rs13400	C	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr3	57846577	rs2306056	C	A	181.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.230;QD=16.53;ReadPosRankSum=-0.473;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr3	57908594	rs3832206	CT	C	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.173;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:33,53:0.62:86
chr3	57994719	rs1658338	T	A	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:74,60:0.45:134
chr3	58080505	rs7644723	G	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr3	58081888	rs1522384	T	C	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:166,110:0.40:276
chr3	58083446	rs939882	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	58089516	rs6445945	A	G	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	58089585	rs6445946	T	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr3	58089594	rs3215311	GT	G	717.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr3	58089851	rs1522385	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,61:0.64:95
chr3	58089877	rs1522386	A	G	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	58092346	rs2177153	A	G	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:32,67:0.68:99
chr3	58094157	rs2259091	A	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:122,51:0.29:173
chr3	58094852	rs7634236	C	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:136,77:0.36:213
chr3	58095466	rs2708318	G	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr3	58095500	rs2686635	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.780;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr3	58109162	rs1131356	G	A	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:282,165:0.37:447
chr3	58110260	rs114342439	C	G	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-0.309;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:29,64:0.69:93
chr3	58111285	rs3732633	T	G	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:171,119:0.41:290
chr3	58112440	rs2362903	A	G	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	58112488	rs2362904	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:61,22:0.27:83
chr3	58112556	rs2362905	G	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=0.331;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr3	58116358	rs4475005	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr3	58116369	rs1882692	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr3	58118555	rs12632456	G	A	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-1.357;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:102,50:0.33:152
chr3	58118700	rs12638356	A	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.785;QD=2.73;ReadPosRankSum=-0.579;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:124,37:0.23:161
chr3	58121626	rs6445948	T	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	58127827	rs34336464	C	T	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr3	58131515	rs7355798	C	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr3	58133803	rs66977380	AT	A	225.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr3	58138528	rs9884098	G	A	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:55,124:0.69:179
chr3	58145263	rs12634123	G	A	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	58145348	rs116826041	T	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:30,86:0.74:116
chr3	58154327	rs8640	C	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.911;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:107,33:0.24:140
chr3	58155230	rs9870243	C	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr3	58155250	.	T	C	910.77	.	AC=1;AF=0.500;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr3	58156176	rs4681660	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	58179318	rs9812109	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	58186911	rs4234389	A	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr3	58194051	rs3732631	C	A	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	58196639	rs2292677	C	T	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	58270963	rs6774235	T	C	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	58355273	rs9867320	G	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr3	58368219	rs10662181	C	CT	176.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.73;ReadPosRankSum=-0.157;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr3	58368449	rs11917591	T	C	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:81,135:0.62:216
chr3	58376992	rs11923253	G	A	2928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=0.408;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:56,139:0.71:195
chr3	58382846	rs3191903	C	T	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:110,124:0.53:234
chr3	58383174	rs55692656	A	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	58384995	rs11712213	G	A	4538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-0.794;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:125,216:0.63:341
chr3	58385194	rs4075152	T	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr3	58389462	rs4339119	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:50,71:0.59:121
chr3	58394850	rs56232415	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr3	58395490	rs140856155	G	GT	654.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.924;MLEAC=1;MLEAF=0.500;MQ=61.01;MQRankSum=2.359;QD=11.69;ReadPosRankSum=-1.035;SOR=1.272;set=HC	GT:AD:AF:DP	0/1:21,35:0.62:56
chr3	58395501	rs34734687	G	GA	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=-1.360;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr3	58395863	rs56384862	A	G	4052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=0.311;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:103,190:0.65:293
chr3	58395891	rs4681851	C	G	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-1.603;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:126,75:0.37:201
chr3	58398447	rs62258134	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr3	58398466	rs12635366	C	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr3	58398813	rs13071422	A	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	58409126	rs6767498	C	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr3	58409173	rs4681852	A	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:75,32:0.30:107
chr3	58409300	rs35853090	G	GTT	8232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.406;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.027;QD=23.13;ReadPosRankSum=2.711;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:122,234:0.66:356
chr3	58410554	rs34579268	C	T	3634.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:80,168:0.68:248
chr3	58415590	rs2070662	C	A	3874.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:105,176:0.63:281
chr3	58416535	rs1126551	C	T	3014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-1.072;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:90,143:0.61:233
chr3	58416538	rs4264746	T	C	8657.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.84;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	58416770	rs138623728	T	TTTA	737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.530;QD=33.53;ReadPosRankSum=0.338;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr3	58417416	rs62259772	C	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr3	58516383	rs4387990	G	A	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:225,121:0.35:346
chr3	58520306	rs7611026	G	C	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	58520859	rs4681862	A	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	58552950	rs1139701	C	T	2396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.211;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:178,127:0.42:305
chr3	58552997	rs1043942	C	A	3667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.549;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:108,176:0.62:284
chr3	58555343	rs7632668	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr3	58555386	rs7609991	G	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:43,70:0.62:113
chr3	58572577	rs17059434	C	G	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:144,200:0.58:344
chr3	58572625	rs80312641	G	A	3726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-0.890;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:125,180:0.59:305
chr3	58575110	rs6445991	A	G	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:22,62:0.74:84
chr3	58575158	rs139383869	ATG	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-1.534;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr3	58612485	rs11708352	G	A	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=0.131;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr3	58612598	rs11708342	C	T	3689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=0.015;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:89,170:0.66:259
chr3	58621935	rs6791782	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	58625875	rs33966924	C	A	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:130,71:0.35:201
chr3	58625975	rs3749287	C	G	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,62:0.54:115
chr3	58631184	rs111621495	G	GAAATA	2841.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	58635197	rs9811989	G	A	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	58703383	.	G	GA	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.413;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:67,28:0.29:95
chr3	58855779	.	GTGTC	G	112.73	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:62,8:0.11:70
chr3	59908126	rs1385816	A	G	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr3	59997112	rs1130972	G	A	1922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-2.067;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:284,123:0.30:407
chr3	60522571	.	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.990;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:131,25:0.16:156
chr3	60898271	rs6793737	G	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:34,54:0.61:88
chr3	61734539	rs3821880	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr3	62153605	rs61078615	G	GT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.99;ReadPosRankSum=-0.632;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr3	62229553	rs1352882	C	T	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	62258871	rs35559789	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr3	62278071	rs75752432	C	T	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=-0.143;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:151,91:0.38:242
chr3	62319104	rs76027555	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	62357146	rs71296764	G	A	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:175,74:0.30:249
chr3	62431387	.	G	GA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-1.785;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr3	62431402	rs73840192	C	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-1.652;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr3	62431415	rs6791296	T	C	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	62450931	rs116208192	T	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	62451935	rs6445273	T	C	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	62477233	rs35911391	A	AACAC	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.35;ReadPosRankSum=1.474;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	62478194	rs13325751	C	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:113,47:0.29:160
chr3	62498378	rs1376917	G	A	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:40,58:0.59:98
chr3	62501634	rs9863956	C	T	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr3	62518515	rs17066532	A	T	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr3	62536388	rs62243510	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	62556622	rs833663	A	G	9997.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr3	62571037	rs2659467	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr3	62578289	rs200387841	C	T	1514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=1.705;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:327,111:0.25:438
chr3	62612013	rs2248008	C	T	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	62612145	rs2248013	C	A	10186.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr3	62612195	rs2248019	G	T	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.462;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:393,154:0.28:547
chr3	62612280	rs2367310	C	T	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	62612294	rs2367311	T	C	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	62612309	rs2367312	G	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	62612342	rs2248023	T	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	62612385	rs1349591	G	T	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	62631553	rs4588354	G	T	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.616;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:70,27:0.28:97
chr3	62636826	rs4688302	C	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	62647904	rs11712073	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr3	62647928	rs6770658	A	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	62648142	rs1354781	T	C	5041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-0.255;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:129,237:0.65:366
chr3	62739092	rs478123	A	G	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	63437977	rs6793874	C	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr3	63466382	rs6772726	G	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr3	63596277	rs6445369	A	C	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	63649259	rs7612738	G	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	63649492	rs7634688	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr3	63821914	rs2637982	C	G	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	63965948	rs66979216	T	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.47;ReadPosRankSum=-1.534;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	63974084	rs13075134	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.13;ReadPosRankSum=1.960;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	63982082	rs3774729	G	A	4056.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:121,194:0.62:315
chr3	64005226	rs2888013	A	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr3	64008510	rs3846221	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr3	64009432	rs3836531	AT	A	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr3	64133350	rs27673	A	G	5913.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	64518994	rs1017537	T	C	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	64525171	rs11130968	G	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	64525177	rs11130969	C	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	64526610	rs11130970	G	A	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	64526651	rs3841969	CCAATGTG	C	593.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	64526717	rs3796384	G	C	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	64526942	rs3796383	A	C	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	64527321	rs1373163	T	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	64527336	rs1036919	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	64527378	rs1036918	G	A	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	64527465	rs1036917	C	T	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	64554254	rs7635677	T	C	1911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=-0.393;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:176,109:0.38:285
chr3	64580169	rs13320542	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:79,46:0.37:125
chr3	64589851	rs9985304	A	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:304,108:0.26:412
chr3	64600829	rs56869336	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.561;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr3	64617042	rs6768487	G	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-1.322;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr3	64617070	rs6445420	C	T	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=5.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-3.426;SOR=1.544;set=HC	GT:AD:AF:DP	0/1:50,21:0.30:71
chr3	64617699	rs7640062	A	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	64619048	rs11717158	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	64627448	rs9832057	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:90,48:0.35:138
chr3	64627752	rs7632802	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr3	64633504	rs12715589	A	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr3	64640206	rs11326156	TA	T	6510.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=27.82;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	64667059	rs73124286	G	T	2444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=4.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=0.938;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:70,121:0.63:191
chr3	65344554	rs79106195	C	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr3	65350694	rs55638583	A	G	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:68,122:0.64:190
chr3	65353448	rs7634490	G	A	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	65355479	rs9845952	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:155,59:0.28:214
chr3	65416648	rs4688566	C	A	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	65425560	rs142043619	T	TCTG	6282.73	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:59,297:0.83:356
chr3	65439050	rs370264784	GA	G	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=3.839;QD=1.29;ReadPosRankSum=-2.399;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr3	65456198	rs57455654	G	GA	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=7.720;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=10.32;ReadPosRankSum=0.567;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr3	65479068	rs7641222	A	C	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	65583600	.	TGG	T,TGGG	4261.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=285;set=Intersection	GT:AF:DP	1/2:0.41,0.47:196
chr3	65595659	.	A	AATAGACCATTCTGAGGTAGAAGGAAAGGAAGGAAAGAGAGAAGGGGAAGGAACTGGGAGAAGAGAAGGGGAGAGGGAGAGAGGAAGGGAAAGAG	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.546;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=31.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-3.208;SOR=4.797;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	65607592	.	T	TCACACACACACACACA	423.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr3	65607637	rs3749455	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr3	65607803	rs59095537	A	G	3360.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:99,171:0.63:270
chr3	66023592	rs28696109	A	G	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	66271617	rs36196715	G	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr3	66287056	rs146159281	G	A	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:92,166:0.64:258
chr3	66293851	rs1678092	T	C	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	66354911	rs813636	G	C	9441.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr3	66396845	rs332354	G	A	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	66406410	rs75462746	A	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.26;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	66406415	rs783129	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.95;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	66406605	rs79448160	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	66413111	rs332387	G	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	66413130	rs332386	T	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	66419956	rs13874	C	T	6626.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	66420862	rs59621621	C	T	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr3	66428234	rs116677829	C	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	66430870	rs61754218	G	A	9634.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:1,372:1.00:373
chr3	66432680	rs332371	A	G	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr3	66433312	rs900172	A	G	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	66433676	rs900171	A	G	11887.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr3	66434372	rs4071605	T	TCACACACACACA	1578.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=43.85;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	66460819	rs76247263	C	A	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	66463251	rs4856924	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	66550756	rs1403625	G	C	11027.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr3	66550762	rs1403626	G	C	11078.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	67048762	rs4856833	T	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	67276059	rs9868022	G	T	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	67411103	rs902320	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.519;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr3	67411166	rs902321	A	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.810;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr3	67426125	rs1065399	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=0.431;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr3	67426281	rs35494829	T	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr3	67459492	rs9824745	G	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=26.33;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	67459509	rs138527816	AATGGGTTTTAGTTCTTTAC	A	884.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.428;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.850;QD=21.58;ReadPosRankSum=0.822;SOR=1.785;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr3	67548852	rs7630024	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr3	68587884	rs3828366	A	C	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.946;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:104,57:0.35:161
chr3	69036524	rs11331317	GA	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=1.307;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr3	69038088	rs13085120	A	G	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	69074930	rs2279936	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	69077486	rs139736121	A	G	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-0.117;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	69082708	rs1532918	C	G	2453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=-1.651;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:190,131:0.41:321
chr3	69091640	rs9985501	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	69091716	rs2271120	T	C	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	69104695	rs6549179	T	A	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	69104752	rs6549180	C	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	69112049	rs2289245	C	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,48:0.98:49
chr3	69112658	.	CA	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=12.057;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.249;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:66,25:0.27:91
chr3	69113153	rs13090606	T	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	69127133	rs3772979	T	C	7669.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr3	69137539	rs3853159	T	C	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	69153854	rs7038	G	T	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	69168747	rs115972674	A	G	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:236,114:0.33:350
chr3	69225588	rs11128118	T	G	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	69225875	rs9872199	T	A	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	69225911	rs9868107	A	G	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	69229976	rs12054011	G	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	69230026	rs9818314	T	C	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	69230061	rs9831516	G	A	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr3	69230801	rs9836305	G	A	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	69242770	rs11310698	CA	C	1703.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:14,100:0.88:114
chr3	69244162	rs9853587	G	A	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	69245454	rs9310141	T	C	8609.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr3	69245623	rs73095903	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	69245949	rs9860235	G	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	69246152	rs13059488	A	G	8837.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr3	69246274	rs13059687	A	G	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr3	69265291	rs7643175	T	C	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	69265304	rs77475566	C	CA	2401.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	69265371	rs62254460	G	C	8661.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.70;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr3	69267578	rs4855301	A	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	69271032	rs62254461	G	A	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	69271206	rs6549189	T	C	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	69273656	rs9848940	G	T	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	69299233	rs4361282	C	G	7412.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr3	69336695	.	G	A	77	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5003;HP=3;HapScore=2;MGOF=9;MMLQ=27;MQ=60.0;NF=5;NR=0;PP=77;QD=22.3542425094;SC=CAGGATTCCCGTGCAGATGGT;SbPval=1.0;Source=Platypus;TC=8;TCF=7;TCR=1;TR=5;WE=69336703;WS=69336685;set=Platypus	GT:AD:AF:DP	1/0:3,5:0.62:8
chr3	69336740	rs4855381	A	G	186.98	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr3	69351460	rs34523072	AAG	A	2383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=2.112;QD=19.38;ReadPosRankSum=0.383;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:51,72:0.59:123
chr3	69359730	rs142506790	CACAGAGAGAGAGAG	C	361.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr3	69359734	rs13324422	G	C	143.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.60;MQRankSum=-2.600;QD=2.00;ReadPosRankSum=2.733;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr3	69359736	rs62254067	G	C	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.60;MQRankSum=-3.409;QD=5.62;ReadPosRankSum=3.749;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr3	69359738	rs62254068	G	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=-3.409;QD=6.66;ReadPosRankSum=3.576;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr3	69359740	rs62254069	G	C	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=-3.409;QD=6.68;ReadPosRankSum=3.418;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr3	69359742	.	G	C	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=-3.409;QD=6.68;ReadPosRankSum=3.159;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr3	69359744	.	G	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=-3.277;QD=5.64;ReadPosRankSum=3.214;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr3	69359746	rs76180481	G	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=-2.707;QD=2.86;ReadPosRankSum=2.636;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr3	69362706	rs1483895	C	T	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:151,95:0.39:246
chr3	69362722	rs2314992	C	A	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:70,113:0.62:183
chr3	69988437	.	G	GT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.582;QD=1.78;ReadPosRankSum=-0.153;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr3	71007347	.	C	CA	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DP=516;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.924;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:404,86:0.18:490
chr3	71007361	rs1053797	G	T	7249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.767;QD=12.18;ReadPosRankSum=2.028;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:219,376:0.63:595
chr3	71008341	rs112773801	G	GT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.486;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr3	71015021	rs7638391	G	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	71019750	rs9874207	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.61;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	71247572	rs56850311	A	T	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=1.203;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:28,44:0.61:72
chr3	71247576	rs9855825	A	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-1.355;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr3	72495593	rs11460842	T	TA	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.107;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=7.12;ReadPosRankSum=0.943;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:41,58:0.59:99
chr3	72495777	rs13066407	C	G	10346.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr3	72495945	rs13088771	A	G	11904.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr3	72799703	rs35178407	C	T	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:105,179:0.63:284
chr3	72873809	rs6786469	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-1.004;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	72895345	rs1502754	G	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr3	73004157	rs1532190	T	G	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=1.890;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:37,38:0.51:75
chr3	73016974	rs3821379	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	73024350	rs1052278	C	A	7499.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr3	73046508	rs9834246	G	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	73046544	rs9310254	T	C	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	73046561	rs9873229	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:68,110:0.62:178
chr3	73096591	rs71277513	A	ATAAT	1553.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=41.99;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	73110076	rs726029	G	A	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	73111368	rs2231924	T	C	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	73111481	rs3832186	C	CA	2672.73	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:209,99:0.32:308
chr3	73111809	rs2231926	A	G	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	73111973	rs2231928	A	G	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	73111998	rs1060584	C	T	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	73112919	rs3841614	T	TA	2132.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.15;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	73112974	rs11708712	A	T	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	73433369	rs3205537	G	A	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:72,126:0.64:198
chr3	73433494	rs13091636	T	C	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:71,138:0.66:209
chr3	73437112	rs6549532	A	G	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:82,107:0.57:189
chr3	73437225	rs3830251	T	TA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=1.863;QD=6.49;ReadPosRankSum=-0.549;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	73440108	rs35427155	G	GA	939.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=1.570;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:28,56:0.67:84
chr3	73453201	rs2291464	C	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	73453325	rs2291463	C	T	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:51,93:0.65:144
chr3	73482762	rs112930676	T	G	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:73,153:0.68:226
chr3	73651383	rs6809923	A	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.919;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:69,24:0.26:93
chr3	73651469	rs6797804	C	T	1867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-0.100;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:218,114:0.34:332
chr3	73651621	rs11343439	TA	T	1405.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr3	73673578	rs6763344	G	C	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	74315580	rs615824	C	G	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=1.745;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:160,93:0.37:253
chr3	74334560	rs143021649	C	T	3057.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:93,148:0.61:241
chr3	74413676	rs6549590	T	C	3222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-0.648;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:274,183:0.40:457
chr3	74474166	rs7619184	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.20;ReadPosRankSum=-0.812;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	75386297	rs6769147	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr3	75386380	rs4677501	T	G	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	75679893	rs200917196	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.34;MQRankSum=-2.831;QD=1.09;ReadPosRankSum=1.936;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:55,10:0.15:65
chr3	75679937	rs141031386	G	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:159,36:0.18:195
chr3	75679958	rs200114452	C	T	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=46.24;MQRankSum=-3.038;QD=4.73;ReadPosRankSum=-1.679;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:226,50:0.18:276
chr3	75679963	rs201125883	C	T	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=46.34;MQRankSum=-1.086;QD=2.19;ReadPosRankSum=-0.628;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:237,62:0.21:299
chr3	75679973	rs183720508	A	G	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=3.731;MLEAC=1;MLEAF=0.500;MQ=46.42;MQRankSum=-4.706;QD=4.32;ReadPosRankSum=-1.720;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:291,70:0.19:361
chr3	75679993	rs202177109	C	T	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.41;MQRankSum=-1.220;QD=2.99;ReadPosRankSum=-2.447;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:316,101:0.24:417
chr3	75680010	rs75174508	T	C	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=2.420;MLEAC=1;MLEAF=0.500;MQ=46.30;MQRankSum=-4.200;QD=1.74;ReadPosRankSum=2.672;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:366,73:0.17:439
chr3	75680088	rs200387791	C	T	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=46.12;MQRankSum=-0.940;QD=5.78;ReadPosRankSum=-2.278;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:109,45:0.29:154
chr3	75680109	rs199802601	G	T	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=45.66;MQRankSum=-0.256;QD=5.66;ReadPosRankSum=0.370;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr3	75680133	rs200731407	G	T	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=7.079;MLEAC=1;MLEAF=0.500;MQ=45.02;MQRankSum=-0.572;QD=15.56;ReadPosRankSum=-0.516;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	75786586	rs201915219	G	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.927;MLEAC=1;MLEAF=0.500;MQ=47.02;MQRankSum=-4.857;QD=2.01;ReadPosRankSum=-0.501;SOR=1.622;set=HC	GT:AD:AF:DP	0/1:50,7:0.12:57
chr3	75786593	.	C	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=3.908;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=-5.127;QD=1.78;ReadPosRankSum=0.220;SOR=1.703;set=HC	GT:AD:AF:DP	0/1:59,7:0.11:66
chr3	75786598	rs199898382	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.190;MLEAC=1;MLEAF=0.500;MQ=47.13;MQRankSum=-5.632;QD=2.08;ReadPosRankSum=-0.373;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:65,9:0.12:74
chr3	75786608	.	C	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.928;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.175;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=-5.502;QD=1.76;ReadPosRankSum=0.248;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:68,9:0.12:77
chr3	75786620	rs144106206	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.575;MLEAC=1;MLEAF=0.500;MQ=49.22;MQRankSum=-2.866;QD=2.00;ReadPosRankSum=-0.093;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:84,13:0.13:97
chr3	75786662	rs202184453	A	T	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.804;MLEAC=1;MLEAF=0.500;MQ=49.72;MQRankSum=-5.837;QD=6.22;ReadPosRankSum=-2.127;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:116,31:0.21:147
chr3	75786672	rs200017345	C	T	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=4.382;MLEAC=1;MLEAF=0.500;MQ=49.42;MQRankSum=-6.565;QD=6.77;ReadPosRankSum=-1.967;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:135,39:0.22:174
chr3	75786681	rs111677009	G	A	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.356;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=5.382;MLEAC=1;MLEAF=0.500;MQ=49.77;MQRankSum=-5.758;QD=6.27;ReadPosRankSum=0.421;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:158,40:0.20:198
chr3	75786684	rs201345045	G	T	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.962;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=50.14;MQRankSum=-5.736;QD=5.96;ReadPosRankSum=-0.044;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:168,46:0.21:214
chr3	75786737	.	A	T	2566	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=1;MGOF=19;MMLQ=27;MQ=53.26;NF=25;NR=22;PP=2566;QD=20;SC=GTTTTTCCACATTCATTACAT;SbPval=0.65;Source=Platypus;TC=132;TCF=66;TCR=66;TR=47;WE=75786768;WS=75786727;set=Platypus	GT:AD:AF:DP	0/1:85,47:0.36:132
chr3	75786748	.	C	T	2725	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=26;MQ=54.09;NF=28;NR=25;PP=2725;QD=20;SC=TTCATTACATCCATACGGTTT;SbPval=0.43;Source=Platypus;TC=138;TCF=68;TCR=70;TR=53;WE=75786768;WS=75786727;set=Platypus	GT:AD:AF:DP	0/1:85,53:0.38:138
chr3	75786760	.	TC	T	2729	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=4;HapScore=1;MGOF=19;MMLQ=24;MQ=54.68;NF=8;NR=24;PP=2729;QD=20;SC=ATACGGTTTTTCCCCGTGTGA;SbPval=0.56;Source=Platypus;TC=99;TCF=25;TCR=74;TR=32;WE=75786768;WS=75786727;set=Platypus	GT:AD:AF:DP	0/1:67,32:0.32:99
chr3	75786833	rs139448820	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:171,48:0.22:219
chr3	75786845	rs62250105	T	C	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:143,53:0.27:196
chr3	75786888	rs1615736	C	T	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:131,75:0.36:206
chr3	75786894	rs144168413	GT	G	2695.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:133,75:0.36:208
chr3	75790860	rs150203551	C	T	4874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=-15.716;QD=7.39;ReadPosRankSum=0.267;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:509,151:0.23:660
chr3	75790878	.	A	ATG	3738.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.37;MQRankSum=-13.855;QD=7.48;ReadPosRankSum=-0.845;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:385,115:0.23:500
chr3	75790879	.	C	CCAACTCCTGTAATGATAGCAGGCTGTTATAAGTCTCCAGCATCACATCCCTGTACAGGGTCCTCTGAGCATTATCCAGGTCCTGCCACTCCTCCCAGGTGAAGTGCACAGCAACATCTTCAAAAGAT	3686.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.083;ClippingRankSum=0.000;DP=488;ExcessHet=3.0103;FS=15.967;MLEAC=1;MLEAF=0.500;MQ=47.35;MQRankSum=-8.784;QD=7.65;ReadPosRankSum=2.779;SOR=2.010;set=HC	GT:AD:AF:DP	0/1:373,109:0.23:482
chr3	75986663	rs12171318	C	A	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr3	75986686	rs62269817	A	G	3227.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:56,97:0.63:153
chr3	75986695	rs79015247	G	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-1.914;QD=1.52;ReadPosRankSum=0.091;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:133,30:0.18:163
chr3	75986717	rs78834776	G	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-4.554;QD=2.06;ReadPosRankSum=1.379;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:170,45:0.21:215
chr3	75986719	rs62269818	G	C	4720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.898;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-9.416;QD=21.65;ReadPosRankSum=1.444;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:88,130:0.60:218
chr3	75986741	.	G	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-4.726;QD=0.35;ReadPosRankSum=1.587;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:240,39:0.14:279
chr3	75986794	rs80235520	G	A	3309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.119;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-10.720;QD=12.78;ReadPosRankSum=-2.443;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:151,108:0.42:259
chr3	75986813	rs77101234	T	A	2588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-11.630;QD=12.82;ReadPosRankSum=-6.463;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:132,70:0.35:202
chr3	75986833	rs73123284	C	T	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-11.675;QD=5.06;ReadPosRankSum=-5.306;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:115,24:0.17:139
chr3	75986874	rs7610755	G	C	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=26.17;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	76484183	rs3849491	T	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	77607070	rs5850333	A	AC	3738.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:34,121:0.78:155
chr3	77613987	.	TTG	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=1.966;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr3	77623904	rs143689930	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr3	77645946	rs35328861	CT	C	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.013;QD=7.87;ReadPosRankSum=1.507;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr3	77645984	rs775718	A	G	311.28	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr3	77671721	rs2272163	C	A	73.81	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr3	77681865	rs1451617	T	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	78663956	rs1027832	G	A	6036.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.02;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	78664093	rs1027833	C	T	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	78666765	rs9839790	T	C	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	78667311	rs115034909	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.96;ReadPosRankSum=-0.842;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr3	78676422	rs7614084	G	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	78676467	rs7636043	A	G	5763.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr3	78680578	rs6548592	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	78700779	rs3925684	C	A	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	78709068	rs76880412	CTTTT	C	1139.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr3	78711350	rs9864412	T	C	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	78717508	rs2255164	G	A	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	78737962	rs967454	G	A	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	78796078	rs2304503	C	A	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	81584268	rs60133692	CT	C	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.139;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.709;QD=8.64;ReadPosRankSum=0.079;SOR=1.362;set=HC	GT:AD:AF:DP	0/1:13,44:0.77:57
chr3	81643167	rs2172397	T	C	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	81698130	rs2229519	T	C	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=0.597;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr3	81792592	rs3772889	T	C	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=0.185;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:25,51:0.67:76
chr3	81810702	rs11391701	A	AG	1458.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	81810725	rs2290081	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr3	85984830	rs36080783	T	C	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	87100309	rs2575753	T	C	6383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.52;MQRankSum=-2.856;QD=13.67;ReadPosRankSum=0.133;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:158,309:0.66:467
chr3	87100434	rs7619398	G	A	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.347;MLEAC=1;MLEAF=0.500;MQ=50.55;MQRankSum=0.538;QD=17.08;ReadPosRankSum=-0.702;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:23,64:0.74:87
chr3	87100447	rs9831869	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=53.29;MQRankSum=-1.139;QD=4.58;ReadPosRankSum=-0.824;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr3	87100893	rs2256481	G	A	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,65:0.65:100
chr3	87100951	rs34075162	AG	A	799.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:83,33:0.28:116
chr3	87275442	rs72591121	G	GA	58	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	87276699	rs2279720	C	T	2245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.623;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:280,137:0.33:417
chr3	87295049	rs11540913	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	87299075	rs1044499	A	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:43,13:0.23:56
chr3	88184192	rs200735088	C	CT	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=0.586;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	88188420	rs9813894	G	A	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	88189341	rs7653652	T	C	7181.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr3	88190768	rs7432826	C	A	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	88190809	rs7432838	C	T	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	88199179	rs6551277	T	C	7945.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	88199185	rs11374933	T	TC	8846.73	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:7,300:0.98:307
chr3	88199298	rs6551278	T	C	16213.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=25.45;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,637:1.00:637
chr3	89156830	rs111643515	C	T	9410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-1.303;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:306,455:0.60:761
chr3	89456555	rs3792572	T	A	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	89480265	rs12639506	A	G	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	89498619	rs1028011	A	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	89521509	rs73139110	C	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	89521602	rs112297761	T	TC	6984.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	89521693	rs35124509	T	C	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	89521725	rs1054750	T	C	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	89521820	.	TTG	T	369.74	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	89521824	rs371736339	CT	C	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	89521825	.	TTGACATGAAA	T	1522	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=0.9999;HP=1;HapScore=4;MGOF=36;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=1522;QD=527.425128722;SC=CTTTCTTGGCTTGACATGAAA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=89521849;WS=89521810;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	89521828	rs376317195	AC	A	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	89521831	rs369749467	TGAAAG	T	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	89521838	rs200459033	TTTG	T	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	89528461	rs12631313	A	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	89528477	rs12636710	G	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	90264768	rs6803112	A	G	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	90276703	.	A	G	717.77	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr3	93768268	rs33944211	C	G	2303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-1.417;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:73,112:0.61:185
chr3	93768420	.	G	GA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.160;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:65,15:0.19:80
chr3	93779860	rs17855824	C	T	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:208,142:0.41:350
chr3	94225786	rs1906643	G	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr3	96728829	.	GT	G	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.583;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr3	96962733	rs1392696	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr3	97194242	rs16838751	C	T	3659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.439;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:202,190:0.48:392
chr3	97194317	rs2305893	T	G	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:65,66:0.50:131
chr3	97194366	rs59354013	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr3	97194422	rs7624823	T	G	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	97198301	rs3217695	GA	G	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=10.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.885;SOR=1.679;set=HC	GT:AD:AF:DP	0/1:60,43:0.42:103
chr3	97331269	rs72932221	A	C	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-2.082;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,62:0.45:139
chr3	97331389	rs9841964	T	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	97364939	rs12488895	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-0.584;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr3	97365038	rs301948	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr3	97365074	rs301949	A	G	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=0.853;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:29,44:0.60:73
chr3	97367230	rs3214668	C	CA	4498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.841;QD=20.45;ReadPosRankSum=-2.741;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:90,130:0.59:220
chr3	97466432	rs79617067	T	G	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,53:0.60:89
chr3	97467361	rs138837886	ATCTC	A	4691.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:109,134:0.55:243
chr3	97499654	rs10935082	T	A	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	97541018	rs974572	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=0.481;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:22,37:0.63:59
chr3	97591153	rs17301717	C	T	3982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-1.691;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:414,230:0.36:644
chr3	97593380	rs2279898	G	A	6502.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:213,323:0.60:536
chr3	97593485	rs2279897	C	T	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:147,113:0.43:260
chr3	97605460	.	A	AT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.191;QD=0.46;ReadPosRankSum=-0.313;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:166,31:0.16:197
chr3	97605677	rs831902	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr3	97607290	rs13065340	G	A	2068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=0.430;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:186,118:0.39:304
chr3	97611916	rs1506441	A	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr3	97619250	rs5851085	C	CAACTA	600.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr3	97651884	rs4857298	A	C	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:90,89:0.50:179
chr3	97660084	rs11544446	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:129,71:0.35:200
chr3	97660106	rs4857302	A	C	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:67,127:0.65:194
chr3	97660198	rs832089	A	G	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	97664725	rs2172257	C	T	6505.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:293,324:0.53:617
chr3	97666317	.	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=2.528;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:351,56:0.14:407
chr3	97673268	rs832079	A	C	7232.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr3	97686019	rs41265444	G	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:98,108:0.52:206
chr3	97726747	rs832032	T	A	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.193;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	97727727	rs832030	G	C	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.477;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	97727753	rs832029	G	A	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr3	97731434	rs11426005	C	CA	1224.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	97753931	rs832070	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	97805954	rs13082722	T	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	97806616	rs4518168	G	A	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	97806999	rs6439602	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	98001777	rs72487753	G	C	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:93,76:0.45:169
chr3	98002419	rs16839214	A	G	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chr3	98002587	rs16839611	A	G	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:97,90:0.48:187
chr3	98073313	rs9822460	A	G	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:173,112:0.39:285
chr3	98110406	rs144759043	G	GA	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.952;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr3	98217154	rs58947289	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr3	98217178	rs55639376	T	A	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr3	98220243	rs73140298	C	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:66,75:0.53:141
chr3	98225441	rs1132750	A	C	267.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr3	98281349	rs9850648	G	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:141,81:0.36:222
chr3	98475083	rs893832	A	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	98489630	rs16840147	A	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,49:0.53:93
chr3	98490141	rs844160	A	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	98501080	rs3772100	C	T	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:139,132:0.49:271
chr3	98503683	rs704585	C	T	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	98503792	rs112115496	A	G	2458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-1.449;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:134,130:0.49:264
chr3	98507134	rs73136057	C	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr3	98512417	rs9862660	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr3	98512540	rs28489284	G	A	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=0.586;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:56,66:0.54:122
chr3	98518160	rs62821060	T	TA,TAA	1339.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.975;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.222;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.00;ReadPosRankSum=0.458;SOR=2.799;set=HC	GT:AD:AF:DP	1/2:4,35,28:0.52,0.42:67
chr3	98519481	rs1822017	G	A	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:112,105:0.48:217
chr3	98520339	rs72934641	G	A	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr3	98526864	rs28417568	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,38:0.45:85
chr3	98541012	rs866873	G	A	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	98541422	rs828617	G	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr3	98542194	rs6440159	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	98542485	rs142035943	G	GAAGAA	1760.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	98544304	rs73138004	T	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr3	98544353	rs828622	G	A	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	98600385	rs9838238	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr3	98619997	rs17852693	G	C	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-2.345;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:109,101:0.48:210
chr3	99536937	rs1718240	C	T	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:125,141:0.53:266
chr3	99860401	rs7629487	G	A	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:251,205:0.45:456
chr3	100015146	rs3772698	G	T	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:65,76:0.54:141
chr3	100015166	rs3772697	C	T	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr3	100015249	rs5851199	AT	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.80;ReadPosRankSum=-1.461;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr3	100016726	rs3832199	A	AT	559.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.537;QD=15.13;ReadPosRankSum=1.518;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:5,32:0.86:37
chr3	100029173	rs4928168	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr3	100030628	rs3217495	A	AT	1838.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:119,104:0.47:223
chr3	100034849	rs4928169	A	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr3	100053684	rs3830303	C	CG	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr3	100057846	rs1214381	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr3	100058102	rs166747	G	A	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr3	100060135	rs1228184	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr3	100067468	rs277649	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	100084432	rs277644	G	A	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:161,125:0.44:286
chr3	100086861	rs277640	T	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr3	100092526	rs11384494	A	AG	1827.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=0.811;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:60,49:0.45:109
chr3	100092527	.	G	GGTGC	1660	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=4;MGOF=1;MMLQ=27;MQ=60.0;NF=0;NR=21;PP=1660;QD=81.0952380952;SC=AATTCAACTAGTCCAGTTAAG;SbPval=1.0;Source=Platypus;TC=58;TCF=2;TCR=56;TR=21;WE=100092536;WS=100092517;set=Platypus	GT:AD:AF:DP	1/0:37,21:0.36:58
chr3	100092528	.	T	A	1636	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=4;MGOF=1;MMLQ=26;MQ=60.0;NF=7;NR=21;PP=1636;QD=59.6704004481;SC=ATTCAACTAGTCCAGTTAAGT;SbPval=0.77;Source=Platypus;TC=71;TCF=22;TCR=49;TR=28;WE=100092536;WS=100092517;set=Platypus	GT:AD:AF:DP	1/0:43,28:0.39:71
chr3	100092528	rs3832198	T	TGCA	1827.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.62;ReadPosRankSum=0.933;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:61,49:0.45:110
chr3	100119548	rs7645509	T	C	3618.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:253,190:0.43:443
chr3	100277476	rs7645690	G	C	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-0.414;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:55,47:0.46:102
chr3	100277514	rs7645700	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr3	100295733	rs7427360	A	G	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:194,151:0.44:345
chr3	100352043	rs610854	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr3	100354524	rs1144122	A	G	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:102,89:0.47:191
chr3	100354683	rs1520652	G	A	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:84,63:0.43:147
chr3	100354698	rs1718281	T	A	1605.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.12;ReadPosRankSum=2.423;SOR=0.440;set=HC	GT:AD:AF:DP	1/1:2,82:0.98:84
chr3	100365332	rs74779184	G	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr3	100368425	rs7622958	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	100368475	rs41272975	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr3	100368692	rs1144118	A	G	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	100374740	rs9866111	T	C	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:48,69:0.59:117
chr3	100432752	rs9824942	A	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.524;QD=5.58;ReadPosRankSum=-0.492;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr3	100438797	.	CT	C	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.329;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	100467018	rs11353	T	C	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:171,135:0.44:306
chr3	100473505	rs10936352	C	T	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:210,170:0.45:380
chr3	100493422	rs9846590	G	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:94,76:0.45:170
chr3	100494177	.	T	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=97.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=3.132;SOR=7.053;set=HC	GT:AD:AF:DP	0/1:43,33:0.43:76
chr3	100497098	rs9877951	C	T	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.034;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:148,65:0.31:213
chr3	100508189	rs35476532	A	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr3	100511379	rs989794	G	A	138.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	100511428	rs989793	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr3	100511446	rs989795	T	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr3	100529314	.	C	T	1897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.796;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:112,101:0.47:213
chr3	100539887	rs7615467	C	T	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:169,148:0.47:317
chr3	100543944	rs13069634	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=1.180;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr3	100551066	rs9845149	G	T	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=0.500;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:86,69:0.45:155
chr3	100558416	rs9841585	T	C	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:104,121:0.54:225
chr3	100558905	rs1354374	A	G	2065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=5.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-0.146;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:141,113:0.44:254
chr3	100560745	rs66923918	GA	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.161;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=0.792;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr3	100565031	rs6774830	G	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	100566555	rs3821728	G	C	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=2.256;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:56,38:0.40:94
chr3	100567592	rs6773877	T	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:89,42:0.32:131
chr3	100567799	rs6807452	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr3	100567811	rs6771476	A	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	100583651	rs10711419	GA	G	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-1.004;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr3	100585694	rs3732899	C	G	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.106;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:96,89:0.48:185
chr3	100594326	rs3839090	CGGCATA	C	6488.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	100605206	rs1987384	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	100617680	rs2245370	C	T	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr3	100621426	rs2576365	C	A	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	100945069	rs146849728	TTATATATATATATATATATATATATATATATATATATA	T	160.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.19;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	100946742	rs521661	T	G	1919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.393;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:101,98:0.49:199
chr3	100949842	rs348867	G	A	1789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=1.120;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:72,92:0.56:164
chr3	100963154	rs571391	G	A	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:130,115:0.47:245
chr3	100976755	rs7613046	G	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr3	100992385	rs348866	C	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=0.070;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr3	100994497	rs533852	C	T	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:115,89:0.44:204
chr3	101010214	rs184384923	G	A	2317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=1.405;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:131,124:0.49:255
chr3	101038339	rs546090	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr3	101039107	rs573908	A	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=2.216;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr3	101066717	rs2433031	T	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr3	101066992	rs2553421	A	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.10;ReadPosRankSum=1.242;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	101085683	rs58636547	TAAAAA	T	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr3	101177848	rs6809436	T	G	7050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=0.787;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:367,353:0.49:720
chr3	101212855	rs6791803	T	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr3	101232093	rs55749605	C	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-1.176;QD=12.94;ReadPosRankSum=-1.781;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr3	101283792	rs3762735	C	G	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:261,144:0.36:405
chr3	101299031	rs144008875	CAAT	C	270.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	101304414	rs3804776	G	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.900;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:19,23:0.55:42
chr3	101370529	rs56200814	TA	T	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.775;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.964;QD=2.99;ReadPosRankSum=-0.184;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:53,38:0.42:91
chr3	101370551	rs78127229	T	C	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:68,23:0.25:91
chr3	101373480	rs34508490	A	G	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr3	101389864	rs9837549	T	C	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	101404813	rs2303473	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr3	101443461	rs994573	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	101474385	rs2926543	A	T	4093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=1.676;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:223,209:0.48:432
chr3	101484335	rs2625282	G	A	6686.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	101504624	rs2625289	A	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	101520537	rs2305990	C	T	3471.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:154,174:0.53:328
chr3	101571550	rs587555	A	G	213.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	101572822	rs2925334	C	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	101573345	rs34931768	A	AT	989.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.752;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:97,79:0.45:176
chr3	101574503	rs677011	G	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	101575882	rs595788	T	C	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-1.710;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:35,85:0.71:120
chr3	101576029	rs3217713	T	TACTTTTAGAAAGCTTTAATAACC	17715.73	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=59.85;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr3	101576175	rs14134	T	C	11709.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.119;QD=26.08;ReadPosRankSum=-0.923;SOR=0.356;set=HC	GT:AD:AF:DP	1/1:1,448:1.00:449
chr3	105238890	rs11291806	CT	C	2678.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.374;QD=7.01;ReadPosRankSum=1.850;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:178,204:0.53:382
chr3	105252377	rs2171146	G	C	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-1.197;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:31,34:0.52:65
chr3	105253475	rs6437601	A	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:50,71:0.59:121
chr3	105258861	rs1044240	A	G	2870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=-0.886;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:197,155:0.44:352
chr3	105260520	rs1044243	C	T	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:213,190:0.47:403
chr3	105260596	rs599278	T	C	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	105264025	rs72989914	C	T	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:111,79:0.42:190
chr3	105266331	rs9855810	A	G	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.197;QD=7.43;ReadPosRankSum=0.261;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:104,74:0.42:178
chr3	105404031	rs16851440	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	105412286	rs10635036	C	CTT	1715.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.89;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	105420884	rs56063507	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr3	105421320	.	G	GAA	141.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.25;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	105422844	rs2305037	C	T	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	105438806	rs7624400	G	A	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	105452751	rs1992520	C	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	105453034	rs6768096	A	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	105455955	rs2289746	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	105468330	rs1443098	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	105495432	rs9809911	G	T	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	105586538	rs2221379	G	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	105588069	rs11711088	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	107447857	rs3761963	T	A	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:100,101:0.50:201
chr3	107451907	rs4855764	C	T	11316.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr3	107463456	rs3838316	TG	T	1358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=1.399;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:63,44:0.41:107
chr3	107491758	rs34531902	TAGA	T	616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.67;ReadPosRankSum=0.626;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr3	107510197	rs150873331	A	ATAAG	3122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.008;QD=16.97;ReadPosRankSum=-0.102;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:101,83:0.45:184
chr3	107519843	rs1532325	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	107524097	rs9842741	A	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	107524112	rs3840144	G	GT	623.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr3	107646728	rs4855779	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr3	107646807	rs9837335	G	T	4071.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:65,173:0.73:238
chr3	107646895	rs9861097	T	C	15850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=1095;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.158;QD=14.64;ReadPosRankSum=0.006;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:342,741:0.68:1083
chr3	107647001	rs35976982	CA	C	10930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DB;DP=1088;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.010;QD=11.04;ReadPosRankSum=1.394;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:306,684:0.69:990
chr3	107769230	rs696364	C	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.579;QD=3.15;ReadPosRankSum=2.535;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:143,46:0.24:189
chr3	107776511	rs709436	C	T	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	107809798	rs445541	C	T	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,98:0.98:100
chr3	107884211	rs327167	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	107884269	rs62264150	A	G	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:96,63:0.40:159
chr3	107885875	rs2305551	A	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.998;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr3	107910327	rs60290956	C	CTT	1407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.708;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:165,133:0.45:298
chr3	107925396	rs3213994	G	A	2679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=0.580;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:74,130:0.64:204
chr3	107932621	rs62267895	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.37;ReadPosRankSum=-0.963;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	107937286	rs1289760	A	G	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:85,52:0.38:137
chr3	107937360	rs56273515	C	T	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:163,103:0.39:266
chr3	107937408	rs1135897	C	T	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:115,77:0.40:192
chr3	108070556	rs9846218	T	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	108072243	rs6766283	C	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	108072298	rs6779254	T	C	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	108072704	rs6779650	T	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	108096098	rs1463426	C	G	10153.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr3	108096227	rs1463425	G	C	7609.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr3	108102586	rs34041576	T	TA	332.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.216;QD=10.74;ReadPosRankSum=0.727;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr3	108107704	rs1463431	C	T	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	108107925	rs7616341	C	A	10191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=0.474;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:276,483:0.64:759
chr3	108117694	rs13087507	G	A	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.288;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:37,51:0.58:88
chr3	108129348	rs1078455	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr3	108135606	rs56933265	TAA	T	3091.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:32,79:0.71:111
chr3	108135609	rs116262927	A	T	1226.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=1.074;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:38,77:0.67:115
chr3	108135799	rs11927603	C	G	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:110,135:0.55:245
chr3	108140148	rs4593038	A	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	108147295	rs1350235	C	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr3	108147543	rs61745179	C	A	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:263,129:0.33:392
chr3	108147728	rs3900940	T	C	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:65,128:0.66:193
chr3	108156633	rs113832514	A	AAAAG	1792.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=43.73;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	108158574	rs3996040	C	T	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	108172817	rs6437783	C	T	5949.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	108188755	rs11917965	A	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	108188993	rs9868484	G	A	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:126,184:0.59:310
chr3	108189710	rs34103044	A	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:151,96:0.39:247
chr3	108189750	rs12495639	C	T	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	108195406	rs3996003	C	T	7392.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:155,350:0.69:505
chr3	108211869	rs140450152	A	AAAGG	567.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=1.063;QD=12.90;ReadPosRankSum=0.310;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr3	108214537	rs2603140	T	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	108224685	.	CA	C	1012.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DP=455;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.422;QD=2.81;ReadPosRankSum=-0.736;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:223,138:0.38:361
chr3	108229171	rs2249886	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	108229437	rs150536264	G	GA	1203.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=0.765;SOR=0.547;set=HC	GT:AD:AF:DP	1/1:8,63:0.89:71
chr3	108271012	rs2305514	T	C	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	108273441	rs2045095	T	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	108286947	rs11386134	G	GA	652.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	108298260	rs2278911	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:84,47:0.36:131
chr3	108344636	rs5851600	TA	T	118	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr3	108355423	rs10711079	AT	A	886.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	108355575	rs10711080	CT	C	1186.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:24,89:0.79:113
chr3	108356501	rs143129590	T	TTTAAGGTAGTA	142.06	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.52;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	108393164	rs41267027	G	A	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr3	108403086	rs9856097	T	C	9435.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr3	108403198	rs12635729	T	C	2474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=0.018;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:242,145:0.37:387
chr3	108474507	rs1374821	T	C	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=0.185;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:52,38:0.42:90
chr3	108474567	rs75657243	G	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:204,97:0.32:301
chr3	108475808	rs1107337	G	A	2691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-0.167;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:65,126:0.66:191
chr3	108549720	rs2290055	T	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr3	108565815	rs2593831	T	C	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	108635099	rs9845098	T	C	2728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.569;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:341,169:0.33:510
chr3	108639263	rs13081500	T	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:81,59:0.42:140
chr3	108639270	rs6791441	C	T	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:56,82:0.59:138
chr3	108639384	rs6804162	T	C	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr3	108639423	rs2715687	C	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	108677821	rs2197737	C	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	108678002	rs2197738	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr3	108682218	rs2715755	A	G	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.834;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:308,121:0.28:429
chr3	108690221	rs2593943	G	A	15682.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:2,621:1.00:623
chr3	108698627	rs2953338	G	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	108703422	rs1868195	A	G	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	108703518	rs2593958	G	T	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.86;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	108703548	rs2593959	C	T	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	108703702	rs2593960	A	T	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	108705715	rs11433147	A	AT	572.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr3	108719470	rs3762698	C	G	7196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-1.276;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:181,343:0.65:524
chr3	108724202	rs13072610	A	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-1.180;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:65,27:0.29:92
chr3	108724279	rs2290058	T	A	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	108725694	rs2044586	C	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	108725759	rs2044587	C	T	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	108725848	rs5851630	ATTGC	A	17206.73	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr3	108725862	rs2044589	T	C	17699.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr3	108725984	rs2044590	G	C	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.88;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	108746836	rs17665933	T	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr3	108754146	rs9821261	G	A	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	108754214	rs3762697	T	C	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.655;QD=4.56;ReadPosRankSum=-1.600;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:219,96:0.30:315
chr3	108754238	rs4855576	A	T	6844.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=24.98;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	108754260	rs3762696	A	G	5736.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	108754320	rs11438791	T	TA,TAA	928.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;QD=23.81;SOR=1.819;set=HC	GT:AD:AF:DP	1/2:0,15,24:0.38,0.62:39
chr3	108754374	rs3762695	T	C	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	108773772	rs7653625	A	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	108776343	rs1031252	C	T	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	108780831	rs7653651	G	A	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,76:0.52:145
chr3	108781952	rs13060344	G	T	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.055;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:219,79:0.27:298
chr3	108788701	rs35996834	C	CT	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=3.725;QD=2.81;ReadPosRankSum=-1.811;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:67,15:0.18:82
chr3	108812154	rs9821382	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr3	108829765	rs6437822	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	108855774	rs1356071	A	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	108855801	rs1356072	T	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr3	109049384	rs13059848	T	C	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:104,128:0.55:232
chr3	109050980	rs1163438	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr3	109051009	rs6791602	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr3	109056178	.	TA	T	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.440;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:93,28:0.23:121
chr3	109178758	rs769533	C	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	110611137	rs1381838	G	A	8942.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr3	110791113	rs4682228	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	110792906	rs2399372	G	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	110793050	rs2399373	G	A	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	110796211	.	G	A	62.74	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	110796213	.	T	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	110796214	.	C	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	110830746	rs113902748	ATGTGTGTG	A,ATG	677.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.51;MQRankSum=-0.151;QD=27.11;SOR=0.340;set=HC	GT:AD:AF:DP	1/2:1,8,16:0.32,0.64:25
chr3	110866195	.	CT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.119;QD=0.13;ReadPosRankSum=1.356;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:270,59:0.18:329
chr3	110866437	rs62273799	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	111260975	rs2276873	C	T	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:79,127:0.62:206
chr3	111261242	rs3832264	G	GCTGCTGAAATTGATCACCA	1363.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr3	111263826	rs1513325	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	111356083	rs1533270	G	C	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr3	111432805	rs17423699	G	A	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:287,183:0.39:470
chr3	111451383	rs13085147	A	C	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:131,81:0.38:212
chr3	111451603	rs3821919	G	C	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr3	111637904	rs2399399	G	A	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:151,106:0.41:257
chr3	111638132	rs951660	A	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	111638952	rs6779756	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr3	111639353	rs937551	G	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=0.566;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	111658290	rs712509	T	G	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:25,69:0.73:94
chr3	111658486	rs712510	T	G	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	111659377	rs698358	T	C	8468.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr3	111664064	rs17426817	A	C	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-2.814;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:29,38:0.57:67
chr3	111677505	rs62277620	T	C	5065.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:212,145:0.41:357
chr3	111677526	rs11713044	G	A	5055.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:216,145:0.40:361
chr3	111685328	rs774859	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	111685348	rs774858	A	G	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	111685371	rs3217516	T	TGG	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.455;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-1.042;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr3	111686738	rs799570	G	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr3	111692693	rs2895388	A	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,53:0.43:124
chr3	111692829	rs774852	C	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	111697867	rs2289598	T	C	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:101,69:0.41:170
chr3	111705275	rs150902974	G	GTTTGT,GTTTGTTTTGT	3169.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=137;set=Intersection	GT:AF:DP	1/2:0.54,0.46:69
chr3	111709664	rs7637202	T	C	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.671;QD=3.39;ReadPosRankSum=-2.491;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr3	111710201	rs71773737	AT	A	976.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,49:0.60:82
chr3	111710206	rs6795538	T	C	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.821;QD=9.01;ReadPosRankSum=1.520;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chr3	111710398	rs17429033	A	G	7040.77	.	AC=1;AF=0.500;AN=2;DB;DP=1013;set=Intersection	GT:AD:AF:DP	0/1:597,413:0.41:1010
chr3	111710682	rs3749308	A	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.54;ReadPosRankSum=0.180;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr3	111719493	rs774764	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	111730546	rs3749310	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr3	111730591	rs3749311	G	T	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:56,93:0.62:149
chr3	111730766	rs3828394	G	A	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:70,101:0.59:171
chr3	111732608	rs8070	G	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr3	111757212	rs7625876	A	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	111760771	rs774774	A	G	12952.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr3	111763085	rs4682350	C	T	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	111763278	rs7650559	G	T	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	111765834	rs1561911	G	A	15280.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,598:1.00:598
chr3	111766124	rs9811691	G	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr3	111766215	rs1318554	A	G	14148.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr3	111766559	rs1688304	T	G	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	111799845	rs340151	A	T	3402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=1.135;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:297,195:0.40:492
chr3	111805438	rs3833596	G	GT	1796.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.250;QD=10.96;ReadPosRankSum=0.247;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:100,64:0.39:164
chr3	111828384	rs5851818	G	GT	13464.73	.	AC=2;AF=1.00;AN=2;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.02;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr3	111828423	rs340167	G	A	11111.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr3	111828476	rs2120095	A	G	7361.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.04;ReadPosRankSum=-1.374;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:2,292:0.99:294
chr3	111832120	rs340165	A	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	111849497	rs78709683	T	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr3	111873902	rs11369523	T	TA	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=2.966;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:46,44:0.49:90
chr3	111885896	rs4682084	A	G	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	111898387	rs74367861	A	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr3	111918216	rs13098660	A	G	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.932;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:89,65:0.42:154
chr3	111921225	rs6781844	G	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr3	111923123	rs4434123	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr3	111926909	rs1492491	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=0.700;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr3	111926950	rs17505536	G	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-0.196;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr3	111936118	rs11921877	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-1.335;QD=6.62;ReadPosRankSum=-2.722;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	111936200	rs1388857	C	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr3	111936207	rs6779306	T	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr3	111950367	rs55735606	C	G	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	111983157	rs62276974	G	A	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=3.257;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:27,56:0.67:83
chr3	111984970	rs4682098	T	C	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	111996726	rs6791182	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr3	112005423	rs7621431	T	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.302;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr3	112005691	rs79950192	C	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.267;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr3	112052173	rs9883527	T	C	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	112059768	rs1131199	C	G	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:79,108:0.58:187
chr3	112063850	rs2272022	C	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:128,60:0.32:188
chr3	112066360	rs7612748	C	T	3643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=1.662;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:144,177:0.55:321
chr3	112184927	rs2171513	A	G	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr3	112185025	rs9288952	G	A	16310.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,630:1.00:630
chr3	112188476	rs71631392	A	AG	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	112188478	.	A	ACATAGAATATGTATATAC	98.25	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.12;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	112190137	rs2931761	G	T	9128.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr3	112218319	.	TAAA	T	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.61;ReadPosRankSum=-0.357;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr3	112253058	rs35560667	C	CA	3086.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=8.39;ReadPosRankSum=0.361;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:170,198:0.54:368
chr3	112253193	rs11381118	C	CA	2320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.022;QD=6.22;ReadPosRankSum=2.094;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:200,173:0.46:373
chr3	112255507	rs71317507	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr3	112260571	rs3736269	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-0.898;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:29,24:0.45:53
chr3	112262859	rs3736270	A	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr3	112262957	rs3736271	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr3	112267345	rs34186576	TA	T	3594.73	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:146,145:0.50:291
chr3	112267523	rs9809247	G	A	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:125,125:0.50:250
chr3	112280218	rs2279532	G	A	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:76,85:0.53:161
chr3	112289320	rs9869455	G	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr3	112289372	rs9869579	G	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr3	112289505	rs35692417	C	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=3.459;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:60,55:0.48:115
chr3	112300191	rs34596334	T	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr3	112301458	rs5851844	C	CCTTAGTAAT	1374.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	112329033	.	G	GA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.480;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:131,29:0.18:160
chr3	112338027	rs13084615	T	C	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	112415652	rs10934180	G	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=26.46;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	112546306	rs4682119	C	A	4632.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:270,247:0.48:517
chr3	112556904	rs6795521	C	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.14;ReadPosRankSum=0.900;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	112560104	rs73225776	C	T	3591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.073;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:250,197:0.44:447
chr3	112564663	rs4682438	G	C	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.864;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=0.788;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:34,31:0.48:65
chr3	112564663	.	GTC	CTT	686	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=6;NR=14;PP=686;QD=36.9733937431;SC=GTTTCTCTTGGTCACTTTTGC;SbPval=0.46;Source=Platypus;TC=30;TCF=8;TCR=22;TR=20;WE=112564673;WS=112564653;set=Platypus	GT:AD:AF:DP	1/0:10,20:0.67:30
chr3	112564665	rs4682439	C	T	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=0.671;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:32,31:0.49:63
chr3	112642568	rs9865242	C	G	2244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=2.108;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:122,120:0.50:242
chr3	112647613	rs1466872	T	C	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr3	112647832	rs9826308	A	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:98,90:0.48:188
chr3	112647988	rs9868053	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr3	112648125	rs6438117	G	T	11054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.065;QD=18.55;ReadPosRankSum=0.901;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:307,289:0.48:596
chr3	112648127	rs4596117	T	G	11054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.048;QD=18.71;ReadPosRankSum=0.654;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:302,289:0.49:591
chr3	112648222	rs2171509	T	C	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:90,73:0.45:163
chr3	112666615	rs72952145	A	G	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:74,77:0.51:151
chr3	112719791	rs200301737	CA	C	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-0.402;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,57:0.71:80
chr3	112732309	rs5851869	GT	G	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.693;QD=10.67;ReadPosRankSum=0.625;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,21:0.84:25
chr3	112935138	rs4682130	C	G	9934.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr3	112990245	rs35902417	C	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr3	112996801	rs77783422	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr3	113010303	rs17321330	G	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr3	113010466	rs2291905	T	C	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	113012797	rs810209	G	A	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	113012974	rs775217	A	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	113013848	rs11398178	A	AT	782.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	113015436	rs808949	G	C	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	113015553	rs808950	A	C	15701.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:5,624:0.99:629
chr3	113015660	rs2270781	G	A	4897.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:265,251:0.49:516
chr3	113022870	rs4682484	T	C	7538.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	113022996	rs2270782	G	A	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	113027214	rs775231	A	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	113085143	rs74521061	T	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-2.128;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:32,31:0.49:63
chr3	113092197	rs1463640	A	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,7:0.17:41
chr3	113119301	rs7647220	C	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr3	113125966	rs73237123	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr3	113128051	rs13059888	G	T	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:196,173:0.47:369
chr3	113135345	rs12635786	A	C	1470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=2.261;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:55,74:0.57:129
chr3	113135543	rs12630518	G	A	129.41	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr3	113145006	rs73239107	C	T	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:134,136:0.50:270
chr3	113146130	rs59722850	T	C	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.418;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:85,73:0.46:158
chr3	113152596	rs2291413	T	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr3	113164109	rs2054823	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr3	113169372	.	GA	G	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.471;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:113,36:0.24:149
chr3	113207758	rs7625841	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:79,48:0.38:127
chr3	113211953	rs3732804	C	T	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	113233563	rs2306069	C	T	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:81,72:0.47:153
chr3	113285423	rs2271495	T	C	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:135,93:0.41:228
chr3	113286405	rs2292511	C	T	2416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.519;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:156,127:0.45:283
chr3	113300183	rs2271494	A	T	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:89,100:0.53:189
chr3	113300351	rs9863703	T	G	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:68,74:0.52:142
chr3	113300390	rs62265520	T	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-0.937;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:30,44:0.59:74
chr3	113302118	rs62265521	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.25;ReadPosRankSum=-1.734;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	113302425	rs2271493	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr3	113304171	rs41271363	G	A	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:118,106:0.47:224
chr3	113313947	rs2614193	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr3	113320312	rs9829719	A	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr3	113323793	rs3732796	C	T	4331.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:283,232:0.45:515
chr3	113331289	rs9842516	T	G	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:117,72:0.38:189
chr3	113373930	rs930818	A	G	8731.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr3	113376110	rs10606566	TTGC	T	7827.73	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:12,328:0.96:340
chr3	113376145	.	GCTT	G	2086	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=1;MGOF=15;MMLQ=27;MQ=59.74;NF=9;NR=105;PP=2086;QD=18.3421052632;SC=TGCTGCTGCTGCTTTATGTAG;SbPval=0.97;Source=Platypus;TC=142;TCF=22;TCR=120;TR=114;WE=113376155;WS=113376135;set=Platypus	GT:AD:AF:DP	0/1:28,114:0.80:142
chr3	113377505	rs16861271	T	G	3225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-1.037;QD=10.44;ReadPosRankSum=-0.873;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:148,161:0.52:309
chr3	113499458	rs1430944	G	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	113557787	rs66781755	AGCC	A	10454.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:2,403:1.00:405
chr3	113595156	rs2712350	C	G	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	113609536	rs116661171	C	T	5103.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:325,269:0.45:594
chr3	113619872	rs2632244	C	T	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	113631865	rs16861409	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr3	113649842	rs28736460	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr3	113655207	rs3765114	C	T	2998.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:196,160:0.45:356
chr3	113656833	rs1963015	C	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr3	113656852	rs5851908	C	CA	366.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=6.576;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.711;QD=6.54;ReadPosRankSum=-0.959;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:21,35:0.62:56
chr3	113664322	rs146296310	C	G	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-1.771;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:170,151:0.47:321
chr3	113673125	rs11921691	A	G	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:218,195:0.47:413
chr3	113676458	rs78448204	T	G	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr3	113679725	rs3732785	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr3	113720624	rs6438178	C	T	5324.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	113750396	.	A	C	731.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr3	113784007	rs34428541	A	AT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.498;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	113795834	rs7631864	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr3	113801826	rs13086657	C	T	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=2.108;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:31,32:0.51:63
chr3	113801965	rs13071100	T	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-1.270;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr3	113858350	rs2251177	C	T	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	113890815	rs6280	C	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:70,66:0.49:136
chr3	113955055	rs11316836	GA	G	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-1.079;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:75,50:0.40:125
chr3	113955164	rs3732782	T	G	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:117,111:0.49:228
chr3	113955187	rs3732781	A	C	3216.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:106,88:0.45:194
chr3	113955265	rs6438190	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:55,56:0.50:111
chr3	113955320	rs6438191	C	T	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:59,82:0.58:141
chr3	114014301	rs77967063	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr3	114027065	.	CGT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=1.714;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr3	114832354	rs6787503	G	C	2581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=0.093;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:163,134:0.45:297
chr3	116163634	rs138580275	GAC	G	952.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=61.87;MQRankSum=-4.150;QD=5.92;ReadPosRankSum=-2.129;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:113,48:0.30:161
chr3	116163653	.	AC	A	1150.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=2.812;MLEAC=1;MLEAF=0.500;MQ=61.57;MQRankSum=5.067;QD=6.39;ReadPosRankSum=4.236;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:112,68:0.38:180
chr3	116163655	.	ACAAACACACAC	A	954.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=3.014;MLEAC=1;MLEAF=0.500;MQ=61.57;MQRankSum=4.181;QD=4.59;ReadPosRankSum=3.914;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:146,62:0.30:208
chr3	116728295	rs11381408	G	GA	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.417;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr3	118269774	rs9816586	A	G	2083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.005;QD=9.60;ReadPosRankSum=1.711;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:108,109:0.50:217
chr3	118269825	rs57227846	GT	G	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.800;QD=7.34;ReadPosRankSum=-0.770;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr3	118381320	rs28380350	C	A	4275.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:216,218:0.50:434
chr3	118649060	rs2903250	G	T	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	118865332	rs11550908	A	G	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	118865609	rs10934483	C	T	8228.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr3	118866515	rs9864127	C	T	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	118867047	rs9289122	C	G	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	118870025	rs11373158	A	AC	11635.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr3	118870244	.	A	G	206.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr3	118909159	rs9840317	A	G	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	118909962	rs3796356	T	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	118909987	rs3796357	C	T	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	118912961	rs62263545	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr3	118913054	rs4284973	A	G	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:150,166:0.53:316
chr3	118913337	rs7628485	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr3	118922654	rs12186112	A	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	118930791	rs5868	G	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr3	118930827	rs12493956	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr3	118930884	rs6774	G	A	3907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.589;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:200,203:0.50:403
chr3	118931113	rs4568125	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr3	118931389	rs6784208	C	T	4734.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:298,249:0.46:547
chr3	118935284	rs68075325	CACGCACAT	C	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	118945796	rs3764779	G	C	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:124,143:0.54:267
chr3	119013714	rs72960626	C	A	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr3	119013928	rs3732412	A	T	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	119084331	rs17203055	A	G	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:148,148:0.50:296
chr3	119118104	rs4688001	A	G	5988.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	119128628	rs1463139	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.48;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	119128628	.	AGTGCAT	GGTGCAC,GGTGCAT	125	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=4;MMLQ=26;MQ=60.0;NF=1,1;NR=4,12;PP=17,125;QD=14.0935749724;SC=GAGATGGTAAAGTGCATTCTC;SbPval=0.33;Source=Platypus;TC=13;TCF=1;TCR=12;TR=5,13;WE=119128642;WS=119128618;set=Platypus	GT:AF:DP	0/1:0.38:13
chr3	119128634	rs1463138	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.06;ReadPosRankSum=-0.319;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	119133183	rs3732413	G	A	10329.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:2,390:0.99:392
chr3	119133554	rs61740281	G	A	5300.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:271,272:0.50:543
chr3	119171280	rs1919586	C	G	10546.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr3	119188213	rs75416321	G	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr3	119188895	rs6438531	C	G	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	119196334	rs3732419	G	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr3	119197285	rs4688005	A	G	10036.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr3	119198873	rs4688007	G	A	12223.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr3	119199099	.	C	CTT	85	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=13;HapScore=3;MGOF=30;MMLQ=21;MQ=58.52;NF=2;NR=7;PP=85;QD=10.0;SC=CAATTATTTACTTTTTTTTTT;SbPval=0.24;Source=Platypus;TC=19;TCF=2;TCR=17;TR=9;WE=119199107;WS=119199089;set=Platypus	GT:AD:AF:DP	0/1:10,9:0.47:19
chr3	119204063	rs11382133	C	CA,CAA	151.37	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=21;set=Intersection	GT:AF:DP	0/1:0.75:16
chr3	119211384	rs11556604	T	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:63,44:0.41:107
chr3	119222585	.	CT	C	36	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5040;HP=13;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=2;NR=2;PP=36;QD=10.25;SC=TTAATAATGCCTTTTTTTTTT;SbPval=0.68;Source=Platypus;TC=6;TCF=3;TCR=3;TR=4;WE=119222593;WS=119222575;set=Platypus	GT:AD:AF:DP	1/0:2,4:0.67:6
chr3	119235977	rs4447803	C	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr3	119236017	rs4461452	G	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr3	119246477	rs77922702	T	C	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr3	119263770	rs9282638	T	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:59,72:0.55:131
chr3	119276377	rs66604554	A	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:37,56:0.60:93
chr3	119301139	rs20568	C	T	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:118,159:0.57:277
chr3	119305379	rs25676	T	A	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:220,205:0.48:425
chr3	119325907	rs2251566	G	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-2.207;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr3	119327604	rs5852212	GC	G	1755.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,69:0.49:141
chr3	119327653	rs1723969	T	C	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:189,189:0.50:378
chr3	119328449	rs3832185	CAGGCTTT	C	3145.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:73,81:0.53:154
chr3	119331874	rs2272270	C	T	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:164,144:0.47:308
chr3	119331892	rs2272269	C	G	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:152,147:0.49:299
chr3	119332042	rs2272268	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr3	119334986	rs2247660	G	A	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr3	119336728	rs4688020	C	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	119338265	rs76752760	C	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr3	119338956	rs2280669	A	G	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	119339010	rs1877595	G	A	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	119339054	rs1877594	C	T	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	119339063	rs144464347	TCC	T	696.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,21:0.30:69
chr3	119348345	rs3054091	A	ATT,ATTTT	4362.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=2.286;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.380;QD=19.30;ReadPosRankSum=2.117;SOR=0.459;set=HC	GT:AD:AF:DP	1/2:24,110,92:0.49,0.41:226
chr3	119361250	rs8007	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	119361415	rs1985724	A	G	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.287;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:64,59:0.48:123
chr3	119362318	rs67683909	A	G	1389.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	119362369	rs6783324	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	119367390	rs2688643	T	C	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	119378872	rs1880040	G	A	14154.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,549:1.00:549
chr3	119379186	rs4688023	C	T	14760.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,574:1.00:574
chr3	119379352	rs4688024	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	119395799	rs2280578	A	C	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=25.90;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	119395870	.	CGGG	C	1356.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.669;QD=21.88;ReadPosRankSum=1.413;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:26,36:0.58:62
chr3	119395873	.	G	GGC	748.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.170;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.627;QD=11.88;ReadPosRankSum=-1.495;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr3	119395918	.	AAGAGGGCAGAGGGCAGAAGGC	A	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.101;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=3.436;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-0.797;QD=3.17;ReadPosRankSum=0.253;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:101,19:0.16:120
chr3	119421911	rs7624404	T	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	119421934	rs7634701	A	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	119421963	rs7612861	C	T	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	119422106	rs7612954	C	A	8090.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:1,318:1.00:319
chr3	119422204	rs7624672	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	119428529	rs6786722	C	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	119434527	rs6438544	G	C	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	119459639	rs34948068	A	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=0.238;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr3	119501580	rs3841391	G	GC	2057.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.18;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	119501780	rs2472668	G	A	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	119501798	rs2461831	T	A	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	119529113	rs3732356	G	T	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	119533733	rs6785049	G	A	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	119533773	rs6797879	T	C	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	119533910	rs4058490	T	C	13569.73	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr3	119886548	rs9858566	G	C	12532.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr3	119886776	rs902790	T	A	8681.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr3	119892121	rs13064815	C	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr3	119900212	rs1488765	G	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr3	119900260	rs1488764	T	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	119904125	rs902791	A	G	11024.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr3	119904315	rs902792	G	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	119905641	rs2319542	G	A	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr3	119911667	rs2319543	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	119912297	rs902793	C	A	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,62:0.44:141
chr3	120123953	rs1147701	T	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr3	120130899	rs1259326	T	C	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-1.335;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:63,27:0.30:90
chr3	120169641	rs1147708	T	C	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.743;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	120369575	rs3817627	T	G	3854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.280;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:211,197:0.48:408
chr3	120371369	rs1054095	G	A	1627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.037;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:96,86:0.47:182
chr3	120371414	rs2551607	G	A	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	120389243	rs1800722	T	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:64,69:0.52:133
chr3	120389316	rs2255543	T	A	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr3	120409526	rs2288096	C	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	120413158	rs7612975	G	A	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	120500093	rs3732401	C	T	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:173,144:0.45:317
chr3	120673673	rs142292885	CT	C	205.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr3	120833993	rs16832111	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr3	120924764	rs74730846	C	T	87.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.97;ReadPosRankSum=-0.921;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	121043357	rs76958336	C	A	4103.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:336,231:0.41:567
chr3	121100116	rs35624942	GT	G	1239.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	121137976	rs6782025	C	T	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	121138015	rs6782033	C	T	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	121151812	rs3218634	G	C	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:116,115:0.50:231
chr3	121154974	rs1381057	T	C	3226.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:162,162:0.50:324
chr3	121155198	rs2030531	C	T	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.554;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:68,59:0.46:127
chr3	121186422	rs532411	G	A	4234.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:245,221:0.47:466
chr3	121186451	rs532326	T	C	4192.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:220,216:0.50:436
chr3	121186543	rs1381058	A	G	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:60,47:0.44:107
chr3	121195302	rs10591564	TACAC	T,TACACAC	3163.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=6.096;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.574;QD=26.36;ReadPosRankSum=1.788;SOR=1.927;set=HC	GT:AD:AF:DP	1/2:10,69,41:0.57,0.34:120
chr3	121208833	rs3218649	G	C	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=1.273;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:131,100:0.43:231
chr3	121212277	rs11351457	AT	A	830.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.768;QD=9.03;ReadPosRankSum=2.199;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:36,56:0.61:92
chr3	121212455	.	G	A	3074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-1.078;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:161,159:0.50:320
chr3	121228833	rs3732406	A	C	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:39,55:0.59:94
chr3	121228960	rs487848	G	A	5139.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:337,271:0.45:608
chr3	121238749	rs702018	G	A	9373.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr3	121241058	rs13059229	C	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr3	121263720	rs702017	C	A	9401.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr3	121265176	rs3806614	G	A	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=1.604;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr3	121265522	rs11714774	A	C	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.897;QD=8.67;ReadPosRankSum=0.120;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:102,84:0.45:186
chr3	121305576	.	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.83;ReadPosRankSum=-2.458;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	121339354	rs7640859	T	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr3	121350583	rs1128159	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.68;ReadPosRankSum=0.484;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr3	121350593	rs1128158	C	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=-0.807;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	121350616	rs1128154	G	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr3	121350966	rs9869984	C	G	10102.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr3	121351315	rs150627065	G	GGGCTCAGGCTCA	7747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=1054;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=7.574;QD=9.05;ReadPosRankSum=3.748;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:455,401:0.47:856
chr3	121351480	rs9815500	T	C	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	121352068	rs150795147	C	CT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=1.487;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr3	121353254	rs2070179	T	C	10357.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr3	121353328	rs6770842	A	C	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr3	121354381	rs7620842	A	T	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	121354583	rs3772126	G	A	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:145,129:0.47:274
chr3	121361646	rs12487377	G	A	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.902;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:57,73:0.56:130
chr3	121361787	rs2070178	G	A	1495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-0.265;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:91,78:0.46:169
chr3	121366123	rs9818402	C	T	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:130,131:0.50:261
chr3	121366377	rs7356043	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr3	121383297	rs7153	G	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr3	121387060	rs56109033	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr3	121388362	rs11363204	AT	A	177.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	121396049	rs3835145	T	TA	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=2.584;QD=9.16;ReadPosRankSum=0.288;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr3	121396060	rs78322216	C	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=6.038;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=2.300;QD=9.39;ReadPosRankSum=0.764;SOR=1.733;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr3	121400725	rs1463736	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr3	121410604	.	G	A	2813.77	.	AC=1;AF=0.500;AN=2;DP=408;set=Intersection	GT:AD:AF:DP	0/1:237,162:0.41:399
chr3	121412892	rs11915822	A	G	5465.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:311,279:0.47:590
chr3	121414061	rs1127412	C	T	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:121,80:0.40:201
chr3	121414217	rs35674179	C	A	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:150,157:0.51:307
chr3	121415720	rs3732410	T	C	6176.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:372,328:0.47:700
chr3	121416623	rs3732407	G	C	3275.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:165,167:0.50:332
chr3	121418765	rs11927625	T	C	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:67,78:0.54:145
chr3	121433926	rs9854052	T	A	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	121435621	rs9832267	T	C	12677.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr3	121435624	rs9812411	C	T	12785.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr3	121437097	rs56286202	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	121447911	rs1919554	A	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr3	121449612	rs7643293	G	T	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-0.773;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:55,60:0.52:115
chr3	121500479	.	T	TACAC	399.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr3	121500509	rs201126629	C	A	188.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=2.050;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr3	121500510	rs201718940	A	T	665.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=1.965;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr3	121507415	rs4073474	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr3	121508830	rs6802815	A	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr3	121514458	rs141330650	TA	T	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=1.569;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr3	121526099	rs4582090	A	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.25;ReadPosRankSum=-1.180;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	121526204	rs4543051	G	A	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-0.791;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr3	121527903	rs35072741	C	CT	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.307;QD=8.05;ReadPosRankSum=0.734;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr3	121563271	rs11717089	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr3	121563494	rs77198814	G	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	121573455	rs12629720	C	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	121573729	rs9834185	T	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	121613205	rs4603998	G	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr3	121631841	rs1523519	G	A	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:141,138:0.49:279
chr3	121643163	rs2293611	G	C	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:65,68:0.51:133
chr3	121659197	rs3817599	G	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr3	121720514	.	G	GT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.667;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.346;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr3	121724038	rs3942629	G	A	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:128,106:0.45:234
chr3	121810427	rs57304749	CT	C	6529.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.636;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=2.979;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.230;QD=20.93;ReadPosRankSum=2.112;SOR=0.151;set=HC	GT:AD:AF:DP	1/1:2,310:0.99:312
chr3	121825197	rs2681417	G	A	4454.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:196,220:0.53:416
chr3	121836966	rs10580127	TGA	T	7889.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:2,196:0.99:198
chr3	121838319	rs1129055	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr3	121976253	rs9869985	G	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	122000871	rs4678174	C	T	4894.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr3	122003045	rs2036400	G	C	28620.77	.	AC=2;AF=1.00;AN=2;DB;DP=1126;set=Intersection	GT:AD:AF:DP	1/1:0,1106:1.00:1106
chr3	122003757	rs1801725	G	T	11514.77	.	AC=1;AF=0.500;AN=2;DB;DP=1104;set=Intersection	GT:AD:AF:DP	0/1:541,556:0.51:1097
chr3	122003832	rs1801726	G	C	19020.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:0,712:1.00:712
chr3	122004098	rs4677948	A	T	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	122056432	rs17589	C	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr3	122060404	rs34173813	C	T	2764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.718;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:186,151:0.45:337
chr3	122078677	.	TAAAAAAAAAAA	T,TA	1242.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;QD=38.84;SOR=1.284;set=HC	GT:AD:AF:DP	1/2:0,21,11:0.66,0.34:32
chr3	122081659	rs9857709	AA	GC	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	122103188	.	C	G	3041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=-0.278;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:131,156:0.54:287
chr3	122121563	rs3838601	T	TTTTC	412.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	122128466	rs4306808	G	C	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:44,64:0.59:108
chr3	122128519	rs10511410	G	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:125,148:0.54:273
chr3	122133830	rs3749213	T	G	6174.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:297,317:0.52:614
chr3	122145810	rs4677950	T	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	122168341	rs3749209	C	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr3	122186141	rs75578364	A	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:119,72:0.38:191
chr3	122186188	rs4678193	C	T	7213.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	122215166	rs10625209	A	AAC,AACACACAC	508.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/1:0.94:16
chr3	122247606	rs7628052	A	G	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr3	122259606	rs9851180	T	C	4562.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:263,233:0.47:496
chr3	122259738	rs145948621	G	GT	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.705;MLEAC=1;MLEAF=0.500;MQ=61.32;MQRankSum=10.711;QD=1.94;ReadPosRankSum=0.686;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:111,55:0.33:166
chr3	122259745	rs9831600	G	T	2439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.991;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=61.27;MQRankSum=5.477;QD=14.10;ReadPosRankSum=-2.502;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:90,83:0.48:173
chr3	122259782	rs9868934	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,32:0.32:100
chr3	122274757	rs73192127	G	C	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:257,155:0.38:412
chr3	122285005	rs12485294	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr3	122288210	rs2332285	G	A	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:139,161:0.54:300
chr3	122290579	rs2036342	C	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:107,69:0.39:176
chr3	122296647	rs7632426	G	A	3440.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:167,173:0.51:340
chr3	122334243	rs6778786	C	T	4682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.796;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:319,252:0.44:571
chr3	122354037	rs1106346	A	G	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:217,161:0.43:378
chr3	122354052	rs1106345	A	G	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:152,123:0.45:275
chr3	122354792	rs12489170	G	A	5348.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:364,280:0.43:644
chr3	122437321	rs7645033	T	C	14094.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.95;ReadPosRankSum=-0.742;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:2,563:1.00:565
chr3	122437834	rs3821688	A	G	9199.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr3	122471407	rs72280610	TA	T	990.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.286;QD=7.86;ReadPosRankSum=0.881;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:35,91:0.72:126
chr3	122474305	rs6794019	C	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	122477743	rs11369405	C	CA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.575;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.103;QD=2.42;ReadPosRankSum=0.434;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr3	122477795	rs2137210	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=26.51;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	122478032	rs10657578	C	CCACA,CCA	839.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/1:1.00:17
chr3	122512631	rs3806643	G	A	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	122513964	rs891406	A	C	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	122514464	rs143669753	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr3	122605544	rs9864868	G	A	5254.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	122629589	rs7622250	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.64;QD=24.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	122630323	rs2303982	T	G	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr3	122630346	rs2303983	T	C	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	122631896	rs2276782	A	T	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	122642401	rs2276780	G	A	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	122642415	rs2276779	G	C	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	122642590	rs2276778	G	A	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	122658417	rs3732827	G	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr3	122694820	rs895076	A	T	6123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=1.148;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:228,303:0.57:531
chr3	122807995	rs836860	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr3	122811042	rs836863	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	122821108	rs2717233	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	122821385	rs2241961	T	C	5419.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.52;ReadPosRankSum=-1.073;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:2,219:0.99:221
chr3	122821459	.	T	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.232;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr3	122821478	rs2241962	T	A	428.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.44;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	122821671	rs2241963	A	G	9569.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr3	122821672	rs61182591	T	A	9569.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr3	122834887	rs836839	A	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	122835210	rs836840	A	G	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	122835232	rs2278668	T	C	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	122843110	rs861375	G	T	14946.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,576:1.00:576
chr3	122843212	rs2305051	C	T	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	122864436	rs8739	G	A	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	122864587	rs3215241	TAGAC	T	1943.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	122865136	rs2673345	T	A	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	122880191	rs8935	T	C	4614.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.712;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=1.154;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:1,180:0.99:181
chr3	123008519	rs4677881	T	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	123010276	rs9809236	G	A	7941.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:246,368:0.60:614
chr3	123014877	rs9881951	C	T	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	123015094	rs9882534	G	C	10863.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr3	123018963	rs4482616	A	G	7380.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr3	123021838	rs9877581	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	123021870	rs9844212	G	C	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,44:0.42:104
chr3	123022740	.	G	GAAGAA	1013.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.33;MQRankSum=1.858;QD=32.70;ReadPosRankSum=1.413;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr3	123037047	rs4327330	A	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	123047478	rs9855635	A	G	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:154,128:0.45:282
chr3	123047666	rs9855969	A	G	8309.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	123049707	rs9829332	G	T	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,60:0.51:118
chr3	123049938	rs6806529	A	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr3	123066555	rs112525497	A	AAAGG	9981.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	123086698	.	G	GA	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.202;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:395,85:0.18:480
chr3	123167042	rs372095163	C	T	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-1.637;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr3	123167249	rs4678027	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	123301242	rs820469	C	G	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:116,116:0.50:232
chr3	123303821	rs1271004	G	C	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:140,156:0.53:296
chr3	123303960	rs820468	C	A	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=-0.634;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:45,36:0.44:81
chr3	123337414	rs860224	C	G	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr3	123338956	rs820457	T	A	1395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.395;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.002;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:155,96:0.38:251
chr3	123366170	.	C	T	2588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.546;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-0.326;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:150,134:0.47:284
chr3	123378534	rs39639	C	G	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	123411589	rs40305	G	A	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:102,133:0.57:235
chr3	123418913	rs865358	G	A	19990.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.721;ClippingRankSum=0.000;DB;DP=803;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=-0.171;QD=25.60;ReadPosRankSum=1.261;SOR=0.256;set=HC	GT:AD:AF:DP	1/1:1,780:1.00:781
chr3	123426984	rs7641248	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr3	123440967	rs820355	G	A	18970.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.40;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,747:1.00:747
chr3	123451773	rs9833275	G	C	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	123456432	rs2168439	C	T	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	123457711	rs2198766	C	A	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	123457893	rs9840993	G	A	13856.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:1,544:1.00:545
chr3	123633612	rs11551801	G	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	123634046	rs2700373	G	A	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr3	123650432	rs2271969	A	G	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	123652476	rs6784695	G	A	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	123665902	rs17310144	T	G	4763.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:175,223:0.56:398
chr3	123666192	rs17375977	C	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr3	123674879	.	T	TA	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.897;QD=1.87;ReadPosRankSum=-1.858;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:115,41:0.26:156
chr3	123688760	rs34337446	C	G	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:97,86:0.47:183
chr3	123801295	rs58715131	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr3	123851972	rs7627646	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	124044949	rs2289778	C	T	17034.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr3	124066121	rs67454662	CTGTGTGTG	C	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-1.291;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	124113929	rs482285	A	T	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:55,68:0.55:123
chr3	124114068	rs9841322	G	A	3560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.011;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:191,185:0.49:376
chr3	124128938	rs647010	A	G	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	124132263	rs2289846	A	T	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	124195987	rs572145	T	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	124210344	rs10755077	C	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:67,63:0.48:130
chr3	124303786	rs2250757	G	C	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:195,155:0.44:350
chr3	124351316	rs1708303	G	A	5685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.070;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:331,294:0.47:625
chr3	124351424	rs1660038	T	C	4776.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:257,238:0.48:495
chr3	124352573	rs652046	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr3	124369640	rs11372663	T	TA	3901.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:96,102:0.52:198
chr3	124369650	rs2291988	T	C	3763.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:93,97:0.51:190
chr3	124374405	rs4677939	A	C	2789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-0.802;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:121,138:0.53:259
chr3	124376653	rs106520	G	A	5317.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:266,274:0.51:540
chr3	124377196	rs10804562	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr3	124378386	rs333297	C	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr3	124378412	rs10755078	A	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr3	124379748	rs333290	G	C	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:325,203:0.38:528
chr3	124379817	rs333289	T	C	4409.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:334,243:0.42:577
chr3	124393595	rs333355	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	124393610	rs333354	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	124396338	rs333349	T	G	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr3	124397249	rs35286809	AT	A	427.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.657;QD=8.07;ReadPosRankSum=-0.448;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:19,34:0.64:53
chr3	124398571	rs821365	A	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr3	124398589	rs821364	A	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	124412524	rs2289428	T	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,66:0.57:116
chr3	124412634	rs333283	G	T	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.577;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:47,48:0.51:95
chr3	124416698	rs333277	A	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.78;ReadPosRankSum=0.821;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	124449252	rs2279199	T	C	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr3	124449291	rs1139538	A	G	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	124450258	rs4678146	T	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	124450321	rs10934681	T	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:60,40:0.40:100
chr3	124451284	rs16835925	T	C	2878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.491;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:136,144:0.51:280
chr3	124454174	.	A	G	23	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=20;MQ=60.0;NF=0;NR=3;PP=23;QD=19.2570708491;SC=TCTGTGCACTAATGTTTTACC;SbPval=1.0;Source=Platypus;TC=6;TCF=1;TCR=5;TR=3;WE=124454182;WS=124454164;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	124458816	rs694897	C	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	124462710	rs3772807	G	C	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.877;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:74,74:0.50:148
chr3	124462986	rs3836305	CT	C	973.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr3	124482494	rs150512726	TTTGTTGAAC	T	5122.73	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:124,133:0.52:257
chr3	124483089	rs2291079	C	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr3	124605736	rs6438861	T	C	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=1.130;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:28,30:0.52:58
chr3	124629222	rs34208404	TA	T	1134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.848;QD=4.96;ReadPosRankSum=2.394;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:130,99:0.43:229
chr3	124642586	rs3841931	CT	C	3213.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:98,101:0.51:199
chr3	124646594	rs4679392	A	G	3238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.446;QD=8.71;ReadPosRankSum=-2.545;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:200,172:0.46:372
chr3	124646705	rs10630030	A	AAAG	10039.73	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	124653710	rs10934701	A	G	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	124692689	rs2270778	C	T	2988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-1.818;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:180,155:0.46:335
chr3	124692785	rs2270779	C	T	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=0.379;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:29,34:0.54:63
chr3	124728472	rs6438868	C	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr3	124728626	rs6438869	A	G	4067.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:202,210:0.51:412
chr3	124729193	rs6784454	T	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr3	124731485	rs10804567	C	G	7388.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr3	124732618	rs6790837	A	G	6532.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	124732842	rs6438871	C	A	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	124733649	rs6438873	T	G	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	124738107	rs59232004	C	T	6147.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	124739892	rs6438874	G	A	10941.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr3	124746049	rs2981546	A	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	124746182	rs2333041	C	A	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr3	124746347	rs4404487	T	C	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	124748226	rs2860440	G	A	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	124774665	.	G	GCAT	998.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=-1.387;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:31,26:0.46:57
chr3	124774779	rs200147885	A	AGGGCAGC	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	124837684	rs621383	T	C	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr3	124839470	rs863642	G	A	21804.77	.	AC=2;AF=1.00;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	1/1:0,839:1.00:839
chr3	124839587	rs368281490	C	T	5078.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:245,251:0.51:496
chr3	124854425	rs702048	T	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	124854636	rs2981503	A	T	3293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=1.089;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:141,167:0.54:308
chr3	124870443	rs73191256	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	124896861	rs545103	C	G	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	124930044	rs673881	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	124930408	rs686088	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	124951171	rs35950048	CT	C	893.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.860;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:19,78:0.80:97
chr3	124951821	rs1053738	C	T	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr3	124998098	rs10665336	C	CAAA	1222.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.82;ReadPosRankSum=-1.349;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:4,37:0.90:41
chr3	125179732	rs112803860	C	CATAA	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.121;QD=18.27;ReadPosRankSum=0.109;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr3	125223456	rs2076724	C	T	3673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-1.770;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:232,194:0.46:426
chr3	125238792	rs56381562	G	A	4700.73	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:271,245:0.47:516
chr3	125250610	rs62270201	A	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr3	125270985	rs10541213	GTATA	G	1976.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:42,66:0.61:108
chr3	125286485	rs370800851	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	125297715	rs2922184	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.10;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	125301711	rs2979382	C	G	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:140,110:0.44:250
chr3	125701099	rs2270986	T	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,53:0.44:121
chr3	125725268	rs111477552	TAACA	T	2146.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:98,59:0.38:157
chr3	125725559	rs1044215	C	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr3	125726048	rs2279819	G	C	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	125734308	rs2279821	G	A	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:106,133:0.56:239
chr3	125775228	rs7613944	T	C	6552.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	125775428	rs6438964	G	A	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	125786695	rs4308225	G	A	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	125786760	rs4308226	G	A	7299.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	125786879	rs4234270	T	C	9598.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr3	125825938	rs9282690	C	T	7483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=819;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.227;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:416,396:0.49:812
chr3	125826003	rs4646750	T	C	8048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=793;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=1.256;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:375,412:0.52:787
chr3	125826059	rs1127717	T	C	2663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-1.845;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:153,132:0.46:285
chr3	125831572	rs4646744	GGC	G	4800.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	125834176	rs11716254	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr3	125836796	rs4646742	C	T	6665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.576;QD=17.27;ReadPosRankSum=-3.876;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:214,172:0.45:386
chr3	125836803	rs4646741	G	A	6879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.600;QD=15.78;ReadPosRankSum=-2.247;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:245,191:0.44:436
chr3	125836833	rs4646740	C	G	5678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.579;QD=8.57;ReadPosRankSum=1.883;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:368,295:0.44:663
chr3	125843400	rs3217578	A	AG	1024.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	125844718	rs2278756	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,42:0.42:99
chr3	125848911	rs1868125	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	125848945	rs2365002	T	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr3	125849031	rs873696	C	T	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	125849238	rs2002287	G	A	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	125850101	rs4646733	CA	TG	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	125850169	rs3821451	T	C	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	125850193	rs3816366	A	G	8749.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr3	125850381	rs2305228	A	G	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	125850434	rs2305227	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr3	125854311	rs3216713	TC	T	5686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.107;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=3.206;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:278,236:0.46:514
chr3	125854409	rs2276724	T	C	12299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=1522;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.244;QD=8.18;ReadPosRankSum=2.729;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:847,656:0.44:1503
chr3	125855599	rs2305229	G	T	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:138,146:0.51:284
chr3	125856695	rs2305230	C	A	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=1.197;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:110,89:0.45:199
chr3	125856916	rs6799991	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	125865766	rs2886059	C	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr3	125874388	rs2276731	C	T	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-0.824;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:40,34:0.46:74
chr3	125876450	rs41266449	C	G	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:145,147:0.50:292
chr3	125878370	rs4646702	C	G	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:78,59:0.43:137
chr3	126062572	.	A	C	937.77	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,49:0.45:110
chr3	126132880	rs4679240	G	A	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	126135070	rs143567171	C	CCGCGTCCCCGGCCTCAGGTCCG	2480.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	126135365	rs6439010	G	T	7600.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	126137558	rs4679242	C	T	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	126138778	rs2271630	T	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	126138889	rs1877967	G	T	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr3	126160884	rs63288960	CATTA	C	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	126169091	rs777493	T	C	8583.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr3	126169230	rs777494	C	T	17986.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr3	126169472	rs777495	T	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	126184941	rs1799389	C	T	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	126185238	rs1687463	C	T	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	126185265	rs3830336	A	AT	1797.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr3	126189919	rs777499	A	G	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	126194076	rs812367	T	C	15769.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr3	126194357	rs7624748	G	C	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.431;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	126202257	rs1687477	G	A	20436.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,777:1.00:777
chr3	126207222	rs777483	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	126208249	rs777479	A	C	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr3	126211479	rs2307882	C	CCTCT	2693.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	126215130	rs6797423	G	A	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	126224480	.	A	AAGGG	3322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DP=501;ExcessHet=3.0103;FS=8.220;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=3.418;QD=8.98;ReadPosRankSum=-1.329;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:197,173:0.47:370
chr3	126226518	rs9784244	C	T	5935.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	126227185	rs16837531	G	A	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:120,107:0.47:227
chr3	126228410	rs729456	G	A	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:106,113:0.52:219
chr3	126236348	rs1687480	T	C	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	126243419	rs7613347	A	C	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=2.589;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:37,61:0.62:98
chr3	126260608	rs6766712	G	T	6158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.038;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:253,304:0.55:557
chr3	126261202	rs1056524	G	A	11388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.53;ReadPosRankSum=0.280;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:234,295:0.56:529
chr3	126261207	rs1056523	C	T	11460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.21;ReadPosRankSum=-0.705;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:223,293:0.57:516
chr3	126261345	rs1056522	G	A	9483.77	.	AC=1;AF=0.500;AN=2;DB;DP=853;set=Intersection	GT:AD:AF:DP	0/1:351,469:0.57:820
chr3	126268918	rs869463	G	A	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:181,146:0.45:327
chr3	126268953	rs869464	T	G	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:102,139:0.58:241
chr3	126270735	rs2291509	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr3	126270757	rs13071443	G	T	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	126328101	rs9856833	A	G	2623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-0.601;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:159,139:0.47:298
chr3	126329910	rs777241	A	G	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr3	126340553	rs3732534	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:70,59:0.46:129
chr3	126365127	rs11453652	C	CT	3406.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	126373994	rs3108755	A	G	13908.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:2,536:1.00:538
chr3	126633419	rs2303994	C	G	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	126644974	rs732462	G	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	126679121	rs113706892	G	C	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:116,83:0.42:199
chr3	126708453	rs6773789	T	C	7461.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:340,376:0.53:716
chr3	126723549	rs28710010	C	T	2553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=1.150;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:101,129:0.56:230
chr3	126724881	rs12489348	G	C	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:103,80:0.44:183
chr3	126726705	rs9876615	A	G	4443.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:197,223:0.53:420
chr3	126726803	rs9876778	A	G	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:89,80:0.47:169
chr3	126735453	rs9858521	C	T	13993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=1541;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=0.273;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:800,724:0.48:1524
chr3	126737268	rs4679323	C	A	4592.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:268,235:0.47:503
chr3	126739012	rs891762	G	T	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:120,101:0.46:221
chr3	126739291	rs6439030	T	C	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	126741011	rs9289290	G	A	5568.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:293,283:0.49:576
chr3	126748689	rs2241676	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr3	126749017	rs2241675	T	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,57:0.43:132
chr3	126751689	rs6439031	G	A	11933.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr3	126880488	rs7625800	T	C	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	127105975	rs11407470	T	TA	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=4.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-0.482;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:65,63:0.49:128
chr3	127292333	rs62264113	G	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr3	127323830	rs893293	C	T	4339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-1.224;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:289,230:0.44:519
chr3	127334598	rs17497118	G	A	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr3	127336934	rs782427	A	G	5948.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:354,324:0.48:678
chr3	127337742	rs17497159	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chr3	127390525	rs41266485	C	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr3	127391018	rs813633	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr3	127391378	rs1056235	G	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr3	127394820	rs35703629	C	T	1997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.172;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:105,105:0.50:210
chr3	127396220	rs1658037	T	C	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr3	127434580	rs627498	G	A	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:251,193:0.43:444
chr3	127434856	rs477554	C	T	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr3	127641968	rs4141499	C	A	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	127642814	rs61268888	G	C	4441.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:222,214:0.49:436
chr3	127703085	rs13100951	G	A	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:92,115:0.56:207
chr3	127775788	rs9847934	T	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.55;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	127983495	rs2811544	T	C	11928.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr3	128181537	rs2953129	C	T	9798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=975;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.534;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:468,494:0.51:962
chr3	128181777	rs2659690	A	G	4994.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:350,262:0.43:612
chr3	128182074	rs2981026	G	A	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:182,144:0.44:326
chr3	128200806	rs11708606	G	A	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:146,155:0.51:301
chr3	128205860	rs1573858	G	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:90,89:0.50:179
chr3	128292060	rs2734045	G	A	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=-0.172;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:52,64:0.55:116
chr3	128292213	rs2734046	A	G	8785.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:2,340:0.99:342
chr3	128292318	rs147519916	ATC	A	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=3.056;QD=0.48;ReadPosRankSum=0.716;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:620,72:0.10:692
chr3	128348735	rs11453536	G	GA	353.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr3	128350684	rs4857914	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	128351054	rs9868579	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr3	128356636	rs150096055	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	128356852	rs1697	C	T	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:119,116:0.49:235
chr3	128363332	rs2811497	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.638;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr3	128580574	rs789248	T	C	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:152,124:0.45:276
chr3	128614133	rs1683791	C	T	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:148,148:0.50:296
chr3	128616325	rs1683804	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,39:0.38:103
chr3	128618366	rs371460179	GGT	G	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.52;ReadPosRankSum=-0.498;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr3	128622742	rs66521976	G	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-0.019;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr3	128625242	rs35020699	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,53:0.55:96
chr3	128627259	rs13081342	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr3	128629332	rs16852190	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=-0.023;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr3	128663861	rs144966675	C	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=2.160;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr3	128663991	rs34092381	G	A	2181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=1.040;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:120,114:0.49:234
chr3	128664519	rs138621669	G	A	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:232,196:0.46:428
chr3	128664549	rs13059115	G	T	4310.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:217,220:0.50:437
chr3	128720487	rs1871951	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr3	128722958	rs73210697	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr3	128755814	rs3732429	T	C	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:161,164:0.50:325
chr3	128755953	rs3732430	G	A	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,61:0.63:97
chr3	128755971	rs3732431	G	A	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr3	128757560	rs2306529	C	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=1.610;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr3	128853622	rs7646403	C	G	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	128859202	rs10664499	C	CTTAG	12316.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=45.79;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	128864520	rs9842978	C	G	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	128864540	rs9880527	A	G	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	128877521	rs4452346	C	T	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	128890350	rs4303883	G	A	11166.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr3	128982861	rs138974815	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr3	129020778	rs6765930	A	G	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,57:0.54:106
chr3	129100288	rs62266952	A	G	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.34;QD=25.98;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	129158944	.	C	T	123.77	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	129168854	.	C	CT	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.368;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:131,39:0.23:170
chr3	129185661	rs6805886	C	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	129278446	rs60442867	GC	G	2948.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:115,121:0.51:236
chr3	129279597	rs2713627	C	T	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	129281980	rs2713625	C	T	6319.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr3	129293183	rs2625962	T	C	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	129303197	rs2811463	T	C	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	129303436	rs2811462	T	G	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:98,117:0.54:215
chr3	129308096	rs13079843	G	A	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=8.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=1.111;SOR=0.059;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr3	129324193	rs7619850	A	G	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.10;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	129390129	rs6769406	C	G	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:142,137:0.49:279
chr3	129546664	rs72987361	C	T	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:187,179:0.49:366
chr3	129546729	rs784689	T	C	11470.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr3	129694934	rs784705	C	A	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	129695538	rs784704	C	T	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	129695954	rs5662	T	C	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	129696041	rs5663	A	G	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	129762660	rs2953771	C	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:97,93:0.49:190
chr3	129811073	rs13066399	T	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.296;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:41,22:0.35:63
chr3	130095031	rs9835065	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr3	130098349	rs16845861	G	A	4676.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:241,240:0.50:481
chr3	130098639	rs142949552	C	T	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:95,100:0.51:195
chr3	130103709	rs1453241	G	A	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:201,182:0.48:383
chr3	130104062	rs10212241	T	C	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:187,128:0.41:315
chr3	130104206	rs10212372	A	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr3	130108063	rs57575291	A	G	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr3	130109993	rs35898730	T	C	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:163,141:0.46:304
chr3	130110550	rs11917356	A	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr3	130113635	rs10934938	T	G	66.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.70;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	130114408	rs5852594	AC	A	3020.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	130122552	rs148970927	TACACAC	T	643.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr3	130129322	rs35886424	G	C	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:100,112:0.53:212
chr3	130129517	rs35209265	A	AG	1381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.62;ReadPosRankSum=-1.577;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:26,41:0.61:67
chr3	130132202	rs16827446	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr3	130132851	rs10512767	A	G	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,61:0.46:133
chr3	130134453	rs13070906	CA	TG	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;JOINED;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr3	130134563	rs7628563	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr3	130135456	rs6439233	T	C	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-1.101;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:40,51:0.56:91
chr3	130135575	rs4688798	A	T	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.278;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=-0.600;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:69,41:0.37:110
chr3	130139884	rs12636289	C	T	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	130141452	rs976325	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.40;ReadPosRankSum=0.697;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr3	130142584	rs2896545	A	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.62;ReadPosRankSum=0.528;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	130142587	rs35980322	AT	A	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.61;ReadPosRankSum=-0.352;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	130142843	rs976558	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr3	130144984	rs1874599	G	C	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	130145175	rs9859372	G	A	2063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.598;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:101,107:0.51:208
chr3	130148510	rs9875499	C	T	14659.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr3	130162395	rs9883988	A	G	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	130174334	rs819085	G	A	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	130187817	rs322113	T	C	10846.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr3	130189918	rs10668406	T	TTG	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=1.478;QD=10.60;ReadPosRankSum=1.138;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	130190630	rs322117	G	A	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:136,149:0.52:285
chr3	130190720	rs11355796	AT	A	3122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=1.026;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:98,111:0.53:209
chr3	130190777	rs322118	G	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:82,75:0.48:157
chr3	130284284	rs9830253	G	A	7011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-1.539;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:350,348:0.50:698
chr3	130286886	rs9836961	T	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.454;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=-2.139;SOR=0.281;set=HC	GT:AD:AF:DP	0/1:38,33:0.46:71
chr3	130289617	rs10934949	T	C	8393.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr3	130300650	rs6439249	T	C	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:139,134:0.49:273
chr3	130308702	rs4515022	A	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	130311398	rs73868925	C	T	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr3	130313017	rs1467015	T	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	130317341	rs4336088	G	A	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr3	130361856	rs16830494	G	A	1822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.476;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.398;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:124,100:0.45:224
chr3	130361930	rs10934950	AC	CT	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr3	130367860	rs10695462	C	CT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.254;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=12.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.403;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr3	130368069	rs7614116	A	G	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:177,164:0.48:341
chr3	130368301	rs7636656	G	A	7514.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:359,370:0.51:729
chr3	130384139	.	CT	C	41	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=10;HapScore=2;MGOF=3;MMLQ=26;MQ=59.44;NF=0;NR=5;PP=41;QD=10.6;SC=AAACAAATTGCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=18;TCF=0;TCR=18;TR=5;WE=130384147;WS=130384129;set=Platypus	GT:AD:AF:DP	1/0:13,5:0.28:18
chr3	130427076	rs2306685	A	C	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.29;ReadPosRankSum=0.078;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr3	130427076	.	ACA	CCG	869	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=5;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=20;NR=5;PP=869;QD=36.8987149945;SC=TAGCTAAAAAACAGTCTTATG;SbPval=0.37;Source=Platypus;TC=44;TCF=37;TCR=7;TR=25;WE=130427086;WS=130427066;set=Platypus	GT:AD:AF:DP	0/1:19,25:0.57:44
chr3	130427078	rs2306684	A	G	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.60;ReadPosRankSum=0.739;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:30,30:0.50:60
chr3	130447530	rs5852606	T	TA	113.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;QD=11.37;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,8:0.80:10
chr3	130569557	rs1316658	T	G	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	130659650	rs73201921	A	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:48,52:0.52:100
chr3	130674022	rs218494	A	G	148.03	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr3	130719948	rs11403338	G	GA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=-1.534;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	130734887	rs34645149	G	GT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.532;QD=6.70;ReadPosRankSum=-0.119;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr3	130748733	rs9864242	A	G	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr3	130828790	rs9850655	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr3	130852185	rs2674613	T	C	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.28;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	130852186	rs2674612	G	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=0.818;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr3	130873723	rs1400013	T	G	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-1.922;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:37,35:0.49:72
chr3	130874017	rs1400012	T	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-1.261;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr3	130881409	rs1913898	T	C	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:77,53:0.41:130
chr3	130884418	rs959073	A	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr3	130947435	rs3738000	A	T	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:97,61:0.39:158
chr3	131186893	rs56928817	CA	C	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.385;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.714;QD=8.49;ReadPosRankSum=-0.296;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr3	131188377	.	TACAC	T,TAC	1621.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.000;QD=28.96;ReadPosRankSum=2.265;SOR=1.436;set=HC	GT:AD:AF:DP	1/2:2,15,39:0.27,0.70:56
chr3	131261662	rs10716194	TG	T	8103.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr3	131388492	rs369611516	C	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:93,50:0.35:143
chr3	131404572	rs6439314	A	C	5971.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	131404592	rs111313223	T	G	2461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.160;QD=11.56;ReadPosRankSum=0.097;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:90,123:0.58:213
chr3	131404625	rs113276957	A	AAC	5392.73	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:236,195:0.45:431
chr3	131415307	rs11707675	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr3	131418719	rs75841703	C	G	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:85,90:0.51:175
chr3	131418898	rs11352473	CT	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.328;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=1.740;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr3	131624385	rs140474722	GAC	G	72.74	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	131756241	rs2141570	T	C	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr3	131756349	rs1569282	A	G	20180.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=2.102;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:2,799:1.00:801
chr3	131756375	rs1569281	A	G	19992.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr3	132063914	rs972774	A	T	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:68,101:0.60:169
chr3	132068831	rs2228402	C	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,69:0.53:130
chr3	132068876	rs2290542	G	A	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:71,84:0.54:155
chr3	132068925	rs2290541	A	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:71,91:0.56:162
chr3	132069028	rs3217658	CAAG	C	619.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	132071452	rs17242113	G	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr3	132075554	rs3181784	T	C	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr3	132075707	rs2071505	A	G	3950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.463;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:186,199:0.52:385
chr3	132075746	rs1042330	G	A	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:114,124:0.52:238
chr3	132153333	rs10662251	T	TAG	4133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.064;QD=18.54;ReadPosRankSum=0.139;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:114,109:0.49:223
chr3	132173004	.	AT	A	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.854;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr3	132182443	rs11328911	TG	T	840.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr3	132192129	rs9829140	T	C	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=2.789;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:37,38:0.51:75
chr3	132196816	rs2369796	A	T	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=1.073;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:56,51:0.48:107
chr3	132218196	rs2088712	C	T	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:67,80:0.54:147
chr3	132218441	rs3834794	A	AT	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	132218623	rs3762672	G	T	4433.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:250,231:0.48:481
chr3	132221076	rs200192843	CTT	C,CT	1737.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=4.448;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.45;MQRankSum=0.525;QD=16.55;ReadPosRankSum=0.790;SOR=1.280;set=HC	GT:AD:AF:DP	1/2:5,56,44:0.53,0.42:105
chr3	132244406	rs754993	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr3	132319361	rs61748105	A	C	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:184,129:0.41:313
chr3	132324108	rs41272315	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr3	132360883	rs821572	C	T	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	132361596	rs9877018	G	A	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=1.488;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:81,84:0.51:165
chr3	132435532	rs67092166	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr3	132435823	rs11718115	C	T	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:33,70:0.68:103
chr3	132435871	rs72628561	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr3	132436901	rs35348816	AT	A	1153.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=20.98;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	132436967	rs66564593	A	G	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.036;QD=9.25;ReadPosRankSum=0.304;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:28,28:0.50:56
chr3	132438719	rs12631786	T	C	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr3	132438747	rs10590809	CAT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.55;ReadPosRankSum=0.524;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr3	133099245	rs1197314	G	A	9302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=1029;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=1.189;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:532,473:0.47:1005
chr3	133108978	rs1197296	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr3	133114513	rs1197301	A	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr3	133114893	rs1197300	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	133166403	rs7644197	A	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	133167363	rs2276737	G	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-1.064;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr3	133191093	rs899458	A	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	133329943	rs1444601	G	A	8050.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr3	133331163	rs11712186	T	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr3	133335787	rs3732574	C	T	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	133335960	rs11715435	A	G	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:82,86:0.51:168
chr3	133335977	rs11707750	G	C	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:92,94:0.51:186
chr3	133343047	rs11719585	T	C	2614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.59;ReadPosRankSum=1.371;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:56,71:0.56:127
chr3	133343050	rs11715407	C	A	2525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=2.195;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:52,63:0.55:115
chr3	133347604	rs62282419	T	C	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=2.061;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:38,40:0.51:78
chr3	133356790	rs17301766	G	A	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:122,131:0.52:253
chr3	133358713	rs11712672	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr3	133362154	rs17301889	A	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:150,109:0.42:259
chr3	133368199	rs10512909	C	T	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.038;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:65,83:0.56:148
chr3	133368362	rs3192149	T	G	9534.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-1.479;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:2,371:0.99:373
chr3	133374030	rs7639941	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	133375785	rs2718801	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:78,50:0.39:128
chr3	133380026	rs11709461	A	T	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr3	133380130	rs2718805	T	C	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	133483696	rs1880669	T	C	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:103,106:0.51:209
chr3	133485133	rs2692696	A	G	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr3	133485371	rs1525891	G	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr3	133486958	rs8649	G	C	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:82,88:0.52:170
chr3	133489583	rs1525890	G	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr3	133493705	rs35736766	GT	G	1684.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:32,126:0.80:158
chr3	133493827	rs2715626	T	C	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:81,107:0.57:188
chr3	133494354	rs1049296	C	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:124,96:0.44:220
chr3	133524717	rs1107413	G	C	5218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-0.375;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:276,255:0.48:531
chr3	133553272	rs6793673	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,62:0.56:110
chr3	133553527	rs2280672	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr3	133556964	rs139009223	ACCGTGCCGGGCC	A	1730.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:87,85:0.49:172
chr3	133560005	rs201380383	CGCACACACATGCGTGT	C	7244.73	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:227,190:0.46:417
chr3	133560423	rs41272335	G	A	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:93,136:0.59:229
chr3	133692497	rs4634113	A	G	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	133692743	rs4241362	C	T	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	133692837	rs13063838	A	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr3	133698280	rs4640563	C	G	7368.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr3	133901733	rs9829505	A	C	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	133910967	rs138457073	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr3	133941504	rs9865808	G	A	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	133941534	rs7611104	A	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	133969437	.	A	AG	1352.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	133969487	.	G	GC	901.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.20;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	134077470	rs1353776	C	G	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	134080661	rs1077718	A	G	5540.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	134214042	rs62269547	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr3	134225942	.	T	C	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=2.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=3.377;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:55,51:0.48:106
chr3	134226159	rs6766818	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr3	134256159	rs12634127	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr3	134264859	rs1357762	A	C	31.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.60;ReadPosRankSum=-0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr3	134266124	rs12637751	A	G	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:70,76:0.52:146
chr3	134266148	rs12632372	G	C	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	134266321	rs11927068	A	G	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-0.605;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:56,50:0.47:106
chr3	134270584	rs148237959	TATATATATATATAC	T	109	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.64;QD=27.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	134277195	rs35934324	A	AT	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;MQ=60.26;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	134278270	rs1127826	C	T	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr3	134280395	rs6777283	T	A	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	134293619	rs4586863	A	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	134322742	rs2293293	A	G	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:151,183:0.55:334
chr3	134322814	rs2293294	G	C	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:184,128:0.41:312
chr3	134323156	rs4955535	A	G	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr3	134331874	rs7626611	T	C	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	134331980	rs9838119	C	T	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:126,115:0.48:241
chr3	134348638	rs62270962	C	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr3	134514579	rs9852662	T	C	22929.77	.	AC=2;AF=1.00;AN=2;DB;DP=927;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,896:1.00:896
chr3	134644517	rs36187	A	G	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	134644636	rs635721	G	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	134670524	rs7644369	C	T	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr3	134697009	rs373709784	A	AC	396.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	134898742	rs1042787	C	T	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:143,116:0.45:259
chr3	134898960	rs10512945	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr3	134967368	rs11717042	G	A	2685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=1.873;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:147,138:0.48:285
chr3	134968465	rs4243397	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	135720572	rs145130777	G	A	8529.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr3	135913665	rs1992952	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	136059537	rs503973	G	C	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	137717991	rs6764398	G	C	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr3	137743508	rs17204075	A	T	9852.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:155,458:0.75:613
chr3	137748521	rs41265449	T	G	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:31,113:0.78:144
chr3	137748586	rs41265451	G	A	7368.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:96,334:0.78:430
chr3	137748822	rs58607601	C	CA	685.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr3	137749839	rs16847742	A	G	6569.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:76,307:0.80:383
chr3	137750056	rs55923693	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr3	137781923	rs329388	A	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	137783700	rs179282	T	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:17,53:0.76:70
chr3	137786442	rs442800	T	C	7218.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:135,333:0.71:468
chr3	137786696	rs3856632	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.938;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr3	137787047	rs374045	C	T	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	137787192	rs446644	T	C	9925.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:2,391:0.99:393
chr3	137787282	rs419075	T	C	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	137787355	rs446847	T	C	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	137787935	rs382629	G	A	7761.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr3	137787963	rs445025	T	G	10778.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=24.11;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr3	137788123	rs425938	T	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	137788141	rs407009	T	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr3	137799291	rs384828	A	T	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:54,143:0.73:197
chr3	137799498	rs405602	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr3	137800656	rs2622711	A	G	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:62,122:0.66:184
chr3	137807259	rs2724693	G	A	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:49,111:0.69:160
chr3	137816817	rs7629243	A	C	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:26,65:0.71:91
chr3	137843018	rs1564496	G	C	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:42,159:0.79:201
chr3	137843106	rs2170309	T	C	9556.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:160,439:0.73:599
chr3	137843476	rs2246945	G	T	9959.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:212,473:0.69:685
chr3	137850003	rs2724691	A	G	7938.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:228,377:0.62:605
chr3	137880695	rs9851548	A	G	3671.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:52,158:0.75:210
chr3	137880743	rs2622736	G	A	8448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=1.394;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:153,384:0.72:537
chr3	137881265	rs3732839	T	A	10795.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:195,499:0.72:694
chr3	137882377	rs2622734	G	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr3	137882752	rs2622733	A	G	3613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.07;ReadPosRankSum=-0.876;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:40,160:0.80:200
chr3	137954114	.	TAA	T	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.812;QD=5.64;ReadPosRankSum=-2.183;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr3	137958438	rs6778511	C	T	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	137981439	.	TA	T	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DP=474;ExcessHet=3.0103;FS=4.389;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.594;QD=0.71;ReadPosRankSum=1.211;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:326,97:0.23:423
chr3	137982718	rs939453	T	G	3487.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:77,158:0.67:235
chr3	138020275	rs7637162	A	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.63;QD=27.32;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	138020677	rs6801411	C	T	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	138025136	rs3856636	T	G	5994.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	138025396	rs9846480	A	G	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-1.787;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:111,44:0.28:155
chr3	138033181	rs9289556	C	T	16917.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chr3	138043535	.	TACACAC	T	390.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=35.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	138091701	rs1199333	G	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.526;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr3	138170788	rs13095961	T	G	9927.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr3	138171042	rs4678418	C	T	3013.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:42,113:0.73:155
chr3	138173905	rs56236670	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr3	138176533	rs66644444	A	T	5572.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:99,259:0.72:358
chr3	138179308	rs67037472	G	A	3845.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:62,162:0.72:224
chr3	138179328	rs6763380	C	T	4923.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:90,215:0.70:305
chr3	138187568	rs1679167	C	T	11315.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:232,531:0.70:763
chr3	138188485	rs13316499	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr3	138189031	rs2347469	T	C	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	138189658	rs3813264	A	G	7871.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr3	138191232	rs10935282	G	A	11289.77	.	AC=1;AF=0.500;AN=2;DB;DP=746;set=Intersection	GT:AD:AF:DP	0/1:213,511:0.71:724
chr3	138195529	rs1679169	C	T	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:66,123:0.65:189
chr3	138244400	rs9878436	C	T	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-0.517;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:123,47:0.28:170
chr3	138248009	rs34094770	G	GA	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=1.580;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr3	138251302	rs7643973	G	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.640;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr3	138251447	rs10549552	CGGTAT	C	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.836;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:95,24:0.20:119
chr3	138289163	rs1673608	T	C	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:20,77:0.79:97
chr3	138289221	rs1673607	C	T	7146.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:112,327:0.74:439
chr3	138329862	rs811322	G	A	8518.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:168,397:0.70:565
chr3	138341284	rs11303336	CT	C	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.586;QD=6.03;ReadPosRankSum=0.270;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:22,34:0.61:56
chr3	138400782	rs145780817	GA	G	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.072;QD=0.12;ReadPosRankSum=2.108;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:351,77:0.18:428
chr3	138417989	rs361080	G	A	188.56	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr3	138433568	rs497900	C	T	11665.77	.	AC=1;AF=0.500;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	0/1:296,565:0.66:861
chr3	138456486	.	A	AAT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.481;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:64,11:0.15:75
chr3	138668233	rs5852928	C	CGT,CGTGT	802.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=70;set=Intersection	GT:AF:DP	1/2:0.26,0.56:54
chr3	138724757	rs11924188	C	G	35389.77	.	AC=2;AF=1.00;AN=2;DB;DP=1379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=26.14;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,1354:1.00:1354
chr3	138739617	rs1720230	A	G	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	138882076	rs9843067	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=1.165;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr3	138882086	rs13097893	G	A	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:14,52:0.79:66
chr3	139065988	rs1610195	C	T	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	139066902	rs10755092	A	T	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	139068008	rs11706615	T	A	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	139068277	rs10935321	G	A	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	139075644	rs9878548	C	A	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	139075938	rs7833	C	T	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	139077527	.	G	GA	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.076;QD=0.79;ReadPosRankSum=0.381;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:399,96:0.19:495
chr3	139081416	rs57549985	TTA	T	1914.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	139088481	rs11717119	T	C	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	139090736	rs7373116	G	A	7272.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	139102120	rs7373302	C	A	14517.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:1,550:1.00:551
chr3	139108250	rs3215032	C	CTG	3721.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	139236683	rs2071388	C	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	139246382	rs295493	A	G	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	139257545	rs34662123	GC	G	2816.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	139280328	rs35898558	G	GA	1263.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	139297655	rs10513083	A	G	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:90,58:0.39:148
chr3	139318241	rs1846021	A	T	2669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-1.998;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:142,136:0.49:278
chr3	139654444	rs9821708	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.742;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr3	139654466	rs9821843	T	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.765;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr3	139894697	rs4305391	T	C	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	140122341	rs4683494	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	140167536	rs2081803	A	G	8920.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr3	140178279	rs9836487	G	A	5535.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:86,247:0.74:333
chr3	140178485	rs7632885	G	A	14997.77	.	AC=1;AF=0.500;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	0/1:223,676:0.75:899
chr3	140178638	rs10590825	CCCT	C	11544.73	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:100,288:0.74:388
chr3	140251487	rs349536	T	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	140281723	rs11714465	C	T	9110.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:187,422:0.69:609
chr3	140282084	rs4683509	C	G	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr3	140282861	rs10804675	C	T	12908.77	.	AC=1;AF=0.500;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	0/1:235,600:0.72:835
chr3	140285115	rs4683510	T	C	341.88	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr3	140401693	rs698673	A	G	39860.77	.	AC=2;AF=1.00;AN=2;DB;DP=1483;set=Intersection	GT:AD:AF:DP	1/1:0,1452:1.00:1452
chr3	140406947	rs28594654	G	A	34833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.414;ClippingRankSum=0.000;DB;DP=2098;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.82;ReadPosRankSum=1.760;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:478,1593:0.77:2071
chr3	140407260	rs9876490	C	A	14383.77	.	AC=1;AF=0.500;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	0/1:224,641:0.74:865
chr3	140419715	rs1540506	C	T	7761.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:107,357:0.77:464
chr3	140675348	.	CT	C	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.286;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:118,74:0.39:192
chr3	140678384	.	TA	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.939;QD=0.76;ReadPosRankSum=-1.536;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:134,47:0.26:181
chr3	140692486	rs2555707	G	T	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	140851016	.	G	GT	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DP=434;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.758;QD=1.09;ReadPosRankSum=-0.225;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:322,79:0.20:401
chr3	140978921	rs3796259	C	T	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.105;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:119,53:0.31:172
chr3	140979184	rs1511378	T	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	140997320	rs11556022	C	T	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:153,154:0.50:307
chr3	140998214	rs13087169	G	A	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:224,197:0.47:421
chr3	141277651	rs13084444	T	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr3	141299397	rs10635293	T	TACACAC	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=0.464;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr3	141327474	rs295323	G	A	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:147,144:0.49:291
chr3	141327593	rs2312266	C	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr3	141331222	rs2172471	G	A	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-2.885;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr3	141535558	rs36009541	A	G	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:87,75:0.46:162
chr3	141535608	rs33928105	C	A	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:163,149:0.48:312
chr3	141625999	rs7622417	G	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=0.183;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr3	141641015	rs3765155	C	G	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	141644274	rs1131029	G	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	141709083	rs6440055	A	G	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=25.13;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	141812759	rs9877817	G	A	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	141904474	rs6785098	C	T	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	141904977	rs6440065	G	A	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.178;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:83,86:0.51:169
chr3	141905253	rs9837628	C	A	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-1.370;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr3	141905259	rs9857725	T	G	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-1.971;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr3	141905261	rs9857726	T	G	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-1.329;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr3	141917810	rs74836705	T	C	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=0.650;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:28,45:0.62:73
chr3	141923506	rs9830411	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	141932356	rs6440072	G	A	5062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.821;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:251,250:0.50:501
chr3	141932531	rs11926898	T	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr3	142089971	.	C	CA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.231;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	142094816	.	GCA	G	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-1.234;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:83,14:0.14:97
chr3	142133144	rs9813698	A	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr3	142168331	rs1802904	C	T	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:265,247:0.48:512
chr3	142217537	rs2227932	A	G	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:54,68:0.56:122
chr3	142241692	rs112116713	G	GA	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.615;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:180,55:0.23:235
chr3	142272275	.	AAC	A	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.050;QD=2.71;ReadPosRankSum=-1.887;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chr3	142607487	rs1457684	C	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr3	142669479	rs4683440	A	G	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:95,102:0.52:197
chr3	142670467	rs2270767	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr3	142681249	rs62276870	G	A	5475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.333;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:263,277:0.51:540
chr3	142720348	rs766360	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	142729433	rs2173599	T	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	142730774	rs2124541	T	G	9059.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr3	142752293	rs1449869	G	A	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	142756907	rs11929440	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	142773738	rs10935479	C	T	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	142895298	.	T	G	1136.77	.	AC=1;AF=0.500;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	0/1:108,62:0.36:170
chr3	142985100	rs1046706	G	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	142985837	rs148013960	AT	A	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.160;QD=3.11;ReadPosRankSum=-2.211;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr3	142985890	rs12493372	T	A	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	143214114	rs838598	T	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	143271176	rs1525862	C	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr3	143293012	rs6763202	A	G	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:96,83:0.46:179
chr3	143296258	rs35417581	A	C	7199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-0.480;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:366,365:0.50:731
chr3	143297591	rs13076949	A	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr3	143412268	rs12488981	T	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,52:0.47:110
chr3	143530497	rs72993346	A	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=1.440;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr3	143567207	rs11714060	A	G	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr3	143692018	rs2279856	C	G	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr3	145788467	rs6710	T	C	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	145788803	rs2305274	T	C	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	145790948	rs7639592	A	G	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	145794776	rs142623177	CTTTA	C	54.70	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	145795559	rs9874388	A	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	145803138	rs1375583	T	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	145803142	rs1375582	T	A	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	145804524	rs3804668	C	A	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	145809750	rs3792341	T	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	145820684	rs3762691	G	A	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	145824478	rs9289716	A	G	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	145824504	rs7614409	G	A	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	145828256	rs3842573	G	GT	2104.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	145838895	rs4681297	C	T	12230.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr3	145841294	rs10663012	A	AAAAC	1033.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	145841854	rs6802384	T	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	145912177	rs9815240	T	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:73,49:0.40:122
chr3	145912299	rs1512902	C	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr3	145917761	rs1061409	T	C	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.618;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:49,61:0.55:110
chr3	145924591	rs35080966	A	AT	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.443;QD=15.62;ReadPosRankSum=-0.900;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	145924632	rs3762688	C	T	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	145938528	rs3762686	C	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	145938619	rs3762685	T	C	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr3	145938782	rs9850144	C	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr3	145939691	rs3804648	C	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	145939755	rs3840204	C	CA	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=1.517;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr3	145939776	rs3804647	T	G	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.84;ReadPosRankSum=1.654;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chr3	146113576	rs11340803	CT	C	802.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr3	146159764	rs4355250	T	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.58;ReadPosRankSum=-0.210;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	146167163	.	C	CA	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.367;QD=2.72;ReadPosRankSum=-0.873;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:87,38:0.30:125
chr3	146176075	rs12494007	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=0.313;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr3	146177594	.	G	GT	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=1.556;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:49,24:0.33:73
chr3	146177815	rs6806535	C	T	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:109,117:0.52:226
chr3	146251430	rs2738905	A	G	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.23;ReadPosRankSum=0.103;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr3	146251433	rs2587024	T	G	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.90;ReadPosRankSum=0.212;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr3	146303750	rs342902	G	A	129.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	146307339	rs56763997	T	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr3	146307635	rs343289	C	A	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	146311589	rs12107668	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=1.059;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr3	146311937	rs147223969	CA	C	198.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr3	146312941	rs6787813	G	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr3	146313036	rs6787741	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.744;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	146318263	rs9867955	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr3	146322886	rs9818634	G	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	147111779	rs62273364	T	C	5446.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	147111904	.	C	CCTCT	648.73	.	AC=1;AF=0.500;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;QD=36.04;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr3	147113586	rs73004638	A	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr3	147121650	rs78614461	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	148459988	rs5186	A	C	6890.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chr3	148575156	rs2331407	C	T	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr3	148575380	rs35811007	C	T	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:112,135:0.55:247
chr3	148575441	rs1356259	C	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr3	148575476	rs3044024	C	CAA	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr3	148597612	rs12489516	C	T	10000.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr3	148714841	rs140818906	TTGTG	T	676.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr3	148727133	rs4938	G	A	4669.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:184,231:0.56:415
chr3	148741914	rs201672568	C	T	5399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.193;QD=10.86;ReadPosRankSum=-2.424;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:224,273:0.55:497
chr3	148756825	rs6764352	G	A	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	148759325	rs2290725	T	C	2151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-0.762;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:215,130:0.38:345
chr3	148764090	rs1017489	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.55;ReadPosRankSum=0.253;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	148786085	rs2305868	T	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:89,76:0.46:165
chr3	148786108	rs812249	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:72,57:0.44:129
chr3	148868292	rs150286093	GC	G	520.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr3	148868361	rs2689232	C	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:66,75:0.53:141
chr3	148872987	rs6440589	G	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	148879878	rs61615092	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.73;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	148879883	rs57943258	A	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.605;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr3	148880229	rs67649453	CAG	C	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	148881673	rs3732557	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:61,44:0.42:105
chr3	148885077	rs2681092	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr3	148885779	rs11426099	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=1.045;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	148885851	rs2681096	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	148890105	.	TCA	T,TCACACACACACA	146.74	.	AC=1,0;AF=0.500,0.00;AN=2;DP=24;set=Intersection	GT:AF:DP	0/1:0.64:11
chr3	148896430	rs16861582	A	G	4168.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:197,213:0.52:410
chr3	148901406	rs143522213	AC	A	129.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr3	148916235	rs701753	T	A	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	148930096	rs34300334	T	A	792.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-0.216;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr3	148930218	rs17847023	G	A	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:109,125:0.53:234
chr3	148935893	rs16861636	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr3	148939393	rs3736282	C	T	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=1.645;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:83,52:0.39:135
chr3	149039324	rs2015626	G	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr3	149050925	rs1526786	T	C	2377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=0.387;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:88,118:0.57:206
chr3	149087404	rs8479	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	149087714	rs6776940	T	C	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	149093238	rs4771	A	G	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	149095074	rs116790485	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr3	149192851	rs143312618	G	GC	2686.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:122,91:0.43:213
chr3	149192906	rs74723974	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr3	149193684	rs1802837	T	C	5897.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:266,299:0.53:565
chr3	149238595	rs112399999	C	CTTAA	2684.73	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:154,75:0.33:229
chr3	149243638	rs28763912	G	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=0.328;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr3	149243694	rs9854499	G	C	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	149258970	rs5853413	CA	C	135.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr3	149374572	rs113228569	T	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=6.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=1.130;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:64,11:0.15:75
chr3	149374574	rs142250733	T	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=7.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=1.109;SOR=1.729;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr3	149374576	rs145173717	T	A	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=7.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=1.176;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr3	149374578	rs151019600	T	A	936.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=7.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.953;SOR=1.684;set=HC	GT:AD:AF:DP	0/1:66,29:0.31:95
chr3	149374873	rs1055153	G	T	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:174,172:0.50:346
chr3	149459341	rs7633238	A	G	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:108,101:0.48:209
chr3	149468530	rs9843784	T	G	3159.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:188,166:0.47:354
chr3	149479301	rs954714	C	T	4068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-1.035;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:354,225:0.39:579
chr3	149481974	rs4681189	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr3	149485293	rs7610425	T	C	5154.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:335,263:0.44:598
chr3	149488309	rs7630033	A	G	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=1.824;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:34,35:0.51:69
chr3	149488442	rs7630153	A	G	7161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.695;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:453,392:0.46:845
chr3	149510262	rs4681554	A	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	149564075	rs6440641	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	149613232	rs143625944	ATT	A	1190.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.89;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:7,50:0.88:57
chr3	149629884	rs73157016	C	T	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:54,73:0.57:127
chr3	149678534	rs6768054	C	T	17310.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr3	149679148	rs61689176	T	TA	4085.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.222;QD=12.02;ReadPosRankSum=1.182;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:89,251:0.74:340
chr3	149686366	rs35842204	AAC	A	578.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=4.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.772;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:176,73:0.29:249
chr3	149686367	rs61268501	AC	A	1363.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=1.403;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:139,120:0.46:259
chr3	149686368	rs68033203	C	A	163.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.251;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-1.970;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:215,44:0.17:259
chr3	149700519	rs7630407	T	C	17936.77	.	AC=1;AF=0.500;AN=2;DB;DP=1318;set=Intersection	GT:AD:AF:DP	0/1:457,860:0.65:1317
chr3	149701113	rs34404328	CG	C	1287.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr3	150128154	rs61734437	T	C	8388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=1925;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.292;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:1346,541:0.29:1887
chr3	150128392	rs879634	G	A	8884.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:200,402:0.67:602
chr3	150128484	rs3749400	C	A	4056.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:449,231:0.34:680
chr3	150128994	rs34647320	T	G	7432.77	.	AC=1;AF=0.500;AN=2;DB;DP=1534;set=Intersection	GT:AD:AF:DP	0/1:1038,473:0.31:1511
chr3	150129171	rs3840253	A	AT	3221.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	150396151	rs113703460	T	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-1.022;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr3	150398311	rs144597450	C	A	6243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-1.263;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:203,298:0.59:501
chr3	150420057	.	C	CTTT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=14.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-0.518;SOR=1.726;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr3	150420588	rs10663389	G	GTTAAA	24416.73	.	AC=2;AF=1.00;AN=2;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=47.23;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,517:1.00:517
chr3	150420604	.	A	AG	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.860;QD=0.41;ReadPosRankSum=-2.566;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:402,98:0.20:500
chr3	150420606	rs9824030	T	G	5367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.672;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.051;QD=10.55;ReadPosRankSum=2.700;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:137,372:0.73:509
chr3	150420608	rs9879627	G	T	8997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.082;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.757;QD=17.64;ReadPosRankSum=-1.052;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:82,428:0.84:510
chr3	150420676	rs10663390	A	AGT,AGTGT	5640.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.96;MQRankSum=-0.454;QD=32.61;ReadPosRankSum=-2.025;SOR=0.700;set=HC	GT:AD:AF:DP	1/2:15,26,132:0.15,0.76:173
chr3	150420781	rs71676608	CAG	C	3479.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.46;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	150421527	.	C	CTCCTCCTCCTCCTCCACCTCT	2424.73	.	AC=1;AF=0.500;AN=2;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;QD=55.11;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr3	150603248	rs57919280	G	GAAAAGC	32860.73	.	AC=2;AF=1.00;AN=2;DB;DP=784;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=44.05;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:5,741:0.99:746
chr3	150690566	rs3796240	T	C	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	150804908	rs7653870	T	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,22:0.27:82
chr3	150834015	rs4680158	G	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	150876464	rs55676007	TG	T	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.069;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.950;QD=12.19;ReadPosRankSum=0.200;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr3	150883600	rs2567322	C	T	4505.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:166,219:0.57:385
chr3	150883777	rs34434571	A	AT	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=2.505;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr3	150910640	rs1231520	G	C	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	150917000	rs3773614	T	G	3866.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:242,201:0.45:443
chr3	150931799	rs138172429	G	A	6946.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:208,336:0.62:544
chr3	151011944	rs12492699	A	C	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr3	151011969	rs1048408	G	A	7279.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr3	151012497	rs2242353	T	C	28434.77	.	AC=2;AF=1.00;AN=2;DB;DP=1080;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,1062:1.00:1062
chr3	151045661	rs1491980	G	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	151046308	rs1466684	G	A	7172.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr3	151056598	rs6809699	A	C	9833.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	151067730	rs1565574	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	151073033	rs7615865	T	C	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	151073937	rs1994730	T	C	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	151085578	rs3732764	C	A	15306.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr3	151112568	rs3732768	G	A	12171.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr3	151143354	rs10653830	T	TTG	919.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.099;QD=8.44;ReadPosRankSum=-1.510;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:58,51:0.47:109
chr3	151143447	rs6440742	G	T	4252.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:161,215:0.57:376
chr3	151154435	rs142016761	A	AAAT	732.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr3	151154666	rs2172250	T	C	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:99,82:0.45:181
chr3	151155620	rs6781302	G	A	9465.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	0/1:289,450:0.61:739
chr3	151158184	rs937126	A	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr3	151158265	rs937125	G	A	3384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=1.789;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:95,153:0.62:248
chr3	151158502	rs10663807	T	TAG	1851.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr3	151165678	rs9871952	T	C	3997.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:139,192:0.58:331
chr3	151166422	rs6798252	C	T	10659.77	.	AC=1;AF=0.500;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	0/1:356,510:0.59:866
chr3	151171439	rs7619322	A	C	7124.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:232,344:0.60:576
chr3	151171542	rs7621591	A	G	2506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-0.200;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:91,117:0.56:208
chr3	151283646	rs7631281	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	151463421	rs1972977	G	T	6531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.218;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:262,330:0.56:592
chr3	151538304	.	C	CTTTT	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=1.022;QD=6.84;ReadPosRankSum=-1.695;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr3	151542408	rs148745568	AAAAC	A	2087.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;MQ=60.44;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	151542732	rs62272917	A	C	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.872;QD=14.38;ReadPosRankSum=-0.336;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:20,29:0.59:49
chr3	151542737	rs13098550	G	A	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	151542749	rs151253803	CTATT	C	1346.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	151542763	rs377047578	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	151545318	rs2410837	A	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	151545321	rs11306821	GT	G	772.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	151545323	rs62272918	T	G	781.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	151545601	rs1803155	G	A	16032.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr3	151599393	rs13079080	C	T	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:25,82:0.77:107
chr3	151987506	rs148863620	TTTC	T	1730.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=4.116;MLEAC=1;MLEAF=0.500;MQ=61.01;MQRankSum=1.817;QD=7.90;ReadPosRankSum=2.243;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:98,121:0.55:219
chr3	152058449	rs13077912	A	G	6637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=1293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-0.969;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:869,406:0.32:1275
chr3	152553628	rs1065776	C	T	8006.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:205,370:0.64:575
chr3	152554357	rs701265	A	G	21870.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,801:1.00:801
chr3	153839866	rs12493885	G	C	36649.77	.	AC=2;AF=1.00;AN=2;DB;DP=1440;set=Intersection	GT:AD:AF:DP	1/1:0,1412:1.00:1412
chr3	153839959	rs59508481	C	T	5648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.197;ClippingRankSum=0.000;DB;DP=1299;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=2.347;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:934,352:0.27:1286
chr3	153839960	rs12497267	T	C	40629.77	.	AC=2;AF=1.00;AN=2;DB;DP=1288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.92;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,1273:1.00:1273
chr3	153840389	rs13096373	T	C	20712.77	.	AC=1;AF=0.500;AN=2;DB;DP=1399;set=Intersection	GT:AD:AF:DP	0/1:443,927:0.68:1370
chr3	153847582	rs1626280	T	A	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,31:0.30:102
chr3	153870511	rs1727956	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.388;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.428;SOR=0.031;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr3	153970704	rs2307750	CTT	C	2598.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	153970796	rs355752	A	G	13027.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.16;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:0,498:1.00:498
chr3	153972500	rs355749	T	C	18280.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr3	153994502	rs355787	T	C	6596.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	154007682	rs355758	G	C	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	154010515	rs149798542	AAC	A	1417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=4.499;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.821;QD=12.55;ReadPosRankSum=-3.686;SOR=0.281;set=HC	GT:AD:AF:DP	0/1:35,78:0.69:113
chr3	154018887	rs9438	G	C	8581.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr3	154021063	rs355756	G	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	154024165	rs355754	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	154033066	rs71308484	G	A	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:235,80:0.25:315
chr3	154146922	rs34792862	A	G	10104.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:2,379:0.99:381
chr3	154147424	.	AT	A	589.73	.	AC=1;AF=0.500;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	0/1:100,29:0.22:129
chr3	154834379	rs10522735	G	GTATATATATA,GTATATA	3463.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=135;set=Intersection	GT:AF:DP	1/1:0.96:99
chr3	154858199	.	CTT	C	426.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;QD=23.71;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	154859854	rs138800488	G	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:306,165:0.35:471
chr3	154861294	rs138776903	G	A	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:299,172:0.37:471
chr3	154866453	rs1436633	T	C	4942.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:152,239:0.61:391
chr3	154866545	rs1436632	A	C	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:61,102:0.63:163
chr3	154878158	rs35450782	GA	G	2706.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr3	154890206	rs3816803	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr3	154890512	rs11445808	C	CT	673.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=0.255;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:56,56:0.50:112
chr3	154898407	rs701109	C	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr3	155205993	rs368444721	C	CT	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=1.437;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:112,53:0.32:165
chr3	155212325	rs3214639	G	GA	1820.73	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:149,102:0.41:251
chr3	155241593	rs9840061	A	G	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:89,87:0.49:176
chr3	155241740	rs9840234	A	G	11788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.001;ClippingRankSum=0.000;DB;DP=1711;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-2.500;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:1035,671:0.39:1706
chr3	155271825	rs359549	G	A	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	155311593	rs75934266	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-1.239;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	155314034	rs359569	A	G	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	155314296	rs359570	A	G	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	155481609	rs7653384	G	A	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	155485302	rs358733	C	T	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	155522044	rs63242260	ATAT	A	1447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.13;ReadPosRankSum=1.925;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:23,37:0.62:60
chr3	155523375	rs10563990	GCGCA	G	2884.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	155551206	rs7649631	C	T	2194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=4.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-2.337;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:85,102:0.55:187
chr3	155551894	rs422497	A	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr3	155611557	rs6441026	T	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	155643189	.	C	CT	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=4.695;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-1.049;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:43,24:0.36:67
chr3	155654432	rs3772113	T	A	459.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	155836231	rs13093154	C	T	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-1.329;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:89,49:0.36:138
chr3	155991348	rs1160221	G	T	25177.77	.	AC=2;AF=1.00;AN=2;DB;DP=975;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=26.17;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,962:1.00:962
chr3	156175109	rs34093583	C	CTT	1482.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:74,43:0.37:117
chr3	156175167	rs2293194	GG	AA	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;JOINED;set=Intersection	GT:AD:AF:DP	0/1:161,87:0.35:248
chr3	156234268	rs4295133	A	G	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	156249407	rs2280030	G	C	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	156261110	rs1983206	T	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=0.086;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr3	156262232	rs6792998	C	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:92,38:0.29:130
chr3	156266642	rs6809188	C	T	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	156266774	rs9296	C	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=0.660;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr3	156266880	rs3773716	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.80;ReadPosRankSum=-2.000;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	156271595	rs2292337	G	A	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-0.498;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:46,33:0.42:79
chr3	156271608	rs2292338	G	A	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.09;ReadPosRankSum=-2.021;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr3	156271627	rs2292339	C	T	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=2.731;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:38,23:0.38:61
chr3	156395329	rs345986	G	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr3	156399180	rs3851992	G	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr3	156411732	rs193197	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr3	156413615	rs10631452	C	CTT	1354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.15;ReadPosRankSum=2.660;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:11,68:0.86:79
chr3	156421525	rs34277251	G	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr3	156431750	rs61733487	A	G	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	156544584	rs344071	C	T	5619.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:394,290:0.42:684
chr3	156570521	rs111501048	T	TA	409.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr3	156570703	rs414683	A	G	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:60,78:0.57:138
chr3	156638503	rs7609851	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	156645196	rs200029200	A	AT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-0.368;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr3	156697090	rs10558622	TATAAC	T	2282.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:44,59:0.57:103
chr3	156697097	rs6780427	G	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:59,40:0.40:99
chr3	156864398	rs370594663	TAAAAAA	T	2948.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.560;QD=20.34;ReadPosRankSum=2.340;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:56,89:0.61:145
chr3	156864419	.	TA	T	1639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.994;QD=9.88;ReadPosRankSum=0.349;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:60,106:0.64:166
chr3	156864551	rs6783595	T	A	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr3	156867776	rs377312008	G	GAA	1889.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:71,78:0.52:149
chr3	156870059	rs73154633	C	T	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=-0.490;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:61,113:0.65:174
chr3	156870816	rs41272613	A	G	10805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=890;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=0.492;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:349,528:0.60:877
chr3	156876502	rs6441114	G	A	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr3	156876574	rs6441115	A	G	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:137,149:0.52:286
chr3	156876803	rs6441116	T	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:61,66:0.52:127
chr3	156877142	rs139556532	C	G	2388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=1.170;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:94,116:0.55:210
chr3	156877276	rs59715654	CAA	C	9075.73	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:191,235:0.55:426
chr3	156877357	rs10936061	T	C	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:73,115:0.61:188
chr3	156877530	rs12635088	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr3	157004323	rs4680353	A	C	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:246,155:0.39:401
chr3	157082082	rs3833585	C	CAA	1463.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr3	157146005	rs9289983	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr3	157146307	rs1456099	A	T	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:165,131:0.44:296
chr3	157154861	rs2305619	A	G	5495.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:384,294:0.43:678
chr3	157155314	rs3816527	C	A	4658.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:357,259:0.42:616
chr3	157188045	rs1456113	A	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr3	157188378	rs1011060	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr3	157296325	rs147729645	C	CATATAT	183.74	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	157817517	rs9833383	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	157820423	rs4462902	C	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	157822669	rs1915940	T	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	157822821	.	GCC	G	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.671;QD=25.40;ReadPosRankSum=0.323;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr3	157841531	rs6789448	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr3	157849957	rs1609526	C	T	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.029;QD=9.40;ReadPosRankSum=-0.715;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:35,35:0.50:70
chr3	158072623	.	A	AT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=4.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-0.236;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:148,27:0.15:175
chr3	158072776	rs5853823	TA	T	932.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.914;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.357;QD=8.88;ReadPosRankSum=-0.243;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:36,69:0.66:105
chr3	158178856	rs73172119	G	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=1.404;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr3	158254806	rs73154326	A	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:35,8:0.19:43
chr3	158300732	rs2566341	A	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	158306627	rs1075551	A	G	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:379,236:0.38:615
chr3	158308875	rs2566339	T	C	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	158308948	rs11314613	CT	C	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.77;ReadPosRankSum=1.175;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:34,46:0.57:80
chr3	158310153	rs6771248	A	G	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=2.537;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:31,36:0.54:67
chr3	158310391	rs34234841	CAGTT	C	4444.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:109,117:0.52:226
chr3	158310483	rs6780477	G	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr3	158314810	rs45471897	C	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr3	158318015	rs2639656	C	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	158320597	rs4875	T	C	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr3	158320703	rs15967	C	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.187;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr3	158362441	rs1864507	T	C	1944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=0.185;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:186,111:0.37:297
chr3	158366900	rs2303909	G	A	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:92,43:0.32:135
chr3	158378847	rs2291595	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr3	158384883	rs4680455	C	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.805;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.246;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr3	158388780	rs8455	T	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.206;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr3	158415402	rs10577754	TAGA	T	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr3	158422506	rs4680457	G	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.315;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:68,31:0.31:99
chr3	158428541	rs373731463	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:64,49:0.43:113
chr3	158428809	rs3830357	A	AAGGC	2266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.386;QD=12.25;ReadPosRankSum=-0.866;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:121,64:0.35:185
chr3	158450417	rs6441224	T	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr3	158520483	rs2713736	A	G	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr3	158522960	rs1381463	C	T	59.79	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	158537415	rs146160361	CTTTTT	C	7561.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	158537443	rs3765083	A	G	10813.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	158538056	rs4680469	T	C	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:110,79:0.42:189
chr3	158539294	rs1548092	G	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=-1.767;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr3	158539496	rs41272623	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr3	158787632	.	TTG	T	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.191;QD=6.71;ReadPosRankSum=-2.330;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	159557867	rs79601953	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr3	159584137	rs148163160	T	TA	709.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:80,46:0.37:126
chr3	159733600	rs589545	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.575;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr3	159733692	rs491966	T	C	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr3	159736893	rs2647930	T	C	2948.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:206,157:0.43:363
chr3	159737076	rs2647931	G	A	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:203,168:0.45:371
chr3	159738289	rs9968067	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:80,47:0.37:127
chr3	159738355	rs62270442	C	G	4270.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:146,214:0.59:360
chr3	159738453	rs6771983	C	T	2813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.088;QD=6.54;ReadPosRankSum=0.085;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:271,159:0.37:430
chr3	159744277	rs2936300	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	159744352	rs2279742	C	T	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	159744438	rs2914119	C	T	5975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.55;ReadPosRankSum=-0.155;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:112,153:0.58:265
chr3	159744440	rs2936301	C	T	5975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.72;ReadPosRankSum=-0.055;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:113,150:0.57:263
chr3	159744608	rs61743969	AC	GT	868.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr3	159976271	rs16831149	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:58,15:0.21:73
chr3	159997061	rs6778728	T	A	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:242,189:0.44:431
chr3	160021681	rs4680576	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:74,45:0.38:119
chr3	160102491	rs111466948	T	C	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.173;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-1.593;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:44,40:0.48:84
chr3	160119660	rs76695024	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr3	160130110	rs2305407	G	A	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-1.542;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:49,28:0.36:77
chr3	160142810	.	A	ATGTGTG	189.73	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr3	160148756	rs7631792	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr3	160156318	rs75343910	A	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:102,63:0.38:165
chr3	160220158	rs116475044	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.81;ReadPosRankSum=0.998;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr3	160227707	rs2305402	A	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-2.744;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr3	160233406	rs112603907	CT	C	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=6.092;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.821;QD=1.80;ReadPosRankSum=0.203;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:118,53:0.31:171
chr3	160245948	rs1551190	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	160245980	rs4679890	C	T	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	160282962	.	C	G	6264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DP=917;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=-0.724;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:555,353:0.39:908
chr3	160283126	rs4621370	A	C	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:138,111:0.45:249
chr3	160395093	rs1879797	A	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=1.402;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr3	160474540	.	CGT	C,CGTGT	925.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=164;set=Intersection	GT:AF:DP	1/2:0.50,0.31:72
chr3	160679422	rs7616249	T	C	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr3	160679744	rs7629001	A	T	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	160821929	rs7651087	T	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr3	160821969	rs7617204	A	G	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:99,129:0.57:228
chr3	160939732	rs148371722	A	AATCCCAAC	3429.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:5,65:0.93:70
chr3	160939746	.	CTTTTTTTTTTTTTTTTT	C	4155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.502;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=46.796;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=29.90;ReadPosRankSum=1.073;SOR=2.617;set=HC	GT:AD:AF:DP	0/1:15,124:0.89:139
chr3	160939776	rs28711573	T	A	3159.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:31,149:0.83:180
chr3	160955879	rs4350933	G	T	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=15.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.09;ReadPosRankSum=-1.092;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:9,44:0.83:53
chr3	160955882	rs200517975	CTT	C	1250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=10.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.74;ReadPosRankSum=-0.172;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:12,43:0.78:55
chr3	160964271	rs73026976	G	A	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=1.116;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:52,53:0.50:105
chr3	160965262	rs372150378	AT	A	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.491;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	160967354	rs4290817	G	A	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:48,75:0.61:123
chr3	160970437	rs6789388	G	A	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-0.319;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	161064193	rs339101	A	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr3	161090616	rs2054710	C	T	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:77,128:0.62:205
chr3	164714532	rs4855271	C	T	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	164733721	rs2290738	G	A	2123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=1.141;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:169,116:0.41:285
chr3	164751319	rs7611384	T	A	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.885;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.992;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr3	164758630	rs13099130	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr3	164764719	rs9838509	C	A	7002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.036;ClippingRankSum=0.000;DB;DP=980;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.008;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:582,389:0.40:971
chr3	164766807	rs200218470	T	TAA	652.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.755;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=9.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=-1.376;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr3	164766808	rs67477789	TC	T	652.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.304;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=10.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-0.675;SOR=0.030;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr3	164766816	rs9821196	C	A	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.292;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=10.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=-1.758;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr3	164766835	rs9841237	T	C	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr3	164772957	rs9290256	C	T	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:86,59:0.41:145
chr3	164773057	rs9290257	G	A	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:239,145:0.38:384
chr3	164776913	rs60170840	C	CAT	5688.73	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:257,159:0.38:416
chr3	164777677	rs9290259	T	G	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:169,133:0.44:302
chr3	164781368	rs11718901	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr3	164783165	rs9283633	T	C	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-0.879;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:90,48:0.35:138
chr3	164783252	.	AAT	A	322.75	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	164783262	rs375190554	T	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	164785196	rs76463353	C	T	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:82,121:0.60:203
chr3	164785338	rs9865476	G	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.40;ReadPosRankSum=-0.165;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	164786382	rs9758479	C	A	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr3	164786396	rs9754967	T	C	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,39:0.45:87
chr3	164786413	rs9756068	A	G	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:67,59:0.47:126
chr3	164786629	rs11313475	TA	T	803.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr3	165495400	rs2686409	G	A	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=0.319;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:88,59:0.40:147
chr3	165496622	rs2686411	A	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	165547569	rs28933390	C	A	5745.77	.	AC=1;AF=0.500;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	0/1:583,333:0.36:916
chr3	166960278	rs11923256	G	T	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.264;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:76,61:0.45:137
chr3	166966436	rs60512741	C	T	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:148,157:0.51:305
chr3	167000256	rs12638625	G	C	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:144,155:0.52:299
chr3	167006568	rs7625639	G	T	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:79,117:0.60:196
chr3	167006612	rs7625651	G	T	6427.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:235,303:0.56:538
chr3	167023738	rs13096767	G	C	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.561;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:63,27:0.30:90
chr3	167034814	rs13068132	T	C	4481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-0.318;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:322,242:0.43:564
chr3	167035501	rs4580553	G	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	167040185	rs12632964	A	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	167051726	rs10936530	A	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr3	167051769	rs11923054	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	167068256	rs4619784	T	A	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:162,86:0.35:248
chr3	167077691	rs4257551	T	A	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr3	167078544	rs9834845	T	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	167164352	rs2272140	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr3	167351418	rs9845725	T	C	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:27,71:0.72:98
chr3	167405084	.	T	C	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=1.851;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:42,83:0.66:125
chr3	167506937	rs33917740	C	G	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:54,90:0.62:144
chr3	167506967	rs34582040	A	G	2991.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:92,148:0.62:240
chr3	167508062	rs13090836	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	167510472	rs2229697	G	A	6921.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:213,337:0.61:550
chr3	167745400	rs74977752	G	A	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:59,106:0.64:165
chr3	167745703	rs9861339	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr3	167747949	rs6798995	C	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	167754573	rs6786410	A	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.597;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chr3	167754852	.	A	ATCTATGAATGCCCATTCATAGATGGGCATTTGT	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.081;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=17.240;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.245;QD=9.06;ReadPosRankSum=1.030;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr3	167758964	rs62273305	T	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr3	167762678	rs57702503	C	CA	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.757;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:81,47:0.37:128
chr3	167764820	rs77249029	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.275;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr3	168530046	.	C	CT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-0.000;QD=6.56;ReadPosRankSum=0.690;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	168538993	rs603638	A	G	7815.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr3	168542454	rs145528794	T	TCA	2697.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:35,104:0.75:139
chr3	168804447	rs116497170	G	C	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:233,114:0.33:347
chr3	168806987	rs1981745	G	A	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr3	168810874	rs17466625	C	T	8456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=0.676;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:236,405:0.63:641
chr3	168810980	rs12634348	C	T	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	168812871	rs116736168	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:136,58:0.30:194
chr3	168818560	rs9857376	C	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	168819788	rs9290358	A	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	168834055	.	C	A	2677.77	.	AC=1;AF=0.500;AN=2;DP=466;set=Intersection	GT:AD:AF:DP	0/1:300,149:0.33:449
chr3	168840571	rs3851380	A	T	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	168840607	rs3851381	C	T	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	168861536	rs116535717	C	A	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:358,179:0.33:537
chr3	168862931	rs72000698	AACACAC	A	753.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=41.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	168862973	.	CACACAGAG	C	463	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=2;HapScore=2;MGOF=53;MMLQ=26;MQ=58.74;NF=0;NR=30;PP=463;QD=15.5333333333;SC=CACACACACACACACAGAGAG;SbPval=1.0;Source=Platypus;TC=36;TCF=0;TCR=36;TR=30;WE=168862988;WS=168862961;set=Platypus	GT:AD:AF:DP	0/1:6,30:0.83:36
chr3	169098861	rs988398	C	T	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr3	169283921	rs3863106	C	T	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:39,78:0.67:117
chr3	169539812	rs61738871	C	G	3238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.426;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:351,191:0.35:542
chr3	169539990	rs61754874	G	A	9236.77	.	AC=1;AF=0.500;AN=2;DB;DP=1459;set=Intersection	GT:AD:AF:DP	0/1:909,514:0.36:1423
chr3	169540397	rs1920119	T	C	9685.77	.	AC=1;AF=0.500;AN=2;DB;DP=1783;set=Intersection	GT:AD:AF:DP	0/1:1181,590:0.33:1771
chr3	169540882	rs75794543	C	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr3	169550759	rs12486767	G	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:127,75:0.37:202
chr3	169557842	rs16854445	C	T	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-2.673;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:348,103:0.23:451
chr3	169558025	rs3732451	C	T	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:261,158:0.38:419
chr3	169566090	rs9290375	A	G	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:404,196:0.33:600
chr3	169569374	rs41273579	A	G	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-2.245;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:370,134:0.27:504
chr3	169569432	rs35923425	C	G	3605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.065;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:565,242:0.30:807
chr3	169574462	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.15;ReadPosRankSum=-0.260;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:501,85:0.15:586
chr3	169639050	rs61420799	C	T	6904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=1262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.709;QD=5.54;ReadPosRankSum=0.400;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:831,416:0.33:1247
chr3	169643757	rs1290671	G	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr3	169643955	rs1290670	C	T	6519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.581;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:194,317:0.62:511
chr3	169654095	rs76313862	A	G	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:97,169:0.64:266
chr3	169710363	rs2160898	G	T	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:96,145:0.60:241
chr3	169801658	rs6444895	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	169894680	rs1386333	G	A	2716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=1.788;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:87,130:0.60:217
chr3	169988364	rs35923524	C	CTT	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=10.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.360;SOR=0.143;set=HC	GT:AD:AF:DP	0/1:49,37:0.43:86
chr3	169998240	.	C	CT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.320;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:81,22:0.21:103
chr3	170013846	.	G	A	48	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=48;QD=20.6928031368;SC=GGTCAGTAGCGGTTTGGGAAA;SbPval=1.0;Source=Platypus;TC=13;TCF=2;TCR=11;TR=4;WE=170013854;WS=170013836;set=Platypus	GT:AD:AF:DP	1/0:9,4:0.31:13
chr3	170078232	rs3772173	C	T	10773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.014;ClippingRankSum=0.000;DB;DP=814;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=0.114;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:276,518:0.65:794
chr3	170099218	rs146524896	ATTAT	A	764.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr3	170105233	rs6786374	C	T	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:46,81:0.64:127
chr3	170105378	rs6786542	C	T	4757.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:180,235:0.57:415
chr3	170197954	rs989997	T	G	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	170198967	rs1861939	G	A	6493.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr3	170204206	rs74330815	T	A	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:73,116:0.61:189
chr3	170727701	.	G	GGT	890.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.800;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=9.748;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=7.75;ReadPosRankSum=2.349;SOR=1.311;set=HC	GT:AD:AF:DP	0/1:67,48:0.42:115
chr3	170732181	rs189047794	A	G	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.980;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=-0.055;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:73,40:0.35:113
chr3	170797535	rs138188690	C	CGT	1461.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr3	170801912	rs371989911	TA	T	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.670;QD=1.11;ReadPosRankSum=2.986;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:132,60:0.31:192
chr3	170825905	rs6444960	C	G	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr3	170843782	rs13074171	C	A	5355.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:133,258:0.66:391
chr3	170846676	.	C	CAAAAAA	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=15.554;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.071;QD=13.55;ReadPosRankSum=-3.730;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	170857140	rs7372183	G	T	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr3	170857159	rs371851610	GCACGCGCGCACACACACACACACA	G	1625.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:50,53:0.51:103
chr3	170857166	rs7637376	C	T	611.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.242;MLEAC=1;MLEAF=0.500;MQ=62.10;MQRankSum=-3.503;QD=7.28;ReadPosRankSum=-2.665;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:53,31:0.37:84
chr3	170857240	rs6444965	T	C	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:114,155:0.58:269
chr3	170858406	rs2292006	T	G	5256.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:150,236:0.61:386
chr3	170858467	rs67124134	C	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr3	170885097	rs2292005	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr3	170893070	rs12637875	G	A	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:271,140:0.34:411
chr3	170928797	rs6444972	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	171065010	rs3082367	G	GA	2548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.918;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:398,241:0.38:639
chr3	171065031	rs1389047	G	C	20610.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.07;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,605:1.00:605
chr3	171395280	rs62281875	T	C	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr3	171427332	.	A	T	2448.77	.	AC=1;AF=0.500;AN=2;DP=314;set=Intersection	GT:AD:AF:DP	0/1:175,127:0.42:302
chr3	171510480	.	C	T	4012.77	.	AC=1;AF=0.500;AN=2;DP=311;set=Intersection	GT:AD:AF:DP	0/1:108,190:0.64:298
chr3	172003831	rs67373503	CT	C	593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.386;QD=6.25;ReadPosRankSum=-0.570;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:39,56:0.59:95
chr3	172052897	rs71300460	G	GT	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=4.153;QD=1.89;ReadPosRankSum=-0.068;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:229,84:0.27:313
chr3	172065148	rs113522210	A	G	4318.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:136,209:0.61:345
chr3	172162829	rs482204	G	A	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.86;ReadPosRankSum=0.174;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr3	172162837	rs477251	T	C	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.17;ReadPosRankSum=0.604;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:17,36:0.68:53
chr3	172166033	rs495225	G	A	16122.77	.	AC=1;AF=0.500;AN=2;DB;DP=1120;set=Intersection	GT:AD:AF:DP	0/1:331,757:0.70:1088
chr3	172224303	rs1131532	A	G	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:98,120:0.55:218
chr3	172224769	rs111284464	GC	G	3153.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:56,83:0.60:139
chr3	172224771	rs17848019	T	A	3162.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:56,83:0.60:139
chr3	172227199	rs3815496	C	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr3	172365619	rs9865941	G	A	9340.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	172428508	rs7629698	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr3	172428782	rs2276805	T	C	5420.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:455,301:0.40:756
chr3	172480173	rs10654513	A	ATT	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr3	172480174	rs11313111	AC	A	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=-0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr3	172501443	rs7649589	A	C	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	172520818	rs7644191	G	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	172533459	.	A	G	2834.77	.	AC=1;AF=0.500;AN=2;DP=203;set=Intersection	GT:AD:AF:DP	0/1:59,136:0.70:195
chr3	172534428	rs10936738	C	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr3	172537850	rs35236458	T	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:63,46:0.42:109
chr3	172634025	rs141570329	T	TTG	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.322;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr3	173322248	rs3844523	T	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	173507395	rs4499633	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	173518043	.	CT	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.426;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.980;QD=0.56;ReadPosRankSum=2.053;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:254,62:0.20:316
chr3	173997153	rs7646919	G	A	13214.77	.	AC=1;AF=0.500;AN=2;DB;DP=991;set=Intersection	GT:AD:AF:DP	0/1:359,628:0.64:987
chr3	174581888	rs6445184	T	C	18316.77	.	AC=2;AF=1.00;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr3	174935828	rs34537026	C	T	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr3	174951756	rs4371530	T	C	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:212,118:0.36:330
chr3	175087275	rs9869507	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr3	175165079	rs6802937	C	T	21985.77	.	AC=2;AF=1.00;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	1/1:0,859:1.00:859
chr3	175165201	rs2161041	T	G	6597.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	175189406	rs35213579	CT	C	2252.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:7,121:0.95:128
chr3	175189417	rs79264590	G	A	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	175189447	rs9290555	G	A	10450.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr3	175205148	rs7646041	C	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	175205248	rs77907800	A	T	2804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=0.183;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:272,162:0.37:434
chr3	175345143	rs9866564	C	G	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	175373483	.	T	TAAATA	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=0.049;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr3	175473047	rs9826737	T	C	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	176750652	.	A	G	518.77	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr3	176765253	rs1201300	G	A	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	176768539	.	G	A	133.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr3	176771833	.	CGTGTGT	C,CGT	2013.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=109;set=Intersection	GT:AF:DP	1/2:0.46,0.51:81
chr3	176771857	.	TGTGTGC	T	950	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=1;MGOF=19;MMLQ=24;MQ=59.64;NF=1;NR=34;PP=950;QD=27.2285714286;SC=TGTGTGTGTGTGTGTGCGCGC;SbPval=0.63;Source=Platypus;TC=35;TCF=1;TCR=34;TR=35;WE=176771870;WS=176771847;set=Platypus	GT:AD:AF:DP	1/0:0,35:1.00:35
chr3	178542417	rs9857119	A	C	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.236;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:112,39:0.26:151
chr3	178545952	rs35616186	C	T	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:152,81:0.35:233
chr3	178546026	rs9831934	T	C	3051.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:395,186:0.32:581
chr3	178560581	rs6443583	A	C	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:341,174:0.34:515
chr3	178785549	rs6772028	G	A	4680.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	178917005	rs3729674	A	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr3	178921253	rs17550640	G	GTAAA	1976.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:123,50:0.29:173
chr3	178922222	rs3729676	G	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr3	178922274	rs2699896	C	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:117,53:0.31:170
chr3	178922430	rs3729679	A	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:63,32:0.34:95
chr3	178937346	rs41273619	T	C	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.965;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=52.34;MQRankSum=-0.831;QD=7.40;ReadPosRankSum=0.036;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:90,52:0.37:142
chr3	178938747	rs6443625	A	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-3.044;QD=3.45;ReadPosRankSum=1.275;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:98,32:0.25:130
chr3	178942431	rs2699889	C	G	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr3	178947325	rs3729692	A	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr3	178957783	rs3976507	C	T	34.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr3	178957969	rs6782557	G	A	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:78,35:0.31:113
chr3	178960607	rs1059691	A	G	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:97,44:0.31:141
chr3	178961038	rs139527128	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=46.01;MQRankSum=-1.979;QD=1.71;ReadPosRankSum=-0.662;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr3	178968634	rs7645550	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:256,115:0.31:371
chr3	178976591	rs56400023	T	A	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	178976777	rs11720871	C	T	13283.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr3	178976821	rs11720935	G	A	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	179047329	rs77046304	A	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr3	179050721	rs12491673	T	C	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:78,119:0.60:197
chr3	179076915	rs200503147	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.115;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr3	179085716	rs113028143	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.248;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	179085722	rs143669422	G	GTA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.80;ReadPosRankSum=-0.389;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr3	179085775	rs73043490	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	179092989	rs9865666	C	T	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	179095920	rs112479789	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr3	179096006	rs35435588	C	CA	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.582;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-1.536;SOR=1.991;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr3	179096508	rs7637065	C	G	8371.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.55;ReadPosRankSum=0.299;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:2,339:0.99:341
chr3	179103342	rs200984893	C	CT	340.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.04;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	179109735	rs2287209	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	179137273	rs1362650	A	G	7101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=0.879;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:207,345:0.62:552
chr3	179291308	rs71907893	CT	C	929.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.069;QD=2.59;ReadPosRankSum=2.374;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:260,99:0.28:359
chr3	179294509	rs34630517	T	A	4610.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:148,219:0.60:367
chr3	179298999	rs1132429	C	T	3993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=795;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=1.115;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:529,245:0.32:774
chr3	179320386	rs371595016	CG	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.703;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr3	179399570	rs13080037	C	T	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=1.458;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:178,94:0.35:272
chr3	179448066	rs11309768	AT	A	1618.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:59,106:0.64:165
chr3	179448383	rs3213761	C	T	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	179463076	rs58527921	A	G	6872.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	179463081	rs59131484	G	A	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.48;SOR=1.155;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	179469995	rs2239639	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	179472674	rs2287240	C	T	14714.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr3	179481738	.	CA	C	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.360;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:78,50:0.39:128
chr3	179481971	rs3222346	CTGTG	C,CTG	4824.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=329;set=Intersection	GT:AF:DP	1/2:0.13,0.78:206
chr3	179527459	rs111620765	G	GA	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.864;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr3	179592053	rs1609981	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	179592240	rs2339914	C	T	3322.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:114,161:0.59:275
chr3	179593072	rs55664665	T	A	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:39,60:0.61:99
chr3	179593352	rs2302743	C	T	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:101,181:0.64:282
chr3	179597979	rs13067789	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr3	179615846	.	G	GT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.360;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr3	179689264	rs3774256	T	C	2196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=1.309;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:187,120:0.39:307
chr3	179689365	rs3774257	C	T	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:245,136:0.36:381
chr3	179691094	rs12054457	G	A	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:440,206:0.32:646
chr3	180322248	.	C	CT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.450;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr3	180679156	rs7428473	G	A	382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.27;MQRankSum=0.000;QD=20.15;ReadPosRankSum=0.000;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr3	180688171	.	AAT	A	129	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5209;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=129;QD=66.0;SC=AGGGAAGAGAAATATATATAT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=180688180;WS=180688161;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr3	182546017	rs9814205	C	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	182563088	rs4859249	C	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:41,9:0.18:50
chr3	182575631	rs661774	G	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	182576923	rs645597	T	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	182583990	rs2272117	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr3	182587126	rs73050693	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.809;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr3	182590354	rs771156	C	T	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	182598863	rs796406	A	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	182603666	rs11392709	A	AT	185.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr3	182603693	rs6784314	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr3	182614493	rs4859142	T	C	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-1.152;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:272,124:0.31:396
chr3	182681740	rs4859146	C	T	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	182681853	rs4859147	T	C	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	182735182	rs6786878	C	A	8999.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr3	182755209	rs2270968	T	G	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr3	182757084	rs2270967	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	182790249	rs7622479	G	A	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	182804385	rs6806083	G	A	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	182810144	rs3732604	T	G	3736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=-0.559;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:103,182:0.64:285
chr3	182817328	rs937652	C	G	25370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=1887;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=0.710;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:676,1190:0.64:1866
chr3	182853670	rs482912	T	C	11761.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr3	182858287	rs522235	C	T	24986.77	.	AC=2;AF=1.00;AN=2;DB;DP=996;set=Intersection	GT:AD:AF:DP	1/1:0,974:1.00:974
chr3	182858461	rs831256	A	G	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	182870082	rs682396	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	182870436	rs514636	G	A	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	182871464	rs500288	A	G	3092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.178;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:423,193:0.31:616
chr3	182871962	rs653316	C	T	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr3	182880629	rs602762	A	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	182913092	rs577136	T	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	182925404	rs6804951	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	182946002	rs6803121	A	G	13565.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr3	182947413	rs1122143	C	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr3	182987515	rs3811732	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr3	183368216	rs3755648	A	T	4727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=969;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-0.247;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:659,304:0.32:963
chr3	183368891	rs2293031	C	T	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	0/1:532,305:0.36:837
chr3	183439972	rs3841649	A	AG	4580.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	183474368	rs201314461	C	T	13515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=1092;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=3.990;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:431,656:0.60:1087
chr3	183476685	rs262993	G	A	21813.77	.	AC=2;AF=1.00;AN=2;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,859:1.00:859
chr3	183480108	rs3830564	ATGT	A	1845.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	183491340	rs262961	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	183491720	rs262960	T	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	183493743	rs146705467	CGGA	C	5131.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:8,230:0.97:238
chr3	183493991	rs2606220	G	A	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	183510782	rs263022	T	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	183521133	rs263042	A	G	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	183521659	rs375113583	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=10.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.456;SOR=0.031;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	183524193	rs263034	T	C	11559.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr3	183524349	rs263033	C	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	183524379	rs263032	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	183524948	rs263031	T	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	183528442	rs263024	C	T	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr3	183535094	rs2582091	C	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	183535763	rs897604	A	G	7365.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr3	183536063	rs894000	T	C	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	183543291	rs263006	G	A	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	183558402	rs3732581	C	G	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=25.75;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	183558497	rs34558001	C	CT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.025;QD=1.98;ReadPosRankSum=-0.116;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr3	183560195	rs13091	A	G	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.42;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	183560292	rs7652031	A	T	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr3	183562276	rs3811725	A	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	183604723	rs1829515	A	G	13094.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=25.58;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,512:1.00:512
chr3	183604801	rs4420923	G	T	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr3	183643585	rs56348509	T	C	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	183663833	rs2292998	T	C	10018.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr3	183669396	rs4148586	C	T	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	183669932	.	CTT	C	461.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-2.277;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr3	183679532	rs6443924	A	G	8368.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	183679574	.	A	AT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.752;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=11.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=1.881;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:88,20:0.19:108
chr3	183685534	rs939336	A	G	20206.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	1/1:2,807:1.00:809
chr3	183695508	rs116583553	G	A	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:264,152:0.37:416
chr3	183695545	rs200446876	A	AT	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.783;QD=1.22;ReadPosRankSum=1.305;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:149,38:0.20:187
chr3	183696402	rs1132776	A	G	8934.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr3	183699516	rs7636910	T	C	4591.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	183699781	rs2872247	A	C	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	183700211	rs2293001	C	T	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	183706630	rs6443926	A	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	183749731	rs939334	T	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	183754029	rs6792482	T	C	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	183754294	rs6443930	G	C	8193.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr3	183755822	rs1000952	G	A	8512.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr3	183756426	rs6799766	T	C	22860.77	.	AC=2;AF=1.00;AN=2;DB;DP=896;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.01;QD=25.54;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,895:1.00:895
chr3	183756702	rs6789754	G	A	40205.77	.	AC=2;AF=1.00;AN=2;DB;DP=1550;set=Intersection	GT:AD:AF:DP	1/1:0,1541:1.00:1541
chr3	183756742	rs55674402	C	T	49933.77	.	AC=2;AF=1.00;AN=2;DB;DP=1930;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.37;QD=26.02;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,1919:1.00:1919
chr3	183756780	rs6765152	A	C	37146.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=1420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;MQRankSum=4.317;QD=26.31;ReadPosRankSum=0.345;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:2,1410:1.00:1412
chr3	183756808	rs6789882	G	A	26810.77	.	AC=2;AF=1.00;AN=2;DB;DP=1029;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=26.39;SOR=1.070;set=HC	GT:AD:AF:DP	1/1:0,1016:1.00:1016
chr3	183756836	rs11274156	A	AT	19580.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.70;QD=44.20;SOR=1.946;set=HC	GT:AD:AF:DP	1/1:0,443:1.00:443
chr3	183756837	rs66883074	G	GTCAGTCCAAATT	9435.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=3.029;MLEAC=2;MLEAF=1.000;MQ=60.70;MQRankSum=-0.083;QD=28.59;ReadPosRankSum=-1.707;SOR=1.938;set=HC	GT:AD:AF:DP	1/1:2,328:0.99:330
chr3	183756897	rs55953689	A	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	183818416	rs7627615	G	A	6138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=938;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=1.584;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:582,354:0.38:936
chr3	183818511	rs55683908	A	G	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:56,108:0.66:164
chr3	183819155	rs7432211	T	C	7902.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr3	183823576	rs4912524	T	C	8592.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:1,316:1.00:317
chr3	183823863	rs150341032	G	GAAGA	9124.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	183856549	rs6787322	A	G	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	183857809	.	CA	C	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=0.000;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:81,33:0.29:114
chr3	183861750	rs843357	A	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.740;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr3	183884550	rs73185720	T	C	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:208,123:0.37:331
chr3	183896641	rs2231216	T	C	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.995;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:165,43:0.21:208
chr3	183899832	rs8478	C	T	3621.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:345,207:0.38:552
chr3	183900729	rs843365	T	C	2624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=0.993;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:310,159:0.34:469
chr3	183900836	rs843364	G	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr3	183901281	rs2231224	G	A	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:188,109:0.37:297
chr3	183903937	rs60293594	G	GC	4610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.018;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=33.112;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.174;QD=13.44;ReadPosRankSum=-3.495;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:198,145:0.42:343
chr3	183904226	rs56351888	C	T	1423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.898;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-0.462;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:91,61:0.40:152
chr3	183904232	rs1709624	T	A	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	183904520	rs55940723	T	C	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:363,208:0.36:571
chr3	183906515	rs843345	T	C	1757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=-1.080;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:240,111:0.32:351
chr3	183907032	rs843344	G	C	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:240,115:0.32:355
chr3	183908761	rs7614381	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.174;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr3	183909143	rs28673709	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr3	183948663	rs1687225	G	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr3	183951135	rs729377	C	T	14763.77	.	AC=1;AF=0.500;AN=2;DB;DP=1014;set=Intersection	GT:AD:AF:DP	0/1:323,670:0.67:993
chr3	183951431	rs902417	C	T	3330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=2.010;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:103,155:0.60:258
chr3	183953972	rs1709657	G	A	4026.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:114,186:0.62:300
chr3	183955109	rs843334	C	T	13852.77	.	AC=1;AF=0.500;AN=2;DB;DP=995;set=Intersection	GT:AD:AF:DP	0/1:345,640:0.65:985
chr3	183957095	rs843333	A	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=-1.610;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	183957467	rs843332	G	T	9466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-1.281;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:372,457:0.55:829
chr3	183959959	rs79886161	C	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:94,49:0.34:143
chr3	183959961	rs2668195	A	G	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:49,93:0.65:142
chr3	183960252	rs706584	A	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr3	183963381	rs2233463	T	C	10085.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:243,476:0.66:719
chr3	183975365	rs7633387	C	T	19742.77	.	AC=2;AF=1.00;AN=2;DB;DP=778;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,761:1.00:761
chr3	183976108	rs902415	T	C	7741.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:184,354:0.66:538
chr3	183978846	rs843352	G	A	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr3	183994536	rs843371	A	G	15131.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr3	183995341	rs1001817	C	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:92,45:0.33:137
chr3	183995854	rs2272471	G	A	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:259,120:0.32:379
chr3	183996068	rs3752904	C	T	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:378,172:0.31:550
chr3	183996213	rs843372	C	T	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	183996484	rs140658066	CTTTCTTCT	C	919.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.745;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:46,26:0.36:72
chr3	183996511	rs1387976	C	T	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.61;ReadPosRankSum=-0.160;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr3	184003161	rs1687231	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr3	184003194	rs1687230	C	T	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	184010048	rs3914188	G	C	27105.77	.	AC=2;AF=1.00;AN=2;DB;DP=1080;set=Intersection	GT:AD:AF:DP	1/1:0,1023:1.00:1023
chr3	184020100	rs71185698	C	CA	704.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	184033408	rs73187631	A	T	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:325,190:0.37:515
chr3	184037533	rs13319149	A	G	24917.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.146;ClippingRankSum=0.000;DB;DP=983;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=0.136;SOR=0.130;set=HC	GT:AD:AF:DP	1/1:2,974:1.00:976
chr3	184038969	rs4912537	C	T	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr3	184039666	rs2178403	A	G	24067.77	.	AC=2;AF=1.00;AN=2;DB;DP=910;set=Intersection	GT:AD:AF:DP	1/1:0,881:1.00:881
chr3	184045799	rs939317	A	G	13351.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr3	184046355	rs1879244	C	T	5898.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	184046470	rs2230571	C	T	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:344,185:0.35:529
chr3	184059474	.	G	T	3360.77	.	AC=1;AF=0.500;AN=2;DP=296;set=Intersection	GT:AD:AF:DP	0/1:127,151:0.54:278
chr3	184062776	rs9839000	A	G	2543.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:259,140:0.35:399
chr3	184063382	rs73187642	C	T	6785.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:233,333:0.59:566
chr3	184070675	rs3749223	A	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	184071017	rs41266265	G	A	11878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=1081;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-0.685;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:727,343:0.32:1070
chr3	184071019	rs11920716	T	C	11879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DB;DP=1046;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.299;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:706,330:0.32:1036
chr3	184071063	rs9820367	G	C	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:453,217:0.32:670
chr3	184072459	rs73189624	G	A	4790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.377;ClippingRankSum=0.000;DB;DP=735;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.325;QD=6.64;ReadPosRankSum=1.347;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:460,261:0.36:721
chr3	184072632	rs3749222	G	C	5749.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:127,269:0.68:396
chr3	184073551	rs3749221	C	T	9161.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:319,448:0.58:767
chr3	184075958	rs41266271	C	T	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	0/1:454,221:0.33:675
chr3	184081371	rs41559914	G	T	7408.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:244,350:0.59:594
chr3	184082931	rs11556518	T	C	6219.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:194,295:0.60:489
chr3	184090266	rs6141	C	T	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:93,56:0.38:149
chr3	184091149	rs6142	G	T	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:170,111:0.40:281
chr3	184093527	rs2280740	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr3	184094183	rs956732	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr3	184098193	rs1920128	A	C	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.986;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=1.664;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:106,60:0.36:166
chr3	184098647	rs885650	C	T	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:236,123:0.34:359
chr3	184099342	rs3749228	G	C	22832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=1750;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-0.123;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:613,1102:0.64:1715
chr3	184099378	rs35929225	C	A	8153.77	.	AC=1;AF=0.500;AN=2;DB;DP=1176;set=Intersection	GT:AD:AF:DP	0/1:716,442:0.38:1158
chr3	184100961	rs3833587	G	GT	951.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:116,53:0.31:169
chr3	184106025	.	GTCCA	G	303	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=2;MGOF=4;MMLQ=23;MQ=56.06;NF=0;NR=6;PP=303;QD=51.3333333333;SC=CCATCCATCCGTCCATCCATC;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=6;WE=184106036;WS=184106015;set=Platypus	GT:AD:AF:DP	1/1:8,6:0.43:14
chr3	184106217	rs1881972	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr3	184144585	rs62287529	A	G	30884.77	.	AC=2;AF=1.00;AN=2;DB;DP=1219;set=Intersection	GT:AD:AF:DP	1/1:0,1202:1.00:1202
chr3	184290348	rs9862375	G	A	12704.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr3	184293564	rs7640497	C	T	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	184293769	rs7652597	T	C	38832.77	.	AC=2;AF=1.00;AN=2;DB;DP=1512;set=Intersection	GT:AD:AF:DP	1/1:0,1481:1.00:1481
chr3	184295008	rs7644069	C	A	7645.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:1,298:1.00:299
chr3	184295316	rs7644377	C	T	16820.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,653:1.00:653
chr3	184295828	rs4072650	C	A	21857.77	.	AC=2;AF=1.00;AN=2;DB;DP=835;set=Intersection	GT:AD:AF:DP	1/1:0,829:1.00:829
chr3	184295921	rs4072651	C	T	7395.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=1.554;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	184295921	.	CCA	TCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=4;HapScore=1;MGOF=14;MMLQ=23;MQ=60.0;NF=27;NR=72;PP=2947;QD=20;SC=CCTCCTGGGGCCAGCCGTTGC;SbPval=0.54;Source=Platypus;TC=101;TCF=28;TCR=73;TR=99;WE=184295931;WS=184295911;set=Platypus	GT:AD:AF:DP	1/1:2,99:0.98:101
chr3	184295923	rs4072652	A	G	7395.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	184297792	rs3935434	A	G	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	184298663	rs11719912	G	A	25116.77	.	AC=2;AF=1.00;AN=2;DB;DP=976;set=Intersection	GT:AD:AF:DP	1/1:0,949:1.00:949
chr3	184299167	rs1138510	T	C	20802.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	1/1:0,756:1.00:756
chr3	184402122	rs9290796	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr3	184428903	rs9872799	T	G	22119.77	.	AC=2;AF=1.00;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	1/1:0,837:1.00:837
chr3	184429133	rs10656187	A	ATCC	27510.73	.	AC=2;AF=1.00;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	1/1:19,627:0.97:646
chr3	184429414	rs10937187	C	A	19748.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:1,737:1.00:738
chr3	184542693	rs71298576	A	AT	700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.764;QD=3.09;ReadPosRankSum=2.088;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:143,84:0.37:227
chr3	184550501	rs9830734	A	G	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-1.207;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:62,39:0.39:101
chr3	184560969	rs16859344	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr3	184561140	rs11384502	G	GA	126.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,13:0.25:53
chr3	184567039	rs2305240	C	A	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr3	184573555	rs6443999	C	T	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:405,218:0.35:623
chr3	184573633	rs375013122	G	T	3796.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:93,182:0.66:275
chr3	184577917	rs7340698	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr3	184580917	rs3733165	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr3	184588420	rs2305239	A	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr3	184616504	rs9845800	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr3	184631103	rs9821657	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.74;ReadPosRankSum=0.054;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr3	184633247	rs4686879	A	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:32,69:0.68:101
chr3	184642587	rs11391596	A	AT	1438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.765;QD=9.72;ReadPosRankSum=0.775;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:50,98:0.66:148
chr3	184647413	rs4643688	T	C	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	184654166	rs6444004	A	G	6065.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	184658058	rs142586532	T	TTATA	411.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	184675095	rs3732934	C	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr3	184675147	rs3832240	CTTTTA	C	2971.73	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:162,84:0.34:246
chr3	184675359	rs4501092	T	C	6847.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	184682214	rs6799328	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr3	184684313	rs4470487	G	A	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	184700356	rs4572747	A	C	14221.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr3	184700426	rs11555405	C	T	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:425,239:0.36:664
chr3	184714014	rs9860814	C	T	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	184717703	rs2291737	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	184766148	rs3821748	A	G	1620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-1.683;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:216,103:0.32:319
chr3	184766186	rs3821749	A	C	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:304,156:0.34:460
chr3	184766249	rs6779564	TC	CT	5789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=0.640;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:301,162:0.35:463
chr3	184766392	rs3821751	G	A	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=-0.141;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:155,106:0.41:261
chr3	184769911	rs2271257	C	T	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr3	184801494	rs9845482	G	A	203.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	184907503	.	CT	C	631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.624;QD=4.58;ReadPosRankSum=-0.049;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:54,84:0.61:138
chr3	184935807	rs35531967	A	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:56,88:0.61:144
chr3	184971560	.	A	AAAAAAG	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=2.953;QD=7.23;ReadPosRankSum=0.930;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr3	185046909	rs34308085	AT	A	4340.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	185046975	rs9863304	T	C	12267.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr3	185155430	rs113427759	C	CT	1241.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.538;QD=12.80;ReadPosRankSum=-0.343;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:20,77:0.79:97
chr3	185212593	rs6798873	T	C	11156.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr3	185229464	rs61730237	T	C	9793.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr3	185232169	rs1837882	G	A	5318.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	185236964	rs144288709	G	A	2600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-0.570;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:71,128:0.64:199
chr3	185347363	rs34843707	C	CA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-1.907;QD=2.09;ReadPosRankSum=1.516;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr3	185635685	rs16860328	A	G	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.366;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:143,73:0.34:216
chr3	185655454	rs1862904	A	G	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.725;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-0.183;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:58,44:0.43:102
chr3	185766711	rs79060173	G	A	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:58,118:0.67:176
chr3	185879296	rs13073156	T	C	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	185879509	rs150593644	G	C	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:72,137:0.66:209
chr3	185882643	rs4686741	C	G	2953.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:198,155:0.44:353
chr3	185905876	rs13087397	G	A	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	185960192	rs6799929	A	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	185960414	rs12489063	G	A	15962.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr3	185982955	rs3815620	G	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr3	185982972	rs3815619	T	C	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:42,90:0.68:132
chr3	185990096	rs2193587	C	T	18774.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:4,765:0.99:769
chr3	186006566	rs710443	T	C	30851.77	.	AC=2;AF=1.00;AN=2;DB;DP=1204;set=Intersection	GT:AD:AF:DP	1/1:0,1190:1.00:1190
chr3	186015283	rs3819860	A	G	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:80,100:0.56:180
chr3	186015303	rs3819859	A	G	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:91,107:0.54:198
chr3	186015315	rs3819858	T	C	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:78,97:0.55:175
chr3	186015438	rs3819857	C	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr3	186276393	rs9854418	C	T	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-0.655;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:79,47:0.37:126
chr3	186287777	rs2889755	T	C	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	186288565	rs3806714	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	186290127	rs6148229	CATTT	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.512;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:46,6:0.12:52
chr3	186293820	rs2280390	T	G	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	186295417	rs11386781	A	AT	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.161;QD=4.04;ReadPosRankSum=1.211;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:43,26:0.38:69
chr3	186302391	.	A	AGTGTGTGTGTGT	2960.73	.	AC=2;AF=1.00;AN=2;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.23;QD=37.96;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	186338425	rs1071592	A	C	30610.77	.	AC=2;AF=1.00;AN=2;DB;DP=1188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,1168:1.00:1168
chr3	186386664	rs5855108	T	TA,TAA	687.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	1/1:1.00:33
chr3	186388028	rs2555515	T	C	32.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.93;ReadPosRankSum=0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr3	186393073	rs370566711	GGT	G	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.614;QD=5.51;ReadPosRankSum=1.047;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr3	186393095	rs2378122	T	A	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.897;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.914;QD=2.43;ReadPosRankSum=0.416;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:97,21:0.18:118
chr3	186393095	.	TGTGA	AGAGA	661	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=21;MMLQ=14;MQ=59.53;NF=3,0;NR=12,42;PP=661,623;QD=47.6311916575;SC=TGTGTGTGTGTGTGAGAGAGA;SbPval=0.92;Source=Platypus;TC=100;TCF=35;TCR=65;TR=15,42;WE=186393108;WS=186393083;set=Platypus	GT:AD:AF:DP	0/1:85,15:0.15:100
chr3	186393095	.	TGTGA	T	661	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=21;MMLQ=14;MQ=59.53;NF=3,0;NR=12,42;PP=661,623;QD=47.6311916575;SC=TGTGTGTGTGTGTGAGAGAGA;SbPval=0.92;Source=Platypus;TC=100;TCF=35;TCR=65;TR=15,42;WE=186393108;WS=186393083;set=Platypus	GT:AD:AF:DP	0/1:25,42:0.63:67
chr3	186393097	rs7428891	T	A	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=4.469;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.049;QD=8.71;ReadPosRankSum=1.112;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:60,32:0.35:92
chr3	186395180	rs7629680	T	C	73053.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.048;ClippingRankSum=0.000;DB;DP=3071;ExcessHet=3.0103;FS=1.308;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=24.30;ReadPosRankSum=16.072;SOR=0.544;set=HC	GT:AD:AF:DP	1/1:146,2860:0.95:3006
chr3	186435370	rs1050274	G	A	8548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=2.053;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:239,419:0.64:658
chr3	186438037	rs2304452	T	C	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:50,78:0.61:128
chr3	186440243	rs1469859	G	A	2642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-1.871;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:286,157:0.35:443
chr3	186442833	rs1656921	G	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:86,35:0.29:121
chr3	186443018	rs1656922	T	C	3078.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:327,180:0.36:507
chr3	186445052	rs2304456	T	G	4478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=1.054;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:118,217:0.65:335
chr3	186445186	rs3841557	G	GA	4168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.81;ReadPosRankSum=3.087;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:51,117:0.70:168
chr3	186445237	rs5030025	A	C	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=-2.533;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:14,40:0.74:54
chr3	186449582	rs1648698	G	C	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr3	186459927	rs710446	T	C	7334.77	.	AC=1;AF=0.500;AN=2;DB;DP=1242;set=Intersection	GT:AD:AF:DP	0/1:800,416:0.34:1216
chr3	186461349	rs5030095	G	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	186504148	rs266718	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr3	186505706	rs12630327	A	C	4615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-2.384;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:80,207:0.72:287
chr3	186507757	rs1047148	G	A	11436.77	.	AC=1;AF=0.500;AN=2;DB;DP=892;set=Intersection	GT:AD:AF:DP	0/1:337,549:0.62:886
chr3	186508247	rs2234751	T	TA	1419.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:92,51:0.36:143
chr3	186509258	.	C	CA	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-1.079;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:102,36:0.26:138
chr3	186570873	rs114155159	T	A	6492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-1.472;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:443,188:0.30:631
chr3	186570892	rs2241766	T	G	7179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=0.741;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:566,244:0.30:810
chr3	186571123	rs1501299	G	T	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr3	186571196	rs2241767	A	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr3	186571814	rs3774262	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.466;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr3	186791795	rs9821439	A	G	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr3	186917751	rs6764714	C	G	15725.77	.	AC=1;AF=0.500;AN=2;DB;DP=1127;set=Intersection	GT:AD:AF:DP	0/1:372,740:0.67:1112
chr3	186938956	rs3733001	C	T	8795.77	.	AC=1;AF=0.500;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	0/1:313,430:0.58:743
chr3	186947410	rs850318	C	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	186954285	rs710452	A	G	48997.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=1868;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=0.714;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:2,1840:1.00:1842
chr3	186961478	rs710460	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	186965268	rs3774275	A	G	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr3	186967942	rs2302818	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr3	186969634	rs698092	A	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:33,58:0.64:91
chr3	187003495	rs698105	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	187086081	rs5855133	TCAGA	T	3225.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	187088656	rs1047584	C	T	6572.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:174,314:0.64:488
chr3	187088812	rs3821812	C	T	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:318,121:0.28:439
chr3	187088903	rs1533595	C	A	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:354,164:0.32:518
chr3	187088923	rs35224605	G	A	7356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=0.324;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:163,341:0.68:504
chr3	187088926	rs1533594	G	A	19469.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.71;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,503:1.00:503
chr3	187089031	rs1003995	C	A	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:307,154:0.33:461
chr3	187416666	rs11927120	C	T	4821.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:120,219:0.65:339
chr3	187419661	rs113681515	G	GCCTGCC	8309.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	187419816	rs61754877	T	C	10038.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:306,483:0.61:789
chr3	187420445	rs4389470	C	T	6697.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	187433354	rs73045324	A	T	7498.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr3	187442662	rs199744143	G	GCTCCACCTCCTTCCCTGCC	13231.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=3.892;MLEAC=2;MLEAF=1.000;MQ=66.15;MQRankSum=-2.483;QD=30.84;ReadPosRankSum=3.636;SOR=1.602;set=HC	GT:AD:AF:DP	1/1:6,423:0.99:429
chr3	187447032	rs1056932	G	A	22136.77	.	AC=2;AF=1.00;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	1/1:0,846:1.00:846
chr3	187450128	rs4417855	C	T	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	187451609	rs1880101	A	G	7012.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	188202550	rs2067078	A	T	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	188202582	rs1559814	G	T	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	188242666	.	CCCTTCCTTCCTTCCGTCCGT	C	53.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.424;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:43,5:0.10:48
chr3	188242669	rs200398269	TTCCTTCCTTCCGTCCG	T	1330.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.72;ReadPosRankSum=3.899;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:12,36:0.75:48
chr3	188242701	rs138209867	T	G	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.455;QD=29.36;ReadPosRankSum=1.686;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr3	188242705	rs144299808	T	G	7033.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=-0.090;QD=42.37;ReadPosRankSum=2.788;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:3,163:0.98:166
chr3	188242709	rs375581769	T	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.400;QD=0.92;ReadPosRankSum=1.410;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:45,5:0.10:50
chr3	188326926	rs148971918	C	CT	1677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.931;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:214,111:0.34:325
chr3	188327461	rs1059380	C	T	12663.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr3	188478197	rs3841956	G	GGTGTGT	1253.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=56.99;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr3	188478227	rs9844848	T	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.70;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	188478235	rs9844854	T	C	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	188590358	rs4687001	C	T	13832.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr3	188590446	rs1136644	A	G	4351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=797;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.700;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:528,265:0.33:793
chr3	188933213	rs3821734	C	T	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:56,109:0.66:165
chr3	188937307	rs5855244	G	GA	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=1.622;SOR=1.477;set=HC	GT:AD:AF:DP	0/1:19,44:0.70:63
chr3	189028117	rs11425320	A	AT	897.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.028;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:35,60:0.63:95
chr3	189028413	rs202013476	CAAAATAAAAT	C	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	189033292	rs6773831	C	G	9365.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:284,453:0.61:737
chr3	189455681	rs34875865	T	C	4256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=1.078;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:137,212:0.61:349
chr3	189547735	rs75715827	T	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-1.904;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr3	189582241	rs17514215	T	G	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr3	189582249	rs2276792	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr3	189584704	rs71310840	C	T	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:82,154:0.65:236
chr3	189585852	rs7653848	C	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:178,85:0.32:263
chr3	189587091	rs6789961	A	G	5417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-2.403;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:605,321:0.35:926
chr3	189587274	rs6790167	A	G	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	189590824	rs9840359	G	C	4862.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.97;SOR=1.354;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	189590824	.	GG	CA,CG	1057	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=26;MQ=60.0;NF=6,30;NR=17,65;PP=258,1057;QD=13.5420815157;SC=GCATGAGTGAGGGTGACTTTA;SbPval=0.75;Source=Platypus;TC=95;TCF=30;TCR=65;TR=23,95;WE=189590833;WS=189590814;set=Platypus	GT:AF:DP	0/1:0.24:95
chr3	189590825	rs9840360	G	A	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-1.018;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:102,46:0.31:148
chr3	189604149	rs1554131	T	G	19046.77	.	AC=2;AF=1.00;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	1/1:0,753:1.00:753
chr3	189604160	rs1345186	T	C	22471.77	.	AC=2;AF=1.00;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	1/1:0,865:1.00:865
chr3	189625218	rs1515488	G	A	4042.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:457,243:0.35:700
chr3	189688569	rs3732920	C	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr3	189689904	rs710543	A	G	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	189690816	rs71674435	G	GA	884.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:69,62:0.47:131
chr3	189690861	rs710545	T	A	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	189691499	rs1815171	G	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=1.758;QD=8.91;ReadPosRankSum=0.000;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr3	189692565	rs1985690	G	A	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:229,123:0.35:352
chr3	189702200	rs710558	T	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	189702395	rs11311050	TA	T	2483.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.298;QD=18.13;ReadPosRankSum=2.173;SOR=0.563;set=HC	GT:AD:AF:DP	1/1:3,134:0.98:137
chr3	189705268	rs11354217	TA	T	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.462;QD=1.56;ReadPosRankSum=0.852;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:126,56:0.31:182
chr3	189705542	rs3114672	A	G	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	189712010	rs1719600	G	A	5366.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:199,268:0.57:467
chr3	189712089	rs1719599	G	A	7829.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.79;QD=44.49;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	189712089	.	GG	AA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=1;MGOF=11;MMLQ=26;MQ=60.9;NF=43;NR=65;PP=2947;QD=20;SC=TGAAACAGACGGGAAAAAACA;SbPval=0.52;Source=Platypus;TC=110;TCF=44;TCR=66;TR=108;WE=189712102;WS=189712079;set=Platypus	GT:AD:AF:DP	1/1:2,108:0.98:110
chr3	189712090	rs1719598	G	A	7829.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=45.00;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	189712094	rs139834656	A	AAAAC	4024.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:3,97:0.97:100
chr3	189713205	rs9821880	T	C	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:347,165:0.32:512
chr3	189713345	.	G	GGT	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.31;ReadPosRankSum=0.230;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr3	189837993	rs710596	G	A	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:115,77:0.40:192
chr3	190030680	rs9869263	A	G	16954.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	1/1:2,671:1.00:673
chr3	190040008	rs17429833	C	G	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:108,65:0.38:173
chr3	190157898	rs6767754	G	A	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	190158168	rs35161724	G	C	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	190167533	rs10513852	C	T	13763.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr3	190333162	rs35429399	TG	T	1603.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:136,71:0.34:207
chr3	190338039	rs11368884	C	CT	218.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-1.511;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr3	190341241	rs4687160	C	A	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:214,107:0.33:321
chr3	190341292	rs4687161	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,28:0.31:91
chr3	190345098	rs34908328	GT	G	2566.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=4.077;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.935;QD=15.94;ReadPosRankSum=0.797;SOR=1.441;set=HC	GT:AD:AF:DP	1/1:15,146:0.91:161
chr3	190347391	rs7611887	C	T	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	190361905	rs75317965	G	C	229.88	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr3	190577568	rs189295784	A	G	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:76,116:0.60:192
chr3	190578566	rs13075089	A	G	3192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-1.883;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:145,157:0.52:302
chr3	190578743	rs4577513	T	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.449;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr3	190580150	rs10630111	A	AG	921.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.48;ReadPosRankSum=0.647;SOR=1.946;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr3	190580151	.	A	AGAC	921.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.95;ReadPosRankSum=2.909;SOR=1.811;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr3	190580209	rs145134107	A	AAG	1608.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=3.059;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=2.647;QD=10.58;ReadPosRankSum=-0.606;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:70,82:0.54:152
chr3	190594309	rs9880320	G	A	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:207,105:0.34:312
chr3	190594334	rs9842242	A	G	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=2.546;MLEAC=1;MLEAF=0.500;MQ=53.79;MQRankSum=-2.279;QD=6.09;ReadPosRankSum=0.115;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:202,111:0.35:313
chr3	190594452	rs9842514	A	C	2743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-6.107;QD=11.15;ReadPosRankSum=-1.959;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:165,81:0.33:246
chr3	190594454	rs9880346	C	T	2743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-5.583;QD=11.38;ReadPosRankSum=-1.489;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:163,78:0.32:241
chr3	190936482	rs9290979	A	C	11696.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:1,455:1.00:456
chr3	190967718	rs34754526	TA	T	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr3	190980797	rs7644510	A	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	190986110	rs10804933	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	190986388	rs6794154	C	T	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	190991384	rs9857697	G	A	8920.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:192,421:0.69:613
chr3	190991439	rs9877400	T	C	5446.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:113,242:0.68:355
chr3	190995847	rs3214008	T	C	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=1.418;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:63,38:0.38:101
chr3	190999872	rs6444534	G	A	2408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.142;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:311,148:0.32:459
chr3	190999917	rs6788319	C	A	2885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=4.130;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:395,181:0.31:576
chr3	190999990	rs6444535	C	T	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=2.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-0.119;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:254,114:0.31:368
chr3	191047532	rs9847278	A	G	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:308,166:0.35:474
chr3	191074873	rs188384	C	G	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:217,151:0.41:368
chr3	191075012	rs1520203	G	T	4224.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:140,202:0.59:342
chr3	191075649	rs28627146	A	G	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr3	191087551	rs697905	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:91,49:0.35:140
chr3	191087740	rs35380043	A	T	7882.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:270,385:0.59:655
chr3	191093053	rs2028572	T	C	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:304,145:0.32:449
chr3	191093080	rs2028573	A	G	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:368,183:0.33:551
chr3	191093175	rs2028574	T	A	5353.77	.	AC=1;AF=0.500;AN=2;DB;DP=1035;set=Intersection	GT:AD:AF:DP	0/1:696,331:0.32:1027
chr3	191093310	rs4677728	A	G	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.969;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:125,78:0.38:203
chr3	191093384	rs4677729	A	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:103,44:0.30:147
chr3	191093434	rs293806	A	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.170;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:56,26:0.32:82
chr3	191093475	rs4677730	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr3	191097908	rs293812	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:74,33:0.31:107
chr3	191097928	rs34031057	G	GT	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.322;QD=2.51;ReadPosRankSum=0.906;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:114,49:0.30:163
chr3	191097966	rs293813	T	C	1831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.824;QD=6.07;ReadPosRankSum=0.449;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:188,114:0.38:302
chr3	191098121	rs293814	C	T	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=1.325;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr3	191098731	rs211043	G	A	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-1.015;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:118,66:0.36:184
chr3	191100448	rs383529	G	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr3	191100561	rs364519	C	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:215,101:0.32:316
chr3	191100642	rs9838011	A	T	2583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.456;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:294,154:0.34:448
chr3	191107192	rs436393	A	G	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:56,109:0.66:165
chr3	191107358	rs147604673	C	T	11472.77	.	AC=1;AF=0.500;AN=2;DB;DP=959;set=Intersection	GT:AD:AF:DP	0/1:388,561:0.59:949
chr3	191888452	rs34265167	GA	G	3114.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.510;QD=13.37;ReadPosRankSum=-0.360;SOR=0.586;set=HC	GT:AD:AF:DP	1/1:23,210:0.90:233
chr3	192125768	rs2249551	A	G	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:227,121:0.35:348
chr3	192635348	rs9819230	C	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:58,41:0.41:99
chr3	192988355	rs369665855	T	C	3116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=1.725;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:374,186:0.33:560
chr3	192993762	rs13084990	C	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.820;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr3	192994543	rs2271791	A	G	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-1.050;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:85,40:0.32:125
chr3	192994757	rs11927848	A	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr3	193016895	rs1878716	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr3	193023255	rs10937578	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr3	193024928	rs10804952	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.689;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr3	193031926	rs2280268	C	T	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:236,133:0.36:369
chr3	193036794	rs6788770	G	C	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:221,110:0.33:331
chr3	193042776	rs11926955	T	C	2631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=4.91;ReadPosRankSum=1.395;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:368,168:0.31:536
chr3	193042964	rs11715170	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr3	193044923	rs1387700	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr3	193062906	rs6444706	G	A	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	193068800	rs1038719	G	A	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:48,93:0.66:141
chr3	193069125	rs55658952	G	C	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-1.599;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	193071888	rs11300573	CA	C	3644.73	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:151,234:0.61:385
chr3	193080414	rs6797429	C	G	10438.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr3	193081206	rs2367605	G	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	193081830	rs923496	A	G	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	193081866	rs4386441	T	A	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	193082138	rs923494	T	C	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	193090101	rs57458521	A	AGG,AAAAAGG	756.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=64.03;QD=84.08;SOR=1.863;set=HC	GT:AD:AF:DP	1/2:0,3,6:0.33,0.67:9
chr3	193090255	rs2171848	C	T	9359.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=43.53;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	193090260	rs6444712	T	C	9105.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=44.86;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	193096529	rs4687419	C	T	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	193120359	rs142743757	GA	G	855.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr3	193120726	rs62285692	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr3	193129807	rs6763501	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr3	193151468	rs62285712	T	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr3	193153562	rs1996735	T	C	6522.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr3	193156966	rs62285717	G	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.914;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=1.845;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:58,37:0.39:95
chr3	193158479	rs2171847	G	A	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-1.674;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:102,53:0.34:155
chr3	193159419	rs12497847	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:92,52:0.36:144
chr3	193159449	rs12497916	G	A	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr3	193171979	rs35424709	T	A	9167.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:224,430:0.66:654
chr3	193180400	rs56312820	A	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	193180510	rs62285744	G	T	16384.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=7.051;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=7.115;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.71;ReadPosRankSum=0.387;SOR=0.503;set=HC	GT:AD:AF:DP	1/1:8,655:0.99:663
chr3	193180592	rs59451116	G	A	21113.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	1/1:0,811:1.00:811
chr3	193180661	rs60585505	C	T	7792.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	193183039	rs7617230	T	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	193183817	rs3796181	A	G	8818.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr3	193201582	rs9842836	C	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:6,43:0.88:49
chr3	193209178	rs6788448	T	C	10426.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr3	193210768	rs2130407	A	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	193272417	rs9883845	A	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:15,54:0.78:69
chr3	193272442	rs10530570	CGTGTGTGTGTGT	C,CGTGTGTGT	2495.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=100;set=Intersection	GT:AF:DP	1/2:0.74,0.25:76
chr3	193332420	rs145894722	C	CTGTG	1568.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	193334991	rs7624750	G	A	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	193336639	rs3772393	T	C	11260.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:1,449:1.00:450
chr3	193355074	rs166850	T	C	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	193355102	rs10451941	T	C	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	193361917	rs77303706	G	A	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=2.475;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:130,90:0.41:220
chr3	193363695	rs34222475	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	193365974	rs9831900	T	G	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.299;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	193374964	rs9851685	T	C	7483.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr3	193375136	rs150732301	G	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr3	193377173	rs34558265	T	C	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	193383973	rs10804957	A	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	193384203	rs10937595	T	A	12187.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr3	193386239	rs12494482	C	T	39893.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=1587;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=-1.872;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:2,1521:1.00:1523
chr3	193854148	.	T	TA	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=5.600;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=5.049;QD=1.99;ReadPosRankSum=0.287;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:164,63:0.28:227
chr3	194061826	rs11711157	C	T	12559.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr3	194061906	rs4974538	T	C	13142.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:1,503:1.00:504
chr3	194062519	rs3732477	C	T	18894.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr3	194062565	rs3732476	C	T	21689.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:1,825:1.00:826
chr3	194063300	rs62288099	T	C	20749.77	.	AC=2;AF=1.00;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	1/1:0,821:1.00:821
chr3	194080336	rs4974533	G	A	9379.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:243,426:0.64:669
chr3	194080648	rs9682540	G	A	6798.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:209,314:0.60:523
chr3	194080696	rs9682541	G	A	9871.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:237,458:0.66:695
chr3	194080916	rs13070515	G	A	7188.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:192,334:0.63:526
chr3	194080983	rs13060627	C	T	7164.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:174,333:0.66:507
chr3	194081089	rs11713861	C	T	7903.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:208,374:0.64:582
chr3	194081179	rs11715737	G	A	11205.77	.	AC=1;AF=0.500;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	0/1:358,538:0.60:896
chr3	194081392	rs923936	G	A	13957.77	.	AC=1;AF=0.500;AN=2;DB;DP=1008;set=Intersection	GT:AD:AF:DP	0/1:351,651:0.65:1002
chr3	194081635	rs923935	T	C	9023.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:233,422:0.64:655
chr3	194118874	rs1223989	T	C	19137.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,717:1.00:717
chr3	194124646	.	TG	T	27	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5008;HP=11;HapScore=2;MGOF=2;MMLQ=26;MQ=60.0;NF=3;NR=0;PP=27;QD=13.0;SC=GTTAAAAAAGTGGGGGGGGGG;SbPval=1.0;Source=Platypus;TC=8;TCF=7;TCR=1;TR=3;WE=194124654;WS=194124636;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	194219556	rs140448895	A	T	4620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.822;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.551;QD=24.07;ReadPosRankSum=1.780;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:70,122:0.64:192
chr3	194219566	rs2185478	G	A	4371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-1.048;QD=25.57;ReadPosRankSum=2.099;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:61,110:0.64:171
chr3	194219775	.	G	GA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.644;QD=0.30;ReadPosRankSum=-0.218;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:190,36:0.16:226
chr3	194309528	rs789837	G	A	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	194313832	rs1773184	T	C	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	194325006	rs732124	A	G	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	194325325	rs708632	C	T	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	194331875	rs789993	A	T	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	194337901	rs922282	T	C	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.680;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:102,74:0.42:176
chr3	194344526	rs709011	G	C	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:171,102:0.37:273
chr3	194346544	rs1773191	T	A	24582.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=45.19;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,544:1.00:544
chr3	194346553	rs1773190	T	C	25873.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=42.42;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,610:1.00:610
chr3	194346803	rs1773189	A	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr3	194346822	rs1572979	G	A	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr3	194349027	rs1318216	A	G	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	194349178	rs1563970	C	T	8831.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:247,424:0.63:671
chr3	194353772	rs11273892	C	CCCGCCCGACAG	1945.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr3	194353875	rs1675955	G	T	1788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.664;QD=4.74;ReadPosRankSum=0.002;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:263,114:0.30:377
chr3	194365360	rs148242479	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:80,51:0.39:131
chr3	194371496	rs1773206	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr3	194373832	rs1675953	TG	CA	19769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.25;ReadPosRankSum=2.031;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:263,490:0.65:753
chr3	194373945	rs140901007	T	C	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:125,61:0.33:186
chr3	194379567	rs1675948	A	G	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:28,61:0.69:89
chr3	194379596	rs1705971	C	A	2649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=0.329;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:54,122:0.69:176
chr3	194379646	rs11438897	T	TC	8023.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.16;ReadPosRankSum=1.527;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:121,277:0.70:398
chr3	194379905	rs11357453	TA	T	827.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr3	194381530	rs1705969	A	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr3	194381680	rs1675947	G	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:45,68:0.60:113
chr3	194381716	rs1705968	G	C	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr3	194381742	rs1705967	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr3	194386136	rs1705966	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr3	194386881	rs1675944	A	G	5677.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:131,263:0.67:394
chr3	194387300	rs1675943	C	T	4332.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:75,193:0.72:268
chr3	194390617	rs1773230	G	C	2953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.432;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.294;QD=14.20;ReadPosRankSum=1.259;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:77,131:0.63:208
chr3	194390713	rs1675926	C	A	12340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=940;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-0.460;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:346,583:0.63:929
chr3	194390869	rs36028600	G	GA	3878.73	.	AC=1;AF=0.500;AN=2;DB;DP=343;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:111,185:0.62:296
chr3	194392683	rs1773231	A	C	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:112,165:0.60:277
chr3	194408704	rs4677673	A	G	25905.77	.	AC=2;AF=1.00;AN=2;DB;DP=1015;set=Intersection	GT:AD:AF:DP	1/1:0,1001:1.00:1001
chr3	194408716	rs11914982	G	C	4987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=960;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=3.148;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:635,312:0.33:947
chr3	194842876	rs12633541	C	T	9839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.939;ClippingRankSum=0.000;DB;DP=741;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=-0.675;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:280,456:0.62:736
chr3	194842876	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=27;MQ=60.0;NF=99;NR=132;PP=2944;QD=20;SC=GAAGGGGTGACAGAGCTCTTC;SbPval=0.4;Source=Platypus;TC=386;TCF=156;TCR=230;TR=231;WE=194842885;WS=194842866;set=Platypus	GT:AD:AF:DP	0/1:155,231:0.60:386
chr3	194842877	rs58370605	A	G	27618.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.15;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,724:1.00:724
chr3	194842911	rs12634646	A	G	4889.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:161,232:0.59:393
chr3	194877126	rs59556963	G	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr3	194877355	rs80244009	G	C	4463.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:115,219:0.66:334
chr3	194896233	rs201558663	T	TGA	2829.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=3.334;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:262,85:0.24:347
chr3	194896236	rs71988963	TGA	T	2850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.508;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=3.932;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:290,88:0.23:378
chr3	194896240	rs200404095	T	TGTG	2892.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=4.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=4.021;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:296,90:0.23:386
chr3	194928138	rs12495970	A	C	17369.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr3	194991000	rs74943389	G	A	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.340;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:75,36:0.32:111
chr3	194991220	rs7640099	AA	GC	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	194999996	rs7610022	T	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	195010023	rs200221117	T	TA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-1.169;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:137,29:0.17:166
chr3	195015307	rs71637158	CA	C	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-0.933;QD=9.84;ReadPosRankSum=1.155;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr3	195015336	.	AATTAT	A	86.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.528;QD=1.45;ReadPosRankSum=1.047;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr3	195015337	rs63414060	ATT	A	222.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.844;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=-0.732;QD=4.37;ReadPosRankSum=-0.853;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr3	195015340	rs371833041	ATAT	A	161.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=-0.614;QD=2.84;ReadPosRankSum=-0.275;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr3	195028183	rs13059843	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	195029738	rs10636354	G	GAAAGT	576.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	195076877	rs6437374	C	G	41884.77	.	AC=2;AF=1.00;AN=2;DB;DP=1640;set=Intersection	GT:AD:AF:DP	1/1:0,1631:1.00:1631
chr3	195131711	rs144136865	C	G	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:101,104:0.51:205
chr3	195245771	rs17847363	C	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:156,106:0.40:262
chr3	195245805	rs17847362	G	A	10600.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:1,417:1.00:418
chr3	195254670	.	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.670;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr3	195295661	rs7659	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	195295704	.	G	GC	2524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=67.83;MQRankSum=9.683;QD=19.57;ReadPosRankSum=-0.561;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:26,103:0.80:129
chr3	195295705	.	G	C	991	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=9;HapScore=1;MGOF=13;MMLQ=21;MQ=64.65;NF=50;NR=13;PP=991;QD=16.2820827388;SC=GTCTTTATGGGGGGGGGGTAG;SbPval=0.94;Source=Platypus;TC=119;TCF=81;TCR=38;TR=63;WE=195295716;WS=195295695;set=Platypus	GT:AD:AF:DP	1/0:56,63:0.53:119
chr3	195295708	rs142189206	G	GGGT,GGGGT	5823.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=148;set=Intersection	GT:AF:DP	1/2:0.81,0.19:131
chr3	195300676	rs1568566	A	G	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	195306055	rs4677691	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	195345828	rs148520845	AG	GA	39279.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=1512;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=48.09;MQRankSum=-0.656;QD=26.00;ReadPosRankSum=1.225;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:2,1509:1.00:1511
chr3	195345953	rs145174488	C	T	49751.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=2178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.30;MQRankSum=5.600;QD=22.97;ReadPosRankSum=13.937;SOR=0.604;set=HC	GT:AD:AF:DP	1/1:99,2067:0.95:2166
chr3	195346331	rs142792605	C	G	1595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.26;MQRankSum=2.158;QD=29.55;ReadPosRankSum=1.700;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,52:0.96:54
chr3	195346352	rs201553387	C	T	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=27.880;MLEAC=1;MLEAF=0.500;MQ=49.10;MQRankSum=3.513;QD=8.72;ReadPosRankSum=4.107;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:36,33:0.48:69
chr3	195346477	rs7631117	C	T	4636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=4.126;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=0.808;QD=10.71;ReadPosRankSum=0.286;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:210,223:0.52:433
chr3	195346533	.	A	G	9964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.000;ClippingRankSum=0.000;DP=1037;ExcessHet=3.0103;FS=32.793;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=-25.174;QD=10.05;ReadPosRankSum=-8.035;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:720,272:0.27:992
chr3	195346535	.	CA	AG	10226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.974;ClippingRankSum=0.000;DP=1079;ExcessHet=3.0103;FS=29.710;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-25.106;QD=9.95;ReadPosRankSum=-7.415;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:736,292:0.28:1028
chr3	195346861	rs116014205	T	C	5975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;ClippingRankSum=0.000;DB;DP=1390;ExcessHet=3.0103;FS=6.827;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=-30.666;QD=4.32;ReadPosRankSum=3.104;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:993,390:0.28:1383
chr3	195346900	rs114465812	T	C	2195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.530;ClippingRankSum=0.000;DB;DP=1802;ExcessHet=3.0103;FS=15.653;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-21.822;QD=1.22;ReadPosRankSum=-10.310;SOR=2.431;set=HC	GT:AD:AF:DP	0/1:1629,167:0.09:1796
chr3	195346906	rs62286967	C	T	2506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.787;ClippingRankSum=0.000;DB;DP=1859;ExcessHet=3.0103;FS=14.499;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-19.817;QD=1.35;ReadPosRankSum=-7.707;SOR=2.338;set=HC	GT:AD:AF:DP	0/1:1660,193:0.10:1853
chr3	195346945	rs116044101	C	A	12402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.043;ClippingRankSum=0.000;DB;DP=2232;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-24.017;QD=5.65;ReadPosRankSum=-2.991;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:1479,715:0.33:2194
chr3	195347059	rs2410778	C	T	7331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;ClippingRankSum=0.000;DB;DP=2379;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=2.347;QD=3.10;ReadPosRankSum=2.002;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:1806,556:0.24:2362
chr3	195377629	rs138964810	C	T	22448.77	.	AC=1;AF=0.500;AN=2;DB;DP=1365;set=Intersection	GT:AD:AF:DP	0/1:733,626:0.46:1359
chr3	195377651	rs139047772	T	C	21889.77	.	AC=1;AF=0.500;AN=2;DB;DP=1243;set=Intersection	GT:AD:AF:DP	0/1:661,574:0.46:1235
chr3	195395289	rs79370883	A	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-6.777;QD=3.39;ReadPosRankSum=0.186;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:132,38:0.22:170
chr3	195395314	rs79206144	G	A	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=2.626;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-13.007;QD=4.53;ReadPosRankSum=-0.156;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:283,102:0.26:385
chr3	195395328	rs62287989	T	C	4908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-15.743;QD=8.86;ReadPosRankSum=-0.477;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:407,147:0.27:554
chr3	195395334	rs75539242	A	T	4958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.982;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-16.112;QD=8.59;ReadPosRankSum=-0.213;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:425,152:0.26:577
chr3	195395347	rs78747381	G	A	5198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-17.850;QD=7.13;ReadPosRankSum=3.104;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:563,166:0.23:729
chr3	195395354	rs80181010	A	G	2250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=792;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-17.979;QD=2.85;ReadPosRankSum=2.553;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:615,176:0.22:791
chr3	195395379	rs73216381	T	G	15141.77	.	AC=1;AF=0.500;AN=2;DB;DP=984;set=Intersection	GT:AD:AF:DP	0/1:291,690:0.70:981
chr3	195395533	rs9847770	C	T	15317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;ClippingRankSum=0.000;DB;DP=1108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.41;MQRankSum=-1.046;QD=13.99;ReadPosRankSum=-0.339;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:370,725:0.66:1095
chr3	195395549	rs58717446	C	CAT	29733.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.884;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=49.70;MQRankSum=-5.995;QD=31.43;ReadPosRankSum=1.485;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:163,783:0.83:946
chr3	195395624	rs74539433	A	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=-6.533;QD=0.13;ReadPosRankSum=-4.055;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:210,28:0.12:238
chr3	195395631	rs201911835	A	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.746;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=5.356;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-6.532;QD=1.54;ReadPosRankSum=-3.068;SOR=1.614;set=HC	GT:AD:AF:DP	0/1:129,11:0.08:140
chr3	195398250	rs80193871	C	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:115,51:0.31:166
chr3	195398271	rs142433257	A	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,31:0.29:106
chr3	195412738	.	A	AACACGTATCTGGTGCTGTATTGGAATCATCCCAAAAAACCAAGGCTTGCATTGCATATCTAT	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.922;ClippingRankSum=0.000;DP=681;ExcessHet=3.0103;FS=41.297;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-0.969;QD=0.57;ReadPosRankSum=-5.501;SOR=6.426;set=HC	GT:AD:AF:DP	0/1:581,53:0.08:634
chr3	195412876	rs11185503	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:3,48:0.94:51
chr3	195415423	rs150892404	A	G	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.83;QD=24.28;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	195426490	rs3107775	A	G	9266.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:165,414:0.72:579
chr3	195447795	rs147994480	CCCT	C	706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.830;QD=13.59;ReadPosRankSum=0.336;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr3	195447805	.	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-2.154;QD=0.95;ReadPosRankSum=-2.386;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr3	195447886	rs7627924	G	C	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.353;QD=2.55;ReadPosRankSum=2.883;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:201,58:0.22:259
chr3	195451880	rs142096782	AG	GA	29563.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=1178;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=47.52;MQRankSum=1.188;QD=25.14;ReadPosRankSum=-2.323;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:2,1174:1.00:1176
chr3	195452005	rs145612981	C	T	5746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.234;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=10.747;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-5.213;QD=12.69;ReadPosRankSum=-18.480;SOR=1.243;set=HC	GT:AD:AF:DP	0/1:206,247:0.55:453
chr3	195452018	rs2688539	A	G	1653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.870;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=21.337;MLEAC=1;MLEAF=0.500;MQ=46.97;MQRankSum=-7.593;QD=6.89;ReadPosRankSum=-10.731;SOR=2.157;set=HC	GT:AD:AF:DP	0/1:208,32:0.13:240
chr3	195452951	rs2688542	G	C	21523.77	.	AC=1;AF=0.500;AN=2;DB;DP=1053;set=Intersection	GT:AD:AF:DP	0/1:146,898:0.86:1044
chr3	195452960	rs4093817	G	A	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.053;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=18.557;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-21.038;QD=0.42;ReadPosRankSum=-6.703;SOR=2.455;set=HC	GT:AD:AF:DP	0/1:998,114:0.10:1112
chr3	195453064	rs2550233	T	G	18745.77	.	AC=2;AF=1.00;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr3	195453243	rs3828408	C	T	10252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.306;ClippingRankSum=0.000;DB;DP=1803;ExcessHet=3.0103;FS=11.469;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-10.594;QD=5.69;ReadPosRankSum=-1.493;SOR=1.481;set=HC	GT:AD:AF:DP	0/1:1447,354:0.20:1801
chr3	195453249	rs3828407	T	C	10795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.316;ClippingRankSum=0.000;DB;DP=1812;ExcessHet=3.0103;FS=9.433;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-10.446;QD=5.96;ReadPosRankSum=0.889;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:1431,379:0.21:1810
chr3	195453310	rs9758494	G	A	25575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.002;ClippingRankSum=0.000;DB;DP=2285;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=2.072;QD=11.24;ReadPosRankSum=6.271;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:1022,1253:0.55:2275
chr3	195453434	rs113099255	G	A	17522.77	.	AC=1;AF=0.500;AN=2;DB;DP=1166;set=Intersection	GT:AD:AF:DP	0/1:366,792:0.68:1158
chr3	195456478	rs111854338	C	T	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:81,114:0.58:195
chr3	195460236	rs712011	G	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,43:0.44:97
chr3	195466662	rs3844569	T	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:37,83:0.69:120
chr3	195467837	rs56381108	A	G	3231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.45;ReadPosRankSum=-0.802;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:63,95:0.60:158
chr3	195467853	rs56050330	C	T	2632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=1.379;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:46,66:0.59:112
chr3	195475799	rs3205933	C	T	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:56,90:0.62:146
chr3	195476084	rs55798120	C	T	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.864;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-0.804;QD=13.50;ReadPosRankSum=0.126;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:34,46:0.57:80
chr3	195476084	.	CA	TG	592	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=59.45;NF=5;NR=29;PP=592;QD=18.9843492607;SC=TTCAGATCAGCATGGTGGATA;SbPval=0.63;Source=Platypus;TC=62;TCF=10;TCR=52;TR=34;WE=195476093;WS=195476074;set=Platypus	GT:AD:AF:DP	0/1:28,34:0.55:62
chr3	195476085	rs2688497	A	G	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=37.96;SOR=2.720;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	195477713	rs2291654	G	A	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.16;QD=45.33;SOR=2.425;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	195477713	.	GCC	ACA	2928	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=9;HapScore=1;MGOF=22;MMLQ=27;MQ=57.73;NF=52;NR=14;PP=2928;QD=20;SC=CTGTTTGCCCGCCCCCCGCAG;SbPval=0.52;Source=Platypus;TC=67;TCF=53;TCR=14;TR=66;WE=195477723;WS=195477703;set=Platypus	GT:AD:AF:DP	1/1:1,66:0.99:67
chr3	195477715	rs2291653	C	A	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.21;QD=44.20;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	195477786	rs6808605	C	T	6193.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:166,292:0.64:458
chr3	195477791	rs2291652	G	A	3204.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:342,182:0.35:524
chr3	195478012	rs2291651	G	C	16382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.334;ClippingRankSum=0.000;DB;DP=784;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.79;ReadPosRankSum=1.283;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:2,717:1.00:719
chr3	195479226	rs6792437	G	A	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:94,163:0.63:257
chr3	195479256	rs2258447	T	C	10097.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:2,395:0.99:397
chr3	195484244	rs2550270	G	A	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr3	195487737	rs2246771	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr3	195489009	rs2246901	C	A	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:246,137:0.36:383
chr3	195489067	rs2246980	C	G	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:364,206:0.36:570
chr3	195489669	rs2550263	C	T	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:225,107:0.32:332
chr3	195490284	rs2550261	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr3	195490838	rs377595393	ATCCAGAT	AAGAT,A	665.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=78;set=Intersection	GT:AF:DP	0/1:0.26:76
chr3	195490842	rs34858176	AGATG	A	665.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=0.857;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:60,22:0.27:82
chr3	195492027	rs11926236	T	C	26831.77	.	AC=2;AF=1.00;AN=2;DB;DP=1081;set=Intersection	GT:AD:AF:DP	1/1:0,1068:1.00:1068
chr3	195495916	rs2550240	G	C	4550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DB;DP=912;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=0.185;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:620,283:0.31:903
chr3	195496129	rs2688492	C	T	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	195497174	rs2259102	C	G	14844.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,581:1.00:581
chr3	195497743	rs2260685	T	C	4882.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:447,279:0.38:726
chr3	195497809	rs2259153	T	C	7316.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	195501149	rs2259292	C	T	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr3	195501258	rs2259331	T	C	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	195505417	rs2259419	G	A	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	195505664	rs2688513	G	A	9637.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr3	195512042	rs6805660	T	C	11287.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	195512079	rs200031229	C	A	2667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-5.923;QD=7.76;ReadPosRankSum=0.836;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:239,105:0.31:344
chr3	195512103	rs437805	G	A	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=2.802;QD=2.65;ReadPosRankSum=0.759;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:235,68:0.22:303
chr3	195512107	rs374495657	T	A	10389.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;QD=35.83;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	195512107	.	TCATGAAGAGC	ACATGAAGAGC,ACATGAAGAGG	710	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=54;MMLQ=23;MQ=57.67;NF=57,15;NR=74,20;PP=710,311;QD=5.68527643166;SC=AGCATCGGTGTCATGAAGAGC;SbPval=0.56;Source=Platypus;TC=135;TCF=59;TCR=76;TR=131,35;WE=195512125;WS=195512093;set=Platypus	GT:AF:DP	0/1:0.97:135
chr3	195512117	rs200655750	C	G	2042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-6.707;QD=7.89;ReadPosRankSum=1.057;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:196,63:0.24:259
chr3	195512186	rs202060675	T	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	195512212	rs75588776	G	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=8.824;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=-0.068;QD=4.45;ReadPosRankSum=0.735;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:67,30:0.31:97
chr3	195515414	rs71180964	T	TGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATTCTGAGGAAGTGTC	705.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.424;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-2.421;QD=10.86;ReadPosRankSum=1.535;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:57,8:0.12:65
chr3	195515568	rs62282504	C	T	3691.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:91,172:0.65:263
chr3	195515594	rs13095016	C	G	11677.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr3	195515617	rs2641776	G	C	11879.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	195516305	rs3749331	C	T	6764.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:201,317:0.61:518
chr3	195516630	rs3103954	G	T	17665.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr3	195516878	rs2177336	T	C	14274.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:1,548:1.00:549
chr3	195517258	rs1106502	G	A	10177.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr3	195517321	rs1104760	G	A	10791.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr3	195517553	rs882605	A	C	16382.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr3	195518112	rs142781032	T	TGTCTCCTGCGTAACA	7724.73	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chr3	195518330	rs3107764	C	G	7097.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr3	195538501	rs143120396	TTC	T	5063.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=1317;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-3.393;QD=4.05;ReadPosRankSum=0.449;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:947,302:0.24:1249
chr3	195595054	rs7516	C	T	2863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.057;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:444,182:0.29:626
chr3	195595632	rs13087251	A	G	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:183,130:0.42:313
chr3	195597064	rs377761048	T	C	5819.77	.	AC=1;AF=0.500;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	0/1:591,328:0.36:919
chr3	195603634	rs11185487	G	A	1286.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	195603652	rs9815549	T	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr3	195638430	rs143346194	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr3	195686891	rs201127123	T	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-6.261;QD=4.17;ReadPosRankSum=-2.247;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:88,37:0.30:125
chr3	195690163	rs201372496	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=55.67;MQRankSum=-10.332;QD=0.17;ReadPosRankSum=-4.276;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:252,32:0.11:284
chr3	195692347	rs62282794	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-10.482;QD=0.56;ReadPosRankSum=0.399;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:282,48:0.15:330
chr3	195710971	rs4927836	G	T	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-16.895;QD=1.51;ReadPosRankSum=-1.058;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:556,119:0.18:675
chr3	195710989	rs2620604	G	A	3592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.372;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-19.119;QD=4.91;ReadPosRankSum=-0.520;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:600,131:0.18:731
chr3	195710993	rs4927692	A	G	3791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-18.339;QD=5.07;ReadPosRankSum=-1.123;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:607,141:0.19:748
chr3	195779155	rs41298097	C	T	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.46;SOR=1.578;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	195779163	.	CTTT	C,CT	1834.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=38.22;ReadPosRankSum=1.523;SOR=0.808;set=HC	GT:AD:AF:DP	1/2:1,36,11:0.75,0.23:48
chr3	195779173	rs41298095	T	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-0.608;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr3	195782176	rs419068	CA	TG	20445.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr3	195782184	rs419059	C	T	19620.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.06;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,426:1.00:426
chr3	195784997	rs3933	G	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	195789376	rs526860	C	T	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=13.15;ReadPosRankSum=-1.341;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:24,41:0.63:65
chr3	195789428	rs507131	C	A	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.63;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	195792288	.	CGGGG	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-0.000;QD=18.10;ReadPosRankSum=0.253;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	195798258	rs480760	T	C	39959.77	.	AC=2;AF=1.00;AN=2;DB;DP=1581;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,1557:1.00:1557
chr3	195801917	.	C	CAA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=10.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.516;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	195804021	rs41300435	G	A	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:78,143:0.65:221
chr3	195926234	rs939892	T	C	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	195935207	rs12497404	C	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	195936446	rs4916502	C	T	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	195937678	rs12718059	G	A	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	195937977	rs13079891	A	G	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:240,146:0.38:386
chr3	195938177	rs1522394	A	G	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:203,140:0.41:343
chr3	195941216	rs7642243	C	G	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:249,129:0.34:378
chr3	195943481	rs56030157	C	T	3978.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:443,223:0.33:666
chr3	195953775	rs68119320	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:57,32:0.36:89
chr3	195954078	rs57985677	C	CCGTCACTTT	3613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.930;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=7.788;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.590;QD=9.44;ReadPosRankSum=1.607;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:275,108:0.28:383
chr3	195955762	rs939885	G	A	8198.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:163,380:0.70:543
chr3	195956726	rs144375332	AAG	A	1140.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr3	195956827	rs17852687	T	C	2399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.348;QD=6.50;ReadPosRankSum=4.043;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:228,141:0.38:369
chr3	195959924	rs1476331	T	C	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:144,79:0.35:223
chr3	195960225	rs9343	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr3	195968643	rs1045075	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:90,46:0.34:136
chr3	195984818	.	TA	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.143;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:122,29:0.19:151
chr3	195994049	.	C	CA	361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.179;QD=1.86;ReadPosRankSum=0.252;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:138,56:0.29:194
chr3	196050862	rs36016914	A	G	8030.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:238,377:0.61:615
chr3	196051087	rs147354585	GTC	G	1293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=3.827;QD=1.34;ReadPosRankSum=0.512;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:838,131:0.14:969
chr3	196054439	rs6785339	T	G	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:130,90:0.41:220
chr3	196054488	rs6782336	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr3	196088809	.	T	TA	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.094;QD=1.50;ReadPosRankSum=0.944;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:109,35:0.24:144
chr3	196096451	rs9860931	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr3	196130005	rs6799210	A	G	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr3	196158773	rs6583309	G	A	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:100,146:0.59:246
chr3	196199204	rs3796129	G	T	4001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=2.014;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:378,216:0.36:594
chr3	196210590	rs7643192	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-1.815;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	196210808	rs7646174	T	C	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.856;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:54,20:0.27:74
chr3	196215352	rs34023868	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.027;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr3	196215451	rs62798260	CA	C	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.929;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.830;QD=3.18;ReadPosRankSum=1.101;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:81,40:0.33:121
chr3	196215660	rs11185543	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr3	196229966	.	C	T	16187.77	.	AC=1;AF=0.500;AN=2;DP=1214;set=Intersection	GT:AD:AF:DP	0/1:430,768:0.64:1198
chr3	196294104	rs9842616	C	G	12934.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,496:1.00:496
chr3	196386964	rs1798631	C	G	25557.77	.	AC=2;AF=1.00;AN=2;DB;DP=1002;set=Intersection	GT:AD:AF:DP	1/1:0,980:1.00:980
chr3	196388023	rs62636585	C	G	17369.77	.	AC=1;AF=0.500;AN=2;DB;DP=1282;set=Intersection	GT:AD:AF:DP	0/1:473,796:0.63:1269
chr3	196388099	rs62623661	G	C	7176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=1197;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.026;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:776,410:0.35:1186
chr3	196435331	rs55901490	CAG	C	7727.73	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:117,197:0.63:314
chr3	196435534	rs6776064	T	C	5008.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:144,248:0.63:392
chr3	196443803	rs1906044	T	C	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	196443826	rs1906045	A	G	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:36,52:0.59:88
chr3	196443947	rs35314545	G	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.973;QD=3.43;ReadPosRankSum=0.411;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr3	196448103	rs9864896	C	T	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:103,161:0.61:264
chr3	196449443	rs200546966	G	C	8283.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:199,375:0.65:574
chr3	196453427	rs1976847	C	A	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:99,203:0.67:302
chr3	196453467	rs1568603	A	C	8237.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:193,385:0.67:578
chr3	196453654	rs12637375	C	A	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:54,122:0.69:176
chr3	196455682	rs71323744	G	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:129,96:0.43:225
chr3	196458052	.	AT	A	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-2.966;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr3	196460680	rs34830136	C	T	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:448,196:0.30:644
chr3	196533671	rs35013100	G	A	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:146,58:0.28:204
chr3	196541580	rs11185455	G	A	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=0.417;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:73,41:0.36:114
chr3	196544948	rs56172538	T	C	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=0.283;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr3	196547446	rs2084382	G	C	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:70,125:0.64:195
chr3	196547538	rs2166799	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	196554266	rs62410763	C	T	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.248;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:66,96:0.59:162
chr3	196554314	rs77117853	G	T	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr3	196613683	rs150375675	A	AG	431.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr3	196626689	rs9842002	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr3	196627088	rs9825635	A	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr3	196627335	rs6764463	T	C	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:28,63:0.69:91
chr3	196627356	rs9810317	C	T	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.646;QD=26.20;ReadPosRankSum=-0.731;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:22,48:0.69:70
chr3	196627361	rs6772870	G	A	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.597;QD=28.82;ReadPosRankSum=-1.918;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:18,45:0.71:63
chr3	196654507	rs10663759	T	TA	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=4.35;ReadPosRankSum=2.224;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr3	196656772	rs1602	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr3	196657670	rs63736860	CT	C	1205.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:152,94:0.38:246
chr3	196666059	rs553783	A	G	2931.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:332,168:0.34:500
chr3	196669488	rs3214858	C	CA	8551.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	196669912	rs335824	C	T	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:170,88:0.34:258
chr3	196674259	rs61179255	G	A	7876.77	.	AC=1;AF=0.500;AN=2;DB;DP=1036;set=Intersection	GT:AD:AF:DP	0/1:596,431:0.42:1027
chr3	196674518	rs1147238	A	G	3937.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:457,229:0.33:686
chr3	196674749	rs4916589	C	T	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:353,171:0.33:524
chr3	196674916	rs1147240	A	C	17841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=1355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=-1.072;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:493,852:0.63:1345
chr3	196674972	rs574365	CT	TC	12767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=964;ExcessHet=3.0103;FS=1.150;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-1.338;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:604,349:0.37:953
chr3	196742290	rs9855410	T	C	2751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.136;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:398,178:0.31:576
chr3	196742395	rs41284049	G	A	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.028;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:317,130:0.29:447
chr3	196743130	rs6779362	T	C	4065.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:311,220:0.41:531
chr3	196746629	rs1056664	T	C	4793.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:499,274:0.35:773
chr3	196749798	rs2288766	T	G	8271.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr3	196750016	rs2288765	A	G	11157.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr3	196750841	rs2280294	C	A	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:208,166:0.44:374
chr3	196750847	rs113733046	C	T	4055.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:159,203:0.56:362
chr3	196751474	rs2280296	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr3	196754519	rs2276789	G	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.827;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:71,41:0.37:112
chr3	196771513	rs34492126	G	A	9572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.803;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:312,461:0.60:773
chr3	196771554	rs35370245	T	C	9507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=768;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=1.455;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:300,461:0.61:761
chr3	196793475	rs41284053	A	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr3	196812291	rs76509927	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	196817735	rs77261739	A	T	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:61,117:0.66:178
chr3	196831946	rs78225142	C	T	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:83,106:0.56:189
chr3	196865301	rs115934144	A	G	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.895;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=-1.739;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:29,52:0.64:81
chr3	196869688	rs7628652	A	G	6330.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr3	196869820	rs9866550	T	A	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	197020630	rs364644	G	A	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:75,154:0.67:229
chr3	197020718	rs434681	T	C	5991.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:171,288:0.63:459
chr3	197020780	rs3836429	G	GA	2886.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:86,140:0.62:226
chr3	197020871	rs450891	G	A	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr3	197239266	rs9325394	C	G	9677.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr3	197361944	rs11918438	G	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr3	197362103	rs28434055	G	T	10092.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:360,489:0.58:849
chr3	197362179	rs11915811	T	C	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:83,113:0.58:196
chr3	197463815	rs189627174	A	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	197482760	rs13068986	C	G	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	197483279	rs6794391	A	G	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	197490285	.	CA	C	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DP=339;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=2.562;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:219,94:0.30:313
chr3	197495334	rs3205525	G	A	7375.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	197496984	rs1708460	A	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	197500394	rs3830497	T	TTTTG	14628.73	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:11,338:0.97:349
chr3	197544200	rs55896070	C	CGTGTGTGTGTGT	1467.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.31;QD=37.63;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	197544201	.	A	ATTTTGTGTGTGTGTGCG	1469.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.05;QD=58.79;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	197544217	.	C	CTGTG	186.87	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.37;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	197557635	rs501101	C	T	8500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-2.703;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:319,421:0.57:740
chr3	197566084	rs4857594	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr3	197574936	rs2306439	G	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:83,44:0.35:127
chr3	197579466	rs36078463	C	T	3100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.853;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:481,204:0.30:685
chr3	197581147	rs9863587	A	G	9245.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,351:0.99:353
chr3	197585598	rs59909069	C	T	4373.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:112,203:0.64:315
chr3	197597044	rs77281724	C	T	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:232,263:0.53:495
chr3	197602505	rs9758121	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr3	197616627	rs76681357	T	G	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:127,222:0.64:349
chr3	197639381	rs9809736	A	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr3	197653147	rs9823673	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr3	197659160	rs67877771	C	G	13015.77	.	AC=1;AF=0.500;AN=2;DB;DP=947;set=Intersection	GT:AD:AF:DP	0/1:314,623:0.66:937
chr3	197665599	rs9880989	G	T	9150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.208;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:294,442:0.60:736
chr3	197687433	rs113060473	G	GA	2461.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:44,77:0.64:121
chr3	197701913	rs7373165	G	T	1444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.000;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:59,71:0.55:130
chr3	197702016	rs7373174	G	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=0.808;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr3	197712759	rs7373242	T	C	8539.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:216,418:0.66:634
chr3	197717643	rs150387425	A	ATATT	4463.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:73,114:0.61:187
chr3	197762623	rs7640149	G	A	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.395;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-0.806;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:21,42:0.67:63
chr3	197765432	rs73091377	C	T	5966.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:142,278:0.66:420
chr4	53428	rs2859214	G	A	20340.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	1/1:0,755:1.00:755
chr4	60303	rs3864127	G	A	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.106;QD=3.54;ReadPosRankSum=0.185;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:290,102:0.26:392
chr4	60335	rs2780400	A	T	7042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.92;ReadPosRankSum=0.391;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:131,262:0.67:393
chr4	60345	rs4248885	G	A	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=1.907;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:282,85:0.23:367
chr4	60400	rs3864128	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:98,73:0.43:171
chr4	60448	rs2780399	G	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=2.231;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr4	67783	rs35464588	CT	C	727.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.370;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:163,93:0.36:256
chr4	67857	rs6599364	C	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:61,37:0.38:98
chr4	85995	rs61336127	C	CA	12159.73	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.79;QD=39.22;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr4	86016	rs57253237	G	GC	12009.73	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.17;QD=43.51;SOR=1.024;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr4	86022	rs74490941	C	A	9691.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.17;QD=46.60;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	86023	rs78362263	A	T	9736.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.10;QD=46.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	86024	rs77715101	G	A	9736.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.12;QD=46.59;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	86031	rs367720730	CA	C	9907.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.17;QD=46.73;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	86034	rs57594632	TC	T	9862.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.25;QD=46.52;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	86040	rs17853557	G	T	10096.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.17;QD=47.63;SOR=1.307;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	86042	rs17857099	A	G	10360.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.19;QD=48.41;SOR=1.449;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	86044	rs17857100	G	A	10160.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=4.347;MLEAC=2;MLEAF=1.000;MQ=56.44;MQRankSum=-0.576;QD=43.42;ReadPosRankSum=1.659;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,233:1.00:234
chr4	86101	rs58319295	G	GC	19551.73	.	AC=2;AF=1.00;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=37.10;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,527:1.00:527
chr4	86738	rs2353625	A	G	13745.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr4	87277	rs2006764	G	C	17387.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.91;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,671:1.00:671
chr4	87313	rs60154095	G	GA	24513.73	.	AC=2;AF=1.00;AN=2;DB;DP=677;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=37.14;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,660:1.00:660
chr4	135694	rs12504142	G	A	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.15;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	331693	rs5855672	G	GC	24696.73	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr4	432308	rs139387027	T	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.256;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr4	436395	.	C	A	3464.77	.	AC=1;AF=0.500;AN=2;DP=470;set=Intersection	GT:AD:AF:DP	0/1:273,188:0.41:461
chr4	500631	rs4690182	A	G	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr4	648643	rs10902758	G	A	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	648805	.	C	T	234.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr4	663908	rs28675771	A	G	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-0.415;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:136,94:0.41:230
chr4	664028	.	A	ATT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=6.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.450;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr4	738512	rs6841958	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr4	738516	.	C	A	313.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr4	755025	rs2242233	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:94,68:0.42:162
chr4	758742	rs200338544	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr4	759709	rs6810428	A	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr4	759733	rs6816483	T	C	5165.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	780286	rs10794536	C	G	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	780549	rs13128363	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr4	786401	rs2306251	T	C	5380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.741;QD=7.27;ReadPosRankSum=2.142;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:446,294:0.40:740
chr4	786508	rs2306250	T	C	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	843609	.	C	CGGGGGGGGG	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.929;ClippingRankSum=0.000;DP=326;ExcessHet=3.0103;FS=138.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-0.826;SOR=6.665;set=HC	GT:AD:AF:DP	0/1:223,27:0.11:250
chr4	843613	.	C	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.487;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=104.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-3.464;SOR=6.089;set=HC	GT:AD:AF:DP	0/1:228,20:0.08:248
chr4	843622	.	A	AC	1273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=5.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=2.404;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:36,58:0.62:94
chr4	843695	rs8093	A	G	3139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=-0.636;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:233,173:0.43:406
chr4	845772	rs10031922	T	C	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	853483	rs199901666	G	A	4115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.198;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:183,207:0.53:390
chr4	858866	rs1026739	G	A	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:109,85:0.44:194
chr4	858874	rs3214922	T	TC	3202.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:110,88:0.44:198
chr4	858941	rs1026738	T	C	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	860146	rs2306248	A	G	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=1.071;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chr4	860192	rs1064207	A	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:126,71:0.36:197
chr4	871675	rs1564280	A	G	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	876399	rs3736086	T	C	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:138,129:0.48:267
chr4	877709	rs3736083	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr4	878048	rs899387	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr4	887513	rs33951409	AC	A	660.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr4	892011	rs146446950	C	T	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,70:0.45:155
chr4	906647	rs2279178	A	G	12160.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr4	946226	rs11552301	T	C	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-0.182;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:46,26:0.36:72
chr4	946262	.	CTGTGTGTGTGTGTGTG	C,CTGTGTGTGTGTG	1093.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.51;SOR=2.387;set=HC	GT:AD:AF:DP	1/2:0,15,12:0.56,0.44:27
chr4	946974	rs2290405	G	A	5178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-0.182;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:367,283:0.44:650
chr4	954247	rs3733345	G	T	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	954275	rs3733346	T	C	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	954275	.	TGT	CGC	2772	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=1;HapScore=1;MGOF=18;MMLQ=23;MQ=60.0;NF=57;NR=34;PP=2772;QD=20;SC=GGGAAGATGCTGTGGTCAGGG;SbPval=0.6;Source=Platypus;TC=98;TCF=60;TCR=38;TR=91;WE=954285;WS=954265;set=Platypus	GT:AD:AF:DP	1/1:7,91:0.93:98
chr4	954277	rs3733347	T	C	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	954311	rs3733349	C	T	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:139,131:0.49:270
chr4	957778	rs2335500	G	A	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.272;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:56,53:0.49:109
chr4	958090	rs34406303	G	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr4	959063	rs143484618	G	A	3053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=2.115;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:255,173:0.40:428
chr4	960081	rs4690324	G	A	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr4	960713	rs4690196	G	A	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:86,92:0.52:178
chr4	961191	rs1377587	A	G	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	961373	rs1377586	G	A	4414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-2.095;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:148,217:0.59:365
chr4	962053	rs62294487	G	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=8.743;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.321;QD=1.49;ReadPosRankSum=-2.214;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr4	962056	rs62294488	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=8.994;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.274;QD=1.67;ReadPosRankSum=-2.621;SOR=3.019;set=HC	GT:AD:AF:DP	0/1:30,4:0.12:34
chr4	980464	rs4690220	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr4	980896	rs11248061	C	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr4	980932	rs10902762	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr4	980971	rs10794537	T	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	982852	rs3796621	G	A	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:128,192:0.60:320
chr4	983060	rs3796622	T	C	21585.77	.	AC=2;AF=1.00;AN=2;DB;DP=843;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,829:1.00:829
chr4	983625	rs3796623	C	T	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:95,91:0.49:186
chr4	983809	rs4690221	C	T	6012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.877;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:330,314:0.49:644
chr4	985727	rs3822020	A	G	10633.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr4	1019054	rs145808953	CCA	C	987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.401;QD=1.73;ReadPosRankSum=-2.163;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:479,91:0.16:570
chr4	1050437	rs7680608	C	G	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	1050653	rs3816474	G	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	1050849	rs10003009	GT	AC	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	1050909	rs9992925	A	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	1052009	rs13114658	A	G	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	1052078	rs2290410	A	T	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	1052125	rs11724371	T	C	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	1052166	rs2248083	A	C	11376.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr4	1052206	rs2045069	T	C	11760.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	1052212	rs2045068	G	A	11714.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr4	1052355	rs2045067	C	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	1067267	rs2290408	G	T	260.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	1067638	rs6852155	T	G	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	1084723	rs658846	G	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	1087168	rs61648964	A	AAT	8041.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.75;SOR=1.375;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	1087171	rs59985183	G	T	8097.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	1087265	rs1670534	T	C	13446.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.145;QD=25.04;ReadPosRankSum=-1.576;SOR=0.411;set=HC	GT:AD:AF:DP	1/1:3,534:0.99:537
chr4	1087327	rs138488801	G	GCTGCCCAGGCTGGAGCCAGCC	14813.73	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=50.39;SOR=1.394;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr4	1087329	rs118112880	C	T	15583.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=58.59;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr4	1087338	rs11725984	C	T	12632.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.56;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr4	1087401	rs56889100	G	A	3008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-0.127;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:188,150:0.44:338
chr4	1087487	rs60035268	G	A	3255.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:155,163:0.51:318
chr4	1087901	rs13106356	A	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	1090625	rs4045481	G	A	7211.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.342;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=-0.817;SOR=0.272;set=HC	GT:AD:AF:DP	1/1:1,286:1.00:287
chr4	1102050	rs4974644	C	T	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	1164277	rs2279279	C	G	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	1164508	rs13140868	C	T	4262.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:293,224:0.43:517
chr4	1164552	rs13115935	A	G	7932.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=4.871;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=1.671;SOR=1.521;set=HC	GT:AD:AF:DP	1/1:1,306:1.00:307
chr4	1165130	rs11247975	G	T	12718.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr4	1165587	rs2242279	C	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:84,55:0.40:139
chr4	1165741	rs922697	A	G	10150.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr4	1194594	rs13115903	A	T	8643.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:252,405:0.62:657
chr4	1194630	rs56401136	T	C	5514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=844;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=-3.569;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:531,307:0.37:838
chr4	1207458	rs145253288	GCTGGGCA	G	1349.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr4	1207517	rs11247979	T	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	1215585	rs1250088	T	C	3177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=0.657;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:233,175:0.43:408
chr4	1217056	rs2004531	G	A	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	1243329	rs79746330	C	G	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.099;QD=9.08;ReadPosRankSum=-0.600;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:38,34:0.47:72
chr4	1243404	rs1680033	C	T	3951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.022;QD=9.57;ReadPosRankSum=1.289;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:210,203:0.49:413
chr4	1243573	rs1680032	T	C	10697.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:2,401:1.00:403
chr4	1243617	rs3755920	T	C	2966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=-0.033;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:86,144:0.63:230
chr4	1244267	rs2291199	A	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr4	1244416	rs1732115	A	G	4977.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	1244879	rs1564508	A	G	8708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=-1.583;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:321,430:0.57:751
chr4	1291640	rs2293633	T	C	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:82,106:0.56:188
chr4	1291711	rs2293634	T	G	6573.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:321,326:0.50:647
chr4	1291791	rs2293635	A	G	7190.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:405,375:0.48:780
chr4	1303682	rs13112706	G	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr4	1317192	rs2141656	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr4	1330759	rs1128427	T	C	10482.77	.	AC=1;AF=0.500;AN=2;DB;DP=968;set=Intersection	GT:AD:AF:DP	0/1:435,527:0.55:962
chr4	1332175	rs13147602	A	G	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr4	1343405	rs2276903	T	C	6805.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:222,334:0.60:556
chr4	1343720	rs11247994	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr4	1348691	rs33989352	T	TG	1992.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=3.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=0.723;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:140,97:0.41:237
chr4	1348806	rs3903127	A	C	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr4	1369093	rs11941200	CT	GG	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;JOINED;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr4	1369885	rs11724369	G	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:108,70:0.39:178
chr4	1373699	rs112142388	C	CTTT	494.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr4	1373701	rs56108910	C	G	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=6.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.95;ReadPosRankSum=2.390;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr4	1373751	rs35735964	G	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:58,69:0.54:127
chr4	1374695	rs28614045	C	A	7341.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:273,353:0.56:626
chr4	1374774	rs28522910	C	T	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:96,91:0.49:187
chr4	1374789	rs28733902	A	G	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:55,67:0.55:122
chr4	1377615	rs9996817	A	G	4345.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:148,211:0.59:359
chr4	1388350	.	G	GTGCCCATGTGGAGTGCCCGCCTGCTCACACA	14638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DP=961;ExcessHet=3.0103;FS=4.104;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-7.348;QD=21.43;ReadPosRankSum=5.561;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:370,313:0.46:683
chr4	1388413	rs78309237	T	C	14888.77	.	AC=1;AF=0.500;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	0/1:442,383:0.46:825
chr4	1388429	rs79298048	G	A	9425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-4.005;QD=11.18;ReadPosRankSum=2.870;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:434,409:0.49:843
chr4	1388583	rs9328733	A	G	9733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-5.726;QD=16.50;ReadPosRankSum=3.243;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:260,330:0.56:590
chr4	1388625	.	C	CACGTGCCGATGCGGA	8701.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.013;ClippingRankSum=0.000;DP=513;ExcessHet=3.0103;FS=2.436;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-7.443;QD=17.13;ReadPosRankSum=-3.060;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:277,231:0.45:508
chr4	1388631	.	C	CGCCTGCTCACACGTGCCG	6604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.636;ClippingRankSum=0.000;DP=472;ExcessHet=3.0103;FS=3.301;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-8.224;QD=14.14;ReadPosRankSum=-2.590;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:282,185:0.40:467
chr4	1388635	rs74518227	T	C	4306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-9.588;QD=10.43;ReadPosRankSum=-2.833;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:277,136:0.33:413
chr4	1389101	rs71614971	A	G	12686.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=2.194;MLEAC=2;MLEAF=1.000;MQ=59.08;MQRankSum=-0.445;QD=34.95;ReadPosRankSum=0.463;SOR=0.542;set=HC	GT:AD:AF:DP	1/1:3,360:0.99:363
chr4	1389156	rs71614972	T	C	10725.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=2.661;MLEAC=2;MLEAF=1.000;MQ=59.61;MQRankSum=0.213;QD=36.11;ReadPosRankSum=9.468;SOR=0.501;set=HC	GT:AD:AF:DP	1/1:52,245:0.82:297
chr4	1389161	rs71614973	A	G	11107.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=3.479;MLEAC=2;MLEAF=1.000;MQ=59.55;MQRankSum=0.023;QD=35.15;ReadPosRankSum=8.706;SOR=0.532;set=HC	GT:AD:AF:DP	1/1:52,264:0.84:316
chr4	1397297	rs11945310	T	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr4	1397611	rs13133264	A	C	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:200,218:0.52:418
chr4	1619865	rs11722375	T	C	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:53,64:0.55:117
chr4	1642928	.	G	GCGGCA	1073	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=23;MQ=59.21;NF=18;NR=6;PP=1073;QD=48.3792813475;SC=GCAGGTGCCGGGCCGTGGCCC;SbPval=0.92;Source=Platypus;TC=57;TCF=35;TCR=22;TR=24;WE=1642936;WS=1642920;set=Platypus	GT:AD:AF:DP	1/0:33,24:0.42:57
chr4	1645758	rs62286258	C	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr4	1645774	rs9997029	T	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr4	1645884	rs9994288	A	G	4860.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:258,254:0.50:512
chr4	1646017	rs4865428	C	G	5508.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:289,279:0.49:568
chr4	1656801	rs62287700	A	C	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:208,185:0.47:393
chr4	1657281	rs79735962	G	A	5584.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:197,269:0.58:466
chr4	1659128	rs56214302	T	C	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:98,100:0.51:198
chr4	1698183	rs798719	C	T	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr4	1713589	rs144049579	T	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.818;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr4	1719294	rs2236786	T	C	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:187,154:0.45:341
chr4	1719572	rs798751	A	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr4	1719817	rs712983	A	G	61.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.37;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	1720757	rs798754	A	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr4	1720824	rs798755	A	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:52,63:0.55:115
chr4	1721002	rs115285310	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr4	1725071	rs1665361	A	G	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:54,106:0.66:160
chr4	1725651	rs3099555	T	C	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr4	1725685	rs41286673	C	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr4	1729347	rs1793997	AT	GA	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;JOINED;set=Intersection	GT:AD:AF:DP	0/1:87,103:0.54:190
chr4	1729425	rs2592828	C	G	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:141,180:0.56:321
chr4	1729556	rs34205238	G	A	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:109,103:0.49:212
chr4	1730215	rs798757	C	G	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:193,200:0.51:393
chr4	1730299	rs798759	A	G	5759.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:267,290:0.52:557
chr4	1732230	rs3819376	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr4	1732573	rs146419121	GGGGT	G	1786.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chr4	1732695	rs4577642	G	C	5159.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:289,269:0.48:558
chr4	1737071	rs17681032	C	A	2524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=1.227;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:95,125:0.57:220
chr4	1737404	rs34859791	C	CCT	7366.73	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:234,196:0.46:430
chr4	1737585	rs11729657	T	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:54,59:0.52:113
chr4	1739592	rs2305188	A	G	6039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=2.224;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:238,301:0.56:539
chr4	1741325	rs2077363	A	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr4	1741533	rs140089579	CCGTCCCCATCCCCCTCGCCATCCT	C	4495.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:134,131:0.49:265
chr4	1741663	rs111894970	G	A	13663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=1318;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.410;QD=10.44;ReadPosRankSum=1.473;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:615,694:0.53:1309
chr4	1741740	rs2249143	G	A	9772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.306;ClippingRankSum=0.000;DB;DP=889;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.530;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:417,469:0.53:886
chr4	1742400	rs4865463	T	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	1746844	rs8389	A	T	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:89,111:0.56:200
chr4	1795321	rs4450996	C	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.825;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr4	1795333	rs17879199	C	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=1.098;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr4	1800928	.	A	G	96.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr4	1805296	rs3135883	G	A	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	1806012	rs377096563	TG	T	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.131;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:118,28:0.19:146
chr4	1806834	rs4865476	G	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	1807894	rs7688609	G	A	18949.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,740:1.00:740
chr4	1809127	rs34562534	CGT	C	2500.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;QD=31.65;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	1818594	rs9328763	C	T	10851.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.21;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr4	1834666	rs140729898	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr4	1954945	rs489550	A	G	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr4	1961137	rs474235	G	A	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	1976530	rs150150439	C	T	3421.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:250,178:0.42:428
chr4	1985257	rs553148	G	A	5608.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:206,266:0.56:472
chr4	1985587	rs1139902	G	A	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.959;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:78,61:0.44:139
chr4	1988188	rs3034718	C	CCT	9928.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	1988193	rs1077020	T	C	9515.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	1988257	rs572770	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	1994102	rs1116585	G	A	10204.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr4	2009095	rs382441	C	T	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	2010831	rs231189	G	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	2044128	rs570712	C	T	4062.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr4	2044311	rs7654492	C	A	458.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.451;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=12.632;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.85;ReadPosRankSum=-1.516;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr4	2158102	rs34241266	CT	C	1524.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=6.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=0.101;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:12,106:0.90:118
chr4	2158273	rs3216822	GGA	G	1804.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.169;QD=15.83;ReadPosRankSum=1.022;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:65,49:0.43:114
chr4	2158352	rs137954994	TCTC	T	523.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr4	2158408	rs428361	C	T	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	2175733	rs2022302	A	G	6545.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:277,336:0.55:613
chr4	2175791	rs2022343	TC	CG	6677.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;JOINED;set=Intersection	GT:AD:AF:DP	0/1:132,171:0.56:303
chr4	2176351	rs12647917	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr4	2176454	rs9328764	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr4	2176506	rs6822665	C	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr4	2176551	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=1.679;SOR=2.258;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr4	2178108	rs6599411	C	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr4	2178127	rs6599412	T	G	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr4	2179074	rs6810845	A	G	4346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=0.669;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:201,217:0.52:418
chr4	2179086	rs6816862	T	C	3872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=1.093;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:192,197:0.51:389
chr4	2181016	rs35787308	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr4	2181080	rs6830513	T	C	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-2.086;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:22,41:0.65:63
chr4	2181276	rs35024704	G	T	532.90	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr4	2181313	rs6820291	C	G	70.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.17;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	2194901	rs10015921	A	C	1591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-1.461;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:79,81:0.51:160
chr4	2194946	rs10011549	C	T	2203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=-0.393;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:86,61:0.41:147
chr4	2194953	rs10002583	G	A	2176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-0.303;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:88,61:0.41:149
chr4	2195024	rs10018786	T	G	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=1.783;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:55,44:0.44:99
chr4	2195089	rs10018882	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.68;ReadPosRankSum=-0.944;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	2233709	rs11937432	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr4	2251893	rs61789367	G	A	2995.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:128,151:0.54:279
chr4	2252845	rs2233042	C	T	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:78,86:0.52:164
chr4	2252980	rs2071658	T	G	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=3.096;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:97,85:0.47:182
chr4	2256798	rs2236999	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr4	2260812	rs28619238	T	C	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr4	2262191	rs2269487	A	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:66,77:0.54:143
chr4	2306053	rs661301	A	G	9944.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr4	2306259	rs17768776	C	T	20722.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	1/1:0,772:1.00:772
chr4	2322039	rs113929105	G	GC	9230.73	.	AC=2;AF=1.00;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=31.50;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	2337603	rs599642	GC	TT	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	2341194	rs2071680	T	C	6539.77	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:424,349:0.45:773
chr4	2343349	rs615447	C	G	2762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=0.190;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:172,146:0.46:318
chr4	2357680	rs3135130	C	T	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:137,102:0.43:239
chr4	2428041	.	C	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.12;ReadPosRankSum=2.341;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr4	2428094	rs2269494	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr4	2438492	rs1203763	T	C	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr4	2439670	rs1203762	A	G	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:127,159:0.56:286
chr4	2439701	rs1881185	G	A	6551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.276;QD=10.94;ReadPosRankSum=0.695;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:268,331:0.55:599
chr4	2439756	rs5855731	C	CT	17027.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.879;QD=18.02;ReadPosRankSum=0.941;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:442,503:0.53:945
chr4	2444931	rs1203814	A	G	9176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=1112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=3.844;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:617,494:0.44:1111
chr4	2446725	rs11734990	C	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	2451694	rs3108494	T	C	19355.77	.	AC=2;AF=1.00;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	1/1:2,753:1.00:755
chr4	2452791	rs5855732	AC	A	6415.73	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:165,231:0.58:396
chr4	2452933	rs3888113	T	C	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr4	2460803	rs704346	A	G	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:85,99:0.54:184
chr4	2461888	rs3135152	A	G	14659.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr4	2464179	rs3135150	A	G	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	2502299	rs55745322	A	ATT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	2502518	rs35315554	A	G	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-1.400;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:61,58:0.49:119
chr4	2513620	rs3128839	G	A	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.50;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	2513624	rs4974709	A	G	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.250;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:76,85:0.53:161
chr4	2513842	rs2269490	A	G	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	2698364	rs3733215	C	T	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:52,69:0.57:121
chr4	2717690	rs2295499	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr4	2721811	rs556203	C	T	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:138,88:0.39:226
chr4	2743999	rs232712	A	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	2744087	rs2269495	G	A	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr4	2746285	rs13145281	A	C	6711.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:356,349:0.50:705
chr4	2746307	rs11728346	A	C	16391.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr4	2822289	rs2239727	C	A	7081.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr4	2822467	rs231402	G	T	6548.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr4	2826218	rs34274570	C	CA	1879.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=39.99;SOR=2.352;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	2826400	rs3213501	T	C	18096.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:2,702:1.00:704
chr4	2828771	rs1794395	T	G	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	2829077	rs2269485	T	C	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	2829478	rs13137906	G	C	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	2831383	rs231399	T	G	26515.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=1071;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.52;ReadPosRankSum=-1.967;SOR=0.385;set=HC	GT:AD:AF:DP	1/1:3,1036:1.00:1039
chr4	2833966	rs231396	G	A	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr4	2901349	rs2071695	A	G	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr4	2906453	rs2239728	T	G	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:81,88:0.52:169
chr4	2906707	rs4961	G	T	3486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-2.026;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:123,168:0.58:291
chr4	2916762	rs4963	C	G	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:127,164:0.56:291
chr4	2928125	rs1263345	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,49:0.51:97
chr4	2928413	rs4964	T	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:123,68:0.36:191
chr4	2933271	rs1263348	G	A	4105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=3.105;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:272,214:0.44:486
chr4	2934308	rs1263349	G	A	9998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DB;DP=1104;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=1.627;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:570,518:0.48:1088
chr4	2935251	rs2301374	T	A	5536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=1.338;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:340,298:0.47:638
chr4	2941418	rs1263337	G	A	6735.77	.	AC=1;AF=0.500;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	0/1:382,352:0.48:734
chr4	2953102	rs74774684	T	C	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr4	2965874	.	AC	A	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=4.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.003;SOR=0.335;set=HC	GT:AD:AF:DP	0/1:132,24:0.15:156
chr4	3029588	rs2857844	G	A	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-2.137;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:68,98:0.59:166
chr4	3039150	rs1801058	T	C	6330.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr4	3039310	.	CCG	C	155.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,11:0.20:55
chr4	3039311	rs2071689	C	T	939.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:11,44:0.80:55
chr4	3040279	rs11451355	G	GA	1195.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.020;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:8,66:0.89:74
chr4	3076603	rs374076986	CCAGCAG	C,CCAGCAGCAGCAG	5327.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=367;set=Intersection	GT:AF:DP	1/2:0.62,0.36:208
chr4	3076672	.	ACCG	A	686	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=4;HapScore=1;MGOF=31;MMLQ=24;NF=5;NR=58;PP=686;QD=11.0476190476;SC=AACAGCCGCCACCGCCGCCGC;SbPval=0.85;Source=Platypus;TC=108;TCF=13;TCR=95;TR=63;WE=3076685;WS=3076662;set=Platypus	GT:AD:AF:DP	0/1:45,63:0.58:108
chr4	3137674	rs363075	G	A	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:106,92:0.46:198
chr4	3144441	rs363107	A	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,40:0.52:77
chr4	3148570	rs35892913	G	A	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-0.790;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:200,129:0.39:329
chr4	3148653	rs1143646	T	G	3947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=2.012;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:198,198:0.50:396
chr4	3180021	rs363096	T	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr4	3210446	.	T	TA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.121;QD=1.26;ReadPosRankSum=1.668;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr4	3219613	rs2857790	A	C	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	3230804	rs2530598	A	C	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	3240526	rs2858081	A	G	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	3255258	rs2798227	A	G	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:143,145:0.50:288
chr4	3255292	rs2798226	C	T	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr4	3257373	rs3135173	T	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr4	3257593	rs362287	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:67,71:0.51:138
chr4	3263138	rs3095073	G	A	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:163,174:0.52:337
chr4	3265479	rs3095078	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr4	3265710	rs3095077	C	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:73,83:0.53:156
chr4	3317873	rs16844147	C	G	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:101,95:0.48:196
chr4	3318413	rs2236052	A	G	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	3318726	rs16844152	A	T	3716.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:182,182:0.50:364
chr4	3319805	.	C	CGGAGGCCCGGCCTCCTCACTTAGCAGCCTCAGCGT	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-2.814;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr4	3344680	rs61748736	G	A	3386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=1.542;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:146,170:0.54:316
chr4	3344891	rs2073286	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr4	3372263	rs6826720	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr4	3443931	rs13108218	A	G	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:77,86:0.53:163
chr4	3443993	rs28720738	C	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr4	3444593	rs2073504	G	A	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:150,130:0.46:280
chr4	3444690	rs73195104	G	A	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:86,143:0.62:229
chr4	3445745	rs4690097	C	T	4826.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:282,254:0.47:536
chr4	3446091	rs3748034	G	T	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=1.074;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:106,91:0.46:197
chr4	3446132	rs1987546	C	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr4	3446751	rs3752439	T	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:72,71:0.50:143
chr4	3446820	rs3752441	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr4	3447243	rs16844383	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr4	3449886	rs28468427	G	A	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:112,66:0.37:178
chr4	3449915	rs114303452	A	G	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:88,50:0.36:138
chr4	3465177	rs71180187	CGG	C	392.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.555;QD=28.07;ReadPosRankSum=-0.874;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr4	3475107	rs2344208	G	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr4	3475252	rs4325970	T	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	3475390	rs77051823	G	A	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=0.273;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr4	3478013	rs2699424	G	A	2571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.154;MLEAC=1;MLEAF=0.500;MQ=63.60;MQRankSum=8.344;QD=18.91;ReadPosRankSum=-5.502;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:69,67:0.49:136
chr4	3478020	rs114112298	C	T	2756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=4.045;MLEAC=1;MLEAF=0.500;MQ=63.41;MQRankSum=8.311;QD=19.14;ReadPosRankSum=-4.371;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:74,70:0.49:144
chr4	3478051	rs2699425	T	C	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:143,138:0.49:281
chr4	3478323	rs2699426	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr4	3487151	rs916189	A	G	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-1.786;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:135,90:0.40:225
chr4	3487237	rs2006791	A	G	4351.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:291,230:0.44:521
chr4	3494430	rs6830812	G	A	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:106,91:0.46:197
chr4	3495095	rs9684786	G	A	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:188,153:0.45:341
chr4	3495283	rs11733064	C	G	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:116,96:0.45:212
chr4	3498448	rs3135164	T	C	8110.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr4	3501802	rs10805009	G	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	3501835	rs2858035	C	A	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	3501849	rs2699409	T	C	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	3501873	rs2699408	T	C	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	3501924	rs2858036	A	G	9099.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr4	3502163	rs2858037	A	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	3502303	rs2071700	G	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	3514695	rs6789	A	G	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:2,188:0.99:190
chr4	3514938	rs1741553	A	G	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	3516689	rs2515967	T	C	7550.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr4	3516742	rs1794442	A	G	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	3517732	rs1794444	G	C	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	3521754	rs1799746	G	GT	1175.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:84,44:0.34:128
chr4	3521939	rs1741547	T	A	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	3589623	rs10937959	G	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr4	3589669	.	G	GACTTCCTGGTGCACCTGC	1312.73	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:165,30:0.15:195
chr4	3589689	rs7657417	C	A	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:195,125:0.39:320
chr4	3589719	rs59190481	CA	C	9755.73	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:155,277:0.64:432
chr4	3589846	rs7672828	T	C	2951.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:314,170:0.35:484
chr4	3590537	rs73199384	G	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-1.067;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr4	3590549	rs73793633	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr4	3590577	rs73793634	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:55,21:0.28:76
chr4	3590588	rs73199385	A	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:67,26:0.28:93
chr4	3590683	rs62272966	T	G	6290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=0.420;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:310,174:0.36:484
chr4	3590711	rs62272967	G	T	6917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=0.052;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:313,184:0.37:497
chr4	3590730	rs62272968	G	A	6166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-2.266;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:269,171:0.39:440
chr4	3590817	rs62272969	T	C	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:173,97:0.36:270
chr4	3590823	rs72180705	GACAC	G	3539.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:134,107:0.44:241
chr4	3590878	rs62272970	C	T	5961.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:389,178:0.31:567
chr4	3590911	rs34447251	A	C	6431.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:435,205:0.32:640
chr4	3591015	rs62272971	A	C	4503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.133;ClippingRankSum=0.000;DB;DP=1014;ExcessHet=3.0103;FS=2.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-1.066;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:662,312:0.32:974
chr4	3591049	rs62272972	C	T	14514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=1226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.377;QD=11.89;ReadPosRankSum=-0.089;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:800,421:0.34:1221
chr4	3591069	rs62272973	C	T	14700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=1203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.347;QD=12.27;ReadPosRankSum=0.451;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:773,425:0.35:1198
chr4	3768777	rs149641647	C	T	8267.77	.	AC=1;AF=0.500;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	0/1:556,432:0.44:988
chr4	3769789	rs11269124	G	GGGGGAGCTTTCCCAGAGACCC	523.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=14.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=1.148;SOR=3.278;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr4	4190507	.	C	CTTG	128.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=1.078;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-11.694;QD=0.79;ReadPosRankSum=-1.556;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:148,14:0.09:162
chr4	4190508	.	C	T	137.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-11.921;QD=0.82;ReadPosRankSum=-1.055;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:152,15:0.09:167
chr4	4190511	.	G	GTCACTTGTTA	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-11.995;QD=0.95;ReadPosRankSum=-0.581;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:154,15:0.09:169
chr4	4190792	rs2920255	A	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr4	4199634	rs2916414	A	T	4663.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:177,231:0.57:408
chr4	4204299	rs2920182	T	C	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:88,105:0.54:193
chr4	4228008	rs1811445	A	G	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-1.865;QD=20.85;ReadPosRankSum=-0.705;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr4	4228028	rs55839893	G	T	631.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-2.121;QD=18.05;ReadPosRankSum=1.636;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr4	4228029	rs36055674	A	AAAG	622.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-2.121;QD=17.79;ReadPosRankSum=1.636;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr4	4239516	rs62286913	C	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-4.130;QD=5.09;ReadPosRankSum=1.956;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr4	4239539	rs62286914	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-3.240;QD=1.69;ReadPosRankSum=0.888;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:114,14:0.11:128
chr4	4249297	rs2916469	C	T	10343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=-0.331;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:210,261:0.55:471
chr4	4249300	rs2916468	T	C	10560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.60;ReadPosRankSum=-1.261;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:213,276:0.56:489
chr4	4249414	rs2980101	AT	GC	15604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.10;ReadPosRankSum=2.718;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:310,396:0.56:706
chr4	4249483	rs2916466	C	T	9668.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.35;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr4	4249484	rs2916465	A	C	2992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-2.920;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:112,149:0.57:261
chr4	4249884	rs6854167	G	T	2727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.840;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:147,137:0.48:284
chr4	4249909	rs2272746	C	T	4848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.948;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.893;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:221,250:0.53:471
chr4	4249974	rs2272745	C	A	5841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.503;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-0.758;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:360,307:0.46:667
chr4	4250133	rs2272744	G	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr4	4275976	rs11723469	A	C	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=44.01;SOR=1.578;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	4275986	rs11723471	A	C	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=40.70;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	4276021	rs12639962	C	G	1934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-1.488;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:101,98:0.49:199
chr4	4276132	rs7376390	T	C	18996.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr4	4283676	rs2272738	G	A	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:226,219:0.49:445
chr4	4285221	rs2980214	A	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	4285265	rs4688927	T	A	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.782;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=0.118;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:53,43:0.45:96
chr4	4285545	rs2916439	A	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr4	4304337	rs2916382	C	T	11081.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr4	4304522	rs2920217	A	C	4513.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:156,218:0.58:374
chr4	4315010	rs28458962	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.755;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr4	4322275	rs873923	A	G	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=3.566;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr4	4393068	rs3792686	T	C	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	4425422	rs10675705	C	CAG	883.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr4	4861609	rs186861426	G	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-0.134;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr4	4862125	rs149370601	AGGGGGCCGGGT	A	1492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.354;QD=12.76;ReadPosRankSum=0.503;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:75,42:0.36:117
chr4	4864230	rs10014077	A	G	1803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-0.934;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:143,96:0.40:239
chr4	4864299	rs10000804	G	A	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:134,124:0.48:258
chr4	4864404	rs33929633	CT	C	4160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=743;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=4.185;QD=5.79;ReadPosRankSum=0.538;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:415,303:0.42:718
chr4	4864876	rs8670	C	T	2900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-0.909;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:172,150:0.47:322
chr4	5016841	rs6847131	G	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	5017146	rs67449859	A	AT	397.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.16;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	5017149	.	T	TTCATTTC	313	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=2;HapScore=4;MGOF=8;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=313;QD=85.5;SC=AAATTTCATTTCCATAATTTT;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=4;WE=5017158;WS=5017139;set=Platypus	GT:AD:AF:DP	1/1:3,4:0.57:7
chr4	5017150	.	C	A	74	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=3;HapScore=4;MGOF=8;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=74;QD=27.1928031368;SC=AATTTCATTTCCATAATTTTC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=4;WE=5017158;WS=5017139;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr4	5017150	rs34659865	C	CATTTCA	397.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	5018702	rs11724788	G	A	7036.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	5020926	rs201209430	T	TTC	867.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=0.433;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:85,71:0.46:156
chr4	5053556	rs75607574	G	A	5505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.978;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=0.834;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:307,280:0.48:587
chr4	5053674	rs10222952	C	T	7305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=0.988;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:331,374:0.53:705
chr4	5128641	rs11726208	A	G	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.755;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=0.313;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:34,39:0.53:73
chr4	5128650	rs895679	T	C	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.47;SOR=1.636;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	5418485	rs2301857	C	T	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:184,132:0.42:316
chr4	5418499	rs115033648	G	A	4200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=4.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.752;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:154,209:0.58:363
chr4	5418539	rs168985	C	T	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:252,195:0.44:447
chr4	5448293	.	C	CA	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.578;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:123,44:0.26:167
chr4	5461801	rs2301856	A	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:113,65:0.37:178
chr4	5500511	rs13116133	A	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	5500907	rs75777002	A	T	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr4	5528115	.	A	AT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=5.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-0.555;SOR=1.400;set=HC	GT:AD:AF:DP	0/1:83,20:0.19:103
chr4	5576270	rs16837475	G	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.871;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr4	5577884	rs6840591	T	C	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	5617295	rs10025164	T	C	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:132,192:0.59:324
chr4	5617369	rs10032860	G	T	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:40,71:0.64:111
chr4	5620515	rs28379106	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr4	5624223	rs60896170	C	T	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:136,168:0.55:304
chr4	5624670	rs730469	T	C	3585.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:180,179:0.50:359
chr4	5630470	rs370246795	T	TAA	434.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr4	5642161	rs751841	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	5642274	rs13131655	T	C	6518.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr4	5642612	rs73198184	C	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr4	5667323	rs140800339	G	A	5098.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:234,256:0.52:490
chr4	5686924	rs957727	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr4	5686967	rs957726	C	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,65:0.60:109
chr4	5687263	rs998092	A	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr4	5687281	rs960055	C	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr4	5690902	rs4689278	T	C	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:191,152:0.44:343
chr4	5693112	rs35705473	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.91;ReadPosRankSum=0.849;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	5696031	rs55801084	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=2.346;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr4	5743509	rs6446393	C	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.73;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	5743509	.	CTAT	TTAC,TTAT	93	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=3;MMLQ=27;MQ=60.0;NF=4,7;NR=4,10;PP=33,93;QD=10.8084843578;SC=AGATGATGAACTATACCAGAA;SbPval=0.45;Source=Platypus;TC=17;TCF=7;TCR=10;TR=8,17;WE=5743520;WS=5743499;set=Platypus	GT:AF:DP	0/1:0.47:17
chr4	5743512	rs6414624	T	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=1.357;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr4	5747072	rs2286343	C	T	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	5749784	rs4689312	G	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr4	5749804	rs4689311	G	A	1908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=0.280;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:68,51:0.43:119
chr4	5749814	rs4688964	C	T	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=0.422;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:87,68:0.44:155
chr4	5749904	rs4688963	T	C	3745.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:345,213:0.38:558
chr4	5749961	rs4688962	G	C	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:265,181:0.41:446
chr4	5750084	rs4688961	A	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr4	5755373	rs7660793	G	C	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr4	5755542	rs2302075	C	A	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:120,102:0.46:222
chr4	5757932	rs5855888	GA	G	1401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.914;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.731;QD=7.79;ReadPosRankSum=2.806;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:78,102:0.57:180
chr4	5757944	rs4642178	A	C	2741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.050;QD=11.57;ReadPosRankSum=0.840;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:107,130:0.55:237
chr4	5759860	rs6828631	A	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr4	5795412	rs11737221	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr4	5798627	rs2291152	G	A	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:122,112:0.48:234
chr4	5803633	rs2306400	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr4	5803669	rs1031919	T	C	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	5803829	rs3214940	AC	A	2625.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:83,104:0.56:187
chr4	5803903	rs2306399	A	G	1256.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.609;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:46,62:0.57:108
chr4	5803903	.	AC	GT	370	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=27;MQ=60.0;NF=9;NR=19;PP=370;QD=15.1238526737;SC=GATGTCAGATACTGTGAATTT;SbPval=0.64;Source=Platypus;TC=56;TCF=19;TCR=37;TR=28;WE=5803912;WS=5803893;set=Platypus	GT:AD:AF:DP	0/1:28,28:0.50:56
chr4	5803904	rs1031918	C	T	3909.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.24;SOR=1.222;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	5806366	rs1552057	T	C	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-1.053;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:53,43:0.45:96
chr4	5809868	.	C	CCCTCCCTCCCTCCGTCTCTCCCTTCCTTCCTTCCTT	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=-0.824;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr4	5812195	rs2279250	A	G	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	5812566	rs2279247	A	G	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:124,111:0.47:235
chr4	5812778	rs2291151	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr4	5827503	rs10605297	GCA	G	599.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr4	5830414	rs6818391	T	C	8805.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr4	5837871	rs3815264	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr4	5838513	rs12331	C	G	3092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-1.879;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:403,190:0.32:593
chr4	5841577	rs73208608	G	A	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	5863032	rs13130069	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr4	5925186	rs4348041	G	A	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	5969113	rs9997727	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:63,44:0.41:107
chr4	5969235	rs7690750	A	G	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:140,116:0.45:256
chr4	5969252	rs7690889	A	G	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:126,110:0.47:236
chr4	5969292	rs6446420	C	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,50:0.48:105
chr4	5969303	rs6446421	T	A	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,46:0.48:96
chr4	5969364	rs6446422	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=1.647;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	5975538	rs16837960	G	A	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:189,164:0.46:353
chr4	5990599	rs751240	T	C	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:230,170:0.42:400
chr4	5990868	rs143859826	CCT	C	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=3.426;QD=0.86;ReadPosRankSum=0.137;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:478,81:0.14:559
chr4	6031632	rs10461053	T	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr4	6050724	.	G	GT	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.672;QD=0.94;ReadPosRankSum=1.620;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:167,40:0.19:207
chr4	6114420	rs1543965	GCC	TAA	32907.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,727:1.00:727
chr4	6279047	rs10937714	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr4	6292751	.	G	GTGGCAGGGGCA	1057	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=23;MQ=60.0;NF=3;NR=0;PP=1057;QD=366.666666667;SC=GAGAGTGGGCGTGGCGCGATG;SbPval=1.0;Source=Platypus;TC=17;TCF=15;TCR=2;TR=3;WE=6292766;WS=6292746;set=Platypus	GT:AD:AF:DP	1/0:14,3:0.18:17
chr4	6292755	rs55640037	C	CAGGGGCATG	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=-0.770;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr4	6292758	.	G	A	903	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=23;MQ=60.0;NF=13;NR=0;PP=903;QD=72.136247119;SC=GGCGTGGCGCGATGTCCTCTT;SbPval=1.0;Source=Platypus;TC=27;TCF=25;TCR=2;TR=13;WE=6292766;WS=6292746;set=Platypus	GT:AD:AF:DP	1/0:14,13:0.48:27
chr4	6292758	rs56102017	G	GCA	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.09;ReadPosRankSum=-0.500;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr4	6292799	rs5018647	A	C	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr4	6292818	rs5018648	C	G	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:87,95:0.52:182
chr4	6292909	rs9998519	C	T	12525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.86;ReadPosRankSum=0.749;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:256,317:0.55:573
chr4	6292915	rs10010131	A	G	12897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.35;ReadPosRankSum=0.285;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:264,340:0.56:604
chr4	6293446	rs13101355	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr4	6293474	rs13147655	A	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr4	6293696	rs1801213	C	G	3877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-1.296;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:172,197:0.53:369
chr4	6293802	rs7655482	T	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr4	6302519	rs1801212	G	A	27645.77	.	AC=2;AF=1.00;AN=2;DB;DP=1078;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,1059:1.00:1059
chr4	6302707	rs1801206	C	T	12292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=1203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=1.007;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:560,618:0.52:1178
chr4	6303022	rs1801214	C	T	7745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=773;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-2.075;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:376,386:0.51:762
chr4	6303354	rs734312	G	A	7510.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:286,363:0.56:649
chr4	6303955	rs1046314	G	A	6034.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:286,296:0.51:582
chr4	6304087	rs1046316	A	G	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:221,169:0.43:390
chr4	6304242	rs1046317	T	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr4	6325018	rs3796402	A	T	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	6325086	rs3796403	G	A	7454.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr4	6335186	rs4689405	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	6335203	rs10937722	C	T	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=-0.066;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:27,67:0.71:94
chr4	6374189	rs6837903	A	G	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=2.336;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	6374230	rs35520578	C	CA	8164.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	6374493	rs34231840	G	A	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	6377530	rs4688997	C	G	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	6377534	rs4688998	A	G	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.25;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	6377713	rs4234738	G	C	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	6384369	rs6845693	C	G	1011.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.73;MQRankSum=0.581;QD=33.73;ReadPosRankSum=2.446;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr4	6384396	.	TCTCTCTCACACACACA	T	273.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr4	6415803	.	ATGTGTG	A,ATG	160.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=64;set=Intersection	GT:AF:DP	0/1:0.36:22
chr4	6536979	rs13141184	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:78,60:0.43:138
chr4	6578487	rs4689485	A	G	3055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-0.564;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:146,152:0.51:298
chr4	6594827	rs10937747	A	G	9479.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr4	6594947	rs2301796	A	C	7154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=894;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=0.283;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:511,379:0.43:890
chr4	6596360	rs2301795	G	A	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:128,140:0.52:268
chr4	6600012	rs2301790	A	G	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:218,180:0.45:398
chr4	6602255	rs2301789	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:63,39:0.38:102
chr4	6602516	rs12639813	A	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr4	6606864	rs2301788	A	G	6445.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:426,344:0.45:770
chr4	6607046	rs144650979	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr4	6611813	rs4689487	T	C	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:107,88:0.45:195
chr4	6619052	rs4689488	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	6619165	rs4689489	A	G	11715.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr4	6619204	rs4689490	G	A	15891.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr4	6623032	rs4234768	G	T	17804.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.688;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.88;ReadPosRankSum=-0.876;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:1,687:1.00:688
chr4	6642641	rs115295191	C	T	5097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.343;QD=8.90;ReadPosRankSum=-2.570;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:314,259:0.45:573
chr4	6698500	rs113431497	C	CTGAGCCTGAA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	6698664	rs11737783	G	A	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.898;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:100,96:0.49:196
chr4	6698667	rs11734898	T	C	6983.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.57;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	6698706	rs11733989	A	C	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	6718775	rs3172604	G	T	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	6955922	rs4484301	C	G	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	6956134	rs11732898	T	C	9701.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr4	6968942	rs9291126	C	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	6998262	.	TA	T	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.141;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr4	7002803	rs2301817	C	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	7027041	rs6834102	C	T	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	7044357	rs871133	A	G	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	7044380	rs871134	C	T	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	7044600	rs2359010	G	A	4108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=-1.400;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:331,224:0.40:555
chr4	7045657	rs6842659	C	A	190.88	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr4	7064003	rs11422620	A	AC	6083.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	7064214	rs9291128	T	G	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.53;QD=42.74;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	7064218	rs60881938	TA	T	1159.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=63.80;MQRankSum=7.299;QD=12.08;ReadPosRankSum=-1.348;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:21,75:0.78:96
chr4	7064219	rs28636568	A	T	80.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=63.93;MQRankSum=-7.288;QD=0.84;ReadPosRankSum=1.334;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:75,21:0.22:96
chr4	7064220	rs376145748	TATATA	T	1074.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=63.90;MQRankSum=8.006;QD=11.08;ReadPosRankSum=-1.084;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:26,71:0.73:97
chr4	7064243	rs6812318	C	T	2119.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.506;MLEAC=2;MLEAF=1.000;MQ=65.66;MQRankSum=3.501;QD=20.58;ReadPosRankSum=-0.682;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:7,96:0.93:103
chr4	7064277	rs4689585	C	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	7066052	rs2359011	TA	GC	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	7069606	rs2276969	G	A	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	7069804	rs3822270	C	A	26224.77	.	AC=2;AF=1.00;AN=2;DB;DP=1041;set=Intersection	GT:AD:AF:DP	1/1:0,1014:1.00:1014
chr4	7069901	rs3822269	T	C	13826.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr4	7312145	rs11942816	T	C	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	7398194	rs9991834	A	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	7434988	rs4318651	A	G	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:108,87:0.45:195
chr4	7435013	rs11721763	G	A	5797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.47;ReadPosRankSum=2.210;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:124,146:0.54:270
chr4	7435023	.	G	T	3284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DP=322;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.425;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:151,166:0.52:317
chr4	7435379	rs4689746	A	G	12877.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr4	7435443	rs6843370	G	A	6063.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:215,276:0.56:491
chr4	7435797	rs34136551	G	A	8599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=1009;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-0.237;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:556,447:0.45:1003
chr4	7461661	rs73212545	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr4	7461826	rs10655902	C	CCCA	21582.73	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=44.68;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,483:1.00:483
chr4	7461915	rs12498272	T	A	10099.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=26.17;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,386:1.00:386
chr4	7533191	rs73214626	C	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:92,74:0.45:166
chr4	7533234	rs10007474	C	T	12238.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr4	7655855	rs2285789	C	T	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	7663167	rs2285788	A	T	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:114,154:0.57:268
chr4	7684641	rs4689820	C	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	7684661	rs4689821	CT	AC	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	7691193	rs929264	G	C	3360.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:263,180:0.41:443
chr4	7691419	rs2285785	A	G	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:74,68:0.48:142
chr4	7714490	rs4689833	T	C	4647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.429;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=0.131;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:216,225:0.51:441
chr4	7716932	rs6816604	T	C	37542.77	.	AC=2;AF=1.00;AN=2;DB;DP=1445;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,1438:1.00:1438
chr4	7717012	rs2285781	G	A	28800.77	.	AC=2;AF=1.00;AN=2;DB;DP=1102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,1096:1.00:1096
chr4	7725693	rs2285778	C	T	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr4	7728472	rs2301746	C	T	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=0.745;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:105,77:0.42:182
chr4	7728658	rs2301745	C	T	4267.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:255,223:0.47:478
chr4	7731310	rs1544402	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:117,110:0.48:227
chr4	7731560	rs1076226	T	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,45:0.45:101
chr4	7735215	rs2285775	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr4	7736455	rs6843811	G	A	5963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=1.319;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:247,302:0.55:549
chr4	7737137	rs4689845	G	A	3568.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:187,182:0.49:369
chr4	7737269	rs11307451	TG	T	1447.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:94,53:0.36:147
chr4	7737341	rs4689846	G	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=-1.115;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr4	7738730	rs6840685	A	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.269;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:35,40:0.53:75
chr4	7738775	rs75849760	G	A	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=0.036;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:131,117:0.47:248
chr4	7741851	rs12501485	A	G	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:94,120:0.56:214
chr4	7783163	rs28542374	G	A	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:88,67:0.43:155
chr4	7783172	rs77207711	G	A	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:66,89:0.57:155
chr4	7783470	rs147772990	ACT	A	722.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr4	7802227	rs28406288	G	C	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:207,146:0.41:353
chr4	7820727	rs4447865	T	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	7840561	rs113955695	T	TCA	298.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr4	7857230	rs61742221	C	T	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:145,99:0.41:244
chr4	7870503	rs34264380	C	CA	5549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.787;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=4.603;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.036;QD=15.00;ReadPosRankSum=-0.926;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:189,181:0.49:370
chr4	7940833	.	G	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-1.722;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr4	7940857	rs7695142	A	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:63,68:0.52:131
chr4	7940903	rs7695170	A	G	7302.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:193,193:0.50:386
chr4	7940915	rs7669645	C	T	7757.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:219,221:0.50:440
chr4	7941318	rs60272249	T	C	1782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=4.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.117;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:86,92:0.52:178
chr4	7941346	rs58349148	G	C	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=0.451;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:70,83:0.54:153
chr4	8006928	rs11939078	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	8009759	rs17180256	G	A	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:85,118:0.58:203
chr4	8021592	rs13131680	A	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr4	8031471	rs2385904	A	G	4322.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:184,217:0.54:401
chr4	8031590	rs11942146	T	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:57,50:0.47:107
chr4	8062638	rs6853485	A	C	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:109,108:0.50:217
chr4	8062689	rs6811028	TG	CA	4626.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;JOINED;set=Intersection	GT:AD:AF:DP	0/1:127,121:0.49:248
chr4	8062830	rs16841624	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr4	8062871	rs6853901	A	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr4	8090028	rs11722016	C	T	5614.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:295,275:0.48:570
chr4	8108471	rs13140321	G	A	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	8129176	rs78787587	T	C	7725.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:349,387:0.53:736
chr4	8207083	rs2677605	A	G	1672.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.97;ReadPosRankSum=1.204;SOR=0.275;set=HC	GT:AD:AF:DP	1/1:1,66:0.99:67
chr4	8207154	rs1298878	C	T	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	8211624	rs1712316	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	8214636	rs1712287	T	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	8218915	rs41266525	C	T	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=2.028;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:87,56:0.39:143
chr4	8221058	rs4696782	G	A	11173.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr4	8224414	rs113477900	T	TGTC	844.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=42.24;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	8228627	rs1678299	G	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.72;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	8228632	rs1678300	A	C	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.78;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	8228731	rs1281145	T	C	11380.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr4	8228894	rs1292647	T	C	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr4	8228948	rs55642964	T	C	9648.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr4	8229218	rs1281146	A	G	7499.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr4	8229326	rs1281147	T	C	11293.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr4	8229713	rs1281148	A	G	29706.77	.	AC=2;AF=1.00;AN=2;DB;DP=1124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,1113:1.00:1113
chr4	8229774	rs1281149	C	T	35552.77	.	AC=2;AF=1.00;AN=2;DB;DP=1390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,1373:1.00:1373
chr4	8230070	rs1281150	T	C	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	8230235	rs1281151	T	C	7370.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr4	8233943	rs2276947	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr4	8234381	rs3775905	T	C	10415.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr4	8237096	rs1678260	G	C	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	8238151	rs11603	C	T	13437.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,526:1.00:526
chr4	8242466	rs1281103	A	G	12982.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr4	8242740	rs8153	G	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	8358361	rs3733532	G	A	5963.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:291,294:0.50:585
chr4	8368944	rs12646666	C	T	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr4	8376402	rs7700122	T	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr4	8415982	rs2245515	C	T	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.057;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=3.179;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr4	8451656	.	A	ATTTTCTTTTC	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=1.242;QD=12.97;ReadPosRankSum=-0.545;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	8454639	rs1880024	A	G	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:102,99:0.49:201
chr4	8456701	rs2002860	C	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr4	8473050	rs2631768	G	A	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-0.297;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:33,21:0.39:54
chr4	8582742	rs17844776	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:88,105:0.54:193
chr4	8582856	rs17844777	T	G	4572.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:183,229:0.56:412
chr4	8583312	rs17844778	A	C	9530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=940;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-1.390;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:443,478:0.52:921
chr4	8583475	rs4696848	C	T	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:89,67:0.43:156
chr4	8584448	rs6824455	T	C	12694.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr4	8584472	rs9992205	G	A	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:155,138:0.47:293
chr4	8584493	rs6857501	C	T	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:89,92:0.51:181
chr4	8584511	rs6857510	C	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:68,57:0.46:125
chr4	8594574	rs2302583	T	C	17624.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.28;ReadPosRankSum=1.621;SOR=0.540;set=HC	GT:AD:AF:DP	1/1:3,395:0.99:398
chr4	8594577	rs34964084	C	T	17671.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.53;ReadPosRankSum=1.546;SOR=0.552;set=HC	GT:AD:AF:DP	1/1:3,403:0.99:406
chr4	8594815	rs4411969	T	G	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	8601298	rs11723641	G	A	13922.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr4	8601381	rs7671320	A	G	7292.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.95;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr4	8602793	rs4299567	T	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	8602816	rs4594711	A	G	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	8602884	rs4301095	T	C	8436.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr4	8602935	rs4431213	A	G	13722.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,542:1.00:542
chr4	8605818	rs6852001	C	T	14439.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr4	8607587	rs4696703	G	A	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	8612722	rs72237922	TTCACTCATTCAC	T	1832.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr4	8612789	.	ACTCATTCACTCATTCATTCG	A	5868.73	.	AC=1;AF=0.500;AN=2;DP=375;set=Intersection	GT:AD:AF:DP	0/1:203,159:0.44:362
chr4	8613026	rs3796727	G	A	6847.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	8613152	rs3796726	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	8613908	rs34978619	G	A	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=39.18;SOR=1.761;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	8613917	rs12511563	CG	GT	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=47.79;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	8613961	rs13120023	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	8616179	rs7378066	T	C	10842.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr4	8620023	rs6447885	G	A	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	8620045	rs4444816	A	G	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	8620103	rs7670383	C	T	8750.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr4	8620325	rs4696872	A	G	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	8621194	rs28514374	A	G	13316.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr4	8621392	rs1050465	G	A	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.161;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	8869389	.	G	A	529.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr4	8869587	rs13303225	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	8872977	rs61745347	C	T	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=0.335;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:46,40:0.47:86
chr4	9370908	rs11938651	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	9784542	rs2227851	A	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-7.286;QD=1.65;ReadPosRankSum=1.635;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:61,8:0.12:69
chr4	9784550	rs2227844	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-7.286;QD=1.65;ReadPosRankSum=2.006;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:61,8:0.12:69
chr4	9784631	rs6283	C	T	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	9889448	rs6818572	G	A	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	9892102	rs10939602	T	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	9922167	rs16890979	C	T	8019.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:407,411:0.50:818
chr4	9982191	rs13115193	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:54,48:0.47:102
chr4	9982330	rs13125646	A	G	3381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=1.884;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:244,178:0.42:422
chr4	9998440	rs10939650	C	T	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:152,105:0.41:257
chr4	9998493	rs13113918	A	G	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:138,129:0.48:267
chr4	9998605	rs28592748	T	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr4	10020564	rs2240721	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr4	10020757	rs2240722	A	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,36:0.41:87
chr4	10022981	rs2276961	C	T	1836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-1.017;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:87,95:0.52:182
chr4	10085949	rs2241473	G	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-3.190;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr4	10086015	rs2241474	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr4	10086188	rs2241475	T	G	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr4	10089865	rs734122	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr4	10090178	rs4235349	T	C	15010.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr4	10094671	rs3822247	G	A	7208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=2.312;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:319,371:0.54:690
chr4	10094698	rs3822246	G	A	6683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=788;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=1.122;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:430,356:0.45:786
chr4	10094783	rs3822245	T	C	13321.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:2,524:1.00:526
chr4	10099277	rs41268389	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr4	10099340	rs13441	T	C	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	10100801	rs2241484	T	C	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	10100812	rs2241485	A	G	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	10105797	rs3756223	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr4	10118377	rs11557743	C	G	3493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=3.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=0.682;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:113,174:0.61:287
chr4	10444650	rs3217	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr4	10446385	rs9291410	C	T	10333.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr4	10446906	rs10016022	A	G	14940.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:1,583:1.00:584
chr4	10447985	rs35177766	AT	A	3269.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	10502937	rs2903960	T	G	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	10509699	rs2868941	T	C	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.242;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	10525711	rs148908322	A	AGAG	2706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.988;QD=31.84;ReadPosRankSum=2.474;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:13,72:0.85:85
chr4	10527342	rs2108878	C	T	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	10542058	rs1962796	C	G	10917.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,426:1.00:426
chr4	10566188	rs17382991	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr4	10586376	rs6816045	C	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr4	10586571	rs61759824	G	A	7086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=0.274;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:328,353:0.52:681
chr4	10669522	rs13136927	A	C	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:145,104:0.42:249
chr4	13462516	rs77366135	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr4	13545792	rs9684692	G	T	10460.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr4	13548796	rs2080023	T	G	13448.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.96;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,518:1.00:518
chr4	13578405	rs2052159	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	13582680	.	TA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.950;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr4	13589495	rs13104252	G	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	13606576	rs1971278	A	T	8273.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr4	13615293	rs2109917	C	A	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr4	13629721	rs12499127	G	A	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	15004655	rs7435318	G	A	13406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=1216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=3.205;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:487,656:0.57:1143
chr4	15005604	rs112476821	G	A	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:231,203:0.47:434
chr4	15009232	rs1874207	C	T	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr4	15059987	rs987399	AA	GG	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.96;ReadPosRankSum=1.399;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr4	15443685	rs13108125	T	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr4	15480225	rs9993580	A	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr4	15482477	rs10000250	A	G	2749.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:129,134:0.51:263
chr4	15482809	rs6810461	G	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr4	15513147	rs1058412	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr4	15517756	rs58218122	AT	A	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.190;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	15530124	rs4698395	C	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr4	15538744	rs1558572	T	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr4	15539498	rs1861044	A	G	2687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=1.850;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:90,128:0.59:218
chr4	15568992	rs13121363	T	C	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=1.298;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:74,49:0.40:123
chr4	15569018	rs73125627	G	A	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:102,118:0.54:220
chr4	15569146	rs13116304	A	C	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:99,91:0.48:190
chr4	15575718	rs4280723	C	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	15575751	rs4280724	C	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	15587897	rs6832789	A	T	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr4	15589345	rs28419165	C	T	273.79	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr4	15602773	rs80080596	C	CTTA	489.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	15603069	rs1134634	G	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.07;ReadPosRankSum=0.516;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr4	15657036	rs184805452	C	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr4	15689928	rs4235380	G	A	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:56,66:0.54:122
chr4	15690233	rs6449160	C	A	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	15717321	rs3213710	G	A	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	15737882	rs4698413	C	T	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	15739488	rs4283655	A	G	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	15780358	rs11574921	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,44:0.42:106
chr4	15826415	rs147070346	G	GT	80.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr4	15849986	rs3796863	G	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr4	15937526	rs1042510	G	A	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:94,101:0.52:195
chr4	15937731	rs2072313	T	C	9200.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr4	15964040	rs2286460	G	A	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	15964501	rs2286459	G	A	10270.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr4	15964573	rs758328	A	G	11823.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:1,449:1.00:450
chr4	15964670	rs35496730	C	T	5189.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:269,263:0.49:532
chr4	15964763	rs4698432	C	T	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:83,82:0.50:165
chr4	15977572	rs11734657	T	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	15981885	rs3841512	G	GA	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.706;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr4	15981926	.	T	TA	699.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.205;QD=3.15;ReadPosRankSum=2.481;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:142,80:0.36:222
chr4	15986042	rs7675574	G	A	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	15986113	rs7659341	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	15987509	.	T	TTTAAG	271.80	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.36;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	15987512	.	T	TGCTTATTTAATCTGTATTAAATATTTAATACAGATAA	531.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=75.96;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	15989191	rs2191004	C	T	538.78	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,27:0.90:30
chr4	15989500	rs34264338	C	CTT	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.462;QD=13.54;ReadPosRankSum=0.307;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr4	15991275	rs2240685	G	A	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	15992654	rs2058145	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr4	15992702	rs2058144	C	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:70,69:0.50:139
chr4	16002050	rs6449212	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	16002317	rs56413603	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr4	16024885	rs2013854	A	G	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	16025837	rs17478336	C	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr4	16037352	rs2078622	C	T	8532.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr4	16164489	rs7359	G	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-1.193;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr4	16172181	rs1662654	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.22;ReadPosRankSum=1.579;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	16190073	rs28645901	T	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr4	16192209	rs9996261	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.874;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr4	16192413	rs7666361	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	16198378	rs10939652	A	G	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-0.402;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:120,72:0.38:192
chr4	16198439	rs10939653	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:90,37:0.29:127
chr4	16204226	.	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=94.126;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.529;QD=1.61;ReadPosRankSum=2.270;SOR=6.665;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr4	16227781	rs3749543	A	G	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	16228538	rs13136055	C	T	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=3.140;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:14,33:0.70:47
chr4	16228641	rs147360928	G	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.770;QD=6.60;ReadPosRankSum=-0.801;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:49,31:0.39:80
chr4	16240306	rs73234668	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr4	16504184	rs872478	G	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=2.732;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr4	16510131	rs9993371	C	T	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-0.367;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr4	16597280	rs1506462	T	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	16675898	rs4698505	C	A	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr4	16676046	rs7699941	A	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	16753863	rs283027	A	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	17492145	rs731437	T	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr4	17494054	rs2597772	A	G	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	17503561	rs3733573	T	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr4	17506164	rs2315248	G	A	2324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.738;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:143,119:0.45:262
chr4	17511127	rs3733574	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr4	17513498	rs3217604	GC	G	13487.73	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=31.66;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,426:1.00:426
chr4	17517099	rs1551091	A	G	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	17581617	rs10939736	T	A	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	17581643	rs35153429	CAG	C	3008.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr4	17583200	rs5856433	TAA	T	272.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;QD=19.48;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:3,11:0.79:14
chr4	17586703	rs3733576	T	C	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	17590475	.	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.766;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=126.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.444;SOR=7.828;set=HC	GT:AD:AF:DP	0/1:184,56:0.23:240
chr4	17590671	rs17499929	G	A	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	17590686	rs35467396	AT	A	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.717;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.827;QD=9.97;ReadPosRankSum=-2.028;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:10,38:0.79:48
chr4	17590734	rs11737120	A	T	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	17599894	rs3775927	G	T	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	17608620	rs4698628	A	G	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	17608884	rs4698629	C	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	17625209	rs11733730	G	C	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	17627294	rs2315552	A	G	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	17627332	rs2315553	T	C	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr4	17634213	rs6825562	A	G	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,176:0.99:177
chr4	17634255	rs6847966	G	A	5851.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	17634256	rs142873186	C	CAA	5726.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	17635556	rs140729140	CAAAAT	C	2348.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	17636507	rs3214318	G	GT	283.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	17638302	rs148915854	T	TA	4990.73	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:158,164:0.51:322
chr4	17640858	rs6811887	C	T	10340.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr4	17643620	rs28501187	G	A	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	17643848	rs2286771	G	A	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	17649233	rs3733577	T	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	17649494	rs6813374	T	C	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	17649499	rs6813375	T	G	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	17654648	rs3815413	T	C	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	17659936	rs10939742	G	T	6229.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	17660082	rs1860596	C	T	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	17660237	rs2302391	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	17689901	rs11306510	AT	A	158.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.000;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr4	17689974	rs4698646	T	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	17694880	rs6449324	G	C	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	17694916	rs3822235	A	G	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr4	17694943	rs3733579	A	G	7090.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr4	17707361	rs57570581	G	A	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	17707627	rs62295656	C	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	17711076	rs3733583	T	C	9402.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr4	17782705	rs35662238	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr4	17812615	rs2074974	A	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	17818885	rs2302212	T	C	3115.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:137,160:0.54:297
chr4	17826860	rs2286538	C	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr4	17829990	rs3795243	G	C	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:126,128:0.50:254
chr4	17841620	rs2286536	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr4	17841848	rs2286535	A	C	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-1.564;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:71,49:0.41:120
chr4	17841948	rs2286534	T	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	17844029	rs17585261	G	A	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:205,164:0.44:369
chr4	17847281	rs16895878	A	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr4	17885296	rs139656197	A	AAC	752.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.28;ReadPosRankSum=1.075;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr4	17887666	rs200110345	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.633;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.316;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr4	20256722	rs1323066	G	A	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:105,71:0.40:176
chr4	20256804	rs813216	C	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr4	20270600	rs2196476	G	A	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr4	20490493	rs117793863	C	T	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:53,66:0.55:119
chr4	20490710	rs543593	T	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr4	20512885	rs78391293	T	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.364;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=0.461;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr4	20520993	rs519813	T	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	20526985	rs146437952	C	CAT	454.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	20541005	rs35993588	AG	A	3252.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:96,83:0.46:179
chr4	20541008	rs3842004	C	A	3261.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:102,88:0.46:190
chr4	20547578	rs12501870	G	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr4	20547838	rs2292439	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.85;ReadPosRankSum=1.150;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr4	20569099	rs2290750	A	G	2935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.619;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:213,160:0.43:373
chr4	20569254	rs12506323	A	G	1558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.13;ReadPosRankSum=-0.724;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:48,43:0.47:91
chr4	20569259	rs2290751	C	T	1518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=0.115;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr4	20599758	rs3775833	C	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	20599783	rs67622693	CAT	C	450.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr4	20599796	rs12507257	A	G	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr4	20706067	.	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.160;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:98,23:0.19:121
chr4	20709238	rs35495469	G	GA	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.825;QD=12.71;ReadPosRankSum=-1.223;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr4	20714642	rs3764964	T	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr4	20714924	rs12331966	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr4	20715244	rs62410126	A	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr4	20726537	rs10654905	C	CTT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.637;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr4	20728841	rs114882466	C	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr4	20733708	rs111474115	C	CA	946.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:61,50:0.45:111
chr4	20734171	rs6812257	G	A	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.76;ReadPosRankSum=0.079;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:19,23:0.55:42
chr4	20734176	rs6811933	C	G	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=1.876;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr4	20736416	rs112956417	A	AAAAC	567.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr4	20751278	rs2322688	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr4	20760644	rs57740160	A	G	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr4	20760683	rs17623902	A	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr4	20884482	rs57696441	G	GAA	382.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.44;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	21305692	rs6448044	C	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=5.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.63;ReadPosRankSum=-0.127;SOR=1.938;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	21698939	.	TAAA	T	571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=10.59;ReadPosRankSum=1.334;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:24,30:0.56:54
chr4	21764761	rs717531	C	T	4668.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:209,232:0.53:441
chr4	21950259	rs6448102	A	G	19130.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	1/1:0,744:1.00:744
chr4	22416133	rs7658234	C	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-1.521;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr4	22416195	rs13106386	C	G	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=1.294;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr4	22439914	rs6823735	A	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr4	22444251	rs374500461	CA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.071;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr4	22444692	rs10018144	C	T	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	22457478	rs16872669	C	T	2401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=1.243;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:163,128:0.44:291
chr4	22715639	rs1963996	A	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	22715657	rs34299764	C	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.967;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-0.224;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	22749783	.	G	GTA	55.75	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	22820504	rs358231	A	T	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr4	23815924	rs2970847	T	C	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	23822328	rs2932976	G	A	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	23886323	rs2946385	G	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=-2.060;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:34,28:0.45:62
chr4	24534687	rs3828558	T	C	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:216,195:0.47:411
chr4	24538573	rs4697063	A	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	24801315	rs2536512	G	A	6130.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:230,297:0.56:527
chr4	24801949	rs2695232	C	T	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	24809884	rs1019229	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	24821760	rs144507372	TG	T	327.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr4	25014048	rs34079294	G	A	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:114,134:0.54:248
chr4	25014191	rs6826019	G	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr4	25028592	rs73250693	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr4	25160732	rs34423002	T	TA	576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.755;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:121,57:0.32:178
chr4	25236017	rs313549	T	C	99.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.16;ReadPosRankSum=1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr4	25253995	rs313567	C	T	3270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=1.143;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:202,175:0.46:377
chr4	25315637	rs199972003	C	CT,CTTT	1450.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.493;QD=14.65;ReadPosRankSum=-1.700;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:23,23,53:0.23,0.54:99
chr4	25316815	rs12508686	T	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr4	25316886	rs316800	C	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr4	25363901	rs315675	T	A	7602.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr4	25370589	rs396393	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-0.704;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	25370589	.	CAA	TAG	198	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=25;MQ=60.0;NF=5;NR=3;PP=198;QD=31.4334843578;SC=AATTAAACTTCAACATAATTA;SbPval=0.48;Source=Platypus;TC=16;TCF=11;TCR=5;TR=8;WE=25370599;WS=25370579;set=Platypus	GT:AD:AF:DP	0/1:8,8:0.50:16
chr4	25370591	rs414879	A	G	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-0.309;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr4	25370627	rs315690	A	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr4	25370962	rs315689	A	T	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	25382216	rs315676	C	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	25391584	rs186408	G	A	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	25393889	rs2292407	C	T	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,53:0.52:102
chr4	25394078	rs2292408	A	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr4	25395674	rs17605267	C	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr4	25404553	rs10023139	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr4	25407356	rs3756202	A	G	2467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.272;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:149,129:0.46:278
chr4	25408516	rs3214034	T	A	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=1.334;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:26,38:0.59:64
chr4	25408724	rs28616687	A	G	44.81	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	25408838	rs34811474	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,53:0.63:84
chr4	25417244	rs3816587	C	T	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	25419283	rs9174	T	C	4786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.668;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:200,245:0.55:445
chr4	25674627	rs114244803	G	A	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-0.497;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:33,30:0.48:63
chr4	25674905	.	TCACA	T	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.89;ReadPosRankSum=-0.533;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr4	25674911	.	G	GAGGGA	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.74;ReadPosRankSum=0.267;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr4	25674913	rs62409436	A	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.43;ReadPosRankSum=0.174;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr4	25678199	rs6448389	A	G	9481.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr4	25678396	rs3733545	G	T	2346.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.714;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.45;ReadPosRankSum=0.866;SOR=0.332;set=HC	GT:AD:AF:DP	1/1:1,95:0.99:96
chr4	25750261	rs3822215	C	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=1.465;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	25758580	rs4401441	G	A	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	25760693	rs2276954	A	G	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr4	25767183	rs4697616	G	A	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	25769129	rs2290575	CC	GG	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	25769319	rs2290578	T	C	17754.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr4	25769327	rs2290579	A	G	17139.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr4	25780599	rs13121073	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr4	25780891	rs4697619	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr4	25915648	rs2305669	G	A	11651.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,440:1.00:440
chr4	26097298	rs139788486	GAAGGAAGGAAGGA	G	757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.01;MQRankSum=1.426;QD=23.68;ReadPosRankSum=0.331;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr4	26274274	rs7680528	T	A	1440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=2.220;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:62,73:0.54:135
chr4	26322759	rs113697915	C	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr4	26364300	rs13116873	C	G	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=1.183;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:38,44:0.54:82
chr4	26387959	rs56122711	AT	A	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=3.239;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr4	26407681	rs3109839	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.16;ReadPosRankSum=-1.473;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr4	26407729	rs6847065	G	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=1.015;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr4	26417136	rs2270226	T	C	2083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-1.518;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:86,104:0.55:190
chr4	26431821	.	GA	G	22	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=12;HapScore=2;MGOF=2;MMLQ=26;MQ=60.0;NF=0;NR=3;PP=22;QD=12.0;SC=TTGATTTAAAGAAAAAAAAAC;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=3;WE=26431829;WS=26431811;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr4	26491117	rs1800855	A	T	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:145,117:0.45:262
chr4	26585881	rs4692549	C	T	3963.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:251,210:0.46:461
chr4	26615982	rs260954	C	T	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	26673761	rs9997999	T	A	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	26673787	rs7691219	A	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	26719569	rs34600164	T	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr4	26721578	rs4590010	T	C	32.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	26737063	rs33992685	C	CT	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-0.869;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,31:0.79:39
chr4	26862546	rs5856957	CT	C	548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=5.381;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.366;QD=5.90;ReadPosRankSum=-1.001;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:33,60:0.65:93
chr4	26959207	rs3792685	T	C	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.673;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr4	27000995	rs6822297	A	G	1907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-1.428;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:102,102:0.50:204
chr4	27004011	rs10028164	G	A	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	27022800	rs10031905	A	G	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	27162341	rs17649944	C	G	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr4	30132766	rs370938014	ATGTG	A,ATG	3883.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.85;MQRankSum=0.577;QD=27.35;ReadPosRankSum=-0.533;SOR=0.549;set=HC	GT:AD:AF:DP	1/2:3,20,119:0.14,0.84:142
chr4	30222301	.	AGT	A	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.25;ReadPosRankSum=-0.718;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr4	30222333	.	C	CAT	65	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=1;NR=3;PP=65;QD=18.25;SC=TGTGTGTAGACATATATATAT;SbPval=0.27;Source=Platypus;TC=11;TCF=6;TCR=5;TR=4;WE=30222341;WS=30222323;set=Platypus	GT:AD:AF:DP	1/0:7,4:0.36:11
chr4	30279724	rs200545568	C	T	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-3.664;QD=14.02;ReadPosRankSum=0.178;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chr4	30279737	rs201741688	C	A	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=3.841;QD=20.37;ReadPosRankSum=-0.921;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:27,34:0.56:61
chr4	30279742	rs199704978	T	C	2496.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.579;MLEAC=2;MLEAF=1.000;MQ=57.94;MQRankSum=-0.413;QD=43.80;ReadPosRankSum=1.821;SOR=0.689;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr4	30279745	rs61794114	G	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-3.815;QD=16.55;ReadPosRankSum=1.341;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr4	30279756	rs372030296	CG	TA	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-3.324;QD=18.76;ReadPosRankSum=1.625;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr4	30279763	rs201240061	C	A	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.175;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=3.063;QD=19.72;ReadPosRankSum=-0.885;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr4	30279782	rs369983595	CG	TA	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.527;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-3.103;QD=19.29;ReadPosRankSum=1.678;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr4	30279789	rs61794115	A	C	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-3.034;QD=24.08;ReadPosRankSum=1.553;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr4	30279808	rs77144188	C	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=53.01;MQRankSum=-2.402;QD=22.52;ReadPosRankSum=0.712;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr4	30279809	rs374967239	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=53.01;MQRankSum=-2.402;QD=22.52;ReadPosRankSum=0.712;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr4	30279815	rs79831746	A	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=51.29;MQRankSum=-2.260;QD=21.18;ReadPosRankSum=1.036;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	30480934	rs7655003	A	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,57:0.56:102
chr4	30976765	.	TTGTGTGTGTG	T	856.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.96;ReadPosRankSum=-1.020;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:4,29:0.88:33
chr4	31031755	rs139430988	T	TTGTGTGTGTGCA	4802.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.198;QD=46.63;ReadPosRankSum=0.942;SOR=0.335;set=HC	GT:AD:AF:DP	1/1:1,102:0.99:103
chr4	31107644	rs36105849	A	AT	324.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.08;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	31107645	rs34357233	A	AT	324.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.08;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	31107765	rs4580617	G	C	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	31116254	rs34203962	AAC	A	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.52;ReadPosRankSum=1.303;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	31116375	rs10006845	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	36069805	rs7657166	G	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,62:0.50:124
chr4	36081878	rs4833069	C	T	11878.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr4	36109409	rs7688562	C	G	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	36121140	rs143366422	G	GT	160.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr4	36122737	rs4832795	A	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr4	36123024	rs1397423	A	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr4	36126393	rs2271331	G	A	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr4	36126696	rs3817165	G	A	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	36130099	rs6148397	T	TACACAC,TACACACACACACAC	1096.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=27;set=Intersection	GT:AF:DP	1/2:0.52,0.48:25
chr4	36130127	rs5009416	T	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr4	36130375	rs5857473	TA	T	1185.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=28.92;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	36130393	rs1397419	C	T	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.693;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr4	36148837	rs73225587	T	C	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr4	36149025	rs1567483	G	A	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	36149113	rs1567484	C	T	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	36160340	rs1546495	G	T	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	36162273	rs11431961	C	CA	317.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=0.640;QD=17.65;ReadPosRankSum=1.208;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr4	36162923	rs2271330	G	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	36211914	rs4394022	C	A	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	36258197	rs7686575	T	C	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.446;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:62,59:0.49:121
chr4	36286015	rs116402730	A	C	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:100,87:0.47:187
chr4	36292018	rs1995319	T	A	2195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-1.747;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:143,112:0.44:255
chr4	36317970	rs9995922	T	C	4552.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	36340891	rs56246836	T	C	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	37247021	rs892825	C	T	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	37432416	rs2973217	A	C	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	37592674	rs937941	T	C	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=2.102;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr4	37636341	rs11730085	C	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr4	37636750	rs2276943	T	G	7830.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr4	37651155	rs2292298	A	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	37666995	rs1221653	T	C	6942.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	37828175	rs2059484	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr4	37828186	rs2059483	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr4	37831850	rs2911907	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=0.328;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	37836302	rs3752683	T	C	1996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.898;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=0.969;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:172,111:0.39:283
chr4	37839366	rs62300673	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr4	37841430	rs2261414	C	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,34:0.43:79
chr4	37841942	rs2714559	T	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr4	37848530	rs6814767	T	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,35:0.51:69
chr4	37850312	rs35704131	TG	T	1314.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,47:0.46:103
chr4	37857106	rs6531590	G	A	270.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	37857166	rs6842360	A	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	37857342	rs11554509	G	C	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr4	37863013	rs28402184	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr4	37863045	rs3832307	AT	A	1130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.70;ReadPosRankSum=-1.362;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:34,38:0.53:72
chr4	37873692	rs28714373	T	A	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.648;QD=7.48;ReadPosRankSum=0.591;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:71,52:0.42:123
chr4	37903756	rs2279027	T	C	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	37922307	rs2925957	G	C	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.909;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.971;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:120,52:0.30:172
chr4	37922416	rs60244784	A	T	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.571;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=21.51;ReadPosRankSum=0.930;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:30,48:0.62:78
chr4	37922423	rs36075899	A	G	1669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.004;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=22.87;ReadPosRankSum=0.718;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:27,46:0.63:73
chr4	37962133	rs2290740	G	A	3359.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:146,164:0.53:310
chr4	37962186	rs6811863	G	C	8920.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr4	38016395	rs10501	T	G	12028.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr4	38019867	rs74971654	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-0.144;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	38022087	rs10015663	A	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=1.999;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:37,39:0.51:76
chr4	38023302	rs34119528	C	G	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.778;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:37,39:0.51:76
chr4	38047545	rs6845120	A	G	2241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.658;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=3.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-1.172;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:184,121:0.40:305
chr4	38053756	.	TG	T	1501	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=6;HapScore=2;MGOF=58;MMLQ=28;MQ=59.82;NF=5;NR=37;PP=1501;QD=36.3571428571;SC=ATGTGCTGAATGGGGGGAATG;SbPval=0.56;Source=Platypus;TC=67;TCF=8;TCR=59;TR=42;WE=38053764;WS=38053746;set=Platypus	GT:AD:AF:DP	1/0:25,42:0.63:67
chr4	38053788	rs58659939	CTGTGTGTGTG	C,CTGTG	4209.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=143;set=Intersection	GT:AF:DP	1/2:0.39,0.61:110
chr4	38062233	rs1364953	T	A	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:134,122:0.48:256
chr4	38062263	rs16994165	G	A	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:110,144:0.57:254
chr4	38091800	rs2303422	A	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr4	38119885	rs623945	G	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	38628475	rs337624	G	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	38628540	rs168086	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=0.276;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr4	38774785	rs10776482	A	G	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:154,173:0.53:327
chr4	38774889	rs4129009	T	C	5186.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:213,253:0.54:466
chr4	38775040	rs10776483	A	G	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:61,90:0.60:151
chr4	38775794	rs11466657	A	G	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:101,129:0.56:230
chr4	38776107	rs11096955	T	G	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.091;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:73,62:0.46:135
chr4	38776180	rs11096956	C	A	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-0.732;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:44,44:0.50:88
chr4	38776491	rs11096957	T	G	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:56,65:0.54:121
chr4	38798648	rs5743618	C	A	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:105,127:0.55:232
chr4	38798935	rs5743614	C	T	2305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.489;MLEAC=1;MLEAF=0.500;MQ=47.19;MQRankSum=-5.867;QD=10.03;ReadPosRankSum=1.422;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:117,113:0.49:230
chr4	38799710	rs4833095	T	C	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:84,63:0.43:147
chr4	38830350	rs5743810	A	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,48:0.61:79
chr4	38907021	.	TA	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.681;QD=0.82;ReadPosRankSum=-1.299;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr4	38916465	rs4563504	A	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr4	38930985	rs35369040	T	TAA	2564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.439;QD=12.39;ReadPosRankSum=1.368;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:117,90:0.43:207
chr4	38930995	rs58035134	C	A	3294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.900;QD=15.54;ReadPosRankSum=0.026;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:115,97:0.46:212
chr4	38931097	rs13150445	A	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr4	38932922	rs2291493	C	A	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=0.440;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr4	38933726	rs4833106	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr4	38937372	rs2271031	T	C	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=1.798;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:36,43:0.54:79
chr4	38944976	rs34903665	A	AT	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.021;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:36,26:0.42:62
chr4	38990334	rs3821986	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr4	38995310	rs11721954	A	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-0.663;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr4	38995374	rs10212770	T	C	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	39034066	rs56090217	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-1.403;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr4	39046586	rs111344840	CA	C	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	39046651	rs76308346	C	G	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=-0.460;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:47,36:0.43:83
chr4	39064126	rs2711942	G	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr4	39064162	rs2711941	A	C	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:102,91:0.47:193
chr4	39065091	rs2711940	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr4	39094738	rs2566149	G	A	3210.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:166,164:0.50:330
chr4	39094954	rs2712007	G	C	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:112,95:0.46:207
chr4	39109399	rs12508577	A	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr4	39114929	rs3796510	G	A	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.23;ReadPosRankSum=0.618;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr4	39114945	rs3839126	A	AG	169.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.14;ReadPosRankSum=-0.157;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr4	39116775	rs10026775	A	T	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:80,93:0.54:173
chr4	39116911	rs3733276	T	C	3171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.940;QD=10.33;ReadPosRankSum=-0.761;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:145,162:0.53:307
chr4	39117103	rs3733277	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr4	39122577	rs3733274	A	G	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:83,72:0.46:155
chr4	39122697	rs3733275	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr4	39128101	rs7694760	A	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr4	39184163	rs150860929	G	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.840;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:46,27:0.37:73
chr4	39184297	rs148579854	AAG	A	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.815;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr4	39187521	rs111449236	TG	T	518.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.246;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:115,62:0.35:177
chr4	39187522	rs6839511	G	T	1836.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-0.250;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:77,100:0.56:177
chr4	39188098	.	CAA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.41;ReadPosRankSum=-0.425;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr4	39205365	rs1451817	C	T	7975.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr4	39216221	rs2167494	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=1.662;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr4	39216393	rs372720511	AT	A	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.744;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr4	39217352	rs3733287	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.71;ReadPosRankSum=-0.533;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr4	39233719	rs113407055	T	TA	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=5.968;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.143;QD=2.34;ReadPosRankSum=0.456;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr4	39233977	rs11729098	G	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr4	39242111	rs9998591	C	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr4	39259190	rs11096987	A	G	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.363;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.784;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr4	39271541	rs3733280	A	G	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:107,113:0.51:220
chr4	39276623	rs11096989	A	AG	1903.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:85,64:0.43:149
chr4	39279671	rs56151655	C	CA	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-0.170;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:27,30:0.53:57
chr4	39279724	rs12648082	T	C	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:101,98:0.49:199
chr4	39279907	rs2276888	A	G	3855.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:171,192:0.53:363
chr4	39301605	rs2066788	G	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr4	39302029	rs2066786	T	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr4	39303925	rs2066782	A	G	2927.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:162,154:0.49:316
chr4	39304918	.	G	GA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.73;ReadPosRankSum=1.427;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr4	39308187	rs2066789	G	A	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	39329102	rs11096992	G	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=2.529;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:29,26:0.47:55
chr4	39343272	.	G	A	3794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=1.355;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:264,210:0.44:474
chr4	39343940	rs2306596	C	A	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:126,141:0.53:267
chr4	39347146	.	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-0.624;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr4	39353122	rs4975007	C	T	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	39368083	rs3736168	C	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr4	39413650	rs58015370	A	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	39439264	rs4975015	T	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr4	39448542	rs7685429	C	G	16311.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,623:1.00:623
chr4	39450229	rs4975017	C	A	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=3.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-2.882;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:132,121:0.48:253
chr4	39450403	rs112327399	TGA	T	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.29;ReadPosRankSum=0.598;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	39456392	rs1463478	G	A	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=1.145;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr4	39457870	rs3216720	T	TG	689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.810;QD=11.69;ReadPosRankSum=-0.016;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr4	39458051	rs2125313	A	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr4	39459724	rs2687958	T	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr4	39460352	rs11550000	C	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr4	39460490	rs2276890	C	G	4935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=1.156;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:277,256:0.48:533
chr4	39466639	rs76534325	A	G	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:82,61:0.43:143
chr4	39469416	rs9990499	C	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr4	39472796	rs73137454	T	A	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-3.119;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:75,88:0.54:163
chr4	39472842	rs2125314	T	A	3435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=0.617;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:203,177:0.47:380
chr4	39472946	.	CTT	C,CT	3041.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=2.258;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=3.204;SOR=1.149;set=HC	GT:AD:AF:DP	1/2:17,103,86:0.50,0.42:206
chr4	39472987	rs116183981	C	T	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.900;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:61,63:0.51:124
chr4	39474868	rs749915	G	A	1932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.189;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:120,105:0.47:225
chr4	39478832	rs1048140	G	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:75,47:0.39:122
chr4	39478946	rs11934814	C	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=-1.924;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr4	39501647	rs58175625	C	CA	138.75	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	39501722	rs60656244	CAAA	C	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.492;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr4	39505927	.	C	CA	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=3.607;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.451;QD=0.77;ReadPosRankSum=-0.308;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:174,40:0.19:214
chr4	39510122	rs11735116	G	T	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,66:0.44:151
chr4	39511300	rs73137495	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr4	39511530	rs71645104	T	TA	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=1.453;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:82,37:0.31:119
chr4	39528752	rs4975020	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr4	39606533	rs73240622	A	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr4	39700173	rs1055582	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr4	39747536	rs302931	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr4	39757480	rs11389468	A	AT	766.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr4	39827204	rs200023345	CT	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.833;QD=4.96;ReadPosRankSum=1.164;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr4	39827804	rs374518376	GTT	G	1914.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.428;QD=21.51;ReadPosRankSum=0.556;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:12,77:0.87:89
chr4	39864448	rs4547806	G	A	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	39871117	rs34039605	G	GA	1245.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr4	39900183	.	G	GA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.614;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr4	39910172	rs35396203	GA	G	2131.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	39915454	rs11725674	G	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	39918636	rs10001599	A	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.232;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=-2.716;QD=10.14;ReadPosRankSum=-1.036;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:7,26:0.79:33
chr4	39921942	rs28449663	A	G	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	39924372	rs373105119	T	TA	363.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.987;MLEAC=2;MLEAF=1.000;MQ=61.26;MQRankSum=1.014;QD=12.52;ReadPosRankSum=0.897;SOR=0.343;set=HC	GT:AD:AF:DP	1/1:5,24:0.83:29
chr4	40045687	rs17585937	C	T	5481.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.86;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	40045727	rs1704151	T	G	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	40108750	rs1704154	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	40121562	rs794001	G	A	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	40337523	rs56241474	C	T	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.030;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:94,76:0.45:170
chr4	40337908	rs10022491	T	C	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=2.519;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:116,76:0.40:192
chr4	40337944	rs56159866	C	T	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=0.605;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:85,65:0.43:150
chr4	40350763	rs10029872	T	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	40356422	rs10009228	A	G	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,209:0.99:211
chr4	40428010	rs278981	T	C	6060.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr4	40438576	rs2307046	A	G	12097.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=1.603;SOR=0.258;set=HC	GT:AD:AF:DP	1/1:1,467:1.00:468
chr4	40440215	rs2291580	T	C	34628.77	.	AC=2;AF=1.00;AN=2;DB;DP=1316;set=Intersection	GT:AD:AF:DP	1/1:0,1306:1.00:1306
chr4	40440854	rs1052153	G	C	10622.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr4	40778146	rs2465570	C	T	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:68,81:0.54:149
chr4	40778162	rs2437323	T	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:71,72:0.50:143
chr4	40788544	rs2953325	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr4	40809207	.	G	GA	740.73	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr4	40810747	rs2261167	A	G	13397.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr4	40810978	rs882733	G	A	2446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=-0.205;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:80,113:0.59:193
chr4	40832363	rs2437343	C	T	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	40844199	rs1865605	T	C	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:89,89:0.50:178
chr4	40895552	rs6447505	G	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr4	40937219	rs5857759	GA	G	714.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.926;MLEAC=2;MLEAF=1.000;MQ=59.72;MQRankSum=0.000;QD=14.29;ReadPosRankSum=0.890;SOR=0.347;set=HC	GT:AD:AF:DP	1/1:5,45:0.90:50
chr4	41015823	rs2292234	G	A	15435.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr4	41015899	rs4861358	C	T	10077.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:2,388:0.99:390
chr4	41607754	rs11943304	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	41611575	rs1105886	A	G	8444.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr4	41615249	rs66955637	A	AT	35.25	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	41615690	rs13146318	T	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	41621398	.	G	T	1407.77	.	AC=1;AF=0.500;AN=2;DP=229;set=Intersection	GT:AD:AF:DP	0/1:144,80:0.36:224
chr4	41629036	.	G	GGTGTGTGT	718.73	.	AC=1;AF=0.500;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;QD=37.83;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr4	41631832	rs113955118	CT	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.724;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr4	41633082	rs113754792	G	GT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.916;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr4	41640878	rs6836918	C	T	2541.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:99,126:0.56:225
chr4	41646651	rs2304647	G	C	2246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-1.425;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:82,110:0.57:192
chr4	41652293	rs2289338	C	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr4	41663621	rs17528897	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr4	41663935	rs78605481	TAAA	T	1652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.357;QD=19.91;ReadPosRankSum=-1.442;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:39,44:0.53:83
chr4	41668465	rs17444537	C	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr4	41673604	rs11734372	T	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr4	41984118	rs2660320	C	T	20137.77	.	AC=2;AF=1.00;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	1/1:1,779:1.00:780
chr4	41985101	rs2660332	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	41992677	rs2581434	C	G	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	42003671	rs1047626	A	G	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr4	42003835	rs2581453	C	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	42020142	rs2581423	A	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	42020347	rs2581422	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	42020656	rs192796338	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.68;ReadPosRankSum=-0.566;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr4	42022464	rs15857	C	A	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	42024982	rs13107768	A	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	42025049	rs3213766	A	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	42025207	rs3213767	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	42040947	rs12641900	C	T	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	42051257	rs7684837	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	42051608	rs4241696	T	G	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	42065269	rs3804190	A	G	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	42067163	rs181907125	C	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr4	42069005	rs76632475	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr4	42069029	rs12643893	T	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	42069331	rs11409064	C	CA	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	42402992	rs66671329	A	G	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:77,76:0.50:153
chr4	42403561	rs55934419	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr4	42425852	rs4324577	T	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	42448789	rs35005173	T	TA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.728;QD=3.72;ReadPosRankSum=-0.294;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	42461515	.	CTG	C	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=2.107;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr4	42466641	rs12647640	C	T	170.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	42526711	rs73235594	C	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	42527036	rs3811768	T	C	94.88	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	42551164	rs3811769	T	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr4	42557859	rs145505019	C	CTAAA	252.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.27;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr4	42571074	rs6845603	A	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.63;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	42576522	rs2290869	C	T	2006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-1.124;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:83,102:0.55:185
chr4	42577517	rs2290868	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-0.374;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr4	42580442	rs2306007	T	C	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-1.338;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:44,51:0.54:95
chr4	42582047	rs6447171	A	C	276.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	42588301	rs3214048	G	A	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-1.144;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:35,33:0.49:68
chr4	42592935	rs3833615	C	CA	1850.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:29,106:0.79:135
chr4	42596461	rs77305935	TAC	T	34.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:3,2:0.40:5
chr4	42602606	rs6819419	A	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	42626659	rs11306052	GA	G	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.580;QD=9.33;ReadPosRankSum=1.028;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:12,42:0.78:54
chr4	42627805	rs1460358	A	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	42644006	.	G	GT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.411;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr4	42659028	rs12503784	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr4	42965159	rs10213360	A	C	9671.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr4	43032612	rs4861050	G	A	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	44626641	rs60959366	A	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr4	44626846	rs6838327	G	A	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:224,157:0.41:381
chr4	44631587	rs6813809	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr4	44652030	rs2348353	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr4	44652187	rs1113098	C	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr4	44682465	rs6447368	T	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,51:0.65:78
chr4	44684455	rs13117025	C	T	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	44684507	rs9291245	C	T	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	44685224	rs112232487	T	TA	1132.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	44685225	rs58659516	T	A	1141.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	44685236	rs371225473	AT	A	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.753;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr4	44691795	rs11373408	T	TA	1963.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=4.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-0.991;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:29,130:0.82:159
chr4	44696538	rs12641137	C	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	44699484	rs6851576	T	G	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-1.199;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,34:0.58:59
chr4	44699506	rs6821295	C	T	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-1.502;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,34:0.56:61
chr4	44712908	rs3749582	T	C	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr4	44713235	rs1124828	A	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr4	44719048	rs1873522	A	T	228.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.81;ReadPosRankSum=-1.097;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr4	44720248	rs3792705	T	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr4	46042945	rs6447493	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr4	46066356	rs6838525	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.35;ReadPosRankSum=-0.126;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr4	46086060	rs976156	T	C	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr4	46263862	rs35496835	A	AG	2638.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	46263864	rs10938435	T	A	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	46994972	rs3215202	GA	G	869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=7.514;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.372;QD=6.69;ReadPosRankSum=2.927;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:55,75:0.58:130
chr4	47033770	rs72416056	TCG	T	4108.73	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:27,148:0.85:175
chr4	47034075	rs45460902	G	A	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.05;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	47034103	rs67779259	AG	A	303.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=8.735;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-0.494;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr4	47034136	rs77472678	A	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.56;ReadPosRankSum=0.330;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr4	47034145	rs73247629	G	A	319.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	47034626	rs41309288	C	G	20155.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:0,784:1.00:784
chr4	47322190	rs4482737	T	C	8005.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.63;ReadPosRankSum=1.992;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:2,323:0.99:325
chr4	47408709	rs6289	A	G	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:217,147:0.40:364
chr4	47408838	rs6290	C	T	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:149,161:0.52:310
chr4	47465847	rs13115740	A	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr4	47514685	rs33995001	C	T	3690.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:152,180:0.54:332
chr4	47524932	rs4475121	T	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	47524961	rs12509973	T	A	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-0.667;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr4	47524997	rs11368204	CT	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=1.468;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:55,29:0.35:84
chr4	47525009	rs5858076	T	A	3161.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.01;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	47527537	rs6447564	T	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=2.013;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr4	47538044	rs35012290	G	A	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:115,122:0.51:237
chr4	47538360	rs13152689	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr4	47560163	rs11729411	C	A	4950.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:250,253:0.50:503
chr4	47562802	rs34470690	G	GC	422.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr4	47565862	.	T	TA	53	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=10;HapScore=3;MGOF=14;MMLQ=23;MQ=60.28;NF=0;NR=4;PP=53;QD=16.25;SC=ATGCAAGGATTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=4;WE=47565870;WS=47565852;set=Platypus	GT:AD:AF:DP	1/0:15,4:0.21:19
chr4	47582387	rs2351791	A	C	9027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=1025;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-3.643;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:529,485:0.48:1014
chr4	47666981	rs17462881	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr4	47667064	rs11934749	T	C	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	47682174	rs10517195	A	G	6040.77	.	AC=1;AF=0.500;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	0/1:535,348:0.39:883
chr4	47839929	rs2289433	C	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr4	47853843	rs6822668	T	C	3781.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:122,179:0.59:301
chr4	47857040	rs7690499	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr4	47886329	.	G	GT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.466;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr4	47887536	rs2053404	T	C	5303.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:216,266:0.55:482
chr4	47887991	rs6818556	G	A	2782.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:89,133:0.60:222
chr4	47888137	rs11940441	T	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	47898491	rs6447592	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr4	47905158	rs2119204	A	G	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr4	47916346	rs6826122	C	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	47944029	rs10709670	CA	C	691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.614;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.217;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:82,85:0.51:167
chr4	47945455	rs6819506	C	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	47951945	rs1972883	G	A	3240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.449;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:176,167:0.49:343
chr4	47953515	rs3845160	A	T	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:63,88:0.58:151
chr4	47973110	rs7693648	G	A	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.554;QD=9.69;ReadPosRankSum=-0.476;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr4	47973119	.	TA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.140;QD=0.55;ReadPosRankSum=-2.889;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr4	47973234	rs7677851	T	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr4	48037926	rs13116684	A	G	4568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.623;QD=7.02;ReadPosRankSum=1.943;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:395,256:0.39:651
chr4	48069696	rs2230594	G	C	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:157,209:0.57:366
chr4	48069725	rs9996535	G	A	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:99,118:0.54:217
chr4	48073501	rs906486	G	T	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr4	48078593	rs6850108	C	A	1334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-2.600;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:168,84:0.33:252
chr4	48081896	rs11358014	CA	C	1331.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-0.814;SOR=1.045;set=HC	GT:AD:AF:DP	1/1:8,80:0.91:88
chr4	48082208	rs2352590	T	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	48088431	.	C	T	1258.77	.	AC=1;AF=0.500;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	0/1:84,62:0.42:146
chr4	48088446	rs6858664	A	G	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr4	48115264	rs7658300	C	T	3831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-1.079;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:142,185:0.57:327
chr4	48139565	rs2661529	C	A	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:67,95:0.59:162
chr4	48143201	rs17470892	T	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr4	48147309	rs17574371	T	C	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:121,158:0.57:279
chr4	48147612	rs2661547	T	G	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:43,68:0.61:111
chr4	48148435	rs3749503	G	A	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:129,224:0.63:353
chr4	48158524	rs882715	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr4	48165888	rs139950746	CTTA	C	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	48169769	rs7689953	A	G	7544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=1.751;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:334,378:0.53:712
chr4	48170669	rs2243840	A	G	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=0.995;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:29,53:0.65:82
chr4	48381690	.	C	CT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.888;QD=1.20;ReadPosRankSum=-0.930;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:59,16:0.21:75
chr4	48492434	rs10008444	G	C	7675.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr4	48492769	rs74929644	A	T	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	48493237	rs79858408	G	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	48493388	rs7340880	T	C	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	48516970	rs7434721	C	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	48529683	rs11356838	TA	T	1056.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.434;QD=9.44;ReadPosRankSum=-0.129;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:23,89:0.79:112
chr4	48529733	rs4695385	G	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	48533148	rs6855022	C	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	48537603	rs3838234	T	TACACAC	957.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	48537633	rs3838233	T	C	456.28	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr4	48541973	rs17656010	A	G	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	48558882	rs4694898	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	48573028	rs1507865	T	C	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	48577121	rs28558226	C	T	12453.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr4	48582836	rs4695390	A	T	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	48582909	rs4695391	G	A	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr4	48583323	rs76601306	C	T	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	48596195	rs78630567	TTATAAG	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	48607938	rs2940319	T	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	48610961	rs776604	T	C	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	48611153	rs776603	A	T	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	48611639	rs5858122	G	GA	475.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=-0.982;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr4	48611929	rs776602	A	C	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	48625213	rs776579	C	A	1010.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.63;ReadPosRankSum=0.018;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:4,45:0.92:49
chr4	48636595	rs796555	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	48655635	rs776580	T	A	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	48834896	rs4694906	C	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	48988450	rs3747690	C	A	6633.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr4	48988705	rs2572344	G	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	48990476	rs10537617	CT	C	2843.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:17,185:0.92:202
chr4	48994138	rs28678278	G	T	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	49063872	rs1051447	C	A	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	52896050	rs225170	A	G	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	52927113	rs999634	C	A	4771.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	52927229	rs784944	A	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	52928352	rs34989037	GT	G	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=9.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=1.326;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:15,52:0.78:67
chr4	52938243	rs3860707	T	C	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	52942779	rs55839120	G	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	52945207	rs12641673	G	A	126.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	52945799	rs7689145	C	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	52946161	rs7657148	A	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	52951213	rs147423128	CTT	C,CT	1021.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=106;set=Intersection	GT:AF:DP	1/2:0.28,0.62:74
chr4	52960908	rs3214049	T	A	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	53578899	.	G	T	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.136;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=6.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=2.533;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:42,76:0.64:118
chr4	53822307	rs301093	A	G	5111.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:364,257:0.41:621
chr4	54011526	rs7675987	A	G	5613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=0.067;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:181,277:0.60:458
chr4	54011603	rs17082453	C	T	2276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=1.456;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:210,129:0.38:339
chr4	54139975	rs150594118	GT	G	1769.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr4	54218672	rs1481816	T	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr4	54250189	rs10012853	T	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.86;ReadPosRankSum=-2.655;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	54255887	rs3762879	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr4	54256640	rs28575132	T	C	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.625;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:59,68:0.54:127
chr4	54257131	rs10517296	A	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.79;ReadPosRankSum=-0.431;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	54280705	rs10719406	GA	G	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.212;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr4	54324812	rs191202834	A	C	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:121,114:0.49:235
chr4	54324991	rs2137895	A	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr4	54327211	rs60909872	T	TA	1276.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:53,80:0.60:133
chr4	54327584	rs3765158	A	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr4	54362150	rs6836800	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr4	54362676	rs2271559	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.206;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr4	54373464	rs10021772	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr4	54852693	rs149656971	CTTTTATTTTATTTTATTTTATTTTA	C,CTTTTATTTTATTTTATTTTA	666.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=19;set=Intersection	GT:AF:DP	1/2:0.53,0.47:17
chr4	54876132	rs4437313	C	A	1135.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.362;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=6.609;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-0.186;SOR=0.170;set=HC	GT:AD:AF:DP	0/1:20,65:0.76:85
chr4	54876138	rs200135620	C	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=57.687;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-1.537;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:79,38:0.32:117
chr4	54966667	rs3194383	C	T	24807.77	.	AC=2;AF=1.00;AN=2;DB;DP=953;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,934:1.00:934
chr4	54966830	rs13144341	G	A	13600.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr4	54966919	rs1132998	T	C	17388.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	1/1:5,667:0.99:672
chr4	54967214	rs6554148	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	54967709	rs2278142	C	A	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	55130065	rs149951350	C	G	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:97,67:0.41:164
chr4	55130078	rs2229307	T	C	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:54,77:0.59:131
chr4	55130154	rs2307049	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr4	55131001	rs71823029	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.799;QD=4.98;ReadPosRankSum=-0.992;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr4	55131118	rs139913632	C	T	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:190,187:0.50:377
chr4	55133726	rs4358459	T	G	3285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.828;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:143,166:0.54:309
chr4	55133936	rs28489067	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr4	55133959	rs28650939	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr4	55139771	rs35597368	T	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:137,157:0.53:294
chr4	55141055	rs1873778	A	G	12458.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr4	55143577	rs10028020	G	A	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:82,89:0.52:171
chr4	55146406	rs6148442	T	TTGTAGGTCCCCCAG	590.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	55146754	rs1547905	C	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr4	55151711	rs2412559	C	A	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,256:0.99:258
chr4	55151958	rs3830355	T	TA	603.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr4	55152040	rs2228230	C	T	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:126,146:0.54:272
chr4	55152284	rs4864872	T	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr4	55153837	rs7695657	A	G	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	55154891	rs55732997	T	C	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:84,108:0.56:192
chr4	55156380	rs4864506	G	A	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	55156400	rs2276948	A	G	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr4	55161180	rs180872904	C	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr4	55161254	rs3733540	C	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:102,70:0.41:172
chr4	55161391	rs7685117	T	C	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr4	55524252	rs72550820	G	A	4561.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:340,245:0.42:585
chr4	55524304	rs999020	T	C	3330.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:161,174:0.52:335
chr4	55597638	.	A	G	989.77	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr4	55599436	rs1008658	T	C	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	55946081	rs4421048	A	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	55948108	rs2412617	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.397;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	55955232	rs1531289	T	C	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	55961159	rs2219471	T	C	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	55962545	rs3214870	T	TG	5878.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr4	55964101	rs6838752	T	C	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	55964565	rs3816584	A	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	55968745	rs13135562	C	G	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr4	55972974	rs1870377	T	A	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	55979558	rs2305948	C	T	10487.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr4	55980239	rs7692791	C	T	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	55980456	rs2305949	C	T	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	56262374	rs1128141	A	G	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:163,171:0.51:334
chr4	56290558	rs11732723	C	T	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr4	56290573	rs6810483	T	C	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr4	56291479	rs7677952	C	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:83,62:0.43:145
chr4	56291528	rs7660517	T	C	2194.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:122,116:0.49:238
chr4	56291620	rs35154686	CAA	C	2407.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr4	56309992	rs3736544	A	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr4	56314768	rs72274656	CGTGT	C	218.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	56319088	rs4864996	A	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.35;ReadPosRankSum=0.253;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr4	56319105	rs2412647	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	56322244	rs10529254	TG	T	286.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr4	56329773	rs1522112	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr4	56337041	rs3805151	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.31;ReadPosRankSum=1.593;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	56342326	rs9312661	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr4	56423002	.	G	GT	38	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5559;HP=9;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=2;PP=38;QD=17.3333333333;SC=TTATTTATAGGTTTTTTTTTC;SbPval=0.57;Source=Platypus;TC=4;TCF=1;TCR=3;TR=3;WE=56423010;WS=56422992;set=Platypus	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	56428820	rs2279458	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr4	56447146	rs34437483	GA	G	122.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	56447215	rs6817663	A	G	139.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr4	56465418	rs1387198	T	C	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	56466681	.	G	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=2.554;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:39,22:0.36:61
chr4	56471551	rs3805382	A	G	11270.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr4	56502178	rs3792703	G	A	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr4	56734701	rs3213948	C	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:63,73:0.54:136
chr4	56736794	rs150749988	T	TTTTG	1067.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr4	56750260	rs57299829	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.63;ReadPosRankSum=-1.282;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	56756531	rs2290016	T	C	4025.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:186,206:0.53:392
chr4	56835413	rs1811473	C	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.406;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr4	56877725	rs191768874	G	T	910.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.99;MQRankSum=1.770;QD=12.48;ReadPosRankSum=-2.792;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:30,43:0.59:73
chr4	57167324	rs74499702	AT	A	180.76	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr4	57167507	rs58767323	C	G	3790.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:199,201:0.50:400
chr4	57176710	rs13123803	G	A	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	57176964	rs371414283	CT	C	747.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=17.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=1.114;SOR=4.089;set=HC	GT:AD:AF:DP	0/1:51,59:0.54:110
chr4	57176965	rs5858374	T	C	343.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.710;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:73,40:0.35:113
chr4	57176966	rs60121364	T	C	919.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=16.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.158;SOR=4.235;set=HC	GT:AD:AF:DP	0/1:43,65:0.60:108
chr4	57180473	rs6823339	C	A	1548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.191;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:80,79:0.50:159
chr4	57180563	rs59615456	G	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr4	57180576	rs138358443	C	CGGAGCGGAGGGAGCGGAG	571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=1.655;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr4	57180616	rs11723379	G	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-1.363;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr4	57181629	rs61750793	C	T	4812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.109;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:314,247:0.44:561
chr4	57181632	rs7672073	G	C	19660.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.49;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,570:1.00:570
chr4	57181995	rs3796547	C	T	3716.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:267,193:0.42:460
chr4	57182647	rs3822003	G	A	6053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-1.535;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:399,319:0.44:718
chr4	57182758	rs28559894	C	T	2422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=1.047;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:214,136:0.39:350
chr4	57189498	rs2292985	G	A	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:36,63:0.64:99
chr4	57190356	rs7695701	G	A	4043.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:141,198:0.58:339
chr4	57194329	.	G	T	21	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=3;HapScore=2;MGOF=4;MMLQ=26;MQ=60.0;NF=3;NR=0;PP=21;QD=18.5904041824;SC=GCCAACCTTTGGTAATGGTTT;SbPval=1.0;Source=Platypus;TC=11;TCF=9;TCR=2;TR=3;WE=57194337;WS=57194320;set=Platypus	GT:AD:AF:DP	0/1:8,3:0.27:11
chr4	57194460	rs6811153	A	G	3640.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:178,189:0.51:367
chr4	57194525	rs6834736	C	G	4732.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:210,241:0.53:451
chr4	57208955	rs9996468	A	T	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=-0.881;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr4	57215677	rs3796544	G	A	4916.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:213,244:0.53:457
chr4	57219523	rs6554347	A	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr4	57219592	rs6554348	G	A	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr4	57237683	rs6554354	G	A	4293.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:182,220:0.55:402
chr4	57269363	rs35136233	TA	T	2940.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:122,107:0.47:229
chr4	57269591	rs34121369	T	TA	2635.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:104,103:0.50:207
chr4	57269646	rs112538106	A	AAAAG	1747.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr4	57270197	rs7661712	T	C	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-1.405;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:40,49:0.55:89
chr4	57273840	rs11538098	C	G	9144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.751;ClippingRankSum=0.000;DB;DP=894;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.397;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:425,466:0.52:891
chr4	57276739	rs2176785	G	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr4	57425443	rs7677956	G	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	57425469	rs369698463	CA	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=-0.042;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr4	57425520	rs76480778	A	AT	1661.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.439;QD=21.03;ReadPosRankSum=-1.412;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:4,75:0.95:79
chr4	57425670	rs115337450	C	T	2057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.907;QD=8.68;ReadPosRankSum=0.747;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:129,108:0.46:237
chr4	57458942	rs6858341	C	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	57516896	rs4371677	G	A	7177.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr4	57521972	rs144818228	GGCTCAGCC	G	6285.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	57522220	rs4626270	A	G	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	57523869	rs7693834	T	C	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr4	57524124	rs6857396	T	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	57686821	rs3733303	T	A	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-0.973;QD=5.23;ReadPosRankSum=0.359;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:44,25:0.36:69
chr4	57785786	rs10866440	A	T	99.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.65;ReadPosRankSum=-0.000;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr4	57793751	rs1105434	G	A	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr4	57830501	rs9996331	G	A	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=10.58;ReadPosRankSum=0.883;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:43,49:0.53:92
chr4	57834747	rs13146090	C	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr4	57843320	rs4865167	A	G	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	57860989	.	CT	C	103	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=1;MGOF=14;MMLQ=25;MQ=59.86;NF=0;NR=7;PP=103;QD=21.7186999814;SC=AATGAATGCCCTTTGGATCCT;SbPval=1.0;Source=Platypus;TC=27;TCF=0;TCR=27;TR=7;WE=57860997;WS=57860979;set=Platypus	GT:AD:AF:DP	1/0:20,7:0.26:27
chr4	57861358	rs2293175	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	57871400	rs41553919	AT	A	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.695;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr4	57871750	.	T	TTC	487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.105;QD=5.48;ReadPosRankSum=3.422;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:48,41:0.46:89
chr4	57873296	rs67541678	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr4	57876955	rs1718878	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.566;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	57881715	rs1713982	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr4	57883175	rs1718866	G	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	57886946	rs1718831	T	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr4	57887252	rs13146153	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr4	57888510	rs1718830	T	C	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=-0.546;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:66,83:0.56:149
chr4	57889332	rs1718862	G	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	57889677	rs1056364	C	T	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:180,110:0.38:290
chr4	57891200	rs41554513	GT	G	256.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr4	57891239	rs6843644	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr4	57897570	rs12621	G	T	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-1.786;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:27,30:0.53:57
chr4	57899602	rs2271808	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr4	57906986	rs3755906	A	T	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:78,66:0.46:144
chr4	57976487	rs11573021	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr4	62382943	rs335311	A	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr4	62383315	rs335312	G	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr4	62445246	rs10018746	T	C	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	62449316	rs3075153	GTA	G	3259.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	62453209	rs2172802	A	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	62542879	rs1391319	G	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	62542957	rs4860425	C	A	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	62598689	rs10434219	C	T	7596.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr4	62599289	rs9312082	G	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	62758251	rs7691112	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	62775479	.	A	ATGTG	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.41;ReadPosRankSum=2.100;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr4	62778315	rs12503398	A	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	62800554	rs2305339	G	A	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:103,89:0.46:192
chr4	62800728	rs734644	T	C	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-0.426;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:44,55:0.56:99
chr4	62845388	rs1397547	G	C	7761.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr4	62845490	rs1397548	A	G	10940.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.15;ReadPosRankSum=1.979;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:2,433:1.00:435
chr4	65142710	rs1483713	C	T	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	65142835	rs1483712	G	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	65145955	rs1483711	T	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	65145966	rs5858871	T	TAA	1067.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	65146700	rs10012755	A	G	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	65146711	rs1483709	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	65147404	rs10001161	T	C	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	65165661	rs11935568	G	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	65165849	rs13139627	G	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	65165909	rs13121693	T	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	65180308	rs35642943	GGTGTGTGTGTGT	G,GGTGTGT	898.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=62;set=Intersection	GT:AF:DP	0/1:0.56:45
chr4	65180309	.	GT	G	621.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=4.287;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.686;QD=12.69;ReadPosRankSum=-0.126;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr4	65180311	.	GTGTGT	G	621.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=-0.730;QD=12.19;ReadPosRankSum=-0.273;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr4	65240750	rs6551826	T	A	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	65240805	rs6551827	A	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	66197804	rs7349683	C	T	11663.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,458:1.00:458
chr4	66214043	rs2290254	G	A	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	66218728	rs3792649	C	T	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	66218917	rs376834421	GTA	G	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-1.659;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr4	66218980	.	G	GAAAT	92	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=3;HapScore=2;MGOF=5;MMLQ=26;MQ=60.0;NF=0;NR=3;PP=92;QD=58.012834791;SC=TTTATTAAATGAAAGATATTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=66218988;WS=66218970;set=Platypus	GT:AD:AF:DP	1/1:3,3:0.50:6
chr4	66233029	rs2198104	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	66286088	rs6551921	G	A	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	66286100	rs6551922	T	C	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	66286414	rs6551923	T	C	216.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	66468046	rs5858973	TA	T	804.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	66509194	rs4343775	T	C	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	68214260	rs7659344	C	G	401.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.91;ReadPosRankSum=-0.728;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr4	68214270	.	G	GAGGAAGGAAGGAAGGAAGGA	91.70	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=91.70;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr4	68359499	rs41278557	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr4	68360694	rs2632453	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.97;ReadPosRankSum=-0.022;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	68360955	rs2646282	A	G	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=0.106;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:38,38:0.50:76
chr4	68406882	rs3775861	A	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	68410009	rs17625547	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.28;ReadPosRankSum=-0.531;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	68416393	rs11436062	T	TA	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.490;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.680;QD=4.50;ReadPosRankSum=-0.556;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:36,28:0.44:64
chr4	68416639	.	GTTGTTTTGTTTTGTT	G	536	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=536;QD=272.5;SC=AAAAGTAAGAGTTGTTTTGTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=68416661;WS=68416629;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr4	68424355	.	AGT	A	123	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=7;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=5;NR=5;PP=123;QD=13.0;SC=TGGAAAAAAAAGTGTGTGTGT;SbPval=0.32;Source=Platypus;TC=32;TCF=20;TCR=12;TR=10;WE=68424364;WS=68424345;set=Platypus	GT:AD:AF:DP	1/0:22,10:0.31:32
chr4	68424378	rs144504386	CTG	C	118.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:79,12:0.13:91
chr4	68436883	rs13111555	T	C	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	68436975	rs116421847	T	C	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=-0.969;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr4	68441091	rs2306810	T	C	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:82,105:0.56:187
chr4	68442968	rs11556614	A	G	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	68447200	rs2242331	A	G	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr4	68449269	rs144427229	G	GT	178.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr4	68458937	rs3816821	G	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	68484837	rs111757763	C	A	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:66,87:0.57:153
chr4	68489007	rs3830312	C	CA	807.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.349;QD=20.71;ReadPosRankSum=1.763;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr4	68490044	rs10454252	C	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	68490122	rs12331690	G	A	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	68496080	rs354866	G	A	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	68497389	rs72642357	T	A	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	68497597	rs77075932	C	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	68500171	rs10008910	A	G	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	68510597	rs143223029	GA	G	125.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	68512252	rs17633426	T	C	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	68515054	rs6840867	A	G	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	68531137	.	T	TTTTG	39.06	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=9.77;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	68534392	rs10010188	C	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	68544318	rs28483797	C	T	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	68547157	rs200361645	A	AT	106.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	68547809	rs34482936	A	ATAC	3337.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	68562176	rs10660788	T	TACAC	476.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	68566689	rs78578320	G	A	7699.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr4	68566891	rs34378415	TG	T	6068.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	68567025	rs28653581	T	G	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	68586267	rs17635222	G	C	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	68619601	rs4986942	G	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr4	68700956	rs6824984	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.53;ReadPosRankSum=-0.210;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr4	68780253	rs1371933	G	A	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr4	68780399	rs1371932	A	G	5759.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:257,294:0.53:551
chr4	68780512	rs10025303	C	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr4	68784774	rs353163	T	C	4030.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:137,198:0.59:335
chr4	68788694	rs353159	G	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=0.503;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:29,34:0.54:63
chr4	68788719	rs2119382	T	C	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-1.101;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr4	68812283	rs11930532	C	T	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	68812444	rs34591422	T	TAA	370.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.17;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	68829004	rs10518051	A	G	5737.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:330,309:0.48:639
chr4	68829207	rs6552134	G	A	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr4	68904637	rs6552141	A	C	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=4.162;MLEAC=1;MLEAF=0.500;MQ=47.47;MQRankSum=-2.803;QD=9.92;ReadPosRankSum=-1.439;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:99,91:0.48:190
chr4	68904710	rs186336367	T	G	2906.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:158,148:0.48:306
chr4	68904834	rs9999589	T	G	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr4	68919617	rs10018943	G	A	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=0.466;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:64,100:0.61:164
chr4	68928537	rs3819257	G	A	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:209,160:0.43:369
chr4	68928740	rs1837215	G	A	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:98,105:0.52:203
chr4	68934306	rs10004522	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr4	68935672	rs12504120	G	T	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.374;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:55,41:0.43:96
chr4	68938002	rs12501405	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	68956422	rs57121360	T	A	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=3.002;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:69,69:0.50:138
chr4	68956498	rs13115830	C	T	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	68964768	rs12503814	G	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:83,66:0.44:149
chr4	69056974	rs114552880	T	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.949;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr4	69057073	rs4860284	G	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.868;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr4	69078113	rs4463136	T	C	3831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.649;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:167,189:0.53:356
chr4	69083563	rs10008636	C	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.772;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr4	69094507	rs2319797	T	A	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-0.232;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:65,98:0.60:163
chr4	69094575	rs2319796	T	G	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	69094926	rs63181060	TTAAA	T	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	69095197	rs12331141	T	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr4	69097150	rs5859125	TA	T	1695.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=22.31;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	69098006	rs6552175	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-0.172;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	69100137	rs35624784	G	GA	229.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr4	69100396	rs13151732	G	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr4	69416353	rs62316988	T	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:127,79:0.38:206
chr4	69416556	rs13102139	T	C	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:195,107:0.35:302
chr4	69417570	rs28374627	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-0.543;QD=3.52;ReadPosRankSum=0.869;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr4	69433714	rs34664906	C	T	5643.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:297,292:0.50:589
chr4	69434217	rs28672900	G	A	10933.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr4	69886151	rs11730623	A	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,67:0.50:133
chr4	69962101	rs73823859	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr4	69964234	rs34182209	C	CT	1070.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:142,83:0.37:225
chr4	69964391	rs34661811	C	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=4.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=1.925;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:91,42:0.32:133
chr4	69972779	rs4257713	G	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr4	69973921	rs57913007	C	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:139,94:0.40:233
chr4	70066319	rs72551394	G	T	4299.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:193,215:0.53:408
chr4	70079838	rs4694697	T	C	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:68,98:0.59:166
chr4	70146704	rs7689398	G	A	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:200,237:0.54:437
chr4	70160338	rs72552703	G	C	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.602;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=26.858;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=-10.039;QD=7.31;ReadPosRankSum=-0.187;SOR=2.537;set=HC	GT:AD:AF:DP	0/1:158,47:0.23:205
chr4	70160342	rs72552704	TG	CC	1530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.280;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=31.117;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=-10.175;QD=7.36;ReadPosRankSum=-0.273;SOR=2.692;set=HC	GT:AD:AF:DP	0/1:160,48:0.23:208
chr4	70283908	rs2642841	T	A	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	70288954	rs2736507	C	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-2.705;QD=3.30;ReadPosRankSum=0.153;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr4	70288981	rs2736505	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-3.062;QD=5.39;ReadPosRankSum=0.834;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr4	70346564	rs13142440	GA	TT	10822.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	70346680	rs28419590	G	A	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	70346711	rs28679647	G	C	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	70352164	rs41297427	A	AATTATC	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	70352181	rs41297425	C	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr4	70352212	rs146944026	ATTTTAT	A	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	70355211	rs1845555	T	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=24.55;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	70360752	rs13104687	C	T	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:53,75:0.59:128
chr4	70455478	rs2288741	G	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr4	70465153	rs3775782	A	T	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:87,67:0.44:154
chr4	70501451	rs6811810	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=0.250;QD=11.05;ReadPosRankSum=3.393;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr4	70512773	rs41292307	A	G	2571.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:137,131:0.49:268
chr4	70512801	rs55864295	A	G	2588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-0.117;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:145,139:0.49:284
chr4	70513139	rs1347046	C	T	7629.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr4	70592638	rs4149417	A	C	79.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.96;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	70599240	rs4149415	A	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-2.217;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr4	70620708	rs2134668	G	A	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr4	70707945	rs1220724	A	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	70798436	rs2306995	A	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr4	70803380	rs1220860	T	A	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr4	70804849	rs2279526	C	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-0.871;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr4	70805831	rs1220858	A	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-0.044;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr4	70807771	rs10030475	C	T	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-1.134;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:38,34:0.47:72
chr4	70811806	rs1237375	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr4	70825933	rs2673720	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.253;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr4	70864065	rs3775764	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr4	70898907	rs1849937	C	T	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:70,80:0.53:150
chr4	70898953	rs1136515	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:79,70:0.47:149
chr4	70899037	rs776852	T	A	581.31	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr4	70921164	rs2271643	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	70921337	rs2271644	G	A	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	70934964	rs4694266	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr4	70938324	rs909036	C	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=0.268;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr4	70944452	rs1399812	G	A	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	70947318	rs2063819	C	T	6527.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	70947376	rs2063820	T	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr4	70948533	rs7675265	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr4	71005558	rs80069567	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr4	71008313	rs777398	G	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr4	71008375	rs777399	T	C	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	71008910	rs3775758	C	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=1.381;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:32,18:0.36:50
chr4	71008940	rs3775759	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=1.896;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr4	71009033	rs777400	A	G	85.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.32;ReadPosRankSum=0.210;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr4	71020205	rs1709273	C	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	71021888	rs1709274	C	T	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	71024010	rs111347259	T	TACAA	1163.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	71027213	rs62305548	G	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr4	71201388	rs1351419	C	T	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr4	71201943	rs13039	A	G	2335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-1.566;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:117,115:0.50:232
chr4	71227802	rs1842478	A	G	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.786;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.954;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=1.624;QD=6.48;ReadPosRankSum=-0.208;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:62,32:0.34:94
chr4	71227877	rs62322478	G	A	2169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.214;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=0.477;QD=10.64;ReadPosRankSum=-1.643;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:97,107:0.52:204
chr4	71227998	rs1842477	A	T	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=1.349;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr4	71228001	rs1842476	G	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	71228024	rs17148798	G	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	71232430	rs10024123	T	C	34179.77	.	AC=2;AF=1.00;AN=2;DB;DP=1357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,1330:1.00:1330
chr4	71232701	rs6853742	C	T	20272.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.23;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,773:1.00:773
chr4	71250308	rs2233586	T	A	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.34;QD=25.99;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	71250399	rs7676909	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	71255370	rs7674958	A	T	9759.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr4	71255593	rs2988	G	A	36100.77	.	AC=2;AF=1.00;AN=2;DB;DP=1418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,1393:1.00:1393
chr4	71255767	rs3733493	A	G	14568.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr4	71275012	rs1352689	T	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	71347333	rs72655156	C	T	8420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.019;QD=9.84;ReadPosRankSum=-0.532;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:433,423:0.49:856
chr4	71384488	rs28674149	C	T	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	71384579	rs35692424	G	A	10590.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr4	71388379	rs28754427	A	T	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	71388394	rs4123809	T	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	71390795	rs17733287	C	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	71396989	rs17676820	C	T	9006.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr4	71398064	rs3852099	G	A	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	71467593	rs28538959	A	C	1779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.186;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:91,93:0.51:184
chr4	71467710	rs13115627	A	G	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-0.579;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:46,40:0.47:86
chr4	71528020	.	G	GA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.30;ReadPosRankSum=-0.051;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr4	71570808	.	C	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.436;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr4	71691743	rs6814981	C	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	71693494	.	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.676;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr4	71698183	rs4694081	C	A	6538.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr4	71704965	rs3775728	C	T	24922.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;ClippingRankSum=0.000;DB;DP=975;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=25.77;ReadPosRankSum=-1.244;SOR=0.364;set=HC	GT:AD:AF:DP	1/1:1,966:1.00:967
chr4	71705262	rs6813092	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	71768079	rs1871048	C	G	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr4	71864013	rs6446988	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	71888330	rs68172719	G	A	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-1.242;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:33,38:0.54:71
chr4	71888332	rs373938314	C	CT	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.627;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr4	71892513	rs1486271	A	T	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	71892550	rs183454946	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr4	71892609	rs72553933	A	T	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr4	71894321	rs35880082	C	CTTTT	544.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.32;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	71894476	rs11394166	A	AT	1073.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.891;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=0.791;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:5,61:0.92:66
chr4	71894563	rs12513202	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=1.591;QD=17.75;ReadPosRankSum=-0.040;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr4	71894941	rs77592672	A	G	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=1.777;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr4	71895260	rs4643786	C	T	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	72306223	rs34445073	C	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr4	72316822	rs10022349	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr4	72397710	rs3775162	C	T	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	72397964	rs10446504	T	C	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	72411967	rs4694097	A	G	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	72423624	rs1453474	C	T	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.42;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	72425863	rs1453458	C	T	5625.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr4	72429433	rs6812916	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr4	72429452	rs2290397	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	72432991	rs965606	A	C	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	72433545	rs1062677	A	C	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=1.138;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr4	72433759	rs1453453	C	T	93.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	72618296	rs9016	T	C	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	72618323	rs4588	G	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr4	72618334	rs7041	A	C	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:39,67:0.63:106
chr4	72620865	rs71673486	C	CTATTTATT	2235.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=42.99;SOR=1.755;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	72622403	rs222033	A	C	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	72634975	rs222016	G	A	5634.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	72934539	rs9884712	A	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	72934578	rs11444220	C	CT	147.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	72934632	rs9884478	C	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	73175048	rs12501859	G	A	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr4	73175093	rs10024487	C	T	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	73181564	rs74652320	G	T	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=1.138;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:92,78:0.46:170
chr4	73188595	rs202048313	TCTC	T	410.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr4	73414286	rs788908	C	T	3204.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:163,161:0.50:324
chr4	73433122	rs33925079	GA	G	1766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.253;QD=10.71;ReadPosRankSum=-0.737;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:100,65:0.39:165
chr4	73433315	rs6830556	G	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	73434379	rs5859330	GT	G	4497.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,215:1.00:216
chr4	73434535	rs34234669	CA	C	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:56,15:0.21:71
chr4	73615956	rs1350836	C	T	3290.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:212,174:0.45:386
chr4	73930889	rs71215480	CT	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.580;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=17.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=1.595;SOR=1.843;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr4	73930894	rs201334203	T	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=20.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=2.391;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr4	73931170	rs2306057	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr4	73933633	rs6845082	A	T	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr4	73933671	rs66478166	ATGTG	A,ATG	3946.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.338;QD=29.02;ReadPosRankSum=-1.422;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:2,84,50:0.62,0.37:136
chr4	73942678	rs2306058	C	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr4	73991006	rs6822576	T	C	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr4	74014809	rs1534450	A	C	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr4	74274864	rs113884088	G	GCACA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.58;ReadPosRankSum=0.967;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr4	74285191	.	G	GT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=1.989;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.947;QD=0.95;ReadPosRankSum=0.214;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:98,24:0.20:122
chr4	74285758	rs2236766	G	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	74285823	rs2236767	G	A	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	74302800	rs41265655	A	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr4	74302870	rs16849384	T	C	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr4	74304118	rs6446932	T	A	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	74308240	rs188091575	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr4	74313169	rs7667494	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	74318330	rs4235117	A	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	74349867	rs11939341	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr4	74352916	rs2071098	A	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,40:0.48:84
chr4	74357851	rs11733262	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr4	74361254	rs10212657	T	C	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-0.454;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:39,37:0.49:76
chr4	74363282	rs1158101	T	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=0.674;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	74364992	rs67050083	CT	C	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.192;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:79,62:0.44:141
chr4	74442349	rs17804499	G	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:112,79:0.41:191
chr4	74447417	rs1247669	C	G	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.536;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-1.448;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:95,33:0.26:128
chr4	74447452	rs1247670	C	T	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-1.736;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:133,65:0.33:198
chr4	74447492	rs2272427	G	A	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-0.039;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:135,83:0.38:218
chr4	74447510	rs1247671	A	C	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-0.068;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:115,82:0.42:197
chr4	74448078	rs148589925	ATCT	A	229.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr4	74451073	rs12507775	A	G	4623.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:150,136:0.48:286
chr4	74451092	rs12508661	T	G	4044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=0.682;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:136,106:0.44:242
chr4	74453656	rs10019146	G	A	3869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-1.748;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:320,217:0.40:537
chr4	74453691	rs10011419	T	C	2259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=1.145;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:228,130:0.36:358
chr4	74464285	rs10632092	T	TTG	2318.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:9,74:0.89:83
chr4	74464443	rs11368217	TA	T	372.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.62;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	74486052	rs1247591	C	G	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	74486245	rs1919471	C	T	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:133,160:0.55:293
chr4	74486264	rs1247590	G	A	8293.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr4	74714003	rs6815457	A	G	7507.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	74714084	rs16850078	T	C	14498.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr4	74719624	rs34446485	C	G	241.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	74719636	rs2233650	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.11;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	74719681	rs2233653	T	A	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	74719729	rs2233654	G	A	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	74719925	rs11723868	G	A	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	74736180	rs56078309	G	A	10627.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr4	74846990	rs116188786	T	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.857;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=27.182;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-9.991;QD=0.89;ReadPosRankSum=-2.409;SOR=2.794;set=HC	GT:AD:AF:DP	0/1:188,28:0.13:216
chr4	74863443	rs74505573	C	T	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=0.291;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr4	74863997	rs425535	T	C	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:309,141:0.31:450
chr4	75023609	rs6840665	T	C	13347.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,517:1.00:517
chr4	75023709	rs2289443	C	T	22667.77	.	AC=2;AF=1.00;AN=2;DB;DP=873;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,865:1.00:865
chr4	75040944	rs13116686	T	G	7144.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr4	75046310	rs4694183	A	C	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	75046372	rs561583	A	G	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	75046465	rs561844	C	G	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	75107255	rs4694184	T	C	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.52;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	75673363	rs4585380	G	A	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=1.193;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:70,43:0.38:113
chr4	75673455	rs7699847	T	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	75675841	rs11938093	A	T	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:301,168:0.36:469
chr4	75681217	rs11734944	A	G	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=-1.505;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:31,76:0.71:107
chr4	75719517	rs28549760	A	C	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-1.455;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:87,50:0.36:137
chr4	75719761	rs2278862	T	C	252.84	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr4	75937971	rs3822109	C	T	10792.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:250,498:0.67:748
chr4	75938179	rs3775527	G	A	14000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=1040;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=0.395;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:364,660:0.64:1024
chr4	75938236	rs1062293	A	G	7375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=0.654;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:211,336:0.61:547
chr4	75938373	rs919052	C	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,56:0.64:87
chr4	76415985	rs6833496	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr4	76416779	rs2045863	G	A	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=1.177;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:65,100:0.61:165
chr4	76442226	rs34218401	C	CT	110.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.253;QD=6.91;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr4	76446921	rs112121251	G	GATT	1505.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr4	76467668	rs35304407	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr4	76474866	rs6535531	T	C	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr4	76474892	rs6535532	A	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr4	76489345	rs2306175	C	T	6011.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:163,288:0.64:451
chr4	76525648	rs67518748	AT	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.524;QD=5.17;ReadPosRankSum=0.816;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	76570994	rs35597810	C	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr4	76571732	rs884871	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,36:0.84:43
chr4	76572191	rs2175766	A	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=0.573;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr4	76573688	rs13129043	G	A	108.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.14;ReadPosRankSum=-0.431;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr4	76580894	rs17000733	G	A	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:70,96:0.58:166
chr4	76649924	rs2280095	C	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	76650176	rs7657871	C	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	76670180	rs3853184	T	C	13979.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr4	76670339	.	A	G	284.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr4	76678576	rs4859552	A	G	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	76691828	rs324715	G	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	76695810	rs10588680	TTCTC	T	2798.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	76711200	rs67037358	TA	T	287.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;MQRankSum=0.516;QD=12.50;ReadPosRankSum=-1.694;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:3,20:0.87:23
chr4	76720885	rs13119659	T	C	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	76721414	rs13145290	C	G	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	76721459	rs4859409	G	A	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	76721671	rs35563762	C	CTTT	700.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=16.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=0.690;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr4	76721705	rs2271472	C	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	76722041	rs324727	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	76722353	rs324726	G	A	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	76722422	rs13133472	T	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	76725245	rs381067	G	T	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	76726528	rs11733253	T	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	76726539	rs11728073	C	T	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	76727576	rs11312984	GT	G	368.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	76730061	rs324688	T	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	76730258	rs324690	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=25.90;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	76730309	rs145662788	CTTTAGATTACTTACTAGCCGG	C	346.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=38.53;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	76734343	rs17284996	C	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.829;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr4	76785716	rs1394913	C	T	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.65;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	76785723	rs1394914	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.48;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	76785736	rs1394915	T	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	76787673	rs7654738	T	C	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.385;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	76788692	rs2135234	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	76793228	rs1394916	A	G	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	76794345	rs6858658	T	G	8342.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr4	76797950	rs13132709	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr4	76800729	rs13130621	A	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	76800991	rs68095351	A	AT	205.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=3.358;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.83;ReadPosRankSum=1.213;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr4	76804067	rs4859564	A	G	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	76805902	rs1976518	C	T	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	76805962	rs1976517	G	A	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	76805978	rs1566975	C	T	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	76809319	rs7691712	A	G	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	76809386	rs7691755	A	G	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	76811175	rs28436183	G	T	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=0.901;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:55,101:0.65:156
chr4	76812673	rs13116688	C	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr4	76838929	rs34444403	TA	T	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.435;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:118,41:0.26:159
chr4	76839729	rs2869456	A	C	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	76861137	rs6847716	G	C	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	76877402	rs9790644	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	76881392	rs67906710	C	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	76885423	rs2271527	T	C	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	76888235	rs12648437	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	76928729	rs2276885	A	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	76942943	rs3921	C	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	76943137	rs4859584	G	C	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	76943235	rs4859586	T	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	76943677	rs4859588	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	76943764	rs11298565	CT	C	327.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	76944491	rs4241578	T	C	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	76955914	rs6532111	T	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	76956188	rs4241580	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	76956289	rs5859488	C	CAA	3443.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	76956528	rs4859415	A	G	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	76957043	rs6817952	G	A	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	76957171	rs6819597	C	T	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr4	76996958	rs6532172	G	A	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	76997157	rs10674212	G	GT	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.892;QD=2.01;ReadPosRankSum=-1.950;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:104,42:0.29:146
chr4	77002934	rs61693363	G	A	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	77025273	rs7682766	C	T	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	77025810	rs17224545	G	A	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	77033721	rs62318929	G	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr4	77036369	rs1127695	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.74;ReadPosRankSum=-0.876;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr4	77036406	rs17001433	T	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr4	77038662	rs11726372	G	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	77038807	rs7657846	C	T	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=0.789;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:125,71:0.36:196
chr4	77038974	rs6532201	T	A	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.318;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:85,29:0.25:114
chr4	77039174	rs6813732	G	C	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=0.834;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:98,60:0.38:158
chr4	77039193	rs6840007	A	T	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.566;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:124,75:0.38:199
chr4	77045728	rs7692789	A	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.44;ReadPosRankSum=0.292;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr4	77045736	rs142448247	ATATT	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.853;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr4	77045762	rs7697701	T	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.092;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr4	77045777	rs10567711	TGG	T	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.870;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr4	77045985	rs10567712	TTCTAA	T	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr4	77051703	rs57765272	G	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr4	77052031	rs62300572	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	77053558	rs7698392	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.15;ReadPosRankSum=-0.256;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr4	77053562	rs4859619	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=4.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.05;ReadPosRankSum=0.553;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	77055474	rs11097244	A	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:93,52:0.36:145
chr4	77057501	rs11558468	A	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:179,107:0.37:286
chr4	77065223	rs11724260	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr4	77065264	rs11736522	C	T	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.231;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:144,56:0.28:200
chr4	77065318	rs36024409	C	CTGT	5677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=8.206;QD=11.02;ReadPosRankSum=-1.494;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:342,173:0.34:515
chr4	77065476	rs200401097	TAAA	T	1349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=5.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=1.404;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:132,65:0.33:197
chr4	77065518	rs11946345	T	C	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:124,59:0.32:183
chr4	77065580	rs11558469	T	C	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.062;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:118,56:0.32:174
chr4	77066887	rs61102074	G	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.197;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr4	77067133	rs735696	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.238;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.245;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr4	77067133	.	CAC	TAA	125	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=4;NR=1;PP=125;QD=35.6935749724;SC=AAAAGTCACCCACAGTACTAA;SbPval=0.79;Source=Platypus;TC=22;TCF=16;TCR=6;TR=5;WE=77067143;WS=77067123;set=Platypus	GT:AD:AF:DP	0/1:17,5:0.23:22
chr4	77067135	rs60015167	C	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.118;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.444;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr4	77067330	rs62300636	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr4	77067368	rs735697	A	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr4	77069679	rs3806733	G	T	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:203,87:0.30:290
chr4	77069733	rs3806732	T	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:82,32:0.28:114
chr4	77083070	rs3836573	TCAG	T	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.86;ReadPosRankSum=0.464;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	77091006	rs35369082	A	T	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.340;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:106,34:0.24:140
chr4	77091186	rs113848239	AAGCTG	A	1141.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr4	77095271	rs3821981	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=1.004;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr4	77095574	rs3733257	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr4	77095589	rs3733258	G	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr4	77097137	rs2289512	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	77105938	rs35947779	CA	C	1067.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.954;QD=13.69;ReadPosRankSum=2.356;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:45,33:0.42:78
chr4	77105952	rs59335499	A	T	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.246;QD=6.47;ReadPosRankSum=1.110;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr4	77117096	rs3733259	G	A	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr4	77134786	rs11547135	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr4	77199211	rs3817118	A	C	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.893;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:75,41:0.35:116
chr4	77201332	rs1036787	G	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	77201487	rs1036788	C	T	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=0.206;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:43,71:0.62:114
chr4	77204398	rs74988469	CAT	C	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.09;ReadPosRankSum=-1.242;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	77204500	rs1542096	C	T	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr4	77250030	rs112525409	C	T	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:184,82:0.31:266
chr4	77255246	rs114878412	G	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr4	77289047	rs5859510	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=5.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=0.283;SOR=1.793;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr4	77300408	rs116383392	G	A	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=1.746;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:79,113:0.59:192
chr4	77303898	rs6844174	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr4	77305346	rs17001890	A	G	4349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=1.392;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:101,210:0.68:311
chr4	77494534	rs6148528	CAATAAT	C	250.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	77494621	rs12108253	T	C	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.864;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr4	77637502	rs344122	A	C	1993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.190;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:265,123:0.32:388
chr4	77660162	rs344140	G	C	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:262,125:0.32:387
chr4	77660731	rs344141	C	G	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.314;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.986;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:366,144:0.28:510
chr4	77662248	rs344142	G	A	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:111,66:0.37:177
chr4	77663262	rs344144	T	C	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.134;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:133,53:0.28:186
chr4	77817362	rs2703131	T	C	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	77817874	rs2703130	G	T	14647.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,564:1.00:564
chr4	77818202	rs2645674	T	C	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	77818548	rs2703129	T	C	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	77818958	rs150366861	G	A	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:236,133:0.36:369
chr4	77917194	rs7356354	A	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr4	77917458	rs7685131	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr4	77940160	rs3816965	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=0.674;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr4	77949997	rs111698952	TGGTCCAA	T	1997.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=7.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.96;ReadPosRankSum=-0.328;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:36,51:0.59:87
chr4	77969825	.	GA	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.976;QD=0.51;ReadPosRankSum=0.792;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:91,24:0.21:115
chr4	77987351	rs4241602	A	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	77996521	rs4252767	A	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=0.891;SOR=1.954;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr4	78034309	rs4859743	A	C	11082.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:232,520:0.69:752
chr4	78669454	rs6855336	A	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	78694206	rs36124924	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr4	78697552	rs34417165	T	TA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.42;ReadPosRankSum=3.161;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr4	78740066	rs6811439	T	C	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=2.049;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:35,56:0.62:91
chr4	78740132	rs6828302	G	C	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=0.541;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:30,73:0.71:103
chr4	78740203	.	G	GACACACACACAC,GACACACACACACACACAC	1388.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=49;set=Intersection	GT:AF:DP	1/2:0.71,0.29:35
chr4	78783818	rs60135456	G	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr4	78830434	rs1801350	G	C	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=3.141;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:59,21:0.26:80
chr4	78871169	rs78003393	G	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=-1.465;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	78873823	rs1801521	A	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.82;ReadPosRankSum=0.566;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	79158843	rs10011303	G	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=7.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-1.012;SOR=0.168;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr4	79173515	rs34015316	C	CT	1784.73	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:217,142:0.40:359
chr4	79176325	rs1017647	C	T	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	79176361	rs1017646	T	C	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	79186047	rs6856362	G	A	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:42,95:0.69:137
chr4	79186171	rs2867014	G	A	6466.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	79187832	rs2008587	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	79187900	rs7694740	T	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr4	79188076	rs148509395	T	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:92,53:0.37:145
chr4	79188160	rs2008786	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr4	79188161	rs2198635	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr4	79188584	rs61999335	C	T	3025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=0.703;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:84,143:0.63:227
chr4	79202486	rs35419939	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.10;ReadPosRankSum=2.709;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr4	79204209	rs1378236	C	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	79205699	rs12504081	T	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr4	79205747	rs6815945	A	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr4	79229435	rs41537644	C	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr4	79238448	rs345515	T	C	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-1.351;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:33,42:0.56:75
chr4	79238649	rs345514	T	C	3324.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:56,155:0.73:211
chr4	79240063	rs345513	A	G	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:54,134:0.71:188
chr4	79240473	rs345511	C	T	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr4	79284694	rs6835769	C	T	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:68,175:0.72:243
chr4	79300993	rs12512164	G	A	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr4	79305148	rs7694602	C	G	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-0.919;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr4	79305177	rs7677133	T	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr4	79321770	rs144058401	A	ATC	30.74	.	AC=1;AF=0.500;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr4	79339950	rs12649596	G	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	79345650	rs1471752	A	G	545.22	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr4	79350200	rs112867538	C	CTGTG	2677.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:48,76:0.61:124
chr4	79359885	rs2170899	T	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr4	79366655	rs3749489	G	C	4294.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:100,203:0.67:303
chr4	79372856	rs10026662	A	C	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.387;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-0.580;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:44,57:0.56:101
chr4	79372930	rs753752	C	T	3602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=1.087;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:89,172:0.66:261
chr4	79385719	rs6851427	G	A	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:35,78:0.69:113
chr4	79387464	rs7684722	A	G	16140.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,633:1.00:633
chr4	79387586	rs34840208	A	G	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-1.888;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:66,43:0.39:109
chr4	79391020	rs7681619	C	T	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	79391036	rs1496602	T	C	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	79391256	rs7664505	T	C	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr4	79391424	rs6533688	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	79393269	rs28566963	T	C	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-0.845;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:95,61:0.39:156
chr4	79400868	rs11098194	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr4	79403146	rs34505482	A	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr4	79403747	rs924149	C	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr4	79409997	rs1496603	T	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	79417863	rs7674053	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.97;ReadPosRankSum=1.465;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr4	79420864	rs7677541	T	C	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-0.190;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr4	79420870	rs7695038	C	G	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-0.136;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr4	79428447	rs13141571	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.062;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.444;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr4	79428489	rs13118276	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr4	79428796	rs28739412	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr4	79432455	rs3749488	A	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:71,29:0.29:100
chr4	79443774	rs931604	T	A	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	79443850	rs931606	G	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.447;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:97,32:0.25:129
chr4	79444029	rs1496598	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr4	79455714	rs4975070	C	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:173,55:0.24:228
chr4	79455733	rs4975139	C	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:145,57:0.28:202
chr4	79455858	rs4975140	T	A	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	79460647	rs10591745	GA	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.883;QD=1.87;ReadPosRankSum=1.820;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr4	79516694	.	C	CT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.489;QD=3.20;ReadPosRankSum=0.597;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr4	79522598	rs6844356	T	C	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=0.460;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:30,60:0.67:90
chr4	79525584	rs201720405	A	ATTTT	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.62;ReadPosRankSum=0.944;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr4	79525590	rs200062214	CCCT	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.67;ReadPosRankSum=0.851;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr4	79531186	rs5944	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr4	79531202	rs5950	C	T	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr4	79531308	rs4612	C	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.668;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:94,24:0.20:118
chr4	79531381	rs1042515	T	G	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr4	79786974	rs2288254	T	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr4	79845007	rs13108247	C	A	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	79847634	.	GA	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=2.809;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr4	79854436	rs10857059	T	C	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	80898808	rs35798108	C	T	2839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=1.027;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:92,138:0.60:230
chr4	80905990	rs12647691	C	G	2547.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.43;ReadPosRankSum=-0.885;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:2,72:0.97:74
chr4	80905991	rs72653288	G	T	1148.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=-0.073;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:20,56:0.74:76
chr4	80906131	rs4444771	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	80975372	rs10745242	A	T	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	80976420	rs11730210	G	T	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-0.568;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:203,97:0.32:300
chr4	80977078	rs4594664	T	G	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	81222286	rs13119149	T	G	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	81529380	rs2903671	T	C	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr4	81529518	rs2867782	T	C	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:43,95:0.69:138
chr4	81884610	rs11452353	A	AT	1376.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.407;MLEAC=2;MLEAF=1.000;MQ=61.44;MQRankSum=0.000;QD=22.95;ReadPosRankSum=-0.473;SOR=2.208;set=HC	GT:AD:AF:DP	1/1:2,58:0.97:60
chr4	81884722	rs1052325	G	A	5617.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	81967188	rs6831040	C	T	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	81973224	rs12647814	A	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	81973260	rs1390318	C	T	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	82013619	rs59866145	A	AAAGGAAGG	186.90	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	82126121	rs17484474	C	G	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:85,157:0.65:242
chr4	82380475	rs143786421	T	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr4	83347309	rs34583014	TAAGA	T	901.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr4	83349697	.	CCT	C	43.73	.	AC=1;AF=0.500;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,2:0.67:3
chr4	83351912	.	C	T	508.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:69,27:0.28:96
chr4	83352177	rs10646358	C	CTT	2685.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	83369287	rs4285076	A	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	83375719	rs6853622	T	C	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	83411197	rs2276884	T	C	4449.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:122,215:0.64:337
chr4	83552809	rs3857138	A	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	83582064	rs3733228	G	T	3171.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:110,157:0.59:267
chr4	83582211	rs3733227	C	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	83626382	rs1876218	C	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr4	83626674	rs6853042	G	A	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	83778839	rs7658703	T	C	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	83784337	rs7666917	G	A	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	83787845	rs7356522	G	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	83788139	rs2290739	C	A	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	83788344	rs2045478	A	T	10179.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr4	83788562	rs2045479	T	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	83791373	rs10015419	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	83791649	rs3762902	G	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	83792464	rs10548601	TACACAC	TAC,T	2035.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/1:1.00:51
chr4	83792498	rs7685043	G	T	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	83792555	rs7686508	C	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	83793243	rs4693525	A	C	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	83793354	rs143845447	A	ATTTTG	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	83793368	rs11942312	C	T	137.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	83801849	rs6820324	G	A	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	83821786	rs183390891	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-0.499;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr4	83822334	rs982146	G	A	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	83827822	rs3214025	A	G	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	83829011	rs11731186	A	G	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=2.714;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:81,39:0.33:120
chr4	83838217	rs1031639	G	A	9653.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr4	83839799	rs6535411	A	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	83849581	rs6535412	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	83852065	rs985899	G	A	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	83857108	rs6535413	AT	GA	16273.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr4	83857402	rs6535415	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	83900043	rs6535422	A	G	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	83900260	rs7674484	A	G	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	83986380	rs10555484	TATTTA	T	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	83989516	rs2868747	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	83989571	rs5859858	G	GT	999.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	84188850	rs1129617	G	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,62:0.69:90
chr4	84189012	.	G	GT	21	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=8;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=21;QD=21.0;SC=CAGATTTAGTGTTTTTTTGTA;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=84189020;WS=84189002;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr4	84191031	rs6535454	A	G	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:198,110:0.36:308
chr4	84193366	rs6841889	C	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.690;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.544;SOR=1.424;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr4	84205618	rs13113787	A	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=2.003;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:82,34:0.29:116
chr4	84205872	rs6818847	C	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:81,49:0.38:130
chr4	84223461	rs4285078	G	C	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	84230619	rs11099592	T	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.108;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr4	84232104	rs6535455	T	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr4	84234174	.	C	CA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=8.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.152;SOR=2.765;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr4	84234229	rs6840520	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr4	84240654	rs12501123	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr4	84240680	rs12501124	G	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr4	84243549	rs4328905	A	G	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:118,69:0.37:187
chr4	84255641	rs6832713	G	C	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=2.587;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:12,40:0.77:52
chr4	84347363	rs4693624	A	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	84352750	rs12645412	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	84353154	rs2047210	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	84362443	rs4693088	T	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	84364751	rs7665103	A	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	84364808	rs6535473	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	84367050	rs11099599	G	A	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	84367286	rs11099600	G	A	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	84368225	rs11272773	GCATTGTGGCCAATGCCTGTAATCC	G	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	84370091	rs13141136	A	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	84370124	rs10718573	TA	T	221.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr4	84374480	rs1494961	C	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	84376743	rs6831595	A	T	15366.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,588:1.00:588
chr4	84377497	rs2279658	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.65;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	84380955	rs12505955	G	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	84381035	rs34365268	CA	C	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	84382058	rs34734728	CA	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr4	84383810	rs12642536	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	84393475	rs6535478	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	84397590	rs17352803	A	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	84397620	rs17352824	G	A	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	84401623	rs6838354	T	C	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	84403491	rs35608460	A	AG	41.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	84509465	rs11394944	T	TG	9967.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr4	84519775	rs71668661	AT	A	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=1.451;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:85,26:0.23:111
chr4	84525973	rs35602893	CT	C	3552.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr4	85166020	rs348700	C	T	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:30,75:0.71:105
chr4	85414741	rs13123447	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr4	85416797	rs2278671	T	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr4	85465390	.	ATT	A	1496.73	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.35;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	85530796	rs17009168	A	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	85555196	rs13102661	G	A	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	85560023	.	T	TA	265.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	85560024	.	T	TA	265.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	85560271	rs9784491	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	85612737	rs3747680	A	G	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:65,119:0.65:184
chr4	85625701	rs1838039	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	85634488	rs13108722	T	C	654.82	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr4	85647941	rs71670880	T	TA	240.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr4	85656350	rs6838727	T	C	46.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	85699579	rs12502409	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr4	85710823	.	C	CA	135.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.501;ClippingRankSum=-0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.48;ReadPosRankSum=-0.054;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr4	85710824	rs13137042	C	A,CA	1161.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=72.61;SOR=3.258;set=HC	GT:AD:AF:DP	1/2:0,8,8:0.50,0.50:16
chr4	85730914	rs6531775	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr4	85762385	rs2046402	T	C	3913.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:93,189:0.67:282
chr4	85765541	rs2869216	T	C	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr4	86844835	rs6824722	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chr4	86852207	rs60002814	AT	A	803.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-1.256;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:48,28:0.37:76
chr4	86863206	rs11367691	CT	C	378.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr4	86863467	rs11097083	T	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr4	86915848	rs10003909	T	C	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:207,99:0.32:306
chr4	86915923	rs11547776	G	A	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:213,106:0.33:319
chr4	86921598	.	C	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.421;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=45.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=2.588;SOR=4.255;set=HC	GT:AD:AF:DP	0/1:118,36:0.23:154
chr4	86921612	rs12505097	C	G	1949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=3.104;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:71,130:0.65:201
chr4	87019904	rs4133139	G	A	215.78	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr4	87024228	.	C	CTGTGTGTG	835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.132;QD=13.93;ReadPosRankSum=0.395;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:28,32:0.53:60
chr4	87463813	rs4529013	G	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:34,78:0.70:112
chr4	87463933	rs72665744	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.85;ReadPosRankSum=-0.566;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	87610696	.	G	A	811.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr4	87638364	rs4263359	C	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.53;ReadPosRankSum=0.929;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr4	87679513	rs71605616	G	C	1726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.383;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:260,111:0.30:371
chr4	87679642	rs1420624	A	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:80,34:0.30:114
chr4	87684031	rs710832	A	G	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.721;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-2.140;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:128,64:0.33:192
chr4	87706506	rs989902	T	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:115,46:0.29:161
chr4	87720470	rs11358237	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.89;ReadPosRankSum=0.876;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	87769929	rs13106574	T	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:91,35:0.28:126
chr4	87808810	rs3035472	G	GCA	2256.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr4	87809387	rs1550931	G	T	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	87811361	.	A	AG	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.72;ReadPosRankSum=1.611;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	87811364	.	A	AGGG	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.17;ReadPosRankSum=2.450;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	87812564	rs10011798	G	C	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-2.797;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:130,54:0.29:184
chr4	87812586	rs55723875	TA	T	5254.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:13,215:0.94:228
chr4	87812588	rs114349215	A	T	667.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.155;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:176,58:0.25:234
chr4	87812810	rs35305216	G	GA	37.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,8:0.19:42
chr4	87957989	rs340629	T	C	16230.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;MQRankSum=-0.077;QD=22.80;ReadPosRankSum=0.067;SOR=2.289;set=HC	GT:AD:AF:DP	1/1:2,710:1.00:712
chr4	88005203	rs236996	G	A	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-1.943;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:69,52:0.43:121
chr4	88048163	rs11448202	A	AT	2172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=1.873;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:63,129:0.67:192
chr4	88048316	rs11351193	C	T	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.569;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=33.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-1.497;SOR=3.145;set=HC	GT:AD:AF:DP	0/1:68,42:0.38:110
chr4	88048318	rs28700060	T	C	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=40.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.543;SOR=3.743;set=HC	GT:AD:AF:DP	0/1:68,39:0.36:107
chr4	88048328	rs112453934	A	C	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.005;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=46.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=0.648;SOR=5.087;set=HC	GT:AD:AF:DP	0/1:58,29:0.33:87
chr4	88052219	rs342467	T	C	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:65,115:0.64:180
chr4	88053085	rs342466	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr4	88056719	rs56703224	GT	G	1195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.391;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.233;QD=9.64;ReadPosRankSum=1.283;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:55,69:0.56:124
chr4	88056925	rs342464	A	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	88226231	rs11735092	T	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.68;ReadPosRankSum=0.316;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	88226480	rs6850131	A	C	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=0.145;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr4	88231339	rs59716219	CA	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.551;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr4	88231392	rs72613567	T	TA	1020.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr4	88234874	rs7698974	C	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	88238448	rs6531975	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	88239609	rs13118664	A	T	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr4	88258483	rs9991501	T	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	88261828	rs7679024	A	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:132,50:0.27:182
chr4	88296051	.	A	AT	76.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.98;ReadPosRankSum=-0.366;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr4	88312251	rs368478743	GT	G	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=11.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.707;SOR=2.617;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr4	88312293	rs28654511	A	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	88356111	rs28736552	T	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.270;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:59,22:0.27:81
chr4	88362904	rs13104303	C	T	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=-0.758;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr4	88363217	rs35607673	C	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr4	88395008	.	AGC	A	631.73	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:65,21:0.24:86
chr4	88401616	rs9933	A	G	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	88401735	rs34452129	CTA	C	2226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.623;QD=26.51;ReadPosRankSum=0.041;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,62:0.74:84
chr4	88403823	rs6857504	T	G	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	88412806	rs1130643	T	C	6168.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:225,299:0.57:524
chr4	88415636	rs1049544	G	C	8576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-0.404;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:202,406:0.67:608
chr4	88416188	rs13051	G	T	2349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=-1.933;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:49,113:0.70:162
chr4	88416223	rs8342	A	G	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	88533163	rs35939827	TTGTGTGTG	T	278.76	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	88533441	rs13131929	T	C	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	88533445	rs13131936	T	C	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.74;SOR=1.200;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	88534235	rs2736982	A	G	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr4	88535832	.	A	ATAGCAGTGACAGCAGCAG	16539.73	.	AC=2;AF=1.00;AN=2;DP=598;set=Intersection	GT:AD:AF:DP	1/1:3,339:0.99:342
chr4	88537737	rs2615489	G	A	5262.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	88577573	rs2615480	A	G	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=0.142;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:82,43:0.34:125
chr4	88578310	rs2615479	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.58;ReadPosRankSum=0.967;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	88584148	rs2615498	C	T	2798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=2.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.055;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:297,94:0.24:391
chr4	88584160	rs2615497	G	A	2722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.662;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:287,86:0.23:373
chr4	88584507	rs2627724	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr4	88732453	rs4693183	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	88732531	rs4693878	T	C	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	88732692	rs1054627	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:159,71:0.31:230
chr4	88732746	rs13144371	A	G	7795.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	88732763	rs17013181	A	G	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:76,133:0.64:209
chr4	88732911	rs1054628	C	T	4469.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:129,214:0.62:343
chr4	88732918	rs1054629	A	T	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:218,132:0.38:350
chr4	88755828	rs7698623	T	C	4863.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	88761259	rs13130999	A	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:125,65:0.34:190
chr4	88813269	rs71594826	G	GC	12532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-1.372;QD=25.42;ReadPosRankSum=1.437;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:180,313:0.63:493
chr4	88813270	.	C	CCAAT	2970	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=28;MQ=58.96;NF=25;NR=89;PP=2970;QD=20;SC=CAGGCATTGGCATGACCAAAG;SbPval=0.6;Source=Platypus;TC=173;TCF=40;TCR=133;TR=114;WE=88813279;WS=88813260;set=Platypus	GT:AD:AF:DP	0/1:59,114:0.66:173
chr4	88813271	.	A	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=7;MMLQ=28;MQ=59.13;NF=77;NR=89;PP=2962;QD=20;SC=AGGCATTGGCATGACCAAAGC;SbPval=0.62;Source=Platypus;TC=263;TCF=127;TCR=136;TR=166;WE=88813279;WS=88813260;set=Platypus	GT:AD:AF:DP	0/1:97,166:0.63:263
chr4	88813271	rs35753589	A	AATT	12759.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.506;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-1.336;QD=25.88;ReadPosRankSum=1.511;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:182,311:0.63:493
chr4	88813503	rs6532031	T	C	8642.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr4	88813875	rs3828554	T	C	5890.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:154,282:0.65:436
chr4	88815163	rs3061166	A	ATTAGG	8317.73	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:254,215:0.46:469
chr4	88898941	rs11728697	C	T	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=4.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-1.145;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:164,60:0.27:224
chr4	88902692	rs4754	T	C	10286.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:1,409:1.00:410
chr4	88903853	rs1126616	C	T	10742.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr4	89015857	rs2231164	C	T	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	89016782	rs2231162	A	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	89018565	rs2231157	A	G	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	89022362	rs2231153	C	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	89034589	rs138606116	C	T	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:148,182:0.55:330
chr4	89036353	rs2725261	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=0.605;QD=1.77;ReadPosRankSum=0.308;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr4	89079583	rs55927234	G	C	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:20,54:0.73:74
chr4	89311962	rs12510688	T	C	4742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.171;QD=12.96;ReadPosRankSum=-0.524;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:130,236:0.64:366
chr4	89352469	rs57584452	CT	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.124;QD=0.31;ReadPosRankSum=0.589;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:262,61:0.19:323
chr4	89384789	.	G	T	2419.77	.	AC=1;AF=0.500;AN=2;DP=176;set=Intersection	GT:AD:AF:DP	0/1:55,114:0.67:169
chr4	89415396	rs6857425	T	C	13288.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,530:1.00:530
chr4	89427070	rs142266505	CGTT	C	94.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr4	89527323	rs17799056	G	A	161.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	89571260	rs2860420	A	G	217.98	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	89575324	rs2860427	T	A	3499.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:126,174:0.58:300
chr4	89576581	rs2282593	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr4	89577214	rs2972040	A	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr4	89585235	rs2972018	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr4	89588689	rs3017921	C	T	483.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.99;ReadPosRankSum=-0.572;SOR=0.352;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr4	89599421	rs2604227	A	C	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	89607905	rs3737488	A	G	3103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=0.140;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:102,152:0.60:254
chr4	89618837	rs710834	T	C	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:84,167:0.67:251
chr4	89625427	rs1804080	G	C	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-1.210;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:20,54:0.73:74
chr4	89649659	rs9224	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr4	89653257	rs1801915	G	A	4848.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:140,223:0.61:363
chr4	89668859	rs7657817	C	T	4213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.096;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:82,200:0.71:282
chr4	89669110	rs7658690	G	A	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.316;QD=21.85;ReadPosRankSum=-0.287;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr4	89669115	rs7658214	A	G	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.316;QD=23.42;ReadPosRankSum=-0.467;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr4	89670155	rs3756050	C	T	4409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-1.487;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:123,213:0.63:336
chr4	89671810	rs3217628	A	AGG	1393.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr4	89689354	rs3756049	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	89702564	rs2290784	C	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr4	89711849	rs2290782	T	C	3512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-0.398;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:163,99:0.38:262
chr4	89711854	rs2290781	C	T	3381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=-0.352;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:158,93:0.37:251
chr4	89726073	rs3822075	T	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:114,55:0.33:169
chr4	89726283	rs2276936	A	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	89827492	rs13132415	G	T	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=-0.768;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:81,50:0.38:131
chr4	89978281	rs11097210	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.16;ReadPosRankSum=0.329;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr4	90034686	rs17015027	A	G	2906.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:85,141:0.62:226
chr4	90168882	rs13115988	G	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr4	90743317	rs3216147	T	TC	1588.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	90743331	rs10005233	C	T	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	90756550	rs7681440	C	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	90816023	rs1442140	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	90816790	rs2289515	T	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	90855932	rs1038140	T	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	90874095	rs3832297	A	AC	590.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	90874460	rs201798101	T	C	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=0.442;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:90,70:0.44:160
chr4	91230149	rs146032287	A	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:194,86:0.31:280
chr4	91234250	rs1466391	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	91246656	rs1870795	C	T	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	91246905	rs9284586	C	G	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	91246916	rs9284587	G	A	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	91549156	rs11303496	CT	C	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=1.426;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:55,43:0.44:98
chr4	91584811	rs6842658	A	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	91584992	rs6842926	A	G	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	91585003	rs62314392	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr4	91585060	rs6843110	A	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr4	91645179	rs62314447	A	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr4	91701720	rs2271592	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr4	91737018	rs3796673	C	T	2813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-0.548;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:140,148:0.51:288
chr4	91832609	rs6855137	G	C	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	92240031	rs9999729	C	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=0.809;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr4	92240080	rs9999885	G	A	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.588;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:43,50:0.54:93
chr4	92240278	rs7653977	A	T	912.31	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:4,38:0.90:42
chr4	92240317	rs7683541	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	92240802	rs6532289	C	T	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=1.244;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:29,52:0.64:81
chr4	92240892	rs6816636	C	A	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:83,139:0.63:222
chr4	92240925	rs6532290	T	G	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:91,151:0.62:242
chr4	92241031	rs6817404	G	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr4	92241071	rs6816883	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr4	92246344	rs3762827	G	A	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=1.646;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:63,63:0.50:126
chr4	92246541	rs1528572	T	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr4	93225752	.	GA	G	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=1.257;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr4	93511396	rs34144324	C	T	6420.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	93511481	rs2870639	G	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	94032125	rs2271385	G	C	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:52,64:0.55:116
chr4	94159770	rs13142615	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr4	94180159	rs7687990	A	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,55:0.69:80
chr4	94316763	rs1385405	T	G	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr4	94376675	rs6819866	A	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.000;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr4	94750058	rs10009502	C	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr4	95134165	rs10433970	C	G	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:23,71:0.76:94
chr4	95161996	rs2306803	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=0.048;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr4	95169682	rs10034781	G	T	2860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=-1.145;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:78,136:0.64:214
chr4	95169772	rs7435106	T	A	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=-1.981;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:31,45:0.59:76
chr4	95170839	rs11722476	G	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.377;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:11,31:0.74:42
chr4	95173779	rs7439869	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr4	95173810	rs61750822	A	G	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=1.871;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr4	95186055	rs2306802	A	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=-1.624;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr4	95197520	rs6823404	C	T	3288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.282;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:86,162:0.65:248
chr4	95202492	rs35361491	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.46;ReadPosRankSum=0.967;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	95206252	rs67631469	TTATC	T	2555.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:32,65:0.67:97
chr4	95255637	rs2289186	T	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr4	95376504	rs75841704	A	G	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:62,101:0.62:163
chr4	95498617	rs35078286	GAT	G	482.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr4	95500558	rs3805265	T	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=2.058;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr4	95503670	rs3857212	G	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.28;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	95503902	rs5013417	T	C	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:112,138:0.55:250
chr4	95506827	rs11722955	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr4	95508108	rs70946535	CT	C	857.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=8.084;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.864;QD=6.92;ReadPosRankSum=0.242;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:38,86:0.69:124
chr4	95508281	.	C	CT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=2.092;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:124,26:0.17:150
chr4	95529430	rs10033359	C	T	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	95529444	rs9307146	C	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	95531417	rs10017461	A	G	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=-0.239;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:38,77:0.67:115
chr4	95531562	rs10007050	T	C	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	95532453	rs28492872	G	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr4	95539267	rs966845	G	A	9222.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr4	95561459	rs7690296	A	G	2067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.504;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:68,103:0.60:171
chr4	95561651	rs10716970	GT	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.124;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr4	95575601	rs2280003	C	T	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.474;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:113,47:0.29:160
chr4	95578588	rs13107595	G	A	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr4	95585038	rs56921499	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr4	96035796	rs10622489	G	GAC	566.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr4	96073956	rs1365691	A	T	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,80:0.65:124
chr4	96075965	rs1434536	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr4	96091250	rs2241744	G	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr4	96091524	rs2241743	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr4	96106322	rs2289043	A	G	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:2,123:0.98:125
chr4	96123981	rs3733212	C	T	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	96127869	rs2276322	T	G	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	96128053	.	C	CTT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.850;QD=4.76;ReadPosRankSum=0.616;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr4	96137512	rs995062	T	C	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	96256616	rs4699423	A	G	4057.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:81,194:0.71:275
chr4	96256673	rs1843018	G	A	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr4	98761900	rs11735193	C	T	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=2.743;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:154,67:0.30:221
chr4	98864859	rs28417716	C	T	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr4	98893334	rs13147195	G	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=1.912;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr4	98893406	rs139143939	T	A	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.831;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:57,35:0.38:92
chr4	98902278	rs35146453	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	99027137	rs2865979	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr4	99027184	rs2903150	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.913;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr4	99049593	rs17558193	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.680;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr4	99055406	rs13328042	A	G	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	99055480	rs13328005	T	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=0.161;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr4	99064379	rs4699605	A	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr4	99339788	rs144058351	A	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr4	99399748	rs4303985	G	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr4	99408106	rs6838913	T	C	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	99802395	rs11729285	C	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.34;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	99808254	rs62323192	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	99824665	rs34445885	T	C	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	99850126	rs11723037	A	G	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	100001247	rs1154412	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	100006645	rs1154410	A	G	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:59,138:0.70:197
chr4	100009738	rs1154401	G	C	10445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=1.911;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:240,488:0.67:728
chr4	100009952	rs11434442	T	TGG	1463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=-1.426;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:37,49:0.57:86
chr4	100021124	rs2851279	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-1.160;QD=10.24;ReadPosRankSum=-1.481;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr4	100045500	rs1042365	T	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr4	100045574	rs1042364	T	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-1.370;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:13,43:0.77:56
chr4	100045616	rs1126673	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr4	100045647	rs2602894	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr4	100047812	rs1126672	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=0.371;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:110,43:0.28:153
chr4	100047929	rs10009145	G	A	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr4	100048327	rs9307234	G	A	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=26.54;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	100048414	rs1126671	T	C	5191.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:133,255:0.66:388
chr4	100048506	rs6836440	G	A	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.55;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	100048506	.	GCAT	ACAC,ACAT	990	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=26;MQ=60.0;NF=11,36;NR=19,70;PP=361,990;QD=13.8155958287;SC=CTGTGATGGAGCATAAAAGAA;SbPval=0.47;Source=Platypus;TC=106;TCF=36;TCR=70;TR=30,106;WE=100048517;WS=100048496;set=Platypus	GT:AF:DP	0/1:0.28:106
chr4	100048509	rs6813415	T	C	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-1.330;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:130,80:0.38:210
chr4	100052733	rs1126670	C	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr4	100052963	rs35019093	C	CT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.559;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr4	100053025	rs13129488	G	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	100057858	rs55878268	T	TA	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr4	100062675	rs13138294	T	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.162;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:63,22:0.26:85
chr4	100062819	rs2032349	A	G	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr4	100064166	rs5860566	G	GA	95.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.59;ReadPosRankSum=0.992;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr4	100064233	rs2213035	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr4	100064305	rs4699715	C	G	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	100064326	rs3919370	A	T	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:97,72:0.43:169
chr4	100065509	rs1800759	T	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr4	100128530	rs7661441	G	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	100131163	rs6833176	G	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr4	100134713	rs5860571	A	AT	912.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.314;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:140,37:0.21:177
chr4	100137292	.	ATTT	A	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=1.557;QD=9.16;ReadPosRankSum=-0.304;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr4	100140306	rs4699735	A	T	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	100205819	rs28364312	C	A	1715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.989;QD=11.29;ReadPosRankSum=0.090;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:103,49:0.32:152
chr4	100205829	rs28364311	T	G	1613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.984;QD=10.55;ReadPosRankSum=0.639;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:104,49:0.32:153
chr4	100212173	rs13134764	A	T	654.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.833;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:168,60:0.26:228
chr4	100212197	rs4147531	G	A	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:121,79:0.40:200
chr4	100231602	rs28914783	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.178;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,4:0.15:26
chr4	100235053	rs1789882	A	G	3019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-9.918;QD=5.53;ReadPosRankSum=0.024;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:368,178:0.33:546
chr4	100239319	rs1229984	T	C	8913.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=24.90;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr4	100257907	rs2298753	T	C	3729.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:75,163:0.68:238
chr4	100258007	rs1612735	T	C	10930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-1.272;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:245,521:0.68:766
chr4	100258054	rs1693453	C	A	15471.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,590:1.00:590
chr4	100258155	rs1614972	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr4	100260669	.	GCCCC	G	86.75	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.39;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr4	100260789	rs698	T	C	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.510;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:60,95:0.61:155
chr4	100261571	.	C	CA	53.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	100261578	rs78398191	T	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	100263834	rs1693481	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr4	100263942	rs1789912	C	T	7203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-5.896;QD=12.68;ReadPosRankSum=-0.676;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:219,349:0.61:568
chr4	100263965	rs1693482	C	T	7680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-4.130;QD=12.70;ReadPosRankSum=-0.138;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:235,370:0.61:605
chr4	100265957	rs283411	C	A	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:176,95:0.35:271
chr4	100266112	rs1693425	C	T	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:127,219:0.63:346
chr4	100266330	rs1693426	A	G	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:44,98:0.69:142
chr4	100268190	rs283413	A	C	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	100269045	rs17526590	G	A	6836.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:234,340:0.59:574
chr4	100341643	rs1154460	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr4	100341861	rs971074	C	T	3764.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:79,179:0.69:258
chr4	100348837	rs11480228	G	GT	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-0.625;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr4	100349204	rs75076500	A	C	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:33,98:0.75:131
chr4	100349669	rs1573496	C	G	5115.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:144,244:0.63:388
chr4	100356584	rs34925826	A	G	266.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	100443561	rs13142939	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	100443720	rs13143848	G	A	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.303;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:132,62:0.32:194
chr4	100443782	rs13119384	T	C	1503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.843;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:99,45:0.31:144
chr4	100443782	.	TCC	CCG	522	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=6;HapScore=1;MGOF=8;MMLQ=23;MQ=60.0;NF=10;NR=11;PP=522;QD=27.4032321363;SC=CAGTTACCCCTCCAGCACTGC;SbPval=0.44;Source=Platypus;TC=75;TCF=32;TCR=43;TR=21;WE=100443792;WS=100443772;set=Platypus	GT:AD:AF:DP	1/0:54,21:0.28:75
chr4	100443784	rs61732380	C	G	1503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.596;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:94,42:0.31:136
chr4	100443800	rs17029087	G	A	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-0.821;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:77,36:0.32:113
chr4	100445589	rs35080520	T	TC	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr4	100510859	rs991811	T	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:154,69:0.31:223
chr4	100515774	rs2306984	A	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.790;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr4	100516022	rs2306985	C	G	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=3.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.527;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:183,71:0.28:254
chr4	100532253	rs2298747	A	T	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-1.506;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr4	100542482	rs881981	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr4	100570681	rs4699384	T	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=3.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-1.471;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:124,49:0.28:173
chr4	100571001	rs1491242	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:120,58:0.33:178
chr4	100574195	rs4699385	A	G	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:188,98:0.34:286
chr4	100574821	rs79703522	C	G	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=3.050;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:308,135:0.30:443
chr4	100574890	rs186499567	C	A	6033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=1.055;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:171,291:0.63:462
chr4	100575711	rs17029277	C	T	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.161;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-0.768;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:224,115:0.34:339
chr4	100738035	rs715239	G	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr4	100774638	rs17029601	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr4	100782681	rs2282587	A	G	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:70,106:0.60:176
chr4	100784118	rs41275723	T	G	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-1.211;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:77,36:0.32:113
chr4	100784163	rs62305046	T	G	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.209;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:124,54:0.30:178
chr4	100784875	rs61359294	G	GT	269.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-0.597;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr4	100787665	rs28445732	T	G	3166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.78;ReadPosRankSum=-1.523;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:37,77:0.68:114
chr4	100787670	rs78793210	GA	TG	3202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.731;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.47;ReadPosRankSum=-1.307;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:41,80:0.66:121
chr4	100805207	rs6532835	C	A	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	100829746	rs7676564	T	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	100849574	rs17541426	A	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.792;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:174,65:0.27:239
chr4	101108875	rs58706659	GT	G	5575.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	101108877	rs201713115	T	C	5584.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	101109385	rs3749603	A	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	101338217	rs3733437	T	C	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.788;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:68,17:0.20:85
chr4	101368661	rs1157180	A	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-0.238;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:54,30:0.36:84
chr4	101946977	rs35434632	CA	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=10.738;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.438;QD=4.67;ReadPosRankSum=-0.506;SOR=2.962;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr4	101953322	rs2851060	C	T	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	102171591	rs2583404	T	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	102171606	rs2850958	A	G	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	102267821	rs2850327	AA	CG	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr4	102642453	rs10856962	T	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.07;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	102642526	rs12506517	T	C	7600.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr4	102750922	rs17266594	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr4	102751076	rs10516487	G	A	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:69,99:0.59:168
chr4	102751276	rs10516486	C	T	2224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.831;QD=11.77;ReadPosRankSum=-1.577;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:76,113:0.60:189
chr4	102751401	rs58497383	GTTT	G	779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.474;QD=22.93;ReadPosRankSum=-1.545;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:8,26:0.76:34
chr4	102791905	rs10516483	C	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr4	102839287	rs3733197	G	A	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-0.105;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:62,108:0.64:170
chr4	102839362	rs3733198	A	T	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.67;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	102942761	rs2631261	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.80;ReadPosRankSum=1.834;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	102965043	rs3113676	T	C	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	102992517	rs34184671	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr4	103174491	rs151370	A	G	1278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.397;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:178,79:0.31:257
chr4	103188709	rs13107325	C	T	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=1.080;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:184,97:0.35:281
chr4	103225513	rs11097773	T	C	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:97,136:0.58:233
chr4	103228734	rs35411892	C	T	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:65,125:0.66:190
chr4	103458888	rs3830689	TCA	T	97.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	103505784	rs10711129	CA	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.000;QD=3.29;ReadPosRankSum=1.787;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	103514658	rs1609993	T	C	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	103514741	rs4648050	T	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr4	103534560	rs3817685	C	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr4	103553372	rs75826658	C	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:31,60:0.66:91
chr4	103553447	rs5860729	GA	G	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.095;QD=8.04;ReadPosRankSum=-0.318;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr4	103553543	rs735403	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.63;ReadPosRankSum=-0.598;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	103555992	rs2272697	A	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,67:0.64:104
chr4	103556316	rs909349	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr4	103557077	rs2866413	G	A	3072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=-1.239;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:72,148:0.67:220
chr4	103557192	rs4547797	C	T	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-3.820;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:73,91:0.55:164
chr4	103557219	rs2866414	C	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=4.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-0.864;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:63,51:0.45:114
chr4	103557251	rs10027437	G	A	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.032;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=5.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=1.929;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:38,26:0.41:64
chr4	103557311	rs4496586	G	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr4	103561106	rs2293995	T	C	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-0.701;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:14,29:0.67:43
chr4	103594918	rs227276	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	103594938	rs227277	G	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr4	103610872	rs227365	A	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-1.642;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr4	103611845	rs227368	C	T	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:339,169:0.33:508
chr4	103611951	rs148718159	AAT	A	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.556;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:59,14:0.19:73
chr4	103612018	rs227369	G	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr4	103647651	.	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.779;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr4	103675108	rs223492	G	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=-0.455;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr4	103675159	rs35420022	CA	C	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=-0.627;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:18,45:0.71:63
chr4	103719893	rs223437	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr4	103719906	rs223436	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr4	103722873	rs57915035	CCT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.29;ReadPosRankSum=-1.440;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	103730179	rs3974641	T	TAA	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.449;QD=7.40;ReadPosRankSum=0.709;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr4	103732704	rs201561589	T	TG	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.16;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	103732845	rs223414	A	C	781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=0.537;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:28,41:0.59:69
chr4	103746753	rs3774997	C	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr4	103747427	rs199965635	CT	C	1558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.24;ReadPosRankSum=3.724;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:33,48:0.59:81
chr4	103747541	rs2023532	G	A	8435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-1.642;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:233,399:0.63:632
chr4	103789782	rs2198199	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr4	103789810	rs223333	C	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr4	103790186	rs223332	G	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr4	103806308	rs35282200	CTA	C	3339.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:48,85:0.64:133
chr4	103866480	rs3974494	G	A	5354.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:130,261:0.67:391
chr4	103911069	rs2715591	C	A	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	103911159	rs7672319	A	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr4	103941410	rs10676315	G	GTTT	737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.680;QD=16.39;ReadPosRankSum=-0.202;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr4	103949944	.	ATCTTT	A	1272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=0.793;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:68,37:0.35:105
chr4	104041293	rs2720453	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.80;ReadPosRankSum=0.628;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr4	104059542	rs2243682	G	A	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-2.286;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:261,112:0.30:373
chr4	104061845	rs3052340	CTTA	C	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr4	104063071	rs2711898	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr4	104066461	rs2615542	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:83,44:0.35:127
chr4	104068898	rs2711894	G	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr4	104079424	rs2251322	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.339;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr4	104082349	rs2251634	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=-0.370;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr4	104102563	rs17217250	T	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.394;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr4	104103897	rs4698879	C	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.266;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:81,34:0.30:115
chr4	104104186	rs3835129	T	TACTA	118.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	104107043	.	C	T	22	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=27;MQ=60.0;NF=1;NR=3;PP=22;QD=14.1928031368;SC=AAAATAAATCCTTAGGGCAGA;SbPval=0.86;Source=Platypus;TC=15;TCF=6;TCR=9;TR=4;WE=104107051;WS=104107033;set=Platypus	GT:AD:AF:DP	0/1:11,4:0.27:15
chr4	104117191	rs2290943	A	G	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-0.305;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:106,46:0.30:152
chr4	104119587	rs2276975	C	T	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=3.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-1.607;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:79,35:0.31:114
chr4	104510766	rs2765	G	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	105393361	rs4413407	A	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	105412464	.	TGCCGCCGCCGCCGCCGCCGCC	T	2235.73	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr4	106157698	rs144386291	T	C	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-0.908;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:184,110:0.37:294
chr4	106190732	rs59519484	C	A	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.541;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-0.302;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:181,81:0.31:262
chr4	106196834	rs146348065	C	T	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:180,120:0.40:300
chr4	106197000	rs62621450	A	G	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:180,90:0.33:270
chr4	106197750	rs60786079	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:51,21:0.29:72
chr4	106359158	rs139651138	C	T	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:71,25:0.26:96
chr4	106369130	rs146932766	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.129;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr4	106377231	rs28712035	G	C	3165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=0.581;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:316,184:0.37:500
chr4	106474096	rs6533206	T	C	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	106510470	rs2276970	A	G	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:159,72:0.31:231
chr4	106534425	rs3214769	CAGAA	C	508.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr4	106534691	rs2305212	A	G	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:93,67:0.42:160
chr4	106569628	rs56849622	G	A	69.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.99;ReadPosRankSum=-0.253;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	106580340	rs13147012	A	G	6740.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr4	106588509	rs10019217	C	T	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:58,111:0.66:169
chr4	106640184	rs3796926	C	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=1.609;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:33,35:0.51:68
chr4	106848314	rs4546247	C	T	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	106848703	rs10856978	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	106859549	rs35132891	G	C	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	106861557	rs4627867	A	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	106861730	rs4340795	A	G	6083.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.123;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.83;ReadPosRankSum=0.975;SOR=0.243;set=HC	GT:AD:AF:DP	1/1:1,244:1.00:245
chr4	106888263	rs4597836	A	C	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=21.34;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	106892210	rs4449421	T	G	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	106892254	.	A	AT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.003;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr4	107037315	.	CA	C	1248.73	.	AC=1;AF=0.500;AN=2;DP=181;set=Intersection	GT:AD:AF:DP	0/1:124,54:0.30:178
chr4	107154273	rs13138528	T	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	107156365	rs7668276	C	G	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	107157699	.	T	TA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.078;QD=2.62;ReadPosRankSum=-0.573;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr4	107165685	rs58634260	TA	T	124.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.47;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	107168431	rs3775091	G	C	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	107172377	rs13113845	C	G	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	107246190	rs11544777	G	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.420;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr4	108048977	rs2158182	A	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr4	108535335	rs9569	C	T	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	108553048	rs3756270	G	C	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	108575989	rs3733633	G	A	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr4	108581002	rs11291153	GC	G	1708.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	108608100	rs45502094	CTCTAACACT	C	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	108615226	rs371693146	CT	C	1599.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.68;QD=20.25;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	108622169	rs71590193	A	AT	580.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr4	108622241	rs17510783	C	T	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=-1.994;QD=6.85;ReadPosRankSum=-0.008;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:72,46:0.39:118
chr4	108622475	rs13110240	C	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:79,44:0.36:123
chr4	108641169	rs2074372	C	G	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	108641300	rs973126	T	C	20523.77	.	AC=2;AF=1.00;AN=2;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,794:1.00:794
chr4	108641464	rs1319253	AA	GC	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	108824655	rs17563907	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr4	108853384	rs6849089	C	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr4	108866058	rs10002671	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr4	108868515	rs6856745	T	C	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr4	108926170	rs3775973	T	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	108931039	rs4956145	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.01;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	108931133	rs11388783	C	CT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.006;QD=4.54;ReadPosRankSum=-0.579;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr4	108935770	rs7677408	T	C	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=-0.789;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,68:0.76:90
chr4	108935871	rs4956147	G	A	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	108944579	rs4956032	C	T	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	108944821	rs4956033	C	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	108944846	rs4956034	A	G	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	108969590	rs4245927	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	108985388	rs4613638	A	G	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	108991979	rs2276335	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	108999300	rs4956156	G	T	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	108999366	rs4956157	G	A	10981.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr4	109000536	rs6819640	T	C	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	109002986	rs7681524	T	C	572.85	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr4	109010207	rs16996935	A	G	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.60;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	109461985	rs17583662	A	G	2222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=2.632;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:83,111:0.57:194
chr4	109478108	rs11731416	C	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	109541499	rs7677415	C	T	10041.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr4	109541603	rs3796936	T	A	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	109541616	rs3796935	T	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	109541661	rs3796934	T	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	109546420	.	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.462;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr4	109576843	rs2851380	G	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	109588238	rs2851374	G	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	109664819	rs6533381	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.19;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	109664819	.	TG	CC	143	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=3;MGOF=12;MMLQ=27;MQ=60.0;NF=8;NR=2;PP=143;QD=19.6467874862;SC=CAACAATAAGTGAACCTAATA;SbPval=0.78;Source=Platypus;TC=15;TCF=11;TCR=4;TR=10;WE=109664828;WS=109664809;set=Platypus	GT:AD:AF:DP	1/1:5,10:0.67:15
chr4	109664820	rs7664898	G	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=1.675;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr4	109664895	rs80066704	T	C	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,58:0.63:92
chr4	109669319	rs33958723	TA	T	658.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr4	109669413	rs77835534	A	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr4	109670312	rs1078132	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr4	109670701	rs5860943	C	CA	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr4	109672194	rs2276971	G	A	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:69,137:0.67:206
chr4	109674116	rs1377210	A	G	4641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=-1.849;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:130,226:0.63:356
chr4	109677752	rs75900639	A	G	343.88	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr4	109681267	rs61525227	A	G	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:54,99:0.65:153
chr4	109683509	rs57603342	A	G	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-2.164;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:21,59:0.74:80
chr4	109683688	rs3733622	G	A	1008.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.93;ReadPosRankSum=-0.873;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:2,42:0.95:44
chr4	109735133	rs2305436	T	C	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.713;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-0.362;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr4	109735146	rs2305435	T	G	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-1.692;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr4	109735209	rs11733727	T	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr4	109745336	rs7689008	T	G	4683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-0.580;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:114,226:0.66:340
chr4	109748227	rs13104307	C	T	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-0.056;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:96,50:0.34:146
chr4	109759469	rs4956063	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.699;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr4	109762918	rs11942576	C	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.345;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:49,30:0.38:79
chr4	109766177	rs10015534	G	C	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	109766290	rs11098004	T	G	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	109767453	rs5860952	C	CA	5499.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	109769844	rs13130308	C	T	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	109769899	rs13135591	C	T	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	109782004	rs72668336	T	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-1.908;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr4	109783755	rs146165021	ACAG	A	1827.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:36,47:0.57:83
chr4	109790319	rs72668338	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:150,67:0.31:217
chr4	109790346	.	C	CAATAAATA	1668.73	.	AC=1;AF=0.500;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr4	109810988	rs72668354	A	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:68,34:0.33:102
chr4	109841743	rs17596705	C	T	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:103,80:0.44:183
chr4	109841889	rs5860955	G	GA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=0.601;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr4	109842038	rs2030844	T	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=-0.508;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	109863370	rs17531474	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.181;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:153,68:0.31:221
chr4	109895718	rs70949061	GA	G	323.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr4	109931455	rs376144125	AC	A	475.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.82;ReadPosRankSum=-0.465;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr4	109931457	rs4995475	C	T	484.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.08;ReadPosRankSum=-0.809;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr4	109969183	rs3096481	T	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr4	109969337	rs3108954	G	T	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:49,64:0.57:113
chr4	109969456	rs3096482	T	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.28;ReadPosRankSum=1.309;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	110370867	rs13123618	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	110384047	rs70949082	G	GCTTTT	3219.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=55.51;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	110412619	rs111569393	G	A	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:53,77:0.59:130
chr4	110580084	rs1543812	G	T	206.22	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr4	110581324	rs34754720	A	AT	802.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr4	110581363	rs4698744	T	A	2299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-0.615;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:59,109:0.65:168
chr4	110661937	rs551	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	110670807	rs7441380	G	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	110678819	rs5860990	CA	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.326;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr4	110678925	rs11098044	T	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	110678979	rs146158558	T	TTTTAA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	110679002	rs7437142	G	T	266.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	110681505	rs2298749	C	T	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=2.609;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:306,164:0.35:470
chr4	110681618	rs4382037	C	T	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	110682953	rs17610314	A	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=1.598;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr4	110737389	rs2276326	T	C	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	110737549	rs6828254	G	A	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	110739212	rs143266987	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr4	110745425	rs3188897	G	A	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	110765361	rs7681770	T	G	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	110765372	rs7657133	A	G	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	110773067	rs4698797	G	A	7839.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr4	110786290	rs7679048	C	T	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	110786517	rs7679303	A	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	110790911	rs764205	A	T	6311.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	111398208	rs10004516	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr4	111398252	rs11734805	C	A	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	111437103	rs2348432	C	T	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=24.98;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	111454153	rs671841	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	111542124	rs2278783	G	A	8726.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr4	111542154	rs2278782	G	A	11973.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.210;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr4	111543341	rs28510307	T	C	106.85	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	111781650	rs10213399	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	113066831	rs10002700	G	A	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	113107829	rs371585740	CT	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.922;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.252;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr4	113178966	.	T	TA	65.73	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr4	113344685	rs1989924	C	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=1.361;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr4	113344826	rs1989925	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:155,57:0.27:212
chr4	113344925	rs1989926	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr4	113346996	rs10017209	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.349;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=1.754;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:39,22:0.36:61
chr4	113347496	rs9994944	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr4	113349020	rs4834277	C	G	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr4	113350154	rs35133578	C	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr4	113350415	rs11944513	C	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:111,71:0.39:182
chr4	113350498	rs17444613	C	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr4	113351521	rs1029447	G	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr4	113352397	rs2074388	G	A	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	113352628	rs13148353	A	G	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	113352899	rs2074379	G	A	5469.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	113353285	rs11726117	T	C	8534.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.86;ReadPosRankSum=-1.013;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:2,328:0.99:330
chr4	113353842	rs6841595	A	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	113356259	rs3815071	C	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.75;ReadPosRankSum=0.565;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr4	113356495	rs11098156	G	T	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=0.285;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:19,44:0.70:63
chr4	113359703	rs231247	A	G	8010.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr4	113359883	rs231248	A	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr4	113362316	rs1486868	A	G	5745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=-0.265;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:116,270:0.70:386
chr4	113436044	rs901474	T	G	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	113483446	rs6838559	C	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr4	113483576	.	C	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=1.876;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:174,51:0.23:225
chr4	113502707	rs58897804	T	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr4	113539969	rs7696816	T	C	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:25,79:0.76:104
chr4	113549989	rs12054518	G	A	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr4	113554385	rs13104310	A	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	113565440	rs35051735	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr4	113568743	rs71597609	A	ATTTTAATTAATTAGT	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=1.304;QD=16.59;ReadPosRankSum=0.416;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr4	113569135	rs13136737	G	T	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:73,120:0.62:193
chr4	113569695	rs114318553	T	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:83,33:0.28:116
chr4	113570639	rs4513633	C	A	176.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	113574409	rs35865138	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr4	113578326	.	T	TTG	28	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.4998;HP=3;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=1;PP=28;QD=31.0;SC=AGTCATAGTTTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=7;TCF=1;TCR=6;TR=1;WE=113578334;WS=113578316;set=Platypus	GT:AD:AF:DP	1/0:6,1:0.14:7
chr4	114028149	rs17625836	G	A	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr4	114028168	rs13134980	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.10;ReadPosRankSum=2.100;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	114067145	rs7689214	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:103,40:0.28:143
chr4	114067233	rs3112981	G	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr4	114072148	rs10647173	G	GAA	469.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr4	114072149	rs61478665	T	A	478.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr4	114161619	rs45616931	T	C	1315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.259;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:147,80:0.35:227
chr4	114176848	rs34725737	GA	G	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.216;QD=2.15;ReadPosRankSum=-0.166;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr4	114213551	rs55706912	C	T	6000.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:196,283:0.59:479
chr4	114254454	rs369809224	ATG	A	104.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr4	114263101	rs62313243	T	G	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr4	114267023	rs9968405	G	A	6927.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.874;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=3.622;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=0.380;SOR=0.677;set=HC	GT:AD:AF:DP	1/1:1,273:1.00:274
chr4	114286357	.	ATGTG	A,ATG	2617.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=2.687;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.99;ReadPosRankSum=1.615;SOR=1.814;set=HC	GT:AD:AF:DP	1/2:3,32,62:0.33,0.64:97
chr4	114309839	rs6533681	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=0.257;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	114310106	.	C	CTG	61	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=3;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=61;QD=21.6666666667;SC=GCATGCATGCCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=3;WE=114310115;WS=114310096;set=Platypus	GT:AD:AF:DP	0/1:11,3:0.21:14
chr4	114426077	rs5861139	CA	C	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.849;QD=6.57;ReadPosRankSum=-0.127;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:28,36:0.56:64
chr4	114426315	rs4834348	G	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr4	114472984	rs2285704	T	C	32.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.96;ReadPosRankSum=-0.000;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr4	114530150	rs3764805	T	A	73.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.77;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	114530230	rs3764806	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr4	114582860	rs3775975	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=0.000;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	115544714	rs6851610	A	G	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr4	115577997	rs34115976	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr4	115586696	rs4833463	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	115589159	rs6831964	C	T	155.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	115589302	rs11098261	A	G	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr4	115898200	rs56019717	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr4	115898522	rs13115130	A	T	97.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr4	118975146	rs13152576	C	T	1622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=1.049;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:148,94:0.39:242
chr4	119035948	rs5861378	T	TC	5857.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.246;QD=24.61;ReadPosRankSum=1.037;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:4,234:0.98:238
chr4	119064668	rs3749506	G	A	78.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	119147975	rs2271577	A	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.238;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:58,25:0.30:83
chr4	119161619	rs641962	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	119161795	rs617430	G	A	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:39,93:0.70:132
chr4	119174640	rs5861382	CT	C	261.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.45;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	119176703	rs7684275	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:73,34:0.32:107
chr4	119200274	rs658642	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.43;ReadPosRankSum=0.670;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr4	119217114	rs788665	C	G	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	119219909	rs28661939	C	A	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.504;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:206,109:0.35:315
chr4	119237348	rs2292597	T	C	1917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.273;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:262,122:0.32:384
chr4	119256617	rs3215324	C	CT	1596.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:140,93:0.40:233
chr4	119273712	rs13119545	C	G	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:47,105:0.69:152
chr4	119409830	rs112805522	A	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	119414431	rs17595090	A	T	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:146,58:0.28:204
chr4	119414828	rs145087150	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.904;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=6.069;MLEAC=1;MLEAF=0.500;MQ=47.14;MQRankSum=-5.522;QD=3.94;ReadPosRankSum=0.794;SOR=1.632;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr4	119428087	rs77576167	T	A	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-2.953;QD=3.56;ReadPosRankSum=0.738;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:79,30:0.28:109
chr4	119428155	.	CT	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.509;QD=1.43;ReadPosRankSum=-2.804;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr4	119436576	rs371723815	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-2.063;QD=2.71;ReadPosRankSum=0.560;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr4	119475430	rs2787272	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-4.018;QD=0.77;ReadPosRankSum=0.631;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr4	119609039	rs9968326	G	A	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	119613045	rs6821350	T	G	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	119615543	rs13111664	T	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	119625000	rs3733517	A	G	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	119625273	rs298995	G	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	119653822	rs2046779	G	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	119659284	rs7653962	T	A	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	119666217	rs35951660	T	TA	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.582;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=3.365;QD=1.64;ReadPosRankSum=-0.436;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:114,36:0.24:150
chr4	119674051	rs71595318	G	GA	1415.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:11,77:0.88:88
chr4	119689549	rs11412557	C	CTT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=0.071;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr4	119736598	rs6843524	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=2.165;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr4	119944566	rs138607209	C	CT	2842.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	119947961	rs70944826	AAAG	A	15633.73	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=44.80;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr4	119950975	rs111780874	A	AT	623.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr4	119951647	rs7698598	A	G	16978.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:1,646:1.00:647
chr4	119952955	rs61732241	C	T	11586.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr4	120071926	rs6853794	T	C	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	120072233	rs6828875	G	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	120072238	rs6828349	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	120079159	rs11721566	A	G	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	120133549	rs12644283	T	G	7361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-0.228;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:206,352:0.63:558
chr4	120133712	rs6851130	G	A	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	120161156	rs79063845	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	120177522	rs7668372	G	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-1.246;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:71,35:0.33:106
chr4	120177708	rs7668423	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.919;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr4	120192436	rs199580098	A	AT	472.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:76,41:0.35:117
chr4	120194718	rs35610634	G	GT	2513.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.196;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.564;QD=18.62;ReadPosRankSum=0.191;SOR=0.634;set=HC	GT:AD:AF:DP	1/1:11,124:0.92:135
chr4	120194799	rs61730006	G	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.326;QD=3.45;ReadPosRankSum=2.446;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:58,20:0.26:78
chr4	120214291	rs17517054	T	C	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:174,103:0.37:277
chr4	120220085	rs111948904	A	AAAAC	615.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr4	120241902	rs1799883	T	C	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-0.111;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr4	120243352	rs1397614	C	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:95,45:0.32:140
chr4	120446652	rs141680876	T	TAC	779.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:57,28:0.33:85
chr4	120446868	rs3832310	GA	G	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.055;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr4	120463856	rs2622497	A	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	120474687	rs200145605	T	TA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.720;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr4	120488167	rs41278071	A	G	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:89,61:0.41:150
chr4	120528064	rs17051276	A	C	2620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=0.066;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:282,155:0.35:437
chr4	120528327	rs3733526	G	A	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:54,113:0.68:167
chr4	120528524	rs10536068	ATCT	A	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.69;ReadPosRankSum=1.785;SOR=1.521;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr4	120550059	rs11342908	GC	G	3088.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	120550125	rs10639733	A	AGGC	3729.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:49,92:0.65:141
chr4	120550144	rs2953291	A	G	4283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=1.529;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:49,113:0.70:162
chr4	120983259	rs2908989	T	C	11331.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.70;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr4	121737767	rs2136998	G	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	121828519	rs1901135	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	121957734	rs1397645	T	C	7980.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr4	121958091	rs3733558	T	G	9898.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr4	121958187	rs3822230	A	G	10587.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr4	121958697	rs3733560	G	A	3443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=4.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=1.208;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:55,154:0.74:209
chr4	121966807	rs2276959	C	T	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	122085203	rs77437633	A	G	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:48,81:0.63:129
chr4	122137662	rs7663440	T	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	122148787	rs2044970	A	G	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	122257942	rs4558890	A	C	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr4	122258063	rs4490481	A	G	6691.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	122261874	rs13104309	G	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	122301350	.	GA	G	1179.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=2.861;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=5.434;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=2.159;QD=28.09;ReadPosRankSum=3.114;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:4,38:0.90:42
chr4	122301352	.	GAGAGAGA	G	1137.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.457;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.763;QD=23.70;ReadPosRankSum=2.859;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:9,39:0.81:48
chr4	122301622	rs17438900	A	C	10540.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr4	122590883	rs71599153	T	TA	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.642;QD=2.14;ReadPosRankSum=-0.144;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:122,49:0.29:171
chr4	122599249	rs3756281	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.48;ReadPosRankSum=-0.210;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	122599447	rs13109053	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr4	122599755	rs3733649	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr4	122617493	rs2306413	T	C	40.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr4	122681373	rs4342205	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr4	122683007	rs4370153	G	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:107,57:0.35:164
chr4	122687238	rs13108419	A	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:119,54:0.31:173
chr4	122687491	rs4833772	G	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-2.504;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr4	122722693	rs3811742	C	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:265,110:0.29:375
chr4	122726029	rs72680748	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr4	122735225	rs141260260	C	CTTA	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	122739183	rs3217772	C	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:61,26:0.30:87
chr4	122742217	rs769242	T	C	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	122749436	rs2706793	G	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:89,35:0.28:124
chr4	122760968	rs12510839	G	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr4	122791601	rs2271176	G	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr4	122824052	rs11732666	C	T	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.103;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:221,58:0.21:279
chr4	122825364	rs3762839	A	C	142.79	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	122831281	rs1507993	C	T	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.943;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:58,35:0.38:93
chr4	122833314	rs906496	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.255;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr4	122872719	rs1396082	G	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:173,95:0.35:268
chr4	123108762	rs7670081	G	A	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	123130886	rs7656479	A	G	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=1.172;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:52,36:0.41:88
chr4	123140739	rs6534345	G	C	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	123145751	rs7658836	T	A	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=0.579;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:163,77:0.32:240
chr4	123150286	rs6848868	T	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr4	123175900	rs66570627	G	A	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr4	123176566	rs45500303	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.922;QD=3.32;ReadPosRankSum=1.866;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr4	123185682	rs7664976	C	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	123187869	rs7683061	C	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:54,20:0.27:74
chr4	123192383	rs45574236	T	C	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:184,99:0.35:283
chr4	123222417	rs10718670	TA	T	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=1.007;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:35,33:0.49:68
chr4	123229132	rs7688384	C	T	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:98,44:0.31:142
chr4	123246971	.	G	GT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.126;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr4	123333671	rs2086346	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr4	123342616	rs1383043	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr4	123536963	rs4833837	G	A	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	123662997	rs309368	A	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,41:0.40:102
chr4	123664204	rs309370	G	A	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:232,118:0.34:350
chr4	123664427	rs13135766	G	C	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.446;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:193,62:0.24:255
chr4	123664446	rs13135778	G	A	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.764;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:178,68:0.28:246
chr4	123664457	rs13135445	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:193,72:0.27:265
chr4	123664919	rs13102440	A	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:158,69:0.30:227
chr4	123748616	rs2922979	C	G	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	123838758	rs12648093	A	G	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	123843716	rs13134412	T	C	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,247:0.99:249
chr4	123854495	rs1563706	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	123868279	rs11098682	G	T	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	123949556	rs1472949	G	A	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	124323738	rs300574	T	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr4	126237971	rs72928772	C	T	9279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=0.014;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:211,420:0.67:631
chr4	126238924	rs6847454	A	T	8954.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:202,418:0.67:620
chr4	126239986	rs1039808	C	T	5149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=1.101;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:144,245:0.63:389
chr4	126240510	rs2940779	T	C	5290.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:136,251:0.65:387
chr4	126241871	rs2710555	C	T	5005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=2.460;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:165,246:0.60:411
chr4	126315034	rs925243	T	C	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	126315282	rs925242	A	G	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	126329526	rs10518464	C	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr4	126329789	rs958415	T	C	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	126335978	rs4605670	G	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	126336990	rs10010000	G	T	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	126337555	rs7675556	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	126355609	rs7656135	T	G	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	126369872	rs988863	G	C	12395.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr4	126372742	rs1567047	G	A	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.231;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:139,60:0.30:199
chr4	126372975	rs76491994	A	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:129,59:0.31:188
chr4	126373789	rs12650153	G	A	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	126384905	rs10010645	A	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.96;ReadPosRankSum=0.967;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	126389627	rs6814158	A	G	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	126390010	rs35304021	A	G	190.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.09;ReadPosRankSum=-1.645;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr4	126390022	rs34927272	A	G	73.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.76;ReadPosRankSum=-1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	126397321	rs17009761	C	T	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:84,127:0.60:211
chr4	126400825	rs1506361	G	T	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	126402890	rs6824160	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:55,104:0.65:159
chr4	126402921	rs11098815	T	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.346;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:73,34:0.32:107
chr4	126412575	rs1014866	A	G	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	128544514	rs12650360	C	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr4	128544696	rs4834207	A	G	6093.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=3.274;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=1.576;SOR=0.429;set=HC	GT:AD:AF:DP	1/1:1,237:1.00:238
chr4	128554404	rs2255457	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr4	128565000	rs3749507	A	G	2306.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:184,128:0.41:312
chr4	128584580	rs4833380	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.276;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr4	128621272	rs12331481	A	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=-1.008;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr4	128627050	rs7683627	C	T	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	128632023	rs2305956	A	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr4	128665981	rs769293	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.113;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr4	128688444	rs3214038	C	T	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr4	128689936	rs2305958	A	G	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-1.581;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:109,55:0.34:164
chr4	128723042	rs1380154	T	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.981;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr4	128729341	rs143804133	T	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr4	128803159	rs3811741	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr4	128807219	rs3811740	T	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:129,57:0.31:186
chr4	128812230	rs200615480	G	GT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=1.291;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr4	128814964	rs17012739	G	T	1926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=1.155;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:294,125:0.30:419
chr4	128817905	.	G	GT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=3.052;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.981;QD=0.63;ReadPosRankSum=-0.104;SOR=0.279;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr4	129012181	rs2306054	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-2.480;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr4	129012638	rs1064205	A	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:61,25:0.29:86
chr4	129029009	rs34678812	G	GA	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:75,38:0.34:113
chr4	129043204	rs12508837	C	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=0.418;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr4	129043286	rs3733320	C	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:94,38:0.29:132
chr4	129043601	rs3832282	T	TG	2820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=14.886;MLEAC=1;MLEAF=0.500;MQ=61.25;MQRankSum=2.606;QD=28.49;ReadPosRankSum=1.046;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:33,66:0.67:99
chr4	129043614	rs3733321	G	T	3180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.935;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=12.512;MLEAC=1;MLEAF=0.500;MQ=61.12;MQRankSum=3.382;QD=23.05;ReadPosRankSum=3.611;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:56,82:0.59:138
chr4	129043617	rs3733322	T	G	3210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=12.221;MLEAC=1;MLEAF=0.500;MQ=61.08;MQRankSum=3.395;QD=22.61;ReadPosRankSum=3.623;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:58,84:0.59:142
chr4	129043809	rs12509092	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr4	129100643	rs12645577	G	A	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.711;QD=5.63;ReadPosRankSum=0.672;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:178,92:0.34:270
chr4	129127807	.	T	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.906;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr4	129776983	rs76983300	C	CT	937.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr4	129867280	rs10028124	T	A	5578.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	129873433	rs10857134	A	G	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	129873636	rs72683673	A	G	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr4	129924977	rs3113487	C	A	5400.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,213:1.00:214
chr4	129961179	rs3113489	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.05;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	130023759	rs1757935	A	T	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	130030652	rs337277	A	G	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr4	130030783	rs114250643	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr4	133367588	rs1827132	T	C	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	133367655	rs1827133	G	A	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	133368361	rs70948202	T	TC	869.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	134074058	rs3749589	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr4	134076285	rs2271172	C	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	134085208	rs4461537	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:68,27:0.28:95
chr4	138449510	rs58884168	T	A	60.80	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	138449683	rs10018837	A	G	13324.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=0.000;QD=25.43;ReadPosRankSum=-1.272;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:4,520:0.99:524
chr4	138449812	rs10006580	C	G	6461.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	138453453	rs28566714	G	A	3388.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:64,161:0.72:225
chr4	139100372	rs4479754	C	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	139103366	rs10016559	A	G	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	139135799	rs11944083	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=1.590;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr4	139140388	rs10025342	G	A	10518.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr4	139140494	rs6838248	G	C	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=0.328;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:169,83:0.33:252
chr4	139153317	rs6823642	T	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	139937071	rs3749515	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=-0.194;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr4	140005294	rs4863628	A	G	30295.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.985;ClippingRankSum=0.000;DB;DP=1179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=-0.164;QD=25.87;ReadPosRankSum=-0.150;SOR=0.445;set=HC	GT:AD:AF:DP	1/1:3,1168:1.00:1171
chr4	140039107	rs60424237	C	CA	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=1.348;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr4	140188094	rs3208941	C	T	7197.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:195,343:0.64:538
chr4	140216412	rs6816703	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr4	140263849	rs11944434	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	140270875	rs2044810	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.75;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	140308984	rs998310	C	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr4	140375296	rs13128486	C	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr4	140417471	rs4863655	G	T	2248.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.955;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=-0.681;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:1,86:0.99:87
chr4	140417671	rs4863656	G	C	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	140450204	rs35062373	G	A	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.246;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:138,63:0.31:201
chr4	140625323	rs925424	A	G	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	140640527	rs61743025	G	A	5200.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:127,246:0.66:373
chr4	140651584	rs5862430	TCTGCTG	TCTG,T	13689.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=398;set=Intersection	GT:AF:DP	1/1:0.99:313
chr4	140809656	rs6839194	C	A	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:119,52:0.30:171
chr4	140809710	rs3775241	C	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:145,60:0.29:205
chr4	140810334	rs3733381	T	C	6608.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr4	140810637	rs11100342	C	T	10490.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:2,398:0.99:400
chr4	140810700	rs11729794	C	T	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:228,135:0.37:363
chr4	140811063	.	TTGCTGCTGCTGC	T	3000	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=28;NF=6;NR=92;PP=3000;QD=20;SC=TTGAGTGCTGTTGCTGCTGCT;SbPval=0.74;Source=Platypus;TC=155;TCF=12;TCR=143;TR=98;WE=140811104;WS=140811053;set=Platypus	GT:AD:AF:DP	1/1:57,98:0.63:155
chr4	140811083	rs373804063	GC	G	14609.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.07;MQRankSum=2.629;QD=36.07;ReadPosRankSum=0.554;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:22,383:0.95:405
chr4	140811085	rs58287721	TGCTGCTGCTGC	T	13602.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.01;MQRankSum=3.111;QD=33.50;ReadPosRankSum=1.675;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:46,360:0.89:406
chr4	140811096	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=1;HapScore=1;MGOF=18;MMLQ=27;NF=97;NR=102;PP=2965;QD=20;SC=GCTGCTGCTGCTGCTGCTGCT;SbPval=0.51;Source=Platypus;TC=241;TCF=115;TCR=126;TR=199;WE=140811104;WS=140811053;set=Platypus	GT:AD:AF:DP	1/1:42,199:0.83:241
chr4	140811135	rs3733382	T	C	19404.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr4	141054219	rs116599841	G	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-1.529;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr4	141290574	rs2668577	C	T	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	141290676	rs113510871	T	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr4	141311960	rs358329	T	C	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	141313500	rs34492995	G	A	2876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=-0.886;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:72,138:0.66:210
chr4	141372485	rs6536966	T	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	141383034	rs10644682	T	TAC	1529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=2.016;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:30,78:0.72:108
chr4	141392832	rs143503833	T	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr4	141403562	rs111869533	T	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=0.523;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr4	141458485	rs882930	T	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	141590135	rs61742550	C	T	4056.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:128,198:0.61:326
chr4	141592206	rs4956473	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.60;ReadPosRankSum=-0.414;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	141600320	rs4956329	A	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-2.071;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:97,28:0.22:125
chr4	141607679	rs13112073	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr4	141677006	rs70943501	A	AG	3308.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	141771715	rs374724826	GGT	G	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.000;QD=8.59;ReadPosRankSum=1.704;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:35,29:0.45:64
chr4	141868736	rs2321687	G	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr4	141869062	rs6857782	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr4	141870648	rs4956494	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr4	141924720	rs200083054	TACACACACAC	T,TACACAC,TAC	627.73	.	AC=1,0,0;AF=0.500,0.00,0.00;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	0/1:0.83:18
chr4	141927365	rs138771695	CATATATATACACATATATATGTGTATGTAT	C	1029.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr4	141940074	rs4245936	T	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	141940187	rs10527652	AATATATATATATATATAT	A,AAT	417.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=17;set=Intersection	GT:AF:DP	1/1:1.00:10
chr4	141940234	rs4245937	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	142150860	rs7684664	T	G	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=2.640;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:198,84:0.30:282
chr4	142150894	rs62327566	T	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:121,65:0.35:186
chr4	142153856	.	C	CT	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.435;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr4	142155214	rs3822128	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr4	142640462	rs1493013	CC	TT	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;JOINED;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr4	142640538	rs2254514	T	C	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.103;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:138,60:0.30:198
chr4	142640637	rs2857261	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr4	142651159	rs12510030	T	C	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:193,78:0.29:271
chr4	142651265	rs17007610	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=1.900;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:80,32:0.29:112
chr4	143003155	rs11446749	G	GA	1851.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	143007169	rs2292392	C	A	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	143007197	rs336325	C	T	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	143029391	rs17383664	A	G	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	143033778	rs3822141	T	C	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:51,119:0.70:170
chr4	143043340	rs2270658	A	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:116,66:0.36:182
chr4	143043404	rs13133767	C	T	2530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.346;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:87,127:0.59:214
chr4	143044427	rs2270657	T	C	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.710;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:146,61:0.29:207
chr4	143044666	rs2645786	A	C	216.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	143045599	rs978752	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr4	143045632	.	G	A	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=6.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=-2.478;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:18,40:0.69:58
chr4	143067054	rs35390852	G	A	4852.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:120,229:0.66:349
chr4	143129980	rs139680025	A	AT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.476;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr4	143130034	rs1907123	A	T	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	143158979	rs28647625	A	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	143181747	rs66750380	AT	A	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.198;QD=5.50;ReadPosRankSum=0.868;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:41,30:0.42:71
chr4	143226496	rs17015882	A	C	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr4	143235865	rs3756122	C	G	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr4	143268702	rs1908968	A	G	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	143324036	rs1982965	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	143326312	rs150473961	A	AAGAGAG	1572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.10;ReadPosRankSum=-1.206;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:11,38:0.78:49
chr4	144124492	rs4234886	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.44;ReadPosRankSum=0.584;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr4	144125549	.	C	CT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.83;ReadPosRankSum=2.691;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:92,24:0.21:116
chr4	144135718	rs4285045	G	A	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-2.759;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:211,70:0.25:281
chr4	144264722	rs300919	T	C	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:175,79:0.31:254
chr4	144317039	rs2048408	C	T	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=1.533;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr4	144442611	rs11100790	T	C	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-2.204;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:205,84:0.29:289
chr4	144442735	rs11541117	C	T	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-0.156;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:200,91:0.31:291
chr4	144445789	rs6857360	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.42;ReadPosRankSum=-0.819;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	144446519	rs2292362	C	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr4	144447630	rs7694156	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr4	144456124	rs6818251	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	144459637	rs4690724	T	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	144466050	rs7692376	A	G	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,52:0.66:79
chr4	144466100	rs11289994	CT	C	153.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-1.614;SOR=0.197;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr4	144467104	rs13139128	T	C	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	144469383	rs2088415	A	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.259;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr4	144471378	.	C	CTT	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.208;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:30,31:0.51:61
chr4	144471402	rs1979776	T	G	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr4	144507270	rs111849944	G	GT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.571;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr4	144618610	rs1034494	G	C	5128.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr4	144794616	rs66570349	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-0.785;QD=1.05;ReadPosRankSum=-0.166;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:104,22:0.17:126
chr4	144797848	rs6537203	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-2.741;QD=1.76;ReadPosRankSum=0.979;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr4	144799840	rs3775246	G	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.489;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=1.983;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr4	144801503	rs368319263	TA	T	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.085;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=12.591;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-9.605;QD=2.88;ReadPosRankSum=-2.336;SOR=2.410;set=HC	GT:AD:AF:DP	0/1:112,18:0.14:130
chr4	144801510	rs199587133	G	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=10.930;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-8.884;QD=5.29;ReadPosRankSum=-2.120;SOR=1.758;set=HC	GT:AD:AF:DP	0/1:152,27:0.15:179
chr4	144801522	rs200725864	C	T	1620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=4.011;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-7.958;QD=5.96;ReadPosRankSum=-5.895;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:199,73:0.27:272
chr4	144801662	rs1132785	C	G	11591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-7.210;QD=19.65;ReadPosRankSum=0.532;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:226,364:0.62:590
chr4	144801671	rs146400730	A	C	3483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-5.702;QD=5.75;ReadPosRankSum=1.283;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:398,208:0.34:606
chr4	144801728	rs201075956	CA	TG	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;JOINED;set=Intersection	GT:AD:AF:DP	0/1:85,69:0.45:154
chr4	144802964	rs6824687	T	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr4	144803130	rs6819885	A	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=4.026;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-5.578;QD=0.68;ReadPosRankSum=-1.319;SOR=1.408;set=HC	GT:AD:AF:DP	0/1:95,15:0.14:110
chr4	144809800	rs143390057	C	A	2283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.58;MQRankSum=-4.277;QD=5.60;ReadPosRankSum=-0.484;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:268,140:0.34:408
chr4	144811428	rs4095436	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	144824194	rs138724961	T	C	7959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.656;ClippingRankSum=0.000;DB;DP=1003;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=49.36;MQRankSum=-29.862;QD=7.94;ReadPosRankSum=2.544;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:566,436:0.44:1002
chr4	144824269	rs1899967	C	T	20742.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.59;QD=34.40;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,603:1.00:603
chr4	144824273	rs6818201	C	T	5158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=49.58;MQRankSum=20.256;QD=10.61;ReadPosRankSum=2.573;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:230,256:0.53:486
chr4	144824308	rs202179013	TG	CC	2348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.853;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=4.932;JOINED;MLEAC=1;MLEAF=0.500;MQ=51.90;MQRankSum=-10.797;QD=13.12;ReadPosRankSum=-1.960;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:113,66:0.37:179
chr4	144824346	rs4091835	T	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.500;MQ=53.26;MQRankSum=-4.073;QD=0.97;ReadPosRankSum=-1.454;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:42,7:0.14:49
chr4	144917514	rs1980037	A	C	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	144918712	rs1132783	C	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr4	144918867	rs1473055	A	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=2.265;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:87,37:0.30:124
chr4	144918893	rs4835126	A	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=0.717;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:51,29:0.36:80
chr4	144918900	rs1849110	G	A	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	144920480	rs7661933	A	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:18,61:0.77:79
chr4	144920596	rs7683365	G	A	1817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.630;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-2.147;QD=14.78;ReadPosRankSum=-0.502;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:37,86:0.70:123
chr4	144920638	rs7662277	A	T	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.271;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-2.793;QD=15.42;ReadPosRankSum=0.240;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:24,63:0.72:87
chr4	144921607	rs1849119	C	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	144938033	rs5862681	A	AT	442.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.16;QD=34.06;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	144938081	rs28373876	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.58;QD=25.46;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	144938120	rs4561879	TG	CC	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=41.92;QD=44.78;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	145020647	rs13135548	C	T	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr4	145020658	rs13110331	A	G	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr4	145038318	rs62334650	C	T	158.96	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr4	145039801	rs145195209	AT	A	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.512;QD=3.40;ReadPosRankSum=0.453;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:88,21:0.19:109
chr4	145040784	rs62334651	T	C	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-1.076;QD=14.22;ReadPosRankSum=-0.234;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:42,88:0.68:130
chr4	145040962	rs6857144	CA	GT	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	145040999	rs62334652	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr4	145041011	rs70953778	AC	A	200.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	145041686	rs4867	A	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.08;QD=25.75;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	145041707	rs7658293	CT	AC	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=47.31;QD=42.20;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	145041720	rs7682260	A	G	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.02;QD=29.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	145041741	rs4449373	T	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.99;QD=36.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	145041750	rs45468202	A	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.95;MQRankSum=-0.911;QD=14.56;ReadPosRankSum=0.643;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr4	145050350	.	T	C	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-0.170;QD=6.84;ReadPosRankSum=-1.684;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:95,59:0.38:154
chr4	145573954	rs3215015	GA	G	503.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr4	146046138	rs4835203	T	C	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.42;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	146048583	rs1378314	T	G	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	146059567	rs143080279	G	A	3067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.419;QD=15.26;ReadPosRankSum=-0.733;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:61,140:0.70:201
chr4	146064660	rs145377154	G	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-2.676;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr4	146065006	rs9991890	C	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	146436286	rs377610507	CTG	C,CTGTGTG	179.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/2:0.57,0.43:7
chr4	146463966	rs1497126	T	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=2.034;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr4	146475243	rs10715854	CT	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.515;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr4	146572140	rs11721510	G	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr4	146572227	rs11721553	G	A	2683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.688;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:75,131:0.64:206
chr4	146601680	rs7683750	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr4	146601701	rs7682360	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr4	146617907	rs11733094	G	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr4	146650449	.	A	AT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.131;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr4	146653620	rs10008599	G	A	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-1.222;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr4	146697205	rs4835257	A	C	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.82;ReadPosRankSum=0.729;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:12,46:0.79:58
chr4	146700781	rs9308196	A	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr4	146770400	rs28497499	T	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	146806762	rs200880217	CAGAGAGAGAGAGAG	CAG,C	905.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=42;set=Intersection	GT:AF:DP	0/1:0.76:38
chr4	147104263	rs919483	A	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	147110652	rs17757715	C	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	147110891	rs7745	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	147177822	rs28406249	A	G	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:40,61:0.60:101
chr4	147177865	rs58191358	A	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr4	147177868	rs34063596	T	TC	866.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr4	147214029	rs12711434	C	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr4	147436414	rs140126518	C	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr4	147560457	.	T	TGGC	4092.73	.	AC=1;AF=0.500;AN=2;DP=239;set=Intersection	GT:AD:AF:DP	0/1:19,169:0.90:188
chr4	147560692	rs1504360	T	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.754;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	147628705	rs199560439	TA	T	532.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;MQ=60.19;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr4	148560357	rs2654935	C	T	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	148589677	rs2718454	C	T	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr4	148591769	rs2036502	G	T	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	148778685	rs11410393	G	GT	423.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	148787669	rs4240341	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	148796464	rs7663294	C	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	148800299	rs13147854	A	G	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	148827697	rs35780665	T	TA	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:13,67:0.84:80
chr4	148827747	rs12509618	A	C	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	148827973	rs11099672	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	148831070	rs4627844	A	G	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	148985720	rs3775327	T	C	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	149002016	rs10708334	AT	A	1565.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	149035449	rs1879829	T	C	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	149116035	rs4835500	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.251;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr4	149356516	rs5525	A	G	7486.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr4	149357475	rs5522	C	T	10063.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:1,392:1.00:393
chr4	149358014	rs2070951	G	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:38,50:0.57:88
chr4	151120062	rs35851047	A	AC	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-1.714;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr4	151120242	rs10015813	C	T	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:99,180:0.65:279
chr4	151141791	rs80038066	A	G	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.96;ReadPosRankSum=-0.611;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:16,37:0.70:53
chr4	151160753	.	CA	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.420;QD=2.23;ReadPosRankSum=0.438;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr4	151161490	rs6838238	T	C	5740.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	151161502	rs6813035	G	T	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	151174249	rs145393005	GTCCTCCTCA	G	1084.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr4	151177340	rs13152819	C	T	7297.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	151177340	.	CC	TG	1199	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=26;MQ=60.0;NF=26;NR=42;PP=1199;QD=18.4186452186;SC=CACCCCCCACCCTCCTCCCGC;SbPval=0.6;Source=Platypus;TC=73;TCF=29;TCR=44;TR=68;WE=151177349;WS=151177321;set=Platypus	GT:AD:AF:DP	1/1:5,68:0.93:73
chr4	151177341	rs13152820	C	G	7297.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	151177428	rs13101461	C	G	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.415;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr4	151177432	rs13101258	A	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	151199080	rs2290846	G	A	5403.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:112,257:0.70:369
chr4	151207127	rs3749574	C	T	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:84,185:0.69:269
chr4	151231371	rs1813134	T	C	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	151246937	rs143931917	G	T	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr4	151408800	rs7674989	T	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	151505322	rs13105060	T	A	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	151511715	rs4401437	T	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	151656589	rs1993109	C	T	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	151765243	rs186080	G	A	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	151770174	.	TTA	T	29	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=26;MQ=60.0;NF=0;NR=3;PP=29;QD=14.0;SC=AGTTTGACATTTATATATATA;SbPval=1.0;Source=Platypus;TC=19;TCF=1;TCR=18;TR=3;WE=151770183;WS=151770164;set=Platypus	GT:AD:AF:DP	0/1:16,3:0.16:19
chr4	151829659	rs1201207	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	152024326	rs4696658	T	G	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	152048936	rs11099782	A	T	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	152053408	rs7664483	G	A	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	152069406	rs150487703	TACACACACACACACACAC	TAC,T	1009.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=30;set=Intersection	GT:AF:DP	1/1:1.00:25
chr4	152070633	rs3792611	T	A	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	152086595	.	G	T	207.77	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr4	152201053	rs36097019	G	A	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr4	152201204	rs1875308	A	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	152212486	rs13126069	C	T	7603.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr4	152212603	rs2407221	T	G	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	152212704	rs13102005	T	A	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	152583907	rs11378262	C	CT	742.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.775;QD=9.40;ReadPosRankSum=-1.428;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:22,57:0.72:79
chr4	153267968	rs2714803	A	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	153268227	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.202;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr4	153561955	rs67746656	G	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:44,64:0.59:108
chr4	153565422	rs71620220	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr4	153565641	rs12650966	A	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.787;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr4	153565645	rs62320820	A	G	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr4	153574119	rs76494567	A	G	43.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=-0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	153690842	rs4696354	T	C	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:176,97:0.36:273
chr4	153750918	rs10010297	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.938;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:59,25:0.30:84
chr4	153793489	rs35670437	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.31;ReadPosRankSum=0.728;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr4	153870276	.	T	TAAGAAG	1198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=10.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=1.910;SOR=2.109;set=HC	GT:AD:AF:DP	0/1:37,44:0.54:81
chr4	153870355	rs12651510	T	C	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.623;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=4.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-2.005;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:181,46:0.20:227
chr4	153881835	rs3811834	C	T	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=2.403;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:143,43:0.23:186
chr4	153884092	.	G	GGT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.962;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr4	153896358	rs3811833	C	T	12112.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr4	153897770	rs3811832	G	A	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr4	154091111	rs34284701	C	T	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	154091282	rs147079859	GAGA	G	2601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.279;QD=27.98;ReadPosRankSum=1.099;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:26,67:0.72:93
chr4	154178549	rs72727901	G	A	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:14,59:0.81:73
chr4	154178697	rs12643843	A	G	4885.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:104,228:0.69:332
chr4	154387557	.	G	T	158.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr4	154387597	rs71620317	G	C	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.638;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:33,48:0.59:81
chr4	154478000	rs10639508	T	TAAATC	202.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	154478222	rs10001845	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr4	154479430	rs6848033	T	C	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:88,113:0.56:201
chr4	154512437	rs17279148	A	G	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=-0.464;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:13,45:0.78:58
chr4	154513531	rs1371158	A	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr4	154513627	rs7669418	A	G	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:63,103:0.62:166
chr4	154513722	rs7669741	C	T	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:119,194:0.62:313
chr4	154513856	rs893628	G	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr4	154514847	rs13109887	T	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr4	154514918	rs17279217	T	C	2231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=2.589;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:57,104:0.65:161
chr4	154514965	rs17370297	T	C	4414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.089;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-1.981;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:89,211:0.70:300
chr4	154517294	rs7690932	G	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr4	154519658	rs13118469	A	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.47;ReadPosRankSum=-0.653;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr4	154519666	rs13118949	G	C	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.12;ReadPosRankSum=-0.645;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr4	154519679	rs13145743	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr4	154542161	rs3761657	C	A	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	154542814	rs7663417	G	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=26.09;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	154544267	rs2289319	G	A	461.79	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr4	154555505	rs181769972	A	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.299;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:91,40:0.31:131
chr4	154557383	rs142471814	ATG	A	2935.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	154557405	rs3214684	CT	C	1687.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.18;ReadPosRankSum=0.070;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:2,86:0.98:88
chr4	154625951	rs5743704	C	A	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:73,136:0.65:209
chr4	154631543	rs2405432	A	T	8106.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr4	154631563	rs1339	T	C	8025.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr4	154641489	rs1439166	T	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	154644454	rs1456384	T	C	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	154709856	rs6535952	A	C	6930.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr4	155156207	rs7655799	G	A	9374.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr4	155161666	rs6535989	C	T	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	155180652	rs147630053	CCA	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-2.094;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr4	155190927	rs11412936	T	TA	41.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	155225784	rs70947158	AAAACAAAC	A,CAAACAAAC	688.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	1/2:0.28,0.72:25
chr4	155226421	rs12507663	C	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	155241438	rs11935503	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr4	155241572	rs11935573	G	A	4836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.131;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:89,226:0.72:315
chr4	155243573	rs13109747	C	T	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr4	155243604	rs1352714	T	C	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	155244401	rs140019361	TTTTG	T	1944.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	155244475	rs12500437	G	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	155244486	rs145036588	C	CA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=1.874;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	155249362	rs12651681	A	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=1.284;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr4	155252934	rs4696548	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr4	155256177	rs6858157	A	G	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,209:0.99:211
chr4	155256205	rs6858712	G	A	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	155305491	rs34927139	C	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr4	155407407	rs4346631	A	T	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	155407569	rs12501998	T	C	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=1.041;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	155407680	rs13151559	A	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	155410407	rs9999285	C	G	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.237;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chr4	155410650	rs72731014	T	C	8924.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:103,228:0.69:331
chr4	155410667	rs55810732	G	A	8838.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:97,225:0.70:322
chr4	155410731	rs72731016	G	C	3768.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:66,171:0.72:237
chr4	155410822	rs4696593	G	A	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:210,96:0.31:306
chr4	155411065	rs7656522	T	C	19941.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.62;ReadPosRankSum=-0.979;SOR=0.415;set=HC	GT:AD:AF:DP	1/1:1,748:1.00:749
chr4	155411104	rs6536016	A	C	27709.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;ClippingRankSum=0.000;DB;DP=1072;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=1.640;SOR=0.361;set=HC	GT:AD:AF:DP	1/1:1,1063:1.00:1064
chr4	155411649	rs13130030	G	A	8140.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:218,388:0.64:606
chr4	155411939	rs17373874	A	C	4641.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:120,218:0.64:338
chr4	155412464	rs13149269	C	T	2772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=1.467;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:64,130:0.67:194
chr4	155458728	rs7668014	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr4	155459194	rs7668818	A	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr4	155460097	rs62330409	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr4	155461113	rs7671792	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:114,42:0.27:156
chr4	155461687	rs62330410	A	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr4	155462148	rs7700005	A	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr4	155465535	rs62330413	A	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,38:0.34:112
chr4	155466869	rs62330417	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr4	155466935	rs11935584	T	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:107,48:0.31:155
chr4	155467187	rs11940724	A	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.934;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr4	155469959	rs11451354	G	GA	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.535;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=5.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.331;SOR=1.372;set=HC	GT:AD:AF:DP	0/1:97,36:0.27:133
chr4	155470838	rs148333595	G	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-1.035;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:178,61:0.26:239
chr4	155486381	rs2227401	C	T	4905.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:105,240:0.70:345
chr4	155486470	rs2227402	T	A	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:59,109:0.65:168
chr4	155488821	rs6056	C	T	2662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=0.500;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:79,129:0.62:208
chr4	155489085	rs2227411	A	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr4	155490649	rs140114081	TTTTG	T	1191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.804;QD=24.32;ReadPosRankSum=1.102;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr4	155490832	rs4681	C	T	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:116,182:0.61:298
chr4	155491759	rs4220	G	A	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:84,125:0.60:209
chr4	155505241	rs148317511	A	AGAAGACAGAGTGCTCCCATTCCCACTTC	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.56;ReadPosRankSum=-0.172;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr4	155507590	rs6050	T	C	13562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=986;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.036;QD=13.98;ReadPosRankSum=0.625;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:339,631:0.65:970
chr4	155508627	rs2070018	G	A	9756.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr4	155510224	rs7656433	A	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	155511897	rs2070011	T	C	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.620;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:80,29:0.27:109
chr4	155525276	rs2066865	G	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	155525970	rs1049636	G	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-1.523;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr4	155719189	rs79167802	T	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:71,24:0.25:95
chr4	155719919	rs33918255	AT	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.160;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr4	155720274	rs156502	T	C	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=1.094;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:149,70:0.32:219
chr4	155720349	rs12651031	C	A	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-2.035;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:239,86:0.26:325
chr4	155741382	rs60737037	T	C	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.140;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr4	155747891	rs35387165	CT	C	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.790;QD=1.65;ReadPosRankSum=0.455;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:154,82:0.35:236
chr4	156135676	rs1047214	C	T	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:121,159:0.57:280
chr4	156136027	rs2880415	C	T	4880.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:104,227:0.69:331
chr4	156273768	rs2305050	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr4	156276289	rs2341894	C	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr4	156276317	rs2880181	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr4	156276433	rs2341893	C	T	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	156276742	rs34426198	ACT	A	99.74	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	156276788	rs6857158	G	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr4	156276841	rs6834126	T	C	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.591;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:33,52:0.61:85
chr4	156283302	rs6829123	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.43;ReadPosRankSum=-0.349;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr4	156289900	rs3733390	C	T	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:133,186:0.58:319
chr4	156289917	rs3733391	G	A	3216.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:121,162:0.57:283
chr4	156296821	rs1037028	T	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr4	156632391	rs11944673	A	G	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	156634600	rs143472664	T	C	1546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.757;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:229,101:0.31:330
chr4	156643176	rs2306555	T	A	2271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.039;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:200,127:0.39:327
chr4	156706412	rs17033527	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr4	156706482	rs1459853	G	A	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	156757789	rs113590442	G	GA	78.84	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	156757818	rs1399046	A	C	380.18	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr4	156758138	.	TACTCTGAAACAA	T	413	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=27;MQ=61.53;NF=0;NR=2;PP=413;QD=237.887080448;SC=AAATGGTGTTTACTCTGAAAC;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=156758157;WS=156758128;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr4	156763611	rs72956406	T	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	156773267	rs59881089	T	C	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=0.834;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:61,41:0.40:102
chr4	156784584	rs77591504	A	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=1.527;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr4	156784970	rs932081	C	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	156787214	rs1399044	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	156787340	rs6848883	G	A	2234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-0.402;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:40,108:0.73:148
chr4	156826166	rs2137778	C	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	156826413	rs80246692	C	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.816;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr4	156832841	rs12502494	C	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	156839462	rs2292537	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr4	156847230	rs1543108	A	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr4	156847237	rs10714400	AG	A	928.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr4	156874833	rs2292538	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=0.596;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr4	157555832	rs1055400	G	A	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	157557726	rs11943855	A	G	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr4	157684248	rs3815861	T	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.850;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:76,34:0.31:110
chr4	157700394	rs17035231	A	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:90,55:0.38:145
chr4	158005876	rs7667450	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.216;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr4	158041591	rs11932115	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr4	158041896	rs3775724	G	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr4	158043559	rs41280501	C	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-1.751;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr4	158065038	rs12507409	T	C	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	158238607	rs41279337	C	T	83.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=-0.210;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr4	158238830	rs4302506	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr4	158242540	rs4475186	G	A	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	159076679	rs6830475	C	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr4	159076826	rs6830702	C	T	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr4	159514454	rs36045439	GA	G	502.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr4	159514466	rs11938976	C	G	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.370;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr4	159528464	rs67344334	C	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr4	159528479	.	GT	G	30	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=9;HapScore=2;MGOF=5;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=30;QD=11.75;SC=TTATTTTTATGTTTTTTTTCT;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=4;WE=159528487;WS=159528469;set=Platypus	GT:AD:AF:DP	1/0:13,4:0.24:17
chr4	159529091	rs11393653	A	AT	224.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr4	159538140	rs11321888	CA	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=2.053;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr4	159568383	rs13111939	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	159601676	rs11559290	C	T	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr4	159620035	rs7679753	A	C	56.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.20;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	159640565	rs7666472	G	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	159690622	rs55960593	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr4	159690640	rs59971723	C	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr4	159780252	rs148251675	T	C	1691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=0.757;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:194,103:0.35:297
chr4	159836336	rs78052401	G	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:179,101:0.36:280
chr4	159858736	rs11737459	T	A	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-1.076;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:127,64:0.34:191
chr4	159881479	rs9784569	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr4	159894250	rs619128	C	T	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	159894305	rs662473	T	C	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr4	160050073	.	GGT	G	37	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=5;HapScore=4;MGOF=8;MMLQ=27;MQ=57.42;NF=0;NR=2;PP=37;QD=20.5;SC=ACATATGGGGGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=160050082;WS=160050058;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr4	160107918	rs10014197	T	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr4	160114277	rs6834634	G	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr4	160162315	rs11944449	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.012;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr4	160225430	rs13103075	T	A	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-1.076;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:42,32:0.43:74
chr4	160251417	.	ATG	A	91	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=2;MGOF=22;MMLQ=27;MQ=59.01;NF=2;NR=0;PP=91;QD=47.0;SC=GTATATGTATATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=9;TCF=5;TCR=4;TR=2;WE=160251426;WS=160251407;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr4	160260209	rs13127789	G	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-1.392;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:88,45:0.34:133
chr4	160271268	rs11320537	GT	G	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.827;QD=2.61;ReadPosRankSum=1.274;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr4	160274180	rs10034898	G	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=-1.036;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr4	160277276	rs1135004	C	T	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:103,71:0.41:174
chr4	162421109	rs57337277	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,38:0.84:45
chr4	162459299	rs4691769	T	C	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	162463660	rs60655417	G	GA	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-3.326;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:17,40:0.70:57
chr4	162680450	rs73860714	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.497;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	162697014	rs34423160	T	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.948;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr4	162841814	rs5863499	T	TA	1816.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:3,86:0.97:89
chr4	162954926	rs60202022	A	G	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr4	163032383	rs376842709	T	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,28:0.31:89
chr4	164048199	rs4691895	G	C	3266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.835;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.960;QD=14.02;ReadPosRankSum=-0.447;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:74,159:0.68:233
chr4	164069397	rs11722876	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	164085425	rs4691896	T	C	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr4	164087954	rs936562	A	T	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr4	164246439	.	T	TA	684.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr4	164393117	rs11735477	T	A	10457.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr4	164466970	rs11726828	C	T	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	164477252	rs33943246	A	AT	2004.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	164507104	rs7435076	G	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	164533316	rs907431	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	165118066	rs35028495	G	T	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,47:0.62:76
chr4	165119006	rs35492692	A	AAT	1058.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,27:0.84:32
chr4	165878492	rs138873080	C	G	6696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=0.275;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:133,316:0.70:449
chr4	165891247	rs201936482	A	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=46.68;MQRankSum=-2.419;QD=11.31;ReadPosRankSum=0.119;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr4	166150086	rs72699582	A	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-7.807;QD=2.14;ReadPosRankSum=-3.003;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:84,21:0.20:105
chr4	166259161	rs12501541	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr4	166307262	rs11100610	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	166307302	rs12509669	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr4	166795334	.	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.955;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr4	166924727	rs143316816	A	G	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:267,133:0.33:400
chr4	166960481	rs41280515	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr4	167012241	rs377180243	GTTT	G,GTT	1980.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	1/1:1.00:44
chr4	167012250	.	T	TAA	2198.73	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	167012381	rs2654492	G	A	7202.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr4	167012480	rs2646914	T	C	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	167012506	rs2254420	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	167012543	rs2654493	T	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	167656073	rs1057377	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	167932327	rs2558141	T	C	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	168155178	rs11557043	A	G	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:303,105:0.26:408
chr4	169048968	.	CTT	C	565	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=20;HapScore=2;MGOF=66;MMLQ=21;MQ=55.62;NF=0;NR=5;PP=565;QD=113.6;SC=ATGTTGAAACCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=13;TCF=1;TCR=12;TR=5;WE=169048977;WS=169048958;set=Platypus	GT:AD:AF:DP	1/0:8,5:0.38:13
chr4	169049106	rs10002305	T	C	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr4	169083694	rs6836994	A	C	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:44,61:0.58:105
chr4	169086441	rs4405979	A	G	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=1.544;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:51,85:0.62:136
chr4	169086540	rs33925175	CAA	C	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.600;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr4	169102692	rs28721475	T	C	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	169138291	rs17611096	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr4	169183789	rs6552581	A	G	562.79	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr4	169188780	rs576619	T	C	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=1.827;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,42:0.68:62
chr4	169188927	rs575601	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr4	169189151	rs72693142	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr4	169190129	rs33910888	CA	C	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-0.201;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:20,41:0.67:61
chr4	169194984	rs147891941	T	TA	474.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr4	169197297	rs550625	C	T	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr4	169201616	.	T	C	4187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=2.900;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:105,191:0.65:296
chr4	169206769	rs823282	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr4	169208334	rs72693161	C	T	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr4	169209583	rs9995999	G	T	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr4	169213139	rs11723321	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr4	169227787	rs114673603	T	C	5007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=0.845;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:150,240:0.62:390
chr4	169227913	rs77642839	C	T	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:32,55:0.63:87
chr4	169279170	rs497151	A	G	71.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.37;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	169279517	rs115559281	C	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	169282112	rs2684346	C	T	62.82	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	169282232	rs2684347	G	A	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.66;ReadPosRankSum=-0.243;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chr4	169282355	rs2684348	T	C	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-0.441;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr4	169292759	rs6829368	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr4	169296472	rs34524049	TAACC	T	1276.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr4	169299676	rs10517990	T	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-1.750;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr4	169300451	rs11734310	G	C	1491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=0.118;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:63,76:0.55:139
chr4	169301044	rs3749497	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.82;ReadPosRankSum=-0.000;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr4	169301059	rs1489232	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.13;ReadPosRankSum=0.431;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	169301077	rs3749498	G	T	54.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.70;ReadPosRankSum=0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	169312801	rs6840397	A	G	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.629;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:44,100:0.69:144
chr4	169315571	rs11337868	TA	T	1171.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	169315760	rs3749499	C	A	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr4	169315867	rs17612144	A	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr4	169322163	rs78252588	CTA	C	2541.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:38,67:0.64:105
chr4	169325124	rs62334117	G	A	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.074;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr4	169325282	rs201061430	TA	T	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-2.498;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr4	169327191	rs3762856	C	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-2.337;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr4	169327905	rs62334119	G	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr4	169336662	rs4692661	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	169340431	rs2018241	A	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr4	169340639	rs1021318	C	A	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.399;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr4	169341435	rs2130145	A	G	5965.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr4	169341608	rs141226900	TACACATACACACACACACAC	T	290.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.301;MLEAC=1;MLEAF=0.500;MQ=61.00;MQRankSum=3.185;QD=8.08;ReadPosRankSum=1.862;SOR=1.680;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr4	169341614	.	TACACACACAC	T	297.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr4	169343044	rs61740705	A	G	2748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.142;QD=12.38;ReadPosRankSum=0.741;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:88,134:0.60:222
chr4	169343075	rs372227265	G	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:78,51:0.40:129
chr4	169345005	rs62334147	T	C	70.84	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	169348476	rs74346802	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr4	169362557	rs13151700	C	G	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.247;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:200,62:0.24:262
chr4	169369820	rs2712113	T	A	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	169369853	rs2712114	A	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	169369920	rs12507582	C	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.960;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:56,25:0.31:81
chr4	169374487	rs2634953	A	G	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	169382822	rs5863935	A	AC	122.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr4	169382991	rs17612630	C	A	3343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.488;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:89,159:0.64:248
chr4	169391990	rs78162593	T	TA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.946;QD=0.79;ReadPosRankSum=-0.479;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:124,28:0.18:152
chr4	169392148	rs6838031	G	A	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:39,104:0.73:143
chr4	169393179	rs12505232	T	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	169393595	rs13149639	A	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	169393972	rs113626526	G	GA	3165.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	169432673	rs61051061	C	T	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	169432841	rs1806729	G	A	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	169433326	rs7655494	TG	CA	10244.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	169433333	rs7673220	C	T	10436.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	169433444	rs72695199	C	T	11719.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:1,457:1.00:458
chr4	169589214	rs2723705	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr4	169799448	rs62333013	A	G	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	169812313	rs6827082	T	C	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	169835048	rs1532651	C	G	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	169846255	rs3733656	T	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr4	169846359	rs66895777	GCT	G	1799.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	169847646	rs35375934	TA	T	167.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.603;QD=14.00;ReadPosRankSum=-1.505;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr4	169923363	.	CAAAAA	C	1239.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.55;ReadPosRankSum=-0.152;SOR=0.412;set=HC	GT:AD:AF:DP	1/1:4,41:0.91:45
chr4	169923385	.	AAAAG	A	986	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=23;HapScore=2;MGOF=44;MMLQ=23;MQ=58.72;NF=0;NR=49;PP=986;QD=20.1836734694;SC=AAAAAAAAAAAAAAGCGTATT;SbPval=1.0;Source=Platypus;TC=64;TCF=0;TCR=64;TR=49;WE=169923396;WS=169923375;set=Platypus	GT:AD:AF:DP	0/1:15,49:0.77:64
chr4	169928842	rs2877380	G	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	169931268	rs28371817	G	A	10539.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.16;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	169931274	rs2279038	G	A	9929.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	169931288	rs2279039	T	C	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.44;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	169931326	rs67305871	CA	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.967;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-1.249;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr4	170017860	rs1471172	G	A	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	170398454	rs34099167	T	C	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	170398717	rs67794467	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	170428086	rs11335571	GA	G	240.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	170428331	rs6855803	G	T	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.07;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	170428334	.	G	GTT	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.098;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr4	170428352	rs11335570	G	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	170428843	rs17054977	C	A	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	170429241	rs66858776	T	A	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	170429359	rs66509122	C	T	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	170501850	rs7665092	A	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	170501954	rs7670271	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	170508586	rs9993493	T	C	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	170581570	rs4692739	G	A	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	170584880	rs62333166	G	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	170601449	rs3756284	T	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	170616918	rs2062609	G	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	170623928	rs142304223	CA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=1.640;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr4	170623946	rs11932759	A	G	1529.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.240;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.32;ReadPosRankSum=-1.641;SOR=0.343;set=HC	GT:AD:AF:DP	1/1:1,55:0.98:56
chr4	170623982	rs11946332	C	G	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	170628524	rs9996636	A	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	170634390	rs1058868	C	T	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	170638891	rs113528256	ACT	A	2770.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	170640993	rs28704165	T	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	170658731	rs17055114	A	G	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	170658944	.	C	CA	412.73	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr4	170663321	rs6849004	C	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	170678993	rs11540095	T	C	5536.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:127,261:0.67:388
chr4	170987636	rs1480544	A	G	3364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-1.973;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:94,159:0.63:253
chr4	170989708	rs3214945	C	CA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.88;ReadPosRankSum=-1.072;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	170991811	rs149355054	AGGTT	A	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.98;ReadPosRankSum=-0.884;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr4	170994554	rs5864015	GT	G	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.360;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:43,34:0.44:77
chr4	170999860	rs2622068	G	A	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:5,32:0.86:37
chr4	172735897	rs3796654	C	G	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	172973421	rs1505494	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	172973423	rs10572855	CAG	C	165.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr4	172973580	rs1505495	C	A	1995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-0.433;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:77,102:0.57:179
chr4	173232679	rs2136033	A	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	173232805	rs9312524	G	A	3439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=1.503;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:125,165:0.57:290
chr4	173232944	rs168011	G	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.495;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:110,55:0.33:165
chr4	173269638	rs333399	T	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:97,39:0.29:136
chr4	173269915	rs333398	C	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	173803914	rs6810619	T	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.698;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:99,36:0.27:135
chr4	173873170	rs11322401	TG	T	994.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.16;ReadPosRankSum=0.924;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:2,45:0.96:47
chr4	173930479	rs4696042	A	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	174310777	rs4695833	A	T	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	174458022	rs3775588	T	A	6167.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:146,291:0.67:437
chr4	174458142	rs3775587	C	G	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:51,115:0.69:166
chr4	174537063	rs4413383	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	175184391	.	T	C	58.77	.	AC=1;AF=0.500;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	175225452	rs4695918	G	A	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr4	175237208	rs4695922	C	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	175237408	rs1553669	T	C	5497.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	175414246	rs2612694	A	G	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	175429213	rs3846298	C	T	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	175429370	rs5864277	GT	G	6367.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:3,175:0.98:178
chr4	175565245	rs4235212	T	C	1854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=-3.558;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:50,88:0.64:138
chr4	175580119	rs6553802	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.82;ReadPosRankSum=-0.328;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	175580191	rs4365704	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr4	175598334	rs6812439	T	C	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	175649861	rs1872548	T	G	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.90;ReadPosRankSum=-1.886;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr4	175649873	rs3834804	GA	G	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=-1.676;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr4	175688138	rs7696263	A	G	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:86,168:0.66:254
chr4	176573028	rs72702639	T	C	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=1.643;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:119,54:0.31:173
chr4	176733450	rs62338073	G	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	176733452	rs113129787	G	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	177049854	rs28698547	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.402;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr4	177049880	rs28607147	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr4	177050057	rs78649239	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr4	177050062	rs71830098	CTATCAAATAAAA	C	147.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr4	177052925	rs7699831	G	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr4	177058580	rs9884643	A	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=-0.030;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	177063096	rs9995480	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.710;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr4	177073026	rs4690661	G	A	6538.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr4	177082032	rs10520338	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=0.656;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr4	177082069	rs7693453	G	C	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=1.178;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:67,42:0.39:109
chr4	177083166	rs2877924	A	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	177083333	rs12646277	A	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr4	177087322	rs4388031	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	177093505	rs4538426	T	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-1.166;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr4	177100644	rs11736872	G	A	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:151,86:0.36:237
chr4	177106009	rs28381989	TTCTC	T	7291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.551;QD=24.89;ReadPosRankSum=1.882;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:109,184:0.63:293
chr4	177113764	rs6857056	A	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr4	177113836	rs6832177	C	T	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:40,87:0.69:127
chr4	177116463	rs994252	C	G	3121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=-0.015;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:73,135:0.65:208
chr4	177116779	rs4565028	T	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr4	177142488	rs34466424	C	T	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:200,93:0.32:293
chr4	177142776	rs10032098	C	A	6053.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	177142777	rs13120838	A	C	6053.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=1.263;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	177142869	rs28415362	T	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr4	177143417	rs13147229	C	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	177143664	rs6553937	C	G	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	177146627	rs10013975	T	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	177245234	.	TTAG	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr4	177605081	rs5864401	CTCA	C	8844.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	177608775	rs4604006	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	177608875	rs4529000	A	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	177609203	rs13136065	G	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	177609259	rs2877962	C	T	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.55;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	177609264	rs2333495	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	177650614	rs3836595	T	TA	227.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	178167074	rs2118922	G	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr4	178167282	rs1347894	G	A	7553.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr4	178231152	rs10013040	C	A	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	178256759	rs3215157	CA	C	235.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	178256913	rs7689099	C	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	178257516	rs2271102	G	A	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	178261034	rs36204377	GTGTAAAA	G	1809.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;MQ=60.22;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	178272748	rs1054753	G	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.941;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=9.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.348;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr4	178274565	rs2048074	A	G	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr4	178274694	rs10007075	T	G	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:201,111:0.36:312
chr4	178274750	rs13112358	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:212,124:0.37:336
chr4	178274835	rs13112390	A	C	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	178281754	rs1876268	G	A	5115.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	178352679	rs1061814	T	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr4	178353046	rs3805167	G	C	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	178355668	rs4690521	C	G	6873.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	178359719	rs2271101	A	G	36.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.20;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	178359960	rs2228119	G	C	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	178361621	rs3792607	T	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.883;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr4	178363378	rs11131799	G	A	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:41,71:0.63:112
chr4	178881982	rs13109967	G	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr4	178882120	rs9994032	A	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.63;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	178887795	rs113648256	T	TTTTC	1958.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr4	178887811	rs35244240	C	CTTTT	762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.789;QD=8.47;ReadPosRankSum=1.322;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:65,25:0.28:90
chr4	178887815	rs28409849	C	T	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.900;QD=9.19;ReadPosRankSum=0.635;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:65,27:0.29:92
chr4	178911873	rs17065497	G	A	94.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	183090306	rs28555566	A	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=-0.021;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr4	183090436	rs28701836	A	G	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-0.120;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,54:0.66:82
chr4	183267728	rs33933747	TA	T	207.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.544;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=1.355;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr4	183268148	rs11373586	C	CG	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	183268174	rs6552554	C	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	183370056	rs11721730	C	T	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	183370244	rs35591339	AGCG	A	5645.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.11;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	183522021	rs141344153	C	CAT	589.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.06;ReadPosRankSum=-0.901;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr4	183522050	.	CT	C	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.518;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr4	183594117	rs3749508	A	T	142.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	183601590	rs34738241	A	AG	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=10.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=1.015;SOR=2.250;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr4	183601594	rs11934254	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr4	183601847	rs2871328	T	C	2580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=0.445;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:257,148:0.37:405
chr4	183650026	rs5864796	GA	G	178.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.693;QD=8.94;ReadPosRankSum=0.000;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr4	183652175	rs10866256	T	C	6144.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	183664522	rs7654255	T	C	2304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=2.123;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:340,149:0.30:489
chr4	183665437	rs6835335	C	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=1.583;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr4	183673226	rs5864797	T	TA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.86;ReadPosRankSum=1.437;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	183673247	rs2309770	T	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	183674577	rs13130747	G	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr4	183674597	rs71620945	A	C	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=0.195;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,48:0.68:71
chr4	183710332	rs61736044	G	A	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr4	183713630	rs6857162	A	G	15874.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.654;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=-0.748;SOR=0.296;set=HC	GT:AD:AF:DP	1/1:1,613:1.00:614
chr4	183721562	rs62336284	A	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=0.494;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr4	184114632	.	G	GT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=2.666;QD=1.32;ReadPosRankSum=-0.443;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr4	184170025	rs907357	G	A	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	184171187	rs10020261	T	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:155,74:0.32:229
chr4	184180920	rs11132172	G	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	184181012	rs17074537	G	A	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	184190355	rs11407064	A	AC	2575.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:34,73:0.68:107
chr4	184190535	rs6858486	G	A	2146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=2.477;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:61,102:0.63:163
chr4	184202148	rs11132174	G	T	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	184203706	rs2871353	A	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.803;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr4	184242959	rs6839940	C	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:44,85:0.66:129
chr4	184243528	rs7688467	G	A	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:56,69:0.55:125
chr4	184366629	rs11282266	T	TGCACA	316.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr4	184367558	rs147291711	TCTG	T	4604.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:94,119:0.56:213
chr4	184426387	rs8872	C	T	7240.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr4	184426526	rs6552675	A	G	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	184572341	rs56817841	GA	G	773.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=1.575;QD=14.07;ReadPosRankSum=1.558;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:20,35:0.64:55
chr4	184577177	rs6838230	T	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.803;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr4	184579914	rs9790628	G	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	184587658	rs5864850	G	GTACC	1845.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.97;ReadPosRankSum=0.714;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:36,48:0.57:84
chr4	184587701	rs9996255	G	A	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.359;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr4	184596446	rs7678174	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr4	184600571	rs62357990	C	A	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:76,162:0.68:238
chr4	184600601	rs4241779	A	G	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:63,140:0.69:203
chr4	184606653	rs11132206	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr4	184607970	rs9312316	T	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr4	184615948	rs36221086	TATAAAATAAGC	T	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=-0.988;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr4	184619017	rs12651215	C	G	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr4	184629794	rs9312318	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=0.027;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr4	184922669	rs3749534	G	A	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	184930289	rs35819790	G	GT	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.506;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=1.370;QD=6.67;ReadPosRankSum=-0.951;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:18,32:0.64:50
chr4	184932609	rs4862282	G	A	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	185012398	rs4479748	T	C	6359.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:185,296:0.62:481
chr4	185038274	rs4642291	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.529;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.771;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr4	185310218	rs1131553	C	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:122,61:0.33:183
chr4	185339517	rs2288246	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	185339641	rs17488241	T	C	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:83,152:0.65:235
chr4	185339894	rs4861623	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr4	185340725	.	G	GAA	1160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=10.75;ReadPosRankSum=0.087;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:58,50:0.46:108
chr4	185349978	rs114571855	A	G	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=2.396;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:87,30:0.26:117
chr4	185350307	rs807684	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-1.703;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr4	185550764	rs4647693	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.11;ReadPosRankSum=0.180;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr4	185559487	rs2705901	G	C	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-1.518;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:188,103:0.35:291
chr4	185578229	rs13108061	G	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.21;ReadPosRankSum=0.102;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr4	185583092	rs60624489	C	CTATT	4729.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	185587165	rs2463447	A	G	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	185599572	rs186382014	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	185622046	rs11728389	C	T	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	185652147	rs3806796	G	A	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	185652201	rs7675046	G	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	185652223	rs200616790	AAC	A	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.63;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	185681475	rs6825554	G	C	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	185683840	rs939040	A	G	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	185686032	rs2292898	C	T	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:88,172:0.66:260
chr4	185686856	rs3792314	C	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr4	185686948	.	AAC	A	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.911;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:385,52:0.12:437
chr4	185687233	rs3749233	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr4	185687687	rs12374289	A	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	185687863	rs11727009	A	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr4	185694697	rs7691972	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr4	185697966	rs41278587	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:62,26:0.30:88
chr4	185701549	rs1803898	G	T	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.175;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:177,74:0.29:251
chr4	185701620	rs7680850	T	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=0.224;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr4	185705006	rs2102862	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:48,64:0.57:112
chr4	185735054	rs7676928	G	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr4	185736113	rs2280297	G	C	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=0.874;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:200,113:0.36:313
chr4	185772384	rs1032299	A	G	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	185859505	rs6821859	T	G	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	185859682	rs10446837	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr4	185940461	rs4862491	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.30;ReadPosRankSum=0.130;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr4	185941964	rs6841359	G	A	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:71,171:0.71:242
chr4	186065844	rs34795113	C	CT	305.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr4	186097280	rs114119491	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr4	186111639	rs1133657	T	C	5074.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	186111961	.	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.386;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=183.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=2.189;SOR=9.289;set=HC	GT:AD:AF:DP	0/1:300,103:0.26:403
chr4	186112111	rs3108237	G	A	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	186112208	rs116632163	G	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.221;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr4	186112369	rs34825796	G	GA	926.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.06;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	186168387	rs3108252	T	G	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	186170358	rs3108229	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	186188373	rs57930723	TA	T	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.513;QD=2.65;ReadPosRankSum=-1.149;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr4	186208975	rs34265529	A	AG	43.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	186320666	rs11287696	TA	T	528.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	186321067	rs1053218	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	186321447	rs3733646	C	G	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	186323209	rs3733645	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	186323260	.	A	AT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.947;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr4	186323593	rs6552880	C	T	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	186324841	rs13126680	T	A	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	186336583	rs10032989	G	A	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	186339584	rs10003160	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	186347055	rs2289720	G	A	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr4	186347073	rs11132303	G	C	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	186347092	rs10866275	T	C	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	186357523	rs7697970	C	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	186361876	rs4476640	A	G	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	186366315	rs2120414	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	186370676	rs35349112	T	TA	717	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.595;QD=11.95;ReadPosRankSum=0.345;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:13,47:0.78:60
chr4	186378541	rs11722096	C	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:86,44:0.34:130
chr4	186379104	rs7664578	T	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=27.39;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	186379371	rs7687202	G	A	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	186379899	rs35596415	G	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	186380243	rs59319722	A	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	186380295	rs36007437	A	G	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	186380515	rs11132306	G	A	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	186380846	rs7698680	A	T	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	186381115	rs7699687	G	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	186381165	rs7699724	G	A	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	186382206	rs11132309	A	G	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=25.13;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	186391759	rs28715304	G	A	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr4	186391868	rs28581909	T	C	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:58,78:0.57:136
chr4	186391898	rs66481949	C	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr4	186392287	rs57923780	C	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr4	186392299	rs59315434	A	G	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.612;QD=30.94;ReadPosRankSum=2.050;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr4	186392299	.	AAC	GAA	1123	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=2;MGOF=39;MMLQ=24;MQ=60.11;NF=4;NR=11;PP=1123;QD=78.4311916575;SC=GGGCAGGGCTAACGGCTGGGG;SbPval=0.46;Source=Platypus;TC=22;TCF=5;TCR=17;TR=15;WE=186392309;WS=186392277;set=Platypus	GT:AD:AF:DP	1/0:7,15:0.68:22
chr4	186392301	rs56757447	C	A	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.612;QD=30.56;ReadPosRankSum=2.089;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr4	186423637	rs4635850	G	A	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	186423677	rs10866276	G	A	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	186427841	rs2306705	T	C	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr4	186444698	rs4862543	A	C	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=66.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr4	186444704	rs4861669	C	T	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	186456617	rs4862545	A	G	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	186508723	rs3186	G	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr4	186510778	rs1160906	A	AAACTC	1596.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr4	186528433	rs13144963	T	C	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:62,99:0.61:161
chr4	186568566	rs60210360	C	CT	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.787;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.049;QD=6.10;ReadPosRankSum=-0.339;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr4	186572791	rs4862557	C	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	186605868	rs10003873	C	G	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr4	186611644	rs147853881	A	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr4	186611819	rs79427853	A	G	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr4	186997643	rs1568358	C	G	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.98;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	187004074	rs3775291	C	T	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:142,99:0.41:241
chr4	187005376	rs6830345	T	C	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	187070919	.	C	T	313.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr4	187072887	rs2276916	A	G	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr4	187072932	rs2276914	A	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	187073000	rs2276913	A	G	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.60;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr4	187073030	rs2276912	T	C	5337.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.66;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	187074833	rs4862650	A	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	187075474	rs6552958	G	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	187077206	rs4862653	A	G	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	187077393	rs7670550	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.730;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.104;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr4	187078785	rs2276924	A	G	7786.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr4	187078819	rs2276923	C	G	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:67,175:0.72:242
chr4	187078866	rs2276922	C	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.669;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:93,25:0.21:118
chr4	187078938	rs2276920	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.948;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr4	187079017	rs1877321	G	A	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr4	187079047	rs2276919	A	G	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=0.921;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:102,57:0.36:159
chr4	187088665	rs201993653	CAAA	C	186.75	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	187093018	rs4241814	G	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr4	187113041	rs1055138	C	G	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.790;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:84,57:0.40:141
chr4	187115632	rs10013653	C	A	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:55,80:0.59:135
chr4	187115841	rs7682918	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:23,70:0.75:93
chr4	187118040	rs112367913	TTC	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=0.431;QD=12.96;ReadPosRankSum=-1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr4	187118662	rs4862662	G	T	5012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=-1.471;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:110,239:0.68:349
chr4	187120211	rs13146272	C	A	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	187122204	rs11730880	C	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr4	187122304	rs3817184	C	T	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:36,82:0.69:118
chr4	187122319	rs3736455	T	G	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	187126550	rs3216724	TC	T	1220.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:118,56:0.32:174
chr4	187129995	rs2276917	A	G	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-1.090;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:99,57:0.37:156
chr4	187130198	rs2276918	A	G	4093.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:106,174:0.62:280
chr4	187149540	rs1912826	G	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr4	187153511	rs4253243	T	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-1.421;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr4	187158034	rs3733402	G	A	4886.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:112,233:0.68:345
chr4	187159282	rs4253256	G	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr4	187171355	rs4253299	A	G	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:77,137:0.64:214
chr4	187172280	rs2304595	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.12;ReadPosRankSum=-1.021;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	187172353	rs4253300	C	CT	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr4	187175722	rs2292423	T	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr4	187178599	rs4253326	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr4	187178613	rs4253327	A	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr4	187179135	rs4253331	T	C	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-1.545;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:48,23:0.32:71
chr4	187179210	rs925453	T	C	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:82,132:0.62:214
chr4	187455099	rs28383652	G	A	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=1.843;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:244,119:0.33:363
chr4	187511861	rs1973352	G	A	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-0.230;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr4	187516880	rs1298865	A	G	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-1.565;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:61,25:0.29:86
chr4	187518976	rs2306990	C	T	2194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.048;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:324,137:0.30:461
chr4	187518980	rs1280096	T	C	13651.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr4	187519206	rs1280097	C	G	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr4	187521037	rs10009030	C	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr4	187525020	rs2637777	A	C	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=4.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-0.877;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:154,60:0.28:214
chr4	187527472	rs2584344	A	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.189;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr4	187530313	rs4862722	C	T	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	187530578	.	G	GT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.796;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr4	187531022	rs28647489	A	G	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:249,136:0.35:385
chr4	187534363	rs2249916	G	A	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:214,107:0.33:321
chr4	187534542	rs2249926	T	A	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:176,111:0.39:287
chr4	187538133	rs1280100	A	G	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.468;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:73,52:0.42:125
chr4	187538942	rs1280098	T	G	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:154,74:0.32:228
chr4	187542755	rs28489116	T	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:181,101:0.36:282
chr4	187557893	rs328418	T	C	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=0.087;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:244,146:0.37:390
chr4	187561080	rs10001377	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.806;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr4	187584771	rs172903	C	G	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	187627659	rs200130748	TA	T	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.641;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:129,70:0.35:199
chr4	187627792	rs11939575	T	C	9792.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr4	187628398	rs1877731	C	G	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr4	187629140	rs367863	G	C	9570.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr4	187629497	rs458021	G	A	6957.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	187629538	rs3733413	C	T	6828.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr4	187629770	rs3733414	A	C	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr4	188924979	rs6815391	C	T	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=-0.044;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:24,49:0.67:73
chr4	189012728	rs2279550	G	C	2122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.298;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-0.962;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:199,115:0.37:314
chr4	189018486	rs17883789	A	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:76,25:0.25:101
chr4	189022420	rs4862860	A	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.746;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=1.153;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr4	189026524	rs13139393	C	G	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr4	189060610	rs11934889	G	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	189061106	rs13131525	G	A	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	189061223	rs13131409	C	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	189063361	rs70938702	CGTGTGTGT	CGT,C	959.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	1/1:1.00:24
chr4	189064952	rs28463290	C	G	7589.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr4	189065104	rs9784566	T	G	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	189065435	rs34012483	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	189065441	rs11940227	G	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	190329166	rs10622647	G	GCACACACA,GCACACA	2379.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=81;set=Intersection	GT:AF:DP	1/1:1.00:61
chr4	190394938	rs138612273	CAAGAAG	C	1770.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	190876177	rs80264746	G	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.521;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=57.926;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-16.063;QD=0.65;ReadPosRankSum=-4.634;SOR=5.160;set=HC	GT:AD:AF:DP	0/1:233,27:0.10:260
chr4	190876195	rs7684300	C	T	2491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.867;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=33.453;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=-18.266;QD=6.86;ReadPosRankSum=-8.890;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:268,95:0.26:363
chr4	190876204	rs3207892	G	A	3440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.241;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=15.401;MLEAC=1;MLEAF=0.500;MQ=54.67;MQRankSum=-18.890;QD=8.52;ReadPosRankSum=-7.432;SOR=1.673;set=HC	GT:AD:AF:DP	0/1:281,123:0.30:404
chr4	190876242	rs1061653	G	A	4672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.34;MQRankSum=-17.543;QD=10.99;ReadPosRankSum=5.275;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:221,204:0.48:425
chr4	190876256	rs140599307	C	T	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=9.130;MLEAC=1;MLEAF=0.500;MQ=52.29;MQRankSum=-4.887;QD=1.51;ReadPosRankSum=3.555;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:353,47:0.12:400
chr4	190876278	rs199978807	G	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=51.14;MQRankSum=-3.037;QD=1.20;ReadPosRankSum=3.258;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:314,33:0.10:347
chr4	190876293	rs201142987	C	A	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.342;MLEAC=1;MLEAF=0.500;MQ=49.92;MQRankSum=-2.082;QD=1.78;ReadPosRankSum=1.771;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:272,33:0.11:305
chr4	190876314	.	C	T	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=48.39;MQRankSum=-1.029;QD=2.89;ReadPosRankSum=-0.228;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:214,32:0.13:246
chr4	190876319	rs77450681	A	T	4173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=7.172;MLEAC=1;MLEAF=0.500;MQ=48.63;MQRankSum=-6.564;QD=18.31;ReadPosRankSum=0.464;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:73,155:0.68:228
chr4	190876349	rs199599460	C	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,53:0.57:93
chr4	190876351	.	G	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=5.124;MLEAC=1;MLEAF=0.500;MQ=50.36;MQRankSum=-2.753;QD=1.27;ReadPosRankSum=-0.007;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:78,11:0.12:89
chr4	190878538	rs34697501	A	AT	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.309;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=95.952;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=-11.359;QD=0.79;ReadPosRankSum=-8.693;SOR=7.046;set=HC	GT:AD:AF:DP	0/1:290,43:0.13:333
chr4	190878563	rs137858630	C	A	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.771;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=6.354;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-3.268;QD=1.17;ReadPosRankSum=-6.005;SOR=1.367;set=HC	GT:AD:AF:DP	0/1:505,91:0.15:596
chr4	190878569	.	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DP=671;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-3.404;QD=0.08;ReadPosRankSum=-4.399;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:624,47:0.07:671
chr4	190878571	.	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DP=682;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-3.204;QD=0.08;ReadPosRankSum=-3.948;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:634,48:0.07:682
chr4	190878596	.	G	A	1140.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DP=940;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQRankSum=-4.792;QD=1.21;ReadPosRankSum=-1.381;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:851,89:0.09:940
chr4	190878597	rs62345290	C	T	4654.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.256;ClippingRankSum=0.000;DB;DP=948;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=53.87;MQRankSum=-5.723;QD=4.97;ReadPosRankSum=0.509;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:635,301:0.32:936
chr4	190878599	.	A	G	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.183;ClippingRankSum=0.000;DP=980;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-4.688;QD=1.24;ReadPosRankSum=-0.854;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:887,93:0.09:980
chr4	190878608	.	G	A	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DP=1089;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.83;MQRankSum=-4.664;QD=1.06;ReadPosRankSum=0.461;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:982,105:0.10:1087
chr4	190878654	rs78653319	C	G	5161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.233;ClippingRankSum=0.000;DB;DP=1165;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=53.29;MQRankSum=-2.104;QD=4.43;ReadPosRankSum=3.320;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:813,351:0.30:1164
chr4	190878661	rs62345291	A	T	6047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.354;ClippingRankSum=0.000;DB;DP=1159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.32;MQRankSum=-5.729;QD=5.23;ReadPosRankSum=-0.666;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:772,385:0.33:1157
chr4	190878729	rs201450141	A	G	3091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.001;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=78.014;MLEAC=1;MLEAF=0.500;MQ=53.40;MQRankSum=-14.475;QD=13.10;ReadPosRankSum=-6.392;SOR=3.965;set=HC	GT:AD:AF:DP	0/1:147,89:0.38:236
chr4	190878731	rs201154783	GG	CA	3091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.472;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=98.733;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.46;MQRankSum=-14.278;QD=13.68;ReadPosRankSum=-5.411;SOR=5.188;set=HC	GT:AD:AF:DP	0/1:147,79:0.35:226
chr4	190878750	rs113800771	A	G	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.439;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=33.057;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=-7.839;QD=2.65;ReadPosRankSum=-0.658;SOR=4.892;set=HC	GT:AD:AF:DP	0/1:106,22:0.17:128
chr4	190882973	rs78181874	A	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-9.979;QD=1.73;ReadPosRankSum=6.147;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:83,19:0.19:102
chr4	190947451	rs140385360	C	T	7665.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.98;MQRankSum=3.546;QD=25.13;ReadPosRankSum=-1.269;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:4,301:0.99:305
chr5	154962	rs377259632	A	G	2346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.110;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:144,125:0.46:269
chr5	163205	rs3810870	G	C	28107.77	.	AC=2;AF=1.00;AN=2;DB;DP=1069;set=Intersection	GT:AD:AF:DP	1/1:0,1046:1.00:1046
chr5	163260	rs29674	A	C	37951.77	.	AC=2;AF=1.00;AN=2;DB;DP=890;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,873:1.00:873
chr5	163266	rs3810867	C	G	36951.77	.	AC=2;AF=1.00;AN=2;DB;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,829:1.00:829
chr5	163769	rs29675	G	A	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	169361	rs13159868	C	T	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	169763	rs1108868	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	171569	rs4956981	T	C	12145.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr5	171643	rs13171103	C	G	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	172971	rs6868964	G	A	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	173200	rs6885136	C	T	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	173258	rs6893369	A	G	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	174106	rs4956987	G	A	15336.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr5	174240	rs6875054	GC	AA	8152.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	174267	rs6862729	A	G	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	181660	rs7717970	T	G	10157.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:2,393:0.99:395
chr5	181730	rs12519352	C	G	9753.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr5	181762	rs11133847	A	G	6974.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr5	182077	rs4956924	T	A	34071.77	.	AC=2;AF=1.00;AN=2;DB;DP=1325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,1306:1.00:1306
chr5	195507	rs13167067	C	T	4624.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:254,234:0.48:488
chr5	205352	.	C	A	2435.77	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:66,116:0.64:182
chr5	218598	rs2303740	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.083;QD=6.63;ReadPosRankSum=1.463;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr5	225768	rs12520059	G	C	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:34,62:0.65:96
chr5	230980	rs2288461	A	G	25175.77	.	AC=2;AF=1.00;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	1/1:0,970:1.00:970
chr5	231111	rs1126417	T	C	7344.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:222,348:0.61:570
chr5	311478	rs2244029	T	C	16193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=1769;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.196;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:921,836:0.48:1757
chr5	314011	rs4957018	G	A	5710.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:267,285:0.52:552
chr5	344218	rs6887387	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:61,45:0.42:106
chr5	354051	rs2013782	T	C	4084.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:334,229:0.41:563
chr5	376618	.	G	GTGAGAACCGTGGGGTGAACGCGGGGAAACACAGGAAAGATGTGAATGAA	8942.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=59.22;ReadPosRankSum=-0.928;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:2,149:0.99:151
chr5	413428	rs3215229	AT	A	2330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.784;QD=7.33;ReadPosRankSum=-1.262;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:146,172:0.54:318
chr5	413591	rs11744075	G	A	11416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=1.686;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:347,302:0.47:649
chr5	413594	rs2261659	G	C	11424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.02;ReadPosRankSum=1.756;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:340,294:0.46:634
chr5	413639	rs2672731	G	C	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:175,144:0.45:319
chr5	421403	rs11741946	G	A	4232.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:191,212:0.53:403
chr5	421455	rs11741954	G	T	6066.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:322,313:0.49:635
chr5	421647	rs10068732	A	T	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr5	422752	rs10072668	T	C	2570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-1.759;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:118,124:0.51:242
chr5	422955	rs2292596	C	G	4347.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:324,229:0.41:553
chr5	423906	rs55932239	G	A	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:96,109:0.53:205
chr5	428166	rs143087196	GC	G	2998.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:107,116:0.52:223
chr5	433952	rs2672724	C	T	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr5	434722	rs34453673	G	C	8172.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:342,393:0.53:735
chr5	434981	rs2672725	G	C	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	435001	rs1058336	C	T	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:74,68:0.48:142
chr5	435021	rs1058337	T	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr5	435055	rs2672779	G	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr5	442571	rs56146525	A	C	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:54,84:0.61:138
chr5	443059	rs77101200	G	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:70,65:0.48:135
chr5	453567	rs2672722	G	A	6049.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:410,313:0.43:723
chr5	456915	rs2721010	A	G	5311.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:331,283:0.46:614
chr5	457955	rs2251843	A	G	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:149,121:0.45:270
chr5	462465	rs890972	C	A	4661.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:191,234:0.55:425
chr5	462556	rs2081942	G	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr5	465510	rs1035908	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	466075	rs10474780	G	C	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	466811	rs2434697	T	C	17435.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:1,651:1.00:652
chr5	472951	rs890974	T	C	3212.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:164,157:0.49:321
chr5	473368	rs34674918	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=1.801;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr5	474974	rs2721018	C	T	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-0.073;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:34,38:0.53:72
chr5	475104	rs2247114	A	G	10381.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr5	475337	rs200907923	TGGAAAGTTAGGGTCACCG	T	1950.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr5	475346	rs2247107	A	T	869.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,45:0.42:107
chr5	475621	rs55720119	T	TG	1363.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr5	475626	rs41282625	C	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr5	476353	rs2230437	C	T	11544.77	.	AC=1;AF=0.500;AN=2;DB;DP=1218;set=Intersection	GT:AD:AF:DP	0/1:620,559:0.47:1179
chr5	476530	rs2244240	C	G	8896.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr5	476848	rs890976	C	T	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:160,144:0.47:304
chr5	476910	rs890977	T	C	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	477303	rs890980	A	G	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:91,73:0.45:164
chr5	477634	rs4334924	G	A	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr5	477639	rs890981	G	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr5	478574	rs3832380	GGGGGCGCA	G	1047.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	478598	rs3734140	C	T	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	478655	rs3734141	G	A	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	479879	rs376525752	G	GC	2308.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	479905	rs890986	A	C	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	481610	rs6872510	T	C	8948.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr5	482151	rs11385633	G	GC	1046.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-0.569;QD=19.75;ReadPosRankSum=-0.435;SOR=3.570;set=HC	GT:AD:AF:DP	0/1:7,46:0.87:53
chr5	482186	rs9885312	C	G	8993.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=27.34;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr5	482653	rs3777230	T	C	7835.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.56;ReadPosRankSum=1.691;SOR=0.603;set=HC	GT:AD:AF:DP	1/1:1,294:1.00:295
chr5	488310	rs2303737	C	T	8367.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	491826	rs11746373	G	C	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:168,169:0.50:337
chr5	619022	rs1617985	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	619333	rs1709531	T	C	11070.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:1,435:1.00:436
chr5	639231	rs12522955	C	A	9148.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:324,442:0.58:766
chr5	640404	rs141837757	CCCTA	C	1391.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr5	640728	rs56325086	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:38,66:0.63:104
chr5	644552	rs4957080	G	T	4691.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:249,241:0.49:490
chr5	665148	rs72707016	A	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,60:0.50:119
chr5	665280	rs1697963	T	C	25547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=1535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.111;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:836,689:0.45:1525
chr5	665295	rs61731455	A	G	25970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=1612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-0.492;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:873,721:0.45:1594
chr5	666244	rs149807312	G	GGGGCACAGGCGACTTA	9959.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=926;ExcessHet=3.0103;FS=8.252;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.140;QD=16.60;ReadPosRankSum=1.149;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:340,260:0.43:600
chr5	666270	rs11750269	G	A	3968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-1.767;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:318,214:0.40:532
chr5	666323	rs1697964	A	G	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:135,71:0.34:206
chr5	678062	rs450628	A	G	9131.77	.	AC=1;AF=0.500;AN=2;DB;DP=1410;set=Intersection	GT:AD:AF:DP	0/1:857,529:0.38:1386
chr5	733767	rs55778145	T	C	6715.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:323,315:0.49:638
chr5	733998	rs4247710	G	A	4074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.893;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=3.603;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-4.807;QD=15.38;ReadPosRankSum=-1.064;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:149,116:0.44:265
chr5	734004	rs28498541	G	A	3720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=6.879;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-5.011;QD=15.83;ReadPosRankSum=-0.934;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:136,99:0.42:235
chr5	741736	rs61128505	G	T	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.500;MQ=47.74;MQRankSum=-4.150;QD=7.52;ReadPosRankSum=-2.015;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:59,43:0.42:102
chr5	748477	rs3817066	A	C	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.745;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=10.128;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-17.038;QD=2.31;ReadPosRankSum=-4.856;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:338,77:0.19:415
chr5	748482	rs3817065	G	C	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.555;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=12.344;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-17.105;QD=4.47;ReadPosRankSum=-2.140;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:335,71:0.17:406
chr5	756307	rs367198	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.64;MQRankSum=-2.653;QD=4.80;ReadPosRankSum=1.912;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr5	766910	rs1809933	C	T	8053.77	.	AC=1;AF=0.500;AN=2;DB;DP=931;set=Intersection	GT:AD:AF:DP	0/1:500,423:0.46:923
chr5	766939	rs4957103	G	A	8038.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:364,394:0.52:758
chr5	767033	rs1809932	A	C	6080.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:345,308:0.47:653
chr5	801304	rs201238003	A	G	4411.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:354,228:0.39:582
chr5	801362	rs3867415	A	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr5	834075	rs1260864	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.27;QD=27.23;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	843702	rs3863147	G	A	4722.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:309,136:0.31:445
chr5	843723	rs3863148	C	A	5225.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:388,171:0.31:559
chr5	843815	rs71591190	C	T	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.498;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=47.41;MQRankSum=-7.991;QD=6.36;ReadPosRankSum=0.188;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:208,112:0.35:320
chr5	870740	rs13153992	C	T	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:100,99:0.50:199
chr5	876179	rs184819406	G	C	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:138,176:0.56:314
chr5	878551	rs145107515	A	G	10133.77	.	AC=1;AF=0.500;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	0/1:414,454:0.52:868
chr5	893356	rs13181961	C	G	24532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=2069;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=1.404;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:852,1164:0.58:2016
chr5	893386	.	G	A	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.065;ClippingRankSum=0.000;DP=1153;ExcessHet=3.0103;FS=199.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=5.027;SOR=11.622;set=HC	GT:AD:AF:DP	0/1:730,333:0.31:1063
chr5	904374	rs12518024	T	G	6011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.514;QD=11.24;ReadPosRankSum=-0.376;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:249,286:0.53:535
chr5	904395	.	G	GT	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.391;QD=2.19;ReadPosRankSum=1.216;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:149,57:0.28:206
chr5	914835	.	CGT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=1.111;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:47,8:0.15:55
chr5	917351	rs139489763	A	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr5	981019	rs10065177	T	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.968;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr5	1009425	rs10060716	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	1035399	rs147352169	T	TAATG	17319.73	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:4,383:0.99:387
chr5	1035482	rs12657514	A	G	28890.77	.	AC=2;AF=1.00;AN=2;DB;DP=1112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,1106:1.00:1106
chr5	1036521	rs60180971	G	A	19628.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:0,769:1.00:769
chr5	1036616	rs367843383	CA	C	956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=62.34;MQRankSum=0.000;QD=19.93;ReadPosRankSum=1.097;SOR=1.743;set=HC	GT:AD:AF:DP	0/1:7,41:0.85:48
chr5	1038526	rs3889678	A	G	12171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=1755;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=1.079;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:1050,671:0.39:1721
chr5	1053341	rs2241602	A	G	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr5	1053396	rs2241603	C	G	17974.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:0,693:1.00:693
chr5	1057615	rs2241606	A	G	39366.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=1577;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.15;ReadPosRankSum=0.645;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:4,1561:1.00:1565
chr5	1057782	rs12108965	T	C	5385.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	1060379	rs35661060	G	A	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	1060400	rs4975568	G	A	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	1060634	rs4246750	C	T	18075.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr5	1060654	rs4246749	G	A	13103.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr5	1062900	rs13170649	C	G	16345.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr5	1063187	rs6863419	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	1063998	rs7722287	G	A	54945.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.767;ClippingRankSum=0.000;DB;DP=2147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=0.798;SOR=0.367;set=HC	GT:AD:AF:DP	1/1:1,2101:1.00:2102
chr5	1064240	rs137938985	G	A	21448.77	.	AC=1;AF=0.500;AN=2;DB;DP=1720;set=Intersection	GT:AD:AF:DP	0/1:676,1030:0.60:1706
chr5	1065276	.	A	AAGGGGACAGTG	2975	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=3;HapScore=1;MGOF=14;MMLQ=23;MQ=59.92;NF=66;NR=164;PP=2975;QD=20;SC=TGGGGACGAAAAGGGGACAGT;SbPval=0.57;Source=Platypus;TC=248;TCF=74;TCR=174;TR=230;WE=1065327;WS=1065266;set=Platypus	GT:AD:AF:DP	1/1:18,230:0.93:248
chr5	1065290	rs4362981	A	G	31433.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,702:1.00:702
chr5	1065297	rs62331176	C	T	33136.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.09;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,719:1.00:719
chr5	1065298	.	GAGGGGACACTGAGGAGACACAC	G	2974	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=24;MQ=60.04;NF=31;NR=166;PP=2974;QD=20;SC=AGAGGACAGCGAGGGGACACT;SbPval=0.56;Source=Platypus;TC=221;TCF=36;TCR=185;TR=197;WE=1065327;WS=1065266;set=Platypus	GT:AD:AF:DP	1/1:24,197:0.89:221
chr5	1065301	rs79273934	G	A	33451.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,733:1.00:733
chr5	1065306	.	ACT	A	34191.73	.	AC=2;AF=1.00;AN=2;DP=750;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.33;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,738:1.00:738
chr5	1065310	.	A	C	33909.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=1.205;set=HC	GT:AD:AF:DP	1/1:0,749:1.00:749
chr5	1065311	.	GGAGACACAC	G	33967.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=772;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.87;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,757:1.00:757
chr5	1065689	rs13186367	C	T	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	1073689	rs10780095	C	T	7429.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr5	1076245	rs11951420	G	A	6500.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:282,306:0.52:588
chr5	1076459	rs11952124	G	T	10104.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=0.074;SOR=0.587;set=HC	GT:AD:AF:DP	1/1:3,403:0.99:406
chr5	1076521	.	A	ATCCTGTGACCACCT	1166.73	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:73,34:0.32:107
chr5	1076524	.	T	TCCA	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.590;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=17.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-1.164;SOR=3.238;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr5	1076526	.	C	CCTGTGACCA,CATCCTGTGACCA	546.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=85;set=Intersection	GT:AF:DP	0/1:0.19:85
chr5	1076706	rs74673540	C	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr5	1078898	rs4975564	A	G	20320.77	.	AC=2;AF=1.00;AN=2;DB;DP=806;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,769:1.00:769
chr5	1081668	rs13176210	G	A	8883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.231;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:317,430:0.58:747
chr5	1081702	rs6865765	A	G	15550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DB;DP=1282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.053;QD=12.20;ReadPosRankSum=-2.580;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:525,750:0.59:1275
chr5	1081767	rs4526148	C	T	9670.77	.	AC=1;AF=0.500;AN=2;DB;DP=1319;set=Intersection	GT:AD:AF:DP	0/1:773,537:0.41:1310
chr5	1081855	rs148022833	G	A	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:226,151:0.40:377
chr5	1085604	rs11133624	C	A	7117.77	.	AC=1;AF=0.500;AN=2;DB;DP=925;set=Intersection	GT:AD:AF:DP	0/1:536,362:0.40:898
chr5	1093609	rs56276350	G	GGGGCGGGGACT	3936.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.179;QD=27.53;ReadPosRankSum=1.126;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:2,141:0.99:143
chr5	1093860	rs6883411	CC	GT	4093.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;JOINED;set=Intersection	GT:AD:AF:DP	0/1:130,109:0.46:239
chr5	1094389	rs4975552	T	A	13676.77	.	AC=1;AF=0.500;AN=2;DB;DP=1158;set=Intersection	GT:AD:AF:DP	0/1:472,678:0.59:1150
chr5	1116066	rs6554618	C	T	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-0.063;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:42,62:0.60:104
chr5	1209063	rs72709422	A	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr5	1212647	rs13180809	C	T	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr5	1213510	rs77928413	C	T	9382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.055;ClippingRankSum=0.000;DB;DP=1241;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=0.405;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:687,527:0.43:1214
chr5	1214005	rs138649942	CCCT	C	1970.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:112,57:0.34:169
chr5	1214264	rs6554663	A	G	3120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-0.219;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:297,174:0.37:471
chr5	1216775	rs4975629	A	G	44413.77	.	AC=2;AF=1.00;AN=2;DB;DP=1730;set=Intersection	GT:AD:AF:DP	1/1:2,1706:1.00:1708
chr5	1219859	rs11746371	C	T	3960.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:108,168:0.61:276
chr5	1219874	rs6869718	G	A	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	1221199	rs12513763	T	C	13446.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr5	1225564	rs7728646	T	C	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	1225613	rs7704058	G	A	12884.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	1225626	rs7728667	T	A	14658.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr5	1225687	rs7705355	CT	TC	39395.77	.	AC=2;AF=1.00;AN=2;DB;DP=863;JOINED;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr5	1225703	rs7724858	A	G	40218.77	.	AC=2;AF=1.00;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	1/1:0,929:1.00:929
chr5	1225801	rs7704363	G	A	4883.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:161,237:0.60:398
chr5	1232240	rs7379178	C	T	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	1232491	rs4975623	G	C	10911.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr5	1232775	rs6858999	T	A	6047.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	1240757	rs7447815	C	G	16406.77	.	AC=1;AF=0.500;AN=2;DB;DP=1449;set=Intersection	GT:AD:AF:DP	0/1:634,799:0.56:1433
chr5	1240848	rs6554684	A	C	7196.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	1243009	rs7721679	A	G	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	1244286	rs7448994	T	C	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr5	1244425	rs4073918	C	T	23773.77	.	AC=2;AF=1.00;AN=2;DB;DP=906;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,900:1.00:900
chr5	1271524	rs11133719	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	1280128	rs7734992	T	C	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr5	1320722	rs402710	C	T	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:59,115:0.66:174
chr5	1321873	rs10073340	C	T	13188.77	.	AC=1;AF=0.500;AN=2;DB;DP=1207;set=Intersection	GT:AD:AF:DP	0/1:543,646:0.54:1189
chr5	1325767	rs466502	A	G	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	1325803	rs465498	A	G	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr5	1330253	rs452932	T	C	12202.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr5	1335385	rs3030832	CTG	C	6507.73	.	AC=1;AF=0.500;AN=2;DB;DP=549;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:284,193:0.40:477
chr5	1344458	rs31490	G	A	37372.77	.	AC=2;AF=1.00;AN=2;DB;DP=1464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,1451:1.00:1451
chr5	1409127	rs429699	T	C	11900.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr5	1416142	rs40358	C	A	31660.77	.	AC=2;AF=1.00;AN=2;DB;DP=1231;set=Intersection	GT:AD:AF:DP	1/1:0,1213:1.00:1213
chr5	1420588	rs11564758	C	G	6107.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:214,276:0.56:490
chr5	1442974	rs2254408	C	A	15850.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.23;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr5	1442974	.	CCCTAC	ACCTAC,ACCTAT	1861	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=10;MMLQ=25;MQ=59.94;NF=144,63;NR=106,46;PP=1861,1430;QD=7.58308485019;SC=CCCCGGCTGCCCCTACGACCC;SbPval=0.56;Source=Platypus;TC=251;TCF=144;TCR=107;TR=250,109;WE=1442987;WS=1442964;set=Platypus	GT:AF:DP	0/1:1.00:251
chr5	1442979	rs2270914	C	T	3914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=0.480;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:295,210:0.42:505
chr5	1464028	rs6876662	C	T	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:106,95:0.47:201
chr5	1466813	rs2277007	T	C	10845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=1211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.620;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:654,539:0.45:1193
chr5	1470900	rs2277005	G	A	28287.77	.	AC=2;AF=1.00;AN=2;DB;DP=1113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,1091:1.00:1091
chr5	1471109	rs27054	T	C	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	1479678	rs27059	G	C	6662.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	1481135	rs139885091	CAGGGCCTGCACCA	C	4447.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:139,117:0.46:256
chr5	1481148	rs2447846	A	C	2380.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:117,116:0.50:233
chr5	1490019	rs72717531	C	G	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:165,140:0.46:305
chr5	1494764	rs3733797	C	T	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:200,167:0.46:367
chr5	1594664	rs4246747	C	G	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	1708872	rs62338366	C	T	22324.77	.	AC=2;AF=1.00;AN=2;DB;DP=877;set=Intersection	GT:AD:AF:DP	1/1:3,856:1.00:859
chr5	1708983	rs12523324	G	A	17337.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr5	1799172	rs6890404	A	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr5	1801426	rs13176353	G	C	11870.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	1801427	rs34372448	C	CG	11811.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	1801432	rs11745573	A	G	12693.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr5	1801689	rs2242412	A	C	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	1814369	rs3752844	C	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr5	1814395	rs36074605	TTGTA	T	7304.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	1814783	rs4147773	T	C	13217.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr5	1878021	rs2279588	G	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	1880865	rs4975753	T	C	7386.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:374,376:0.50:750
chr5	1881916	rs2307118	A	C	10066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=1130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.846;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:566,518:0.48:1084
chr5	1882129	rs2232374	T	G	4397.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:174,201:0.54:375
chr5	1882280	rs2232373	C	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-1.803;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr5	1882579	rs4975757	G	A	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=-0.265;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr5	1882900	rs6876836	C	T	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	2749057	rs76906087	C	A	17035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=1936;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=2.724;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:1030,892:0.46:1922
chr5	2755031	rs62333234	A	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr5	2755485	rs62333235	C	T	7462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.064;ClippingRankSum=0.000;DB;DP=761;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.289;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:352,399:0.53:751
chr5	3508888	.	CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	C	763.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=31.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.29;ReadPosRankSum=-1.349;SOR=5.781;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr5	3600334	rs844154	T	C	38261.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=1517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=2.196;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:2,1490:1.00:1492
chr5	3610658	rs1373997	T	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr5	4087485	rs6869319	G	T	1345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.525;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:74,71:0.49:145
chr5	4095647	.	C	CCTTTCCTTTTCTTTT	2475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=17.43;ReadPosRankSum=-1.225;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:49,93:0.65:142
chr5	4420188	rs140931368	G	GTGTA	4124.73	.	AC=1;AF=0.500;AN=2;DB;DP=603;MQ=60.73;set=Intersection	GT:AD:AF:DP	0/1:327,160:0.33:487
chr5	4420474	rs2436584	A	G	1800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=1.443;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:198,104:0.34:302
chr5	4702311	rs72088426	CTG	C	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.942;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr5	4702341	.	GT	G	697.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.395;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr5	4702343	.	GTGTGTGTGT	G	688.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.292;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=-0.404;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr5	4702461	rs4315900	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr5	4830593	rs816473	T	C	2758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=5.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.020;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:150,142:0.49:292
chr5	4830690	rs816474	A	G	5561.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:487,315:0.39:802
chr5	4930051	rs27416	G	T	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr5	4930087	rs147939241	G	GTGAA	1998.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=1.868;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:93,70:0.43:163
chr5	4930144	rs35167763	AAG	A	7477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.38;ReadPosRankSum=3.512;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:174,193:0.53:367
chr5	4930181	rs560366	C	T	6720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.99;ReadPosRankSum=1.600;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:168,186:0.53:354
chr5	5140632	rs270208	T	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr5	5140958	rs270207	T	A	3581.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:136,103:0.43:239
chr5	5140970	rs270206	C	T	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:117,89:0.43:206
chr5	5141009	rs59628659	CT	C	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.504;QD=7.07;ReadPosRankSum=-0.358;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chr5	5146200	rs1863969	A	T	10165.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr5	5146223	rs1871468	G	C	6156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=0.821;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:245,303:0.55:548
chr5	5146335	rs2086310	C	G	11068.77	.	AC=1;AF=0.500;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	0/1:456,547:0.55:1003
chr5	5146395	rs1863968	A	G	16187.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr5	5182286	rs61748184	C	T	8845.77	.	AC=1;AF=0.500;AN=2;DB;DP=1485;set=Intersection	GT:AD:AF:DP	0/1:934,523:0.36:1457
chr5	5186416	rs62339905	T	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.785;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=1.969;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:138,31:0.18:169
chr5	5187776	rs1863972	G	A	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:168,112:0.40:280
chr5	5189950	rs6859975	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr5	5200220	rs58639468	A	ATCTC	6332.73	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:290,180:0.38:470
chr5	5200281	rs6555335	C	T	4388.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:404,250:0.38:654
chr5	5200490	rs17762877	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr5	5223073	rs12652968	A	G	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:200,97:0.33:297
chr5	5232346	rs2913623	G	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr5	5232356	rs150710468	AGG	A	2309.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:45,61:0.58:106
chr5	5232398	rs2913624	G	A	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:88,114:0.56:202
chr5	5232703	rs2195290	T	C	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr5	5234983	rs5865597	A	AG	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.431;QD=22.14;ReadPosRankSum=1.621;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr5	5235001	.	A	G	90	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=18;HapScore=2;MGOF=29;MMLQ=24;MQ=59.16;NF=3;NR=5;PP=90;QD=15.5964015684;SC=AAAAAAAAAAAGAATCCACTT;SbPval=0.33;Source=Platypus;TC=15;TCF=8;TCR=7;TR=8;WE=5235009;WS=5234991;set=Platypus	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	5235028	rs2913630	T	C	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr5	5235096	rs2913631	A	G	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.965;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:63,64:0.50:127
chr5	5239921	rs11742341	C	T	3284.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:209,169:0.45:378
chr5	5240002	rs11742370	C	A	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:173,148:0.46:321
chr5	5436609	rs2578552	G	A	1875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=1.093;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:174,108:0.38:282
chr5	5437380	rs2578550	C	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:86,46:0.35:132
chr5	5443179	rs2578554	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=1.030;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr5	5460569	rs2578565	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr5	5460619	rs2619844	G	C	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:63,80:0.56:143
chr5	5462148	rs2578500	G	A	5802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-0.611;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:205,272:0.57:477
chr5	6312879	rs2168655	C	G	293.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr5	6337065	rs70965988	T	TACACACACACACACACACACACACAC	596.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=85.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	6372585	rs9451	A	G	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=-0.151;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:69,46:0.40:115
chr5	6377293	rs17831958	C	T	3051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=-1.424;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:293,174:0.37:467
chr5	6378614	rs7723985	G	C	40954.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=1615;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=1.680;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:2,1586:1.00:1588
chr5	6600492	.	G	GT	182.73	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr5	6602544	rs2303711	T	C	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:180,114:0.39:294
chr5	6604205	rs2303709	A	G	5064.77	.	AC=1;AF=0.500;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	0/1:495,296:0.37:791
chr5	6604787	rs13181449	C	T	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:385,196:0.34:581
chr5	6604931	rs6889694	C	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:102,74:0.42:176
chr5	6604970	rs6888601	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr5	6605532	rs2303707	C	A	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-0.495;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:97,53:0.35:150
chr5	6607125	rs3217325	GAAC	G	1891.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.633;QD=9.14;ReadPosRankSum=0.809;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:150,57:0.28:207
chr5	6611757	rs10454287	A	T	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:112,58:0.34:170
chr5	6611983	rs3733776	C	A	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:159,93:0.37:252
chr5	6617011	rs6887702	C	A	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:250,131:0.34:381
chr5	6618186	rs10475338	T	C	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:115,73:0.39:188
chr5	6737571	rs2279657	A	G	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	6739039	rs573304	T	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	6742503	rs145949479	G	GA	804.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:69,45:0.39:114
chr5	6748518	rs274682	A	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	6748659	rs274681	T	C	27765.77	.	AC=2;AF=1.00;AN=2;DB;DP=1099;set=Intersection	GT:AD:AF:DP	1/1:2,1081:1.00:1083
chr5	6748810	rs2279653	G	A	6133.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	6754762	rs274676	T	C	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	7306615	rs11955700	A	G	2468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.375;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-16.080;QD=6.17;ReadPosRankSum=-1.085;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:255,145:0.36:400
chr5	7520881	rs13166360	G	T	6057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DB;DP=1368;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-0.206;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:959,402:0.30:1361
chr5	7654097	rs111644211	GAGA	G	1365.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:92,40:0.30:132
chr5	7690754	rs2914289	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr5	7695845	rs11134251	C	A	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:152,230:0.60:382
chr5	7696028	rs11134252	C	T	1696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=-2.321;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:20,77:0.79:97
chr5	7698282	rs60394679	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.513;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.070;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr5	7698551	rs4257743	C	T	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.480;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.138;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:139,43:0.24:182
chr5	7712810	rs6555488	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	7717396	rs6878196	T	C	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr5	7743787	rs62342477	C	T	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:326,137:0.30:463
chr5	7757705	rs4072341	T	C	5219.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.95;ReadPosRankSum=2.197;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:2,132:0.99:134
chr5	7757715	rs4479814	C	T	4239.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.155;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.40;ReadPosRankSum=0.900;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:2,98:0.98:100
chr5	7757776	rs79709987	C	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.646;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=16.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.51;ReadPosRankSum=-0.253;SOR=5.283;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr5	7757779	rs78321927	CA	TG	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.697;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=16.853;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.30;ReadPosRankSum=-0.253;SOR=5.283;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr5	7804577	rs73047092	C	T	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:54,142:0.72:196
chr5	7850898	rs36226128	TGCCCAGCCGCCCAGCCGCCCAGCC	T,TGCCCAGCCGCCCAGCC	1828.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;QD=39.76;SOR=0.976;set=HC	GT:AD:AF:DP	1/2:0,35,11:0.76,0.24:46
chr5	7851181	rs161874	C	A	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-0.200;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr5	7859523	rs1046012	A	G	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=1.481;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:31,53:0.63:84
chr5	7861470	rs162026	G	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	7862926	rs3733784	T	C	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr5	7866106	rs17184211	A	T	6106.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:142,289:0.67:431
chr5	7866967	rs162030	G	C	9135.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr5	7868030	rs2966952	T	C	14402.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr5	7869235	rs72716536	T	C	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-1.594;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:401,150:0.27:551
chr5	7869455	rs34828626	TC	T	932.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr5	7870083	rs326119	C	A	1412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.721;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:265,98:0.27:363
chr5	7870973	rs1801394	A	G	7317.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:115,342:0.75:457
chr5	7875307	rs2303079	C	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,19:0.24:79
chr5	7878179	rs1532268	C	T	6842.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:138,315:0.70:453
chr5	7878192	rs161870	T	C	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:340,139:0.29:479
chr5	7883188	rs162035	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:97,38:0.28:135
chr5	7885782	rs34487083	A	AT	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=4.304;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.502;QD=1.48;ReadPosRankSum=2.287;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:236,79:0.25:315
chr5	7885794	.	T	TTC	4016.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.888;QD=11.71;ReadPosRankSum=-1.168;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:119,224:0.65:343
chr5	7885959	rs162036	A	G	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:253,142:0.36:395
chr5	7886585	rs35035568	TG	T	990.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,41:0.76:54
chr5	7891610	rs2303081	A	G	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=0.614;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:103,73:0.41:176
chr5	7893080	rs16879356	T	C	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.788;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:75,48:0.39:123
chr5	7893121	rs162049	G	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	7897191	rs10380	C	T	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:211,103:0.33:314
chr5	7897283	rs12347	G	A	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:193,99:0.34:292
chr5	7897319	rs1802059	G	A	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:59,106:0.64:165
chr5	7899909	rs10520874	G	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=1.352;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr5	8461166	rs341899	T	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	9136487	rs6883525	A	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr5	9154659	rs1806151	G	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	9201973	rs40683	C	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	9280841	rs55821543	G	A	4620.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:134,222:0.62:356
chr5	9280957	rs6555597	C	A	5620.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	9380110	rs1805243	T	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr5	10227548	rs2136197	C	A	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr5	10227823	rs3080459	C	CCT	1219.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	10235490	rs2292264	G	A	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:46,94:0.67:140
chr5	10236856	rs11133605	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr5	10236927	rs2292263	C	T	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	10237036	rs12653481	A	G	6246.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:147,298:0.67:445
chr5	10237155	rs6876650	G	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:121,53:0.30:174
chr5	10239261	rs2438652	G	A	11004.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:236,522:0.69:758
chr5	10239278	rs2252505	C	T	26831.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:0,722:1.00:722
chr5	10250047	rs2607301	C	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;QD=23.55;SOR=4.066;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	10250430	rs2548546	G	A	14120.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr5	10250443	rs2578618	T	C	12459.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr5	10254817	rs2578617	A	G	14051.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr5	10255021	rs2607294	T	C	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	10255083	rs2578616	A	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	10256161	rs1042392	T	C	11132.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr5	10258125	rs2457156	G	A	4290.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	10261542	rs2607327	C	T	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	10261966	rs2244717	G	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	10262740	rs2578642	C	A	19176.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:1,747:1.00:748
chr5	10263451	.	TGGAG	T	2947	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=3;HapScore=1;MGOF=10;MMLQ=24;MQ=59.83;NF=3;NR=73;PP=2947;QD=20;SC=CGCCTCTGCGTGGAGGGGGGG;SbPval=0.5;Source=Platypus;TC=84;TCF=3;TCR=81;TR=76;WE=10263472;WS=10263441;set=Platypus	GT:AD:AF:DP	1/1:8,76:0.90:84
chr5	10263453	rs147103051	GA	G	9341.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=1.399;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	10263457	rs58620077	G	A	9392.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.50;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	10263461	rs370306096	GGGA	G	8565.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.81;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	10264962	rs544	A	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	10282396	rs10067744	A	G	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	10282479	rs10052785	C	T	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	10282519	rs10067826	A	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr5	10390340	rs11449510	G	GT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.19;ReadPosRankSum=-0.475;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr5	10394911	rs201911419	AT	A	31	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=7.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	10405809	.	G	GT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.761;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr5	10417575	rs2934222	C	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,57:0.68:84
chr5	10417589	rs2967956	G	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	10424022	rs1995214	C	T	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=0.648;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr5	10442496	rs2567577	T	C	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	10448247	rs1976360	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	10505467	rs62362463	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr5	10505585	rs17816571	A	G	5330.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:136,253:0.65:389
chr5	10505851	rs373652829	TAAA	T,TA	2327.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.15;MQRankSum=0.621;QD=28.04;ReadPosRankSum=2.231;SOR=0.886;set=HC	GT:AD:AF:DP	1/2:2,61,20:0.73,0.24:83
chr5	10506509	rs2915513	G	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.130;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=4.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.234;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:145,38:0.21:183
chr5	10506739	rs2936580	C	T	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:221,80:0.27:301
chr5	10509069	rs1392005	C	T	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr5	10564846	rs814576	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	10565027	rs1103749	C	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	10624866	rs10062687	T	G	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:347,164:0.32:511
chr5	10624887	rs1531839	T	C	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:240,125:0.34:365
chr5	10638180	rs11745612	T	C	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:219,81:0.27:300
chr5	10638364	rs6889196	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:95,32:0.25:127
chr5	10649784	rs113222960	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr5	10650150	rs56969869	A	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:178,65:0.27:243
chr5	10650251	rs140897444	CGGGGCT	C	1086.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.828;QD=6.59;ReadPosRankSum=0.117;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:129,36:0.22:165
chr5	10650324	rs13354827	T	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.398;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.493;QD=10.95;ReadPosRankSum=-0.485;SOR=1.927;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr5	10650324	.	TT	GG	294	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=17;MMLQ=23;MQ=60.39;NF=1;NR=7;PP=294;QD=43.4334843578;SC=ATCGCACCACTTCCGCTCCAT;SbPval=0.82;Source=Platypus;TC=20;TCF=4;TCR=16;TR=8;WE=10650333;WS=10650314;set=Platypus	GT:AD:AF:DP	1/0:12,8:0.40:20
chr5	10650325	rs13354828	T	G	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.398;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.493;QD=10.95;ReadPosRankSum=-0.485;SOR=1.927;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr5	10664999	rs111384023	C	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr5	10665259	rs11954194	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-2.143;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr5	10748231	rs267944	C	T	10601.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr5	10748462	rs267943	C	T	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	10761009	rs11740244	C	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	10761182	rs267927	A	G	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	10973727	rs1566622	G	A	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:119,70:0.37:189
chr5	10973927	rs1566624	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	10981720	rs58618024	G	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	10986684	rs12515637	G	C	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	10986722	rs36031475	A	AG	9191.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=69.34;QD=45.06;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	10986727	rs35210570	A	G	9200.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=69.51;QD=44.66;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	10986727	.	AA	GA	2198	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=1.0000,1.0000;HP=4;HapScore=1;MGOF=25;MMLQ=27;MQ=68.67;NF=18,53;NR=40,43;PP=2198,1695;QD=38.9973406978;SC=ATGTAAGGGGAAACAGTGAAT;SbPval=0.47;Source=Platypus;TC=61;TCF=18;TCR=43;TR=58,96;WE=10986735;WS=10986717;set=Platypus	GT:AD:AF:DP	0/1:1,96:0.99:97
chr5	10986727	.	AA	AGA	2198	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=1.0000,1.0000;HP=4;HapScore=1;MGOF=25;MMLQ=27;MQ=68.67;NF=18,53;NR=40,43;PP=2198,1695;QD=38.9973406978;SC=ATGTAAGGGGAAACAGTGAAT;SbPval=0.47;Source=Platypus;TC=61;TCF=18;TCR=43;TR=58,96;WE=10986735;WS=10986717;set=Platypus	GT:AD:AF:DP	0/1:3,58:0.95:61
chr5	10986772	rs9312749	G	A	5318.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	10986947	rs10434650	C	T	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	10988172	rs879353	T	C	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	11159657	rs1990003	T	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr5	11385201	.	CGCG	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.220;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr5	11412302	rs31750	C	T	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	11564995	rs7719578	A	G	16485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=1.180;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:237,404:0.63:641
chr5	11564999	rs116816126	C	T	16603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.67;ReadPosRankSum=0.816;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:247,426:0.63:673
chr5	13692279	rs2166337	A	T	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	13701327	rs3734112	A	G	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr5	13701525	rs3734111	T	C	11010.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:96,288:0.75:384
chr5	13701536	rs3734110	T	C	10276.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:88,254:0.74:342
chr5	13701617	rs61338089	GA	G	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.674;QD=5.16;ReadPosRankSum=-1.222;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr5	13701654	rs13162313	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr5	13717471	rs2277046	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.237;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:98,38:0.28:136
chr5	13721378	rs17203442	A	G	3379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.828;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:84,160:0.66:244
chr5	13729714	rs3777093	A	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	13735892	rs3734109	T	C	7160.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	13737444	rs17263496	G	A	7681.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:166,366:0.69:532
chr5	13737700	rs2401811	A	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	13769257	rs12655133	T	A	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:328,138:0.30:466
chr5	13770757	rs138234449	C	CA	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.427;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr5	13776487	rs34413787	C	T	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:215,87:0.29:302
chr5	13788886	rs10513155	C	A	3684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;ClippingRankSum=0.000;DB;DP=884;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=1.531;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:632,240:0.28:872
chr5	13810149	rs35732567	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	13810441	rs35058767	G	A	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=27.51;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	13810451	rs145443373	CAT	C	1400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.016;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.101;QD=17.08;ReadPosRankSum=-1.563;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:44,38:0.46:82
chr5	13810529	rs31238	C	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	13811775	rs10078391	T	C	6976.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:124,325:0.72:449
chr5	13814682	rs56046501	T	C	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:41,85:0.67:126
chr5	13815049	rs6890413	AG	CT	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr5	13817881	rs6889720	G	A	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	13820656	rs6554817	G	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:31,68:0.69:99
chr5	13823262	rs10035657	T	C	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	13829608	rs1348691	G	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	13829799	rs1348689	G	A	9992.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr5	13829933	rs16902790	G	A	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	13830048	rs10474996	G	A	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	13839695	rs9312849	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	13842027	rs35805633	CAA	C,CA	881.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.717;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=7.360;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.478;QD=12.08;ReadPosRankSum=2.457;SOR=0.525;set=HC	GT:AD:AF:DP	1/2:10,33,30:0.45,0.41:73
chr5	13842052	rs1910089	A	T	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	13845045	rs10041113	G	A	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	13845107	rs4429853	A	G	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	13845151	rs10041099	C	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	13850651	rs795528	T	C	175.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr5	13850739	rs4701988	T	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:75,41:0.35:116
chr5	13850750	rs6554820	A	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:49,86:0.64:135
chr5	13851016	rs795526	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr5	13859743	rs1502043	G	T	3837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=3.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=1.179;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:90,175:0.66:265
chr5	13859807	rs1867677	G	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	13862600	rs7724453	T	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr5	13862616	rs7704417	C	T	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr5	13864728	rs6554827	C	A	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:80,205:0.72:285
chr5	13864885	rs6554828	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr5	13865717	rs7720415	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr5	13865980	rs7703349	T	C	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr5	13866450	rs11748811	A	G	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr5	13867819	rs1445810	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr5	13868103	rs35398031	TA	T	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=1.319;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:13,37:0.74:50
chr5	13871925	rs10513159	A	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr5	13876664	rs1445804	T	C	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	13882958	rs13170062	C	T	3341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.469;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-1.112;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:502,204:0.29:706
chr5	13883262	rs10462710	C	G	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.436;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:97,25:0.20:122
chr5	13885023	rs147685082	GCA	G	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:41,10:0.20:51
chr5	13886244	rs150817911	CAA	C,CA	530.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.160;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.449;QD=13.97;ReadPosRankSum=0.078;SOR=0.249;set=HC	GT:AD:AF:DP	1/2:4,21,13:0.55,0.34:38
chr5	13894894	rs4701997	T	A	7075.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:152,332:0.69:484
chr5	13900345	rs1445823	A	G	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:202,86:0.30:288
chr5	13902220	rs1530498	T	C	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-1.995;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:95,50:0.34:145
chr5	13911405	rs3765045	G	T	1625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.021;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-0.348;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:35,75:0.68:110
chr5	13911700	rs34152978	GAA	G	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.803;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr5	13911704	rs67065537	A	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr5	13913885	rs3213936	A	G	1438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=3.269;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:266,100:0.27:366
chr5	13914556	rs13179761	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=1.068;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr5	13914775	rs13180591	G	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr5	13914796	rs13162553	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:57,24:0.30:81
chr5	13914819	rs13180613	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr5	13919255	rs35925547	T	G	3886.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:90,183:0.67:273
chr5	13928085	rs12659700	T	C	1710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=1.246;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:229,104:0.31:333
chr5	13931205	rs1530497	G	C	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.068;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:353,99:0.22:452
chr5	13931340	rs1530496	C	T	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.859;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:118,40:0.25:158
chr5	13944512	rs339445	A	C	8650.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr5	13944756	rs78610465	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.69;ReadPosRankSum=-1.931;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr5	14183866	rs354302	T	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	14183979	rs71597901	CAG	C	1976.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	14184022	rs354301	G	A	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	14184079	rs354300	G	A	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	14184211	rs354299	T	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	14184254	rs354298	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	14290805	rs30629	G	A	8187.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr5	14366840	rs30784	T	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	14369425	rs116225615	G	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:205,86:0.30:291
chr5	14377962	rs30769	A	C	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	14378068	rs30770	T	G	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	14388797	rs57751910	G	GT	655.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=2.68;ReadPosRankSum=1.059;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:162,83:0.34:245
chr5	14420027	rs30612	A	C	17427.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr5	14441274	.	G	C	146.77	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr5	14471666	rs27091	T	A	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	14472626	rs26186	T	C	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	14474283	rs11749307	G	A	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr5	14479938	rs26173	G	A	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.373;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	14481880	rs34046917	CTTT	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=-0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.77;ReadPosRankSum=-0.310;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr5	14485161	.	G	GT	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.293;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:112,46:0.29:158
chr5	14610184	rs25960	C	G	2198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=1.537;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:34,107:0.76:141
chr5	14664821	rs250435	G	A	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	14678996	rs31930	G	A	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	14741921	rs187483	A	C	9773.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:241,471:0.66:712
chr5	14749551	rs697569	T	C	226.78	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr5	14751399	rs697570	C	T	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	14769075	rs73048890	C	T	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:192,72:0.27:264
chr5	14871620	rs139106733	AGGGGCGAC	A	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.703;QD=6.18;ReadPosRankSum=-2.425;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr5	15927873	.	TAAAAAAA	T	1676.73	.	AC=2;AF=1.00;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	1/1:3,51:0.94:54
chr5	16091242	rs11389357	G	GA	496.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr5	16177807	rs2582666	A	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	16179125	rs342550	C	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	16474778	rs11428210	C	CT	721.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.308;QD=4.15;ReadPosRankSum=1.752;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:103,71:0.41:174
chr5	16477751	rs162850	C	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.879;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr5	16478120	rs162849	A	G	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:103,43:0.29:146
chr5	16478200	rs162848	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:98,33:0.25:131
chr5	16479151	rs6883888	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr5	16508674	rs332811	A	G	1582.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:192,92:0.32:284
chr5	16508898	rs33684	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.353;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr5	16617099	rs35003	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	16667003	rs26743	C	T	8534.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr5	16667065	rs33273	C	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr5	16668256	rs35579	A	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr5	16670618	rs27431	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr5	16673975	rs25901	C	G	5806.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	16676103	rs28057	T	C	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	16679914	rs10060411	G	A	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=25.42;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	16679926	rs3217321	G	GC	1918.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.89;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	16679966	rs35580	C	T	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	16681966	rs399833	G	A	10428.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr5	16684109	rs2303703	T	C	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	16694384	.	T	C	185.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr5	16699512	rs256930	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,9:0.21:42
chr5	16704806	rs3860136	G	A	4096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=924;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.862;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:655,268:0.29:923
chr5	16711087	rs26740	C	T	9250.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:225,437:0.66:662
chr5	16711365	rs3214558	CA	C	7484.73	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr5	16711451	rs27552	G	T	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	16762646	rs31511	T	C	8165.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	16764255	rs375881422	CA	C	2244.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:13,132:0.91:145
chr5	16766093	rs2561232	C	T	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	16769273	rs11750538	G	A	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	16783711	rs4702172	T	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	16815530	rs60498681	G	C	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.599;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.079;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:29,36:0.55:65
chr5	16818363	rs12188582	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr5	16877701	rs7710976	C	G	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.379;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	16916071	rs145081788	GAA	G	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.114;QD=9.04;ReadPosRankSum=0.410;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:31,30:0.49:61
chr5	17276053	rs59080603	CCT	C	1707.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	19503243	rs6867491	C	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:126,44:0.26:170
chr5	19520932	rs441865	T	C	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:297,146:0.33:443
chr5	19591174	rs17285716	A	G	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.586;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:147,59:0.29:206
chr5	19721490	rs12187552	T	C	14339.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr5	21751718	rs66936623	AGTGT	A	1141.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,38:0.83:46
chr5	21751760	.	T	TGTGTGTGTGTGA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=5.491;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-0.131;QD=0.57;ReadPosRankSum=1.414;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr5	21752050	rs6451992	A	G	5416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-1.069;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:286,149:0.34:435
chr5	21752056	rs6451993	A	G	5466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-1.380;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:284,156:0.35:440
chr5	21760602	rs2303748	C	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr5	21817206	rs17328673	T	C	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:427,187:0.30:614
chr5	22078584	rs4371716	C	T	10033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-0.804;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:228,470:0.67:698
chr5	23510158	rs34033521	AT	A	810.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=1.649;QD=7.17;ReadPosRankSum=-0.611;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:28,85:0.75:113
chr5	23510203	rs2973615	A	G	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	23523348	rs1874165	C	T	8764.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:1,342:1.00:343
chr5	23527919	rs2099081	A	G	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	23976115	rs1501940	G	A	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:232,108:0.32:340
chr5	24487913	.	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.159;ClippingRankSum=0.000;DP=500;ExcessHet=3.0103;FS=176.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=3.910;SOR=9.624;set=HC	GT:AD:AF:DP	0/1:371,122:0.25:493
chr5	24509947	rs3797171	C	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr5	24511368	rs3797168	C	T	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,63:0.66:96
chr5	24511654	rs201402189	CAGAGAGAGAG	C	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.770;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-1.629;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr5	25190672	rs55966917	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr5	26903557	rs9687840	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr5	26905920	rs5866810	GT	G	741.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	26988328	rs2288466	G	A	3973.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:73,185:0.72:258
chr5	26988424	rs2288467	T	C	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=0.812;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:41,79:0.66:120
chr5	31302288	rs2287582	C	T	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.923;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:320,100:0.24:420
chr5	31317494	rs2302904	C	T	2749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.439;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:506,189:0.27:695
chr5	31317529	rs2302903	A	G	3129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.920;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:600,221:0.27:821
chr5	31317952	rs2229575	T	C	2683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.949;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:393,171:0.30:564
chr5	31322851	rs2962790	A	G	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	31405874	.	CTTTTTT	C	1195.73	.	AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;QD=36.23;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	31407139	rs507816	G	C	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	31409115	rs644236	T	C	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr5	31409252	rs2241337	A	G	9735.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr5	31410679	rs2287583	C	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	31423007	rs2287584	T	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	31449241	rs371567874	CA	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-0.348;QD=1.37;ReadPosRankSum=0.969;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr5	31483596	rs10052174	G	A	10384.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr5	31483753	rs11341915	GA	G	869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.904;QD=8.05;ReadPosRankSum=0.876;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:29,79:0.73:108
chr5	31485230	rs7712436	T	C	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	31486540	rs7735863	A	G	16455.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,625:1.00:625
chr5	31508933	rs56327412	G	GT	780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-1.714;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:118,70:0.37:188
chr5	31511106	rs13183642	G	T	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:1,219:1.00:220
chr5	31526371	rs61748191	T	C	9270.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:216,435:0.67:651
chr5	31529299	rs6859527	A	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.56;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	31529306	rs6450850	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	31532429	rs2291109	A	T	7089.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	31541007	rs6878711	T	A	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=0.511;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr5	31541212	.	AGT	A	371.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.59;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	31799371	rs116598198	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:54,18:0.25:72
chr5	32000483	rs10054504	T	C	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	32037569	rs923834	A	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	32054092	rs149414	C	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	32057651	rs161545	G	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	32058115	rs151861	A	G	15710.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr5	32060985	rs35665699	T	TATC	2464.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	32072213	rs3797064	A	C	2529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-0.549;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:358,157:0.30:515
chr5	32101168	rs2279232	A	T	12347.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr5	32135599	rs161539	G	A	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	32209751	rs202157337	TA	T,TTAA	861.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.78;QD=33.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:0,6,20:0.23,0.77:26
chr5	32242381	rs7729256	G	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.654;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	32248077	rs11960898	C	T	6411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=0.652;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:185,316:0.63:501
chr5	32263099	rs61418287	G	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:43,86:0.67:129
chr5	32268614	rs72294899	T	TA	121.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.818;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr5	32270747	rs59928961	C	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr5	32276634	rs57425852	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr5	32379210	rs1862636	G	A	10936.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr5	32388471	rs889318	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.78;ReadPosRankSum=-1.795;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr5	32388485	rs3811972	G	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.916;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr5	32400266	rs1051489	A	G	4293.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:110,198:0.64:308
chr5	32403346	rs4867440	C	T	23395.77	.	AC=2;AF=1.00;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	1/1:0,911:1.00:911
chr5	32415360	rs5867145	TA	T	1236.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	32417694	rs178935	G	A	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	32419805	rs7445799	T	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr5	32444199	rs2922295	C	G	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.675;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:51,34:0.40:85
chr5	32444286	rs183443	A	G	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=1.287;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:221,93:0.30:314
chr5	32522994	rs17439827	A	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:212,111:0.34:323
chr5	32523298	rs687659	T	A	1320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=2.618;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-12.075;QD=3.63;ReadPosRankSum=-0.965;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:272,92:0.25:364
chr5	32523343	rs2457151	C	T	10979.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr5	32711000	rs34939454	A	ATG	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=0.065;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr5	32775047	rs1173743	G	T	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	32784776	rs2246427	A	G	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.241;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.862;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:96,38:0.28:134
chr5	32786389	rs2270915	A	G	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.860;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:305,133:0.30:438
chr5	32786465	.	C	CT	766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.149;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:499,125:0.20:624
chr5	32789852	rs1173756	T	C	22883.77	.	AC=2;AF=1.00;AN=2;DB;DP=912;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,904:1.00:904
chr5	33441403	rs55759090	A	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr5	33448962	rs5867190	A	AT	1366.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	33453368	rs35931457	CT	C	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.292;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=6.935;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.979;QD=3.36;ReadPosRankSum=0.399;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:55,49:0.47:104
chr5	33455943	rs55749081	AT	A	2387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.888;QD=13.27;ReadPosRankSum=-0.734;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:50,130:0.72:180
chr5	33457535	rs2270903	T	A	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:47,101:0.68:148
chr5	33457618	rs1003000	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr5	33458636	rs3765145	G	A	3633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=1.500;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:85,174:0.67:259
chr5	33458833	rs3765146	T	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr5	33546113	rs11338120	TA	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.548;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.562;QD=1.96;ReadPosRankSum=-1.251;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr5	33546207	rs61753559	T	C	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.094;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.732;QD=5.98;ReadPosRankSum=-1.098;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:99,55:0.36:154
chr5	33561028	.	G	GA	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.283;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:113,34:0.23:147
chr5	33615904	rs10057235	G	A	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	33616311	rs4078398	T	C	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.310;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:61,21:0.26:82
chr5	33631142	rs7444287	C	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=1.655;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr5	33637594	rs10045908	G	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-2.719;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr5	33951693	rs16891982	C	G	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:180,62:0.26:242
chr5	33954511	rs2287949	T	C	9297.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr5	33963731	rs141348470	AAAC	A	1728.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	33964210	rs183671	T	G	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	33964241	rs6451048	A	G	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	33969170	.	C	CTCTCTCTCTCTCTCTCTCTCTG,CTGTGTGTGTGTG	2280	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=35;MMLQ=20;MQ=55.54;NF=0,0;NR=14,14;PP=2280,102;QD=163.071428571;SC=CTCTCTCTCTCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=38;TCF=1;TCR=37;TR=14,14;WE=33969178;WS=33969160;set=Platypus	GT:AF:DP	0/1:0.37:38
chr5	33988535	rs15612	C	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr5	33989518	rs2278008	C	T	2817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=710;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.255;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:504,193:0.28:697
chr5	33994116	rs10472909	A	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,15:0.26:58
chr5	33994316	rs11742345	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr5	33998883	rs2287939	A	G	2646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.669;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:449,174:0.28:623
chr5	34004707	rs10941112	C	T	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.425;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:280,104:0.27:384
chr5	34008100	rs3195676	C	T	5828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=1314;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=5.658;QD=4.48;ReadPosRankSum=-0.616;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:922,378:0.29:1300
chr5	34008206	rs3217251	CCGGCGCCACGCCCCCAGCCG	C	1224.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:87,40:0.31:127
chr5	34033670	rs299594	T	C	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	34035609	rs17583316	T	C	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	34687911	rs2279604	G	A	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.350;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	34688210	rs142375133	CGACAAA	C	12520.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr5	34716120	rs1867714	G	A	2015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.24;ReadPosRankSum=0.861;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:25,49:0.66:74
chr5	34716124	rs1867715	A	G	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=1.423;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:29,54:0.65:83
chr5	34716270	rs1867716	A	C	3820.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:68,177:0.72:245
chr5	34757666	rs17521570	G	A	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:57,107:0.65:164
chr5	34803675	rs66603667	AC	A	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	34807928	rs6895634	C	T	6911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=0.657;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:201,335:0.62:536
chr5	34808652	rs111951383	G	A	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.991;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:228,80:0.26:308
chr5	34808797	rs113312119	T	C	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=1.789;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:119,50:0.30:169
chr5	34810971	rs111531050	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.745;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr5	34811131	rs35607113	G	A	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-4.547;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:310,131:0.30:441
chr5	34811137	rs2271522	T	G	6744.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:122,316:0.72:438
chr5	34811794	rs114935797	T	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr5	34812408	rs112990724	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.949;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr5	34812489	rs111847320	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.901;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr5	34814900	rs17522675	A	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr5	34818976	rs3884194	GT	G,GTT	1943.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=162;set=Intersection	GT:AF:DP	1/2:0.68,0.25:143
chr5	34821825	rs10461947	C	T	4666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-0.044;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:134,229:0.63:363
chr5	34822926	rs7730728	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	34824555	rs1048944	G	T	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	34830788	rs17523026	C	T	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.890;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:270,105:0.28:375
chr5	34840841	rs6451173	A	G	3567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.265;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:500,225:0.31:725
chr5	34845473	rs336486	C	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	34863220	rs3846632	G	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	34880750	rs34549849	C	CT	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=1.716;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:104,29:0.22:133
chr5	34945812	rs6868348	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	34954588	rs37437	T	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	34998778	rs16899972	C	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-1.709;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:138,61:0.31:199
chr5	34998877	rs16899974	C	A	2396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=0.061;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:240,143:0.37:383
chr5	35010138	rs466067	A	G	19664.77	.	AC=2;AF=1.00;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	1/1:0,782:1.00:782
chr5	35025770	rs344515	G	A	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	35026683	rs344513	A	G	7952.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr5	35032769	rs237252	G	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	35033605	rs180749	G	A	7549.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr5	35033706	rs2291702	T	C	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.689;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.286;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:31,30:0.49:61
chr5	35035518	rs78167129	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,67:0.71:95
chr5	35035579	rs344156	A	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	35036997	rs37368	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:79,128:0.62:207
chr5	35037115	rs37369	C	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:148,57:0.28:205
chr5	35037230	rs72734512	C	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr5	35039437	rs2279651	A	G	2755.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:54,125:0.70:179
chr5	35039486	rs37370	C	T	3772.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:57,176:0.76:233
chr5	35047807	rs10223180	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr5	35700598	rs6451206	T	C	8918.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr5	35702209	rs35297265	G	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	35702212	rs11357084	GA	G	1129.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	35702306	rs6874120	A	G	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	35704584	rs7448971	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	35704892	rs10058349	G	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	35709095	rs13170082	C	T	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr5	35709184	rs13170390	G	C	8432.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr5	35712780	rs10078803	A	G	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	35713007	rs10073537	T	G	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	35727783	rs116248955	C	T	3550.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:70,157:0.69:227
chr5	35739960	rs10043875	A	G	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	35753715	rs11957963	T	C	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	35753924	rs62353693	T	C	11899.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr5	35763877	rs11298650	AG	A	4592.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	35763895	rs6876874	T	C	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	35763916	rs6895801	A	G	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	35764587	rs4869466	G	A	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	35764603	rs4869467	A	G	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	35764696	rs4242258	C	T	13092.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,512:1.00:512
chr5	35779112	rs114896374	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=-1.036;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	35792356	rs7730148	A	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	35795738	rs716971	T	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	35807070	rs36093359	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	35807455	rs7736291	T	G	7926.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr5	35857177	rs1353252	G	C	7585.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr5	35857235	rs1494561	C	G	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	35857262	rs1353250	A	G	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	35857308	rs5867289	T	TC	1591.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	35861068	rs1494558	T	C	13917.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,546:1.00:546
chr5	35871190	rs1494555	G	A	9981.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr5	35875593	rs987106	A	T	14284.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr5	35876274	rs3194051	A	G	7568.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr5	35904614	rs1833907	G	T	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	35921069	rs6859892	T	C	27998.77	.	AC=2;AF=1.00;AN=2;DB;DP=1108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,1090:1.00:1090
chr5	35921266	rs3734107	G	A	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	36037778	rs2247611	G	A	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	36049677	rs1287273	C	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	36051834	rs72303780	ATCCG	A	2525.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.76;ReadPosRankSum=-1.836;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:33,69:0.68:102
chr5	36051838	rs2591712	G	A	487.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=2.068;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:69,33:0.32:102
chr5	36111167	rs43189	A	T	111.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	36124514	rs13177876	A	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr5	36136675	rs267758	C	T	3770.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:79,172:0.69:251
chr5	36137620	rs267759	A	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	36141386	rs13156321	T	A	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:43,75:0.64:118
chr5	36142589	rs267764	T	A	2415.73	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:76,126:0.62:202
chr5	36142648	rs12658867	A	G	6468.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:157,303:0.66:460
chr5	36142818	.	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=2.374;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr5	36143392	rs267766	C	T	5255.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:115,251:0.69:366
chr5	36166827	rs34784319	C	CT	816.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.566;QD=12.38;ReadPosRankSum=-0.510;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:12,54:0.82:66
chr5	36168582	rs7736391	T	C	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	36176874	rs40030	G	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	36195448	rs11952882	A	G	6610.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.466;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	36201336	rs7705396	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	36207424	rs2303163	G	T	4162.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.02;ReadPosRankSum=1.686;SOR=0.536;set=HC	GT:AD:AF:DP	1/1:1,159:0.99:160
chr5	36217764	rs111441491	G	GTTAATCA	4190.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.55;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	36241922	rs62356073	G	A	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	36241988	rs34888491	G	C	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	36253937	rs4869473	G	A	10891.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,417:1.00:417
chr5	36257004	rs77621361	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.399;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr5	36257779	rs76783647	T	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-0.437;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr5	36260976	rs6881086	T	A	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	36268218	rs6869599	A	G	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	36269551	rs1035480	G	C	6721.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	36271491	rs5867310	CT	C	272.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.18;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	36301362	rs10941287	T	A	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=2.245;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	36301369	rs884692	T	G	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.39;SOR=2.044;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	36301420	rs884694	G	T	8400.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr5	36613053	rs7728680	A	G	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr5	36629529	.	C	CT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.525;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:90,25:0.22:115
chr5	36680125	rs2303716	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr5	36683801	rs56038114	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.30;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	36683809	rs11284736	CA	C	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=0.174;SOR=1.640;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr5	36683903	rs56039629	C	T	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	36958085	rs5867343	CA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.187;QD=2.81;ReadPosRankSum=-0.600;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr5	37003501	rs62654860	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:45,62:0.58:107
chr5	37007629	rs159753	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr5	37019354	rs300060	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr5	37036449	rs10554564	GTA	G	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=1.468;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr5	37061261	rs188541	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.34;ReadPosRankSum=0.360;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	37121983	.	G	GT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=2.375;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr5	37242941	rs376022376	TA	T	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.600;QD=2.62;ReadPosRankSum=-0.269;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr5	37247700	rs6876576	G	A	5747.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.88;ReadPosRankSum=-0.952;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:2,229:0.99:231
chr5	37292319	rs11419789	A	AT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.538;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.071;QD=2.49;ReadPosRankSum=0.273;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr5	37294473	rs1045908	T	C	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:91,129:0.59:220
chr5	37309371	rs3835198	TAGA	T	3988.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:51,100:0.66:151
chr5	37318295	rs217797	G	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr5	37364443	rs217852	C	T	9005.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr5	37392279	.	G	GT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.059;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr5	37479853	rs76523401	T	G	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-1.178;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr5	37516812	rs199976916	TAC	T	59.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=0.078;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	37516814	rs1967541	C	T	129.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.143;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.81;ReadPosRankSum=0.707;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	37516829	rs56721754	T	A	261.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.611;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.81;ReadPosRankSum=2.100;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:2,10:0.83:12
chr5	37516831	.	T	A	307.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=2.081;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,10:0.83:12
chr5	37687843	rs35188065	AT	A	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.582;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:60,22:0.27:82
chr5	37724932	rs3214462	CATT	C	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr5	37724990	rs7444391	G	A	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	37752415	rs1549252	A	G	107.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	37752460	rs1549251	T	C	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	37752497	rs2973079	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	38338761	rs17339367	C	T	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:43,120:0.74:163
chr5	38352476	rs2589812	C	T	3710.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:85,176:0.67:261
chr5	38370537	rs1465567	T	C	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:80,133:0.62:213
chr5	38407273	rs111320305	A	AT	1967.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr5	38407888	rs2961882	T	C	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr5	38408093	rs60540056	C	G	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.196;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:189,62:0.25:251
chr5	38412674	rs16903965	C	T	4567.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:131,224:0.63:355
chr5	38418035	rs56070719	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr5	38510481	rs34968906	AC	A	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=1.042;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr5	38510603	rs61748202	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:146,47:0.24:193
chr5	38512154	rs1037033	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.697;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.484;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:32,5:0.14:37
chr5	38527228	rs2289779	T	G	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:47,86:0.65:133
chr5	38528951	rs34759137	GAC	G	1930.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:48,84:0.64:132
chr5	38528971	.	CACACACACAG	C	768.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.134;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:108,38:0.26:146
chr5	38530485	rs11293177	CA	C	187.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	38820752	rs143325273	TAAAGA	T	4544.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:48,113:0.70:161
chr5	38820807	rs62354662	T	C	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr5	38822029	rs111307794	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr5	38822040	rs413278	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr5	38823254	rs369886	C	T	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,78:0.68:114
chr5	38823306	rs62354666	A	G	6063.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:60,149:0.71:209
chr5	38823344	rs12651771	AC	GT	8123.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;JOINED;set=Intersection	GT:AD:AF:DP	0/1:82,200:0.71:282
chr5	38823462	rs12651783	A	G	7259.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:205,357:0.64:562
chr5	38876573	rs357271	T	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	38881628	rs525735	G	T	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=1.353;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr5	38884071	rs34675408	T	G	3875.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:62,173:0.74:235
chr5	38885353	rs2289924	C	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr5	38885647	rs113727379	C	T	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:83,134:0.62:217
chr5	38903923	rs11949864	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-2.050;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr5	38904363	rs1239334	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	38917574	rs357260	G	A	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	38917904	rs357262	G	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	38919158	rs10941412	G	A	2600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.035;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:518,178:0.26:696
chr5	38923171	rs357293	T	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	38931919	rs357277	G	A	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	38932466	rs357278	A	C	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	38942554	rs200385182	A	AT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=2.511;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:113,29:0.20:142
chr5	38945919	rs62352642	C	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	38950776	rs2115949	G	A	7498.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr5	38953427	rs2115948	T	C	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	38953447	rs2115947	T	A	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	38953665	rs33912683	G	GA	1103.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.07;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	38954994	rs9292726	T	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	38955796	rs2043112	G	A	10194.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr5	38958968	rs6868591	A	C	954.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.758;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.29;ReadPosRankSum=-0.741;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr5	38959794	rs2115946	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	38962543	rs7729745	A	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	38966903	rs11435048	A	ATT	776.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=13.16;ReadPosRankSum=1.014;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:11,48:0.81:59
chr5	38971865	rs13165709	A	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	38971912	rs7732615	T	A	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	38990957	.	T	TATGAGATATATGATATATATATGATAG	999.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.48;QD=66.65;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	39021369	rs13177690	G	A	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	39074296	rs2303808	G	C	48583.77	.	AC=2;AF=1.00;AN=2;DB;DP=1912;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,1889:1.00:1889
chr5	39107353	rs404122	T	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	39108309	rs377022	A	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	39108322	rs430630	A	G	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	39119723	rs379707	C	A	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	39285139	rs261738	T	A	110.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.82;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	39342308	rs476569	C	T	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=1.638;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:119,40:0.25:159
chr5	39375082	rs2686162	C	T	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	39377418	rs2738238	G	A	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	39390061	rs2855512	C	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	39390121	rs34356831	A	AT	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr5	39394493	rs1050903	G	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr5	40716153	rs10737963	C	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr5	40772071	rs837103	C	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	40834864	rs3816959	T	C	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:24,72:0.75:96
chr5	40835425	.	G	A	5206.77	.	AC=1;AF=0.500;AN=2;DP=336;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:102,229:0.69:331
chr5	40841741	rs10512747	C	T	3656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-1.365;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:89,173:0.66:262
chr5	40852451	rs188934	C	G	11536.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr5	40949997	rs1450656	C	T	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	40955561	rs1063499	G	C	9267.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr5	40964852	rs13157656	A	C	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:48,131:0.73:179
chr5	40964885	rs60714178	A	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:230,86:0.27:316
chr5	40972017	rs11747673	A	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	40972111	rs10805655	C	T	10006.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr5	40980086	rs1450664	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr5	40981689	rs1061429	C	A	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:131,64:0.33:195
chr5	40997996	rs2271707	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	40998041	rs77023219	A	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr5	40998196	rs704040	T	C	5761.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	40998235	rs722575	C	T	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:69,128:0.65:197
chr5	40998814	rs2876850	T	A	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:54,148:0.73:202
chr5	40998851	rs2329435	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-1.190;SOR=1.469;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr5	40999900	rs1376175	T	A	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:25,59:0.70:84
chr5	41000243	rs1376177	G	A	379.81	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr5	41000343	rs1001420	G	A	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	41001023	rs2167229	G	A	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	41004396	rs7712140	G	T	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	41004807	rs2305314	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr5	41005791	rs10941529	T	C	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=1.384;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:119,74:0.38:193
chr5	41008780	rs2271704	A	G	7282.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:172,350:0.67:522
chr5	41009899	rs1878290	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr5	41018452	rs10054110	A	T	4623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=2.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=-1.195;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:144,223:0.61:367
chr5	41032998	rs325831	A	G	4363.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	41033112	rs4957367	G	A	7230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=-0.733;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:147,341:0.70:488
chr5	41033909	rs143823987	ATCTATCTATCTATC	A	1604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.24;MQRankSum=5.041;QD=17.83;ReadPosRankSum=-1.720;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:45,45:0.50:90
chr5	41033931	.	C	CTATT	2536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=61.45;MQRankSum=-5.489;QD=18.38;ReadPosRankSum=-3.432;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:58,80:0.58:138
chr5	41033992	rs67027762	G	T	12456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=925;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-5.952;QD=13.51;ReadPosRankSum=2.128;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:326,596:0.65:922
chr5	41034181	rs325833	A	G	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	41039000	rs325849	A	G	5307.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.032;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=3.113;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=0.513;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:1,212:1.00:213
chr5	41042284	rs325854	G	T	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	41045730	rs11297360	CT	C	1502.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:10,91:0.90:101
chr5	41045768	rs325860	G	A	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr5	41045835	rs6864243	C	G	7136.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:142,340:0.71:482
chr5	41048388	rs325861	T	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:105,50:0.32:155
chr5	41049389	rs325863	T	C	15282.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr5	41049397	rs325864	C	T	15342.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr5	41050999	rs325866	C	T	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	41054934	rs325874	A	G	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.313;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:288,122:0.30:410
chr5	41057562	rs618334	T	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	41061715	rs1023840	C	T	6143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.88;ReadPosRankSum=-0.609;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:103,284:0.73:387
chr5	41061715	.	CA	TG	2181	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=94;NR=64;PP=2181;QD=14.1422017396;SC=CATTATATACCAGAACAGCAT;SbPval=0.57;Source=Platypus;TC=203;TCF=119;TCR=84;TR=158;WE=41061724;WS=41061705;set=Platypus	GT:AD:AF:DP	0/1:45,158:0.78:203
chr5	41061716	rs865093	A	G	15280.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.28;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr5	41061871	rs587412	T	C	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.898;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:220,88:0.29:308
chr5	41149235	rs1014587	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr5	41149284	rs1014588	G	A	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:37,92:0.71:129
chr5	41154150	rs4957374	A	C	2355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-2.332;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:38,107:0.74:145
chr5	41158671	rs10075985	T	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-0.858;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr5	41158863	rs6866352	G	A	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr5	41381901	rs35812696	T	TC	589.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	41382681	rs319013	G	T	11702.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.92;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr5	41382691	rs545358	C	A	10426.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	42700044	rs6179	A	G	8362.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr5	42718335	rs76362844	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	42769632	rs12055087	C	A	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	42769647	rs12055266	T	C	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	42769844	rs1109882	G	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	42779686	rs11427149	G	GA	1953.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.270;QD=20.78;ReadPosRankSum=-1.401;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:4,90:0.96:94
chr5	42799719	rs4041462	T	TTTA	1750.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	42800808	rs7579	C	T	5740.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	42804983	rs4143864	C	A	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	43039618	rs76498907	G	T	4722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=990;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=2.001;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:682,305:0.31:987
chr5	43039793	rs1054428	T	C	5710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DB;DP=1068;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.077;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:711,345:0.33:1056
chr5	43066774	rs316408	T	C	10095.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,396:1.00:397
chr5	43122348	rs60096743	CTT	C	196.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=14.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=1.170;SOR=4.973;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr5	43161317	rs55714804	T	C	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-0.795;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr5	43292483	rs113830463	C	CTTACTATGAA	1623.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	43292808	rs9292869	A	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr5	43292908	rs55794239	C	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=1.632;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr5	43294357	rs138459217	TAAGTAA	T	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.568;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=2.575;QD=6.26;ReadPosRankSum=-0.036;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr5	43296165	rs12520012	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.64;ReadPosRankSum=-0.566;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr5	43297032	rs3733768	C	T	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	43297144	rs3733769	A	G	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:369,158:0.30:527
chr5	43298557	rs35239179	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr5	43388399	rs3822423	G	T	3346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-0.039;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:90,162:0.64:252
chr5	43388439	rs3733767	G	T	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:89,163:0.65:252
chr5	43492265	rs6876588	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	43492978	rs10039298	G	A	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	43493592	rs7732089	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	43509348	rs6872851	T	A	7675.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	43509462	rs11415989	T	TC	4186.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	43527673	rs4318791	C	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	43533992	rs11741521	A	G	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	43537051	rs79252214	C	T	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.504;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:114,49:0.30:163
chr5	43609343	rs10057103	C	T	8355.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:211,402:0.66:613
chr5	43612982	rs71839404	TA	T	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=2.860;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:27,41:0.60:68
chr5	43613046	rs35201656	A	G	4842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-4.110;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:108,223:0.67:331
chr5	43619359	rs3792915	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	43628541	rs77465034	T	A	354.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr5	43644442	rs3764980	G	A	1891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=1.451;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:97,97:0.50:194
chr5	43644481	rs3764979	G	A	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.830;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:67,57:0.46:124
chr5	43644488	rs368731006	G	GT	903.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=0.831;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:50,42:0.46:92
chr5	43645663	rs143796087	T	TTA	2664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.08;ReadPosRankSum=-0.740;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:71,85:0.54:156
chr5	43645710	rs71590644	T	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr5	43645744	rs71590645	T	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr5	43647964	rs16873435	T	C	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-1.993;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:41,42:0.51:83
chr5	43647996	rs35773822	C	CAA	3167.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:66,77:0.54:143
chr5	43650790	rs74394882	T	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:45,72:0.62:117
chr5	43650816	rs6862487	T	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr5	43652044	rs3840358	T	TAATC	2741.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:38,71:0.65:109
chr5	43652072	rs3805723	G	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr5	43653243	rs41271083	C	T	5400.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:190,263:0.58:453
chr5	43659571	rs6451720	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=2.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	43702887	rs2303732	A	G	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:78,152:0.66:230
chr5	43704542	rs55984047	C	G	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:227,130:0.36:357
chr5	43704556	rs16873502	G	A	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:100,178:0.64:278
chr5	44809162	rs3747479	G	C	8207.77	.	AC=1;AF=0.500;AN=2;DB;DP=906;set=Intersection	GT:AD:AF:DP	0/1:476,425:0.47:901
chr5	44811207	rs72756207	T	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:111,120:0.52:231
chr5	45396488	rs35841808	C	CT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.872;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr5	49698180	rs13172025	G	A	1524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-5.383;QD=8.47;ReadPosRankSum=-0.898;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:101,79:0.44:180
chr5	49698986	rs13154223	C	A	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-0.718;QD=6.40;ReadPosRankSum=1.523;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:89,57:0.39:146
chr5	49701755	rs2271236	A	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.23;MQRankSum=-4.467;QD=3.76;ReadPosRankSum=-1.420;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr5	49963235	rs62366937	C	T	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr5	50040778	rs282561	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=4.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.05;ReadPosRankSum=-1.041;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr5	50045967	rs2442107	G	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,42:0.39:108
chr5	50046139	rs282553	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.38;ReadPosRankSum=0.712;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr5	50052800	rs282551	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr5	50052888	rs282550	C	A	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:74,62:0.46:136
chr5	50053015	rs282549	G	A	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:150,108:0.42:258
chr5	50053101	.	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=26.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=3.465;SOR=4.975;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr5	50055456	rs201071119	C	CTT	668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-2.087;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:26,52:0.67:78
chr5	50057729	rs282547	G	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr5	50084508	rs10683094	C	CCTT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.47;ReadPosRankSum=0.703;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr5	50122645	rs35290606	GT	G	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.712;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:58,53:0.48:111
chr5	52084365	rs10067659	G	C	8879.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr5	52084441	rs2897351	C	A	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	52096889	rs1499280	C	A	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr5	52097764	rs11886	T	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	52157374	rs2447867	T	C	2457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-1.342;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:149,133:0.47:282
chr5	52161500	rs11427012	G	GC	2644.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:85,79:0.48:164
chr5	52189765	rs35782834	C	CT	42.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.34;ReadPosRankSum=1.534;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr5	52193237	rs870992	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr5	52193287	rs1531545	C	T	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.143;QD=7.06;ReadPosRankSum=-0.816;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:163,107:0.40:270
chr5	52193414	rs377107895	C	CA	11184.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=29.36;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr5	52193518	rs17829997	A	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr5	52204943	rs1478441	C	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	52223350	rs923837	A	G	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:161,142:0.47:303
chr5	52223516	rs10038773	C	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr5	52235802	rs1904165	T	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	52235854	rs2447874	T	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	52243059	rs3764924	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr5	52243361	rs3764923	A	C	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.665;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:47,47:0.50:94
chr5	52248034	rs11420959	G	GA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.881;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr5	52248291	rs1054085	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.693;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr5	52285117	rs28095	T	C	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr5	52337908	rs3212441	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:63,40:0.39:103
chr5	52338083	rs1363192	T	G	2035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=0.002;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:68,101:0.60:169
chr5	52341064	rs1421937	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr5	52344610	rs1421933	A	G	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	52347369	rs1126643	C	T	3020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=0.220;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:195,163:0.46:358
chr5	52351413	rs1062535	G	A	3089.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:146,155:0.51:301
chr5	52354103	rs996765	A	T	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	52355854	rs2303127	T	C	1746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.056;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:68,85:0.56:153
chr5	52366138	rs2112290	G	A	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	52367666	rs2287872	A	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	52367706	rs2287871	T	C	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:57,64:0.53:121
chr5	52368922	rs984966	T	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr5	52370174	rs3212591	G	A	3143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=1.757;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:127,156:0.55:283
chr5	52374527	rs3212605	TTAAA	T	403.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr5	52379277	rs2303122	C	T	2505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=0.888;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:153,132:0.46:285
chr5	52396439	rs3214755	GA	G	960.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	52404312	rs153602	C	T	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.190;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	52405432	rs62359375	T	A	2528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-0.139;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:117,128:0.52:245
chr5	52781376	rs33951575	GTT	G	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.218;QD=5.92;ReadPosRankSum=0.694;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:69,38:0.36:107
chr5	52781597	rs722910	A	T	764.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr5	52781902	.	CA	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.601;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr5	52856504	rs2279516	G	C	6262.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	52856716	rs1532163	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	52869671	rs10471866	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.77;ReadPosRankSum=-0.760;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr5	52899166	.	C	CTT	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=1.126;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr5	52942083	rs31304	A	C	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	52942197	rs31303	A	G	8015.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr5	52954514	rs535277	T	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr5	52978774	rs2290696	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=-1.068;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr5	52978776	rs3085740	GGATT	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	52979097	rs567	G	A	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=1.024;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:27,58:0.68:85
chr5	53371315	rs70986658	C	CT	1055.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:15,64:0.81:79
chr5	53371333	rs156384	A	G	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	53606295	rs35941	T	C	13220.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.904;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.088;QD=25.52;ReadPosRankSum=1.033;SOR=0.241;set=HC	GT:AD:AF:DP	1/1:1,517:1.00:518
chr5	53751901	rs7699	G	A	5351.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:273,272:0.50:545
chr5	53751988	rs7823	T	C	3444.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:190,181:0.49:371
chr5	53813830	rs76854460	A	C	4134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=2.228;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:198,225:0.53:423
chr5	53814052	rs2548615	T	C	9849.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:2,385:0.99:387
chr5	53814394	rs2548614	T	C	10240.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr5	53815066	rs2548613	C	A	6899.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:289,334:0.54:623
chr5	53815219	rs35241631	G	A	8180.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:390,404:0.51:794
chr5	53815240	rs61739378	G	C	7560.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:413,393:0.49:806
chr5	53815495	rs2548612	A	C	2906.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:193,157:0.45:350
chr5	53815722	rs2565014	G	A	314.31	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr5	54153803	rs10040872	C	T	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	54154328	rs4242050	C	T	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	54252345	rs6877572	T	C	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:132,105:0.44:237
chr5	54252463	rs6893219	C	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr5	54253339	rs2897761	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr5	54253555	rs3815922	A	G	2037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.641;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:103,106:0.51:209
chr5	54253581	rs3815923	A	G	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:104,113:0.52:217
chr5	54253615	rs11954366	C	T	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:100,110:0.52:210
chr5	54253635	rs3815924	T	C	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:92,97:0.51:189
chr5	54253754	rs6883914	T	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	54319997	rs3822315	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.197;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr5	54320700	rs9292078	C	T	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr5	54403957	rs3104233	T	C	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	54404015	rs1875506	C	T	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	54410120	rs3104230	A	C	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	54433393	rs336081	G	A	9770.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr5	54439466	rs1021580	G	A	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	54459961	rs381852	A	G	6764.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr5	54468577	.	CTTTTTT	C	875.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=33.68;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr5	54468921	rs336115	C	T	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	54516521	rs6879219	G	A	17005.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:1,663:1.00:664
chr5	54516752	rs3111181	C	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	54517102	rs34101652	C	CT	294.74	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr5	54518660	rs7730048	G	A	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	54552380	.	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=1.526;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:73,14:0.16:87
chr5	54557438	rs400437	T	C	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	54563775	rs143912964	TTTA	T	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	54693374	rs230802	G	A	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	54693402	rs230801	G	A	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	54706325	rs139320115	T	TTTTAAA	12734.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr5	54709943	rs230766	G	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=24.94;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	54718618	rs230753	G	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	54721619	rs3217330	A	AT	1155.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:5,59:0.92:64
chr5	54721642	rs230750	A	C	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	54737538	rs2278258	T	C	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	54737791	rs2278257	G	C	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	54771380	rs6870449	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	54804621	rs7707766	C	T	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	54830295	rs2292280	T	G	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	54830380	rs11745331	A	G	8612.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr5	54941810	rs6450329	TG	CA	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	54944945	rs35843566	TA	T	68.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	54944976	rs11738633	G	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	54948586	rs138550751	C	CA	4648.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	54948598	rs11424790	C	CA	4605.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	54952688	rs11397177	C	CTT	749.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.99;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	54960609	rs4865614	A	G	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr5	54960673	rs4865615	C	G	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	54960687	rs4865616	C	T	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	54964974	rs7737254	A	G	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	54965513	rs11749883	C	T	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	54965854	rs2408031	G	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	54986963	rs3846505	A	G	9519.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr5	54990005	rs7728664	C	T	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	54990035	rs10654694	C	CA,CAA	1996.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.940;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.492;QD=13.77;ReadPosRankSum=0.411;SOR=0.840;set=HC	GT:AD:AF:DP	1/2:28,36,81:0.25,0.56:145
chr5	54993829	rs3761766	A	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	54993929	rs3761767	A	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	55034756	.	AT	A	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-3.200;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:113,34:0.23:147
chr5	55112262	rs35519120	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-0.800;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr5	55149407	rs10940487	T	C	7769.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	55155402	rs1009639	C	T	8042.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr5	55212446	rs16884641	T	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr5	55213023	rs161699	C	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr5	55246001	rs4865999	A	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	55252984	.	CA	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.208;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr5	55255565	rs1373998	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr5	55265289	rs3729959	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr5	55297551	rs6883325	T	A	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=0.485;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:74,68:0.48:142
chr5	55398217	rs36060683	CA	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.851;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr5	55398269	rs318818	G	C	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	55406952	rs321775	T	C	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:141,112:0.44:253
chr5	55407542	rs321776	C	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,59:0.55:107
chr5	55412347	rs318805	A	G	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-0.195;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr5	55422681	rs321768	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr5	55528572	rs142447793	A	AACAC	533.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr5	55528815	rs149489	T	C	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:124,150:0.55:274
chr5	55753652	rs16877004	C	T	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-0.061;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:55,42:0.43:97
chr5	55753822	rs148833159	C	CA	2334.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:85,78:0.48:163
chr5	55759715	rs157851	T	C	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.72;ReadPosRankSum=-1.046;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr5	55759720	rs4081705	G	A	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=-1.949;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr5	55830865	rs39837	C	T	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=0.438;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:61,57:0.48:118
chr5	55851796	rs35483518	C	CA	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.808;QD=9.99;ReadPosRankSum=-0.054;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr5	55851872	rs78650987	G	A	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.716;QD=13.74;ReadPosRankSum=-0.340;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:20,43:0.68:63
chr5	56111751	rs28710284	G	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-1.675;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr5	56155672	rs56069227	A	G	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:73,56:0.43:129
chr5	56161787	rs832575	G	A	2922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.570;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:161,149:0.48:310
chr5	56177148	rs895380	A	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr5	56177743	rs832582	G	A	5419.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:303,271:0.47:574
chr5	56177848	rs5868032	TCAA	T	24451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=1455;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.550;QD=19.30;ReadPosRankSum=-1.349;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:624,643:0.51:1267
chr5	56178217	rs832583	A	C	7110.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:312,359:0.54:671
chr5	56179341	rs16886463	G	A	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:191,193:0.50:384
chr5	56180480	rs3736430	A	G	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:107,89:0.45:196
chr5	56209043	rs72145037	CTTTA	C	2391.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:58,64:0.52:122
chr5	56224485	rs10684065	T	TTGGC	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr5	56224714	rs252893	T	C	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.822;QD=7.81;ReadPosRankSum=2.325;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr5	56224832	.	ACT	A	115.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=0.210;QD=19.30;ReadPosRankSum=-1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr5	56226605	rs12657396	G	A	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chr5	56233541	rs2591968	G	A	3392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=2.168;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:147,102:0.41:249
chr5	56233551	rs2591967	C	G	3080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=1.548;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:105,81:0.44:186
chr5	56242774	rs2034244	T	C	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=1.638;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:96,61:0.39:157
chr5	56246276	rs34804097	A	AAAC	614.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr5	56246610	rs2662040	A	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	56255367	.	A	AT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-0.578;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:167,33:0.17:200
chr5	56526565	rs1544737	G	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	56526783	rs1130203	G	A	4539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=2.741;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:347,253:0.42:600
chr5	56527224	rs1862172	T	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	56543078	rs79762564	A	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr5	56546749	.	CT	C	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.164;QD=4.29;ReadPosRankSum=0.678;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:25,25:0.50:50
chr5	57750350	rs15009	C	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	57753456	rs702723	C	T	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	57754005	rs1848510	G	A	13789.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,531:1.00:531
chr5	57754132	rs697134	G	C	9127.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr5	57754808	rs697133	G	A	11738.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr5	57755703	rs3211270	C	T	8071.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr5	57790337	rs7704785	T	C	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	57842049	rs6870990	C	G	8773.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr5	58271713	rs112200987	T	TA	584.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-1.060;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:55,49:0.47:104
chr5	58284283	rs3805556	G	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.071;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:42,46:0.52:88
chr5	58286625	rs1553114	C	T	3041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.754;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.926;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:215,168:0.44:383
chr5	58286737	.	GA	G	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.467;QD=1.47;ReadPosRankSum=-1.647;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:144,53:0.27:197
chr5	58286836	rs1973451	A	G	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr5	58287553	rs3840337	AAAC	A	288.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr5	58289046	rs7737685	G	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr5	58289334	rs7724713	A	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr5	58295380	rs35776313	G	GTA	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.284;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr5	58297881	rs2968014	A	G	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:221,158:0.42:379
chr5	58334645	rs2279737	A	G	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:118,87:0.42:205
chr5	58453175	rs180875665	A	G	6181.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:237,305:0.56:542
chr5	58475985	rs9292194	G	C	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	58476117	rs9292195	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	58489218	rs1445950	G	A	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	58489384	rs27175	G	A	8456.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr5	58882331	rs11402131	C	CA	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.638;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.177;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr5	59725671	rs789390	T	G	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=11.95;ReadPosRankSum=-0.560;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:27,38:0.58:65
chr5	59894838	rs58987696	T	TA	37.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.40;ReadPosRankSum=-1.465;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	59899413	rs11740327	G	A	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	59940502	rs6877561	A	T	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	59984897	rs57521726	A	T	9024.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr5	59995820	rs9942410	G	C	14187.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr5	60063576	rs1460958	G	A	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=1.781;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr5	60083275	rs10072745	C	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:92,33:0.26:125
chr5	60170337	rs3117	A	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=1.913;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr5	60186618	rs2306350	C	T	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	60186975	rs2306351	C	A	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	60199363	rs4647102	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr5	60200461	.	GTATATATATATATATA	G	98.25	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	60200665	rs4647100	A	G	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.925;QD=10.61;ReadPosRankSum=0.176;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:45,55:0.55:100
chr5	60241142	rs158921	G	A	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:63,78:0.55:141
chr5	60369083	rs10471502	A	G	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=1.462;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:31,36:0.54:67
chr5	60448903	rs33927273	T	TAA	178.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.36;MQRankSum=0.366;QD=25.53;ReadPosRankSum=-0.792;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr5	60628153	.	G	GGGC	1613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-0.155;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:58,47:0.45:105
chr5	60628181	.	A	AGCG	943.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=3.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=1.135;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr5	60628540	.	GGGC	G	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-2.630;QD=4.99;ReadPosRankSum=-1.994;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr5	60628826	rs369791585	TG	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=16.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.375;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr5	60786880	rs7732234	C	T	267.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	60789949	.	CCA	C	99.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr5	60789972	.	CGG	C	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=1.209;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr5	60789973	.	GGA	ACG	294	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=4;MGOF=17;MMLQ=23;MQ=60.0;NF=3;NR=1;PP=294;QD=89.3669687156;SC=ACACACACACGGAGAGAGAGA;SbPval=0.89;Source=Platypus;TC=21;TCF=12;TCR=9;TR=4;WE=60789983;WS=60789963;set=Platypus	GT:AD:AF:DP	1/0:17,4:0.19:21
chr5	60789975	.	A	ACG	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=1.268;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr5	60790037	rs77230862	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.333;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-1.404;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:36,31:0.46:67
chr5	60827535	.	C	T	318.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr5	60939264	rs2441136	C	G	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:156,121:0.44:277
chr5	60939334	rs2455388	T	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:108,56:0.34:164
chr5	60939407	rs2463066	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr5	60981850	rs16893680	T	C	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.795;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:45,52:0.54:97
chr5	60982107	rs201629224	C	CTTT	638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.615;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:52,32:0.38:84
chr5	60982841	rs16893687	G	A	5149.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:288,268:0.48:556
chr5	61604204	rs4700006	C	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	61604456	rs4441833	T	C	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	61698040	.	C	T	3498.77	.	AC=1;AF=0.500;AN=2;DP=365;set=Intersection	GT:AD:AF:DP	0/1:188,172:0.48:360
chr5	61733348	rs153857	G	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	61745737	rs11329383	CT	C	2593.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:12,159:0.93:171
chr5	61762880	rs35119	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	61772535	rs26635	G	T	1893.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.474;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.302;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.59;ReadPosRankSum=-0.496;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,76:0.99:77
chr5	61785936	rs26644	T	C	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	61826663	rs32179	G	T	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	61857116	.	T	TTCGGCCGGGCGCGGTGGC	1525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.14;ReadPosRankSum=0.650;SOR=5.994;set=HC	GT:AD:AF:DP	0/1:1,39:0.97:40
chr5	61857119	.	A	ACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATG	947.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=39.49;ReadPosRankSum=-0.145;SOR=4.977;set=HC	GT:AD:AF:DP	0/1:1,23:0.96:24
chr5	61874619	.	TA	T	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.340;QD=1.97;ReadPosRankSum=-0.683;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:150,79:0.34:229
chr5	62073118	rs1845526	G	C	16228.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=25.01;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,649:1.00:649
chr5	63665293	rs56066106	TA	T	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.72;ReadPosRankSum=0.517;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr5	63665335	rs28615727	G	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr5	63802636	.	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.376;QD=1.14;ReadPosRankSum=-0.846;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:71,28:0.28:99
chr5	63890387	rs4700641	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.72;ReadPosRankSum=0.489;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr5	63905068	rs889248	A	G	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:185,156:0.46:341
chr5	63991512	rs275830	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr5	64023981	rs275819	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-0.652;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr5	64064411	rs3756739	G	C	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=3.275;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:88,59:0.40:147
chr5	64064943	rs1363953	G	A	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-2.451;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr5	64070617	rs140062546	A	AAATTATGAC	598.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr5	64077647	rs55793256	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.58;ReadPosRankSum=0.210;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr5	64077966	rs2011079	A	G	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.671;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr5	64084746	rs11340181	CT	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=0.726;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr5	64096046	rs79929128	CT	C	2024.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr5	64096170	rs6449760	G	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr5	64097145	rs7735338	C	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.885;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr5	64181525	.	G	GGTGTGTGTGT	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.310;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr5	64267431	rs2278352	A	G	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:89,71:0.44:160
chr5	64267595	rs2278351	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:65,55:0.46:120
chr5	64313879	rs2910769	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr5	64447777	rs17206779	C	T	2951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=0.668;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:188,160:0.46:348
chr5	64483759	rs16893475	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr5	64569405	rs1423424	T	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr5	64569420	rs1423425	G	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr5	64766519	rs181517355	A	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-1.000;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr5	64814188	rs3050538	AAGATGGC	A	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr5	64820507	.	C	CA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.470;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr5	64825102	rs1017576	C	T	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	64837105	rs4700085	C	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr5	64838584	rs6891597	G	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,47:0.52:90
chr5	64838758	rs6891955	G	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-1.280;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr5	64847543	rs6893491	T	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	64847582	.	C	T	115.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr5	64848412	rs3213939	C	T	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.422;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:87,70:0.45:157
chr5	64848442	rs3213938	T	C	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	64857424	rs10560318	AACAC	A,AACACAC	3382.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=152;set=Intersection	GT:AF:DP	1/2:0.58,0.38:106
chr5	64859884	rs35326591	CTG	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.84;ReadPosRankSum=-1.100;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr5	64863285	rs3756301	A	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr5	64863484	rs35529383	T	TA	441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.926;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:38,33:0.46:71
chr5	64864657	rs152063	A	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr5	64865405	rs149208	A	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-0.222;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr5	64865658	rs3752673	T	C	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr5	64880705	rs10682457	G	GAA	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr5	64880732	.	A	C	346.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr5	64881936	rs27141	A	G	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:113,109:0.49:222
chr5	64887472	.	T	TTATATA	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=0.223;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr5	64890479	rs36135	A	C	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.022;QD=6.97;ReadPosRankSum=1.598;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:98,92:0.48:190
chr5	64906617	rs37330	T	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.613;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=-1.176;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr5	64909487	rs16894099	A	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr5	64919991	rs154854	G	A	7276.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:336,366:0.52:702
chr5	64920803	rs37254	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr5	64925256	rs43207	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr5	64931971	rs5868412	C	CT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.401;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr5	64933457	.	C	CA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.290;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr5	64933505	rs11741124	A	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr5	64942799	rs154955	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr5	64942852	.	C	CT	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.552;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:49,45:0.48:94
chr5	64946836	rs154853	G	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr5	64957686	rs37347	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	64957718	rs37346	T	C	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr5	64960311	rs36031543	A	ATCTC	3181.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:79,84:0.52:163
chr5	64968170	rs5868414	AT	A	404.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.537;QD=12.65;ReadPosRankSum=0.223;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr5	65008946	rs3833969	GT	G	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.934;QD=6.88;ReadPosRankSum=1.394;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:38,39:0.51:77
chr5	65073224	rs34979	C	A	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	65075858	rs252648	A	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-0.167;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr5	65105622	rs2561196	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr5	65108215	rs2254485	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr5	65156435	rs74914131	G	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr5	65167288	rs76180983	G	T	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:126,100:0.44:226
chr5	65288791	rs27132	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.78;ReadPosRankSum=-0.084;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr5	65308055	rs706678	C	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-1.465;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr5	65317181	rs706679	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr5	65350374	rs36303	A	G	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:162,138:0.46:300
chr5	65372793	rs34201831	C	CT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.067;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr5	65455258	rs34136434	CT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.799;QD=0.87;ReadPosRankSum=1.543;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:68,24:0.26:92
chr5	65459773	rs3763061	T	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:66,38:0.37:104
chr5	66084378	rs2252849	A	G	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-1.152;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:59,79:0.57:138
chr5	66084676	rs183763	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr5	66166427	rs1160971	CAT	C	2242.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr5	66195701	rs458115	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr5	66212985	rs37567	C	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr5	66226652	rs80243092	G	A	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:111,109:0.50:220
chr5	66226741	rs4099838	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr5	66226798	rs4090993	T	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr5	66282428	.	T	TTA	494	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=1;MGOF=20;MMLQ=26;MQ=60.75;NF=0;NR=11;PP=494;QD=45.5454545455;SC=ATGTATGAATTTATATATATA;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=11;WE=66282436;WS=66282418;set=Platypus	GT:AD:AF:DP	1/1:5,11:0.69:16
chr5	66282447	rs59915268	T	TA	248.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.000;QD=16.58;ReadPosRankSum=1.900;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr5	66282448	rs58502962	T	TA	436.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;QD=31.20;SOR=4.804;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr5	66391516	.	C	CT	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.360;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:154,52:0.25:206
chr5	66406143	rs2545394	G	A	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:62,78:0.56:140
chr5	66416764	rs2254790	C	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=0.862;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr5	66429329	rs2371882	G	T	5853.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.789;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=3.512;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=1.555;SOR=0.601;set=HC	GT:AD:AF:DP	1/1:1,228:1.00:229
chr5	66459878	rs1705399	G	C	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	66480004	rs1697144	T	C	9755.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr5	67522722	rs706713	C	T	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:97,88:0.48:185
chr5	67522851	rs706714	A	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr5	67569391	rs2302974	A	C	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:117,95:0.45:212
chr5	67569479	rs2302975	A	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	67575323	rs201581886	ATT	A	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.750;QD=21.06;ReadPosRankSum=-0.084;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr5	67575344	rs16897620	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr5	67575642	rs3815701	A	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr5	67584758	rs1862162	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr5	67587994	rs3730087	C	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr5	68390284	rs337259	C	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:55,71:0.56:126
chr5	68396580	rs12522805	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=-0.524;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	68396764	.	TG	T	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=2.310;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr5	68400583	rs78986159	C	A	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr5	68400594	rs149336330	ATAT	A	858.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr5	68409094	rs164393	A	C	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-0.166;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:34,37:0.52:71
chr5	68411010	rs240809	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr5	68412048	rs34215592	A	AT	962.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.609;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=1.865;QD=15.04;ReadPosRankSum=0.668;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:25,39:0.61:64
chr5	68413042	rs3840519	CT	C	824.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:112,66:0.37:178
chr5	68415932	rs164391	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=1.034;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr5	68417643	rs164578	C	T	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:151,142:0.48:293
chr5	68417755	rs164577	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr5	68419054	rs164572	A	T	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:141,129:0.48:270
chr5	68470559	rs426392	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr5	68470599	rs3087334	C	CATTA	1185.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr5	68471247	rs1128761	G	A	2866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.837;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:136,146:0.52:282
chr5	68473305	rs3087333	A	AT	1360.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:90,79:0.47:169
chr5	68513599	rs2242350	G	T	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr5	68522298	rs12189395	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr5	68531099	rs72767837	G	A	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr5	68531253	rs2972388	C	T	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:69,62:0.47:131
chr5	68551507	rs2291519	T	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr5	68564985	rs59967147	TA	T	659.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=61.03;MQRankSum=1.614;QD=10.00;ReadPosRankSum=0.445;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:19,47:0.71:66
chr5	68572668	rs4077460	C	T	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr5	68581389	rs3890705	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr5	68596068	rs28704183	C	G	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	68602655	.	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-0.172;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	68602746	rs6881767	G	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-0.638;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr5	68609885	rs11749723	G	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=3.028;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr5	68610009	rs28462372	A	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	68616331	rs10471774	C	T	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:228,183:0.45:411
chr5	68667263	.	TCCCC	T	110.86	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.84;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr5	68684839	rs369847314	A	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=1.200;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr5	68688608	rs299080	T	C	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-1.481;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:71,86:0.55:157
chr5	68692375	rs34097088	T	TAA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.250;QD=9.84;ReadPosRankSum=1.631;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr5	68696035	rs142095225	G	GTTTATTTA	512.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=42.73;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	68706252	rs10940223	G	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	68706438	rs6871685	G	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	68715310	rs1185246	C	T	12042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=1314;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=1.538;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:671,627:0.48:1298
chr5	68720419	rs299099	T	G	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.750;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:53,48:0.48:101
chr5	68728544	rs299075	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:73,89:0.55:162
chr5	69325573	.	CT	C	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=4.306;MLEAC=1;MLEAF=0.500;MQ=55.28;MQRankSum=-11.142;QD=0.39;ReadPosRankSum=2.588;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:263,70:0.21:333
chr5	70200991	.	C	CT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.500;MQ=54.05;MQRankSum=-6.734;QD=0.79;ReadPosRankSum=1.428;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:171,40:0.19:211
chr5	70751818	rs3748043	T	G	4743.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:262,245:0.48:507
chr5	70763088	rs7442961	A	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.07;ReadPosRankSum=0.087;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr5	70766415	.	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=3.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.722;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr5	70786726	rs35267960	G	GAC	130.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr5	70797500	.	TAA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=6.043;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=-0.755;QD=2.09;ReadPosRankSum=-0.263;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr5	70800538	rs3761967	G	A	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=1.636;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:62,48:0.44:110
chr5	70806457	rs715748	G	A	4818.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:207,235:0.53:442
chr5	70806649	rs1961760	T	A	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-2.438;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:85,85:0.50:170
chr5	70806711	rs715747	C	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr5	70806958	rs6886336	G	A	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:106,120:0.53:226
chr5	70807991	rs418738	G	A	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=2.516;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr5	70809169	rs1698063	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr5	70811821	rs279322	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr5	70818329	rs34331239	C	CA	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.512;QD=3.75;ReadPosRankSum=3.367;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr5	70834703	rs276591	A	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr5	70834833	rs276590	G	A	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.702;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr5	70837260	.	G	GT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.585;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr5	70837295	rs6453014	A	C	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr5	70840233	rs182190	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr5	70840433	rs279290	A	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr5	70849021	rs469039	G	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr5	70922616	rs12516456	G	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr5	70927856	rs277980	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr5	70928083	rs277981	C	T	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr5	70931883	rs1553314	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.83;ReadPosRankSum=0.470;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr5	70932002	rs7444180	G	A	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.559;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:65,47:0.42:112
chr5	70932170	rs7444232	G	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	70945075	rs10064079	A	G	2826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.752;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:105,143:0.58:248
chr5	70948385	rs6888301	T	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr5	70948654	rs2242372	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr5	70952506	rs7443786	A	G	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,55:0.50:109
chr5	71016462	rs5868607	CA	C	1226.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:112,43:0.28:155
chr5	71403273	rs3112401	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	71403306	rs3112402	T	A	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	71411718	rs1531312	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr5	71412373	rs1466343	A	G	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.984;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:91,49:0.35:140
chr5	71465361	rs3112399	T	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	71488904	rs7736611	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr5	71489169	rs70999269	C	CT	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.109;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr5	71490962	rs1866374	A	G	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:100,122:0.55:222
chr5	71495041	rs3805452	T	C	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:158,169:0.52:327
chr5	71519664	rs3209157	C	T	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:80,58:0.42:138
chr5	71522125	rs9293821	A	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr5	71524163	rs10942927	A	T	7240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-0.335;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:379,380:0.50:759
chr5	71528110	rs3213894	T	C	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.686;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr5	71533976	rs191187480	A	T	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.168;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:38,46:0.55:84
chr5	71739546	rs4267851	C	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr5	71743024	rs10043295	G	C	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:100,74:0.43:174
chr5	71756102	rs7721922	G	A	5200.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:308,268:0.47:576
chr5	72112421	rs34648	T	C	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.47;ReadPosRankSum=1.143;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:20,33:0.62:53
chr5	72112430	rs34647	C	G	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=-1.988;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:19,37:0.66:56
chr5	72144209	rs34652	C	T	6220.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:440,331:0.43:771
chr5	72147269	rs34655	A	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	72151858	rs34660	T	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	72168584	.	C	CT	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=0.37;ReadPosRankSum=0.500;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:331,69:0.17:400
chr5	72174432	rs266435	C	G	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.41;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	72174553	rs266436	G	A	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	72182857	rs4704045	A	G	198.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr5	72182940	.	T	C	878.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr5	72183055	.	CCTAAGTCCAGTTTGAATTATGTAAGTTGGCTTCTTACTACTATTAGGTACTAATAAGGCTAGGCTACTTTAAGG	C	866.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.26;ReadPosRankSum=0.500;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr5	72184098	rs17606	C	T	7008.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.39;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr5	72185591	.	CT	C	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.023;QD=3.76;ReadPosRankSum=0.921;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:43,34:0.44:77
chr5	72187600	rs150305839	T	C	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	72204773	.	CA	C	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.446;QD=1.47;ReadPosRankSum=0.294;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:86,33:0.28:119
chr5	72252034	rs140511986	G	GGGC	4708.73	.	AC=1;AF=0.500;AN=2;DB;DP=322;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:124,123:0.50:247
chr5	72347090	rs7712673	A	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=1.870;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr5	72347223	rs7712838	A	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr5	72350290	rs62362200	A	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr5	72351905	rs57213367	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr5	72364673	rs470926	A	G	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-1.054;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:41,39:0.49:80
chr5	72370745	rs7732230	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr5	72370798	.	CTGT	C	151.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	72378703	rs11313621	AT	A	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=1.755;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr5	72419267	rs638333	T	C	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:169,132:0.44:301
chr5	72419410	rs7731777	A	G	12925.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr5	72419456	rs637450	C	G	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:374,210:0.36:584
chr5	72419617	rs636926	C	A	6110.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:353,319:0.47:672
chr5	72742882	rs2972191	T	C	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=-0.386;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:37,28:0.43:65
chr5	72743299	.	G	GGC	2879.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.031;QD=38.92;ReadPosRankSum=0.662;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:4,70:0.95:74
chr5	72798502	rs200370518	GTT	G,GT	1690.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.956;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.281;QD=18.58;ReadPosRankSum=1.735;SOR=1.281;set=HC	GT:AD:AF:DP	1/2:4,57,30:0.63,0.33:91
chr5	72800408	rs703882	G	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr5	72800863	rs59856963	C	CT	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.183;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:43,26:0.38:69
chr5	72850282	rs343104	A	G	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=1.917;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:29,42:0.59:71
chr5	72861459	rs168222	G	A	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr5	72865307	rs347234	C	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr5	72868546	rs1220634	A	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr5	72872766	rs1220622	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.776;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr5	72874907	rs343122	A	C	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:158,168:0.52:326
chr5	72980837	rs16870681	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr5	72980869	rs10755296	G	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr5	73069581	rs4704097	A	G	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	73072354	rs7714670	T	C	2737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=2.790;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:109,139:0.56:248
chr5	73072504	rs10473959	A	C	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:157,151:0.49:308
chr5	73076457	rs11949860	G	A	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:106,102:0.49:208
chr5	73076474	rs35525194	GT	G	1293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.946;QD=6.50;ReadPosRankSum=-1.471;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:104,95:0.48:199
chr5	73076511	rs6453022	C	A	1912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=0.158;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:92,95:0.51:187
chr5	73090089	rs12653477	T	G	1571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.355;QD=10.48;ReadPosRankSum=0.580;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:74,76:0.51:150
chr5	73090165	rs10683146	A	AGTT	11955.73	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.76;QD=43.79;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	73090261	rs7716253	T	C	4355.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	73091126	rs2973549	T	A	799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.160;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:39,44:0.53:83
chr5	73091149	rs73118524	C	T	1563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=-0.858;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:70,77:0.52:147
chr5	73091228	rs2973548	C	T	2277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-0.880;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:114,120:0.51:234
chr5	73144845	rs2973568	A	G	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	73153389	.	TACACAC	T,TAC	4618.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=119;set=Intersection	GT:AF:DP	1/2:0.20,0.80:114
chr5	73160730	rs1014550	G	A	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	73160775	rs1979551	A	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr5	73163831	rs2931423	C	T	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:104,105:0.50:209
chr5	73163861	rs2931422	C	T	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	73163965	rs2973558	C	A	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:95,75:0.44:170
chr5	73178550	rs2973528	T	G	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	73189145	rs2973529	G	A	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,59:0.53:112
chr5	73190119	rs2973530	T	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	73197185	rs434065	A	C	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=1.174;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:48,55:0.53:103
chr5	73197200	rs384927	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	73205382	rs200976886	A	G	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:177,145:0.45:322
chr5	73205463	rs17634853	G	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:57,50:0.47:107
chr5	73205697	rs78992879	C	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr5	73205717	rs17634865	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr5	73207372	rs1478453	T	A	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:99,94:0.49:193
chr5	73930442	rs300240	C	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	73930751	rs300239	C	T	11046.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr5	73931246	rs442425	T	C	27965.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=1116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=0.149;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:2,1103:1.00:1105
chr5	73932315	rs9176	T	C	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	73981270	rs820878	T	C	41930.77	.	AC=2;AF=1.00;AN=2;DB;DP=1633;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,1600:1.00:1600
chr5	73985107	rs41271747	T	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	73992406	rs1696979	T	G	61.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	73992609	rs1665894	G	A	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	74009327	rs17561000	A	G	2387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=0.231;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:137,123:0.47:260
chr5	74028752	rs10572369	GACACAC	G,GACAC	1411.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.619;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.385;QD=30.69;ReadPosRankSum=-0.211;SOR=3.014;set=HC	GT:AD:AF:DP	1/2:3,34,9:0.74,0.20:46
chr5	74097381	rs73116717	A	C	3280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-2.015;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:204,174:0.46:378
chr5	74134627	rs74432162	G	A	232.79	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr5	74324437	rs3811986	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr5	74324451	rs35535831	C	T	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr5	74324548	rs3811987	G	A	2155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-1.584;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:126,111:0.47:237
chr5	74324902	rs4704166	C	T	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:125,132:0.51:257
chr5	74364300	rs10942729	G	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.147;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr5	74376309	rs4447963	A	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	74376571	rs4345300	C	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.972;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:33,31:0.48:64
chr5	74387317	rs10462512	C	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr5	74400386	rs961098	G	C	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:178,197:0.53:375
chr5	74433839	rs5868765	G	GA	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.605;QD=12.02;ReadPosRankSum=-1.551;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr5	74442410	rs1422699	G	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr5	74442920	rs6888707	A	G	3384.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:180,171:0.49:351
chr5	74443132	rs1422698	C	T	3326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.255;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:163,171:0.51:334
chr5	74450278	rs7704104	T	A	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:62,79:0.56:141
chr5	74484275	rs10050948	C	T	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.125;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:21,35:0.62:56
chr5	74491715	rs10563854	TTCA	T	6334.73	.	AC=1;AF=0.500;AN=2;DB;DP=360;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:164,167:0.50:331
chr5	74506658	rs2219745	C	T	817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=1.345;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:26,42:0.62:68
chr5	74518317	.	T	TA	31	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=9;HapScore=2;MGOF=0;MMLQ=21;MQ=60.0;NF=0;NR=3;PP=31;QD=15.0;SC=TCATTTCTTCTAAAAAAAAAC;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=74518325;WS=74518307;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr5	74526489	rs11295265	GT	G	2827.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=-0.477;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:103,100:0.49:203
chr5	74639576	rs3064877	C	CAA	208.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	74641560	rs10515198	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr5	74646878	rs11742194	C	T	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:74,56:0.43:130
chr5	74651084	rs3846662	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr5	74655726	rs3846663	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr5	74656175	rs5909	G	A	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:199,136:0.41:335
chr5	74877803	rs5744672	T	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=1.536;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr5	75427518	rs1423099	C	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	75427935	rs10070440	G	A	10537.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr5	75469778	rs113058744	C	T	4960.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:337,256:0.43:593
chr5	75469796	rs147818448	G	A	4161.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:362,227:0.39:589
chr5	75469885	rs62622369	C	T	3237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.752;QD=7.38;ReadPosRankSum=-0.828;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:266,173:0.39:439
chr5	75470086	rs10805899	T	C	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr5	75591710	rs2270927	C	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr5	75594743	rs31244	G	A	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:112,73:0.39:185
chr5	75597494	rs246816	A	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	75648846	rs246792	T	C	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,74:0.53:139
chr5	75648938	rs142457579	TA	T	694.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:62,54:0.47:116
chr5	75648940	rs66963762	AT	A	513.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.095;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:79,45:0.36:124
chr5	75757556	rs10045155	C	T	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	75904811	rs3822529	C	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr5	75923141	rs2455221	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr5	75923285	rs2431351	C	T	2836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.074;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:192,152:0.44:344
chr5	75923294	rs2431352	T	G	12539.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.80;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr5	75923307	rs2909888	A	G	9708.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr5	75923393	rs2431353	T	C	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:122,103:0.46:225
chr5	75923459	rs2455222	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr5	75924469	rs3822541	G	T	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:235,176:0.43:411
chr5	75924472	rs2455225	A	G	4773.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:180,239:0.57:419
chr5	75927606	rs3797409	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.91;ReadPosRankSum=1.543;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr5	75927635	rs3797410	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr5	75927938	rs441157	A	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr5	75927954	rs3797412	A	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr5	75932869	rs2910819	C	T	3094.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:129,155:0.55:284
chr5	75932965	rs2455230	G	C	4933.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:246,251:0.51:497
chr5	75933097	rs2937415	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr5	75936944	rs457821	G	A	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:66,84:0.56:150
chr5	75949844	rs457127	C	A	50.81	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr5	75950707	rs465731	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr5	75950997	rs459846	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr5	75960818	rs11449450	T	TA	173.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr5	75960825	rs253092	G	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	75960865	rs253093	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	75961154	rs253094	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	75964462	rs3815778	T	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr5	75964702	rs3764935	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	75967514	.	GAA	G	410.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=-1.406;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr5	75967517	.	A	G	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.959;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr5	75989044	rs10514070	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr5	75998516	rs145804823	A	AGAAAACCAGTGCCAGCCTTATTTGCC	1320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=17.878;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.068;QD=17.38;ReadPosRankSum=-0.677;SOR=2.441;set=HC	GT:AD:AF:DP	0/1:39,37:0.49:76
chr5	76003254	rs463188	A	T	67.03	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	76003258	rs464494	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	76028124	rs168753	A	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=1.926;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:28,29:0.51:57
chr5	76114963	rs1529505	C	T	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=0.689;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:24,38:0.61:62
chr5	76115172	rs686868	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:89,77:0.46:166
chr5	76128521	rs616235	G	A	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr5	76129053	rs631465	T	C	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	76249536	rs1715771	C	G	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:88,94:0.52:182
chr5	76259350	rs7728378	T	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-0.057;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr5	76326885	rs2278241	G	A	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:55,50:0.48:105
chr5	76335623	rs35359101	A	C	86.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.48;ReadPosRankSum=-0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr5	76349951	rs145435120	T	C	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:222,166:0.43:388
chr5	76359024	rs34400049	C	A	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.005;QD=9.64;ReadPosRankSum=-0.764;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:105,106:0.50:211
chr5	76373240	rs2303713	A	G	1332.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=4.761;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:47,35:0.43:82
chr5	76373241	rs2303714	G	C	1332.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=4.171;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:47,37:0.44:84
chr5	76607627	rs11413850	C	CT	254.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr5	76607930	rs11395504	C	CT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.805;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr5	76621612	rs4133658	A	T	272.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	76627436	rs9687030	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	76627468	rs73767372	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr5	76633297	rs7717046	G	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	76640845	rs11742730	C	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr5	76645529	rs2306343	G	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	76703374	rs3101866	A	G	6108.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	76704849	rs186753	T	C	6323.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	76708987	rs335614	A	G	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	76709249	rs335615	A	T	165.56	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr5	76709268	rs335616	A	G	408.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	76709269	rs2279094	A	G	102.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.389;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.56;ReadPosRankSum=-0.782;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	76722443	rs40594	G	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	76729193	rs462581	G	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	76733379	rs919224	C	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	76734084	rs33204	C	T	8006.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr5	76736907	rs2560076	G	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	76747087	rs335609	T	C	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	76758803	rs426381	T	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	76760495	rs410620	T	C	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	76760657	rs11433376	G	GA	5840.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.24;ReadPosRankSum=0.126;SOR=0.682;set=HC	GT:AD:AF:DP	1/1:10,265:0.96:275
chr5	76785405	rs72593800	T	TG	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=3.319;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:29,62:0.68:91
chr5	76787919	rs42764	C	G	18803.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr5	76916335	rs5868876	G	GC	3739.73	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:139,123:0.47:262
chr5	76926578	rs13357072	T	C	11351.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr5	76926651	rs62362480	A	C	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:186,162:0.47:348
chr5	77004046	rs71608120	TTATTTATGATA	T	76.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr5	77425028	rs6453373	A	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:73,65:0.47:138
chr5	77512158	rs9293731	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr5	77524068	rs368175252	T	TA	1355.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:81,83:0.51:164
chr5	77524091	rs4499809	A	G	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,55:0.47:117
chr5	77563263	rs10065892	G	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr5	77745853	rs66744502	C	CA	4377.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=37.74;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	77745862	rs200104831	G	GT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-1.384;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:69,20:0.22:89
chr5	77755035	rs6453391	T	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	77784738	rs2241566	A	G	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr5	78135201	rs25413	C	T	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	78251347	rs6870443	A	G	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	78265092	rs918581	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	78265096	rs918580	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	78317413	rs731124	C	T	9923.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr5	78324352	rs1805074	A	G	9686.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.36;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr5	78324482	rs2303129	T	C	5522.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	78326750	rs1805073	G	C	8375.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr5	78326922	rs140713637	CGGGCAGCGGGGAGTG	C	2186.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	78328560	rs1805072	G	A	23355.77	.	AC=2;AF=1.00;AN=2;DB;DP=927;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,924:1.00:924
chr5	78373251	rs11375024	G	GA	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.76;MQRankSum=2.322;QD=6.02;ReadPosRankSum=-1.847;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:37,33:0.47:70
chr5	78373514	rs7732821	A	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	78416973	rs112263466	CA	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.123;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:47,26:0.36:73
chr5	78421780	rs694290	G	A	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	78421959	rs3733890	G	A	9687.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr5	78573790	rs13182512	A	T	8445.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr5	78573970	rs16876598	T	C	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	78586914	rs10043008	G	T	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	78587135	rs17234734	A	T	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	78596044	rs10514159	T	C	8185.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	78608354	rs35852788	CT	C	330.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.761;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.733;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:6,25:0.81:31
chr5	78692529	rs6872497	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.20;ReadPosRankSum=0.247;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr5	78742980	rs6862358	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.730;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr5	78746699	rs13356332	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	78915992	rs3828602	A	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.23;ReadPosRankSum=0.947;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	78936847	.	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.370;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr5	78952744	.	G	T	1376.77	.	AC=1;AF=0.500;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	0/1:77,73:0.49:150
chr5	79024734	rs1541813	A	G	1639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=0.322;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:72,83:0.54:155
chr5	79025157	rs10942901	A	G	2170.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:80,106:0.57:186
chr5	79028472	rs4704585	C	T	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:177,136:0.43:313
chr5	79030045	rs4639193	A	G	4930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-0.748;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:173,232:0.57:405
chr5	79031558	rs62621912	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr5	79041057	rs12514461	A	G	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.433;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:49,73:0.60:122
chr5	79048562	rs1366272	C	T	2623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=1.757;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:141,138:0.49:279
chr5	79054468	rs144578287	CTATG	C	841.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr5	79086649	rs259096	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr5	79086973	rs77117813	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr5	79095417	rs10043986	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:90,54:0.38:144
chr5	79172136	rs265005	A	G	6367.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:279,315:0.53:594
chr5	79282449	rs76184088	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr5	79368016	rs256437	T	C	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	79375575	rs17885983	T	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	79439630	rs12652646	G	A	3577.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:157,179:0.53:336
chr5	79443169	rs7712447	A	G	5493.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	79443198	rs78285752	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:64,60:0.48:124
chr5	79473059	rs11429938	C	CT	2435.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	79498623	rs7723756	A	G	12407.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr5	79499076	rs35653111	C	CAT	262.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	79551867	rs1966470	A	G	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	79616083	rs1862136	G	C	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr5	79617357	rs16876315	T	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	79731608	rs2544599	G	A	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	79733079	rs2544600	T	C	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	79734297	rs259028	T	C	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	79734409	rs259029	G	A	9204.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr5	79735858	rs168939	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	79739685	rs259033	G	A	4495.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	79741018	rs259034	T	A	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	79743821	rs2251759	T	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	79745469	rs249038	A	G	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	79747291	rs249039	A	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	79751332	rs249040	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	79773028	rs166062	T	G	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	79815658	rs369998	T	C	11298.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,440:1.00:440
chr5	79855372	rs32857	A	G	10908.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr5	79855876	rs187262	T	C	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	79950508	rs1105525	C	T	5979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=3.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.66;ReadPosRankSum=2.001;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:203,156:0.43:359
chr5	79950512	rs1105524	A	G	6319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=0.139;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:210,178:0.46:388
chr5	79950781	rs1650697	A	G	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	79966178	rs6151630	G	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr5	79974646	rs836807	T	C	201.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	80021168	rs32951	A	C	1621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.59;ReadPosRankSum=0.958;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:21,40:0.66:61
chr5	80021193	rs245016	C	T	1620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.01;ReadPosRankSum=1.672;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:33,48:0.59:81
chr5	80021445	rs32952	A	C	279.80	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr5	80088461	rs3830224	CAG	C	166.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.79;ReadPosRankSum=-0.674;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr5	80149981	rs184967	A	G	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	80160596	rs3991216	AAATG	A	4802.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=44.06;SOR=1.200;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	80168937	rs26279	G	A	10633.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr5	80382675	.	C	T	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-0.036;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:126,103:0.45:229
chr5	80382806	rs7733625	G	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr5	80388554	rs2592094	C	T	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	80390225	rs505748	C	T	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	80390290	rs498119	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	80409229	rs26422	C	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	80409729	rs10942942	T	C	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	80502736	rs6453542	C	G	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.962;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:65,35:0.35:100
chr5	80503288	rs12653043	C	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr5	80504353	.	CTTTTTTTTTTTTT	C	624.73	.	AC=1;AF=0.500;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.85;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr5	80508071	rs12658249	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr5	80553475	rs148928292	C	CTAGG	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr5	80631511	rs6452399	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr5	80639501	rs76125752	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr5	80640919	rs147835552	TGCACACCGCTGCCACCTCCTC	T	198.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr5	80655709	rs13163821	T	C	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=2.165;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr5	80716163	rs10746	T	G	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=3.413;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:41,39:0.49:80
chr5	80724572	rs3764985	G	A	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-1.263;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:38,71:0.65:109
chr5	81354389	rs3734114	T	C	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:245,164:0.40:409
chr5	81474225	rs9293290	A	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr5	81538528	rs12654645	C	T	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=0.323;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr5	81548314	rs41271127	C	T	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:126,101:0.44:227
chr5	81549216	rs1864183	C	T	4762.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:231,242:0.51:473
chr5	81549240	rs1864182	C	A	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:212,217:0.51:429
chr5	81549280	rs1864181	C	T	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:121,114:0.49:235
chr5	81572184	rs226200	G	C	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	81572464	rs226199	G	C	183.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	81573992	rs226198	C	T	9185.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.979;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.70;ReadPosRankSum=-1.710;SOR=1.404;set=HC	GT:AD:AF:DP	1/1:2,342:0.99:344
chr5	81601075	rs62365440	G	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	81601142	.	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.024;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr5	82135819	rs139917914	T	TA	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=1.148;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr5	82135829	.	T	TC	406.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.976;QD=5.21;ReadPosRankSum=0.841;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:37,41:0.53:78
chr5	82135830	.	C	CCA	449.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-0.750;QD=5.77;ReadPosRankSum=-0.734;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:41,37:0.47:78
chr5	82136064	rs113309601	T	TTCTTC	2480.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	82786194	rs12332199	T	C	4011.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:228,213:0.48:441
chr5	82789647	rs4470745	A	G	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:156,148:0.49:304
chr5	82868173	rs309585	G	A	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.161;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	82875800	rs308365	C	T	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	83239132	.	G	GAA	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=0.699;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr5	83360520	rs2269287	C	T	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:154,100:0.39:254
chr5	83433000	.	C	CAT	2932	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=26;MQ=59.73;NF=24;NR=16;PP=2932;QD=20;SC=TGTGTGTATACATACACACAC;SbPval=0.67;Source=Platypus;TC=108;TCF=62;TCR=46;TR=40;WE=83433014;WS=83432990;set=Platypus	GT:AD:AF:DP	0/1:68,40:0.37:108
chr5	83433002	.	TAC	TACAC,T	860.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=252;set=Intersection	GT:AF:DP	0/1:0.31:219
chr5	83433004	rs350490	C	T	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=7.25;ReadPosRankSum=0.327;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:139,93:0.40:232
chr5	85582712	rs2964837	T	C	3698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-8.634;QD=9.61;ReadPosRankSum=0.461;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:196,189:0.49:385
chr5	85586579	rs10066606	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr5	85586584	rs10038100	C	T	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr5	86667856	rs35014912	G	GA	889.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.77;ReadPosRankSum=0.454;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr5	86669964	rs377722838	AT	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=0.947;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr5	86670546	rs200643915	G	GT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.234;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr5	86679495	.	T	TA	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.685;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr5	87497977	rs358289	C	T	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	87498027	rs3099436	G	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=0.114;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:14,22:0.61:36
chr5	87498069	rs3098676	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.485;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr5	87498849	rs3097146	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr5	87502324	.	G	GA	77.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.096;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr5	87502325	rs357515	G	A	972.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.48;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	87503087	rs34534189	GACT	G	623.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr5	87963272	rs5869431	G	GA	1958.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:44,57:0.56:101
chr5	87968864	rs6882046	A	G	3243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.140;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:152,168:0.53:320
chr5	87968912	.	CA	C	586.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DP=345;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=1.220;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:194,103:0.35:297
chr5	87968953	rs3814424	C	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:101,112:0.53:213
chr5	88018388	.	G	GA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.935;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:94,25:0.21:119
chr5	88025845	rs34297769	CA	C	160.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr5	89705752	rs11315430	GC	G	181.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr5	89769728	rs2162986	T	C	13938.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr5	89769999	rs2115501	G	A	4960.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:235,250:0.52:485
chr5	89781594	rs2115500	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	89821125	rs13361350	A	G	2456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.658;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:106,155:0.59:261
chr5	89909972	.	GAAAA	G	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.67;ReadPosRankSum=-0.112;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr5	89924976	rs2366771	C	A	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	89938587	rs2366773	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	89940739	rs35654587	AT	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.90;ReadPosRankSum=2.109;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr5	89943571	rs2366777	G	T	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	89954184	rs11958484	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.95;ReadPosRankSum=-0.524;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	89968626	rs1028191	A	T	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	89979380	rs4916683	T	C	1518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=0.023;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:60,76:0.56:136
chr5	89979589	rs4916684	G	A	8662.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr5	89979698	rs4916685	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:87,104:0.54:191
chr5	89985882	rs10037067	A	G	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:47,60:0.56:107
chr5	89986963	rs17621985	T	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:49,57:0.54:106
chr5	89988412	rs10040165	G	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.849;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,33:0.54:61
chr5	89988504	rs2366926	A	G	3342.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:134,160:0.54:294
chr5	89989779	rs16876822	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,43:0.39:110
chr5	89990324	rs1878878	A	G	15263.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr5	89990545	rs10068473	C	A	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:85,104:0.55:189
chr5	89993045	rs10942604	T	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr5	90001988	rs1160121	G	T	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	90002220	rs60522638	C	CT	1736.06	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:20,100:0.83:120
chr5	90007196	rs7732169	C	T	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	90012379	rs13157270	G	A	4071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=3.331;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:237,213:0.47:450
chr5	90012614	rs10067181	A	T	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	90015792	rs6881412	C	T	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	90016129	rs6452906	A	G	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	90020868	rs7723259	A	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	90020923	rs16869042	T	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr5	90021499	rs4916815	G	T	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.82;ReadPosRankSum=-1.302;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr5	90024735	rs2366928	G	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	90040890	rs41311343	T	C	5047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=0.400;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:326,272:0.45:598
chr5	90052263	rs34894132	T	TC	3129.73	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:91,120:0.57:211
chr5	90052372	rs2438349	C	T	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:112,119:0.52:231
chr5	90053056	rs2443065	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr5	90059001	rs881289	T	A	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	90059406	rs2049009	A	G	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	90079820	rs17554631	A	G	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:59,101:0.63:160
chr5	90107108	rs2438374	A	G	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	90119324	rs2438378	G	A	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	90151589	rs2247870	G	A	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr5	90151795	rs140039800	C	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr5	90398269	rs1986718	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr5	90449031	rs7726023	T	C	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:124,157:0.56:281
chr5	90669400	rs6452952	A	T	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	93294451	.	C	CA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-0.206;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:98,20:0.17:118
chr5	93388777	rs148770534	T	TATAG	273.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr5	93410244	rs7732578	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	93722050	rs29913	G	T	1594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=1.512;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:63,81:0.56:144
chr5	93731985	rs308207	A	G	12289.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,476:1.00:476
chr5	93732334	rs308206	C	T	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	93753017	rs29910	C	T	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.310;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:61,69:0.53:130
chr5	93788638	rs17326194	A	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr5	93872945	rs6556847	T	C	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-1.539;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:31,26:0.46:57
chr5	93987532	rs6891545	C	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=1.067;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr5	93990099	rs11427225	G	GA	114.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.730;QD=8.83;ReadPosRankSum=0.254;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr5	93998112	rs10684163	G	GTTA	1573.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chr5	94006023	rs7709494	T	C	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-0.466;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr5	94014800	rs1549179	T	A	40.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr5	94022491	rs113089557	TTTAG	T	606.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=18.479;MLEAC=1;MLEAF=0.500;MQ=61.21;MQRankSum=-0.809;QD=15.17;ReadPosRankSum=1.566;SOR=4.287;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr5	94043353	rs7735924	G	T	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:82,96:0.54:178
chr5	94043430	rs7737187	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr5	94044229	.	T	C	503.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr5	94046387	rs306573	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	94050447	rs2638	C	T	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:189,141:0.43:330
chr5	94050487	rs2636	T	A	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:255,189:0.43:444
chr5	94114594	rs255372	T	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	94202929	rs61529027	T	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:74,74:0.50:148
chr5	94203211	rs159034	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr5	94230358	rs9885412	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:59,40:0.40:99
chr5	94230572	.	C	CTTT	118	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=15;HapScore=4;MGOF=15;MMLQ=20;MQ=60.31;NF=0;NR=12;PP=118;QD=10.0833333333;SC=CAGCAAGTGGCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=22;TCF=0;TCR=22;TR=12;WE=94230582;WS=94230562;set=Platypus	GT:AD:AF:DP	0/1:10,12:0.55:22
chr5	94259621	rs34187028	C	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=2.284;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chr5	94278129	rs293035	T	C	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:68,72:0.51:140
chr5	94278154	rs159351	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chr5	94289131	rs293045	T	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	94353024	rs12658252	T	C	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:138,118:0.46:256
chr5	94619545	rs5869672	G	GC	3941.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	94654187	rs255983	C	T	10305.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr5	94670706	rs148964669	T	TTTTCCTTCCTTCCTTCCTTTCC	737.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.18;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	94728631	rs2546097	G	T	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr5	94741741	rs253714	C	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr5	94741837	rs253715	A	G	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:110,94:0.46:204
chr5	94741973	rs253716	T	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr5	94756261	rs62365043	C	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr5	94756278	rs62365044	G	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr5	94772540	rs6878669	C	T	10565.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr5	94782516	rs200792409	C	CT	392.94	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr5	94784397	.	AT	A	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.363;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr5	94800234	rs7534	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr5	94800503	rs9885192	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr5	94800547	rs9885310	G	A	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr5	94805685	.	C	CTT	87	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=15;HapScore=3;MGOF=10;MMLQ=27;MQ=59.44;NF=0;NR=9;PP=87;QD=10.2222222222;SC=CAATTCAATTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=26;TCF=0;TCR=26;TR=9;WE=94805693;WS=94805675;set=Platypus	GT:AD:AF:DP	0/1:17,9:0.35:26
chr5	94820639	.	G	A	24	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=24;QD=29.3856062736;SC=TTACCGTTGGGCTTATCATCC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=94820647;WS=94820629;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr5	94826655	rs2303650	C	A	5298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=1.252;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:261,274:0.51:535
chr5	94852180	rs6861524	G	A	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr5	94859602	rs74760653	T	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr5	94861118	rs17084873	G	C	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:88,99:0.53:187
chr5	94903527	rs73777227	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr5	94916765	rs17084910	G	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr5	94927426	rs58373522	T	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr5	94956345	rs7733295	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr5	95011426	rs2548125	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr5	95067936	rs41276255	C	T	2366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-2.311;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:71,115:0.62:186
chr5	95084131	rs34896	G	A	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:173,144:0.45:317
chr5	95091194	rs34898	C	T	12928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.562;QD=17.17;ReadPosRankSum=1.868;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:414,339:0.45:753
chr5	95091201	rs34899	A	G	13165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=803;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.550;QD=16.60;ReadPosRankSum=1.378;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:433,360:0.45:793
chr5	95119408	rs888808	T	C	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,205:1.00:206
chr5	95124328	rs3822753	T	G	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr5	95152313	rs4561	A	G	3974.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=-0.056;QD=24.54;ReadPosRankSum=-0.888;SOR=0.350;set=HC	GT:AD:AF:DP	1/1:1,161:0.99:162
chr5	95152493	rs955688	T	A	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	95192736	.	CTTT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=11.957;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.473;QD=2.29;ReadPosRankSum=3.033;SOR=3.702;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr5	95194571	rs13168014	T	C	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:157,168:0.52:325
chr5	95194617	rs139590962	C	G	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=2.532;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:147,114:0.44:261
chr5	95414786	rs5869706	T	TTAAAA	1761.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	95728898	rs6235	C	G	15114.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,573:1.00:573
chr5	95728974	rs6234	G	C	12504.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr5	95747963	rs35364611	TCTC	T	5940.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	95761432	rs11310306	TA	T	900.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.667;QD=8.83;ReadPosRankSum=1.667;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:22,80:0.78:102
chr5	95768530	rs725522	G	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr5	95865500	rs13186522	T	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	95865526	rs13161802	G	A	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	95998357	rs146973537	G	GGCAGGTGGCT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=1.423;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr5	96031569	rs9667	A	G	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-1.700;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:79,80:0.50:159
chr5	96064715	rs28042	A	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr5	96066652	rs151904	C	T	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	96071780	rs13183352	A	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr5	96076487	rs7724759	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:106,88:0.45:194
chr5	96078309	rs26503	G	A	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	96079387	rs26505	C	T	2646.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:105,134:0.56:239
chr5	96079402	rs26506	C	T	6362.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr5	96086334	rs754615	G	C	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:119,124:0.51:243
chr5	96089658	rs27583	G	A	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	96093222	rs27654	G	A	4138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-2.673;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:210,210:0.50:420
chr5	96093391	.	G	GT	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.048;QD=4.30;ReadPosRankSum=1.448;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr5	96093441	rs27969	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr5	96097895	rs27980	T	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr5	96098214	rs27582	G	A	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=1.814;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:23,35:0.60:58
chr5	96101066	rs11399505	T	TA	446.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	96101944	rs27524	A	G	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	96101959	rs27525	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr5	96107202	rs27689	G	T	1440.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.624;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=1.450;SOR=1.399;set=HC	GT:AD:AF:DP	1/1:1,57:0.98:58
chr5	96111927	rs142866043	T	TAGCCCATTCATGAAAA	1293.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr5	96112083	rs1065407	T	G	1664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.740;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:85,87:0.51:172
chr5	96116031	rs71978924	AACTC	A	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	96116112	rs35237285	AT	A	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.101;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:61,44:0.42:105
chr5	96116940	rs27042	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr5	96117300	rs27043	G	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	96118852	rs27044	G	C	7120.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr5	96118866	rs17482078	C	T	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:132,105:0.44:237
chr5	96119579	rs70981840	A	ACT	699.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	96121370	rs11386832	T	TA	1165.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	96121406	rs469876	A	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:61,66:0.52:127
chr5	96121524	rs469783	C	T	15490.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:1,594:1.00:595
chr5	96121715	rs469758	C	T	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	96122210	rs10050860	C	T	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.965;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:38,27:0.42:65
chr5	96122260	rs30379	T	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	96122281	rs30380	A	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	96124330	rs30187	T	C	8260.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr5	96124447	rs30186	G	C	9672.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr5	96125910	rs26510	C	T	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	96126197	rs27710	A	G	10225.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr5	96126308	rs27529	A	G	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	96127905	rs27640	T	C	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.185;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	96129512	rs27434	A	G	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	96129535	rs2287987	T	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:124,101:0.45:225
chr5	96130836	rs26618	T	C	4356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.498;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:206,219:0.52:425
chr5	96139066	rs10062964	C	T	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=0.224;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:59,44:0.43:103
chr5	96139250	rs26653	C	G	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,256:0.99:258
chr5	96208889	rs113565163	C	CA	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=6.785;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.632;QD=8.35;ReadPosRankSum=0.730;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:34,42:0.55:76
chr5	96217220	.	T	G	1833.77	.	AC=1;AF=0.500;AN=2;DP=206;set=Intersection	GT:AD:AF:DP	0/1:103,95:0.48:198
chr5	96219738	.	TTATC	T	298	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=26;MQ=60.0;NF=0;NR=6;PP=298;QD=50.3333333333;SC=TAATTTGTTTTTATCTATCTA;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=6;WE=96219749;WS=96219728;set=Platypus	GT:AD:AF:DP	1/0:5,6:0.55:11
chr5	96222627	rs13189819	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr5	96230883	rs371137761	A	ATT	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=-0.378;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr5	96231000	rs2549782	G	T	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:117,101:0.46:218
chr5	96232142	rs2548538	T	A	1877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.108;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:115,101:0.47:216
chr5	96232222	rs2548537	G	C	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-0.729;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:90,54:0.38:144
chr5	96232250	rs34701361	G	GAAA	1356.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:67,38:0.36:105
chr5	96232286	rs2549785	C	T	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr5	96232345	rs56321917	CAT	C	295.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr5	96232402	rs2548536	T	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.40;ReadPosRankSum=1.004;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	96235896	rs2248374	A	G	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:120,120:0.50:240
chr5	96237114	rs187265	C	G	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.746;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:33,32:0.49:65
chr5	96237326	rs2287988	G	A	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:119,94:0.44:213
chr5	96237413	rs171647	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr5	96239294	rs1423568	A	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:56,68:0.55:124
chr5	96244549	rs2549794	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr5	96244585	rs2548527	A	C	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr5	96244638	rs2549795	A	G	3874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=0.501;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:224,201:0.47:425
chr5	96245343	rs2549796	C	T	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-0.218;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:166,103:0.38:269
chr5	96245439	rs1056893	C	T	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:97,86:0.47:183
chr5	96245518	rs2549797	A	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr5	96249115	rs2255546	C	T	3277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=1.328;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:222,177:0.44:399
chr5	96253104	rs1363908	T	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr5	96322419	rs38034	C	T	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:145,138:0.49:283
chr5	96329857	rs27304	G	T	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	96332085	rs3836862	TC	T	3246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=0.279;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:222,140:0.39:362
chr5	96339102	rs3214461	AC	A	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=-0.445;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr5	96339273	rs27613	T	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=1.534;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:46,31:0.40:77
chr5	96341750	rs3839297	T	TTA	137.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	96342077	rs3835054	TA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=2.396;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr5	96363407	rs27300	C	T	2869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.842;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:195,155:0.44:350
chr5	96364063	rs27712	C	T	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:114,97:0.46:211
chr5	96519094	rs3806945	A	G	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	98109828	rs2547973	G	A	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-1.864;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:100,82:0.45:182
chr5	98109838	rs2662263	A	C	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.25;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	98109985	rs2545730	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-1.139;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr5	98110073	rs1828168	A	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	98115828	rs2302983	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,31:0.35:89
chr5	98205326	rs112852027	G	GCA	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr5	98210690	rs7718898	A	C	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr5	98236831	rs7702352	T	C	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-2.342;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:93,51:0.35:144
chr5	101592742	rs174414	T	C	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	101592809	rs261101	T	A	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	101593486	rs398228	C	A	725.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	101593487	rs416734	T	G	725.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	101595831	rs386464	C	T	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	101595885	rs148885155	T	TGA	2566.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:8,114:0.93:122
chr5	101606518	rs33922930	G	GA	1285.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr5	101627027	rs841929	T	C	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	101627414	rs2548726	A	T	282.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	101627435	rs841928	C	G	182.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	101631526	rs3114660	C	G	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	101631592	rs3114659	A	G	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr5	102249546	rs6876278	A	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr5	102282472	rs3776873	T	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr5	102295504	rs2195272	G	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr5	102310166	rs3733939	G	A	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:85,92:0.52:177
chr5	102323123	rs182292574	A	G	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=2.100;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr5	102340782	rs3834262	GATTA	G	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=0.312;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr5	102343408	.	A	G	82.77	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	102345546	rs2230457	A	C	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:123,120:0.49:243
chr5	102355716	rs3215069	CT	C	168.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr5	102360747	rs17296280	A	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.198;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr5	102363858	rs26433	C	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr5	102364542	rs2067133	A	AAT	1224.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr5	102423576	rs468844	A	G	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=34.38;ReadPosRankSum=0.674;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr5	102423579	rs469094	A	C	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.91;ReadPosRankSum=2.968;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr5	102433409	rs34813	G	A	3801.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:224,199:0.47:423
chr5	102456254	rs26523	C	T	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:97,95:0.49:192
chr5	102456304	rs26524	A	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr5	102484797	rs138096296	TAC	T	118.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr5	102488571	rs27896	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr5	102489511	rs34767	T	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-1.441;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr5	102494751	rs257292	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr5	102512447	rs152134	C	G	109.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.32;ReadPosRankSum=-0.210;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr5	102512570	rs11408825	C	CA	2814.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	102520400	rs26821	A	C	3296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.657;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:162,169:0.51:331
chr5	102521896	rs17155121	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.52;ReadPosRankSum=0.842;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr5	102537200	rs154290	T	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr5	102537298	rs17155147	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr5	102537379	rs28025	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr5	102894673	rs34468716	T	C	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:190,196:0.51:386
chr5	103978969	rs33818	T	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	104434339	.	G	GGAAA	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.60;ReadPosRankSum=-0.674;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr5	106722838	rs186744617	A	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr5	107006446	rs35553	T	G	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	107197420	rs61749621	G	A	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:163,196:0.55:359
chr5	107197502	rs34990078	G	A	5534.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:237,273:0.54:510
chr5	107560101	rs2044710	A	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr5	107683989	rs3756573	T	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	107684324	rs1862195	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr5	107703446	rs34546708	CAAG	C	874.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr5	108133758	rs11406674	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.61;ReadPosRankSum=-1.147;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr5	108133967	rs2229085	A	G	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.782;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-1.296;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:55,46:0.46:101
chr5	108203451	rs34195313	G	GT	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.614;QD=3.15;ReadPosRankSum=1.113;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:104,52:0.33:156
chr5	108206968	rs7709144	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	108290403	.	G	GT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.837;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=8.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=1.275;SOR=0.161;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr5	108386985	rs2416195	A	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr5	108387229	rs113844089	AG	A	5018.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=1.057;QD=13.42;ReadPosRankSum=-1.459;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:216,158:0.42:374
chr5	108516629	rs6594349	A	G	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	108679870	rs142828555	T	TTTAA	3671.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	108680647	rs441798	C	A	163.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	108691738	rs2431253	A	T	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	108713970	rs10042721	C	T	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr5	108713982	rs12523186	T	C	9318.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr5	108714298	rs1045706	T	C	14408.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr5	108717157	rs2288531	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	108719151	rs1045704	G	A	8629.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr5	109052015	rs375266771	C	G	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:116,90:0.44:206
chr5	109110537	rs6894260	T	A	3749.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:223,200:0.47:423
chr5	109125416	rs1019446	T	C	32.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.93;ReadPosRankSum=-0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr5	109152873	rs112578884	ATATATGTATATG	A	457.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr5	109156184	rs17489649	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-1.896;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr5	109181682	rs3186988	A	T	6116.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:356,319:0.47:675
chr5	109202725	rs1047004	A	G	3407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=0.525;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:185,168:0.48:353
chr5	109976774	rs112654571	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr5	110082153	rs76877641	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr5	110285747	rs200814733	G	GCATCA	5493.73	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:194,144:0.43:338
chr5	110407507	rs2289276	C	T	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=3.347;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:52,43:0.45:95
chr5	110408705	rs11466741	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:28,54:0.66:82
chr5	110409067	rs2289277	C	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr5	110436450	rs10038177	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr5	110439509	rs11241095	A	G	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=-0.726;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,66:0.73:90
chr5	110443228	rs10043631	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=0.842;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr5	110446091	rs34962120	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr5	110446741	rs13161853	C	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr5	110448752	rs35527062	T	TA	309.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.745;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.566;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:35,20:0.36:55
chr5	110448753	rs33919278	T	TATATA	86.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.459;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=2.098;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr5	110454681	rs17553936	A	G	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:113,104:0.48:217
chr5	110456704	rs13186912	A	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=1.634;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr5	110679657	rs446176	C	G	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr5	110710360	rs306067	G	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr5	110710699	rs5870446	A	AG	2182.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:53,78:0.60:131
chr5	110712491	rs306129	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr5	110712773	rs3797754	C	T	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-0.858;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr5	110730557	rs523389	C	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr5	110782634	rs34007984	T	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr5	110784822	rs2116824	A	G	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	110819753	rs25925	G	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	111013858	rs26042	G	A	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:61,61:0.50:122
chr5	111479750	rs62372418	T	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr5	111481600	rs56071312	A	T	1855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=1.266;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:111,97:0.47:208
chr5	111481696	rs17134155	C	T	2621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.826;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:140,134:0.49:274
chr5	111481737	rs17134156	A	T	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:118,104:0.47:222
chr5	111494090	rs181314437	G	C	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:69,55:0.44:124
chr5	111494103	rs2114990	A	C	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:74,59:0.44:133
chr5	111496800	rs151031117	TG	T	2314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.029;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:107,86:0.45:193
chr5	111497328	rs73787785	T	A	7308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-0.718;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:286,198:0.41:484
chr5	111497328	.	TTC	ATA	2443	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=23;MQ=60.0;NF=39;NR=46;PP=2443;QD=29.3702102925;SC=GCTTTTACGTTTCCACGCGTG;SbPval=0.55;Source=Platypus;TC=223;TCF=103;TCR=120;TR=85;WE=111497338;WS=111497318;set=Platypus	GT:AD:AF:DP	1/0:138,85:0.38:223
chr5	111497330	rs2290990	C	A	7308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=-0.485;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:287,195:0.40:482
chr5	111500816	rs145708081	C	CTAAAA	1137.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr5	111500822	.	T	TAAA	648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=1.209;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:56,35:0.38:91
chr5	111500824	.	T	C	275	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=2;NR=13;PP=275;QD=20.6514141698;SC=CTCTAAAATATATTTGAAAAA;SbPval=0.92;Source=Platypus;TC=45;TCF=12;TCR=33;TR=15;WE=111500832;WS=111500806;set=Platypus	GT:AD:AF:DP	1/0:30,15:0.33:45
chr5	111500824	rs33929905	T	TAC	649.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.604;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:56,35:0.38:91
chr5	111504479	rs7703522	C	T	5254.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:368,284:0.44:652
chr5	111505885	rs1560052	T	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.72;ReadPosRankSum=-0.747;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr5	111506069	rs10040749	G	A	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:112,125:0.53:237
chr5	111506712	rs17266727	T	G	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=1.031;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:64,43:0.40:107
chr5	111506751	rs17266771	T	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr5	111519740	rs1560058	T	C	2780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-2.714;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:147,144:0.49:291
chr5	111519881	rs74474882	G	A	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:128,87:0.40:215
chr5	111530284	rs7719346	A	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr5	111541212	rs182050710	A	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr5	111545670	rs890757	C	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr5	111595745	rs28620667	C	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr5	111611076	rs12521830	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr5	111755619	rs61730663	G	A	4712.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:227,228:0.50:455
chr5	112162854	rs2229992	T	C	3096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=-0.572;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:146,163:0.53:309
chr5	112164561	rs351771	G	A	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=-3.239;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:54,37:0.41:91
chr5	112175770	rs41115	G	A	5011.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:219,251:0.53:470
chr5	112176325	rs42427	G	A	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:89,97:0.52:186
chr5	112176526	.	G	T	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511;ClippingRankSum=0.000;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.827;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:237,70:0.23:307
chr5	112176559	rs866006	T	G	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:151,156:0.51:307
chr5	112176756	rs459552	T	A	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	112177171	rs465899	G	A	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:153,154:0.50:307
chr5	112178781	rs141010008	C	T	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:219,201:0.48:420
chr5	112196949	rs460137	A	C	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:38,73:0.66:111
chr5	112197986	rs431287	A	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=0.100;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr5	112198015	rs372492	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.873;QD=13.15;ReadPosRankSum=0.085;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr5	112198071	rs112093457	AAGG	A	1628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.746;QD=19.16;ReadPosRankSum=3.827;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:42,43:0.51:85
chr5	112200098	rs351767	A	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	112217636	rs111457700	GT	G	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=1.783;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr5	112217737	rs35726351	G	A	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-1.056;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:22,41:0.65:63
chr5	112222694	rs712662	C	G	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:59,68:0.54:127
chr5	112227799	rs712665	A	G	3361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=2.075;QD=9.09;ReadPosRankSum=2.444;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:200,170:0.46:370
chr5	112227939	rs712666	T	C	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:135,139:0.51:274
chr5	112228667	rs430665	G	A	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:160,95:0.37:255
chr5	112228765	rs459102	C	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.226;QD=7.39;ReadPosRankSum=-0.039;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr5	112238039	rs153546	A	C	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:128,95:0.43:223
chr5	112256814	rs149190	A	G	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:109,102:0.48:211
chr5	112257242	rs33570	G	C	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	112257366	rs153557	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=2.515;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr5	112257908	rs153556	T	C	5418.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:347,291:0.46:638
chr5	112312528	rs33556	T	C	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:211,172:0.45:383
chr5	112312676	rs33555	T	C	23928.77	.	AC=2;AF=1.00;AN=2;DB;DP=908;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,900:1.00:900
chr5	112312736	rs33554	G	C	12500.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr5	112321488	rs33543	A	G	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.146;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:44,42:0.49:86
chr5	112328267	rs3733968	C	T	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-1.793;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr5	112328377	rs3733969	A	G	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	112339578	rs115463767	G	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr5	112343544	rs2052484	G	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	112343878	rs115903638	T	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr5	112346431	rs58980024	TG	T	181.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=5.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.395;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:40,21:0.34:61
chr5	112346432	rs61417979	GTT	G	217.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.399;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr5	112349070	rs9326869	T	C	8234.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr5	112364945	rs1363333	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=0.180;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr5	112379083	rs4627978	A	G	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	112379095	rs4277906	T	C	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	112379289	rs2227948	G	A	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:268,226:0.46:494
chr5	112379434	rs4705755	T	A	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:72,79:0.52:151
chr5	112384802	rs6594664	G	A	7818.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr5	112385004	rs7726296	CA	GC	3582.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;JOINED;set=Intersection	GT:AD:AF:DP	0/1:164,100:0.38:264
chr5	112385035	rs7708603	T	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:117,71:0.38:188
chr5	112389747	rs4705536	C	G	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	112389802	rs79203374	G	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr5	112399791	rs2227947	G	A	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:215,174:0.45:389
chr5	112399934	rs10477486	C	G	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr5	112406702	rs6888031	T	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-1.820;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr5	112406718	rs4705771	A	G	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.03;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	112406785	rs149928825	G	GCCTCGCGCTGTCTT	1842.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.335;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-1.103;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:82,49:0.37:131
chr5	112406862	rs2227950	G	A	1177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.083;QD=8.60;ReadPosRankSum=1.714;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:73,64:0.47:137
chr5	112439941	rs6594681	T	C	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	112440142	rs6869399	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr5	112479004	rs2227949	T	C	8936.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr5	112487137	rs1947026	A	C	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:132,130:0.50:262
chr5	112629887	rs485210	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr5	112676191	rs10900684	A	G	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:80,89:0.53:169
chr5	112720648	rs17327526	C	A	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:66,51:0.44:117
chr5	112823998	rs348943	C	T	10032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.780;QD=10.19;ReadPosRankSum=-0.267;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:477,508:0.52:985
chr5	112824039	rs348942	T	C	17769.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=27.05;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,657:1.00:657
chr5	112824048	.	T	TGCC	3824.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=593;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=3.606;QD=8.94;ReadPosRankSum=1.435;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:228,200:0.47:428
chr5	112849801	rs1862315	A	C	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:130,107:0.45:237
chr5	112849823	rs2416281	C	T	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:92,78:0.46:170
chr5	112851109	rs1820057	A	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr5	112851121	rs1035408	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr5	112853189	rs1833678	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr5	112868693	rs6594732	C	A	2129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.324;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:117,112:0.49:229
chr5	112874987	rs4334877	C	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.084;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr5	112876889	rs200804870	ATT	A	933.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=-1.476;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,49:0.63:78
chr5	112884197	rs4444963	C	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr5	112884380	rs6889574	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,63:0.54:116
chr5	112884594	rs6889501	A	G	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=2.579;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:89,100:0.53:189
chr5	112884728	rs4639215	G	A	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=1.354;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:27,37:0.58:64
chr5	112884752	rs6594734	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-1.001;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr5	112888854	rs34053583	CT	C	155.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.791;QD=7.09;ReadPosRankSum=-1.135;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr5	112889065	rs60871281	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr5	112889374	rs10071816	G	A	5386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.876;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:294,276:0.48:570
chr5	112889566	rs34947411	ATCT	A	496.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.292;QD=13.07;ReadPosRankSum=-0.673;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr5	112889608	rs10079758	T	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr5	112899250	rs6886199	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr5	112899300	rs6867181	T	A	122.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.69;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr5	112899300	.	TG	AA	120	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=27;MQ=53.67;NF=0;NR=3;PP=120;QD=57.8226249541;SC=TTTGTCCTCCTGCATGTGTCC;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=3;WE=112899309;WS=112899290;set=Platypus	GT:AD:AF:DP	1/0:1,3:0.75:4
chr5	112899301	rs6886338	G	A	122.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.55;ReadPosRankSum=-0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr5	112899702	rs6886628	A	G	4930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=1.291;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:284,259:0.48:543
chr5	112899876	rs11241214	G	A	4371.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:134,209:0.61:343
chr5	112901494	rs3763139	G	C	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=0.596;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:31,36:0.54:67
chr5	112903585	.	A	AT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.872;QD=1.32;ReadPosRankSum=-1.338;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr5	112917278	rs11748794	T	G	3816.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:173,193:0.53:366
chr5	112919941	rs2288449	G	A	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=2.358;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:53,44:0.45:97
chr5	112926982	rs2303717	A	G	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr5	112927888	.	A	AT	743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=0.126;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:24,28:0.54:52
chr5	112927900	rs73242858	A	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-0.799;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:28,24:0.46:52
chr5	112929013	rs1132528	T	A	1744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=0.083;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:83,89:0.52:172
chr5	113698544	rs40179	G	C	7828.77	.	AC=1;AF=0.500;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	0/1:384,380:0.50:764
chr5	113698631	rs111266015	T	TGCC	4742.73	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:286,247:0.46:533
chr5	113822197	rs72801872	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=-1.104;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr5	113822205	rs12719181	C	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.74;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	113829121	rs1841251	A	G	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.79;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	114462355	rs2974617	C	T	9822.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr5	114462589	rs2921623	A	C	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	114462630	rs2974528	T	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr5	114499149	.	T	A	513.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr5	114604460	rs10079729	C	T	84.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.97;ReadPosRankSum=-0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr5	114611356	rs267295	A	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	114632423	rs3111171	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	115167595	rs3215095	CT	C	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=1.802;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr5	115168264	.	CTTTCTTTTT	C	34	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=6;HapScore=2;MGOF=96;MMLQ=27;MQ=55.16;NF=1;NR=0;PP=34;QD=57.0;SC=GCAGTAATTTCTTTCTTTTTT;SbPval=1.0;Source=Platypus;TC=4;TCF=3;TCR=1;TR=1;WE=115168280;WS=115168254;set=Platypus	GT:AD:AF:DP	0/1:3,1:0.25:4
chr5	115168268	rs4921031	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-0.000;QD=7.68;ReadPosRankSum=0.060;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	115176589	rs26536	A	G	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	115188660	rs152368	A	G	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-1.160;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:48,46:0.49:94
chr5	115298232	rs9326980	G	C	7161.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	115298378	rs10062297	C	T	7651.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr5	115298475	rs12520255	T	C	13685.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,523:1.00:523
chr5	115298518	rs12522632	A	G	20807.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.912;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=1.620;SOR=0.134;set=HC	GT:AD:AF:DP	1/1:2,807:1.00:809
chr5	115336862	rs7712021	T	C	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	115339086	rs6594929	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	115341611	rs10078748	G	T	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=1.277;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:137,120:0.47:257
chr5	115341638	rs10078759	G	C	1893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=0.729;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:107,98:0.48:205
chr5	115346245	rs17138646	T	G	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=2.824;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:105,69:0.40:174
chr5	115351150	rs10214076	T	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-0.197;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr5	115351224	rs17138667	G	A	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr5	115351420	.	C	G	3451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=2.035;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:286,196:0.41:482
chr5	115351498	rs17485148	C	T	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:118,81:0.41:199
chr5	115387421	rs1541801	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr5	115389626	rs954763	A	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr5	115389946	rs2662472	A	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.82;ReadPosRankSum=-0.180;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr5	115394357	rs6860908	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	115394396	rs6880121	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr5	115394551	rs6880325	C	T	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:80,109:0.58:189
chr5	115394626	rs6880759	G	T,A	5599.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=255;set=Intersection	GT:AF:DP	1/2:0.46,0.53:252
chr5	115426746	rs10065554	T	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	115428334	rs1129494	G	T	8536.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr5	115428439	rs6894046	T	A	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	115469773	rs1129496	C	T	12243.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,488:1.00:488
chr5	115627309	.	GT	G	165.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr5	115628120	rs11337562	CT	C	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.624;QD=2.23;ReadPosRankSum=-0.056;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:72,41:0.36:113
chr5	115811220	rs423834	T	C	4939.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:320,263:0.45:583
chr5	115813726	rs34966	A	G	15058.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr5	115814496	rs40102	C	G	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:83,72:0.46:155
chr5	115827356	rs154599	C	T	6424.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	115827407	rs154600	G	A	8398.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr5	115831873	rs32974	C	T	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:100,104:0.51:204
chr5	115832056	rs41099	G	A	1929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=1.578;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:109,99:0.48:208
chr5	115833090	rs148664380	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr5	115837772	rs154466	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr5	115838117	rs54100	C	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.18;ReadPosRankSum=-1.036;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr5	117329051	rs5870786	T	TAG,TAGACAC	9088.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=48.09;SOR=0.718;set=HC	GT:AD:AF:DP	1/2:0,122,67:0.65,0.35:189
chr5	117329067	rs370687978	CATATATAT	C	1850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-0.976;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:88,99:0.53:187
chr5	117329085	rs9688287	C	T	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=2.049;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:76,99:0.57:175
chr5	117329138	rs4404718	G	A	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:26,57:0.69:83
chr5	117938634	rs147234228	CACAT	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.60;MQRankSum=1.041;QD=8.39;ReadPosRankSum=1.008;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr5	118176842	rs3813297	T	C	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-2.240;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:33,39:0.54:72
chr5	118437730	rs78833402	G	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=0.200;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr5	118513246	rs34139050	C	CTG	1042.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=2.256;QD=17.98;ReadPosRankSum=0.297;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:28,30:0.52:58
chr5	118513876	rs79460759	G	A	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:120,109:0.48:229
chr5	118532034	rs6595178	A	C	1752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=0.129;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:97,90:0.48:187
chr5	118556350	rs2271059	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	118576096	rs377456338	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.296;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr5	118669224	rs11959659	G	A	2195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.065;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:112,112:0.50:224
chr5	118669304	rs56329027	C	T	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:138,129:0.48:267
chr5	118690998	rs3813309	A	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	118691121	rs73237297	G	T	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:98,117:0.54:215
chr5	118691693	rs3797339	C	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr5	118691737	rs3797340	C	G	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=1.691;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:75,63:0.46:138
chr5	118691784	rs3797341	T	C	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=0.054;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:108,82:0.43:190
chr5	118691832	rs3797342	C	T	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=-1.616;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:78,59:0.43:137
chr5	118691888	rs3797343	A	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.281;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr5	118691929	rs6595185	A	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	118727224	rs3733855	A	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr5	118728495	.	CT	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.368;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.013;QD=0.71;ReadPosRankSum=1.060;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:90,30:0.25:120
chr5	118788196	rs26180	C	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr5	118809533	rs10601221	CCA	C	1162.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr5	118811533	rs25640	G	A	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr5	118813240	rs457106	T	C	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:188,160:0.46:348
chr5	118813316	rs463513	A	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr5	118837658	rs257969	T	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,63:0.49:129
chr5	118837833	rs460945	CA	TG	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr5	118845089	rs32663	G	A	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-0.684;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr5	118845139	rs32664	G	A	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=1.403;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr5	118861085	.	TA	T	35	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=0.9998;HP=7;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=35;QD=28.0;SC=GAGTAGCATTTAAAAAAATGT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=118861093;WS=118861075;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	118861713	rs11205	A	G	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:75,71:0.49:146
chr5	118862971	rs2636961	C	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=0.977;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr5	118867173	rs17145464	G	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.945;QD=12.34;ReadPosRankSum=2.953;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr5	118877529	rs377089667	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.637;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr5	118965609	rs2431372	C	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,46:0.50:92
chr5	118965623	rs2434599	A	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr5	118968423	rs328698	T	G	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=1.948;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:147,124:0.46:271
chr5	118969960	rs328694	C	T	3903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-1.376;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:234,204:0.47:438
chr5	118970770	rs2434600	C	T	2948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.988;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-1.594;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:251,163:0.39:414
chr5	120021819	rs1158194	G	A	14047.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr5	121330223	rs6595336	C	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	121518309	rs9112	G	A	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:175,144:0.45:319
chr5	121726714	rs1946649	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.632;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-0.603;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr5	121761021	rs2242224	G	A	3021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.607;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.081;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:133,143:0.52:276
chr5	121767643	rs77615391	C	T	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-0.786;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:109,97:0.47:206
chr5	121776301	rs2290987	T	C	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:87,109:0.56:196
chr5	121779390	rs3811879	G	C	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:65,92:0.59:157
chr5	121785398	rs2737092	T	C	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr5	122012270	rs17132683	C	T	8824.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr5	122012354	rs2407398	A	G	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	122111005	rs2276988	G	T	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,64:0.47:135
chr5	122137708	rs965821	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr5	122161638	rs3213794	A	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	122163401	rs725638	T	C	44.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.20;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr5	122165470	rs138443824	TACACACACACACAC	T,TACACACAC	1296.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=66;set=Intersection	GT:AF:DP	1/2:0.71,0.29:35
chr5	122181225	rs2303048	G	A	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=-0.262;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr5	122226848	rs71594313	T	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=0.867;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr5	122267456	rs246314	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr5	122272641	rs30042	A	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	122281651	rs1038078	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr5	122281709	rs5871017	G	GT	1145.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.64;MQRankSum=0.559;QD=18.48;ReadPosRankSum=0.581;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:3,59:0.95:62
chr5	122301079	rs30055	T	G	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr5	122359502	rs10552214	AAC	A,AACAC	793.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.490;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=1.080;SOR=0.339;set=HC	GT:AD:AF:DP	1/2:9,31,14:0.57,0.26:54
chr5	122359839	rs144851383	G	GAC	412.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	122359840	rs374638812	CGTTTTTT	C	412.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	122372402	rs28373879	G	C	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	122425832	rs13182369	G	T	4332.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:190,220:0.54:410
chr5	122425861	.	A	AGCCGCC	1960.73	.	AC=1;AF=0.500;AN=2;DP=310;set=Intersection	GT:AD:AF:DP	0/1:101,97:0.49:198
chr5	122425971	rs199942027	A	ACCTCCGCCT	1654.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr5	122426334	rs72373561	GGGCGCC	G	2669.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.45;ReadPosRankSum=0.046;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,63:0.95:66
chr5	122436528	rs163188	C	G	1984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.348;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:130,108:0.45:238
chr5	122491826	rs35231752	A	AT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.627;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr5	122495152	rs13161561	T	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr5	122506891	rs34706194	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr5	122682154	rs2303719	T	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	122682348	rs1047438	A	G	21583.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,849:1.00:849
chr5	122685727	rs1047437	C	G	4086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=0.201;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:158,203:0.56:361
chr5	122685801	rs485847	G	A	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	122685906	rs35423173	CT	C	478.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	122714134	rs141010737	TAAAAAA	T	1524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=6.798;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.817;QD=17.53;ReadPosRankSum=-1.544;SOR=1.866;set=HC	GT:AD:AF:DP	0/1:40,47:0.54:87
chr5	122718736	rs6595440	G	C	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	122722369	.	T	TA	64.84	.	AC=2;AF=1.00;ALERT;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	122722370	rs3893854	T	A	73.88	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	122727026	rs6876883	G	A	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	122728913	rs35574017	C	T	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	122734724	rs11419318	T	TA	37.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	122739421	rs7715577	G	C	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	122754293	rs71574108	GTT	G	842.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.634;QD=16.52;ReadPosRankSum=-2.128;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:16,35:0.69:51
chr5	122758167	rs62377766	A	T	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr5	122758268	rs6882791	G	C	7176.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	123966143	rs375097374	AGTGTGTGT	A,AGTGTGTGTGT	326.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	0/1:0.47:19
chr5	123974608	rs4371750	T	C	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-1.731;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:43,40:0.48:83
chr5	123974673	rs62370761	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr5	123983915	rs6862252	G	T	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:168,100:0.37:268
chr5	123984763	rs7708070	C	T	6036.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:349,311:0.47:660
chr5	123985320	rs61752317	G	A	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:73,92:0.56:165
chr5	123985484	rs11422549	C	CA	575.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr5	124036907	rs61752319	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:78,86:0.52:164
chr5	124044428	rs11241764	C	T	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-1.836;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:104,91:0.47:195
chr5	125696140	rs11241887	G	A	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	125802027	rs62394179	G	A	5265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.943;QD=10.37;ReadPosRankSum=0.030;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:238,270:0.53:508
chr5	125820276	rs144250138	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=-0.151;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr5	125828803	rs4358517	A	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr5	125880589	rs2775	T	C	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	125886071	rs1038381	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr5	125887715	rs12514417	T	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr5	125891516	rs7713264	T	A	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:102,102:0.50:204
chr5	125895120	.	GTTTTGGT	G	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=61.06;MQRankSum=2.555;QD=3.45;ReadPosRankSum=3.215;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr5	125906607	rs180985029	A	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr5	125929000	.	A	AACAC	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-1.457;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr5	125944219	rs112502491	G	GTGTTTT	998.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	126156551	rs74480742	G	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=6.133;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.855;QD=9.15;ReadPosRankSum=0.710;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr5	126250459	.	A	AACACAC	1378.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=5.994;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.607;QD=24.62;ReadPosRankSum=-1.648;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:19,37:0.66:56
chr5	126746277	rs31483	C	T	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	126792974	rs3812052	T	A	8636.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr5	126993249	rs45074	G	C	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=-1.111;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:148,104:0.41:252
chr5	126993263	rs248709	A	T	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:164,129:0.44:293
chr5	127485599	rs2617618	C	T	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	127522153	rs11382084	G	GT,GTT	2452.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.960;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;MQRankSum=1.038;QD=16.24;ReadPosRankSum=-1.682;SOR=0.858;set=HC	GT:AD:AF:DP	1/2:21,83,47:0.55,0.31:151
chr5	127607934	rs10038028	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr5	127613791	rs426987	C	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.92;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	127614472	rs190450	A	G	7116.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	127622983	rs2042327	C	T	6707.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	127640783	rs27713	G	A	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	127640861	rs27855	A	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	127648188	rs461146	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr5	127648500	rs10044959	A	G	7346.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:271,353:0.57:624
chr5	127671924	rs32221	A	G	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.506;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:51,58:0.53:109
chr5	127680042	rs17676694	A	T	3717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.638;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:232,196:0.46:428
chr5	127685135	rs154001	C	T	1315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=1.094;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:138,77:0.36:215
chr5	127685624	rs255690	C	A	2131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-0.208;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:126,115:0.48:241
chr5	127777978	rs17164115	T	C	2416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=0.829;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:108,124:0.53:232
chr5	127872314	rs6865828	A	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr5	127872953	rs73348283	T	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr5	127873114	rs73348287	G	C	8034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.988;ClippingRankSum=0.000;DB;DP=843;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.077;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:418,420:0.50:838
chr5	127873186	rs55715053	C	T	4085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-2.459;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:224,207:0.48:431
chr5	128301824	rs2526246	T	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	128301885	rs2526247	T	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	128301971	rs2577541	T	C	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	128302368	rs147696009	CCT	C	978.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:5,55:0.92:60
chr5	128359247	rs31271	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	128732672	rs13171514	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr5	128732848	rs7443230	C	T	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	128797105	rs72663400	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	128797156	rs182638734	C	G	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	128797315	rs142924298	T	TCCCGGC	15177.73	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr5	128863471	rs6595908	A	G	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	129015452	rs30645	T	C	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr5	129015668	rs246443	T	C	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr5	129072943	rs1465686	G	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	129100819	rs35674869	AC	A	461.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	129240972	rs33917	G	C	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	129244133	rs2431206	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	129519874	rs10066410	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr5	129521126	rs2015018	A	G	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:134,141:0.51:275
chr5	130766662	rs1291602	T	C	9903.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr5	130808198	rs31241	T	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	130831365	rs40400	T	C	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	130867733	rs1029472	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	130982768	rs26006	A	G	15369.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,605:1.00:605
chr5	131006082	rs27450	A	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	131006356	rs26007	T	A	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.74;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	131008194	rs26008	T	C	11356.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr5	131066577	rs7729787	A	C	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	131066725	rs7730228	C	A	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr5	131312238	rs11743803	A	G	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:10,81:0.89:91
chr5	131312327	rs370652	G	T	11630.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.51;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,456:1.00:456
chr5	131322494	rs77938	C	T	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	131322666	rs67212057	CCACACACTCACA	C	911.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	131324119	rs71970	T	G	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	131324250	rs3043838	C	CTG	16493.73	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:2,643:1.00:645
chr5	131325888	rs422130	A	G	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	131326522	rs5871439	AC	A	17078.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.136;QD=27.82;ReadPosRankSum=-1.647;SOR=0.611;set=HC	GT:AD:AF:DP	1/1:9,605:0.99:614
chr5	131330054	rs253944	C	G	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	131347520	rs4705908	G	A	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	131534499	rs3749756	C	T	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	131546280	rs154483	A	G	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr5	131553340	rs2301579	C	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	131553428	rs3214098	T	TA	4368.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	131553665	rs154485	A	G	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	131593336	rs70974026	C	CG	3757.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=32.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	131593363	.	GGCT	G	2906.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;MQRankSum=-0.344;QD=23.07;ReadPosRankSum=-2.119;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:4,122:0.97:126
chr5	131593373	.	GCGGCGGCTC	G	3149.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;MQRankSum=-0.228;QD=25.61;ReadPosRankSum=-1.065;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:2,121:0.98:123
chr5	131602166	rs1007602	T	C	12927.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:2,491:1.00:493
chr5	131607300	rs55722650	C	T	44947.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.854;ClippingRankSum=0.000;DB;DP=1768;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.36;ReadPosRankSum=-0.168;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:1,1704:1.00:1705
chr5	131607402	rs10479000	T	C	50029.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.472;ClippingRankSum=0.000;DB;DP=1986;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.86;ReadPosRankSum=-0.845;SOR=0.694;set=HC	GT:AD:AF:DP	1/1:2,1933:1.00:1935
chr5	131630852	rs35260072	A	C	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr5	131649186	rs270607	A	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	131658085	rs270600	T	C	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	131660119	rs273915	G	C	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	131660431	rs273914	A	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	131663062	rs272893	T	C	7003.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	131670546	rs272879	C	G	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	131671769	rs272878	T	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.66;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	131676320	rs1050152	C	T	8769.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr5	131701279	rs367805	T	C	7160.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr5	131719999	rs4551059	A	G	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	131730052	rs60522531	CA	C	3591.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	131755477	rs4451042	G	T	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	131792639	rs3214157	A	AT	3150.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:15,148:0.91:163
chr5	131796498	rs2522048	T	C	11784.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr5	131796573	rs2522049	T	C	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr5	131821520	rs142244361	G	GAC	617.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr5	131892357	rs2706335	C	T	11417.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr5	131892979	rs4526098	G	A	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	131915213	rs17166050	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr5	131972916	rs137906075	A	G	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:114,94:0.45:208
chr5	131973663	rs2074369	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	131995843	rs1295686	T	C	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	131995964	rs20541	A	G	10174.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr5	132036252	rs1468216	T	C	10413.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr5	132036489	rs1468215	A	T	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	132038199	rs3213639	C	T	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.397;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	132039132	rs2285700	C	A	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	132046789	rs11740584	G	C	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	132056147	rs2074529	C	A	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	132070242	rs7732520	C	T	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	132098242	rs30510	A	G	10385.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr5	132149322	.	G	GGCCGCCGCC	708.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr5	132149684	rs40274	G	C	7318.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	132150024	rs4266393	C	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr5	132150132	rs115553646	C	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=0.470;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr5	132150948	rs40470	T	G	14901.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr5	132198100	rs10491279	C	T	3903.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:279,213:0.43:492
chr5	132198199	rs254286	G	A	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:103,122:0.54:225
chr5	132198287	rs254285	C	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	132220748	rs45441396	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-0.378;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr5	132220941	rs3835017	CGTGTGT	C,CGT	1010.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	1/2:0.60,0.40:25
chr5	132227677	rs6596093	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	132228133	rs11739417	A	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-0.662;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr5	132234152	rs34099243	C	CG	597.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	132239920	.	G	GA	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.894;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr5	132270663	rs10039125	T	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr5	132273031	rs2288387	T	C	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr5	132334252	rs3087646	A	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:144,91:0.39:235
chr5	132335951	rs2059783	A	G	2789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=1.281;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:157,147:0.48:304
chr5	132362336	rs147467222	A	AG	578.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr5	132408905	.	C	CT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.251;QD=0.22;ReadPosRankSum=2.440;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:182,34:0.16:216
chr5	132433049	rs55643445	G	T	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:158,147:0.48:305
chr5	132546059	rs3828692	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr5	132560774	rs72803107	G	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr5	132561277	rs2241583	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:85,57:0.40:142
chr5	132569260	rs35758896	GCCT	G	3339.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:71,86:0.55:157
chr5	132918828	rs13162005	C	T	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=0.105;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr5	132939412	rs72789144	C	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=-0.537;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr5	133316325	rs55708320	T	TA	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=4.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=2.669;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:183,86:0.32:269
chr5	133450497	rs173424	A	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	133537438	rs2302598	T	A	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	133537479	rs2302599	T	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	133541548	rs2239543	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	133561589	rs3863186	G	C	22753.77	.	AC=2;AF=1.00;AN=2;DB;DP=885;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.06;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,873:1.00:873
chr5	133655029	.	G	GA	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.257;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr5	133655067	rs373913998	C	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=0.221;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:61,36:0.37:97
chr5	133657610	rs139337657	G	GA	6055.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:5,266:0.98:271
chr5	133873572	rs329126	A	C	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	133887780	rs12163993	G	A	30860.77	.	AC=2;AF=1.00;AN=2;DB;DP=1211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,1186:1.00:1186
chr5	133896744	rs2589404	A	G	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	133897829	rs329304	C	T	12957.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr5	133900111	rs329311	A	C	7575.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr5	133909475	rs329322	G	A	4968.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:234,254:0.52:488
chr5	133942492	rs7728741	T	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr5	133944043	rs201249311	AT	A	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.980;QD=5.48;ReadPosRankSum=0.100;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:55,70:0.56:125
chr5	133956668	rs11558540	G	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr5	133984645	rs61421945	CT	C	2003.73	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:240,124:0.34:364
chr5	134007706	.	CTTAT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=0.842;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr5	134011834	.	C	CT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.31;ReadPosRankSum=1.202;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:125,34:0.21:159
chr5	134015523	rs10042142	C	G	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	134033777	rs246341	G	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	134039742	rs151247213	TTTTA	T	216.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	134076812	rs12657663	G	A	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:161,107:0.40:268
chr5	134106761	rs35505581	CTCTT	C	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=0.873;QD=19.30;ReadPosRankSum=0.297;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr5	134109602	rs2059803	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	134113558	rs254713	G	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	134164284	rs34675300	GT	G	130.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-1.562;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr5	134223593	rs3733897	A	G	4369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.646;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:226,220:0.49:446
chr5	134344497	rs299376	T	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr5	134344929	rs299378	C	G	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	134346304	rs877812	G	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr5	134364406	rs71660434	TCCGCGC	T	868.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr5	134364996	rs1131611	G	T	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:220,185:0.46:405
chr5	134365070	rs10056994	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr5	134365091	rs474853	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr5	134368721	rs10716861	CA	C	737.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr5	134369258	rs72800397	G	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr5	134678863	rs868733	G	A	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:69,96:0.58:165
chr5	134782414	rs12518053	G	T	4104.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:217,197:0.48:414
chr5	134782450	rs12520799	T	A	4809.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:255,244:0.49:499
chr5	134782510	rs12520809	T	C	5506.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:327,292:0.47:619
chr5	134782576	rs1031844	T	G	4318.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:262,223:0.46:485
chr5	134986006	rs801560	G	A	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	134986196	rs10045717	C	T	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	134986256	rs149152270	A	AAAC	1906.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=38.13;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:1,49:0.98:50
chr5	135138782	rs11738183	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.967;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr5	135178124	rs2304075	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:123,58:0.32:181
chr5	135186075	rs2304077	A	G	5462.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:331,284:0.46:615
chr5	135188214	rs2304078	G	C	4964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=1.080;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:281,268:0.49:549
chr5	135207382	rs2304080	C	T	4543.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:254,231:0.48:485
chr5	135215575	rs2269926	A	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr5	135215835	.	CT	C,CTT	1511.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=1.934;SOR=0.716;set=HC	GT:AD:AF:DP	1/2:31,78,69:0.44,0.39:178
chr5	135223713	rs9327734	G	T	4077.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:190,207:0.52:397
chr5	135228165	rs2069885	G	A	1993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-0.262;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:111,105:0.49:216
chr5	135229633	rs2069882	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr5	135257940	rs2051699	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.10;ReadPosRankSum=-0.342;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr5	135258053	rs115645824	C	T	1099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=-0.556;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:85,59:0.41:144
chr5	135272373	rs140125393	C	CA	4671.73	.	AC=1;AF=0.500;AN=2;DB;DP=342;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:158,181:0.53:339
chr5	135276201	rs1160982	AGTT	A	2091.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=2.301;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:88,57:0.39:145
chr5	135276314	rs40986	C	T	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:178,129:0.42:307
chr5	135276701	rs31548	T	C	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=0.191;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:70,87:0.55:157
chr5	135276847	rs31547	T	C	2242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=3.210;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:92,115:0.56:207
chr5	135277394	rs11376205	G	GT	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr5	135365006	rs4976361	A	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	135379612	rs4976464	A	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	135382989	rs1442	G	C	8785.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr5	135513085	rs55765823	T	TC	7949.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	135700760	rs11307237	GA	G	172.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	135700900	rs11404834	G	GA	4485.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:5,198:0.98:203
chr5	136315200	rs3217011	AT	A	9299.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	136320758	rs17521219	A	G	4158.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:182,212:0.54:394
chr5	136328367	rs3777224	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr5	136476436	.	ATT	A	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.991;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr5	136833955	.	CCACA	C	1725.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.691;QD=18.36;ReadPosRankSum=-2.546;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:46,48:0.51:94
chr5	136975692	rs11743510	C	T	2560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=8.18;ReadPosRankSum=0.805;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:175,138:0.44:313
chr5	137055989	.	C	CA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.121;QD=5.76;ReadPosRankSum=1.201;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr5	137206560	rs6890689	A	C	14486.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.135;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=1.729;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:1,562:1.00:563
chr5	137241856	rs700605	T	C	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	137244517	rs1880458	G	A	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	137257288	rs4304074	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	137259179	rs12187140	T	C	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	137259251	rs13188503	C	T	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	137271340	rs11743778	G	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr5	137271968	rs7701617	T	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	137272149	.	C	CT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.076;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:42,15:0.26:57
chr5	137281708	rs1125979	A	C	5033.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=3.555;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=1.307;SOR=0.634;set=HC	GT:AD:AF:DP	1/1:1,194:0.99:195
chr5	137292133	rs3836896	C	CA	4358.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.82;ReadPosRankSum=-0.268;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:6,185:0.97:191
chr5	137295823	rs9327802	T	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	137297923	rs4835738	C	T	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	137323117	rs7714536	A	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	137342589	rs3756686	T	C	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	137347403	rs12187885	G	A	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	137347498	rs10064910	G	A	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	137354851	rs66908638	CA	C	226.19	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr5	137372207	rs6596419	A	T	12139.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr5	137420376	rs4835762	T	C	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	137426447	rs6596422	G	A	10866.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr5	137427274	rs3860103	G	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	137454358	rs6878575	C	G	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	137476416	rs412051	T	C	12446.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr5	137485292	rs217270	C	T	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	137497429	.	A	T	1715.77	.	AC=1;AF=0.500;AN=2;DP=165;set=Intersection	GT:AD:AF:DP	0/1:75,86:0.53:161
chr5	137501857	rs76314467	G	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr5	137507104	rs200476181	TAA	T,TA	1803.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.787;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.498;QD=11.71;ReadPosRankSum=-0.780;SOR=0.910;set=HC	GT:AD:AF:DP	1/2:25,67,62:0.44,0.40:154
chr5	137508551	rs374484458	CA	C	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=1.603;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:30,40:0.57:70
chr5	137513369	rs10671440	G	GAA	3016.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.234;QD=22.68;ReadPosRankSum=3.022;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:6,127:0.95:133
chr5	137527917	rs2231478	C	G	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	137588969	rs200095891	G	GCC	3275.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:107,89:0.45:196
chr5	137589876	rs367624929	CT	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.433;QD=1.38;ReadPosRankSum=-1.356;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:76,32:0.30:108
chr5	137622388	rs10515500	C	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr5	137627623	rs11567991	A	G	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.296;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=1.572;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr5	137627623	.	AAG	GAT	250	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=7;NR=3;PP=250;QD=30.3467874862;SC=CATGAGATAGAAGATGAACAA;SbPval=0.47;Source=Platypus;TC=16;TCF=12;TCR=4;TR=10;WE=137627633;WS=137627613;set=Platypus	GT:AD:AF:DP	0/1:6,10:0.62:16
chr5	137627625	rs11567990	G	T	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.16;ReadPosRankSum=2.245;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr5	137661434	rs3734165	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr5	137708434	rs4835678	C	T	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:163,142:0.47:305
chr5	137717213	rs10073922	G	A	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:75,97:0.56:172
chr5	137717265	rs6865472	G	A	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	137735754	rs4835680	A	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr5	137754695	rs7726234	T	C	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:157,143:0.48:300
chr5	137763615	rs2240334	A	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr5	137775581	rs982085	C	G	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=-0.004;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:38,54:0.59:92
chr5	137776931	rs2269947	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr5	137777269	rs12516269	A	G	3357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.925;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:118,163:0.58:281
chr5	137780336	rs4835794	T	C	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	137780368	rs2240331	C	A	3929.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:158,187:0.54:345
chr5	137844274	rs2242599	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr5	137846155	rs4835685	A	G	13386.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,521:1.00:521
chr5	137847078	.	TACACACACAC	T	545.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.21;ReadPosRankSum=1.003;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr5	137847082	rs35404194	C	T	257.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.294;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.067;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr5	137847090	rs376642798	CAT	C	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.244;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.237;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr5	137849526	rs10077407	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-1.537;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr5	137892170	rs10117	G	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr5	137896597	rs10652442	A	AT	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=1.403;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr5	137897589	rs256007	A	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr5	137902868	rs71574426	GA	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=0.031;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr5	137906870	rs147364929	A	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr5	137909674	rs41294566	GAGA	G	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr5	138117938	rs700626	A	G	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.838;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:141,110:0.44:251
chr5	138216625	rs5871683	G	GA	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr5	138221989	rs288028	G	C	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr5	138266546	rs1059110	G	A	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:164,163:0.50:327
chr5	138266552	rs11552052	C	G	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:165,163:0.50:328
chr5	138456815	rs3088052	T	C	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-0.873;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:128,83:0.39:211
chr5	138463538	rs11555154	G	C	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.296;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.440;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:48,53:0.52:101
chr5	138473077	rs11431215	C	CA	4888.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	138642997	.	A	AT	26	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=5;HapScore=2;MGOF=3;MMLQ=27;MQ=59.25;NF=3;NR=0;PP=26;QD=19.0;SC=TGGCGTTACCATTTTTGAAGC;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=3;WE=138643005;WS=138642987;set=Platypus	GT:AD:AF:DP	0/1:4,3:0.43:7
chr5	138643062	rs12153162	T	A	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.167;QD=6.60;ReadPosRankSum=1.359;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:51,36:0.41:87
chr5	138660881	.	C	CA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.857;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:67,17:0.20:84
chr5	138662111	rs34218388	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=2.056;QD=2.44;ReadPosRankSum=0.000;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr5	138713959	rs6596474	A	C	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	138714474	rs11950646	G	A	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:140,121:0.46:261
chr5	138716491	rs72552253	C	T	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:140,145:0.51:285
chr5	138718476	rs11242461	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	138718878	rs59914331	C	CA	608.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	138720108	rs11242462	C	T	5019.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:269,250:0.48:519
chr5	138720156	rs12515989	C	T	10279.77	.	AC=1;AF=0.500;AN=2;DB;DP=1003;set=Intersection	GT:AD:AF:DP	0/1:477,520:0.52:997
chr5	138720336	rs6596476	T	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	138723112	rs138480317	C	CTCCA	670.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr5	138723168	.	G	GT	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.686;QD=1.36;ReadPosRankSum=0.732;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:145,51:0.26:196
chr5	138724126	rs33937093	TG	T	2049.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=30.59;SOR=1.410;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	138724457	rs9327846	A	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	138728483	rs10078623	A	G	10080.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:2,386:0.99:388
chr5	138728533	rs10063870	C	T	4820.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:233,239:0.51:472
chr5	138729991	rs200694387	G	C	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:169,155:0.48:324
chr5	138730037	rs11748963	T	C	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:109,113:0.51:222
chr5	138732579	rs10900862	C	T	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:143,142:0.50:285
chr5	138738178	rs4074032	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr5	138754741	rs4835728	T	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,61:0.54:114
chr5	138773090	rs10900864	A	G	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:167,190:0.53:357
chr5	138775173	rs3923059	T	C	4401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.426;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:189,224:0.54:413
chr5	138852369	rs13153461	G	A	6755.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:275,333:0.55:608
chr5	138856982	rs7380824	C	T	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:174,120:0.41:294
chr5	138857919	rs1131769	T	C	7984.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.87;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	138857919	.	TGGTCAC	CGGTCAC,CGGTCAG	938	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=23;MQ=59.9;NF=51,23;NR=43,19;PP=938,550;QD=10.3486299207;SC=GATGCCAGCATGGTCACCGGT;SbPval=0.55;Source=Platypus;TC=94;TCF=51;TCR=43;TR=94,42;WE=138857933;WS=138857909;set=Platypus	GT:AF:DP	0/1:1.00:94
chr5	138857925	rs78233829	C	G	2112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=2.286;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:138,112:0.45:250
chr5	138861078	rs11554776	C	T	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:257,165:0.39:422
chr5	138861146	rs7447927	C	G	4837.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:176,227:0.56:403
chr5	138942117	rs75037374	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr5	139003216	rs112754032	A	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr5	139061148	rs57638253	CT	C	887.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	139213452	rs4912884	A	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	139216901	rs11440487	A	AG	9098.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	139232299	rs2302984	C	A	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr5	139239515	rs3214446	C	CG	1993.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr5	139245068	rs142244216	A	G	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:114,95:0.45:209
chr5	139245086	rs1800954	A	G	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:131,111:0.46:242
chr5	139251469	rs1800953	T	G	6509.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:332,327:0.50:659
chr5	139260428	rs889022	T	C	4459.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:222,224:0.50:446
chr5	139422232	rs144634106	G	A	4735.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:205,236:0.54:441
chr5	139740454	rs34507975	C	T	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	139745154	rs6860077	T	C	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	139876028	.	C	CT	149	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=0.5009;HP=16;HapScore=4;MGOF=30;MMLQ=15;MQ=56.08;NF=10;NR=3;PP=149;QD=11.9230769231;SC=GGCTGGTTTTCTTTTTTTTTT;SbPval=0.91;Source=Platypus;TC=18;TCF=11;TCR=7;TR=13;WE=139876036;WS=139876018;set=Platypus	GT:AD:AF:DP	1/1:5,13:0.72:18
chr5	139876046	.	CTTT	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.36;ReadPosRankSum=-0.601;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr5	139909533	rs78033585	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr5	139936680	rs368729292	ACC	A,AC	22665.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=1013;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.610;QD=24.64;ReadPosRankSum=1.204;SOR=0.531;set=HC	GT:AD:AF:DP	1/2:23,614,283:0.67,0.31:920
chr5	139936760	rs250426	G	T	21278.77	.	AC=2;AF=1.00;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	1/1:1,828:1.00:829
chr5	139936980	rs250427	A	G	21631.77	.	AC=2;AF=1.00;AN=2;DB;DP=844;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,837:1.00:837
chr5	139939961	rs61736940	G	A	4240.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:202,212:0.51:414
chr5	139940233	rs250431	G	A	26923.77	.	AC=2;AF=1.00;AN=2;DB;DP=1070;set=Intersection	GT:AD:AF:DP	1/1:2,1046:1.00:1048
chr5	139941228	rs250430	A	G	13848.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr5	139941318	rs171632	A	G	10384.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr5	139947520	rs140885624	G	A	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:177,164:0.48:341
chr5	140021482	rs11554680	C	T	8779.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr5	140021858	rs12153256	A	T	6279.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr5	140022436	rs3822356	A	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	140023238	rs17208187	C	G	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	140024042	rs753280	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	140024432	rs702399	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	140024491	rs702398	A	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	140027216	rs778593	T	C	9032.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr5	140027304	rs778594	T	C	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr5	140027625	.	GTGTGTATGTA	G	408.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr5	140027627	rs34449052	GTGTATGTA	G	364.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr5	140031537	rs1583005	G	A	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	140037272	rs778596	G	A	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	140039877	rs200714869	CTTTT	C	795.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.886;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.17;ReadPosRankSum=-1.555;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr5	140048209	rs2251860	T	C	9378.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr5	140048267	rs2530245	T	C	6746.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr5	140048544	rs2286394	C	T	8498.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr5	140051983	rs2530243	C	T	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	140052271	rs2563333	A	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.78;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	140054257	rs58302597	C	T	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	140054485	rs2530241	C	T	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr5	140062547	rs2530239	C	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	140073883	rs6883035	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	140075011	rs112793807	C	CAGTTGATAT	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	140077699	rs2530234	A	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	140080298	rs801168	T	C	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	140081791	rs809635	A	G	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	140083744	rs17286731	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	140085390	.	CGT	C	46	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=46;QD=28.5;SC=CCTAACTTTGCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=2;WE=140085399;WS=140085380;set=Platypus	GT:AD:AF:DP	1/0:14,2:0.12:16
chr5	140175932	rs111743563	A	G	2288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.102;QD=6.71;ReadPosRankSum=-0.788;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:213,128:0.38:341
chr5	140181094	rs251382	C	T	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,62:0.54:115
chr5	140220817	.	T	C	246.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr5	140220910	rs111298048	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:78,30:0.28:108
chr5	140228164	rs251353	C	A	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	140228410	rs17844322	A	G	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.238;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=18.158;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-12.013;QD=3.43;ReadPosRankSum=-3.095;SOR=1.901;set=HC	GT:AD:AF:DP	0/1:227,40:0.15:267
chr5	140228413	rs17844323	C	A	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.855;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=14.258;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-12.175;QD=3.39;ReadPosRankSum=-2.756;SOR=1.706;set=HC	GT:AD:AF:DP	0/1:231,40:0.15:271
chr5	140229086	rs251354	C	G	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	140230370	rs369636	AA	CC	28375.73	.	AC=2;AF=1.00;AN=2;DB;DP=656;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr5	140237387	rs251364	T	G	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr5	140237548	rs630162	A	G	25048.77	.	AC=2;AF=1.00;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	1/1:0,958:1.00:958
chr5	140242451	rs11321479	GC	G	4562.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	140242479	rs251369	T	A	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	140248539	rs192231	C	T	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	140255792	rs251377	C	A	10796.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chr5	140263290	rs251380	T	G	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	140348604	.	G	A	2681.77	.	AC=1;AF=0.500;AN=2;DP=281;set=Intersection	GT:AD:AF:DP	0/1:142,135:0.49:277
chr5	140476653	rs1047372	GC	AA	2023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.873;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.16;MQRankSum=-0.110;QD=21.30;ReadPosRankSum=-0.027;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:44,51:0.54:95
chr5	140480852	rs12515688	G	A	4001.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:165,191:0.54:356
chr5	140481475	rs3733699	A	T	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:90,94:0.51:184
chr5	140482483	rs31848	G	A	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.167;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=42.32;MQRankSum=0.351;QD=14.24;ReadPosRankSum=-0.905;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:22,27:0.55:49
chr5	140502343	rs3733698	CC	TT	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;JOINED;set=Intersection	GT:AD:AF:DP	0/1:157,114:0.42:271
chr5	140517174	rs400562	T	C	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-0.351;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:25,26:0.51:51
chr5	140529711	rs4151693	C	T	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	140529778	rs4151694	C	G	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.275;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr5	140530529	rs3776096	G	A	6343.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:249,298:0.54:547
chr5	140530973	rs78429888	G	A	4870.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:217,246:0.53:463
chr5	140553581	rs2910313	G	C	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:62,70:0.53:132
chr5	140554606	rs11741863	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:136,52:0.28:188
chr5	140554808	rs6892507	T	A	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.898;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:276,101:0.27:377
chr5	140559914	rs2740583	T	C	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=0.656;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:83,62:0.43:145
chr5	140561983	rs2204704	A	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr5	140564048	rs17844664	G	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr5	140564088	rs13176519	C	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr5	140564263	rs17844666	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr5	140567264	rs2740588	G	T	3214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-0.062;QD=10.68;ReadPosRankSum=-0.979;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:138,163:0.54:301
chr5	140567445	rs17844512	A	G	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:63,76:0.55:139
chr5	140567608	rs11167743	C	T	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:332,155:0.32:487
chr5	140568026	rs2697531	T	C	2633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.762;QD=9.05;ReadPosRankSum=0.665;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:152,139:0.48:291
chr5	140568034	rs33974901	C	CA	10635.73	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=40.75;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	140569353	rs3733691	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.602;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-2.128;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr5	140572668	rs597064	C	T	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:93,97:0.51:190
chr5	140581510	rs638054	G	T	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:77,65:0.46:142
chr5	140594442	rs17844607	A	G	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-15.696;QD=2.24;ReadPosRankSum=-0.185;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:524,138:0.21:662
chr5	140594466	rs17844608	GG	AA	1788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=3.704;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-19.187;QD=3.34;ReadPosRankSum=-1.940;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:457,79:0.15:536
chr5	140594470	rs17844610	G	A	1673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.141;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=3.888;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-19.201;QD=3.25;ReadPosRankSum=-2.895;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:442,73:0.14:515
chr5	140603391	.	A	G	5364.77	.	AC=1;AF=0.500;AN=2;DP=529;set=Intersection	GT:AD:AF:DP	0/1:244,272:0.53:516
chr5	140614670	rs61733834	C	A	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:165,151:0.48:316
chr5	140626566	rs618506	A	C	2366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-1.688;QD=18.93;ReadPosRankSum=0.247;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:64,61:0.49:125
chr5	140626571	rs652104	C	A	2421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-1.762;QD=17.55;ReadPosRankSum=0.529;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:72,66:0.48:138
chr5	140626627	rs618096	G	A	3216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-1.197;QD=9.01;ReadPosRankSum=0.572;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:186,171:0.48:357
chr5	140683265	rs11952797	G	A	23417.77	.	AC=2;AF=1.00;AN=2;DB;DP=904;set=Intersection	GT:AD:AF:DP	1/1:0,875:1.00:875
chr5	140710705	rs2472647	G	A	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	140736337	.	C	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DP=691;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.371;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:572,103:0.15:675
chr5	140750044	rs6860609	T	C	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	140755860	rs189836587	G	C	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:131,150:0.53:281
chr5	140773812	rs144796076	G	A	8558.77	.	AC=1;AF=0.500;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	0/1:422,424:0.50:846
chr5	140774288	rs4912749	T	C	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	140795128	rs11575963	T	C	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:102,74:0.42:176
chr5	140803317	.	TG	T	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=6.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.145;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr5	140907266	.	TA	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=-0.000;DP=42;ExcessHet=3.0103;FS=4.752;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.629;QD=1.81;ReadPosRankSum=2.153;SOR=1.815;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr5	140915703	rs79832875	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr5	140953563	rs35249023	TGGA	T	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-1.611;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:159,16:0.09:175
chr5	140955777	rs2302103	C	T	2226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-2.531;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:170,125:0.42:295
chr5	140968040	.	G	GAAAA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr5	141005623	.	C	T	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.125;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:534,103:0.16:637
chr5	141014494	rs2530223	T	C	1140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=-0.250;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:81,59:0.42:140
chr5	141016276	rs32954	T	C	37416.77	.	AC=2;AF=1.00;AN=2;DB;DP=1117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.89;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,1104:1.00:1104
chr5	141016288	rs1421896	T	G	9351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=1071;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=5.201;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:572,485:0.46:1057
chr5	141019110	rs14251	C	A	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:197,158:0.45:355
chr5	141020100	rs41098	C	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,45:0.46:98
chr5	141022655	.	T	C	1367.77	.	AC=1;AF=0.500;AN=2;DP=189;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr5	141024048	rs469522	A	G	3646.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:163,174:0.52:337
chr5	141024136	rs469074	T	G	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:167,133:0.44:300
chr5	141025162	rs456998	G	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr5	141026884	rs251177	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr5	141027399	rs468968	TG	CC	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr5	141034123	rs6580194	T	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr5	141034749	.	T	TACACACACACACAC	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.97;ReadPosRankSum=1.981;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr5	141035374	rs7715559	G	A	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:92,97:0.51:189
chr5	141036337	rs7703648	A	G	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:197,155:0.44:352
chr5	141041148	rs6891143	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr5	141041435	rs3749759	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr5	141044472	rs2306337	A	G	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.613;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:109,114:0.51:223
chr5	141045973	rs143722578	C	G	1315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=2.821;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:62,69:0.53:131
chr5	141049407	rs3763120	G	A	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:153,146:0.49:299
chr5	141052870	rs440279	G	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:85,44:0.34:129
chr5	141059649	rs417503	A	G	5558.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:188,257:0.58:445
chr5	141059868	rs11167756	T	C	5983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=0.133;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:289,296:0.51:585
chr5	141235916	rs145694332	TGGGAGGTTAGACAAGGGCCC	T	2266.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr5	141257977	.	AGGCGGC	A	1159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.002;QD=17.57;ReadPosRankSum=-1.602;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:32,34:0.52:66
chr5	141303633	rs13183870	C	A	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:93,134:0.59:227
chr5	141303688	rs13183994	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr5	141304314	rs6580206	T	A	9360.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.002;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=4.870;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=-6.561;QD=32.28;ReadPosRankSum=0.889;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:10,280:0.97:290
chr5	141304318	rs10058907	T	G	6587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-2.096;QD=20.21;ReadPosRankSum=0.999;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:137,189:0.58:326
chr5	141304326	rs112383381	T	G	5963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-1.976;QD=22.09;ReadPosRankSum=4.141;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:125,145:0.54:270
chr5	141304328	rs68113458	TG	T	5596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.913;QD=22.21;ReadPosRankSum=3.111;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:111,141:0.56:252
chr5	141304390	rs13170508	A	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr5	141307833	rs10036567	T	C	5415.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:219,272:0.55:491
chr5	141309265	rs10078802	C	T	5309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=1.314;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:302,283:0.48:585
chr5	141314250	rs2286523	G	A	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.091;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:43,48:0.53:91
chr5	141316946	rs10064193	C	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr5	141324906	rs144332862	A	G	4618.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:242,238:0.50:480
chr5	141324955	rs5871792	C	CCTGCTGCTG	4659.73	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:244,237:0.49:481
chr5	141325249	rs105633	T	C	14621.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr5	141334921	rs2434322	C	T	7981.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:360,391:0.52:751
chr5	141335241	rs164073	A	G	22960.77	.	AC=2;AF=1.00;AN=2;DB;DP=872;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=26.45;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,868:1.00:868
chr5	141335284	rs164074	G	A	19724.77	.	AC=2;AF=1.00;AN=2;DB;DP=746;set=Intersection	GT:AD:AF:DP	1/1:0,738:1.00:738
chr5	141336264	rs164075	G	T	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr5	141336560	.	T	C	5259.77	.	AC=1;AF=0.500;AN=2;DP=591;set=Intersection	GT:AD:AF:DP	0/1:304,277:0.48:581
chr5	141337126	rs164076	C	T	21809.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,829:1.00:829
chr5	141337225	rs164077	A	G	17456.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr5	141353045	rs113539536	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr5	141357719	rs66768569	TTGTA	T	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	141364511	rs252099	A	G	7889.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:336,399:0.54:735
chr5	141364637	rs252100	C	T	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr5	141371557	rs10559146	CT	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.745;SOR=1.630;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr5	141382584	rs252114	T	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr5	141387336	rs2232196	G	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:99,82:0.45:181
chr5	141387520	rs2232195	A	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr5	141391532	rs164080	G	A	4717.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:216,240:0.53:456
chr5	141488792	rs9324865	T	C	175.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	141533062	rs449454	A	G	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	141975067	rs34003	A	C	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	141980820	rs34009	G	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	142254679	rs185200	A	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	142259083	rs27779	C	A	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	142283055	rs35292	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr5	142287159	rs36220244	AAGGGT	A	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=41.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	142287517	rs5871829	T	TC	38.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	142311442	rs712176	A	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	142311509	rs712177	T	C	6595.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	142421287	rs34295120	G	GA	1073.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=9.02;ReadPosRankSum=2.409;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:30,89:0.75:119
chr5	142421415	rs2270068	T	G	11653.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr5	142435748	rs6580266	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr5	142500512	rs113801037	C	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:116,94:0.45:210
chr5	142500586	rs35015063	G	A	3263.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:208,173:0.45:381
chr5	142513686	rs246607	A	G	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:100,94:0.48:194
chr5	142593652	rs258819	C	T	2239.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.61;ReadPosRankSum=0.055;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,89:0.98:91
chr5	142595995	rs258821	C	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	142596013	rs258822	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	142601811	rs72399054	TACACACACACAC	T	786.74	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr5	142671092	rs150299999	A	ATTACTTTTCTTTAGCCTAAG	4208.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.71;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	142680344	rs6188	C	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	145144419	rs338887	G	T	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	145176221	rs338898	C	T	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	145197411	rs6870210	C	T	4980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.652;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:343,261:0.43:604
chr5	145198805	rs624380	T	C	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	145199430	rs11293460	AG	A	1379.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.38;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	145199681	rs139755910	TTTTTG	T	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=0.742;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr5	145202461	rs6898776	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.14;ReadPosRankSum=-0.430;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr5	145214538	rs12658784	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	145246085	rs2569006	T	G	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr5	145252312	rs151087704	G	C	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:130,97:0.43:227
chr5	145252574	rs10037373	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr5	145393364	rs758037	C	T	8069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;ClippingRankSum=0.000;DB;DP=882;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=0.166;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:474,401:0.46:875
chr5	145427527	rs1859895	T	A	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:98,96:0.49:194
chr5	145439647	rs2962525	T	C	15910.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr5	145442203	rs1056149	G	C	4933.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:250,239:0.49:489
chr5	145483703	rs2962544	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-1.145;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr5	145512367	rs11321164	TA	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=6.043;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.625;QD=10.24;ReadPosRankSum=0.240;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr5	145515379	rs2963919	C	T	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	145522674	.	T	TTA	58	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=58;QD=34.0;SC=ACAAACTATTTTATATATATA;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=2;WE=145522682;WS=145522664;set=Platypus	GT:AD:AF:DP	1/0:10,2:0.17:12
chr5	145522912	rs2962504	A	G	5941.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,237:1.00:238
chr5	145838440	rs11743333	G	A	11012.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.43;ReadPosRankSum=0.825;SOR=0.577;set=HC	GT:AD:AF:DP	1/1:1,432:1.00:433
chr5	145850459	rs11463725	G	GT	37.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;MQ=62.65;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	145851163	rs141675712	AT	A	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-1.624;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr5	145858010	rs4705359	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:81,34:0.30:115
chr5	145890028	rs4705103	A	G	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	146030055	rs6866598	C	T	6379.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.42;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	146077526	rs6879694	C	T	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=-1.074;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:61,45:0.42:106
chr5	146434047	rs5872003	TA	T	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=0.766;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr5	146434060	rs2400241	C	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=0.609;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:24,24:0.50:48
chr5	146434146	rs720305	C	T	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:155,167:0.52:322
chr5	146435163	rs11958187	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr5	146619206	rs4705132	G	C	2190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=1.545;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:147,118:0.45:265
chr5	146657584	rs6580458	T	C	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	146657838	rs6580459	G	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	146728149	rs10072514	C	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	146728396	rs72831396	C	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr5	146753004	rs4235731	T	C	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr5	146754839	rs10515585	C	G	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr5	146971253	rs7449194	C	T	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	146981164	rs111740872	TCAAAACAAAACAAAA	T	1005.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	147261812	rs3843496	T	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr5	147286054	rs2250145	G	A	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:147,154:0.51:301
chr5	147443589	rs12522603	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:73,78:0.52:151
chr5	147444862	.	T	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-0.943;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr5	147444989	rs9325061	G	A	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,70:0.51:136
chr5	147445023	rs1609851	C	G	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr5	147445108	rs3036741	TCACACA	T	445.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr5	147445124	rs1007979	A	G	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.967;QD=18.15;ReadPosRankSum=-0.200;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr5	147449855	rs1423001	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr5	147450085	rs3752676	C	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr5	147468234	rs7711953	C	G	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:82,91:0.53:173
chr5	147468614	rs10038561	A	G	2299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=4.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=-0.927;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:67,111:0.62:178
chr5	147468971	rs4529181	G	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr5	147475386	rs6892205	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr5	147475488	rs11958432	A	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.581;QD=3.90;ReadPosRankSum=-0.515;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr5	147475513	rs76839946	G	GT	514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.718;QD=6.35;ReadPosRankSum=-0.199;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:60,21:0.26:81
chr5	147475609	rs62388363	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=-0.854;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr5	147477351	rs140268040	T	TTTTAA	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr5	147477551	rs34482796	C	T	4304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-0.617;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:203,215:0.51:418
chr5	147478785	rs1422991	C	T	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	147478981	rs11168021	C	A	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	147479991	rs2303061	C	T	6304.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	147480007	rs2303062	A	G	6706.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.669;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=-0.970;SOR=0.274;set=HC	GT:AD:AF:DP	1/1:1,259:1.00:260
chr5	147480027	rs2303063	G	A	6872.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr5	147480112	rs2303065	T	C	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	147480868	rs2303066	G	A	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	147480955	rs2303067	A	G	2625.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.318;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.694;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.49;ReadPosRankSum=-0.733;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:1,102:0.99:103
chr5	147481018	rs2303068	G	A	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	147481430	rs6896303	A	G	10409.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr5	147484465	rs34473560	GA	G	927.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr5	147486677	rs880687	C	A	10587.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr5	147486774	rs41291431	C	T	12461.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=25.54;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,488:1.00:488
chr5	147486818	rs3036740	CGT	C	11204.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.829;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.181;QD=43.77;ReadPosRankSum=1.503;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:1,255:1.00:256
chr5	147488367	rs2303071	C	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	147493831	.	C	CT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.72;ReadPosRankSum=-0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	147493833	rs35043219	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.85;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	147493871	rs3815735	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	147497871	rs6891892	T	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	147497932	rs3777135	T	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	147498019	rs3777134	G	A	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	147498523	rs3764926	T	C	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	147498652	rs9325073	C	G	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	147498669	rs9325074	G	A	7728.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	147498672	rs12518996	G	A	7679.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	147498763	rs9325075	C	A	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	147499616	rs17704908	C	T	5853.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	147499670	rs33920397	C	T	6649.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr5	147504305	rs3036731	C	CT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=4.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=1.712;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr5	147504315	rs2052537	A	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.26;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	147504557	rs2052536	T	G	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	147505116	rs3764930	G	A	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	147505227	rs2112767	G	A	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	147510776	rs6895434	T	C	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	147510866	rs2400478	T	C	13012.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr5	147585797	.	C	CTCATT	1233.73	.	AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	147585799	.	TAAC	T	1925.73	.	AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	147585805	.	C	T	1246.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	147585806	.	AC	A	1237.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	147593497	rs12186491	C	A	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr5	147691840	rs13168328	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr5	147693826	rs3749690	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:68,57:0.46:125
chr5	147695283	rs3217238	C	CTCA	2134.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:125,115:0.48:240
chr5	147703416	rs1422969	C	T	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:207,195:0.49:402
chr5	147715820	rs6894032	G	T	117.41	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr5	147781732	rs34685718	T	G	3150.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:206,168:0.45:374
chr5	147788798	rs10077690	A	G	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:175,156:0.47:331
chr5	147793971	rs12717973	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.82;ReadPosRankSum=-0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr5	147803557	rs11168047	G	T	2470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-0.740;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:106,123:0.54:229
chr5	147805120	rs10043775	T	C	3363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=1.207;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:203,179:0.47:382
chr5	147812901	rs6861078	T	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.098;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr5	147819366	rs10051223	T	C	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:88,115:0.57:203
chr5	147821469	rs3734120	C	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr5	147856232	rs6580550	T	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr5	147856257	rs11411672	G	GA	554.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr5	147856333	rs7733088	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:100,82:0.45:182
chr5	147856392	rs7715901	A	G	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:129,120:0.48:249
chr5	147856522	rs7733410	G	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr5	147902972	rs2277050	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	147928130	rs13171326	T	C	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr5	148016537	rs17639735	A	G	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:122,94:0.44:216
chr5	148045282	rs1820076	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr5	148206375	rs1801704	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr5	148206440	rs1042713	G	A	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:106,105:0.50:211
chr5	148206473	rs1042714	G	C	3574.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:171,181:0.51:352
chr5	148207447	rs1042719	G	C	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:118,107:0.48:225
chr5	148207633	rs1042720	G	A	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=6.730;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.115;QD=10.45;ReadPosRankSum=2.036;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:80,92:0.53:172
chr5	148207659	rs372621803	AC	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.664;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=7.295;MLEAC=1;MLEAF=0.500;MQ=60.64;MQRankSum=-0.994;QD=0.62;ReadPosRankSum=-0.527;SOR=2.578;set=HC	GT:AD:AF:DP	0/1:52,10:0.16:62
chr5	148207667	rs141761380	C	CCG	1327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=18.101;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=1.237;QD=21.42;ReadPosRankSum=0.777;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:23,39:0.63:62
chr5	148384555	rs71274358	T	TTTTG	1011.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr5	148407708	rs1432794	A	C	5299.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	148521799	rs11744532	T	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr5	148562890	rs6886262	G	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=0.254;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr5	148562981	rs6887628	C	A	2795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-0.178;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:184,148:0.45:332
chr5	148578566	rs2068262	C	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:90,62:0.41:152
chr5	148578636	rs13362048	T	C	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:206,154:0.43:360
chr5	148580025	rs6580602	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:92,39:0.30:131
chr5	148586451	rs5872113	A	AG	813.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	148590423	rs2918281	T	C	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:58,64:0.52:122
chr5	148620451	rs45498700	C	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	148679301	rs171286	C	G	11588.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr5	148682188	rs352341	G	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	148695605	.	C	G	1483.77	.	AC=1;AF=0.500;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	0/1:85,76:0.47:161
chr5	148712150	rs2270682	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.129;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=-0.057;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr5	148725199	rs352347	A	G	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,56:0.53:106
chr5	148725225	rs3842046	G	GC	811.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr5	148737644	rs2291814	G	C	129.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.13;ReadPosRankSum=-0.319;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr5	148742693	rs1693917	A	G	244.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr5	148808390	rs41291957	G	A	335.88	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr5	148989122	rs2400891	C	T	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	148989312	rs7443869	A	G	218.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	148989320	rs7447560	T	C	218.84	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	148997686	rs6579750	A	G	23261.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=924;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.70;ReadPosRankSum=1.761;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:2,903:1.00:905
chr5	149003626	rs113997100	G	A	6601.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:346,338:0.49:684
chr5	149006518	rs147615867	TCAGTGG	T	1313.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	149006640	rs9324624	C	T	9597.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,370:1.00:371
chr5	149006837	rs7732873	A	G	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	149006879	rs7733002	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	149008403	rs1056993	A	G	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	149008521	rs1135093	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	149213324	.	C	T	4115.77	.	AC=1;AF=0.500;AN=2;DP=395;set=Intersection	GT:AD:AF:DP	0/1:179,201:0.53:380
chr5	149216645	rs201352371	A	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr5	149276198	rs13361222	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr5	149276373	rs2244836	T	C	2437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.905;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:165,129:0.44:294
chr5	149276567	rs30818	T	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr5	149278093	rs34656337	TCAGAGA	T	4483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=3.018;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=20.66;ReadPosRankSum=2.525;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:102,115:0.53:217
chr5	149278238	.	T	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.86;ReadPosRankSum=-0.847;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr5	149278258	rs30819	A	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr5	149278856	rs76082232	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr5	149283406	rs251346	C	G	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	149294595	.	CTT	C	290.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.892;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr5	149360877	rs30832	T	C	8720.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr5	149374879	rs3832324	CT	C	14581.73	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr5	149374932	rs10875553	T	C	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr5	149380158	rs3812008	CG	TC	35683.77	.	AC=2;AF=1.00;AN=2;DB;DP=800;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,791:1.00:791
chr5	149406271	rs6579767	C	T	9840.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr5	149406733	rs2304069	G	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	149424966	rs2276983	G	A	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	149427387	rs2043284	T	G	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	149428395	rs216125	C	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	149428424	rs216126	G	C	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	149431223	rs216131	G	A	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	149431259	rs216132	A	G	6505.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	149433596	rs2066934	TG	GA	8659.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	149435608	rs56327604	G	C	5391.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:261,273:0.51:534
chr5	149435759	rs216136	G	A	26193.77	.	AC=2;AF=1.00;AN=2;DB;DP=1032;set=Intersection	GT:AD:AF:DP	1/1:0,1012:1.00:1012
chr5	149437190	rs216138	C	G	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	149438081	.	AG	A	223.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr5	149438083	.	G	C	232.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr5	149440644	rs170037	C	T	6259.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.97;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	149440644	.	CC	TC,TT	722	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=8;MMLQ=26;MQ=60.0;NF=35,19;NR=65,33;PP=657,722;QD=6.91771212547;SC=GCAGGGCATACCCCAAGACCC;SbPval=0.52;Source=Platypus;TC=101;TCF=35;TCR=66;TR=100,52;WE=149440653;WS=149440634;set=Platypus	GT:AF:DP	0/1:0.99:101
chr5	149440645	rs77510451	C	T	1768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=1.219;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:89,87:0.49:176
chr5	149441016	rs11286566	AC	A	7119.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	149447628	rs216150	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	149450132	rs10079250	T	C	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr5	149452793	rs10044553	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-1.694;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr5	149456771	rs2855781	CT	AA	20145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=1084;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.65;ReadPosRankSum=1.321;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:561,519:0.48:1080
chr5	149457678	rs2228422	G	A	5108.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:194,256:0.57:450
chr5	149459558	rs373987352	G	A	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:77,90:0.54:167
chr5	149460553	rs216123	A	G	3988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=2.866;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:137,210:0.61:347
chr5	149495395	rs246388	T	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	149497177	rs246391	T	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	149498151	rs246394	G	A	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	149498871	rs3832325	AG	A	2187.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	149499672	rs246395	T	C	15828.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr5	149501664	rs78436628	C	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr5	149503670	rs2304061	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr5	149504115	rs1077724	A	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr5	149504158	rs1075846	T	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr5	149505306	rs10072056	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-1.112;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr5	149513072	rs2240780	A	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr5	149515074	rs740750	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr5	149516480	rs2240781	C	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,60:0.53:114
chr5	149546426	rs2302274	A	G	2001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=1.901;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:149,113:0.43:262
chr5	149546828	rs2302275	C	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr5	149576233	rs2270145	G	A	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:162,138:0.46:300
chr5	149576273	rs2270146	C	T	6478.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:325,327:0.50:652
chr5	149578999	rs731376	T	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr5	149580819	rs3733680	G	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:81,58:0.42:139
chr5	149582103	rs2240788	C	T	5211.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:235,259:0.52:494
chr5	149583300	rs2240793	T	C	10207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.689;QD=13.78;ReadPosRankSum=1.067;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:435,306:0.41:741
chr5	149583336	rs2240794	T	C	9777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.542;QD=16.46;ReadPosRankSum=0.284;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:322,272:0.46:594
chr5	149583383	rs35380195	G	GGT	1385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=7.222;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.876;QD=10.91;ReadPosRankSum=0.859;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:56,71:0.56:127
chr5	149583449	rs187765008	C	A	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:86,117:0.58:203
chr5	149584341	rs6878880	T	C	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr5	149584863	rs2342283	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=44.09;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	149584870	rs4423986	C	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=53.43;SOR=3.675;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	149584881	rs5024534	G	T	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	149584881	.	GTT	TTC	1643	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=2;HapScore=1;MGOF=56;MMLQ=24;MQ=60.0;NF=30;NR=12;PP=1643;QD=40.3920922586;SC=CCACTTCAGGGTTCGGTACAG;SbPval=0.61;Source=Platypus;TC=43;TCF=30;TCR=13;TR=42;WE=149584891;WS=149584853;set=Platypus	GT:AD:AF:DP	1/1:1,42:0.98:43
chr5	149584883	rs5024533	T	C	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=1.958;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	149584969	rs11428067	A	AG	10449.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	149584981	rs4705425	A	G	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:147,140:0.49:287
chr5	149585025	rs4705426	A	C	12985.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.587;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.110;QD=24.78;ReadPosRankSum=-0.255;SOR=0.266;set=HC	GT:AD:AF:DP	1/1:4,520:0.99:524
chr5	149602608	rs2241694	A	G	17574.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,685:1.00:685
chr5	149602824	rs2241695	C	T	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	149610967	rs139753530	AAAT	A,AAATAAT	1679.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=127;set=Intersection	GT:AF:DP	1/2:0.38,0.53:58
chr5	149624901	rs377736621	GCCT	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-0.379;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:93,14:0.13:107
chr5	149627423	rs7711562	A	G	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:114,116:0.50:230
chr5	149629683	rs4958452	T	C	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr5	149631413	rs2288799	A	G	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:115,106:0.48:221
chr5	149632955	rs7701427	C	T	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:86,64:0.43:150
chr5	149636073	rs10463293	T	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.91;ReadPosRankSum=-1.655;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr5	149636109	rs10463294	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.083;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-0.612;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr5	149644597	rs891938	T	G	20855.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,818:1.00:818
chr5	149677851	rs6579784	A	G	10876.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:2,425:1.00:427
chr5	149737221	rs4565199	T	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	149755592	.	G	T	942.77	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr5	149772280	rs1136103	C	G	2251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.907;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:112,118:0.51:230
chr5	149776232	rs15251	C	T	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:88,63:0.42:151
chr5	149823785	rs2070844	G	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr5	149824067	rs2073472	T	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:102,93:0.48:195
chr5	149824223	rs2070842	T	C	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:163,134:0.45:297
chr5	149824308	rs36146597	G	GC	1789.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr5	149824355	rs13171800	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr5	149826526	rs4841	C	T	4441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.370;QD=8.49;ReadPosRankSum=3.293;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:293,230:0.44:523
chr5	149826572	rs13183077	G	A	2756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-2.195;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:198,149:0.43:347
chr5	149901373	rs10075355	G	C	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr5	149907533	rs2273235	T	G	5573.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:377,292:0.44:669
chr5	149907602	rs2273234	A	G	15259.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr5	149914401	rs2545341	T	C	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:109,96:0.47:205
chr5	149919739	rs1290147	G	C	6122.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:263,304:0.54:567
chr5	149921251	rs2304063	G	C	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:129,119:0.48:248
chr5	149931222	rs6579792	T	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	150028246	.	C	T	6988.77	.	AC=1;AF=0.500;AN=2;DP=773;set=Intersection	GT:AD:AF:DP	0/1:411,344:0.46:755
chr5	150051958	rs194134	T	C	24203.77	.	AC=2;AF=1.00;AN=2;DB;DP=969;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,943:1.00:943
chr5	150072693	rs33410	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr5	150078956	rs252161	A	G	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:157,139:0.47:296
chr5	150121723	rs202007997	C	T	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=1.877;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:94,102:0.52:196
chr5	150407456	rs8177447	T	C	4955.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:268,256:0.49:524
chr5	150410135	rs3924	G	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr5	150413406	rs2233305	A	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr5	150415338	rs2287720	C	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr5	150425467	rs2233299	G	A	6595.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:452,362:0.44:814
chr5	150429563	rs2233294	A	C	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:192,142:0.43:334
chr5	150484787	rs884520	C	T	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:181,168:0.48:349
chr5	150489390	rs1133202	A	G	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	150499080	rs2303023	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	150499102	rs2303024	A	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	150501881	rs13168472	A	C	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:81,79:0.49:160
chr5	150502612	rs41290567	G	A	8684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=894;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-1.525;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:444,441:0.50:885
chr5	150504097	rs70976004	TGAGAGAGAGAGA	T	742.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr5	150506086	rs2303029	A	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:60,56:0.48:116
chr5	150506104	rs374776803	AAC	A	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.809;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.392;QD=8.65;ReadPosRankSum=-2.443;SOR=0.126;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr5	150508875	rs2303031	A	G	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-2.098;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr5	150509258	rs144537590	T	TTTTG	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=-1.554;QD=7.49;ReadPosRankSum=-0.635;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr5	150509262	.	G	GTTTGTTTA	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.00;MQRankSum=2.294;QD=20.99;ReadPosRankSum=0.646;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr5	150516887	rs2303034	G	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.511;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:39,40:0.51:79
chr5	150518358	rs3213802	AG	GA	6332.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;JOINED;set=Intersection	GT:AD:AF:DP	0/1:152,163:0.52:315
chr5	150518435	rs3213804	T	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr5	150518892	rs3214444	GC	G	3944.73	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:181,140:0.44:321
chr5	150518988	rs2228458	G	A	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:250,209:0.46:459
chr5	150519552	rs35144306	AT	A	467.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr5	150519670	rs10040510	T	A	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:152,103:0.40:255
chr5	150562526	rs13184280	A	C	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	150564973	rs2288818	A	C	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.126;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:87,91:0.51:178
chr5	150564975	rs248428	T	C	1822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.036;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:94,90:0.49:184
chr5	150565008	rs248427	C	T	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:133,123:0.48:256
chr5	150565724	rs248426	C	T	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:146,102:0.41:248
chr5	150565770	rs193728	G	A	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	150567049	rs35221501	CA	C	5367.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=36.27;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	150567074	rs36036156	T	TG	1688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.973;QD=15.49;ReadPosRankSum=-0.197;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:54,55:0.50:109
chr5	150567145	rs454130	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr5	150632676	rs2277028	A	G	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr5	150639409	rs153477	A	G	5575.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:427,312:0.42:739
chr5	150639439	rs153478	A	G	5936.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:418,326:0.44:744
chr5	150646647	rs2075782	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr5	150646736	rs6861766	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr5	150646780	rs2075783	A	C	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:106,113:0.52:219
chr5	150647012	rs1048723	A	G	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:160,151:0.49:311
chr5	150696447	rs369907	C	T	7566.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr5	150696498	rs428064	G	A	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:94,103:0.52:197
chr5	150696540	rs431240	C	T	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	150704758	rs246496	A	G	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	150722675	rs2431079	G	A	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	150723806	rs192192	G	A	10779.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr5	150838284	rs35256722	C	G	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=2.183;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:25,34:0.58:59
chr5	150838293	rs35074529	T	C	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.47;SOR=1.854;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	150838603	rs56026426	A	C	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:66,85:0.56:151
chr5	150838636	rs6891599	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr5	150843996	rs415426	T	C	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	150846663	rs78066852	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.057;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr5	150846706	rs76799041	AGCATT	A	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr5	150846865	.	G	GAA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=2.835;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr5	150846880	rs200196527	AAC	A	175.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.377;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr5	150846882	rs61191955	C	A	341.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.180;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr5	150847505	rs441652	T	C	15979.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=42.73;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr5	150847509	rs394736	A	G	15475.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=45.52;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr5	150847554	rs357621	T	C	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	150847574	rs13357451	T	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr5	150847604	rs189615	A	G	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	150848653	rs10709981	TA	T	2776.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:8,153:0.95:161
chr5	150848701	rs357624	A	G	8755.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr5	150848874	rs357625	A	G	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	150848903	rs357626	A	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr5	150853193	rs11279332	CTTTTGCTTTG	C	3663.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	150853412	rs152722	G	C	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr5	150856107	rs165352	T	G	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	150858725	rs165357	G	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.65;ReadPosRankSum=-0.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr5	150886616	rs7723079	G	A	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:64,84:0.57:148
chr5	150886725	rs7723266	G	A	6305.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:281,322:0.53:603
chr5	150886882	rs1105168	G	A	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:188,150:0.44:338
chr5	150887184	rs75548276	G	GAGA	2827.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:60,75:0.56:135
chr5	150889805	rs6870300	A	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,50:0.50:101
chr5	150891663	rs6862750	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr5	150891733	rs2304028	A	G	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:75,92:0.55:167
chr5	150901111	rs3822699	A	G	11434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210;ClippingRankSum=0.000;DB;DP=1282;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=0.416;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:668,599:0.47:1267
chr5	150901261	rs6650971	C	T	5768.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:363,295:0.45:658
chr5	150901300	rs3734046	G	A	6735.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:425,350:0.45:775
chr5	150901613	rs2053028	A	G	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-1.643;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:95,99:0.51:194
chr5	150905485	rs36092108	C	T	2870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=2.181;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:204,157:0.43:361
chr5	150906721	rs80225398	A	G	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr5	150907819	rs11743288	T	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr5	150911317	rs143792947	G	A	4669.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:257,241:0.48:498
chr5	150914184	rs1432643	A	T	3501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=3.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-0.718;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:135,172:0.56:307
chr5	150917545	rs3816007	G	A	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	150923405	rs6892335	A	G	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	150925144	rs3797875	A	G	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:80,101:0.56:181
chr5	150926054	.	C	A	224.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr5	150942919	rs6872614	A	G	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	150942969	rs2304053	G	A	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:103,105:0.50:208
chr5	150943085	rs2304054	G	A	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:168,194:0.54:362
chr5	150945483	rs3734055	C	T	9529.77	.	AC=1;AF=0.500;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	0/1:452,473:0.51:925
chr5	150945699	rs10085060	G	A	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:210,195:0.48:405
chr5	150945862	rs3734057	A	G	5368.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:205,263:0.56:468
chr5	150945931	rs3734058	C	T	6490.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:284,317:0.53:601
chr5	150946132	rs3734059	G	A	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:167,147:0.47:314
chr5	150946436	rs9324700	A	G	3944.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:184,195:0.51:379
chr5	150946773	rs1432862	G	A	2471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=0.491;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:141,130:0.48:271
chr5	150946966	rs1465690	G	A	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr5	150947719	rs3734060	C	T	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:120,124:0.51:244
chr5	150948537	rs1469680	T	C	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	151049404	rs7719521	A	C	4139.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:237,207:0.47:444
chr5	151052659	rs1978707	G	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:116,90:0.44:206
chr5	151138122	rs375250210	A	G	5131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-1.459;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:268,265:0.50:533
chr5	151138211	rs1549921	A	G	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:105,100:0.49:205
chr5	151167380	rs7719617	A	T	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.01;ReadPosRankSum=-0.304;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr5	151167387	rs201380366	A	AC	845.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=-1.444;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:22,27:0.55:49
chr5	151167389	.	GAATATTTTCAATTCATAAAATAAAATTTATGAAT	G	841.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.722;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=4.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.04;ReadPosRankSum=-0.243;SOR=1.589;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr5	151167476	rs36126085	A	ATG	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	151171509	rs2915869	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.278;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=-0.121;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr5	151174605	rs2964569	C	G	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr5	151180451	rs200261823	AT	A	1380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.076;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:114,144:0.56:258
chr5	151236039	rs7725327	A	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr5	151236117	rs7711609	T	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.88;ReadPosRankSum=0.520;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr5	151239290	rs7729026	G	A	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr5	151239306	rs6870491	T	C	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:53,58:0.52:111
chr5	151771673	rs4958303	A	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	151771817	rs1363422	C	T	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	151771838	rs4958531	T	C	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chr5	151771852	rs4958532	G	A	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:76,62:0.45:138
chr5	151772055	rs1895245	G	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:152,119:0.44:271
chr5	151772230	rs1422357	C	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.25;ReadPosRankSum=-1.637;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr5	151775064	rs4958535	C	G	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:94,132:0.58:226
chr5	151777457	rs72791443	T	C	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.739;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=7.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.26;ReadPosRankSum=2.344;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr5	151777466	rs716257	A	G	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.959;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.40;ReadPosRankSum=0.553;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:21,29:0.58:50
chr5	151777597	.	CA	C	3509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DP=485;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.567;QD=7.53;ReadPosRankSum=0.787;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:257,209:0.45:466
chr5	151777789	rs958955	GC	AT	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr5	153029872	rs55981636	T	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr5	153035182	rs41290595	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr5	153372525	rs1057772	G	A	7036.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	153372743	rs6866471	G	A	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	153382072	rs35082504	GTCT	G	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	153406644	rs9324765	C	T	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	153406987	rs6889563	G	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	153413390	rs2578377	C	T	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	153414545	rs34907432	C	CA	1950.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:3,86:0.97:89
chr5	153429459	rs690592	T	C	8740.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr5	153432450	rs11451300	A	AT	3471.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:4,153:0.97:157
chr5	153432733	rs2578386	T	C	9801.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr5	153432970	rs2255493	C	T	5522.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	153570349	rs201222592	C	CCGGGCGGA	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr5	153674536	.	TTGTGTGTG	T,TTG	1887.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=81;set=Intersection	GT:AF:DP	1/2:0.24,0.75:51
chr5	153677361	.	TGA	T,TTCCCCGA	910.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=16;set=Intersection	GT:AF:DP	1/1:1.00:15
chr5	153677362	.	GA	CT	434	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=1;HapScore=3;MGOF=0;MMLQ=26;MQ=60.0;NF=12;NR=0;PP=434;QD=40.6223229052;SC=TCTTTGTACTGAGCAAAAACT;SbPval=1.0;Source=Platypus;TC=17;TCF=15;TCR=2;TR=12;WE=153677371;WS=153677351;set=Platypus	GT:AD:AF:DP	1/1:5,12:0.71:17
chr5	153677363	.	A	ATCCCCCT	910.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=60.72;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	153709043	rs1004976	G	A	5969.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	153795274	rs11321246	TA	T	535.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr5	153835378	rs1007404	C	G	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr5	153856974	rs1846966	C	G	10771.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr5	153975576	rs936581	G	A	4479.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:297,238:0.44:535
chr5	154065382	rs33982250	TA	T	1119.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=2.349;QD=10.09;ReadPosRankSum=1.225;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:30,81:0.73:111
chr5	154065383	rs75538180	A	T	93.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.925;QD=0.84;ReadPosRankSum=-1.314;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:90,21:0.19:111
chr5	154065495	rs11958012	GG	AC	18040.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr5	154135386	rs78112077	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr5	154135802	rs115865323	C	T	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:132,131:0.50:263
chr5	154193735	rs863649	A	G	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	154209207	rs2560040	A	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:170,104:0.38:274
chr5	154217840	rs112016466	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.795;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr5	154247297	rs35471086	TAA	T	1122.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr5	154268902	rs816739	C	T	6129.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr5	154271391	rs702743	A	C	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	154271948	rs816736	G	A	15202.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:1,595:1.00:596
chr5	154275962	rs816747	G	A	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr5	154278888	rs816740	C	T	7432.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	154282514	.	C	T	657.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr5	154282551	rs10515726	T	C	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:81,85:0.51:166
chr5	154287016	rs76813157	T	TGAAAAAAAA	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	154287115	rs6580119	T	C	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	154291219	rs6580121	A	G	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	154291409	rs1974777	C	T	7070.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr5	154291496	rs1974776	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	154296795	rs348735	A	C	225.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.48;ReadPosRankSum=-0.831;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr5	154300940	rs348739	A	C	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	154306972	rs2258437	T	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	154308282	rs2644743	C	T	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	154308307	rs1035368	G	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	154311235	rs2644744	T	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	154311576	rs2544866	T	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	154346259	rs14922	A	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=1.195;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr5	154346325	rs7965	G	A	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:56,67:0.54:123
chr5	155756414	rs11740347	G	A	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-1.391;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:42,49:0.54:91
chr5	155771579	rs1801193	T	C	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=6.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.012;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:68,60:0.47:128
chr5	155771773	rs4434364	A	G	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr5	155820582	rs62380729	G	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr5	155820696	rs62380730	A	G	3693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.178;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:223,198:0.47:421
chr5	155820716	rs10475703	C	A	4251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=1.107;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:245,222:0.48:467
chr5	156074654	rs141437738	TAAATTGA	T	1203.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	156376703	rs6873053	A	G	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	156381370	rs7724832	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr5	156390297	rs6882076	T	C	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:128,121:0.49:249
chr5	156459856	rs34670839	C	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=2.291;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr5	156464212	rs4704837	T	G	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr5	156464242	rs2036402	T	C	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:106,94:0.47:200
chr5	156469452	.	CAAAA	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=0.589;QD=12.86;ReadPosRankSum=-0.409;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr5	156479323	rs1553318	G	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr5	156479424	rs1553317	A	C	8693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.163;QD=16.13;ReadPosRankSum=-0.040;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:309,230:0.43:539
chr5	156479426	rs12522248	T	C	8693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.819;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.177;QD=15.84;ReadPosRankSum=0.469;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:318,231:0.42:549
chr5	156479509	rs1553316	A	G	8795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=1039;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.124;QD=8.48;ReadPosRankSum=1.753;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:568,469:0.45:1037
chr5	156479557	rs141023871	GTTGGAACAGTCGTCA	G	6159.73	.	AC=1;AF=0.500;AN=2;DB;DP=1026;set=Intersection	GT:AD:AF:DP	0/1:558,344:0.38:902
chr5	156482099	rs2270925	T	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-0.289;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	156482101	rs2270924	A	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-0.174;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	156482296	rs56084311	C	G	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr5	156482459	rs1809941	G	T	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:200,146:0.42:346
chr5	156525920	rs371359315	AAG	A	561.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,30:0.34:88
chr5	156589585	rs31208	A	G	14182.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:1,560:1.00:561
chr5	156590355	rs31220	A	G	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr5	156640563	rs143962660	C	CT	776.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.155;QD=7.13;ReadPosRankSum=1.630;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:58,51:0.47:109
chr5	156644775	rs5872504	T	TC	3570.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	156667280	rs6860090	G	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,55:0.42:130
chr5	156670916	rs66943334	C	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.424;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr5	156679576	rs27341	T	C	3708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=2.423;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:181,192:0.51:373
chr5	156712197	rs2288069	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr5	156715652	rs11747736	G	C	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-0.137;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:123,68:0.36:191
chr5	156721863	rs5872508	T	TC	11770.73	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr5	156734632	rs529619	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr5	156734644	.	G	GGTGTGTGTGT	613	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=26;MQ=59.98;NF=3;NR=9;PP=613;QD=51.5833333333;SC=GTCTCTACAGGGTGTGTGTGT;SbPval=0.73;Source=Platypus;TC=20;TCF=6;TCR=14;TR=12;WE=156734653;WS=156734622;set=Platypus	GT:AD:AF:DP	1/0:8,12:0.60:20
chr5	156734665	.	ATG	A	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.353;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:42,8:0.16:50
chr5	156736983	rs2288070	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr5	156741583	rs895309	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	156742186	rs6897056	G	A	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	156747584	rs7730231	C	T	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr5	156747614	rs6555939	G	T	10238.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr5	156747632	rs2863198	C	G	11877.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr5	156747669	rs1823035	A	G	16609.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.743;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=2.121;SOR=0.127;set=HC	GT:AD:AF:DP	1/1:2,656:1.00:658
chr5	156750834	rs34143712	G	GA	1362.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=19.47;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:2,68:0.97:70
chr5	156753284	rs2289850	T	C	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:107,123:0.53:230
chr5	156760214	rs13181919	C	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr5	156760799	rs1900158	G	A	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	156760842	rs1900157	T	C	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:71,44:0.38:115
chr5	156761018	rs1900156	G	A	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:155,156:0.50:311
chr5	156761070	rs12656549	C	T	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	156762071	rs10077387	A	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	156762245	rs9313545	A	G	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	156763650	rs10036098	T	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	156763684	rs10043769	C	T	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	156763823	rs10038052	G	A	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	156763921	rs11134699	C	A	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	156765981	rs3734026	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	156766037	rs3734027	A	G	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	156766273	rs3734028	G	A	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	156770133	rs10037485	C	T	6863.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:316,337:0.52:653
chr5	156770209	rs10214194	G	A	4297.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:308,219:0.42:527
chr5	156770653	rs13182147	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr5	156770688	rs10061992	G	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	156786168	rs2289851	C	A	2055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.685;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:116,106:0.48:222
chr5	156811670	rs4305634	G	A	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr5	156811673	rs112263751	C	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr5	156816522	rs889035	G	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:76,59:0.44:135
chr5	156887133	rs1105282	A	G	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:66,71:0.52:137
chr5	156898690	rs6860507	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=1.728;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr5	156898899	rs4704869	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	156898967	rs6879450	G	A	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr5	156899290	rs9313607	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr5	156899869	rs4704870	T	C	30220.77	.	AC=2;AF=1.00;AN=2;DB;DP=1177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,1169:1.00:1169
chr5	156900000	rs62388499	C	T	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:77,74:0.49:151
chr5	156904633	rs10404	C	T	1925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-2.521;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:103,102:0.50:205
chr5	156916037	rs10674185	C	CAAAAAGAA	839.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr5	156918987	rs11466790	G	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:62,70:0.53:132
chr5	156921955	rs11466782	A	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr5	156926777	rs12522418	A	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=1.111;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr5	156936364	rs1422795	T	C	1643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.818;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:57,82:0.59:139
chr5	156936549	rs1422794	G	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	156946049	rs2042247	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr5	156957741	rs3822696	C	T	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.74;ReadPosRankSum=1.302;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr5	156991508	rs11134819	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-1.659;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr5	156997785	rs11746737	C	T	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	156999340	rs7719224	C	T	2392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=-0.562;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:195,134:0.41:329
chr5	157002552	rs6556092	A	G	6881.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	157075943	rs72284585	TAC	T	993.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr5	157094771	.	TACAC	T,TAC	5430.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=1.457;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.312;QD=23.11;ReadPosRankSum=0.489;SOR=1.216;set=HC	GT:AD:AF:DP	1/2:24,120,91:0.51,0.39:235
chr5	157094779	.	C	T	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DP=373;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-1.451;QD=4.22;ReadPosRankSum=5.512;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:211,88:0.29:299
chr5	157102063	rs10051782	G	A	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:129,103:0.44:232
chr5	157102159	rs10051838	G	A	2583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=1.321;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:194,142:0.42:336
chr5	157102185	rs6884959	A	G	2174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-0.805;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:156,117:0.43:273
chr5	157106785	rs6556177	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:77,83:0.52:160
chr5	157158326	rs2270821	G	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr5	157158372	rs2270820	T	C	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr5	157158414	rs2270819	C	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr5	157158439	rs2270818	C	A	2380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=3.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.236;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:123,125:0.50:248
chr5	157158638	.	C	A	1664.77	.	AC=1;AF=0.500;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr5	157164889	rs2270813	T	C	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=1.487;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:31,44:0.59:75
chr5	157164962	rs2270812	T	C	2229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-1.263;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:91,107:0.54:198
chr5	157165597	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.404;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:53,13:0.20:66
chr5	157170986	rs2279771	G	A	4222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=3.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-1.652;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:259,209:0.45:468
chr5	157178592	rs56398160	TA	T	2249.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	157215027	rs11955293	C	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=1.672;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr5	157230532	rs2270810	C	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr5	157232764	rs10515755	C	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr5	157236505	rs60217753	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.043;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr5	157241305	rs6882224	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr5	157241367	rs140043015	TA	T	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr5	157246482	rs3777062	C	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr5	157247160	rs254673	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=1.177;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr5	158140222	rs3734105	G	A	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr5	158511794	.	G	GA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-0.906;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:129,29:0.18:158
chr5	158522577	rs12659540	C	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr5	158523584	rs6556385	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	158526534	rs5872586	TA	T,TAA	1688.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.730;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.67;MQRankSum=2.398;QD=8.04;ReadPosRankSum=-0.485;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:39,92,79:0.44,0.38:210
chr5	158588633	rs139682876	GAAAAA	G	1538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.823;QD=18.32;ReadPosRankSum=1.020;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:39,45:0.54:84
chr5	158588749	rs17056583	G	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.80;ReadPosRankSum=-1.691;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr5	158600921	rs2060211	C	G	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-0.880;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:49,38:0.44:87
chr5	158697481	rs3734104	C	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	158710419	rs1433046	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	159437466	rs961265	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr5	159463687	rs75792355	C	T	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr5	159478089	.	GTTT	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=-0.527;QD=3.27;ReadPosRankSum=1.490;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr5	159492218	rs189671674	C	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:69,99:0.59:168
chr5	159640652	rs6556482	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr5	159661754	rs60865693	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:84,74:0.47:158
chr5	159665523	rs10071756	C	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=0.090;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr5	159665527	rs10056227	G	A	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=0.056;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr5	159665534	rs10079413	A	G	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-0.844;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr5	159665599	rs2277954	G	A	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:106,69:0.39:175
chr5	159665726	rs10071871	C	T	4657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=1.086;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:178,132:0.43:310
chr5	159665733	rs2277953	C	T	4363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=2.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=2.503;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:165,117:0.41:282
chr5	159707993	rs59603436	T	C	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	159766379	rs13360090	C	A	375.88	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;MQRankSum=0.632;QD=34.17;ReadPosRankSum=-0.318;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr5	159766380	rs61666605	A	AC	366.84	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;MQRankSum=0.632;QD=33.35;ReadPosRankSum=-0.477;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr5	159776637	rs10053189	C	T	6016.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:344,312:0.48:656
chr5	159831664	rs2961939	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr5	159831736	.	G	GA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.856;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr5	159831803	rs2961940	A	G	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-0.680;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:121,97:0.44:218
chr5	159832250	rs2910182	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr5	159833355	rs36082303	A	AT	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.000;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr5	159835658	rs2961944	A	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=0.034;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:63,31:0.33:94
chr5	159839530	.	T	TAAAAAAA	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.102;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr5	159840688	rs2961949	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr5	159842465	rs2910190	A	G	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	159849586	rs1895320	A	G	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,62:0.56:110
chr5	159849991	rs2910200	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr5	159851211	rs2910203	G	C	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	159912418	rs2910164	C	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	159992655	rs3812005	T	C	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:126,115:0.48:241
chr5	159992697	rs4921302	C	T	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:131,115:0.47:246
chr5	159992751	rs4921150	A	G	4401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=0.797;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:137,129:0.48:266
chr5	159992754	rs3812006	T	G	4991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.05;ReadPosRankSum=0.607;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:133,129:0.49:262
chr5	159996390	rs7709677	T	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.46;ReadPosRankSum=0.425;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr5	160043071	rs4921308	C	A	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	160043108	rs113179038	A	AT	339.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.57;MQRankSum=0.530;QD=16.18;ReadPosRankSum=-0.636;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr5	160043109	rs17052845	C	T	1174.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.67;QD=36.71;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	160044855	rs1363199	G	A	7381.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr5	160047265	rs6862674	C	G	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	160047524	.	C	T	4421.77	.	AC=1;AF=0.500;AN=2;DP=449;set=Intersection	GT:AD:AF:DP	0/1:215,221:0.51:436
chr5	160049355	rs2032804	C	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	160097429	rs3828604	T	C	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr5	160097453	rs1990888	A	C	6275.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr5	160097496	rs958912	A	G	7597.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr5	160097632	rs958911	G	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	160212520	rs13165640	G	T	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr5	160212590	rs13190543	T	C	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr5	160721319	rs2229944	G	A	3426.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:138,163:0.54:301
chr5	160972443	rs70990788	T	TA	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.069;QD=8.69;ReadPosRankSum=1.216;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr5	161116903	rs4921402	C	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	161119071	rs12522663	G	T	12837.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr5	161128761	rs4277944	C	G	7211.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	161302728	rs4260711	G	A	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	161318132	rs10051659	A	G	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	161322652	.	G	GT	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.444;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:119,32:0.21:151
chr5	161494990	.	GA	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=1.859;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:177,41:0.19:218
chr5	161522556	rs11135176	C	T	2631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.433;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:179,143:0.44:322
chr5	161529571	rs211035	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	161569430	rs12520992	A	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr5	162866548	rs299322	T	C	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=1.344;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:44,45:0.51:89
chr5	162866616	rs2069343	T	TG	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.05;ReadPosRankSum=1.960;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr5	162884145	rs34746227	G	GT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=-0.103;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr5	162887650	rs2303076	G	A	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:96,109:0.53:205
chr5	162890953	rs380101	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	162896650	rs299284	C	T	2588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-2.187;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:128,135:0.51:263
chr5	162896856	rs299283	T	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr5	162898565	rs169920	G	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.86;ReadPosRankSum=-0.755;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr5	162902516	rs299290	T	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-0.247;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr5	162902707	rs299291	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr5	162905580	rs13183712	G	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr5	162909716	rs299295	C	T	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:227,157:0.41:384
chr5	162909955	rs5872824	AG	A	66.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr5	162910199	rs184181	G	C	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:134,115:0.46:249
chr5	162932822	rs299299	T	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr5	162938940	rs11307015	GT	G	691.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr5	162940739	rs964945	G	A	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	162940999	rs11546512	A	G	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:115,107:0.48:222
chr5	162944709	rs7733775	A	G	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:193,142:0.42:335
chr5	167182055	rs1862875	G	A	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	167303239	rs1592800	G	A	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:153,115:0.43:268
chr5	167303317	rs1862198	G	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	167420255	rs17069526	T	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr5	167489049	rs36064507	C	CTT	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.55;ReadPosRankSum=0.140;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr5	167554106	rs1560650	G	A	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	167566600	rs1432822	T	A	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	167576239	rs10040595	A	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr5	167576513	rs35438448	T	TG	4898.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	167589932	rs1560649	G	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr5	167622107	rs1472355	G	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr5	167653364	rs3733985	T	C	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:65,73:0.53:138
chr5	167653394	rs3733986	A	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr5	167654788	rs11134494	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.695;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr5	167675392	rs12189266	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr5	167689296	rs17632540	C	T	4607.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:196,232:0.54:428
chr5	167798585	rs2287703	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	167824840	rs10064053	T	C	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:68,100:0.60:168
chr5	167824920	rs10056086	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr5	167833397	rs79808995	C	T	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:146,124:0.46:270
chr5	167835539	rs17551608	C	T	4908.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:364,263:0.42:627
chr5	167835766	rs6887919	T	C	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	167836809	rs73392739	G	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	167837017	rs113311252	TA	T	5570.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=-7.837;QD=25.09;ReadPosRankSum=-1.582;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,220:0.99:222
chr5	167837104	rs17070132	T	C	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	167837202	rs888888	C	T	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	167850748	rs12054944	A	G	6968.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:350,345:0.50:695
chr5	167851168	rs4976606	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr5	167855197	rs7735281	T	C	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr5	167855568	rs3733982	T	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=1.556;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr5	167858371	rs3822660	GT	TG	14590.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;JOINED;set=Intersection	GT:AD:AF:DP	0/1:382,375:0.50:757
chr5	167858462	rs376809293	TCTGGCTGGCTGGCTGGCTGGCTGGCTGG	TCTGGCTGGCTGGCTGGCTGG,T	3701.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=254;set=Intersection	GT:AF:DP	1/1:1.00:82
chr5	167868779	rs3733981	A	G	9741.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr5	167868809	rs3733980	C	T	7120.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr5	167868930	rs3948557	G	A	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	167881029	rs111457550	TGGA	T	3643.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	167892019	rs2305722	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr5	167894984	rs2305724	C	T	9303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.162;ClippingRankSum=0.000;DB;DP=950;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=0.003;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:486,462:0.49:948
chr5	167913510	rs244903	G	A	3625.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:238,193:0.45:431
chr5	167913603	rs193466	C	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:97,70:0.42:167
chr5	167913661	rs35439881	CAG	C	698.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr5	167919623	rs184957	T	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.808;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-1.206;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr5	167921047	rs2432642	C	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr5	167933673	rs34318878	C	CT	574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-0.442;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,38:0.53:72
chr5	167943827	rs653568	G	A	9467.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.59;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr5	167944025	rs35717210	C	CT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-1.134;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr5	167956362	rs1870053	C	G	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.546;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:91,73:0.45:164
chr5	168098463	rs292486	A	G	4080.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:242,206:0.46:448
chr5	168149208	.	C	T	2929.77	.	AC=1;AF=0.500;AN=2;DP=308;set=Intersection	GT:AD:AF:DP	0/1:156,148:0.49:304
chr5	168212951	rs891921	A	G	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr5	168213007	rs2292143	G	A	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:60,69:0.53:129
chr5	168233413	rs3797716	G	A	5183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.357;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.167;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:271,259:0.49:530
chr5	168244242	.	TGTGGGAGCTCATGG	T	3110.73	.	AC=1;AF=0.500;AN=2;DP=216;set=Intersection	GT:AD:AF:DP	0/1:121,86:0.42:207
chr5	168244506	rs35712765	G	GA	860.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr5	168250350	rs924875	C	G	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,84:0.47:180
chr5	168250429	rs1875977	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr5	168620435	rs11744813	C	A	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=1.693;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:51,57:0.53:108
chr5	168620720	rs79192318	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr5	168671698	rs10063591	A	T	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:119,94:0.44:213
chr5	168690612	rs62376934	A	G	7179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=-0.544;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:209,191:0.48:400
chr5	168690635	rs62376935	C	T	8519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=1.327;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:330,271:0.45:601
chr5	169021610	rs4493692	C	T	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	169023686	rs144297297	G	A	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:128,103:0.45:231
chr5	169028481	rs3797713	T	C	11929.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,465:1.00:465
chr5	169031150	rs3777084	T	C	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	169031218	rs2042248	G	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	169097474	rs2306564	G	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=1.755;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr5	169097940	rs2306565	G	A	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr5	169098265	rs12656761	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr5	169101599	rs2244445	C	T	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.584;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:46,60:0.57:106
chr5	169126326	rs264847	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr5	169126349	rs2306562	A	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr5	169127097	rs2112703	C	A	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:168,141:0.46:309
chr5	169127270	rs2161405	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.513;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr5	169127276	rs264845	A	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	169129284	rs2306560	G	A	1887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.878;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:103,100:0.49:203
chr5	169129495	rs3816764	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr5	169138899	.	T	C	246.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr5	169145605	rs79390718	C	T	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr5	169145648	rs80250373	A	T	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:101,102:0.50:203
chr5	169174484	rs13155521	A	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=1.079;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:81,52:0.39:133
chr5	169267589	rs113470914	C	CGAT	480.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr5	169267784	rs261623	G	A	7362.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	169310213	rs17646221	A	C	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr5	169310606	rs145002054	A	T	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:127,106:0.45:233
chr5	169361595	rs259897	A	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:67,51:0.43:118
chr5	169361660	rs259898	C	G	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:207,172:0.45:379
chr5	169361685	rs259899	T	G	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:222,187:0.46:409
chr5	169361830	rs259900	G	A	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr5	169361860	rs259901	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr5	169410025	rs183102859	A	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:72,34:0.32:106
chr5	169422920	rs2059110	A	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	169435880	rs10056324	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr5	169454831	rs13175232	G	A	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.47;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	169454833	rs13157227	T	C	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=1.041;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	169454941	rs9791113	C	G	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr5	169461399	rs3763047	G	A	21351.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:0,815:1.00:815
chr5	169461547	rs3763048	C	T	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	169468243	rs2270895	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	169468929	rs2270897	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	169472765	rs6884561	C	G	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	169474325	rs905155	A	C	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	169496051	rs6868503	T	C	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:85,81:0.49:166
chr5	169504743	rs1045168	T	C	8181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;ClippingRankSum=0.000;DB;DP=938;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-2.008;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:512,418:0.45:930
chr5	169504944	rs79354516	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr5	169507067	rs9885452	A	G	3119.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:163,160:0.50:323
chr5	169509929	rs55803405	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr5	169535522	rs10063424	T	C	9127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=1009;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-1.373;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:511,482:0.49:993
chr5	169675693	rs80044664	AT	A	8529.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	169679354	rs1546451	C	T	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	169679947	rs6880961	C	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	169689604	rs395407	G	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	169695446	rs2292254	C	T	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=1.280;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:85,61:0.42:146
chr5	169695611	rs366122	C	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=0.494;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr5	169697707	rs315745	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr5	169698028	rs315744	A	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr5	169702390	rs2271146	C	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,63:0.55:115
chr5	169910084	rs4867968	G	T	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=0.791;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:69,54:0.44:123
chr5	170145584	rs6555913	G	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr5	170149573	rs2277952	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr5	170149608	rs139602463	A	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr5	170149674	rs12514966	A	T	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:130,116:0.47:246
chr5	170159997	rs17650650	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr5	170160749	rs4868018	G	A	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:68,78:0.53:146
chr5	170162666	rs1363712	T	C	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:47,66:0.58:113
chr5	170221185	rs6884917	A	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr5	170221379	rs58100877	CAA	C	555.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.915;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:39,36:0.48:75
chr5	170237090	rs6555921	T	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-0.692;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr5	170238904	rs3805458	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr5	170239112	rs1063310	C	A	5772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.827;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:337,295:0.47:632
chr5	170288922	rs11749349	A	G	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-1.796;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr5	170289221	rs10475962	T	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.761;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr5	170323258	rs2287893	A	G	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr5	170336614	rs1833596	G	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr5	170341326	rs34458065	TTA	T	312.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr5	170380523	rs930891	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr5	170395512	rs2879366	A	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr5	170395820	rs11134672	G	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-0.216;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr5	170395885	rs2446049	T	C	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	170610273	rs6555936	G	A	1639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=1.584;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:101,87:0.46:188
chr5	170626735	rs35724654	A	G	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr5	170640827	rs4867648	C	A	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:79,74:0.48:153
chr5	170720755	rs2914330	T	A	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	170736824	rs117020618	C	T	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:146,165:0.53:311
chr5	170813951	.	C	CT	36	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=36;QD=39.5;SC=GCTGGGGTGCCTCGGAGTTTG;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=170813959;WS=170813941;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr5	170815125	rs2071276	G	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.867;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:16,34:0.68:50
chr5	170818897	rs3830032	A	G	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=0.097;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr5	170818906	rs3830033	T	A	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.42;ReadPosRankSum=0.553;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr5	170818964	rs138910433	G	GGT	515.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr5	170818969	rs3830034	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr5	170819887	rs3830035	G	A	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:125,130:0.51:255
chr5	170827115	rs6555952	C	A	4730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=-0.193;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:169,131:0.44:300
chr5	170827118	rs6555953	A	G	4560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=0.627;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:165,123:0.43:288
chr5	170847555	rs6555955	T	C	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	170876364	.	C	CGTGTGTGTGTGT	496.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.39;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	171200659	rs27947	T	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr5	171200997	rs26400	C	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr5	171201013	rs113923411	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr5	171217371	rs11950253	G	A	4042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-1.573;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:150,198:0.57:348
chr5	171433375	rs201466110	GC	G	10039.73	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:332,323:0.49:655
chr5	171472417	rs4867662	A	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr5	171472575	rs4868136	G	A	3104.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:141,159:0.53:300
chr5	171480055	rs4569891	G	A	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	171484631	rs13157965	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-1.771;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr5	171520972	rs377387017	AAT	A	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,6:0.17:35
chr5	171523436	rs4868141	G	A	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:108,151:0.58:259
chr5	171533629	rs2306963	A	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	171533656	rs2306962	C	T	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	171554473	rs2279514	G	A	8076.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr5	171621408	rs35441810	A	AT	821.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.11;ReadPosRankSum=0.213;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:17,34:0.67:51
chr5	171621430	rs6862632	A	G	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-0.392;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr5	171621440	rs6862640	A	G	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=0.148;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr5	171627649	rs200613862	T	C	3041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=-2.072;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:202,164:0.45:366
chr5	171627773	rs2306959	G	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr5	171630197	rs201583078	T	TTTTC	530.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr5	171630204	rs372914830	CACCCT	C	1165.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr5	171760544	rs35951290	TA	T	217.50	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-1.529;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr5	171760546	rs3204110	A	T	193.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-1.796;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr5	171760569	rs12033	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	171774363	rs17074690	T	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:101,71:0.41:172
chr5	171785702	rs17703000	A	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr5	171785892	rs2569232	A	G	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	171786049	rs75578956	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr5	171800897	rs2731717	A	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:65,65:0.50:130
chr5	171808930	rs2731722	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr5	171849289	rs6873315	A	G	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	171849471	rs17074773	G	A	6638.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:282,334:0.54:616
chr5	172113235	rs747829	C	T	7055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=2.072;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:469,378:0.45:847
chr5	172196711	rs2431663	G	T	12308.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:3,486:0.99:489
chr5	172261462	rs35566639	G	A	6475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.980;QD=10.20;ReadPosRankSum=1.330;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:310,325:0.51:635
chr5	172261489	rs35768025	C	A	5092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.962;QD=10.54;ReadPosRankSum=-2.592;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:231,252:0.52:483
chr5	172261538	rs78078909	C	A	1983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.057;QD=9.27;ReadPosRankSum=1.981;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:112,102:0.48:214
chr5	172261583	rs111773832	GC	G,GCCC	1491.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;QD=26.17;SOR=1.931;set=HC	GT:AD:AF:DP	1/2:0,38,19:0.67,0.33:57
chr5	172261593	rs63376061	T	C	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.646;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.670;QD=11.31;ReadPosRankSum=-0.153;SOR=1.463;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr5	172294194	rs793027	G	T	12514.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr5	172336616	rs2302957	C	T	4555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-0.432;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:234,226:0.49:460
chr5	172347440	rs13187960	G	A	8208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-1.164;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:331,409:0.55:740
chr5	172395664	rs11749686	T	C	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:159,164:0.51:323
chr5	172396394	rs505788	C	T	9215.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.45;QD=25.53;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr5	172421760	rs11296906	AT	A	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=0.499;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:24,39:0.62:63
chr5	172494981	rs582067	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr5	172507828	rs147330284	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.130;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.739;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr5	172512686	rs671387	C	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-1.646;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:34,40:0.54:74
chr5	172550204	rs1129146	C	T	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:114,91:0.44:205
chr5	172561292	.	TAC	T	85.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.12;ReadPosRankSum=0.468;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr5	172561294	rs2544581	C	T	168.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.05;ReadPosRankSum=-0.196;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr5	172561296	.	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=1.602;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr5	172573767	rs29798	T	C	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	172578549	rs374928255	AT	A	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.056;QD=5.93;ReadPosRankSum=1.722;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:28,52:0.65:80
chr5	172585927	rs5745160	TC	T	7062.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=3.609;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.150;QD=34.96;ReadPosRankSum=1.673;SOR=0.672;set=HC	GT:AD:AF:DP	1/1:1,201:1.00:202
chr5	172588027	rs255303	G	T	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	172660508	.	CA	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.277;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr5	172660527	rs55880439	T	A	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.920;QD=9.74;ReadPosRankSum=0.092;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:39,35:0.47:74
chr5	172662024	rs2277923	T	C	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:131,96:0.42:227
chr5	172745269	rs67125584	A	AAGAG	476.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr5	173035214	rs112654016	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-2.180;QD=0.85;ReadPosRankSum=0.416;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:40,8:0.17:48
chr5	173035493	rs258860	A	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	173036257	rs77014290	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=13.887;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-3.006;QD=1.50;ReadPosRankSum=-5.383;SOR=1.499;set=HC	GT:AD:AF:DP	0/1:86,19:0.18:105
chr5	173036394	rs72822197	C	T	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-7.038;QD=2.60;ReadPosRankSum=0.635;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:444,125:0.22:569
chr5	173036437	.	C	CTGAACCACACTCTGCCTCAAACCATTTCGCAATTGGTTTTTGTTCATTGTAGGATTCCATTCCTG	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.112;ClippingRankSum=0.000;DP=625;ExcessHet=3.0103;FS=35.573;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-9.418;QD=0.56;ReadPosRankSum=1.734;SOR=3.998;set=HC	GT:AD:AF:DP	0/1:526,48:0.08:574
chr5	173316729	rs359467	G	A	2730.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:174,142:0.45:316
chr5	173380346	rs969518	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr5	173416191	rs72814721	C	T	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	173416365	rs61730190	C	A	7915.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	173493014	rs75577256	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr5	173527846	rs6881757	T	C	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:162,120:0.43:282
chr5	173534877	rs4457100	A	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	174152100	rs2048152	G	A	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.161;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:104,88:0.46:192
chr5	174156168	rs4242182	T	C	6650.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:341,340:0.50:681
chr5	174178697	rs960743	C	G	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:146,156:0.52:302
chr5	174178774	rs7709117	G	A	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	174868700	rs686	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr5	174868840	rs155417	T	C	8019.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr5	174870150	rs4532	C	T	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:101,100:0.50:201
chr5	174943551	rs3215174	GA	G	977.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	175110779	rs1800689	G	A	7258.77	.	AC=1;AF=0.500;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	0/1:321,357:0.53:678
chr5	175395361	.	C	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.537;MLEAC=1;MLEAF=0.500;MQ=46.98;MQRankSum=-3.773;QD=1.56;ReadPosRankSum=-0.945;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr5	175511992	rs62389230	C	T	8697.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr5	175523645	rs200150138	GC	G	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-7.729;QD=3.28;ReadPosRankSum=-2.539;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr5	175528527	rs116633144	A	T	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.02;QD=23.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	175530166	rs146119027	G	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.500;MQ=46.58;MQRankSum=-6.379;QD=3.40;ReadPosRankSum=-1.093;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:141,42:0.23:183
chr5	175530214	rs200276266	C	T	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=47.82;MQRankSum=-4.551;QD=3.26;ReadPosRankSum=-0.747;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:520,175:0.25:695
chr5	175665427	rs70991519	G	GC	188.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.72;QD=31.46;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	175792605	rs2303667	G	C	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=1.142;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	175793717	rs3815898	C	T	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	175811094	rs56989856	C	CGT	24378.73	.	AC=2;AF=1.00;AN=2;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=39.70;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,614:1.00:614
chr5	175843461	rs33956988	CG	C	2175.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	175915835	rs2963667	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	175923431	rs2963670	G	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	175927262	rs377249587	CAG	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.921;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:96,20:0.17:116
chr5	175933691	rs113700453	TGTGTGTGC	T	1228.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.01;QD=42.37;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	175956271	rs890835	A	C	14944.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr5	175956516	rs2241585	G	A	10963.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr5	175957238	rs62402556	A	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.90;QD=40.93;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	175957241	rs61430626	A	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.63;QD=46.38;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	175957271	rs62402558	G	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	175992258	rs6556275	A	G	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	175992519	rs4523018	T	A	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	175994173	rs11392917	C	CT	933.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=11.53;ReadPosRankSum=0.164;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:17,64:0.79:81
chr5	175995935	rs10056130	C	T	15103.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:1,579:1.00:580
chr5	176001975	rs1078450	T	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	176002144	rs4242200	A	C	12382.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr5	176002873	rs3762969	C	T	13611.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr5	176002926	rs3762968	C	A	15897.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:1,612:1.00:613
chr5	176004312	rs11749537	A	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	176004476	rs11134982	T	C	9247.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr5	176004846	rs1565149	C	T	7689.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr5	176004866	rs35146200	A	AGT	4737.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:6,136:0.96:142
chr5	176004903	rs11747451	T	C	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	176005175	rs1565150	A	C	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.36;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	176005184	rs1565151	G	A	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	176005477	rs2358747	C	T	15243.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr5	176008238	rs4867840	G	T	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	176011264	rs752139	T	C	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	176011579	rs752138	T	C	9842.77	.	AC=1;AF=0.500;AN=2;DB;DP=942;set=Intersection	GT:AD:AF:DP	0/1:429,500:0.54:929
chr5	176011889	rs4868660	G	A	9716.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr5	176017549	rs4868662	C	T	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	176018545	rs11134984	G	A	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	176024880	rs4868663	C	T	11407.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr5	176025938	rs6556276	T	C	10309.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr5	176053336	rs72322414	GGTGT	G,GGT	1799.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.073;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.03;ReadPosRankSum=0.985;SOR=1.402;set=HC	GT:AD:AF:DP	1/2:4,41,17:0.66,0.27:62
chr5	176053645	rs2291441	C	G	3837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-1.020;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:315,215:0.41:530
chr5	176056529	rs4868669	A	G	33065.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=1289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=2.350;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:2,1272:1.00:1274
chr5	176069831	rs901740	G	A	8894.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=27.54;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr5	176069862	.	C	CT,CCTCCCCG	156.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=183;set=Intersection	GT:AF:DP	0/1:0.17:158
chr5	176069863	.	C	CT	1302.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.002;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=2.778;QD=8.25;ReadPosRankSum=2.283;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:83,75:0.47:158
chr5	176069866	.	CG	GG	2056	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=13;HapScore=3;MGOF=39;MMLQ=23;MQ=59.57;NF=4,14;NR=75,42;PP=111,2056;QD=1.45569620253;SC=CCCCCCCCCCCGCCCCAGGTG;SbPval=0.76;Source=Platypus;TC=89;TCF=6;TCR=83;TR=79,56;WE=176069874;WS=176069842;set=Platypus	GT:AD:AF:DP	0/1:59,56:0.49:115
chr5	176069866	.	CG	CCGG	2056	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=13;HapScore=3;MGOF=39;MMLQ=23;MQ=59.57;NF=4,14;NR=75,42;PP=111,2056;QD=1.45569620253;SC=CCCCCCCCCCCGCCCCAGGTG;SbPval=0.76;Source=Platypus;TC=89;TCF=6;TCR=83;TR=79,56;WE=176069874;WS=176069842;set=Platypus	GT:AD:AF:DP	0/1:10,79:0.89:89
chr5	176069866	rs112646659	C	G,CCGCCCG	4660.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=9.040;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.66;MQRankSum=0.443;QD=30.26;ReadPosRankSum=1.646;SOR=1.299;set=HC	GT:AD:AF:DP	1/2:3,64,87:0.42,0.56:154
chr5	176070004	rs13176195	G	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr5	176070774	rs368052053	T	G	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:104,104:0.50:208
chr5	176071408	rs368584564	C	T	4798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=-0.125;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:255,250:0.50:505
chr5	176081591	rs13182989	C	T	8950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=888;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=0.659;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:429,447:0.51:876
chr5	176081856	rs13183320	A	G	10560.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr5	176081907	rs11267007	C	T	5666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-0.569;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:330,297:0.47:627
chr5	176083175	rs6878977	T	G	6288.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	176083997	rs4868677	G	A	4399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.802;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=4.099;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.558;QD=9.69;ReadPosRankSum=1.644;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:224,230:0.51:454
chr5	176304399	rs2304517	A	G	5154.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	176305466	rs2304516	T	A	28321.77	.	AC=2;AF=1.00;AN=2;DB;DP=1101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,1080:1.00:1080
chr5	176306676	rs2292257	G	A	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	176314434	rs2278493	C	T	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:202,184:0.48:386
chr5	176314459	rs2278492	G	A	3553.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:187,180:0.49:367
chr5	176314639	rs6875296	G	A	7801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-0.358;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:362,384:0.51:746
chr5	176315299	rs4976662	C	T	3441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=-1.920;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:248,189:0.43:437
chr5	176316455	rs35610191	C	T	5227.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:349,276:0.44:625
chr5	176323298	rs691141	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr5	176333126	rs2292256	C	T	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=1.884;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:79,68:0.46:147
chr5	176334195	rs2292255	C	T	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.516;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:98,84:0.46:182
chr5	176338113	.	GAAGAAAAGAA	G	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.59;MQRankSum=-4.103;QD=12.11;ReadPosRankSum=1.689;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr5	176338163	rs373478686	AAAGAAAAGAAAAG	A	1461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=63.46;MQRankSum=10.464;QD=10.91;ReadPosRankSum=2.936;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:83,51:0.38:134
chr5	176338288	rs17078630	C	T	2672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=5.810;QD=7.66;ReadPosRankSum=-1.730;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:202,147:0.42:349
chr5	176378574	rs365132	G	T	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:86,74:0.46:160
chr5	176382995	rs3733876	G	A	4405.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:278,233:0.46:511
chr5	176402401	rs1700490	G	A	2425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.910;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:136,126:0.48:262
chr5	176471284	rs58095821	T	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr5	176471286	rs11448853	A	AG	495.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr5	176471591	rs149307	C	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr5	176516631	rs1966265	G	A	2210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=1.102;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:158,116:0.42:274
chr5	176516953	rs434434	A	G	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	176516968	rs376782192	CGT	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.100;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:119,16:0.12:135
chr5	176517136	rs59390048	C	CGT,CGTGT	2387.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=75;set=Intersection	GT:AF:DP	1/2:0.20,0.74:74
chr5	176517170	rs387598	G	A	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr5	176517292	rs442856	A	G	10524.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:2,414:1.00:416
chr5	176517326	rs422421	T	C	11746.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr5	176517461	rs446382	T	G	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	176517797	rs376618	C	T	36090.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.756;ClippingRankSum=0.000;DB;DP=1389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.32;ReadPosRankSum=-0.477;SOR=0.294;set=HC	GT:AD:AF:DP	1/1:1,1370:1.00:1371
chr5	176518784	rs452885	C	T	9062.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr5	176519287	rs393923	G	A	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	176520243	rs351855	G	A	5516.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:235,258:0.52:493
chr5	176522728	rs42409	C	T	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	176523562	rs31777	C	A	17337.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr5	176523597	rs31776	A	G	19106.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:0,729:1.00:729
chr5	176630984	rs7721671	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr5	176639304	rs6556305	C	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr5	176700885	rs12660023	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	176721198	rs28580074	T	C	7524.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.230;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=3.439;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.22;ReadPosRankSum=-0.215;SOR=0.546;set=HC	GT:AD:AF:DP	1/1:1,286:1.00:287
chr5	176721272	rs11740250	G	C	4246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-0.020;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:159,201:0.56:360
chr5	176729736	rs58443060	AC	A	10380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=945;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.245;QD=12.55;ReadPosRankSum=1.011;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:236,591:0.71:827
chr5	176731452	rs28362590	G	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr5	176733116	rs4631	A	G	8862.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=25.99;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr5	176733341	rs4073745	A	G	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:115,120:0.51:235
chr5	176733616	rs9834	T	C	14801.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=25.56;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr5	176734855	rs4568379	G	C	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:95,119:0.56:214
chr5	176737720	rs13190036	A	G	9643.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr5	176738538	rs62397242	C	A	3686.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:194,189:0.49:383
chr5	176761535	rs11738681	A	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:23,46:0.67:69
chr5	176765395	rs11748912	G	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr5	176812567	.	GGT	G	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.186;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr5	176831826	rs17876030	C	G	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	176831980	rs17876029	T	C	22893.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.161;ClippingRankSum=0.000;DB;DP=892;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.10;ReadPosRankSum=0.368;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:1,876:1.00:877
chr5	176885178	rs28538572	A	G	7252.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr5	176895817	rs446104	GC	AA	15434.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr5	176916516	rs335462	C	T	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:155,184:0.54:339
chr5	176917078	rs734825	T	C	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	176917897	rs1132445	C	T	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:141,163:0.54:304
chr5	176929974	rs2544814	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.054;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr5	176930135	rs28376231	G	A	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	176930171	rs138153794	AGAG	A	3864.73	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:199,193:0.49:392
chr5	176931706	rs179810	G	C	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:151,160:0.51:311
chr5	176935215	rs55761704	GC	G	2036.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	176936650	rs28565502	T	C	8476.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	176938681	rs28695578	C	T	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr5	176939688	rs28544348	C	T	15881.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr5	176939735	rs335436	A	G	17003.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.32;ReadPosRankSum=0.813;SOR=0.228;set=HC	GT:AD:AF:DP	1/1:1,645:1.00:646
chr5	176940274	rs335437	C	T	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:73,77:0.51:150
chr5	176940384	rs335438	G	A	10275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=946;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=1.096;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:423,511:0.55:934
chr5	176940871	rs335439	G	C	10264.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr5	176942275	rs113217634	G	A	5828.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:219,285:0.57:504
chr5	176950794	rs28723606	A	G	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	176950879	rs28688891	T	C	10176.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr5	176951276	rs337382	A	G	12960.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr5	176959296	rs2246566	T	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr5	176963349	rs335460	G	A	6797.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	176980699	.	CA	C	1826.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=3.257;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.729;QD=9.61;ReadPosRankSum=2.095;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:94,96:0.51:190
chr5	176981490	.	A	ACGCCGCGCCGCCGCCGC	1470.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=58;ExcessHet=3.0103;FS=3.802;MLEAC=2;MLEAF=1.000;MQ=62.08;MQRankSum=-0.549;QD=31.29;ReadPosRankSum=-2.200;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:2,45:0.96:47
chr5	177019688	rs4607363	G	C	10859.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:18,446:0.96:464
chr5	177020602	rs114424853	A	C	5970.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:240,290:0.55:530
chr5	177022428	rs11545868	C	T	2661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=0.970;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:229,150:0.40:379
chr5	177027110	rs28707336	C	T	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.63;ReadPosRankSum=-0.876;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr5	177031348	rs11537644	T	C	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:206,141:0.41:347
chr5	177031602	rs28499092	C	G	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	177031948	rs55763804	G	A	2433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=0.012;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:130,119:0.48:249
chr5	177031954	rs28742937	A	G	13816.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=1.510;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr5	177031967	rs28698736	T	C	15702.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr5	177035488	.	GC	G	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-1.818;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:191,37:0.16:228
chr5	177036043	rs6600953	A	G	13464.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:2,522:1.00:524
chr5	177053334	rs5013573	T	C	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	177054649	rs10585103	AT	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=0.938;QD=2.65;ReadPosRankSum=0.349;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr5	177054672	rs7728458	T	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	177058525	rs62398479	A	G	3816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=55.65;MQRankSum=-0.764;QD=12.31;ReadPosRankSum=-0.039;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:131,179:0.58:310
chr5	177058655	rs6876792	A	G	6350.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:407,333:0.45:740
chr5	177059760	rs150057830	T	G	1765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.80;MQRankSum=-7.775;QD=14.36;ReadPosRankSum=-1.264;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:74,49:0.40:123
chr5	177059760	.	TAG	GAA	1114	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=28;MQ=55.59;NF=8;NR=22;PP=1114;QD=38.9155958287;SC=ATTGTGTGAATAGAAGAGGTC;SbPval=0.7;Source=Platypus;TC=75;TCF=23;TCR=52;TR=30;WE=177059770;WS=177059750;set=Platypus	GT:AD:AF:DP	1/0:45,30:0.40:75
chr5	177059762	rs145429332	G	A	1765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-7.927;QD=14.71;ReadPosRankSum=-0.954;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:73,47:0.39:120
chr5	177099140	.	T	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=54.07;MQRankSum=-7.869;QD=0.94;ReadPosRankSum=-2.859;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:106,21:0.17:127
chr5	177099259	.	AC	A	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.95;MQRankSum=1.889;QD=7.83;ReadPosRankSum=-0.090;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr5	177099274	.	C	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=53.46;MQRankSum=-3.765;QD=4.57;ReadPosRankSum=-2.088;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr5	177161891	rs140979906	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.06;QD=28.13;SOR=2.137;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	177161950	rs201456502	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.84;MQRankSum=-0.431;QD=5.40;ReadPosRankSum=0.191;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	177167788	rs200149909	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=-1.290;QD=16.34;ReadPosRankSum=0.000;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr5	177180012	rs199881665	G	A	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.392;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.82;MQRankSum=-0.838;QD=20.09;ReadPosRankSum=-2.104;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr5	177180236	rs76556918	G	A	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	177302646	.	T	C	102.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.51;QD=25.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	177310717	rs139876295	A	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.33;QD=24.76;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	177344152	rs76284623	G	T	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.52;QD=25.12;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	177347955	rs372116601	TA	T	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.70;MQRankSum=0.842;QD=21.35;ReadPosRankSum=-1.036;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	177347960	.	A	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.08;MQRankSum=0.792;QD=16.54;ReadPosRankSum=-0.328;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	177348037	.	C	CTTTG	2491.73	.	AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.91;QD=44.50;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	177348098	rs4958970	G	A	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.83;QD=43.09;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	177348106	rs4958971	A	C	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.14;QD=44.25;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	177348150	rs4958972	C	T	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.25;QD=44.09;SOR=1.524;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	177348155	rs4958973	A	G	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.35;QD=44.94;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	177422823	rs4072924	C	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,86:0.51:170
chr5	177422876	rs7445271	T	C	8686.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr5	177422908	rs1135320	A	G	3973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=0.775;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:221,210:0.49:431
chr5	177473975	rs116276523	A	G	7633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.337;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.44;MQRankSum=-26.369;QD=9.01;ReadPosRankSum=1.682;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:442,405:0.48:847
chr5	177482472	rs3088218	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr5	177483118	rs11953798	T	C	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:106,95:0.47:201
chr5	177483154	rs9687038	T	A	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr5	177483184	rs11953029	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr5	177483267	rs34145160	T	TA	42.84	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	177547247	rs7719667	T	C	10369.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr5	177547336	rs3812082	G	A	7271.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr5	177562183	rs72536798	C	CTG	962.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	177562251	rs10060446	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	177565520	rs10657977	T	TTGTGTG	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	177570759	rs6601218	T	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	177574901	rs7380934	C	G	21243.77	.	AC=2;AF=1.00;AN=2;DB;DP=820;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,812:1.00:812
chr5	177612634	rs7715618	A	C	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	177612734	rs7720480	T	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	177612734	.	TTTCTGGGTGA	CTTCTGGGTGG,CTTCTTGGTGG	207	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.51;FR=0.5000,0.5000;HP=3;HapScore=4;MGOF=3;MMLQ=27;MQ=59.41;NF=10,7;NR=3,2;PP=207,104;QD=20.035990374;SC=TTTTCTGGATTTTCTGGGTGA;SbPval=0.59;Source=Platypus;TC=22;TCF=17;TCR=5;TR=13,9;WE=177612752;WS=177612724;set=Platypus	GT:AF:DP	0/1:0.59:22
chr5	177612739	rs72648831	G	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.241;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr5	177612744	rs7715796	A	G	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.51;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	177612983	rs13169133	G	A	6374.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:330,324:0.50:654
chr5	177613123	rs10479619	T	C	16992.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=26.02;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,653:1.00:653
chr5	177613168	rs13184406	C	T	4422.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:217,225:0.51:442
chr5	177614183	rs2913783	T	C	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:180,152:0.46:332
chr5	177614387	rs6886332	A	G	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	177614401	rs11960863	C	G	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,59:0.65:91
chr5	177631783	rs17080447	G	A	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	177633116	rs3812089	A	G	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	177634401	rs7705458	T	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	177636571	rs2913752	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr5	177636990	rs111881090	CT	C	2285.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	177637447	rs2913751	G	A	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	177642177	rs2913748	C	T	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	177649986	rs3749813	G	A	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:130,100:0.43:230
chr5	177658883	rs2973729	C	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	177658896	rs3749810	A	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	177659631	rs2913859	G	A	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.421;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	177674589	rs72819017	C	T	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:63,87:0.58:150
chr5	177675217	rs2913851	C	T	7990.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:417,399:0.49:816
chr5	177675465	rs6894255	C	A	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr5	177676955	.	T	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.457;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr5	177676986	rs5873601	GCA	G	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-1.005;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr5	177679447	rs1549612	C	T	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	177679654	rs2033200	C	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	177679680	rs2973751	T	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	177682664	rs752283	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.69;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	177683011	rs890805	C	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	177683185	rs890803	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	177683377	rs890802	T	C	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	177684022	rs2913848	C	T	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	177684682	rs2913847	T	C	4595.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	177686815	rs2973747	C	A	7128.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr5	177688772	rs2973745	G	A	6441.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr5	177715291	rs890801	G	A	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=27.18;SOR=1.273;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	177715302	rs5873603	CA	C	3572.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	177715477	rs2913833	G	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr5	177715581	rs2913832	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	178040919	rs560842	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr5	178049444	rs34183525	C	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr5	178139442	rs1132338	T	G	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:122,118:0.49:240
chr5	178140090	rs1132336	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,63:0.46:137
chr5	178153317	rs34544499	C	CT	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=6.11;ReadPosRankSum=0.025;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr5	178154174	rs56185007	C	T	11002.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DB;DP=827;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-10.081;QD=13.50;ReadPosRankSum=-0.508;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:513,302:0.37:815
chr5	178154175	rs56328282	A	G	11002.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.180;ClippingRankSum=0.000;DB;DP=821;ExcessHet=3.0103;FS=3.377;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-10.088;QD=13.58;ReadPosRankSum=-0.784;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:510,300:0.37:810
chr5	178154189	rs34361107	T	TG	5400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-10.043;QD=8.45;ReadPosRankSum=-3.216;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:414,225:0.35:639
chr5	178154220	rs35528027	C	T	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.056;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=24.265;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-13.214;QD=4.72;ReadPosRankSum=-6.223;SOR=1.793;set=HC	GT:AD:AF:DP	0/1:228,84:0.27:312
chr5	178293175	rs146176056	C	CT	1511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=832;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-14.263;QD=1.84;ReadPosRankSum=5.588;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:694,127:0.15:821
chr5	178369673	rs10060764	T	C	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	178391902	rs12719860	A	C	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr5	178395850	rs11741688	G	C	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	178396742	rs4700759	G	C	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	178401552	rs4700991	C	T	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	178404573	.	CTT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.651;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:73,14:0.16:87
chr5	178407292	rs2856351	C	T	5999.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	178410738	rs903988	C	T	9960.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr5	178411290	rs11279361	AGCACGCCTC	A	9653.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	178411315	rs2645341	C	T	9593.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.01;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr5	178412273	rs35715923	T	C	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr5	178412592	rs6880010	T	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	178412702	.	T	TC,TAA	2222.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=5.863;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.11;MQRankSum=-0.098;QD=41.16;ReadPosRankSum=-0.964;SOR=2.178;set=HC	GT:AD:AF:DP	1/2:1,28,25:0.52,0.46:54
chr5	178412716	rs11950921	C	A	2660.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.339;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.543;MLEAC=2;MLEAF=1.000;MQ=59.33;MQRankSum=-0.083;QD=35.96;ReadPosRankSum=-0.774;SOR=1.335;set=HC	GT:AD:AF:DP	1/1:1,73:0.99:74
chr5	178413816	rs2256966	T	C	19875.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,761:1.00:761
chr5	178413947	rs11746675	T	C	13035.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr5	178414565	rs2645340	C	T	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	178415937	rs2067011	A	G	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	178415982	rs4701014	A	G	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	178416063	rs2645339	G	A	15811.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr5	178416203	rs143495088	CCCCTCCCCA	C	12794.73	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr5	178416288	rs2071246	G	A	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:3,290:0.99:293
chr5	178419279	rs11283410	G	GGGCAAGGTCT	9884.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=50.43;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	178419288	rs2645335	C	T	9680.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=42.09;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	178419396	rs11449973	A	AC	13104.73	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr5	178421770	rs2645329	T	G	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	178422083	rs1078978	C	T	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	178507069	rs1445846	T	C	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:63,71:0.53:134
chr5	178507090	rs1445845	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr5	178540975	rs1054480	G	A	3041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=0.061;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:176,159:0.47:335
chr5	178548514	rs2303640	G	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr5	178549791	rs2303641	G	A	3062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.987;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:184,163:0.47:347
chr5	178555045	rs2303644	G	A	4383.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:338,235:0.41:573
chr5	178557142	rs2251105	A	G	5788.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	178562834	rs3822595	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr5	178562967	rs1972715	G	A	5401.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:339,281:0.45:620
chr5	178563125	rs1549603	A	T	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:149,156:0.51:305
chr5	178565001	rs2303639	C	T	1834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.915;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:73,91:0.55:164
chr5	178567054	rs2303638	A	G	3788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-3.047;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:214,200:0.48:414
chr5	178567082	rs34369919	C	T	2593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.088;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:151,133:0.47:284
chr5	178581797	rs2278222	C	T	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:179,186:0.51:365
chr5	178581859	rs2278221	G	A	5212.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:272,266:0.49:538
chr5	178634619	rs423552	C	T	28086.77	.	AC=2;AF=1.00;AN=2;DB;DP=1069;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,1058:1.00:1058
chr5	178634672	rs398829	C	T	10469.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:274,292:0.52:566
chr5	178634683	rs11750821	C	T	9848.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:243,249:0.51:492
chr5	178768439	rs55714836	T	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-1.961;QD=7.60;ReadPosRankSum=0.398;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr5	178768468	rs142165776	G	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.149;QD=7.39;ReadPosRankSum=0.075;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr5	178770759	rs2271213	C	G	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:173,110:0.39:283
chr5	178770981	rs2271212	A	G	6184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-0.921;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:430,325:0.43:755
chr5	178949499	rs28689892	C	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=28.002;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-9.483;QD=2.36;ReadPosRankSum=-4.233;SOR=3.819;set=HC	GT:AD:AF:DP	0/1:125,28:0.18:153
chr5	178949560	rs28413987	AG	GT	8439.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;JOINED;set=Intersection	GT:AD:AF:DP	0/1:293,221:0.43:514
chr5	178949580	rs71596435	C	T	7309.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:326,354:0.52:680
chr5	178949612	rs28550616	CA	TG	15670.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;JOINED;set=Intersection	GT:AD:AF:DP	0/1:387,402:0.51:789
chr5	178949781	rs28420183	A	G	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.21;QD=30.77;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	178950263	rs34793499	GA	G	90.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=42.19;MQRankSum=0.921;QD=11.34;ReadPosRankSum=-1.465;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	178951351	rs145029017	A	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr5	178951365	rs138816614	C	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr5	178951598	rs4701188	G	A	30250.77	.	AC=2;AF=1.00;AN=2;DB;DP=1177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.77;QD=26.15;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,1157:1.00:1157
chr5	178986978	rs7704349	C	G	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:124,105:0.46:229
chr5	178986987	rs12658664	C	T	3009.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:114,145:0.56:259
chr5	178989386	rs28611242	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	178989473	rs28510162	T	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	178996435	rs11743261	A	G	7663.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr5	179007923	rs144980119	T	C	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.395;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-1.026;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr5	179012968	rs13361148	A	G	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	179016664	rs6895677	A	T	3083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.572;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:163,156:0.49:319
chr5	179020622	rs4701135	T	C	4396.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:216,223:0.51:439
chr5	179021982	rs28685239	G	A	3507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.479;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:179,181:0.50:360
chr5	179025550	rs4701136	A	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	179025789	rs72824522	G	A	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:103,80:0.44:183
chr5	179032755	rs6877888	C	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	179034368	rs72824531	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr5	179034707	rs72824532	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr5	179036357	rs7448707	G	A	3950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.179;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:320,217:0.40:537
chr5	179036608	rs8087	T	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:49,56:0.53:105
chr5	179041785	rs142134683	GAAA	G	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.516;QD=19.76;ReadPosRankSum=-0.652;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr5	179043041	rs4256313	C	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:100,55:0.35:155
chr5	179043075	rs4515257	T	C	9217.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	179045142	rs4701143	G	A	7047.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:323,346:0.52:669
chr5	179048205	rs4701144	T	C	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:75,87:0.54:162
chr5	179049138	rs4301193	C	A	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	179049934	.	GCCCGGCCCGGCCCGC	G	558.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.500;MQ=61.96;MQRankSum=3.413;QD=12.15;ReadPosRankSum=2.033;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr5	179049944	rs377329872	G	C	151.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.96;MQRankSum=-1.833;QD=4.74;ReadPosRankSum=1.059;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr5	179050188	rs1136267	A	C	7360.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:416,376:0.47:792
chr5	179069309	rs6887611	G	C	8959.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr5	179069468	rs62405726	A	G	6747.77	.	AC=1;AF=0.500;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	0/1:576,373:0.39:949
chr5	179071822	rs73809615	G	C	6629.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:310,332:0.52:642
chr5	179071866	rs4990390	A	G	9445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DB;DP=980;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-3.586;QD=9.77;ReadPosRankSum=-0.569;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:493,474:0.49:967
chr5	179078391	rs57380196	C	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,54:0.53:101
chr5	179078940	rs6882398	T	C	25502.77	.	AC=2;AF=1.00;AN=2;DB;DP=977;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.37;QD=26.24;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,972:1.00:972
chr5	179126090	rs1134924	C	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	179136138	rs6601068	A	G	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	179147641	rs59666900	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr5	179150788	.	G	GT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.047;QD=0.37;ReadPosRankSum=-0.042;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:101,20:0.17:121
chr5	179260153	rs4935	C	T	5426.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:191,272:0.59:463
chr5	179260213	rs4797	G	A	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:61,86:0.59:147
chr5	179260494	rs155787	G	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr5	179264731	rs10277	T	C	4834.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:203,244:0.55:447
chr5	179264915	rs1065154	G	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr5	179267949	rs248248	T	C	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr5	179278466	rs4700702	A	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr5	179280379	rs1650893	T	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:120,119:0.50:239
chr5	179280392	rs112867427	G	A	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:125,129:0.51:254
chr5	179285752	rs10060182	G	A	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:122,145:0.54:267
chr5	179287207	rs148609553	CGT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.946;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr5	179287576	rs248254	C	G	7232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.649;QD=15.69;ReadPosRankSum=2.971;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:265,196:0.43:461
chr5	179287585	rs416974	G	C	7361.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.154;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.651;QD=16.29;ReadPosRankSum=2.509;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:260,192:0.42:452
chr5	179287586	rs378684	C	T	7247.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.635;QD=16.21;ReadPosRankSum=2.052;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:255,192:0.43:447
chr5	179287622	rs1611076	G	GTA	5781.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:178,152:0.46:330
chr5	179290845	rs30386	T	G	7153.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:405,365:0.47:770
chr5	179291279	rs172056	A	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr5	179297268	rs72813746	G	A	7102.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:384,364:0.49:748
chr5	179299867	rs532795	T	C	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr5	179302921	rs61739270	C	T	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:94,104:0.53:198
chr5	179305655	rs3734003	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr5	179306333	rs17079730	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr5	179334857	rs185073	A	G	6377.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.641;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=3.598;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.03;ReadPosRankSum=-0.638;SOR=0.661;set=HC	GT:AD:AF:DP	1/1:1,244:1.00:245
chr5	179405399	rs27019	C	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr5	179407229	rs28011	C	T	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:57,77:0.57:134
chr5	179498595	rs3749821	C	T	3653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=2.445;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:205,192:0.48:397
chr5	179498658	rs3828698	G	T	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-1.595;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:73,86:0.54:159
chr5	179528351	rs67139455	TG	T	1119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.93;ReadPosRankSum=-0.347;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr5	179528359	rs113499659	G	C	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.04;ReadPosRankSum=0.911;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:9,31:0.78:40
chr5	179529124	rs7725201	G	A	2765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=1.169;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:80,136:0.63:216
chr5	179542290	rs4700873	T	A	1104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=0.706;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:127,78:0.38:205
chr5	179542473	rs35177368	TCACTC	T	3679.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:84,95:0.53:179
chr5	179548343	rs13160214	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr5	179554522	rs7728345	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr5	179555407	rs13354066	T	C	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=2.662;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:29,36:0.55:65
chr5	179555654	rs6895192	C	T	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:133,87:0.40:220
chr5	179563359	rs55638756	C	T	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:214,154:0.42:368
chr5	179563532	rs2890346	G	C	5756.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	179565071	rs4700878	G	C	5382.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	179565136	rs4700715	C	A	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	179663614	rs6601104	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	179667933	rs6895740	C	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr5	179686378	rs33928286	G	A	10318.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.73;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr5	179707194	rs7715540	G	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	179728707	rs4700931	T	C	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	179729519	rs1035411	A	G	8849.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:1,351:1.00:352
chr5	179729625	rs2303005	A	G	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:81,85:0.51:166
chr5	179734139	rs11741142	T	C	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr5	179734145	rs72363427	GTGGGGGTGGGGGC	G	2715.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:80,72:0.47:152
chr5	179734200	rs73343449	A	G	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:153,150:0.50:303
chr5	179734312	rs3763131	T	C	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:180,154:0.46:334
chr5	179740827	rs2303007	T	C	2409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-1.350;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:171,128:0.43:299
chr5	179743731	rs2303008	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr5	179751390	rs1559113	A	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr5	179763398	rs6891083	T	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:68,50:0.42:118
chr5	179765467	rs55946431	C	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr5	179779339	.	GA	G	983.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.818;QD=6.83;ReadPosRankSum=0.984;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:37,107:0.74:144
chr5	179780340	rs5873687	GT	G	4685.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=39.38;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	179780382	rs11452117	A	AG	1175.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	179980302	rs10516143	T	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr5	179980527	rs11738129	A	G	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr5	179991841	rs6874985	A	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr5	179994815	rs146190811	CTG	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=1.858;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:98,13:0.12:111
chr5	179996111	rs6877400	C	T	6541.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	179998454	rs13164597	C	T	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:130,116:0.47:246
chr5	180017927	rs117170752	A	C	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:72,69:0.49:141
chr5	180030132	rs113034305	C	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr5	180030313	rs307821	C	A	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:151,170:0.53:321
chr5	180030519	rs72816991	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr5	180038545	rs744283	A	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr5	180039583	rs75614493	C	T	8133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=4.328;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:342,406:0.54:748
chr5	180041001	rs421662	G	C	14472.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.74;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr5	180041001	.	GCGGTCAT	CCGGTCAC,CCGGTCAT	2364	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=11;MMLQ=23;MQ=60.0;NF=89,194;NR=32,75;PP=1825,2364;QD=15.5245278914;SC=TCCAGCAGGGGCGGTCATGTA;SbPval=0.61;Source=Platypus;TC=271;TCF=195;TCR=76;TR=121,269;WE=180041016;WS=180040991;set=Platypus	GT:AF:DP	0/1:0.45:271
chr5	180041008	rs366388	T	C	4353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.460;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:249,217:0.47:466
chr5	180041180	.	CTGGGGAGACAGAGGGAAGCTTGTCCCGTGGTGGA	C	131.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=880;set=Intersection	GT:AD:AF:DP	0/1:390,41:0.10:431
chr5	180041208	rs659268	T	C	4759.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:340,255:0.43:595
chr5	180043330	rs55657009	C	G	4617.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:458,272:0.37:730
chr5	180043731	rs3765095	C	A	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,55:0.47:117
chr5	180044012	rs113793749	G	T	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:108,154:0.59:262
chr5	180045604	rs72818906	C	T	148.10	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr5	180045700	rs3214903	G	GGGTTACCCTA	3370.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	180046209	rs446003	C	T	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	180046344	rs448012	G	C	4087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.903;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.167;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:220,207:0.48:427
chr5	180046426	rs70973949	C	CTGGCCGCTTAGCTAAGGCACAG	2762.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:83,68:0.45:151
chr5	180046492	rs201407038	CAG	C	7703.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	180047412	rs382266	T	C	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	180047739	rs141972439	C	CGT	2449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=7.156;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=11.24;ReadPosRankSum=1.307;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:129,89:0.41:218
chr5	180047863	rs423086	C	G	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	180048056	rs2242214	C	T	6993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=2.593;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:316,344:0.52:660
chr5	180048972	rs79676169	C	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:67,38:0.36:105
chr5	180049925	rs201607334	A	AC	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.646;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr5	180049927	rs60877472	CA	C	394.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=1.149;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr5	180049928	rs307828	A	C	381.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.331;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr5	180051118	rs728986	A	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr5	180052817	rs3736063	G	A	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr5	180052831	rs144453562	TGGCTGTGCAGGGGACCTGA	T	676.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:70,22:0.24:92
chr5	180052946	rs3736062	G	A	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr5	180053307	rs402647	A	G	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	180055862	rs383985	T	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:81,45:0.36:126
chr5	180056620	rs414348	G	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr5	180056863	rs56361806	C	T	8344.77	.	AC=1;AF=0.500;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	0/1:408,417:0.51:825
chr5	180057231	rs3736061	C	A	4231.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:242,220:0.48:462
chr5	180057249	rs75516704	G	A	4753.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:219,242:0.52:461
chr5	180057356	rs56188706	C	G	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:121,95:0.44:216
chr5	180076460	rs147801168	G	C	1947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-0.717;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:81,101:0.55:182
chr5	180165976	rs150261063	T	TC	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr5	180165983	rs2054696	G	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	180166461	rs10464105	C	G	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	180276402	rs168726	C	T	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	180278393	rs705441	C	G	13292.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,517:1.00:517
chr5	180288239	rs2121117	G	A	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	180326571	rs2619738	T	A	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.707;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.12;ReadPosRankSum=-0.370;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr5	180326574	.	C	T	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.806;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.40;ReadPosRankSum=0.281;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr5	180329359	rs7735361	T	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:115,93:0.45:208
chr5	180329458	rs7712020	C	G	4285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-4.201;QD=8.78;ReadPosRankSum=2.191;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:257,231:0.47:488
chr5	180329536	rs7712185	C	T	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:77,84:0.52:161
chr5	180338300	rs2276994	G	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr5	180338368	rs2276995	A	G	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:125,84:0.40:209
chr5	180374484	rs3733755	C	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:86,80:0.48:166
chr5	180374534	rs3733756	G	A	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:146,146:0.50:292
chr5	180374898	rs7711990	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr5	180409595	rs4397092	A	G	5993.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=2.048;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:2,231:0.99:233
chr5	180430797	rs72494581	T	C	4050.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:163,197:0.55:360
chr5	180430996	rs114244788	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,34:0.33:104
chr5	180431009	rs200820251	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.256;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.154;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-7.054;QD=1.37;ReadPosRankSum=-4.722;SOR=1.626;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr5	180432416	rs7726150	C	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr5	180472498	rs28677846	C	T	7647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.877;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:410,392:0.49:802
chr5	180472513	rs6894087	A	G	8275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.176;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:414,427:0.51:841
chr5	180474814	rs13359580	CA	TG	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr5	180477449	rs7702426	C	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr5	180481216	.	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.492;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr5	180482303	rs112262574	T	TA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.220;QD=0.32;ReadPosRankSum=0.516;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:156,31:0.17:187
chr5	180482795	rs3885614	A	T	3624.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:195,181:0.48:376
chr5	180482899	rs3885615	C	T	4918.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:191,241:0.56:432
chr5	180486224	rs7379015	T	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	180486247	rs6601166	G	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	180486785	rs10068763	G	C	7588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0.000;DB;DP=1017;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.698;QD=7.53;ReadPosRankSum=2.797;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:580,428:0.42:1008
chr5	180486841	rs10054109	C	T	5511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=4.306;QD=8.21;ReadPosRankSum=-0.194;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:379,292:0.44:671
chr5	180486891	rs33927456	C	CG	2176.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:135,116:0.46:251
chr5	180551937	rs10073017	C	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,34:0.40:86
chr5	180552412	rs7724668	G	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr5	180582604	rs2546423	A	G	3649.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:259,195:0.43:454
chr5	180582980	rs7380309	G	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr5	180583039	.	G	GTTCT,GTTCTTTCTTTCTTTCT	337.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.92;QD=42.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:0,3,5:0.38,0.62:8
chr5	180622615	rs254460	C	T	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:180,195:0.52:375
chr5	180625254	rs254458	G	A	5733.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:253,285:0.53:538
chr5	180626927	rs416574	A	G	4750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-1.837;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:200,231:0.54:431
chr5	180631817	rs2545112	T	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr5	180631828	rs2770945	G	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr5	180668751	rs150391948	A	G	5112.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:291,263:0.47:554
chr6	292694	rs3832447	GC	G	5068.73	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:283,165:0.37:448
chr6	311797	.	G	GT	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.198;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:194,70:0.27:264
chr6	312029	rs150517961	TAATG	T	5899.73	.	AC=1;AF=0.500;AN=2;DB;DP=524;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:318,166:0.34:484
chr6	335175	rs2671431	A	T	9524.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr6	335251	rs3757305	T	C	7044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.587;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:370,196:0.35:566
chr6	335253	rs3757306	T	C	7044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-0.541;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:375,196:0.34:571
chr6	335268	rs4959733	C	T	2953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-1.465;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:355,180:0.34:535
chr6	346429	rs10642379	G	GACACAC	1306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=12.915;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.292;QD=2.47;ReadPosRankSum=1.014;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:412,118:0.22:530
chr6	346457	rs56384452	C	G	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.584;QD=0.60;ReadPosRankSum=-0.032;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:521,83:0.14:604
chr6	348051	rs1877172	A	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:91,55:0.38:146
chr6	348080	rs2797333	A	G	7794.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr6	348906	rs11242812	G	A	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:126,68:0.35:194
chr6	350829	rs1129085	G	A	2332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.564;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:451,165:0.27:616
chr6	350940	rs11408655	T	TA	3381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=-1.665;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:98,111:0.53:209
chr6	367243	rs7776416	T	C	5865.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:185,278:0.60:463
chr6	367352	rs7764099	C	T	14722.77	.	AC=1;AF=0.500;AN=2;DB;DP=1281;set=Intersection	GT:AD:AF:DP	0/1:555,715:0.56:1270
chr6	367481	rs7738368	T	G	10440.77	.	AC=1;AF=0.500;AN=2;DB;DP=820;set=Intersection	GT:AD:AF:DP	0/1:314,491:0.61:805
chr6	391623	rs6935510	C	A	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr6	406552	rs56116020	C	CA	886.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	407629	.	C	CT	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.358;QD=1.97;ReadPosRankSum=1.457;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:142,53:0.27:195
chr6	549364	rs2473490	G	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,48:0.61:79
chr6	549390	rs2476847	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr6	554045	rs11399543	C	CT	377.79	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:4,23:0.85:27
chr6	556147	rs2476844	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	564515	rs2277096	G	T	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.466;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:186,55:0.23:241
chr6	572480	rs2073009	G	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.225;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:163,63:0.28:226
chr6	572714	rs12154040	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr6	576902	rs708038	T	C	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:61,70:0.53:131
chr6	597871	rs4960092	G	A	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	597900	rs75327155	T	C	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:29,62:0.68:91
chr6	599042	rs2294664	T	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr6	601244	rs1766844	A	G	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	630033	rs17756886	T	C	5422.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:226,262:0.54:488
chr6	656143	rs1211554	C	A	10244.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr6	707044	rs72837934	C	T	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:320,199:0.38:519
chr6	707241	rs12529441	C	T	16898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0.000;DB;DP=2199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=1.276;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:1237,917:0.43:2154
chr6	1313117	rs9502889	A	C	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.91;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	1313121	rs9502890	A	C	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.27;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	1313470	rs4435985	C	T	14670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=1999;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=1.702;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:1162,788:0.40:1950
chr6	1313952	rs992327	A	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	1313980	rs147255181	C	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=1.847;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr6	1390276	.	CCCG	C	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-2.679;QD=1.19;ReadPosRankSum=3.316;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:258,29:0.10:287
chr6	1390427	.	G	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.524;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:187,34:0.15:221
chr6	1391085	rs147426137	G	GGGC	11496.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=3.015;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.198;QD=43.55;ReadPosRankSum=-0.135;SOR=0.125;set=HC	GT:AD:AF:DP	1/1:2,262:0.99:264
chr6	1395043	rs2293783	T	C	7388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.827;QD=12.34;ReadPosRankSum=0.356;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:242,357:0.60:599
chr6	1612017	.	A	ACGG	4347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DP=611;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.665;QD=9.58;ReadPosRankSum=0.182;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:225,229:0.50:454
chr6	1624636	rs151161492	C	T	2274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=3.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=2.464;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:73,107:0.59:180
chr6	1742794	rs3734739	A	G	19622.77	.	AC=2;AF=1.00;AN=2;DB;DP=774;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.58;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,767:1.00:767
chr6	1742908	rs3734740	C	G	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	1960335	rs1323632	C	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	2623930	rs9503233	G	A	4106.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:117,192:0.62:309
chr6	2675271	rs9328114	C	T	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:95,167:0.64:262
chr6	2683439	rs898772	T	A	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:91,124:0.58:215
chr6	2749661	rs2296355	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr6	2766465	rs8333	T	C	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:229,147:0.39:376
chr6	2783868	rs67862398	C	CTTT	722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=8.300;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=20.08;ReadPosRankSum=-0.744;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr6	2834265	rs386915	C	T	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr6	2838046	rs316339	A	G	6594.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr6	2838248	rs316341	G	A	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	2948965	rs318426	C	T	5985.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:209,289:0.58:498
chr6	2953252	rs2244693	T	C	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:133,184:0.58:317
chr6	2953445	rs3818276	A	G	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:129,162:0.56:291
chr6	2959513	rs2236277	C	T	7146.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:310,354:0.53:664
chr6	2966558	rs143603968	G	GT	914.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,57:0.52:110
chr6	2966681	rs7751512	C	T	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:59,87:0.60:146
chr6	2994218	rs56336390	C	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-1.459;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:59,54:0.48:113
chr6	3006687	rs3757080	C	T	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:130,81:0.38:211
chr6	3010390	rs1143684	C	T	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:279,170:0.38:449
chr6	3010459	rs2475208	C	T	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:124,69:0.36:193
chr6	3015489	rs4149366	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr6	3015790	rs1049115	A	G	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:365,240:0.40:605
chr6	3015865	rs4149367	C	T	5506.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:562,320:0.36:882
chr6	3015898	rs4149368	A	T	4162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-0.819;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:422,237:0.36:659
chr6	3019654	rs4149370	T	C	4759.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:330,253:0.43:583
chr6	3076931	rs7755818	A	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.40;ReadPosRankSum=-0.469;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	3076937	rs7759866	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.71;ReadPosRankSum=-2.509;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr6	3077141	rs2272990	T	C	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr6	3104696	rs10498658	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	3118947	rs2231355	A	G	10584.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:2,422:1.00:424
chr6	3138194	rs1534998	T	C	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:121,180:0.60:301
chr6	3157798	rs909964	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	3157809	rs909965	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	3255163	rs11242830	C	T	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	3255327	rs9503497	G	A	12390.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,482:1.00:482
chr6	3255340	rs9503498	A	C	12611.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,490:1.00:490
chr6	3259463	rs9501962	G	T	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=1.502;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	3263830	rs12193912	C	T	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	3264101	rs4959785	A	G	8439.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr6	3264487	rs4959786	T	C	14129.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:1,541:1.00:542
chr6	3264502	rs4959787	G	C	14902.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr6	3264526	rs4959788	CT	TC	15222.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,596:1.00:598
chr6	3264582	rs11757564	G	A	11891.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr6	3264671	rs13193012	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr6	3285286	rs10793841	A	G	11534.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=3.076;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.66;ReadPosRankSum=-1.190;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:4,505:0.99:509
chr6	3287118	rs6910086	T	C	15547.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.101;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=-1.047;SOR=2.011;set=HC	GT:AD:AF:DP	1/1:1,610:1.00:611
chr6	3410247	rs2277076	T	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	3438738	rs12197689	G	A	14053.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr6	3439510	rs9503595	T	C	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.42;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	3439595	rs35613438	G	GA	2337.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=28.86;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	3439637	rs9502003	G	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	3723764	rs1045778	G	T	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr6	3727811	rs226959	C	G	8661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=1.071;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:300,424:0.59:724
chr6	3728024	rs7767269	A	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr6	3738268	rs3215783	GC	G	2669.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:183,101:0.36:284
chr6	3738897	rs11390464	A	AG	1075.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr6	3739193	rs4959871	T	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	4020336	rs9392546	C	T	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	4020356	rs9405217	G	A	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	4020540	rs78628853	AT	A	3159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.356;QD=9.05;ReadPosRankSum=0.102;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:73,276:0.79:349
chr6	4020600	.	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DP=155;set=Intersection	GT:AD:AF:DP	0/1:90,63:0.41:153
chr6	4021554	rs11752006	A	G	23412.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=943;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=0.981;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:2,921:1.00:923
chr6	4031998	rs9503893	A	G	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	4033065	rs6924389	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	4037458	rs7744603	A	G	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	4037582	rs7763233	C	A	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	4040922	rs9392551	A	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	4052167	rs3747761	C	A	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	4052383	rs3747762	G	A	11588.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr6	4052458	rs3833454	G	GT	1438.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	4057233	rs853407	C	T	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	4057429	rs853408	A	G	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr6	4057542	rs9503907	T	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	4069166	rs595413	C	T	27192.77	.	AC=2;AF=1.00;AN=2;DB;DP=1080;set=Intersection	GT:AD:AF:DP	1/1:0,1066:1.00:1066
chr6	4119553	rs57858259	AT	A	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.584;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:115,48:0.29:163
chr6	4715882	rs3812183	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr6	4715894	rs3812182	T	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr6	4715923	rs34254931	G	GT	1004.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.961;QD=10.05;ReadPosRankSum=-0.746;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:48,52:0.52:100
chr6	4936074	rs1539004	T	G	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	4937662	rs9502253	A	C	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	4937728	rs36001374	C	CA,CAA	2717.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.027;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=2.202;SOR=0.559;set=HC	GT:AD:AF:DP	1/2:15,75,58:0.51,0.39:148
chr6	4937742	rs61406305	C	CT	8506.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	4937747	rs56133250	A	G	8863.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	4944004	rs200106765	T	TA	230.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.671;QD=10.99;ReadPosRankSum=-0.707;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr6	4952413	rs2793263	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.578;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	4999193	rs396839	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	5000721	rs2764108	T	C	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=38.85;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	5000724	rs10631918	C	CT	1451.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;QD=32.99;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	5001577	rs912711	G	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	5003952	rs4960056	T	C	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr6	5086070	rs667752	A	G	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	5086211	rs584962	G	C	17676.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr6	5086558	rs436556	C	A	20258.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:0,761:1.00:761
chr6	5109592	rs9606	T	G	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	5138809	rs11301112	GT	G	510.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	5139012	rs463054	C	A	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	5148679	.	T	TTCTGAATCGTAATCCTGAGCTGGGCTGGGGGCGCAGAGTCAGAACTCTGAATCGTAATCCTGAGCTGGGCTGGTGGGGCAGAGTCAGAAC	2435.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=2.600;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.14;ReadPosRankSum=6.986;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:60,50:0.45:110
chr6	5148719	rs200871	T	C	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	5217010	rs41302851	C	T	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:76,119:0.61:195
chr6	5260816	rs4141761	A	G	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:71,93:0.57:164
chr6	5431960	rs10900967	A	G	4828.77	.	AC=1;AF=0.500;AN=2;DB;DP=763;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:472,279:0.37:751
chr6	5545654	rs7749599	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	5999464	rs3749860	C	G	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:96,134:0.58:230
chr6	6145692	rs1050783	C	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr6	6145726	rs1050782	A	G	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:41,86:0.68:127
chr6	6151952	rs3024458	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr6	6152007	rs5980	C	T	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:81,108:0.57:189
chr6	6152137	rs5988	C	G	8411.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:280,402:0.59:682
chr6	6152211	rs2274394	C	G	5134.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:173,244:0.59:417
chr6	6167558	rs199591949	ATTTTT	A	5129.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;QD=32.06;SOR=1.700;set=HC	GT:AD:AF:DP	1/1:8,152:0.95:160
chr6	6167621	rs435048	G	A	11836.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr6	6174786	rs380058	G	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	6250967	rs3024370	G	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr6	6305458	rs7745910	G	C	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:99,74:0.43:173
chr6	6305477	rs2295753	C	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:167,99:0.37:266
chr6	6318795	rs5985	C	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:132,64:0.33:196
chr6	6318921	rs11414870	G	GA	2154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=1.177;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:118,169:0.59:287
chr6	6320808	rs2815822	T	G	11014.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr6	6321128	rs1024231	T	C	25271.77	.	AC=2;AF=1.00;AN=2;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,983:1.00:983
chr6	6588881	rs977785	A	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	6588932	rs201153136	G	A	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:101,123:0.55:224
chr6	6589192	rs112924538	G	GGA	2915.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	6625418	rs2233124	T	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=1.057;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:30,45:0.60:75
chr6	6626731	rs2233126	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	6649974	rs3062400	A	AAGG	1330.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	7187773	rs3028658	C	CTTTTA	4122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.209;QD=21.14;ReadPosRankSum=-0.754;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:86,109:0.56:195
chr6	7211818	rs1334576	G	A	6568.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:255,327:0.56:582
chr6	7229346	rs2714315	T	C	6064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=-0.065;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:225,315:0.58:540
chr6	7229619	rs12192672	G	A	26446.77	.	AC=1;AF=0.500;AN=2;DB;DP=2184;set=Intersection	GT:AD:AF:DP	0/1:900,1256:0.58:2156
chr6	7231843	rs9379084	G	A	3794.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:305,188:0.38:493
chr6	7240876	rs41302867	G	A	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:106,57:0.35:163
chr6	7247248	rs2256596	T	C	3542.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:145,168:0.54:313
chr6	7247344	rs35742417	C	A	7241.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:377,366:0.49:743
chr6	7289957	rs16740	CCA	C	1543.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:126,47:0.27:173
chr6	7290215	rs3799511	T	G	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:87,64:0.42:151
chr6	7290282	rs9505117	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	7295240	rs2714360	A	G	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.384;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=0.836;SOR=1.337;set=HC	GT:AD:AF:DP	0/1:30,39:0.57:69
chr6	7295283	rs7764613	T	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr6	7295300	rs35998405	TA	T	1545.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:59,89:0.60:148
chr6	7295441	rs76318232	A	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr6	7295605	rs9502587	A	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:90,70:0.44:160
chr6	7295755	rs2714361	G	A	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	7298074	rs78770007	T	A	3308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=2.649;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:402,202:0.33:604
chr6	7298287	rs2714309	G	A	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:58,104:0.64:162
chr6	7301834	rs78399427	T	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr6	7303735	rs9505131	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr6	7303952	rs3778324	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:47,16:0.25:63
chr6	7313338	rs62624976	G	C	20237.77	.	AC=1;AF=0.500;AN=2;DB;DP=1713;set=Intersection	GT:AD:AF:DP	0/1:678,1025:0.60:1703
chr6	7329417	rs62387870	C	T	1826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=2.188;QD=10.94;ReadPosRankSum=0.923;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:77,90:0.54:167
chr6	7329873	rs2764095	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	7330194	rs11381590	T	TG	669.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr6	7368917	rs1324502	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr6	7373249	rs11243160	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-0.167;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr6	7385891	rs147220799	ATT	A	1174.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr6	7387236	rs9406026	G	A	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:242,190:0.44:432
chr6	7387433	rs35613760	T	TA	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr6	7387462	rs9406027	T	C	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	7390369	rs2296358	T	C	20146.77	.	AC=2;AF=1.00;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	1/1:0,780:1.00:780
chr6	7393452	rs2274212	C	T	4283.73	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:174,216:0.55:390
chr6	7395229	rs12527405	A	G	3348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.133;QD=8.37;ReadPosRankSum=-1.352;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:224,176:0.44:400
chr6	7395497	rs6899625	G	A	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr6	7396836	rs12212766	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=1.740;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr6	7396887	rs12212772	G	A	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.290;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:28,26:0.48:54
chr6	7397125	rs150425917	G	GGTGT	1031.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr6	7398832	rs2296359	A	G	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=-0.240;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr6	7401382	rs147185967	AAAAC	A	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr6	7411831	rs12530477	T	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr6	7414382	rs2245533	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr6	7414657	rs4960314	T	C	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	7542236	rs121912998	G	A	11118.77	.	AC=1;AF=0.500;AN=2;DB;DP=1462;set=Intersection	GT:AD:AF:DP	0/1:841,602:0.42:1443
chr6	7558318	rs10484326	T	C	2737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-0.860;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:269,153:0.36:422
chr6	7563983	rs2806234	T	G	10207.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr6	7565490	rs35266991	A	AT	1439.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:7,73:0.91:80
chr6	7566745	rs200962599	G	GA	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.518;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:108,30:0.22:138
chr6	7567970	rs2076296	C	T	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr6	7569326	rs11755954	C	T	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr6	7571874	rs926411	G	A	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	7572262	rs2076304	A	G	8981.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:1,342:1.00:343
chr6	7574805	rs2259208	C	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,66:0.50:131
chr6	7576527	rs1016835	G	A	8282.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr6	7577260	rs2064217	C	T	2303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-1.519;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:102,116:0.53:218
chr6	7577354	rs2064218	C	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr6	7578189	rs6942260	G	A	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:150,145:0.49:295
chr6	7578819	rs2806229	T	G	7586.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	7578823	rs2842691	G	A	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.69;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	7579363	rs2806227	A	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr6	7579393	rs2744379	CA	TG	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;JOINED;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr6	7579412	rs2806225	A	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr6	7585967	rs2744380	G	C	3691.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:185,171:0.48:356
chr6	7590653	rs2744384	A	G	3369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.430;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:101,163:0.62:264
chr6	7590682	rs113375395	A	G	3389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=1.612;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:90,159:0.64:249
chr6	7590802	rs2744385	G	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr6	7601776	rs7739209	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr6	7602857	rs9502622	C	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.200;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:47,38:0.45:85
chr6	7605560	rs7747290	T	C	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-1.205;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:59,90:0.60:149
chr6	7606255	rs2757597	G	A	6592.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:274,334:0.55:608
chr6	7608863	rs1535433	T	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=0.569;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr6	7608955	rs141993061	A	ATATTACTGTTGAAAGTGGTG	901.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=0.948;SOR=2.022;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr6	7609117	rs1535434	T	C	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=0.203;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr6	7727271	rs111588693	G	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr6	7986654	rs197128	A	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr6	7987883	rs6597293	G	C	5284.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:209,261:0.56:470
chr6	8016089	rs2057185	C	T	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:45,63:0.58:108
chr6	8054562	rs9505348	T	C	13002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=1078;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.005;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:423,647:0.60:1070
chr6	8073858	rs67471655	CAG	C	1596.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;MQ=60.39;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr6	8417521	rs6905235	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.84;ReadPosRankSum=0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	9616231	rs143324041	A	AGAAGAAGAG,AGAAGAAGAAGAG	6314.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.704;MLEAC=1,1;MLEAF=0.500,0.500;MQ=65.50;MQRankSum=-2.127;QD=27.34;ReadPosRankSum=2.722;SOR=1.322;set=HC	GT:AD:AF:DP	1/2:7,19,205:0.08,0.89:231
chr6	9697913	.	G	C	4858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DP=435;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-0.480;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:191,238:0.55:429
chr6	9750430	rs10949284	T	C	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:164,119:0.42:283
chr6	9750730	rs375191856	GTAATAATAA	G	87.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	9776058	rs9367875	G	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr6	9776194	rs9370818	A	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr6	9795438	rs145138381	AGAG	A	1735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.934;QD=21.43;ReadPosRankSum=0.141;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:33,48:0.59:81
chr6	9795472	.	A	AAGG	898.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=6.058;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=2.934;QD=33.29;ReadPosRankSum=0.811;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:3,24:0.89:27
chr6	9795492	.	G	GGAGGAGGAGGAGGAA	1481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=2.223;QD=20.02;ReadPosRankSum=2.475;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:29,45:0.61:74
chr6	9795549	rs70988144	G	GAGA	1960.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.47;MQRankSum=-0.682;QD=40.01;ReadPosRankSum=1.240;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr6	9795586	.	G	GGAAGAAGAAGAAGAAGAAGAA	1835.73	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=65.56;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	9809724	rs13204197	T	C	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=0.661;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:71,56:0.44:127
chr6	9809801	.	T	A	6807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DP=638;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-0.031;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:298,335:0.53:633
chr6	9860514	rs150538680	C	CA	829.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-0.639;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:14,54:0.79:68
chr6	9900599	rs59046538	T	TGAG	6331.73	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:181,161:0.47:342
chr6	9903504	rs11757589	A	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.833;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr6	9903626	rs56839110	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=0.502;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:110,36:0.25:146
chr6	9921906	rs1925773	T	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr6	9921922	rs1925774	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr6	9921965	rs35153317	CATT	C	508.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr6	9922006	rs1925775	A	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	10159481	rs34201263	G	A	4487.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:113,206:0.65:319
chr6	10398562	rs10456013	G	T	6708.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:250,323:0.56:573
chr6	10430171	rs303061	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:89,56:0.39:145
chr6	10557726	rs34815041	CT	C	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.194;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr6	10587038	rs539351	C	G	19180.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,745:1.00:745
chr6	10634960	rs34276843	AT	A	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.352;QD=4.58;ReadPosRankSum=-0.383;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr6	10647159	rs112116105	T	TA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-1.463;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr6	10687602	rs111468923	G	A	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-1.277;QD=11.36;ReadPosRankSum=-0.152;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr6	10724943	rs4711068	T	C	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chr6	10729020	rs2153073	C	T	5023.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:232,256:0.52:488
chr6	10764727	rs126405	A	G	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:280,127:0.31:407
chr6	10775446	rs478791	T	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr6	10785011	rs113945134	C	CCAGA	8840.73	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:456,239:0.34:695
chr6	10785227	rs70991044	AAAG	A	2451.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:121,69:0.36:190
chr6	10785263	rs6936890	C	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr6	10792197	rs521802	T	C	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:93,60:0.39:153
chr6	10802045	rs569418	C	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-0.323;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr6	10802101	rs4712966	G	A	1478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-1.384;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:208,93:0.31:301
chr6	10814091	rs6909367	A	G	3456.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:253,182:0.42:435
chr6	10819094	rs2272883	G	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr6	10875238	rs2076257	T	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	10876036	rs2076258	C	T	4924.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	10882100	rs2153156	G	A	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	10887251	rs9366663	T	C	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=45.58;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	10887251	.	TCG	CCC	2077	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=2;HapScore=1;MGOF=29;MMLQ=23;MQ=59.9;NF=77;NR=42;PP=2077;QD=17.9030913854;SC=CAGGGCTCTTTCGGCAGCGCC;SbPval=0.57;Source=Platypus;TC=124;TCF=79;TCR=45;TR=119;WE=10887261;WS=10887241;set=Platypus	GT:AD:AF:DP	1/1:5,119:0.96:124
chr6	10887253	rs9358956	G	C	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=43.70;SOR=1.275;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	10887276	rs9348724	C	G	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	10891781	rs1538441	C	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.27;QD=25.03;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	10891842	rs370221082	CTCTCTG	C	1878.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.76;QD=42.70;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	10891892	rs12523744	G	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=41.72;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	10894255	rs9368453	G	A	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	10894268	rs6456745	A	G	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	10898981	rs9357018	A	G	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	10911282	rs4713044	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr6	10924992	rs1225764	A	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	10931587	rs1225729	T	C	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	10942994	rs34079965	CT	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=-0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.15;ReadPosRankSum=0.456;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr6	10955408	rs1225746	C	T	12623.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr6	10955594	rs1225747	T	C	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	10989873	rs5874298	C	CA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.194;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr6	10989942	rs12195587	G	A	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:108,167:0.61:275
chr6	11094571	rs149856795	C	T	6206.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:223,306:0.58:529
chr6	11094681	rs2273884	G	T	2392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-0.326;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:81,128:0.61:209
chr6	11094764	rs36067344	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr6	11104251	rs55893495	A	G	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:81,121:0.60:202
chr6	11105361	rs55899211	C	T	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:96,152:0.61:248
chr6	11134494	rs16870978	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	11185257	rs10601	A	T	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr6	11185533	rs1050775	G	A	15555.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:3,588:0.99:591
chr6	11185967	rs6456968	T	C	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	11190075	rs17495484	T	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr6	11190626	rs941982	A	G	11905.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr6	11192522	rs5874310	C	CT	25266.73	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr6	11192575	rs1465131	C	T	20896.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	1/1:2,794:1.00:796
chr6	11192829	rs34998457	C	CT	960.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.83;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	11193730	rs16871072	A	C	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.722;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=13.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=-1.466;SOR=0.052;set=HC	GT:AD:AF:DP	0/1:14,40:0.74:54
chr6	11194093	.	C	CT	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=-0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.24;ReadPosRankSum=-1.089;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr6	11200421	rs2078599	C	T	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	11201437	rs9368610	C	T	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	11214705	rs1009667	G	A	4612.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:321,246:0.43:567
chr6	11232567	rs72827151	C	T	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:49,78:0.61:127
chr6	11232588	rs3215815	G	GC	2578.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:135,88:0.39:223
chr6	11233468	rs114587388	T	C	13292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=1027;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-1.213;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:384,628:0.62:1012
chr6	11233801	rs72827152	C	T	5543.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:261,281:0.52:542
chr6	11306153	rs16871236	C	T	2038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.783;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=0.355;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:177,113:0.39:290
chr6	11306381	rs16871239	T	C	3625.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:255,189:0.43:444
chr6	11538534	rs821443	C	T	15348.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.880;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=0.939;SOR=0.299;set=HC	GT:AD:AF:DP	1/1:1,598:1.00:599
chr6	11714894	rs80355771	G	GA	447.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr6	11717399	rs3765254	C	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	11723538	rs210905	A	G	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=0.493;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:59,34:0.37:93
chr6	11723542	rs2076186	G	A	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-1.584;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:60,40:0.40:100
chr6	11723636	rs2076185	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:210,101:0.32:311
chr6	11723832	rs2076184	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-2.311;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr6	11735768	rs2281127	A	G	6316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=901;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-0.183;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:546,351:0.39:897
chr6	11735980	rs3830755	TTC	T	510.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr6	11770103	rs9380513	C	A	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:122,92:0.43:214
chr6	11770114	rs9394302	T	G	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:156,122:0.44:278
chr6	11770334	rs148298172	TA	T	1125.73	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:141,83:0.37:224
chr6	12016009	rs6916066	G	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr6	12122645	rs6900196	A	G	21571.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:0,821:1.00:821
chr6	12123249	rs2228220	A	G	6796.77	.	AC=1;AF=0.500;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	0/1:512,364:0.42:876
chr6	12124587	rs2228212	C	G	13883.77	.	AC=1;AF=0.500;AN=2;DB;DP=1300;set=Intersection	GT:AD:AF:DP	0/1:602,683:0.53:1285
chr6	12125772	rs1126472	A	G	6874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=797;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-1.152;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:419,363:0.46:782
chr6	12129936	rs3734271	T	G	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.358;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:143,114:0.44:257
chr6	12165363	rs219950	C	T	9513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.046;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:494,488:0.50:982
chr6	12290728	rs1800997	TA	T	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr6	12292772	rs2070699	G	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:203,115:0.36:318
chr6	12294137	rs1800543	T	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr6	12294258	rs5369	A	G	12056.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr6	13182685	rs3778646	G	T	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chr6	13273318	rs202054	A	G	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	13278648	rs3817735	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	13281412	rs3846903	A	G	11711.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr6	13288535	rs202040	C	T	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	13288578	rs202039	G	A	7223.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr6	13288648	rs202038	A	G	10960.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr6	13288679	rs67298859	GCT	G	13882.73	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr6	13288737	rs202036	T	A	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	13294866	rs6910418	G	A	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	13295502	rs4602719	T	C	11182.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr6	13295515	rs1550526	A	C	12294.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr6	13295536	rs454563	C	T	13112.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr6	13295752	rs35194435	AG	A	1978.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	13316780	rs56980190	CA	C	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.642;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=1.993;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.750;QD=1.38;ReadPosRankSum=-1.177;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:229,84:0.27:313
chr6	13361088	rs2496162	A	G	3824.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:96,175:0.65:271
chr6	13365913	rs9367440	C	G	6718.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:212,302:0.59:514
chr6	13470113	rs766773	A	T	16363.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr6	13487174	rs62385806	C	T	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:102,78:0.43:180
chr6	13584590	.	C	CT	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=2.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.937;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:122,30:0.20:152
chr6	13794044	rs6922822	T	C	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:119,59:0.33:178
chr6	13794110	rs4715568	C	A	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	13814338	rs12206286	G	A	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-1.640;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:167,74:0.31:241
chr6	13814340	rs1204145	T	C	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	14131804	rs7743206	G	A	16404.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr6	15373652	rs11757092	T	A	11830.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr6	15374508	rs9383050	A	G	4309.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	15468876	rs7768621	C	G	10837.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr6	15501726	rs41267698	G	A	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	15504589	rs760659	T	C	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	15511409	rs35360051	C	T	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	15511429	rs55742636	C	CCCAT	8540.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	15513482	rs2235258	G	A	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	15513664	rs201516733	C	A	8480.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.762;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=4.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=2.052;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:337,228:0.40:565
chr6	15513664	.	CT	AG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=24;MQ=60.0;NF=50;NR=69;PP=2944;QD=20;SC=GTGAGCCCGCCTGGCCCTGCC;SbPval=0.58;Source=Platypus;TC=302;TCF=131;TCR=171;TR=119;WE=15513685;WS=15513654;set=Platypus	GT:AD:AF:DP	1/0:183,119:0.39:302
chr6	15513665	rs202086939	T	G	8469.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.061;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=2.193;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:336,225:0.40:561
chr6	15513668	.	CCCTGCCGGCG	C	8227.73	.	AC=1;AF=0.500;AN=2;DP=559;set=Intersection	GT:AD:AF:DP	0/1:332,219:0.40:551
chr6	15520920	rs112303618	G	GCA	8244.73	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:52,274:0.84:326
chr6	15524563	rs2056943	T	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr6	15586009	rs6926401	G	T	8787.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr6	15593319	.	GA	G	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=5.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.900;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:91,35:0.28:126
chr6	15651642	.	G	GA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.227;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr6	15660871	rs909706	T	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	15663118	rs11558324	T	C	30732.77	.	AC=2;AF=1.00;AN=2;DB;DP=1208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,1185:1.00:1185
chr6	16129498	rs3765234	G	T	4065.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:114,199:0.64:313
chr6	16145325	rs9370867	A	G	20328.77	.	AC=2;AF=1.00;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	1/1:1,779:1.00:780
chr6	16147098	rs35112615	T	TA	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=8.043;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.296;QD=6.74;ReadPosRankSum=-0.975;SOR=2.124;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr6	16250642	.	G	T	5319.77	.	AC=1;AF=0.500;AN=2;DP=693;set=Intersection	GT:AD:AF:DP	0/1:392,283:0.42:675
chr6	16290761	rs1042391	T	A	5446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-0.005;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:468,300:0.39:768
chr6	16290862	rs6926552	T	C	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:97,80:0.45:177
chr6	16306751	rs16885	G	A	17633.77	.	AC=1;AF=0.500;AN=2;DB;DP=1499;set=Intersection	GT:AD:AF:DP	0/1:636,846:0.57:1482
chr6	16326587	rs78115249	G	A	4910.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:134,234:0.64:368
chr6	16326941	.	T	A	3560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DP=1321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=1.578;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:1020,289:0.22:1309
chr6	16327615	rs179990	A	G	12232.77	.	AC=1;AF=0.500;AN=2;DB;DP=1226;set=Intersection	GT:AD:AF:DP	0/1:506,650:0.56:1156
chr6	16327864	.	G	GTGC	2187.73	.	AC=1;AF=0.500;AN=2;DP=783;set=Intersection	GT:AD:AF:DP	0/1:290,140:0.33:430
chr6	16327906	.	CTGA	C	952	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=28;NF=9;NR=72;SC=GCTGCTGCTGCTGATGCTGAT;SbPval=0.91;Source=Platypus;TC=229;TCF=40;TCR=189;TR=81;WE=16327925;WS=16327896;set=Platypus	GT:AD:AF:DP	0/1:148,81:0.35:229
chr6	16761715	rs371878187	TCTC	T	6956.73	.	AC=1;AF=0.500;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	0/1:286,191:0.40:477
chr6	17102429	rs9367941	G	A	3824.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:248,200:0.45:448
chr6	17102574	rs145164002	TAAAC	T	9064.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.22;ReadPosRankSum=-0.541;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:159,249:0.61:408
chr6	17102596	rs1473744	A	G	5533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=1.788;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:162,253:0.61:415
chr6	17102600	rs2147230	A	G	14877.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.25;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr6	17115478	rs17621526	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr6	17282415	rs1108512	G	C	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:116,70:0.38:186
chr6	17493690	rs751502	C	G	11330.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,443:1.00:443
chr6	17513954	rs4716146	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	17541484	rs4716155	G	T	2437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=0.506;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:95,68:0.42:163
chr6	17541490	rs4716156	G	A	2395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.30;ReadPosRankSum=0.194;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:84,63:0.43:147
chr6	17543036	rs2296249	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	17543302	rs9256	A	G	4148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.420;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=1.341;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:365,229:0.39:594
chr6	17606413	rs1969830	C	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	17616493	rs7765156	C	G	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	17616513	rs3836949	T	TG	3023.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.048;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=2.018;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:4,113:0.97:117
chr6	17628841	rs11422297	T	TA	726.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr6	17629616	rs942467	G	A	11581.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr6	17633033	rs61744976	G	C	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:61,91:0.60:152
chr6	17633061	rs2274136	C	T	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr6	17675386	rs11418400	G	GA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=0.425;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:225,46:0.17:271
chr6	17688798	rs1065057	G	A	14796.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr6	17764530	rs9371018	C	T	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:239,146:0.38:385
chr6	17777614	rs11396690	C	CT	3122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.839;QD=7.31;ReadPosRankSum=-1.516;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:196,231:0.54:427
chr6	17777654	rs1886247	G	A	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:89,136:0.60:225
chr6	17779476	.	ATATATATATATATTTTTTTTTTTTTTTTT	A	452.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr6	17779731	rs9477524	G	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=1.456;QD=5.25;ReadPosRankSum=0.369;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr6	17785948	rs4716186	A	G	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=26.36;SOR=1.185;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	17785981	rs10686772	C	CAA	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-0.883;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr6	17787886	rs148516660	C	CAACAAA	1907.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.483;QD=24.78;ReadPosRankSum=-0.897;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:30,47:0.61:77
chr6	17790191	rs2147211	A	G	2677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=1.494;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:92,129:0.58:221
chr6	17794494	rs3734234	G	A	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:213,135:0.39:348
chr6	17796774	rs10672591	C	CT	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=1.718;QD=4.19;ReadPosRankSum=0.190;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr6	17799575	rs3734235	A	G	4393.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:128,216:0.63:344
chr6	17799766	rs6459573	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	17800131	rs41267716	G	T	3855.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:430,234:0.35:664
chr6	17809199	rs6913612	G	A	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	17815716	rs6920106	C	T	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:102,61:0.37:163
chr6	17817235	rs9383327	C	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	17821965	rs12205910	A	G	7468.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:313,380:0.55:693
chr6	17825888	rs7771879	T	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr6	17831419	rs2277080	G	A	12795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=1071;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=0.090;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:434,628:0.59:1062
chr6	17834198	rs4716189	T	G	10858.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:196,275:0.58:471
chr6	17834213	rs4716190	T	C	11576.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:225,308:0.58:533
chr6	17834316	rs4716191	T	C	6778.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:236,335:0.59:571
chr6	17834328	rs4716192	G	A	5889.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:219,282:0.56:501
chr6	17834346	rs4716193	A	G	4826.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:176,228:0.56:404
chr6	17855864	rs624105	G	C	7156.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	17873560	rs41267728	A	C	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:268,176:0.40:444
chr6	17882140	rs7757737	A	T	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	17951668	rs112683346	T	TA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-1.038;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:86,23:0.21:109
chr6	18134008	rs113956700	G	GA	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.701;QD=3.73;ReadPosRankSum=-0.005;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:51,27:0.35:78
chr6	18134021	rs2842949	C	A	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.929;QD=13.80;ReadPosRankSum=-0.712;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:51,46:0.47:97
chr6	18139214	rs2842934	G	A	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:72,109:0.60:181
chr6	18139964	rs375276814	GA	G	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-0.305;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr6	18148019	rs4449636	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr6	18148247	rs12529220	T	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.188;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr6	18149526	rs3930696	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr6	18161563	rs4716224	G	A	6139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=2.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-1.222;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:239,291:0.55:530
chr6	18161817	rs12664350	C	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.220;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:40,33:0.45:73
chr6	18166802	rs912528	T	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	18171477	rs1011620	G	A	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	18187916	rs372534	C	T	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	18188091	rs429158	T	C	9549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=1280;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=1.067;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:743,526:0.41:1269
chr6	18201961	rs214612	T	C	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	18207876	rs214598	G	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr6	18208319	rs214596	G	A	2043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.097;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:143,108:0.43:251
chr6	18215303	rs214585	T	C	17053.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,658:1.00:658
chr6	18222100	rs3734242	C	T	5546.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:165,258:0.61:423
chr6	18237661	rs1013062	C	T	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.570;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:47,73:0.61:120
chr6	18256224	rs58144742	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.435;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr6	18264210	rs11544757	G	A	6344.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:226,309:0.58:535
chr6	18264658	rs9383352	G	A	1708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.045;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:68,84:0.55:152
chr6	18368880	rs11757266	G	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:63,38:0.38:101
chr6	18387953	rs9371052	A	C	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:107,146:0.58:253
chr6	18399750	rs2296198	T	C	9769.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr6	18406387	rs6925570	G	A	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=0.865;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:46,65:0.59:111
chr6	18427753	rs17627311	T	C	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:169,104:0.38:273
chr6	18439739	rs2277081	T	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr6	18463633	rs9371061	C	T	3037.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:287,172:0.37:459
chr6	18572233	rs9396886	A	C	8442.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:227,398:0.64:625
chr6	19837966	rs1047316	T	C	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.34;ReadPosRankSum=0.622;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	19837969	rs12662234	A	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=1.740;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr6	20128852	rs77837628	T	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr6	20144637	rs1202195	G	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	20212200	.	A	AAC,AACAC	2777.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=94;set=Intersection	GT:AF:DP	1/2:0.44,0.52:87
chr6	20548763	rs370920469	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.203;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr6	20740007	rs9465875	G	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr6	20758704	rs2820000	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr6	20758760	rs10946406	A	G	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.415;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:39,39:0.50:78
chr6	20758808	.	G	GT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.012;QD=0.35;ReadPosRankSum=0.562;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:126,24:0.16:150
chr6	20758943	rs2820001	G	T	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	21065450	rs56087852	A	G	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:390,288:0.42:678
chr6	22136879	rs6921113	G	T	4976.77	.	AC=1;AF=0.500;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	0/1:505,285:0.36:790
chr6	22136938	rs6900792	T	C	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:278,136:0.33:414
chr6	22146799	.	T	TTTC	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=12.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.531;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr6	22146818	rs5874858	AT	A	819.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.381;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.857;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.567;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:5,53:0.91:58
chr6	22292976	rs1205955	A	T	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=-0.017;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:49,97:0.66:146
chr6	22570189	rs6922960	T	C	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr6	22570245	rs6900627	G	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	24174955	rs9358755	G	C	8523.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr6	24291203	rs2274305	T	C	18466.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,723:1.00:723
chr6	24302087	rs807703	G	A	15892.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr6	24353742	rs813227	A	G	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:77,142:0.65:219
chr6	24412567	rs200245617	G	A	6317.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:205,311:0.60:516
chr6	24418348	rs2793422	G	A	5407.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	24418581	rs2753925	A	T	825.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.58;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	24437445	rs1772256	G	A	15896.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr6	24437458	rs1042303	T	C	15429.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr6	24445718	rs793714	A	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	24448061	rs796985	A	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	24460679	rs2793434	T	C	230.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	24460707	rs2744576	A	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	24463055	rs2793442	A	G	11227.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr6	24467633	rs2793445	C	T	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr6	24473008	rs200759794	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.042;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr6	24474018	rs35864956	G	C	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	24475517	rs66707391	TATTA	T	8311.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	24476553	rs760904	G	A	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr6	24556675	rs807538	A	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	24559433	rs3903801	A	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	24596478	rs4576240	T	G	38385.77	.	AC=2;AF=1.00;AN=2;DB;DP=1472;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,1447:1.00:1447
chr6	24651352	rs11370284	T	TA	245.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.916;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr6	24651388	rs3181244	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr6	24653376	rs1129644	G	A	4684.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:165,217:0.57:382
chr6	24659071	rs2143340	A	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr6	24666320	rs11456603	T	TA	2364.73	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:139,148:0.52:287
chr6	24667205	rs17243164	T	TCC	10835.73	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:197,279:0.59:476
chr6	24687765	rs926529	A	G	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:157,173:0.52:330
chr6	24687933	rs36025667	A	AT	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-1.054;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr6	24780892	rs1923185	A	C	4376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=2.197;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:155,213:0.58:368
chr6	24797647	rs2251702	A	G	3689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=4.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=-0.009;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:119,170:0.59:289
chr6	24806594	rs9358799	C	T	19083.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,742:1.00:742
chr6	24806739	rs5875006	C	CTT	9177.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	24806752	rs4074420	A	C	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	24806777	rs9379689	T	A	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	24809771	rs9379692	A	G	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	24809853	rs9393587	C	T	11174.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:1,418:1.00:419
chr6	24809881	rs9358801	T	A	19219.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:0,732:1.00:732
chr6	24825511	rs9358804	A	G	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	24828318	rs35374726	C	T	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	24828560	rs45437991	A	G	3162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.057;QD=14.92;ReadPosRankSum=0.094;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:108,104:0.49:212
chr6	24828566	rs72205632	CCATT	C,CCATTCATT	5492.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;QD=35.90;SOR=1.334;set=HC	GT:AD:AF:DP	1/2:0,95,58:0.62,0.38:153
chr6	24836161	rs6901565	C	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	24848568	.	T	C	446.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr6	24850715	rs7761191	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr6	24852751	rs9467333	C	A	8454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=980;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.012;QD=8.69;ReadPosRankSum=0.238;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:524,449:0.46:973
chr6	24852962	rs4421189	T	C	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:71,160:0.69:231
chr6	24869300	rs2817747	T	C	7472.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:265,376:0.59:641
chr6	24871021	rs2817748	C	A	6213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.214;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-2.962;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:209,299:0.59:508
chr6	24871032	rs2817749	G	A	6969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=-1.723;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:241,340:0.59:581
chr6	25082262	rs12197057	T	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	25084691	rs303007	C	T	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	25084718	rs303006	A	G	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:6,352:0.98:358
chr6	25086968	rs895673	G	A	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:76,48:0.39:124
chr6	25092031	rs9654585	T	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	25097450	rs392852	T	C	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	25106745	rs2295737	A	G	8369.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr6	25106783	rs1923195	G	A	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	25108989	rs3215685	AC	A	9028.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	25108991	rs79916468	C	T	9037.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	25279208	rs6908902	A	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.94;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	25279282	rs77507030	TC	GA	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;JOINED;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr6	25279839	rs377675604	CT	C	690.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:7,51:0.88:58
chr6	25280119	rs6914799	C	A	6443.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr6	25420344	rs913455	C	G	18356.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.38;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,534:1.00:534
chr6	25420350	rs41271807	A	C	4692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=0.331;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:328,251:0.43:579
chr6	25426640	rs5875038	AT	A	2179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=9.032;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.808;QD=6.39;ReadPosRankSum=1.323;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:109,232:0.68:341
chr6	25435758	rs9467515	A	G	16268.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:4,649:0.99:653
chr6	25450026	rs9295661	C	A	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	25452220	rs6934330	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=1.657;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr6	25452222	rs67754981	CT	C	163.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=1.644;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr6	25452223	rs55733029	T	C	244.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.257;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr6	25452453	.	A	AT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.732;QD=1.79;ReadPosRankSum=0.161;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr6	25471559	rs144894905	G	GT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.458;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr6	25472787	rs9393646	G	A	6201.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:201,299:0.60:500
chr6	25492296	rs1034051	C	T	11727.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr6	25492364	rs1034050	A	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	25509976	rs4568443	T	C	8320.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr6	25510051	rs3915740	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.49;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	25510058	rs4559085	G	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	25510648	rs7453991	TA	CG	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	25511008	rs34965228	C	CAT	3255.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	25516126	rs301379	C	T	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	25516158	rs301378	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	25557132	rs34575637	G	GT	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=4.193;QD=1.11;ReadPosRankSum=-0.488;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:154,46:0.23:200
chr6	25689378	rs11327870	AT	A	2641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.920;QD=6.90;ReadPosRankSum=-1.005;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:167,216:0.56:383
chr6	25701691	rs6928384	C	G	4255.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	25726343	rs6940348	C	T	6183.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:257,302:0.54:559
chr6	25726621	rs9467583	C	T	12376.77	.	AC=1;AF=0.500;AN=2;DB;DP=1060;set=Intersection	GT:AD:AF:DP	0/1:461,587:0.56:1048
chr6	25769349	rs1892251	T	C	3833.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:402,225:0.36:627
chr6	25769440	rs78843371	A	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:179,76:0.30:255
chr6	25770760	rs9467594	G	C	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr6	25777299	rs79746315	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr6	25798932	rs1165215	G	A	6797.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr6	25801057	rs1165210	T	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	25813150	rs1165196	G	A	13200.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:1,517:1.00:518
chr6	25849620	rs942379	A	G	10207.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:1,408:1.00:409
chr6	25849779	rs1165189	A	C	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,232:0.99:234
chr6	25849838	rs1165188	A	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr6	25862466	rs1165165	C	T	8046.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr6	25914801	rs2071299	G	A	7013.77	.	AC=1;AF=0.500;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	0/1:329,360:0.52:689
chr6	25914901	rs2071298	G	A	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:88,109:0.55:197
chr6	25916979	rs1865760	C	T	8684.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:286,428:0.60:714
chr6	25918688	rs3752421	G	A	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:93,121:0.57:214
chr6	25924134	rs111909699	C	T	3177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-0.326;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:125,155:0.55:280
chr6	25924158	rs1540273	T	C	2566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=1.198;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:105,126:0.55:231
chr6	25925823	rs7770139	A	G	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:67,118:0.64:185
chr6	26017542	rs16891235	T	C	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:383,200:0.34:583
chr6	26021813	rs9467664	A	T	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	26022244	rs3734528	A	G	4266.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:353,228:0.39:581
chr6	26031868	rs2213284	G	A	12732.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr6	26033354	rs111714517	C	G	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:121,143:0.54:264
chr6	26033506	rs2230655	G	A	17519.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:1,676:1.00:677
chr6	26033809	rs3842706	T	TAAG	25559.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.82;ReadPosRankSum=-1.905;SOR=1.181;set=HC	GT:AD:AF:DP	1/1:2,951:1.00:953
chr6	26033843	rs76616834	C	T	4249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=3.588;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:303,211:0.41:514
chr6	26044369	rs2032447	A	G	7076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.584;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:244,194:0.44:438
chr6	26044373	rs13195692	C	T	6854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=1.417;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:234,179:0.43:413
chr6	26044564	rs74855812	C	T	5219.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:191,257:0.57:448
chr6	26045929	rs3752416	T	C	8047.77	.	AC=1;AF=0.500;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	0/1:554,427:0.44:981
chr6	26046134	rs113565771	G	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:53,78:0.60:131
chr6	26056399	rs61748580	G	A	4797.77	.	AC=1;AF=0.500;AN=2;DB;DP=950;set=Intersection	GT:AD:AF:DP	0/1:652,292:0.31:944
chr6	26056477	rs41266787	A	C	3439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=897;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.603;QD=3.84;ReadPosRankSum=0.537;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:655,240:0.27:895
chr6	26056549	rs10425	A	G	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:443,183:0.29:626
chr6	26056685	rs112951532	G	A	5495.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:213,267:0.56:480
chr6	26087944	rs62625320	A	G	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:26,66:0.72:92
chr6	26091336	rs2071303	T	C	11092.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr6	26094367	rs1572982	G	A	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	26096748	rs1045537	G	C	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:369,199:0.35:568
chr6	26104071	rs10636318	G	GAAAAAA	1025.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.74;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	26107589	rs148810956	GAT	G	1180.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr6	26124159	rs111914406	G	A	6537.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:198,312:0.61:510
chr6	26124442	rs112692109	T	C	12187.77	.	AC=1;AF=0.500;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	0/1:348,568:0.62:916
chr6	26189312	rs79868973	CC	GG	13140.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;JOINED;set=Intersection	GT:AD:AF:DP	0/1:366,344:0.48:710
chr6	26189421	rs114555315	G	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,51:0.69:74
chr6	26197493	rs41266801	C	A	11585.77	.	AC=1;AF=0.500;AN=2;DB;DP=1128;set=Intersection	GT:AD:AF:DP	0/1:538,582:0.52:1120
chr6	26199014	rs34550794	G	A	3673.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:124,167:0.57:291
chr6	26199454	rs41266803	C	T	7087.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:184,325:0.64:509
chr6	26199524	rs438534	A	G	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	26199678	rs41266805	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr6	26199822	rs41266807	A	G	13800.77	.	AC=1;AF=0.500;AN=2;DB;DP=1103;set=Intersection	GT:AD:AF:DP	0/1:431,643:0.60:1074
chr6	26200083	rs1059486	A	G	32674.77	.	AC=2;AF=1.00;AN=2;DB;DP=1214;set=Intersection	GT:AD:AF:DP	1/1:2,1200:1.00:1202
chr6	26200256	rs16891397	C	T	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:154,283:0.65:437
chr6	26205052	rs61910695	G	A	19074.77	.	AC=1;AF=0.500;AN=2;DB;DP=1728;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:795,920:0.54:1715
chr6	26216584	rs16891427	C	T	8952.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:266,418:0.61:684
chr6	26217728	rs1997768	A	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr6	26225712	rs113937141	G	A	29937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=2483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.182;QD=12.11;ReadPosRankSum=-0.347;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:1017,1456:0.59:2473
chr6	26234476	rs16891458	A	C	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:83,107:0.56:190
chr6	26234554	.	G	C	2740.77	.	AC=1;AF=0.500;AN=2;DP=354;set=Intersection	GT:AD:AF:DP	0/1:200,146:0.42:346
chr6	26234883	rs2050950	A	G	7193.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:230,336:0.59:566
chr6	26234952	rs2050948	A	G	7047.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:239,344:0.59:583
chr6	26240597	rs73736567	G	A	1726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=2.212;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:231,106:0.31:337
chr6	26240624	rs3734533	A	G	9128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.822;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:231,415:0.64:646
chr6	26240752	rs16891477	C	T	16576.77	.	AC=1;AF=0.500;AN=2;DB;DP=1276;set=Intersection	GT:AD:AF:DP	0/1:469,789:0.63:1258
chr6	26250254	rs11759720	C	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr6	26271713	rs9393690	A	T	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr6	26285503	rs41266829	C	T	13240.77	.	AC=1;AF=0.500;AN=2;DB;DP=2019;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:1258,752:0.37:2010
chr6	26285560	rs2393592	A	G	51910.77	.	AC=2;AF=1.00;AN=2;DB;DP=1987;set=Intersection	GT:AD:AF:DP	1/1:0,1969:1.00:1969
chr6	26285683	rs2393593	T	C	43393.77	.	AC=2;AF=1.00;AN=2;DB;DP=1668;set=Intersection	GT:AD:AF:DP	1/1:0,1653:1.00:1653
chr6	26285744	rs16891517	A	G	12889.77	.	AC=1;AF=0.500;AN=2;DB;DP=1020;set=Intersection	GT:AD:AF:DP	0/1:405,607:0.60:1012
chr6	26285759	rs41266831	A	G	6235.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:511,335:0.40:846
chr6	26285867	rs3999544	C	T	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	26365586	rs28362606	T	C	10144.77	.	AC=1;AF=0.500;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	0/1:424,500:0.54:924
chr6	26365679	rs58825580	T	G	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:80,99:0.55:179
chr6	26365702	.	CTGTGTGTGTGTGTGTGTGTG	CTGTGTGTGTGTGTGTGTGTGTG,C	225.74	.	AC=2,0;AF=1.00,0.00;AN=2;DP=103;set=Intersection	GT:AF:DP	1/1:1.00:10
chr6	26368279	rs72841509	G	A	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:67,78:0.54:145
chr6	26368938	rs76764747	C	T	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:107,94:0.47:201
chr6	26370474	rs35307327	C	T	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:108,153:0.59:261
chr6	26370572	rs34878490	C	T	9653.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:330,470:0.59:800
chr6	26370605	rs9379860	T	C	9464.77	.	AC=1;AF=0.500;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	0/1:310,450:0.59:760
chr6	26370616	rs9379861	G	C	9049.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:311,433:0.58:744
chr6	26370657	rs9358936	A	G	18316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.638;QD=23.94;ReadPosRankSum=-0.446;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:305,460:0.60:765
chr6	26370657	.	AAC	GAT	2944	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MGOF=22;MMLQ=23;MQ=59.82;NF=135;NR=120;PP=2944;QD=20;SC=ACAGTGGAGCAACGCCAAGGG;SbPval=0.53;Source=Platypus;TC=435;TCF=231;TCR=204;TR=255;WE=26370667;WS=26370647;set=Platypus	GT:AD:AF:DP	0/1:180,255:0.59:435
chr6	26370659	rs9393711	C	T	18316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.614;QD=24.36;ReadPosRankSum=-0.691;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:297,455:0.61:752
chr6	26370707	rs9379862	T	C	12432.77	.	AC=1;AF=0.500;AN=2;DB;DP=985;set=Intersection	GT:AD:AF:DP	0/1:352,607:0.63:959
chr6	26373086	rs12174623	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr6	26373121	rs12174639	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr6	26373150	rs12174631	C	T	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:57,110:0.66:167
chr6	26373507	rs13216828	G	A	2739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=4.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-1.471;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:117,135:0.54:252
chr6	26373678	rs9393713	G	A	3327.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:112,148:0.57:260
chr6	26373740	rs9393714	G	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr6	26374658	rs2073526	G	A	4992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.140;QD=11.30;ReadPosRankSum=2.365;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:193,249:0.56:442
chr6	26385093	rs2072806	C	G	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr6	26390830	rs2076029	T	C	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-2.523;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr6	26392515	rs2072803	G	C	7704.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:199,355:0.64:554
chr6	26392934	rs2072802	C	T	4798.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:319,239:0.43:558
chr6	26393021	rs1614887	G	A	5093.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:175,233:0.57:408
chr6	26405835	rs56161420	G	A	5003.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:469,278:0.37:747
chr6	26405990	rs17610161	G	A	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:105,66:0.39:171
chr6	26406255	rs3857550	G	A	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr6	26410227	rs7770214	G	A	8434.77	.	AC=1;AF=0.500;AN=2;DB;DP=1266;set=Intersection	GT:AD:AF:DP	0/1:780,481:0.38:1261
chr6	26411228	rs71680074	T	TAA	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.678;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=-0.668;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr6	26411483	rs10946821	C	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr6	26411895	rs12214924	T	C	4072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.862;QD=6.47;ReadPosRankSum=0.551;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:399,230:0.37:629
chr6	26411963	rs12214976	T	A	2208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=6.65;ReadPosRankSum=-0.376;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:208,124:0.37:332
chr6	26411987	rs28571747	T	C	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=0.772;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:135,73:0.35:208
chr6	26413088	rs6900725	T	C	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:170,131:0.44:301
chr6	26413164	rs34577398	CAG	C	1395.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr6	26413368	rs6901245	T	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr6	26413744	rs4712990	C	A	3498.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:270,190:0.41:460
chr6	26413975	rs56190518	C	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:187,89:0.32:276
chr6	26414060	rs56325223	G	T	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:179,103:0.37:282
chr6	26422206	rs55786210	A	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:161,70:0.30:231
chr6	26422260	rs1796522	G	A	18541.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr6	26422307	rs56182232	G	T	3472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=1026;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.36;MQRankSum=-9.623;QD=3.39;ReadPosRankSum=3.109;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:771,254:0.25:1025
chr6	26422336	rs55994013	T	C	7732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DB;DP=1155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.25;MQRankSum=-13.414;QD=6.70;ReadPosRankSum=3.409;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:894,260:0.23:1154
chr6	26422354	rs55775018	C	T	7316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.558;ClippingRankSum=0.000;DB;DP=1162;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=-14.047;QD=6.30;ReadPosRankSum=0.204;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:918,243:0.21:1161
chr6	26422387	rs141260282	C	CCTTCCTCCTCCT	2780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.383;ClippingRankSum=0.000;DB;DP=937;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-15.113;QD=3.20;ReadPosRankSum=-2.039;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:715,154:0.18:869
chr6	26422519	rs111293349	T	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,28:0.30:94
chr6	26422527	rs141119405	TC	T	873.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,25:0.32:79
chr6	26423090	rs12191917	C	T	5228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=7.45;ReadPosRankSum=-0.702;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:424,278:0.40:702
chr6	26423154	rs12198993	T	C	15564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=2226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.200;QD=7.06;ReadPosRankSum=1.077;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:1338,866:0.39:2204
chr6	26423317	rs7745238	G	A	5563.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:374,270:0.42:644
chr6	26423560	rs4320356	C	T	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	26426316	rs10946828	T	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr6	26426487	rs10946829	G	A	9452.77	.	AC=1;AF=0.500;AN=2;DB;DP=1361;set=Intersection	GT:AD:AF:DP	0/1:825,527:0.39:1352
chr6	26426856	rs2076030	G	A	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:87,84:0.49:171
chr6	26428314	rs12201546	G	A	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:124,89:0.42:213
chr6	26428842	rs1741740	A	G	8749.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr6	26430981	rs2893848	A	G	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:207,140:0.40:347
chr6	26431340	rs45499696	A	G	3907.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:238,202:0.46:440
chr6	26431952	rs112870483	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:53,92:0.63:145
chr6	26431982	rs2235251	C	T	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr6	26443853	rs56036950	C	A	6826.77	.	AC=1;AF=0.500;AN=2;DB;DP=1068;set=Intersection	GT:AD:AF:DP	0/1:677,387:0.36:1064
chr6	26444168	rs143665311	C	T	7111.77	.	AC=1;AF=0.500;AN=2;DB;DP=1246;set=Intersection	GT:AD:AF:DP	0/1:826,418:0.34:1244
chr6	26445860	rs3846847	C	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:117,72:0.38:189
chr6	26446209	rs3846848	C	T	8593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=1.629;QD=7.72;ReadPosRankSum=3.670;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:654,459:0.41:1113
chr6	26463321	rs3734540	A	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr6	26466234	rs4712999	A	G	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:153,92:0.38:245
chr6	26468660	rs3734544	G	A	8464.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:246,389:0.61:635
chr6	26501768	rs2295593	C	T	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:82,104:0.56:186
chr6	26505135	rs3736780	C	T	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	26505268	rs149886741	G	A	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:181,135:0.43:316
chr6	26545418	rs16891790	C	T	6710.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:283,334:0.54:617
chr6	26638417	rs144682493	G	A	12449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=1055;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=48.03;MQRankSum=-11.177;QD=11.80;ReadPosRankSum=-0.523;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:436,619:0.59:1055
chr6	27216848	rs1234145	T	C	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.90;SOR=6.518;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	27220519	rs5030967	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr6	27277051	rs41269255	C	T	8479.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr6	27277402	rs6456773	C	T	7605.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr6	27279774	rs17688097	C	T	8508.77	.	AC=1;AF=0.500;AN=2;DB;DP=1316;set=Intersection	GT:AD:AF:DP	0/1:825,480:0.37:1305
chr6	27279877	rs11965377	T	C	12249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=1029;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-0.643;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:435,583:0.57:1018
chr6	27293049	rs17739298	C	G	8217.77	.	AC=1;AF=0.500;AN=2;DB;DP=1202;set=Intersection	GT:AD:AF:DP	0/1:738,452:0.38:1190
chr6	27326863	rs2235232	G	A	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	27327607	rs34125661	GT	G	2710.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:20,164:0.89:184
chr6	27356647	rs62622793	G	A	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:319,198:0.38:517
chr6	27356867	rs4713091	A	G	36598.77	.	AC=2;AF=1.00;AN=2;DB;DP=1407;set=Intersection	GT:AD:AF:DP	1/1:0,1395:1.00:1395
chr6	27356902	rs10807020	A	G	19157.77	.	AC=1;AF=0.500;AN=2;DB;DP=1474;set=Intersection	GT:AD:AF:DP	0/1:898,567:0.39:1465
chr6	27356925	rs10807021	T	G	18198.77	.	AC=1;AF=0.500;AN=2;DB;DP=1307;set=Intersection	GT:AD:AF:DP	0/1:786,512:0.39:1298
chr6	27357308	rs6904883	T	C	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:68,69:0.50:137
chr6	27420588	rs61736957	G	A	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:144,105:0.42:249
chr6	27424443	rs764461	T	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	27424960	rs10484398	G	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr6	27425185	rs1883216	C	A	3693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-1.346;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:317,208:0.40:525
chr6	27435707	rs2272814	G	A	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:149,113:0.43:262
chr6	27440004	rs7750795	A	C	9641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=1497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-0.020;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:935,553:0.37:1488
chr6	27791800	rs113805130	G	T	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:69,96:0.58:165
chr6	27792221	rs200499	C	T	20682.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.77;MQRankSum=-0.864;QD=28.77;ReadPosRankSum=-0.049;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:2,717:1.00:719
chr6	27792228	rs200498	T	C	18652.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.29;MQRankSum=2.297;QD=26.09;ReadPosRankSum=1.961;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:2,713:1.00:715
chr6	27833342	rs11966705	C	T	13412.77	.	AC=1;AF=0.500;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	0/1:300,615:0.67:915
chr6	27833629	rs73386634	T	C	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:42,86:0.67:128
chr6	27834877	rs11970638	T	C	20218.77	.	AC=1;AF=0.500;AN=2;DB;DP=1859;set=Intersection	GT:AD:AF:DP	0/1:856,992:0.54:1848
chr6	28117162	rs6910942	C	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr6	28117443	rs2622322	C	G	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,60:0.63:95
chr6	28121828	rs6908414	A	G	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:64,99:0.61:163
chr6	28197186	rs34477097	C	T	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,90:0.60:149
chr6	28197316	.	T	A	2388.77	.	AC=1;AF=0.500;AN=2;DP=191;set=Intersection	GT:AD:AF:DP	0/1:74,115:0.61:189
chr6	28197469	rs16893827	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	28198281	rs1233713	A	G	8921.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:326,434:0.57:760
chr6	28198456	rs9468317	T	C	4384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=1.874;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:160,214:0.57:374
chr6	28198831	rs2299029	G	A	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:73,100:0.58:173
chr6	28212489	rs7757215	C	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.24;ReadPosRankSum=0.232;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr6	28212748	rs13408	G	A	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:144,177:0.55:321
chr6	28215941	rs73402513	A	C	9054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=1.604;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:358,445:0.55:803
chr6	28219270	rs1736904	G	A	9839.77	.	AC=1;AF=0.500;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	0/1:393,491:0.56:884
chr6	28219661	rs9986596	G	A	9472.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:295,447:0.60:742
chr6	28219695	rs62638680	G	A	11522.77	.	AC=1;AF=0.500;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	0/1:357,555:0.61:912
chr6	28219826	rs1736895	G	A	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:63,134:0.68:197
chr6	28228342	rs1679709	A	G	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:341,196:0.36:537
chr6	28239681	rs2394049	A	G	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:38,75:0.66:113
chr6	28239915	rs11965538	G	A	5132.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:150,235:0.61:385
chr6	28239932	rs61622742	T	TG	12988.73	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr6	28239943	rs11965542	G	A	4657.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:143,205:0.59:348
chr6	28255040	rs1150721	G	C	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr6	28265640	rs2743554	A	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr6	28265829	rs142036301	CAG	C	4481.73	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:67,126:0.65:193
chr6	28268452	rs1936365	G	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr6	28269663	rs1997660	A	G	9579.77	.	AC=1;AF=0.500;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	0/1:346,437:0.56:783
chr6	28294550	rs853684	T	C	8287.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:235,389:0.62:624
chr6	28297313	rs853678	T	A	5689.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:216,290:0.57:506
chr6	28327931	rs34299481	AT	A	978.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:42,65:0.61:107
chr6	28331252	rs213228	A	C	4873.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:198,234:0.54:432
chr6	28331573	rs213227	T	A	3929.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:178,197:0.53:375
chr6	28350239	rs2232440	GC	TG	6500.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;JOINED;set=Intersection	GT:AD:AF:DP	0/1:107,162:0.60:269
chr6	28358195	rs2859379	C	T	3808.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:110,170:0.61:280
chr6	28359170	rs2859348	A	G	8576.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:312,414:0.57:726
chr6	28474218	rs974334	C	G	6406.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:201,311:0.61:512
chr6	29856234	rs368391597	G	T	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=31.03;QD=21.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	29856257	.	G	C	601.77	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.42;QD=75.22;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	29856261	.	G	A	814.77	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.43;QD=50.92;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	29856263	.	G	A	814.77	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.35;QD=40.74;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	29856285	.	C	T	3428.77	.	AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.86;QD=46.97;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	29856287	.	C	G	3428.77	.	AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.05;QD=42.86;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	29856368	rs201445355	C	T	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.54;QD=24.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	29856389	rs199756363	A	G	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.33;QD=24.80;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	29856402	rs114880503	A	C	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.18;QD=24.92;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	29856426	rs2523801	C	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.54;QD=26.05;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	29856438	rs201821855	C	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.94;QD=27.36;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	29858407	rs201648751	G	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.38;QD=23.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	29910496	rs2904759	C	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.24;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	29910506	rs41549214	G	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.24;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	29910558	rs2075684	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.46;QD=31.06;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	29910581	rs1059423	C	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.13;QD=47.29;SOR=6.666;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	29910583	rs1059426	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.40;QD=46.82;SOR=6.804;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	29910586	rs12721672	G	A	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.52;QD=43.46;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	29910604	rs12721675	C	A	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.33;QD=27.66;SOR=2.381;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	29910698	rs1059449	G	A	11604.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.01;QD=45.87;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr6	29910703	rs41541222	G	T	12051.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.30;QD=43.04;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr6	29910834	rs63225861	G	C	9727.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr6	29910923	rs9260147	C	A	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	29910980	rs41552627	C	T	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	29911111	.	ACC	A	10171.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.83;QD=44.61;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	29911114	.	G	T	5812.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.63;MQRankSum=-0.396;QD=26.07;ReadPosRankSum=-0.947;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:2,221:0.99:223
chr6	29911115	.	G	GAA	5803.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.63;MQRankSum=-0.396;QD=26.03;ReadPosRankSum=-0.942;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:2,221:0.99:223
chr6	29911119	rs3173419	G	C	9910.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.20;QD=45.46;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	29911203	rs1059517	A	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.14;QD=30.88;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	29912935	rs2916802	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.27;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	29912944	rs2916803	T	C	280.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.64;QD=35.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	29913042	rs14288	C	T	7266.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr6	30859335	.	A	T	821.77	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=31.64;QD=23.48;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	31322470	rs2442717	C	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	31322762	rs13214791	G	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.98;QD=24.02;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	32489853	rs78961241	A	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.61;QD=43.03;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	32489856	rs77853982	C	A	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.65;QD=45.88;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	32489874	rs140781802	T	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.20;QD=35.15;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	32489877	rs138849995	C	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.34;QD=79.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	32552059	rs17883134	G	T	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.10;QD=44.43;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	32552067	rs17882603	C	T	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.71;QD=43.87;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	32552130	rs9269951	C	A	650.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.06;QD=40.67;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	32552131	rs1136759	C	G	650.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.62;QD=46.48;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	32552132	rs1136758	T	A	650.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.45;QD=54.23;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	32552134	rs1136756	T	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.71;QD=73.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	33382288	rs3116713	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.69;QD=28.48;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	33382457	rs41267647	G	A	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.99;QD=25.67;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	33408465	rs138475712	TTC	T	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=47.89;MQRankSum=-3.217;QD=2.55;ReadPosRankSum=-0.298;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:98,29:0.23:127
chr6	33408680	rs75579703	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.08;QD=26.48;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	33545340	rs2227925	G	A	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	33553239	rs145734633	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	33553580	rs394199	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	33555348	rs4559081	G	A	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	33556605	rs12214669	G	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	33608379	rs4713647	T	C	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	33625592	rs3831080	CTG	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.381;QD=0.44;ReadPosRankSum=0.919;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:97,12:0.11:109
chr6	33630624	rs2296339	C	T	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	33630816	rs2296338	G	A	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	33630846	rs9366827	A	G	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	33631155	rs5875457	TGGGAGG	T	2347.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	33631163	rs3068491	T	C	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	33636232	rs9380372	T	C	11805.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.77;SOR=1.388;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr6	33636907	rs2077163	C	T	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	33641379	rs1803831	T	C	12352.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,487:1.00:487
chr6	33643558	rs2229637	G	A	10207.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr6	33644768	rs2068236	T	C	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	33644773	rs4713652	T	A	6742.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.50;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	33646375	rs116454384	C	T	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.682;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr6	33647594	rs4713653	C	A	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	33647651	rs4713654	A	G	11335.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr6	33648228	rs2229638	C	T	8942.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr6	33653111	rs942637	T	C	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	33654378	rs4640882	A	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	33654897	rs942642	T	C	7605.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr6	33655173	rs2281916	T	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	33656250	rs2296736	T	C	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	33656654	rs11759396	C	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	33656969	rs2296739	G	A	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	33657246	rs3818521	C	T	8160.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr6	33658066	rs764752	G	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	33659472	rs2229642	C	G	6269.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	33659536	rs2296740	A	G	13057.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr6	33659550	rs36034973	C	CG	14851.73	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr6	33659557	rs2296741	C	T	15205.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr6	33659793	rs2296742	G	A	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	33660411	rs653536	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	33660695	rs3818524	G	C	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	33661222	rs3818530	C	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	33668105	rs138192921	G	A	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	33668370	rs942643	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	33679596	rs2274458	A	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	33690796	rs4713668	CA	TG	10518.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr6	33694630	rs138867043	G	A	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	33740382	rs2296744	G	A	8076.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr6	33740592	rs4711349	C	T	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	33744711	rs2296746	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	33744882	rs2296747	C	G	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	33745071	rs2296748	C	T	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	33748831	rs2182658	T	G	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	33752013	rs943479	A	G	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	33754396	rs9394167	A	G	78.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	33754592	rs4711351	G	A	6514.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.979;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=3.199;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.15;ReadPosRankSum=-0.596;SOR=0.374;set=HC	GT:AD:AF:DP	1/1:1,258:1.00:259
chr6	33756026	rs6457741	C	T	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	33768897	rs2281820	A	G	12096.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr6	34003314	rs34906910	A	T	3959.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	34003336	rs2451381	T	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	34003685	rs2228623	T	C	20274.77	.	AC=2;AF=1.00;AN=2;DB;DP=821;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,791:1.00:791
chr6	34008006	rs2229900	A	G	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	34211341	rs35381162	GT	G	7540.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	34212743	rs2780219	A	G	4618.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;MQRankSum=-0.214;QD=24.83;ReadPosRankSum=-0.028;SOR=0.356;set=HC	GT:AD:AF:DP	1/1:1,185:0.99:186
chr6	34213296	rs1150783	T	C	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr6	34214322	rs1150781	C	G	11690.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr6	34214994	rs3997805	G	GTC	1769.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	34499387	rs149949488	T	C	11417.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr6	34558486	rs192853951	C	T	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	34622561	rs145294670	AG	A	5858.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	34622676	rs2252551	A	G	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	34725655	rs34594913	G	GTCA	9759.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=44.16;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr6	34725658	rs28398813	G	T	9736.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=44.66;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	34735652	.	C	CT	443.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.958;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr6	34735676	rs3831083	C	CCTCAT	3185.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	34735883	rs3736896	T	C	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	34738203	rs2038841	T	C	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	34759881	rs13215181	A	G	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=43.01;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	34759884	rs6934662	G	C	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=43.01;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	34759903	.	T	TGGCGGCGGCGGCGGCGGCGGC	2519.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;MQRankSum=-0.204;QD=43.44;ReadPosRankSum=0.476;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:4,54:0.93:58
chr6	34759954	rs6457791	A	G	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=27.35;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	34760162	rs7769961	G	C	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	34760228	rs7769820	C	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	34791027	rs7774697	A	G	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	34803947	rs4259246	C	T	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	34824636	rs11755393	A	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	34825662	rs16894959	T	C	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	34827085	rs9469913	A	T	9098.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr6	34831761	rs9462031	G	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.88;QD=24.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	34831866	rs3734264	G	A	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	34949451	rs3817473	C	T	6934.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr6	34949607	rs2293242	C	T	22376.77	.	AC=2;AF=1.00;AN=2;DB;DP=877;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,862:1.00:862
chr6	34962019	rs11755713	G	C	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	34962060	rs3823438	G	A	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	34977663	rs9380481	C	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=21.23;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	34977679	.	TAAAAAA	T	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.897;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=33.103;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.061;QD=18.95;ReadPosRankSum=-1.511;SOR=3.894;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr6	34977813	rs12661991	A	G	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=25.01;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	35027927	rs820085	T	C	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	35046154	rs820100	T	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	35047579	rs2762338	G	C	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	35047732	rs2689094	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	35050506	rs2177382	G	A	12663.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr6	35053383	rs66645129	CTAGGAAGAG	C	1481.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	35054983	rs71650764	GGCAGCGTAGACGCT	G	6556.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr6	35056443	rs2005	A	G	15994.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr6	35058117	rs707968	A	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	35088956	rs2494096	A	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	35104018	rs12661389	C	A	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	35107682	rs3777748	T	A	385.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	35109032	rs142118879	CGCGGCCTG	C	990.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	35203203	rs13214290	T	G	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	35205541	rs1929849	T	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	35205881	rs734538	G	A	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.531;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	35216296	rs2071920	C	T	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	35258539	rs763157	C	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	35259261	rs1894650	C	G	6370.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	35259646	rs9366883	G	C	6114.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.183;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	35260503	rs1557567	C	T	15830.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr6	35260530	rs1557568	C	T	14661.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr6	35285720	rs2395617	A	C	15613.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:2,617:1.00:619
chr6	35378778	rs2016520	C	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	35391787	rs2076167	C	T	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.908;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	35420628	rs9470029	A	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	35423489	rs7757405	A	G	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	35423662	rs4713867	A	C	7565.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr6	35424188	rs3800377	A	G	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	35424268	rs4713868	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	35425416	rs13214239	A	G	15527.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:2,616:1.00:618
chr6	35443573	rs2076170	T	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	35444349	rs34250016	TACA	T	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=35.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	35448189	rs760782	T	C	13716.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr6	35477025	rs2064318	C	G	9844.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr6	35477152	rs7752728	C	T	13967.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr6	35477303	rs9296155	T	C	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	35478612	rs2273001	G	A	11163.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr6	35479574	rs7764472	G	C	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	35479876	rs2273003	C	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	35480262	rs1540910	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	35610681	rs2143404	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	35705892	rs2817041	T	C	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	35706063	rs56101324	T	TGG	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.81;ReadPosRankSum=0.757;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr6	35715303	rs2252881	G	C	8344.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr6	35745655	rs2478467	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	35747108	rs6910332	G	A	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	35748931	rs34109614	T	C	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	35945219	.	CT	C	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-1.277;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:81,46:0.36:127
chr6	36041431	rs851010	A	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	36064036	rs851007	G	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	36075219	rs9470219	A	C	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	36098333	rs12191295	T	C	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	36098410	rs1059227	A	C	13137.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.36;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,518:1.00:518
chr6	36098497	rs146539855	T	TGGGGGGC	4334.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:4,144:0.97:148
chr6	36103921	rs2252430	G	A	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	36104803	rs2815812	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	36107172	rs2071863	G	A	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	36189887	rs2301422	C	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	36190156	rs2157317	C	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	36260914	rs2239796	C	T	8884.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr6	36261885	rs4713949	A	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	36262991	rs4713951	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	36269603	rs10947600	G	A	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	36270130	rs12199580	C	A	20528.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.396;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.32;ReadPosRankSum=0.186;SOR=0.641;set=HC	GT:AD:AF:DP	1/1:1,779:1.00:780
chr6	36275458	rs4713956	T	C	10818.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr6	36287312	rs743852	G	C	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	36288879	rs112374394	G	GGTCTCAGCT	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	36289145	rs763018	A	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	36290030	rs12190546	C	G	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	36294915	rs6923009	T	A	12700.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr6	36353169	rs6901513	G	A	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	36359695	rs147244815	TTTA	T	715.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;MQRankSum=0.452;QD=29.82;ReadPosRankSum=0.724;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr6	36368169	rs6917489	G	A	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	36393582	.	A	AC	1042.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.40;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	36393583	.	ATATAT	A	1042.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	36393590	rs113872867	T	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	36393592	.	T	A	1121.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	36393594	rs201851804	T	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	36393816	rs664370	A	G	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	36446975	rs2239808	G	C	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr6	36447287	rs2239807	A	G	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	36447556	rs368554277	ATTTT	A	871.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;QD=34.87;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	36452603	rs11450552	T	TA	1196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=1.242;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:54,84:0.61:138
chr6	36465715	rs147832342	CTT	C	1588.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.536;QD=14.19;ReadPosRankSum=-1.175;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:25,87:0.78:112
chr6	36467791	rs659726	C	G	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	36475200	rs16888690	T	C	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	36483295	rs150740806	CCACACACA	CCACA,C	383.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=40;set=Intersection	GT:AF:DP	1/1:0.84:19
chr6	36492269	rs3752479	C	G	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	36492375	rs3752478	T	G	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	36493265	rs605684	T	C	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	36493330	rs6927896	C	T	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	36508036	rs6913714	G	T	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	36569717	rs58662018	C	CT	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.975;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:12,30:0.71:42
chr6	36645588	rs762624	A	C	4766.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	36645696	rs2395655	A	G	6005.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	36652339	rs3176352	C	G	7632.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr6	36686272	rs236487	C	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	36686407	rs236486	C	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	36688962	rs145193181	C	CAGGCTGCCTCCCCTGAGG	8128.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.24;ReadPosRankSum=-0.402;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:2,276:0.99:278
chr6	36689030	rs236478	A	C	12112.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=27.22;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr6	36689961	rs183541	A	C	18765.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.73;ReadPosRankSum=0.781;SOR=0.351;set=HC	GT:AD:AF:DP	1/1:1,701:1.00:702
chr6	36712962	rs743870	C	T	7703.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr6	36713263	rs763046	A	G	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	36714491	rs929051	G	A	158.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	36715833	rs1010790	A	T	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	36715921	rs3213537	C	T	7979.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr6	36723884	rs236443	C	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	36730797	rs236431	A	G	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	36746581	rs236418	C	T	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	36759741	rs9366916	G	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	36759768	rs9349011	C	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	36767920	rs11419511	T	TG	651.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	36790630	rs9394384	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	36790666	rs9366917	G	A	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	36853685	rs11461876	G	GC	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	36853786	rs11461877	A	AG	1892.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	36853857	rs5875560	T	TCGC	7252.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=0.274;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:2,280:0.99:282
chr6	36949527	rs2293390	C	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	36976901	rs6927538	C	A	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	36981433	rs41272208	C	T	15123.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr6	36988664	rs200533829	ATG	A	160.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr6	36990184	rs62406537	T	C	31710.77	.	AC=2;AF=1.00;AN=2;DB;DP=1249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.95;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,1222:1.00:1222
chr6	37138023	rs59116171	GGCA	G	4574.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr6	37140670	rs71773641	AT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.827;QD=0.68;ReadPosRankSum=2.799;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr6	37237550	rs17572320	A	G	9454.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr6	37250112	rs195753	A	G	12857.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr6	37280844	rs149708	A	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	37328399	rs34469147	CT	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.304;QD=2.55;ReadPosRankSum=1.667;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr6	37418263	rs2270687	A	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	37446061	rs3830396	TCA	T	5882.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	37447075	rs2797790	G	A	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	37447994	rs1874736	C	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	37450914	rs10692	T	C	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	37475485	.	G	GTGGTGGTGGGGGGTGGGGGTAGGTGGTGGTGGGGGGTGGGGGGTAGA	727.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DP=303;ExcessHet=3.0103;FS=5.431;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=18.66;ReadPosRankSum=-3.319;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:4,35:0.90:39
chr6	37501967	rs2797786	A	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	37522966	rs6942122	T	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	37611796	rs45511994	G	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	37615258	rs6901281	A	G	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	37620129	rs2273109	G	A	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	37623566	rs3846874	C	T	7372.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr6	37631768	rs10947690	A	G	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr6	37787810	.	TGGGGGCG	T	694.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.40;QD=40.87;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	37897839	rs2273441	C	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	37971449	rs146304338	G	GT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.368;QD=3.65;ReadPosRankSum=1.703;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr6	38084569	rs2295791	C	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	38455368	rs10559751	CGAGA	C	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.26;ReadPosRankSum=0.974;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr6	38472125	rs9380754	GG	CT	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	38472176	rs73426901	A	G	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	38650628	rs4746	T	G	11006.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr6	38670708	rs2277109	C	A	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	38670837	rs1049346	G	A	15748.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,618:1.00:618
chr6	38691081	rs150179552	T	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	38697844	rs12212784	T	G	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	38702111	.	C	CCA	157	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=8;HapScore=2;MGOF=19;MMLQ=27;MQ=63.51;NF=3;NR=1;PP=157;QD=42.75;SC=GACCCCCCCCCAAAAAAATTA;SbPval=0.68;Source=Platypus;TC=4;TCF=3;TCR=1;TR=4;WE=38702119;WS=38702103;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	38702169	rs74904743	C	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	38757378	rs7756191	C	T	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	38794183	rs34231573	A	AT	678.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.000;QD=18.85;ReadPosRankSum=-1.716;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:2,34:0.94:36
chr6	38873960	rs7750330	G	A	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.65;QD=25.55;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	38877605	rs4714198	C	A	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	38885010	rs11291395	TA	T	1244.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=37.72;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	38897453	rs376615002	TA	T	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.732;QD=1.55;ReadPosRankSum=0.637;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr6	38899485	rs9296268	G	C	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	38906072	rs2073037	A	G	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.545;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	38913177	rs522327	A	G	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	38952246	.	GCACACA	G,GCA	866.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.92;MQRankSum=-0.327;QD=20.16;ReadPosRankSum=-1.909;SOR=0.368;set=HC	GT:AD:AF:DP	1/2:3,8,32:0.19,0.74:43
chr6	38952287	rs35676616	G	T	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	38957771	rs3737095	T	C	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	38957853	rs3737094	A	G	8736.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr6	38979946	rs9296273	T	A	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	39016636	rs10305420	C	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	39033602	rs6918287	A	G	7594.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr6	39162206	rs2815098	A	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	39196662	rs2241595	C	A	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	39278848	rs200555541	GCACACA	G	1438.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.737;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.97;ReadPosRankSum=1.431;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:3,37:0.93:40
chr6	39353532	rs10655582	G	GA	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.963;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr6	39580887	rs144405585	C	CT	275.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=-1.477;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr6	39585399	rs2466406	A	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	39682367	rs303701	G	A	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	39693193	rs113412831	A	T	10650.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.084;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr6	39851679	rs2504082	A	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	39893558	rs145146059	C	T	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	40360465	rs3734557	A	G	11246.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr6	41052002	rs6908595	A	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	41169021	rs5875743	C	CA	939.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	41196034	rs6458202	T	C	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=46.51;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	41196040	rs6458203	T	C	1968.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=45.79;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	41196041	rs6458204	C	T	1968.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=43.75;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	41196095	rs6458205	C	T	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=44.08;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	41196104	rs10700462	C	CCTT	5684.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=45.12;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	41196156	rs2803496	C	T	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=26.13;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	41196605	rs9369265	T	C	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	41196727	rs2101269	C	T	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr6	41197785	rs9296357	T	C	8725.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr6	41197857	rs7769759	C	T	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	41198909	rs4337930	T	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	41199973	rs1825409	C	T	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	41200245	rs7746632	A	G	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	41204005	rs9394775	C	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	41204049	rs9394776	C	T	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	41204092	rs9349185	C	T	9552.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=45.49;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr6	41204092	.	CTC	TTG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=3;HapScore=1;MGOF=20;MMLQ=27;MQ=59.98;NF=58;NR=47;PP=2947;QD=20;SC=CCCCACACCCCTCTGTCATCG;SbPval=0.59;Source=Platypus;TC=107;TCF=58;TCR=49;TR=105;WE=41204102;WS=41204082;set=Platypus	GT:AD:AF:DP	1/1:2,105:0.98:107
chr6	41204094	rs9394777	C	G	9503.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.20;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	41204329	rs9349186	A	T	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	41243740	rs2234246	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	41303592	rs9394782	T	C	23787.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DB;DP=959;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.09;ReadPosRankSum=1.616;SOR=0.371;set=HC	GT:AD:AF:DP	1/1:3,945:1.00:948
chr6	41303784	rs9471575	G	A	8194.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	41303805	rs9471576	G	A	9122.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	41303995	rs9471577	A	G	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr6	41304241	rs9471578	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	41318424	rs2273961	T	A	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	41318438	rs2273962	A	G	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	41470137	rs71305793	T	TG	334.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	41620938	rs12199887	A	G	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-1.350;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:249,91:0.27:340
chr6	41620975	rs2842657	A	G	4071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-2.761;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:488,249:0.34:737
chr6	41652604	rs1062966	T	C	6275.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr6	41654110	rs1076727	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	41655005	rs2073157	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	41655340	rs9462736	C	T	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	41655814	rs9471626	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	41658889	rs1015149	C	T	7909.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr6	41659304	rs1015150	C	T	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	41715239	rs2027524	T	A	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr6	41721682	rs59644697	G	GT	5394.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:76,167:0.69:243
chr6	41739173	rs35310379	C	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:163,90:0.36:253
chr6	41740483	.	CGT	CGTGTGTGTGTGT,C	603.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=34;set=Intersection	GT:AF:DP	0/1:0.39:18
chr6	41748279	rs10947986	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	41753380	rs3747753	G	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr6	41754370	rs10947987	C	T	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:100,134:0.57:234
chr6	41754573	rs140326303	C	CCTT	27029.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=1179;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.638;QD=24.40;ReadPosRankSum=-1.116;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:428,680:0.61:1108
chr6	41755708	rs41273794	C	T	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,57:0.67:85
chr6	41773576	rs2185798	G	C	12456.77	.	AC=1;AF=0.500;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	0/1:291,581:0.67:872
chr6	41773735	rs6926173	G	A	6375.77	.	AC=1;AF=0.500;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	0/1:492,347:0.41:839
chr6	41774815	rs11393933	T	TA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.25;ReadPosRankSum=-0.692;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	41885482	rs191616813	G	A	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:202,106:0.34:308
chr6	41888827	rs2274578	C	G	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:305,156:0.34:461
chr6	41898096	rs2479726	A	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr6	41898564	rs12661819	C	T	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr6	41903782	rs1051130	A	C	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.713;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:197,78:0.28:275
chr6	41905174	rs2479717	T	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr6	42016319	rs11552783	G	A	18361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DB;DP=1284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.334;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:438,817:0.65:1255
chr6	42025058	rs6917299	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr6	42025402	rs1134218	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr6	42036395	rs2492926	A	C	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	42044945	rs3800286	G	A	8339.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr6	42072989	rs9394863	G	A	5887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=956;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=0.127;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:597,342:0.36:939
chr6	42073958	rs9394865	C	T	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:258,144:0.36:402
chr6	42074106	rs9394866	A	G	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:220,155:0.41:375
chr6	42075069	rs55772414	A	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr6	42075377	rs9394868	A	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:77,40:0.34:117
chr6	42075461	rs9381137	G	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,6:0.19:31
chr6	42077870	rs9471765	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr6	42094553	rs9471775	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.146;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr6	42094614	rs9471776	A	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.676;QD=4.32;ReadPosRankSum=0.185;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:68,33:0.33:101
chr6	42094699	rs6940849	G	T	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	42110263	rs6911399	T	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	42123317	rs1132156	A	C	13642.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr6	42146298	rs1467448	G	C	3807.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:83,172:0.67:255
chr6	42153609	rs9471799	C	T	14998.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr6	42154104	rs6909313	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr6	42155594	rs34922942	C	CT	647.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr6	42155611	rs9462780	T	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr6	42155666	rs9462781	C	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr6	42155930	rs9462782	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.286;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr6	42156016	rs34804344	A	AT	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr6	42156550	rs74600252	T	A	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr6	42162388	rs3749921	A	G	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:316,158:0.33:474
chr6	42162575	rs1474867	A	G	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	42176120	rs2295278	G	T	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=0.790;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:48,35:0.42:83
chr6	42176451	rs6936290	G	A	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr6	42176544	rs34547023	C	T	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:136,197:0.59:333
chr6	42176737	.	G	GT	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.003;QD=10.45;ReadPosRankSum=-1.104;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr6	42176743	rs57369579	TG	T	475.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.836;QD=19.82;ReadPosRankSum=1.626;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr6	42176744	rs7771519	G	T	259.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=1.003;QD=10.82;ReadPosRankSum=-1.654;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr6	42176749	rs55788550	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.789;QD=21.08;ReadPosRankSum=1.587;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr6	42181960	rs1884318	A	C	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-2.685;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:105,59:0.36:164
chr6	42182183	rs1884317	C	T	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	42185564	rs9471809	A	C	14284.77	.	AC=1;AF=0.500;AN=2;DB;DP=1065;set=Intersection	GT:AD:AF:DP	0/1:371,685:0.65:1056
chr6	42185712	rs9471810	A	T	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:61,127:0.68:188
chr6	42210936	rs3830886	T	TG	2693.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:59,99:0.63:158
chr6	42210951	rs2295276	C	G	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:79,133:0.63:212
chr6	42224546	rs2295275	A	T	4433.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:136,203:0.60:339
chr6	42583625	rs9381203	G	A	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr6	42600319	rs5014584	A	G	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	42608121	.	GGTGTGTGTGTGT	G	2906	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.9785;HP=2;HapScore=2;MGOF=16;MMLQ=21;MQ=55.04;NF=0;NR=8;PP=2906;QD=20;SC=GAACCAGTAAGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=8;WE=42608143;WS=42608111;set=Platypus	GT:AD:AF:DP	1/0:7,8:0.53:15
chr6	42608122	rs373742087	GT	G	1154.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	42608124	.	GTGTGTGTGTGT	G	1154.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	42611936	.	TA	T	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=2.833;QD=0.97;ReadPosRankSum=1.671;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:61,21:0.26:82
chr6	42612312	rs7767888	C	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	42617961	rs3763234	T	G	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	42619832	.	TG	T	719.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr6	42626147	rs3830862	TACTC	T	40.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;MQ=65.19;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	42626564	rs35713624	T	TA	907.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.161;QD=6.44;ReadPosRankSum=0.661;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:61,80:0.57:141
chr6	42627258	rs59248267	TACACACACAC	TAC,T	637.77	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=43;set=Intersection	GT:AF:DP	0/1:0.81:32
chr6	42630107	rs3736745	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	42641704	rs761537	G	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	42650766	rs34240626	G	GT	763.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	42652667	rs434505	G	A	4587.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	42666061	rs434102	T	C	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr6	42666145	rs425876	C	T	25283.77	.	AC=2;AF=1.00;AN=2;DB;DP=975;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,962:1.00:962
chr6	42666164	rs390659	G	C	29008.77	.	AC=2;AF=1.00;AN=2;DB;DP=1181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,1108:1.00:1108
chr6	42666365	rs389999	G	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	42672407	rs3818087	T	C	11770.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.90;SOR=1.062;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr6	42672416	rs3818086	A	T	9994.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.06;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	42672434	rs34722725	C	T	3859.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,144:0.99:146
chr6	42689411	rs6928781	G	A	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	42689755	rs7764439	A	G	21761.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	1/1:0,826:1.00:826
chr6	42712689	rs141166981	T	C	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.566;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=0.569;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:48,29:0.38:77
chr6	42713618	rs2234026	A	G	24008.77	.	AC=2;AF=1.00;AN=2;DB;DP=931;set=Intersection	GT:AD:AF:DP	1/1:0,904:1.00:904
chr6	42853842	rs2179719	A	G	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	42910983	rs138731400	C	G	2290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=1.414;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:79,112:0.59:191
chr6	42928461	rs10948059	C	T	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-1.102;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:40,22:0.35:62
chr6	42928758	rs2296805	T	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:89,38:0.30:127
chr6	42929839	rs7760250	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr6	42931224	rs4987173	G	A	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:419,212:0.34:631
chr6	42931261	rs2296804	C	G	4929.73	.	AC=1;AF=0.500;AN=2;DB;DP=918;set=Intersection	GT:AD:AF:DP	0/1:578,298:0.34:876
chr6	42932200	rs1129187	G	T	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.167;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:111,50:0.31:161
chr6	42932200	.	GGC	TGT	909	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=25;MQ=60.0;NF=14;NR=19;PP=909;QD=29.1656931776;SC=TGAGCTACCTGGCTCCAGCCC;SbPval=0.62;Source=Platypus;TC=81;TCF=36;TCR=45;TR=33;WE=42932210;WS=42932190;set=Platypus	GT:AD:AF:DP	0/1:48,33:0.41:81
chr6	42932202	rs1129186	C	T	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.121;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:109,48:0.31:157
chr6	42932715	rs2274517	C	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:287,121:0.30:408
chr6	42934500	rs2274514	C	T	6498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=1070;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=1.744;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:677,378:0.36:1055
chr6	42934620	rs3818554	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=0.410;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:64,38:0.37:102
chr6	42935998	rs9471982	G	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:128,62:0.33:190
chr6	42936900	rs3805953	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr6	42942779	rs9986447	A	G	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr6	42946490	rs9462858	C	A	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:182,120:0.40:302
chr6	42946943	rs9462859	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr6	42989057	rs9296409	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	43014298	rs9394939	TT	CC	21119.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr6	43021976	rs34298469	CG	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.192;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr6	43023097	.	G	GA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.733;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr6	43026081	rs139942848	G	T	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr6	43110240	rs368318333	GGT	G	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.563;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.755;QD=0.71;ReadPosRankSum=1.397;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:180,26:0.13:206
chr6	43114211	rs60930750	C	CT	658.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	43154091	rs941849	C	G	21008.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	1/1:0,776:1.00:776
chr6	43182657	rs1214714	G	A	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	43250710	rs3800295	G	C	2809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=4.178;QD=11.11;ReadPosRankSum=1.552;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:165,88:0.35:253
chr6	43250725	rs113160341	GGAA	G	2788.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=3.413;QD=12.39;ReadPosRankSum=0.268;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:143,82:0.36:225
chr6	43251118	rs45515398	C	T	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:472,205:0.30:677
chr6	43251912	rs3800297	A	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:151,86:0.36:237
chr6	43252029	rs3800298	T	C	2636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=7.997;QD=6.01;ReadPosRankSum=0.601;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:282,157:0.36:439
chr6	43252107	rs11269387	G	GGAGGGGCTTCTCCAGAACCAAGGT	1320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=62.23;MQRankSum=8.265;QD=13.62;ReadPosRankSum=-1.041;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:53,44:0.45:97
chr6	43252141	rs7763131	T	C	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=61.11;MQRankSum=4.516;QD=8.28;ReadPosRankSum=0.690;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr6	43269029	rs1574430	A	C	2868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=-1.579;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:77,135:0.64:212
chr6	43269179	rs2841648	CC	AA	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;JOINED;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr6	43270097	rs2651184	T	C	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	43270151	rs2270860	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:82,34:0.29:116
chr6	43270326	rs2841646	A	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	43273604	rs2242416	A	G	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:91,132:0.59:223
chr6	43276388	rs12193537	G	C	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:318,159:0.33:477
chr6	43276390	rs2254303	G	A	7265.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:162,332:0.67:494
chr6	43299719	rs2279088	A	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr6	43306346	rs1459675	A	G	23829.77	.	AC=2;AF=1.00;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	1/1:0,909:1.00:909
chr6	43336771	rs9381238	C	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	43399837	rs700008	A	G	10916.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:1,408:1.00:409
chr6	43401105	rs9394952	G	A	4137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=0.473;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:99,199:0.67:298
chr6	43406501	rs2277122	C	T	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:478,216:0.31:694
chr6	43411659	rs79175380	T	C	3965.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:138,195:0.59:333
chr6	43412865	rs2125739	T	C	12111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=0.664;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:313,577:0.65:890
chr6	43414216	rs1214746	T	C	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	43414234	rs1214747	G	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr6	43418691	rs1214748	G	A	8027.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:263,371:0.59:634
chr6	43418733	rs1214749	G	A	7095.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:251,329:0.57:580
chr6	43469496	rs28669680	A	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr6	43469519	rs111549887	C	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	43469814	.	A	T	65	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=2;MGOF=64;MMLQ=27;MQ=54.54;NF=1;NR=3;PP=65;QD=24.9428031368;SC=ACACACACACACTCTCTCTCT;SbPval=0.32;Source=Platypus;TC=24;TCF=12;TCR=12;TR=4;WE=43469822;WS=43469811;set=Platypus	GT:AD:AF:DP	0/1:20,4:0.17:24
chr6	43469814	.	A	ACACACT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=7.471;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=1.325;QD=6.79;ReadPosRankSum=-0.534;SOR=2.283;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr6	43471853	.	C	CT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.457;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr6	43494319	rs1150800	A	G	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	43496662	rs1106841	A	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr6	43501580	rs11404474	C	CA	286.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	43521263	.	TAC	T	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=1.023;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:197,34:0.15:231
chr6	43533305	rs11362688	TA	T	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=2.684;QD=4.50;ReadPosRankSum=-1.265;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:36,32:0.47:68
chr6	43565568	rs2307456	G	T	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:172,96:0.36:268
chr6	43568783	rs370185041	A	G	3052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.234;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:386,190:0.33:576
chr6	43597416	rs116563579	G	A	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=-0.638;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:16,37:0.70:53
chr6	43608386	rs7106	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr6	43738350	rs2010963	C	G	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	43745095	rs2146323	C	A	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	43747371	rs3025007	C	T	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr6	43747450	rs3025009	G	A	12640.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr6	43747577	rs3025010	T	C	12184.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr6	43748643	rs3025052	T	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	43752536	rs3025039	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	43970503	rs72369323	CGCG	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.343;QD=0.88;ReadPosRankSum=1.888;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:128,13:0.09:141
chr6	44081718	rs6883	G	A	8084.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr6	44081987	rs4711767	T	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	44102572	rs3841315	C	CT	22352.73	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr6	44108937	rs4628095	G	A	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	44115169	rs4714759	G	A	14885.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,580:1.00:580
chr6	44117607	rs4714761	C	T	10420.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr6	44117664	rs4714762	C	T	18334.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,718:1.00:718
chr6	44117727	rs4711768	A	G	16181.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.959;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=1.419;SOR=0.266;set=HC	GT:AD:AF:DP	1/1:1,629:1.00:630
chr6	44119532	rs3734696	G	A	7887.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr6	44119676	rs3734697	A	G	11409.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr6	44121270	rs1041523	C	T	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	44122416	rs10537719	TCTC	T	2994.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=44.04;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	44151765	rs13209117	G	A	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	44185254	rs3734701	T	C	7328.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr6	44185522	rs57595790	TC	GA	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	44216544	.	G	GT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DP=451;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=0.20;ReadPosRankSum=2.119;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:342,64:0.16:406
chr6	44217654	rs9367190	C	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	44217667	rs9381303	C	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	44218120	rs13296	A	G	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	44219710	rs2070695	A	C	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr6	44220076	rs504697	T	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	44222047	rs3187	G	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.28;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	44222109	rs3188	G	A	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.30;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	44222161	rs35131506	C	CTG	1331.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	44238556	.	A	T	1717.77	.	AC=2;AF=1.00;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	44240193	rs571770	C	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	44240559	rs524533	C	T	13492.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:2,515:1.00:517
chr6	44243559	rs3734710	A	G	8849.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr6	44245930	rs325018	C	T	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr6	44246049	rs325017	A	G	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	44247951	rs484757	T	G	13192.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr6	44250165	rs516582	A	G	9650.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr6	44253617	rs324142	C	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	44253749	rs324143	A	G	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	44255459	rs324146	G	A	7738.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr6	44268135	rs325009	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	44268371	rs325008	T	C	8931.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr6	44269023	rs325007	T	C	24301.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.614;ClippingRankSum=0.000;DB;DP=939;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.02;ReadPosRankSum=-0.289;SOR=0.338;set=HC	GT:AD:AF:DP	1/1:1,933:1.00:934
chr6	44269193	rs498512	C	T	9270.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr6	44269640	rs325006	G	A	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	44269680	rs325005	C	G	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	44270768	rs325002	G	T	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	44274797	rs7740535	T	C	13376.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,520:1.00:520
chr6	44275011	rs324136	T	C	22144.77	.	AC=2;AF=1.00;AN=2;DB;DP=869;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,861:1.00:861
chr6	44279111	rs9688508	A	G	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	44279302	rs139386463	G	GA	2462.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	44279309	rs41282672	C	T	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	44320548	rs4714783	T	A	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr6	44355423	rs2297333	C	T	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	44355682	rs34753552	G	A	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	44355699	rs2297331	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	44357884	rs6908640	T	G	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	44360680	rs6942323	A	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	44403524	rs201451466	G	GT	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=5.219;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.464;QD=8.62;ReadPosRankSum=0.576;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr6	45390486	.	AGGCGGCGGCGGCGGCTGC	A	5522.73	.	AC=2;AF=1.00;AN=2;DP=445;set=Intersection	GT:AD:AF:DP	1/1:16,233:0.94:249
chr6	45480190	rs11498194	G	A	7799.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr6	45870999	rs35735653	CAG	C	5220.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	45922849	rs3734206	C	T	9067.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr6	46107752	rs7451713	C	G	8734.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr6	46129345	rs2235881	G	A	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	46135489	rs6926570	T	C	5789.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr6	46135984	rs3806995	G	T	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	46293328	rs2277121	G	A	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	46609905	rs2277119	C	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	46636556	.	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.606;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr6	46726441	rs9395212	G	C	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	46826508	rs613870	G	A	11700.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.879;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=0.000;QD=25.60;ReadPosRankSum=0.954;SOR=0.245;set=HC	GT:AD:AF:DP	1/1:1,456:1.00:457
chr6	46826715	rs572248	T	A	17784.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr6	46826844	rs571247	T	C	11128.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr6	46826910	rs611779	G	A	8646.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr6	46827073	rs547499	A	G	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr6	46827126	rs610856	C	T	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr6	46828670	rs540727	A	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	46831060	rs476374	C	T	8427.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr6	46832741	rs529201	T	C	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	46832813	rs614826	G	A	10213.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr6	46834685	rs586024	G	A	6486.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr6	46834906	rs5875987	TG	T	1596.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	46836995	rs515866	T	C	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	46838659	.	T	TTG	126	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=0;NR=4;PP=126;QD=48.9775021096;SC=ACACAACTCTTTGTTAAAACT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=4;WE=46838667;WS=46838649;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr6	46856100	rs678312	G	A	5504.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	46856263	rs677439	G	A	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	46867717	rs220702	C	T	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	47202669	rs201521859	G	GA	143.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	47277329	rs45499096	C	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	47445927	rs9349406	T	A	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:7,117:0.94:124
chr6	47512590	rs6916578	C	T	78.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	47522357	rs9473132	G	A	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	47547070	rs34735056	T	TA,TAA	930.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.428;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.352;QD=20.23;ReadPosRankSum=-1.202;SOR=0.840;set=HC	GT:AD:AF:DP	1/2:3,12,31:0.26,0.67:46
chr6	47549883	rs2275446	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	47563692	rs2039503	C	T	11990.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr6	47577064	rs9395287	G	A	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	47624239	rs1485784	A	G	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	47624299	rs9369730	A	G	9450.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:2,378:0.99:380
chr6	47626685	rs6935668	C	T	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	47626833	rs12201065	C	A	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	47641307	rs1411049	G	C	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	47645772	rs9369734	G	T	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	47646842	rs6907125	A	G	5602.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.24;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	47649222	rs8180544	T	G	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr6	47649573	rs10807371	CA	TG	8576.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	47649694	rs9381594	A	G	4700.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr6	47653536	rs9381596	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	47653812	rs60074575	TA	T	1206.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=27.43;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	47653851	rs9296570	T	C	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	47654591	rs10948376	G	T	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	47654662	rs10485315	A	G	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	47654742	rs9296573	A	T	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	47654817	rs1556133	C	A	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	47654831	rs1556132	A	G	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	47654864	rs1556131	T	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	47661387	rs9395311	A	G	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	47676150	rs9369737	C	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	47678455	rs11356177	CT	C	7149.73	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=22.70;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr6	47678678	rs944056	C	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	47681494	rs6916562	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	47682604	rs9369738	A	C	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	47684591	rs1360157	G	A	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	47686101	rs6914013	T	C	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	47759446	rs9463355	C	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	47762938	rs28625759	C	T	6859.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,261:1.00:262
chr6	47847179	rs3799276	A	G	12371.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr6	47847401	rs2068006	A	G	7629.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr6	47847683	rs9367307	A	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	49403282	rs8589	T	C	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=0.388;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:76,41:0.35:117
chr6	49409487	rs9473555	G	C	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=0.779;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:75,40:0.35:115
chr6	49409737	rs9473557	T	C	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.790;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:107,47:0.31:154
chr6	49411477	rs7744595	G	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.978;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr6	49411619	rs6458690	A	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,45:0.45:100
chr6	49412433	rs1141321	C	T	1361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-0.607;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:204,91:0.31:295
chr6	49415351	rs56408395	T	TA	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.391;MLEAC=1;MLEAF=0.500;MQ=60.71;MQRankSum=2.674;QD=4.03;ReadPosRankSum=2.815;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr6	49421241	rs7769646	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr6	49425521	rs2229384	C	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.357;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:119,39:0.25:158
chr6	49437853	rs11333073	AT	A	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=3.465;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:31,23:0.43:54
chr6	49439805	rs4267943	G	A	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:525,244:0.32:769
chr6	49440363	rs4348317	C	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr6	49456545	rs2501965	G	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr6	49459978	rs2501968	A	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:12,52:0.81:64
chr6	49479750	rs13193063	T	C	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=2.019;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:17,41:0.71:58
chr6	49479775	rs1480615	A	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	49489397	rs9369905	C	A	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	49494241	rs9367359	A	G	23295.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.907;ClippingRankSum=0.000;DB;DP=919;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;MQRankSum=0.066;QD=25.57;ReadPosRankSum=0.944;SOR=0.267;set=HC	GT:AD:AF:DP	1/1:1,910:1.00:911
chr6	49518914	rs6919674	C	G	13565.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr6	49574641	rs150091685	C	T	4509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=1.340;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:172,222:0.56:394
chr6	49660418	rs12624	A	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:96,49:0.34:145
chr6	49668536	rs182644252	T	A	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.068;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr6	49701439	rs1864312	C	A	10360.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr6	49701523	rs495335	A	G	14349.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr6	49755030	rs28372930	G	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr6	49815873	rs373553362	AT	A	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.765;QD=3.14;ReadPosRankSum=-0.465;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:128,72:0.36:200
chr6	49976713	.	A	G	141.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	50681817	rs35125047	CT	C	1780.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.440;QD=4.30;ReadPosRankSum=1.398;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:189,225:0.54:414
chr6	50789792	rs36011604	AT	A	1897.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=2.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=1.932;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:251,157:0.38:408
chr6	50791584	rs71687472	CACAA	C	3883.73	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:247,167:0.40:414
chr6	50805942	rs2817404	T	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	50811115	rs2857513	A	T	2129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=2.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.676;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:171,118:0.41:289
chr6	51483961	rs9381994	T	C	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:245,122:0.33:367
chr6	51484348	rs9395699	G	A	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:176,105:0.37:281
chr6	51491884	rs4715227	T	C	2514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=1.375;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:254,151:0.37:405
chr6	51492046	rs9474033	T	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr6	51512707	rs2580009	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr6	51586771	rs9349593	G	A	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:322,202:0.39:524
chr6	51613177	rs765525	C	T	3511.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:269,186:0.41:455
chr6	51618170	rs1326605	T	G	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.619;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:143,51:0.26:194
chr6	51619808	rs9370049	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=2.067;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr6	51640751	rs3920621	C	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr6	51656236	rs7765455	G	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr6	51695570	rs1571083	T	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr6	51695647	rs1571084	A	T	3238.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:79,157:0.67:236
chr6	51701058	rs9474104	C	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr6	51720838	rs9349603	T	C	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:186,131:0.41:317
chr6	51720872	rs7452724	A	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr6	51732598	rs9382043	G	A	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:149,80:0.35:229
chr6	51732628	rs9382044	G	A	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:206,110:0.35:316
chr6	51732807	rs12210295	C	T	6443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-0.134;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:201,306:0.60:507
chr6	51735261	rs982874	G	T	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:125,80:0.39:205
chr6	51750563	rs4711985	A	T	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.271;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr6	51776535	rs12196767	T	C	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.535;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-0.399;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:66,96:0.59:162
chr6	51875250	rs2435322	A	C	6175.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr6	51890823	rs9296669	G	A	13263.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr6	51891011	rs2499480	T	C	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	51910735	rs58370838	A	AT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.238;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr6	51913240	rs10948667	G	A	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr6	51914898	rs9395759	T	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	51914956	rs9370096	G	A	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	51924774	rs1896976	A	G	9772.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr6	51929931	.	TTATATA	T	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.84;ReadPosRankSum=-0.732;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr6	51929962	rs1896985	T	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.09;ReadPosRankSum=2.100;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	51929964	rs186668459	T	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.09;ReadPosRankSum=2.515;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr6	51929966	rs4715274	T	G	277.25	.	AC=1;AF=0.500;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.20;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr6	51930886	rs5876252	T	TA	1229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.275;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.09;MQRankSum=2.136;QD=10.79;ReadPosRankSum=1.435;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:33,81:0.71:114
chr6	51935747	rs17576809	C	T	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	51936846	rs3936986	T	C	8957.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr6	51944847	rs1892274	T	C	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	51949862	rs9370097	A	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	52109005	rs2294834	T	G	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=0.567;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:38,22:0.37:60
chr6	52109408	rs3215541	GT	G	125.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr6	52129484	rs2230240	C	T	4578.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:79,206:0.72:285
chr6	52131254	rs10807441	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	52137313	rs12207056	C	T	6284.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:133,298:0.69:431
chr6	52141670	rs3765446	A	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr6	52142582	rs13191372	G	A	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr6	52144081	rs2073036	T	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	52144221	rs2307331	C	T	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:115,64:0.36:179
chr6	52146771	.	C	A	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=-1.712;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chr6	52147692	rs2307322	T	A	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,63:0.63:100
chr6	52269151	rs655113	T	C	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	52285394	rs12206743	G	C	14067.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,542:1.00:542
chr6	52344751	.	TAG	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=-0.876;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr6	52355206	rs2273120	T	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	52541811	rs13211066	G	A	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.815;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:83,37:0.31:120
chr6	52546789	rs2281484	C	T	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.456;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=10.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=0.298;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr6	52617731	rs2180314	C	G	8450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.251;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=0.519;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:274,410:0.60:684
chr6	52622814	rs2254050	C	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,59:0.66:90
chr6	52657552	rs4715326	C	T	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:46,94:0.67:140
chr6	52658962	rs1051775	T	C	3459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.472;QD=6.08;ReadPosRankSum=-0.489;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:370,199:0.35:569
chr6	52661267	rs143488570	ATATATATATATATATATATATGTGTGTGTGTGTGTG	A	257.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=58.67;MQRankSum=-0.000;QD=32.23;ReadPosRankSum=1.534;SOR=2.526;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr6	52662263	rs2397106	C	T	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	52697576	rs4715344	C	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:50,83:0.62:133
chr6	52697601	rs55815585	T	G	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:114,60:0.34:174
chr6	52697825	rs4715345	A	C	15188.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.28;QD=42.79;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr6	52697834	rs4715346	C	A	14271.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;QD=45.02;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr6	52701143	rs2397118	C	T	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	52702324	rs4715350	T	C	14500.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,569:1.00:569
chr6	52843131	rs367836	G	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr6	52843477	rs375887	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	52847551	rs316133	G	C	4545.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:136,213:0.61:349
chr6	52849146	rs316128	G	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr6	52849481	rs11444456	C	CT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.880;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr6	52858774	rs45571441	C	G	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:173,96:0.36:269
chr6	52858838	rs45504201	G	A	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:356,185:0.34:541
chr6	52878637	rs2297211	T	C	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:137,64:0.32:201
chr6	52902852	rs742343	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=2.048;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr6	52938468	rs5876299	AT	A	613.74	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:5,43:0.90:48
chr6	52943841	rs35757290	TA	T	1229.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr6	52958479	rs2816350	A	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	52962473	rs9474385	G	A	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:84,45:0.35:129
chr6	52962715	rs2744455	C	T	716.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.56;ReadPosRankSum=-1.303;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr6	52962734	.	A	G	402.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=44.70;ReadPosRankSum=0.967;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr6	52962736	rs1127838	A	G	304.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=38.12;ReadPosRankSum=1.534;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr6	52962738	.	A	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.19;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	52963071	rs2876	A	G	3343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=0.234;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:99,165:0.62:264
chr6	52998788	rs2816346	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr6	52998834	rs2816345	C	T	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	52998856	rs2518573	T	G	3673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=3.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-0.305;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:87,174:0.67:261
chr6	53010182	rs9367511	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.171;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.240;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr6	53134104	rs3830806	C	CACAG	10465.73	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	53134164	rs70980834	C	CCTTTT	3568.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	53138203	rs35189966	TA	T	643.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr6	53138260	rs9463895	G	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	53140161	rs2294862	G	A	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	53140928	rs2294864	T	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.12;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	53152642	rs6458913	G	A	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	53152758	rs6907982	A	G	9630.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr6	53152845	rs3817960	T	G	5390.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	53160383	rs3736732	G	T	11280.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.939;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.79;ReadPosRankSum=1.193;SOR=0.323;set=HC	GT:AD:AF:DP	1/1:1,454:1.00:455
chr6	53365019	rs661346	G	C	17004.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr6	53516876	rs6928338	T	G	24736.77	.	AC=2;AF=1.00;AN=2;DB;DP=981;set=Intersection	GT:AD:AF:DP	1/1:0,954:1.00:954
chr6	53517228	rs41273882	A	C	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:81,103:0.56:184
chr6	53519062	rs10948758	A	G	9793.77	.	AC=1;AF=0.500;AN=2;DB;DP=1134;set=Intersection	GT:AD:AF:DP	0/1:617,504:0.45:1121
chr6	53519605	rs3799260	C	T	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:174,151:0.46:325
chr6	53519857	rs12210809	G	A	5392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.541;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:293,269:0.48:562
chr6	53520088	rs2038939	T	C	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	53520124	rs2038940	A	G	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.897;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr6	53707098	rs4286781	C	T	8326.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr6	53762293	rs71775183	GA	G	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=0.199;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr6	53764818	.	GTT	G	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=0.570;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr6	53764831	.	T	G	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.415;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr6	53784275	.	T	TTAA	1999.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=2.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=1.016;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:74,69:0.48:143
chr6	53847528	rs9370250	G	A	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	53847672	rs9370251	A	G	4756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-3.206;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:276,254:0.48:530
chr6	54002231	rs2754779	A	C	29185.77	.	AC=2;AF=1.00;AN=2;DB;DP=1089;set=Intersection	GT:AD:AF:DP	1/1:0,1082:1.00:1082
chr6	54003184	rs2754780	A	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	54013765	rs2145755	A	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	54054686	rs6934690	T	A	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	54067088	rs67016420	AT	A	4844.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.61;SOR=1.431;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	54121968	rs9367556	G	A	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	54130643	rs12198031	T	A	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	54130697	rs12198070	T	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	54130829	rs67803711	CT	C	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.530;QD=11.13;ReadPosRankSum=0.411;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr6	54172879	rs1340660	T	G	5808.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:257,289:0.53:546
chr6	54173413	rs2297980	A	G	4518.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:207,229:0.53:436
chr6	54186024	rs2297986	T	C	6621.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	54186147	rs1058768	T	C	19185.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:0,751:1.00:751
chr6	54191970	rs1848440	T	A	12370.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,482:1.00:482
chr6	54734941	rs7765721	C	A	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	54735122	rs1472679	A	G	26440.77	.	AC=2;AF=1.00;AN=2;DB;DP=1040;set=Intersection	GT:AD:AF:DP	1/1:0,1024:1.00:1024
chr6	55113411	rs3122169	C	A	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr6	55142337	rs2653349	A	G	6208.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr6	55215079	rs1032767	G	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	55216005	rs870806	G	A	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:178,110:0.38:288
chr6	55223962	rs148113230	G	GTCTA,GTCTATCTATCTATCTATCTA	869.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;set=Intersection	GT:AF:DP	1/2:0.59,0.41:22
chr6	55264362	rs6936510	T	C	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	55266625	rs9370418	T	C	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	55266722	rs12529201	C	T	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr6	55266796	rs10948913	C	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr6	55381262	rs6459082	G	A	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr6	55406399	rs9367638	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	55406670	rs12196868	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr6	55428650	rs12212353	T	C	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:60,66:0.52:126
chr6	55428658	rs4398737	A	C	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:65,68:0.51:133
chr6	55620251	rs3756990	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr6	55929347	rs2235735	T	C	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	55966418	rs4379279	A	G	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	55988837	rs66492291	CT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=1.610;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr6	56006843	rs2076473	T	C	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	56044578	rs2038149	T	C	21456.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	1/1:0,817:1.00:817
chr6	56045043	rs2038150	C	A	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	56357668	rs376190394	CA	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.052;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr6	56365814	rs4283892	A	G	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr6	56374754	rs9296849	C	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	56381912	rs4715626	G	A	8436.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	56394173	rs9357922	T	C	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	56395051	rs6939305	C	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	56417282	rs4715630	C	T	19882.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:1,762:1.00:763
chr6	56417545	rs4715631	T	C	28069.77	.	AC=2;AF=1.00;AN=2;DB;DP=1092;set=Intersection	GT:AD:AF:DP	1/1:0,1079:1.00:1079
chr6	56466982	.	G	GA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.305;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr6	56469319	rs45582036	G	T	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.539;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:155,85:0.35:240
chr6	56485023	rs35497571	T	C	3038.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:112,147:0.57:259
chr6	56507135	rs1024195	T	C	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	56818706	rs986245	T	C	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	56873069	rs6925819	T	C	17682.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr6	56918647	rs61740373	T	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr6	57244672	rs5011404	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr6	57244780	rs5011403	G	A	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=2.660;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:98,72:0.42:170
chr6	57244830	rs5011402	T	A	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-0.535;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:52,34:0.40:86
chr6	57244893	rs5011401	T	C	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr6	57246708	rs6913779	G	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr6	57246773	rs113849959	T	TAGG	2051.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.884;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:139,55:0.28:194
chr6	57246785	rs62415470	A	C	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:256,109:0.30:365
chr6	57246815	rs6936571	T	C	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:431,198:0.31:629
chr6	57246884	rs6913546	A	G	5674.77	.	AC=1;AF=0.500;AN=2;DB;DP=1037;set=Intersection	GT:AD:AF:DP	0/1:686,345:0.33:1031
chr6	57246969	rs4256440	G	A	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:287,131:0.31:418
chr6	57246982	rs4585567	G	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:180,92:0.34:272
chr6	57247022	rs4382263	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:89,38:0.30:127
chr6	57254789	rs2397264	A	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:138,74:0.35:212
chr6	57254811	rs941685	A	G	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr6	57254839	rs2397265	T	C	3582.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:358,205:0.36:563
chr6	57254927	rs2397266	A	G	7369.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:542,260:0.32:802
chr6	57254950	rs5876554	A	AT	5989.73	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:397,173:0.30:570
chr6	57254955	rs2894842	G	A	5636.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:380,160:0.30:540
chr6	57254986	rs2397267	G	A	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:212,86:0.29:298
chr6	57255001	rs2894843	C	A	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:154,60:0.28:214
chr6	57255015	rs2894844	G	C	1260.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:99,36:0.27:135
chr6	57255016	rs5876555	A	AC	1173.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:94,36:0.28:130
chr6	57255032	rs7769711	C	G	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:66,25:0.27:91
chr6	57372104	rs2024986	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr6	57372116	rs9382768	T	C	1186.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.67;ReadPosRankSum=1.319;SOR=1.662;set=HC	GT:AD:AF:DP	0/1:5,35:0.88:40
chr6	57372116	.	TGTAATGTGTC	CGTAATGTGTC,CGTAATGTGTG	815	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=11;MMLQ=23;MQ=60.0;NF=29,14;NR=4,2;PP=815,669;QD=25.7506428045;SC=GCTTTGATCATGTAATGTGTC;SbPval=0.63;Source=Platypus;TC=38;TCF=33;TCR=5;TR=33,16;WE=57372134;WS=57372099;set=Platypus	GT:AF:DP	0/1:0.87:38
chr6	57372126	rs9396314	C	G	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.125;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:30,28:0.48:58
chr6	57372199	rs9382769	T	C	7997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=-0.632;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:128,361:0.74:489
chr6	57372361	rs9382770	C	A	12177.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:139,460:0.77:599
chr6	57372365	rs9396315	A	G	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.936;QD=1.53;ReadPosRankSum=-0.710;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:475,104:0.18:579
chr6	57372374	rs68090917	CT	C	5412.73	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:312,197:0.39:509
chr6	57372436	rs9382771	G	C	4188.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.20;ReadPosRankSum=-0.345;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:31,123:0.80:154
chr6	57372436	.	GC	CC,CT	840	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=45;MMLQ=26;MQ=60.0;NF=24,13;NR=69,38;PP=702,840;QD=7.92227110266;SC=TGGTGAAACCGCTTCAATTAC;SbPval=0.54;Source=Platypus;TC=118;TCF=31;TCR=87;TR=93,51;WE=57372445;WS=57372425;set=Platypus	GT:AF:DP	0/1:0.79:118
chr6	57372437	rs79221898	C	T	1605.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=1.161;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:80,74:0.48:154
chr6	57372456	rs35141035	AT	A	483.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=1.884;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:34,33:0.49:67
chr6	57372480	rs79601039	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr6	57372502	rs9349872	G	A	651.28	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.18;ReadPosRankSum=-0.873;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr6	57372502	.	GTACCATGTACTT	ATACCATGGACTC,ATACCATGTACTT	230	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.35;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=65;MMLQ=27;MQ=60.0;NF=1,2;NR=5,11;PP=230,8;QD=48.911312477;SC=GAAGTTCTTAGTACCATGTAC;SbPval=0.6;Source=Platypus;TC=14;TCF=2;TCR=12;TR=6,13;WE=57372522;WS=57372492;set=Platypus	GT:AF:DP	0/1:0.43:14
chr6	57372510	rs77697887	T	G	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.48;ReadPosRankSum=-1.376;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr6	57372514	rs77868044	T	C	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.23;ReadPosRankSum=-1.026;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	57393112	rs11964288	T	C	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-1.118;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:61,28:0.31:89
chr6	57393125	rs927192	A	G	2190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-1.667;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:54,83:0.61:137
chr6	57393160	rs76686926	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-2.527;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:139,30:0.18:169
chr6	57393199	rs2397502	C	A	2182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=-0.102;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:74,63:0.46:137
chr6	57393216	rs2397503	G	T	3008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-0.300;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:41,76:0.65:117
chr6	57393222	rs111989160	A	G	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=0.022;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:92,21:0.19:113
chr6	57393228	rs112156516	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.253;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:85,19:0.18:104
chr6	57393278	rs75909609	T	C	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr6	57398028	rs67286646	TG	T	436.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr6	57398047	rs76081480	A	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-2.411;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr6	57398058	rs7771283	C	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr6	57398081	rs7753294	T	G	3290.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:34,81:0.70:115
chr6	57398117	rs139574925	T	TA	4095.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:177,109:0.38:286
chr6	57398118	rs147643173	G	T	4095.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:181,112:0.38:293
chr6	57398154	rs80081867	T	C	17117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=-0.916;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:259,408:0.61:667
chr6	57398157	rs9476080	A	G	18453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.563;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.25;ReadPosRankSum=-2.127;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:263,440:0.63:703
chr6	57398163	rs9476081	A	G	18986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.638;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.95;ReadPosRankSum=-2.831;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:276,485:0.64:761
chr6	57398186	rs147954160	G	GA	2506.73	.	AC=1;AF=0.500;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	0/1:687,196:0.22:883
chr6	57398201	rs62398997	T	C	21894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=873;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.736;QD=25.14;ReadPosRankSum=1.091;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:305,566:0.65:871
chr6	57398226	rs77436138	T	G	16574.77	.	AC=1;AF=0.500;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	0/1:284,525:0.65:809
chr6	57398264	rs62398998	A	G	11147.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:203,426:0.68:629
chr6	57398335	rs4715745	A	T	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr6	57398385	rs11455120	A	AT	229.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr6	57398395	rs78658694	A	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr6	57415121	rs7741368	G	A	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:138,55:0.28:193
chr6	57415141	rs11346545	TA	T	1749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.809;QD=6.65;ReadPosRankSum=2.562;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:201,62:0.24:263
chr6	57415161	rs493737	T	G	8608.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:97,304:0.76:401
chr6	57415173	rs496135	G	A	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.725;QD=3.52;ReadPosRankSum=-0.087;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:358,121:0.25:479
chr6	57415223	rs7741129	A	T	5885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.763;QD=7.68;ReadPosRankSum=2.391;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:579,187:0.24:766
chr6	57415231	rs7761558	T	C	5812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=742;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.741;QD=7.86;ReadPosRankSum=2.017;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:556,184:0.25:740
chr6	57415309	rs7741689	G	C	4872.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:99,222:0.69:321
chr6	57415349	rs11412269	G	GA	1896.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:24,71:0.75:95
chr6	57415403	rs11412270	T	TA	255.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr6	57415420	rs9349880	T	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=1.267;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr6	57415425	rs7741460	A	T	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.92;ReadPosRankSum=1.437;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	57433425	rs2397541	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr6	57433455	rs2151625	C	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr6	57433501	rs201029322	AAAAAAAG	A	2328.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr6	57433525	rs518931	T	G	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-0.572;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:105,30:0.22:135
chr6	57433544	rs562762	G	A	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=-3.396;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:97,32:0.25:129
chr6	57433616	rs518037	T	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr6	57433669	rs4464799	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	57457703	rs111977760	A	AG	313.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.102;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.87;MQRankSum=3.256;QD=17.43;ReadPosRankSum=0.216;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	57457704	rs5008381	A	T	322.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.351;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.87;MQRankSum=3.256;QD=17.93;ReadPosRankSum=0.435;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	57457704	.	AT	GT	279	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=40;MMLQ=27;MQ=61.84;NF=1,7;NR=4,4;PP=250,279;QD=62.7691520942;SC=CTGAGCTTGAATTCTGTTAGT;SbPval=0.95;Source=Platypus;TC=11;TCF=5;TCR=6;TR=5,11;WE=57457712;WS=57457694;set=Platypus	GT:AD:AF:DP	0/1:8,11:0.58:19
chr6	57457704	.	AT	ATT	279	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=40;MMLQ=27;MQ=61.84;NF=1,7;NR=4,4;PP=250,279;QD=62.7691520942;SC=CTGAGCTTGAATTCTGTTAGT;SbPval=0.95;Source=Platypus;TC=11;TCF=5;TCR=6;TR=5,11;WE=57457712;WS=57457694;set=Platypus	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	57457737	rs9476161	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.91;MQRankSum=1.821;QD=3.76;ReadPosRankSum=0.177;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr6	57457744	rs4110758	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.59;MQRankSum=0.640;QD=4.65;ReadPosRankSum=-0.023;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr6	57457779	rs4110759	G	C	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:32,67:0.68:99
chr6	57457843	rs4110760	T	G	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:91,51:0.36:142
chr6	57457947	rs2397945	A	C	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.335;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:92,35:0.28:127
chr6	57457960	rs2093718	A	G	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-0.572;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:80,41:0.34:121
chr6	57457973	rs74595165	C	T	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=1.372;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:76,30:0.28:106
chr6	57457974	rs4598061	T	G	1929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=0.021;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:38,63:0.62:101
chr6	57457995	rs4501418	G	C	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.93;ReadPosRankSum=-0.656;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:22,41:0.65:63
chr6	57458001	rs78499845	A	G	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-1.619;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr6	57458006	rs4120410	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.760;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr6	57458044	rs4351265	A	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr6	57467084	rs9885913	A	G	2316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=-1.217;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:207,71:0.26:278
chr6	57467093	rs9885916	A	G	2661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.118;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:262,84:0.24:346
chr6	57467100	rs4535533	G	C	7770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.00;ReadPosRankSum=1.141;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:138,271:0.66:409
chr6	57467107	rs9885751	C	T	2986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.597;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:351,108:0.24:459
chr6	57467175	rs4406234	A	G	7222.77	.	AC=1;AF=0.500;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	0/1:592,398:0.40:990
chr6	57467279	rs6459263	T	C	5863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.811;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:414,173:0.29:587
chr6	57467282	rs6459264	T	C	5827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=0.565;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:393,167:0.30:560
chr6	57467303	rs1022846	A	G	6044.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:86,271:0.76:357
chr6	57467317	rs4637646	G	T	4730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-1.013;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:150,130:0.46:280
chr6	57467323	rs4424069	G	C	4447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=2.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=-1.176;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:133,116:0.47:249
chr6	57472212	rs9296899	T	A	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr6	57472255	rs9296900	C	T	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:53,119:0.69:172
chr6	57472299	rs9396358	A	G	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:281,203:0.42:484
chr6	57472315	rs9296901	AG	GA	13919.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;JOINED;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:156,427:0.73:583
chr6	57472344	rs111230027	A	AT	3515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=826;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.576;QD=4.35;ReadPosRankSum=3.034;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:576,232:0.29:808
chr6	57472476	rs9382819	T	C	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:227,184:0.45:411
chr6	57472488	rs9382820	C	T	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:193,145:0.43:338
chr6	57472495	rs62400219	C	G	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=1.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.425;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:220,82:0.27:302
chr6	57472533	rs9367767	T	C	2867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.20;ReadPosRankSum=-0.085;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:49,93:0.65:142
chr6	57472534	rs74369127	T	C	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.178;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:99,39:0.28:138
chr6	57498894	rs3846934	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:10,50:0.83:60
chr6	57498944	rs3846935	G	C	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:19,89:0.82:108
chr6	57499042	rs5876654	A	AT	965.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:69,55:0.44:124
chr6	57499171	rs3846936	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	57499188	rs2151627	C	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	57499196	rs11423601	C	CA	63.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr6	57512340	rs4364484	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	57512352	rs5001077	A	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.894;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr6	57512439	rs4294006	T	C	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:110,98:0.47:208
chr6	57512476	rs4307164	G	A	7825.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:156,350:0.69:506
chr6	57512510	rs4294007	T	G	11485.77	.	AC=1;AF=0.500;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	0/1:236,538:0.70:774
chr6	57512529	rs5001076	C	A	3603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=963;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-1.023;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:692,254:0.27:946
chr6	57512565	rs4294008	T	C	18531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=1299;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=0.105;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:393,882:0.69:1275
chr6	57512678	rs4398719	G	A	10001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=659;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=-0.145;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:185,464:0.71:649
chr6	57512711	rs5001484	G	A,C	4197.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.429;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=-1.001;SOR=0.600;set=HC	GT:AD:AF:DP	1/2:101,171,82:0.48,0.23:354
chr6	57512718	rs5001483	T	A	2081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.055;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:232,67:0.22:299
chr6	57512775	rs7773110	T	G	1944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-0.807;QD=29.03;ReadPosRankSum=0.548;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:17,50:0.75:67
chr6	57512779	rs76296076	G	T	1921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.930;QD=28.26;ReadPosRankSum=1.423;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:21,47:0.69:68
chr6	57512787	.	T	TCACCAAGGC	1422.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.578;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-1.011;QD=29.04;ReadPosRankSum=0.983;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:17,32:0.65:49
chr6	57512788	.	T	TTA	1255.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.597;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-1.170;QD=30.63;ReadPosRankSum=0.550;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr6	57512792	rs372064495	T	C	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.705;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-1.283;QD=21.70;ReadPosRankSum=0.546;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr6	62390916	rs1204114	T	C	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	62407067	rs1555167	G	T	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,255:1.00:256
chr6	62523887	rs35068148	T	TA	6915.73	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr6	62526443	rs1005815	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	62757651	rs76870094	C	A	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	62757987	rs9346001	C	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	62887031	rs9346218	C	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	62887099	rs6921170	C	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	63921361	rs4710420	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	64289938	rs56188808	AT	A	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=3.479;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.020;QD=2.86;ReadPosRankSum=-0.421;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:103,74:0.42:177
chr6	64419024	.	CT	C	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.373;QD=3.33;ReadPosRankSum=0.764;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr6	65016977	rs35395170	TGA	T	1088.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.22;ReadPosRankSum=-0.462;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:3,37:0.93:40
chr6	65098768	rs587278	A	G	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	65301504	rs624851	A	G	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr6	65302915	rs11331907	GA	G	262.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	65525121	rs1390272	C	T	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	65596759	rs7743515	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	65611952	rs59518422	T	TATTA	975.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	65622463	rs9294631	A	G	8791.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr6	65622662	rs9445437	G	C	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	65767633	rs142590049	G	GA	855.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.11;ReadPosRankSum=-0.052;SOR=0.680;set=HC	GT:AD:AF:DP	1/1:5,45:0.90:50
chr6	65767634	rs45628235	G	A	1760.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.61;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	66005740	rs35045551	G	GA	1659.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.573;QD=16.11;ReadPosRankSum=-1.395;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:13,90:0.87:103
chr6	66005888	rs9342464	C	T	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,262:1.00:263
chr6	66005970	rs9345601	G	A	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	66045077	rs1502965	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	66045118	rs1502964	T	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	66112409	rs974110	A	G	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	66115281	rs34154043	G	GAAA	3772.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.30;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:1,109:0.99:110
chr6	66204945	rs12193967	G	A	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr6	68599166	rs9342670	A	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.93;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	68599169	rs9342671	A	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	69666195	rs28734080	G	A	503.41	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr6	69666684	rs1932618	A	G	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	69666747	rs3215965	GA	G	549.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	69724069	rs1336655	G	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	69728522	rs2785573	C	T	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	69759148	rs618372	A	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	69785765	rs3757050	C	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	69786046	rs35445308	G	GA	652.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	69943418	rs3215840	A	AG	4223.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	70386320	rs3214021	C	T	6356.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr6	70407465	rs12648	A	T	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	70423739	rs2305837	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	70447993	rs45559535	G	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	70448033	rs12661224	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	70451817	.	T	G	421.77	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	70490511	rs9346353	A	G	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	70490528	rs9346354	A	G	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	70500451	rs2305838	C	A	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=2.026;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	70500463	rs2305839	T	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.00;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	70745696	rs2208089	A	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	70778378	rs2224513	GC	CT	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	70812123	rs7772672	A	G	6318.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	70852607	rs3831024	C	CT	1444.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:4,67:0.94:71
chr6	70852841	rs2296013	A	T	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	70854183	rs9364074	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	70854208	rs58591338	CAG	C	3848.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	70854818	rs34837646	G	A	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	70854924	rs3841703	A	AT	1113.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	70856536	rs7762409	C	T	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	70859487	rs2346211	A	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	70861135	rs3818327	T	G	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	70866421	rs3736843	T	C	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	70866609	rs2229799	C	T	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	70873331	rs2296010	G	A	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	70875976	rs802174	T	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	70876046	rs802175	T	C	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	70877980	rs1464159	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	70894909	rs2296005	A	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	70897698	rs3749913	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	70909252	rs5877242	AT	A	196.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	70909763	rs3806064	T	C	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	70909779	rs3806065	T	C	128.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	70916830	rs3215860	AT	A	1317.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr6	70916888	rs1200576	A	C	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	70916998	rs1736	G	A	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=24.95;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	70926898	rs1200569	G	A	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	70944442	rs10945205	G	C	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	70944465	rs12191701	A	G	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	70949107	rs45464198	C	T	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	70950281	rs71767894	AAT	A	151.84	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	70962044	rs519068	A	G	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	70965125	rs633762	A	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	70966421	rs58271754	CA	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.383;QD=0.61;ReadPosRankSum=0.310;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:202,57:0.22:259
chr6	70970251	.	CA	C	287.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=0.085;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr6	70970299	rs2024730	C	T	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	70979125	rs551470	A	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	70979193	rs550675	C	T	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	70981827	rs77357454	G	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	70983644	rs151025983	TAATA	T	200.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.671;QD=16.75;ReadPosRankSum=-0.753;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr6	70984251	rs201080821	CT	C	167.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	70984436	rs592121	A	G	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	70984562	rs603304	T	C	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	70989703	rs3806099	A	G	9471.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr6	70990435	rs67240674	T	TC	631.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=1.341;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr6	70991003	rs34962262	GA	G	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.993;QD=10.37;ReadPosRankSum=0.100;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr6	70993157	rs143600390	T	C	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	71004332	rs3840415	TC	T	513.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	71011907	rs202054376	CTTTTTTTTT	C	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.61;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	71011921	rs199556602	T	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.81;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	71137884	rs13202450	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	71137992	rs41265349	C	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	71190577	rs2273210	A	G	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	71232014	rs146416812	GTTTATA	G	859.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	71235885	rs201882246	T	C	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	71236216	rs7740873	C	T	11657.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr6	71236451	rs373718582	TATACACACACACACACATAC	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	71243085	rs146023593	GTA	G	302.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;MQ=61.07;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	71243352	rs9283835	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	71247863	rs78525529	T	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	71269459	rs16869371	C	T	9432.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr6	71269632	rs16869373	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	71276803	rs2293297	T	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	71289189	rs1048886	A	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	71298533	rs13654	A	G	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	71378188	rs781984	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	71482975	rs1413353	G	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	71547371	rs12199707	C	T	66.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	71569090	rs576516	T	C	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	71665473	rs9455275	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	71665479	rs62420336	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.44;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	71665986	rs1574490	G	A	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	71666146	rs1320315	T	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	72010963	rs9346458	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	72091267	rs5877279	T	TTA	480.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=34.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	72678893	rs9342907	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	72809825	rs9360527	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	72836421	rs2463696	A	C	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.00;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	72858416	rs151080929	GTT	G,GT	3679.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.272;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.367;QD=19.17;ReadPosRankSum=0.961;SOR=0.520;set=HC	GT:AD:AF:DP	1/2:10,134,48:0.70,0.25:192
chr6	72889711	rs17725666	G	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	72892257	rs2463730	A	G	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	72892383	rs114505309	G	A	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	72945492	rs2807519	C	T	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	72945603	rs138366781	A	ATTTTC	651.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	72947774	rs2807525	C	T	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	72962352	rs9351902	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	72968609	rs6923891	C	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	72984277	rs4504440	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	73516397	rs9446758	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	73821239	rs2000205	T	C	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	73830423	rs1891404	A	G	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	74072681	rs9446890	G	C	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	74079041	rs497243	A	C	9283.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr6	74104495	rs3832419	C	CG	1223.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	74110212	rs3757106	T	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	74111524	rs60478350	CA	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.572;QD=7.45;ReadPosRankSum=0.647;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:8,31:0.79:39
chr6	74114365	rs5877364	AT	A	2416.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	74119084	rs4708053	T	C	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	74123363	rs9442907	G	A	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	74155491	rs2985419	T	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	74161503	rs9446904	A	G	7770.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr6	74161801	rs9352000	G	T	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	74162010	rs34413328	CA	C	749.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	74171467	rs1713862	C	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	74181194	rs6453676	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	74183444	rs11417913	C	CT	246.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-0.922;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:4,16:0.80:20
chr6	74189574	rs7766570	G	A	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	74190448	rs2036039	T	C	14964.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr6	74201826	rs5877369	CA	C	167.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-0.122;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr6	74202160	rs73452507	A	C	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	74229405	rs4708060	C	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	74310231	rs11349241	CT	C	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.250;QD=6.83;ReadPosRankSum=-1.723;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr6	74342014	.	C	CAA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=0.956;QD=2.34;ReadPosRankSum=-0.684;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr6	74521947	rs2917862	C	T	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	74528293	rs3005506	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	74530421	rs3005537	A	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	74533192	rs2917887	T	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	75795122	rs112607771	G	GCA,GCACA	4213.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=146;set=Intersection	GT:AF:DP	1/2:0.28,0.64:130
chr6	75797302	rs970547	C	T	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	75797549	rs2273264	A	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	75798722	rs672648	C	A	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.808;QD=13.67;ReadPosRankSum=-2.849;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:20,59:0.75:79
chr6	75800931	rs3765496	T	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	75804783	rs10943236	G	A	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	75811291	rs3734191	T	C	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	75814903	rs9447445	T	A	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	75830983	rs619607	C	T	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	75833876	rs240722	C	A	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	75837913	rs9343271	T	C	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	75841722	rs594012	A	T	7072.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr6	75842974	rs2295252	T	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	75844600	rs1332020	C	T	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	75844700	rs1332019	C	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	75847036	rs240734	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	75848181	rs240736	A	G	7064.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr6	75848376	rs240737	C	T	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	75890714	.	GTCACATTGAC	G	5115.73	.	AC=2;AF=1.00;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	75890933	rs34433354	T	TA	167.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.96;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	75893457	rs36085827	TA	T	370.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr6	75901292	rs743003	C	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	75904455	rs240433	A	T	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	75950109	rs56897555	T	TA	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.348;MLEAC=1;MLEAF=0.500;MQ=60.96;MQRankSum=2.079;QD=8.93;ReadPosRankSum=-0.147;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:17,32:0.65:49
chr6	75951719	rs240419	A	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	75953705	rs9360898	T	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	75966269	rs418485	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	75968720	rs147523	G	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	75977591	rs240395	T	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	76022082	rs9352202	A	G	18231.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr6	76022090	rs9343281	G	C	19595.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.96;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,467:1.00:467
chr6	76063133	rs6913979	A	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	76124792	rs2808201	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	76138146	rs5877455	C	CAG	2518.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	76333486	rs655471	G	A	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	76344431	rs17414086	C	T	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	76369054	rs507662	A	G	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr6	76376552	rs17414687	G	A	11350.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr6	76385330	rs17792195	G	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	76421003	rs3765140	A	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	76425288	rs9250	A	G	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	76550839	.	G	GT	122	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	76554593	rs7760587	G	A	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	76566734	rs3798439	T	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	76576527	rs6453845	G	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	76596728	rs2295936	C	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	76604573	rs3798429	T	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	76604797	rs3798427	A	G	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	76617511	rs141652215	A	ATGTGTGTG	596.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;QD=37.30;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	76624741	rs12606	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	76656978	rs3215818	AT	A	1380.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.70;QD=30.68;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	76728583	rs377755519	TA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=3.123;QD=1.11;ReadPosRankSum=0.164;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr6	76782049	rs1320537	C	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.10;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	78171941	rs6297	C	T	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	79424556	.	AATATATATATATATATATATATATATAT	A	177.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.55;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	79577644	rs9350789	A	C	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	79595097	rs6908105	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	79595167	rs146020132	A	ACTTAT	3757.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=44.73;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	79612744	rs35533616	CA	C	19816.73	.	AC=2;AF=1.00;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=35.45;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,559:1.00:559
chr6	79656562	rs2275291	A	T	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	79656570	rs2275290	G	A	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	79675701	rs9350797	A	G	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr6	79708000	rs7747479	A	C	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	79913379	rs67281239	GA	G	292.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr6	79918309	rs9341761	G	A	6004.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	79944096	rs3076135	C	CAG	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	79944355	rs9361504	T	G	10796.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr6	80196848	rs1875845	C	T	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	80228541	rs2655655	A	G	9737.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr6	80228673	rs2803195	T	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	80341034	.	C	T	1468.77	.	AC=2;AF=1.00;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	80341320	rs6926093	CG	GC	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	80382916	rs1883878	G	T	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	80513565	rs149560703	G	GCTCTCTGATATGCCATC	2295.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	80513740	rs45512496	C	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	80517147	rs6915687	C	A	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	80517204	rs6915721	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	80580038	rs9361569	T	G	7654.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr6	80631539	rs700483	T	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	80715838	rs240226	T	G	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	80720487	.	GCAT	G	997.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.57;QD=43.38;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	80720491	rs199573945	T	TAAAGA,TGA	997.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/1:1.00:23
chr6	80720733	rs151587	G	A	140.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	80720742	rs239556	A	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	80721045	rs239558	A	G	92.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	80723198	rs239563	T	C	98.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	80724156	rs2295840	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	80724312	rs239566	A	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	80724462	rs239567	C	T	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	80741328	rs239584	G	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	80741418	rs239585	C	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	80741470	rs9352790	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	80747582	rs150447407	TATAATA	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	80750093	rs2295841	C	G	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	80750290	rs608962	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	80751780	rs652752	G	A	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	80774236	rs7771228	C	T	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	80837239	rs9448893	A	G	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.505;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	80837253	rs9448894	G	T	3226.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.228;QD=22.41;ReadPosRankSum=0.699;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:5,139:0.97:144
chr6	80878508	rs139630496	A	AAGGAAGGGAGGGAGGGAGGG	1650.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=55.02;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	80912746	rs3828753	C	T	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	81053642	rs926733	G	A	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	82459345	.	C	CT	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=4.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-1.339;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:81,24:0.23:105
chr6	82461727	.	ACCGCCGAAGTCGCCG	A	1480.73	.	AC=2;AF=1.00;AN=2;DP=148;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr6	82883238	rs197245	T	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	82944056	.	A	AT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.79;ReadPosRankSum=0.541;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	83075914	rs700494	G	A	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	83602583	rs4706975	C	T	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	83752057	rs4612135	C	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	83754094	rs4455637	T	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	83835175	rs583679	G	T	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	83842055	rs2307912	C	CTCT	14633.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=45.31;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr6	83842101	rs71820880	CACAA	C	7516.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.596;QD=25.57;ReadPosRankSum=1.058;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:45,249:0.85:294
chr6	83861930	rs67926917	TACACAC	TAC,T	925.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=30;set=Intersection	GT:AF:DP	1/1:0.96:25
chr6	83863583	rs647231	G	A	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	83877496	rs495944	T	C	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	83880167	rs473267	C	T	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr6	83880274	rs474213	C	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	83881740	rs542948	T	C	14157.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr6	83896633	rs477061	T	A	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	83898300	rs35905342	GT	G	1169.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:14,78:0.85:92
chr6	83938484	.	T	TAA	2548.73	.	AC=2;AF=1.00;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	83938603	rs2230903	A	G	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr6	83938983	rs9449595	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	83949261	rs1180230	T	C	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	84061864	.	G	GA	439.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-0.640;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:6,26:0.81:32
chr6	84233831	rs504593	G	A	8148.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr6	84290141	.	G	GA	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=0.951;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr6	84368819	rs11368249	TA	T	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=3.963;QD=2.41;ReadPosRankSum=0.928;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:98,55:0.36:153
chr6	84764982	rs45563336	C	T	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	84772845	rs17730011	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	84799185	rs2875382	C	T	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	84799300	rs7450001	G	A	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	84911336	rs2274092	C	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	84935866	rs9449851	A	G	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	85453903	rs142451743	T	TA	2246.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	85470100	rs74671789	G	C	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	85470124	rs78065813	T	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	86180926	rs10944129	A	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	86199233	rs2229523	A	G	8852.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr6	86199329	rs9450284	G	C	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	86224053	rs6454472	T	G	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	86240147	rs4640862	G	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	86246709	rs12193777	C	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	86246716	rs59514276	T	TA	1330.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	86248460	rs9294337	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	86332443	rs79943300	A	C	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	87796233	rs2011192	G	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	87797953	rs200419004	AAAC	A	934.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.677;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:12,45:0.79:57
chr6	87879217	rs9351117	C	G	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	87879376	rs9444480	T	C	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	87879378	rs9359738	C	T	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.57;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	87925824	rs71960404	TAGACACACACACACACACACACAC	T	3267.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=5.206;MLEAC=2;MLEAF=1.000;MQ=66.05;MQRankSum=1.048;QD=34.40;ReadPosRankSum=1.515;SOR=1.768;set=HC	GT:AD:AF:DP	1/1:1,94:0.99:95
chr6	87925874	rs45442199	C	A	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	87965528	rs6908834	T	C	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	87968565	rs9362415	A	G	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	87969480	rs6910541	G	A	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	87969737	rs3734187	C	T	9660.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr6	87970301	rs3812132	C	G	9602.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr6	87994015	rs6934603	A	G	6166.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	87994572	rs4707358	G	A	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr6	88108187	rs9450669	C	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	88119528	rs11350856	TA	T	2948.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	88119693	rs6454616	G	A	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	88119736	rs6915562	T	G	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	88120512	rs6909168	A	G	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	88182704	rs9450704	G	C	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	88218862	rs184000337	T	G	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr6	88221097	.	A	AT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-0.285;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:126,22:0.15:148
chr6	88224029	rs5878032	CA	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-0.462;QD=5.89;ReadPosRankSum=1.755;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr6	88226641	rs9450723	A	G	5878.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr6	88251869	rs7773906	T	A	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	88255438	rs4707374	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	88273971	rs9450740	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr6	88274353	rs9450741	C	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.88;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	88300013	rs9450752	A	G	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr6	88303967	rs7750207	A	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	88315741	rs2307391	TA	T	1956.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=25.09;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	88317675	rs4706294	G	C	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	88331299	rs7772561	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	88331334	rs34542681	TC	T	265.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	88361017	rs7772351	G	A	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	88366602	rs1075665	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	88366771	rs2307379	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	88775746	rs111947503	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	89388023	rs11753513	T	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	89554137	rs201214592	T	C	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	89790559	rs66688820	CTTCA	C	23901.73	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr6	89814711	rs9362618	T	G	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	89814772	rs35869140	CA	C	809.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	89814830	rs7753709	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	89816819	rs72915636	G	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	89894968	rs407206	G	A	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	89895202	rs406462	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.02;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	89895207	rs364936	G	A	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	89907873	rs422751	G	A	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	89914439	rs12524474	A	G	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	89914477	rs1556432	G	A	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	89974063	rs723041	T	C	10395.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:3,418:0.99:421
chr6	89977322	rs58233945	C	CT	2965.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=36.17;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	90315789	rs3748085	A	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	90326471	rs11965767	C	T	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	90327873	rs6909915	G	A	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	90333599	rs17292811	A	G	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	90334101	rs4487551	T	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	90340276	rs3210511	G	A	14811.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,568:1.00:568
chr6	90360757	rs9359858	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	90361811	rs761729	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.12;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	90366329	rs202054662	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.157;QD=2.22;ReadPosRankSum=0.743;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr6	90371202	rs9444701	G	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	90371704	rs9294443	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	90371986	rs3818132	C	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	90381849	rs7764076	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	90385754	rs9451261	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	90387233	rs6454769	C	T	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.27;SOR=2.265;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	90390443	rs9353689	C	A	6814.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr6	90402482	rs9294445	G	A	9344.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr6	90402840	rs9351212	C	G	5382.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	90405306	rs9294446	T	A	9863.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr6	90405993	rs9362672	C	G	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	90415764	rs7743484	A	G	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	90418262	rs2026634	C	T	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	90422627	rs2013736	G	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	90426270	rs9342205	C	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	90428968	rs6454774	G	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	90432584	rs71024396	A	AT	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=26.87;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	90432662	rs756363	C	T	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	90437699	rs7767196	G	A	9783.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr6	90448092	rs4140446	C	T	8772.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr6	90450135	rs2180140	A	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	90453248	rs2273245	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	90453492	rs11358713	AC	A	11291.73	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr6	90454853	rs60588845	T	TA	80.76	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	90455084	rs9359861	A	G	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr6	90455429	rs9444704	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	90459454	rs4053618	G	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	90463149	rs34799081	GA	G	401	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.668;QD=12.15;ReadPosRankSum=-0.553;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr6	90468465	rs6937244	C	A	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	90497448	rs6923604	T	C	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	90497814	rs4707570	G	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	90503766	.	G	GA	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=2.610;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.090;QD=0.97;ReadPosRankSum=0.285;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:154,35:0.19:189
chr6	90605836	rs7738845	T	A	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	90660319	rs9451298	T	C	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr6	90661576	rs2236181	T	C	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	91266350	rs45625637	A	T	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.64;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	91281634	rs35467094	TA	T	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-1.524;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr6	91296420	rs282070	C	G	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	94067981	rs164544	C	T	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	94120192	rs474809	G	A	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	94124530	rs540816	C	A	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	96650908	rs4307180	A	T	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	96651740	rs3811069	A	G	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	96969694	rs13210597	C	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	96974386	rs9320194	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.91;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	96974448	rs139058346	T	C	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	96982111	.	G	GT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-1.109;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr6	96988696	rs2475025	A	T	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	96996228	rs3734238	A	T	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	96999220	rs2475024	G	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	96999725	rs1127175	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	97000341	.	CT	C	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.83;ReadPosRankSum=2.549;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:109,49:0.31:158
chr6	97052754	rs2064947	C	T	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	97058553	rs2273621	A	G	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,202:1.00:203
chr6	97058567	rs2273622	A	G	5734.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	97063522	rs9373985	C	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	97063555	rs9398148	A	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	97247547	rs35358396	C	T	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	97339078	rs6684	A	G	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	97339088	rs11402	C	T	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	97339275	rs34213186	C	CA	730.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.548;QD=13.78;ReadPosRankSum=1.789;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:9,44:0.83:53
chr6	97599612	rs3822908	T	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	97630016	rs199987050	G	GT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=3.062;QD=1.94;ReadPosRankSum=0.072;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr6	97726878	rs2388033	A	T	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	99283376	rs195860	T	G	17201.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,654:1.00:654
chr6	99353272	rs6935315	A	G	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	99374400	rs1011676	G	A	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	99572651	rs11755926	G	A	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	99572771	rs35787630	AT	A	550.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	99771540	rs221527	T	C	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	99781218	rs11757364	G	A	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	99796886	rs2388906	T	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	99817601	rs4144164	A	G	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	99831542	rs35446098	G	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	99853849	rs11309252	CA	C	528.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	99853866	rs7744072	G	A	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	99853880	.	T	A	1763.77	.	AC=2;AF=1.00;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	99883704	rs6570065	T	C	7140.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr6	99883842	rs7745005	C	T	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	99893878	rs12203426	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	99916182	rs10457650	G	A	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	99923899	rs11154875	G	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	100368759	rs4839764	G	A	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	100895344	rs397662	C	T	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr6	100964147	rs240780	G	C	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	101166095	rs41288423	G	A	5620.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	101215223	rs11345864	TA	T	3507.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr6	101215244	rs7746961	A	G	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	101247503	rs3811078	T	C	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	101253788	rs4839792	A	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	101312097	rs846791	C	T	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	102503196	rs2227281	C	T	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	102503317	rs2227283	G	A	7190.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr6	102513865	rs1034253	C	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	105300074	rs2499661	C	G	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	105300084	rs36032116	G	GTT	1434.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.77;ReadPosRankSum=-0.168;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:9,54:0.86:63
chr6	105300105	rs2499662	C	T	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	105300262	rs10635352	C	CAG	3976.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=43.23;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	105307435	rs2499655	G	A	12256.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr6	105388405	rs7766336	T	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.92;SOR=3.664;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	105405220	rs61701350	T	TC	733.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	105548850	rs221657	C	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	105577172	rs9404603	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.31;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	105577224	rs9404604	A	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.646;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	105577401	rs4946656	C	T	3847.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	105595261	rs1190274	G	A	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	105602108	rs1190280	T	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	105614712	rs1190292	T	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	105614743	rs67687316	TTG	T	437.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	105845906	rs6910880	G	A	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	105850712	rs880177	A	G	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr6	106899793	rs7763469	C	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	106959961	rs4946759	A	G	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	106959999	rs1340623	C	G	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr6	106968674	rs1417354	C	T	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	106975415	rs2219666	A	T	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	106987161	rs783397	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	106987370	rs783396	A	C	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr6	106989212	rs783392	G	A	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	106992464	rs1799693	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	106992592	rs2247335	A	T	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	106992844	rs2066201	C	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	106999658	rs1676010	A	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	107001456	rs1770731	A	T	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	107001581	rs1770732	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	107003810	rs2066202	T	C	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	107006347	rs4946763	T	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	107050867	rs6568446	A	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	107069232	rs1870868	G	A	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	107113618	rs17067608	G	A	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	107231881	rs376280113	GTC	G	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.018;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:106,19:0.15:125
chr6	107351457	rs1665924	G	T	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	107361476	rs311207	A	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	107365376	rs7767291	C	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	107365411	rs311249	G	T	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	107372242	rs3833659	GTTTTC	G	3011.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	107566946	rs9373933	A	G	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	107956095	rs9486659	A	G	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	108093324	rs143149232	AC	A	1359.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	108093328	rs9480798	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	108193148	rs642954	C	T	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	108194241	rs579120	T	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	108197998	rs570558	A	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.44;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	108219063	rs9373986	T	C	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	108224599	.	CA	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=1.459;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:241,62:0.20:303
chr6	108243123	rs139413431	AAC	A	711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=0.080;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:39,62:0.61:101
chr6	108277287	rs9486756	C	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	108279290	rs2272884	G	A	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	108372156	rs3757301	C	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	108487877	rs127501	A	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	108489462	rs383319	G	A	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	108495950	rs2233492	G	A	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	108498014	rs10563315	CTG	C	6551.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=41.47;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	108677003	rs2135941	G	A	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	108840870	rs2274776	A	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	108882570	rs11757217	C	T	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.15;QD=27.41;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	109201129	rs17316116	A	C	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	109315901	.	CTTT	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.97;ReadPosRankSum=-0.514;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	109330758	rs148473451	CG	C	329.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	109480681	.	C	CT	863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=5.33;ReadPosRankSum=0.118;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:96,66:0.41:162
chr6	109575596	rs6919557	C	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	109583186	rs1040285	A	G	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	109586062	rs949882	C	T	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	109586240	rs949881	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	109591208	rs9386784	C	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	109591433	rs9400262	T	C	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	109591586	rs9374072	A	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	109615603	rs9487048	G	T	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	109616762	rs9400272	A	G	8423.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr6	109621494	rs6927569	T	C	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	109629420	rs11153168	A	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	109659589	rs57811946	TCACA	T,TCA	2075.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;MQRankSum=0.386;QD=23.86;ReadPosRankSum=0.305;SOR=1.545;set=HC	GT:AD:AF:DP	1/2:6,32,49:0.37,0.56:87
chr6	109761303	rs117406850	T	C	6339.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	109761744	.	G	T	2959.77	.	AC=2;AF=1.00;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	109769336	.	TCACA	TCA,T	92.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=26;set=Intersection	GT:AF:DP	0/1:0.37:19
chr6	109818529	.	TCA	T	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.982;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.601;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:130,24:0.16:154
chr6	109996751	rs829815	T	G	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	110036479	rs6924436	A	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	110048489	rs11459279	C	CT	773.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;QD=18.87;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr6	110053824	rs11377100	G	GT,GTT	854.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.663;QD=14.01;ReadPosRankSum=0.916;SOR=0.625;set=HC	GT:AD:AF:DP	1/2:10,38,13:0.62,0.21:61
chr6	110064255	rs72045093	TATTTC	T	4013.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	110065049	rs149608939	TAAC	T	4441.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	110106234	rs10499054	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	110110943	rs9384723	G	T	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	110113763	rs200535694	CT	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.519;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=5.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.381;SOR=1.233;set=HC	GT:AD:AF:DP	0/1:159,45:0.22:204
chr6	110426583	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.105;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr6	110643956	rs6908306	T	C	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	110644112	rs112341783	A	AG	1758.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	110679062	rs4945854	T	G	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	110679413	rs62435951	A	G	1841.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.815;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=6.849;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.19;ReadPosRankSum=1.482;SOR=0.505;set=HC	GT:AD:AF:DP	1/1:2,81:0.98:83
chr6	110726236	rs17492667	G	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	110746262	rs41288592	C	T	7065.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr6	110760008	rs12210538	A	G	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	110778323	rs717567	G	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	110797214	rs2428188	C	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	110797563	.	A	C	1129	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=4;HapScore=1;MGOF=41;MMLQ=23;MQ=59.71;NF=48;NR=10;PP=1129;QD=20.065020906;SC=AAGCCCAGCTAGGGGCCGGCG;SbPval=0.69;Source=Platypus;TC=60;TCF=48;TCR=12;TR=58;WE=110797584;WS=110797553;set=Platypus	GT:AD:AF:DP	1/1:2,58:0.97:60
chr6	110797576	rs112174035	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.45;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	110797605	rs2494552	G	A	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.34;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	110797612	rs6920997	A	G	7534.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.12;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	110797703	rs150666553	CCGCGGG	C	20273.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=843;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.089;QD=25.66;ReadPosRankSum=-0.971;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:2,788:1.00:790
chr6	110797713	.	C	CCACCCCT	37668.73	.	AC=2;AF=1.00;AN=2;DP=829;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=45.66;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,825:1.00:825
chr6	110797821	rs11153236	A	G	7104.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;QD=26.81;SOR=1.309;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr6	110797905	rs6922017	G	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	111213927	rs34637914	T	TCC	64.14	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	111280332	rs9374225	G	C	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	111280538	rs143233557	G	A	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	111283791	rs12154018	T	A	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	111313072	rs5879083	AT	A	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	111313155	rs3894917	G	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	111318193	rs3763193	T	C	159.79	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	111318294	rs3763194	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	111318382	rs73763466	A	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	111318588	rs12191479	A	G	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	111320735	rs3904924	C	A	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	111321037	rs3763196	A	G	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	111527988	rs402940	G	A	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	111587266	rs11153279	T	C	13583.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr6	111654680	rs5879102	CT	C	123.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.22;ReadPosRankSum=-1.349;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr6	111665023	rs240990	G	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	111665071	rs1623806	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	111695073	rs455645	C	T	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr6	111695268	rs455732	C	T	13150.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,520:1.00:520
chr6	111695887	rs462779	G	A	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	111696257	rs461646	G	A	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr6	111696852	rs458486	T	C	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	111702448	.	T	TA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.827;QD=0.95;ReadPosRankSum=0.407;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr6	111711232	rs11376056	C	CG	2424.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	111714245	.	A	AT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.598;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	111884058	rs2280985	A	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	111896777	rs12192705	C	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.63;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	111896790	rs60481646	CAAAA	C	747.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.39;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	111896796	rs373128911	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=-1.682;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr6	111901453	rs1043730	G	T	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	111918865	rs174393	G	A	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	111918869	rs11153302	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	111919108	rs6941014	T	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	112041359	rs706895	T	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr6	112375644	rs2280153	G	A	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	112382313	rs1230345	G	T	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr6	112407590	rs9766630	G	C	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	112408610	rs6568714	T	C	9963.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr6	112420685	rs17073343	T	G	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	112420703	rs12154150	T	C	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	112430886	rs3734291	T	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	112435264	rs3734290	T	G	7993.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	112435273	rs3734289	A	C	8676.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.33;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	112435444	rs111835795	G	GAAT	3490.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	112435682	rs6916947	G	A	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	112435796	rs6917142	G	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	112435807	rs11969913	G	T	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	112435912	rs1050353	A	T	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr6	112443134	rs4945897	G	A	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	112450351	rs2157550	G	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	112450374	rs66482680	GTGTGTGTGTGTGTGCA	G	783.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	112457383	rs1050349	G	C	15172.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr6	112457390	rs2032567	C	T	15412.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr6	112457471	rs2032568	G	A	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	112460541	rs2072019	G	A	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	112462470	rs149046391	ATG	A	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.027;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:132,17:0.11:149
chr6	112471621	rs3832396	GACAA	G	3620.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=44.16;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	112471688	rs3734286	G	C	10206.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.45;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr6	112476210	rs2277084	T	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	112493872	rs1050348	A	G	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	112506375	rs9374309	G	A	5073.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	112506583	rs6908219	G	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	112508035	rs9400521	C	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	112508769	rs9387061	TG	GT	9240.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	112522852	rs11757455	G	A	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	114181914	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.561;QD=1.32;ReadPosRankSum=0.549;SOR=0.047;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr6	116264354	rs550480	C	A	7344.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr6	116264386	rs57164993	A	AT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=4.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.475;SOR=1.322;set=HC	GT:AD:AF:DP	0/1:84,19:0.18:103
chr6	116288912	rs11398565	T	TA	418.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	116325142	rs3756772	C	T	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	116427506	rs56295720	CT	C	233.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-1.131;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr6	116429623	rs517352	T	A	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	116441229	rs111661664	T	TGGG	2061.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	116574455	rs2232472	G	A	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	116575083	rs2232470	C	A	23038.77	.	AC=2;AF=1.00;AN=2;DB;DP=891;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,882:1.00:882
chr6	116575344	rs910391	T	G	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	116579501	rs11153601	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.32;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	116599665	rs9400897	T	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	116600465	rs78371471	T	TCAC	24835.73	.	AC=2;AF=1.00;AN=2;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.91;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,553:1.00:553
chr6	116600774	rs3749895	C	G	12834.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr6	116600810	rs3828743	G	A	11012.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:2,409:1.00:411
chr6	116757557	rs560644	T	C	8938.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr6	116782488	rs2858833	T	C	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr6	116783330	rs1057192	G	A	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	116783390	rs10784	A	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	116875427	rs7762318	G	A	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	116875493	rs9387420	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	116878947	rs6906668	C	T	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	116892839	rs2295598	C	T	6002.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr6	116901640	rs1321534	G	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	116911413	.	C	CT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.902;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr6	116912033	rs77165075	CT	C	162.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.474;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=1.044;SOR=0.346;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	116943975	rs41289942	G	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	116944260	rs144505667	C	CTTGTT	1343.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr6	116947067	rs78256732	G	A	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	116947906	rs67053288	ATAATT	A	998.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	116950734	rs6927567	G	A	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	116950833	rs784133	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	116968546	rs11325619	AC	A	1329.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	116973182	rs4946188	T	C	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.282;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	116977739	rs11322968	AT	A	216.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	116979930	rs6910565	A	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	116981827	rs3839370	TC	T	276.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.59;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	117019846	rs7357061	G	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	117045674	rs1150108	A	G	80.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	117053238	rs373093102	TA	T	547.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	117053240	.	TATATATATATATATATATA	T	425.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.70;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	117073874	.	AAT	A	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.967;QD=5.31;ReadPosRankSum=-0.243;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr6	117083132	rs17078309	A	C	10323.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr6	117086265	rs641338	C	A	8501.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.343;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.74;ReadPosRankSum=-0.697;SOR=0.471;set=HC	GT:AD:AF:DP	1/1:1,317:1.00:318
chr6	117113761	.	A	AGG,AGGT	6150.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=144;set=Intersection	GT:AF:DP	1/1:1.00:133
chr6	117113762	.	T	TA	6240.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	117113765	.	T	TTCC	6253.73	.	AC=2;AF=1.00;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	117114403	rs6901971	G	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	117121894	rs6917467	G	A	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	117130704	rs2274911	G	A	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	117150008	rs6907580	G	A	6046.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr6	117201985	rs57167027	A	C	465.78	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr6	117203732	.	G	GA	89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.42;ReadPosRankSum=-1.363;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr6	117215300	rs1512654	G	A	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.778;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	117237584	rs2184343	T	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	117243399	rs141258486	AG	A	849.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	117609529	rs2778	A	G	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	117631431	rs552183	T	G	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	117631543	.	A	ATTT	50.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;MQRankSum=0.319;QD=12.73;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr6	117639266	rs498251	A	T	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	117639419	rs497186	T	C	8088.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr6	117641246	rs2243386	C	A	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	117641330	rs75236299	C	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	117649988	rs581235	T	C	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	117650131	rs574664	A	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	117662944	rs17632578	C	T	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	117663499	rs2243385	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	117681436	rs150963992	G	GAC,GACAC	1653.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=36.75;ReadPosRankSum=-0.539;SOR=2.494;set=HC	GT:AD:AF:DP	1/2:1,10,34:0.22,0.76:45
chr6	117686943	rs2243383	A	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	117706760	rs60804513	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.214;QD=0.60;ReadPosRankSum=-1.085;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr6	117714346	rs1535330	C	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	117718303	rs9401003	A	G	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	117724379	rs2243380	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	117724462	rs2243379	C	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	117724499	rs1407179	A	C	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	117725383	.	C	CA	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=2.736;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:36,51:0.59:87
chr6	117725578	rs2243378	T	A	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	117725622	rs2243377	G	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	117730592	rs2273602	G	A	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	117730899	rs2243375	T	G	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	117735716	rs3836983	GA	G	739.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr6	117804117	.	GCGGGGCGGGCCGGGCCGGGCCGAGGGCTA	G	837.73	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	117842759	rs35394851	CTG	C	4786.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=42.36;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	117862048	rs2071825	C	A	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	117864144	rs210619	A	G	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	117865928	rs9320608	C	T	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	117869491	rs210621	G	A	27945.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=25.97;ReadPosRankSum=1.348;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:2,1074:1.00:1076
chr6	117996818	rs9767451	T	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	118475798	rs205966	G	A	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	118635079	rs1572226	C	G	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	118635122	rs283049	G	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	118786486	rs3798420	T	C	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:3,167:0.98:170
chr6	118801232	rs67283653	TCA	T	205.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	118803195	rs35791512	TA	T	259.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=2.022;SOR=0.458;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr6	118832320	rs9489424	T	C	201.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	118886615	rs763254	T	C	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	118886961	rs3734382	G	T	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	118887303	rs3734381	T	C	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr6	118973953	rs9489486	A	G	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	118974042	rs9489487	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	119149149	rs284921	C	G	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	119177480	rs36160966	T	G	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	119344020	rs9481880	C	T	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	119346010	rs1775613	T	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	119509870	rs2142888	G	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	119510739	rs2072888	C	T	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	119510777	rs2072889	T	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	119510941	rs2072890	C	A	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	119522252	rs3822996	G	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	119522306	rs9387641	T	C	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	119531907	rs2267676	T	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	121436422	rs7772508	G	T	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	121491472	rs1273749	G	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	121526447	rs9320795	G	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	121526459	rs35328788	G	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	121526465	rs35549991	G	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	121562774	.	T	C	3856.77	.	AC=2;AF=1.00;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	121576666	rs10650607	T	TTTATAA	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	121620608	rs9387944	G	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	121629167	rs9398629	G	A	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	121632008	rs9372653	T	A	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	122720806	rs6926219	G	A	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr6	122743502	rs487487	T	C	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	122752550	rs149578348	T	TTA	117	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	122772692	rs510283	T	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	122775195	rs499825	A	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	122793033	rs1267941	A	G	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.08;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	122793042	.	C	T	2770.77	.	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.96;SOR=2.187;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	123022496	rs4382328	A	G	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	123038887	rs6920792	CT	GC	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	123039201	rs34684181	T	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	123101348	rs2171068	G	C	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	123319382	rs11154131	C	T	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	123369910	rs6900862	T	C	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	123580675	rs9375235	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	123586300	rs9375238	C	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	123591138	rs1367676	T	A	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	123592184	rs113318627	C	CTGTG	295.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr6	123594450	.	GTC	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=-0.366;QD=4.53;ReadPosRankSum=0.366;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr6	123594510	rs147062785	T	TA	977.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	123595869	rs2873478	A	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	123658825	rs9401658	G	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	123687288	rs2873479	A	C	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	123687432	rs7769808	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	123702499	rs3813328	G	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=24.10;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	123758492	rs9320936	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=23.48;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	123868665	rs7450199	G	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	123869607	rs9490809	G	C	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	123869769	rs66509682	TAA	T,TA	2309.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.46;MQRankSum=0.395;QD=20.81;ReadPosRankSum=-1.080;SOR=1.354;set=HC	GT:AD:AF:DP	1/2:2,89,20:0.80,0.18:111
chr6	124603378	rs1916790	A	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	124603390	rs802497	A	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	124603503	rs713214	G	A	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	124604038	rs41284438	T	C	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	124604055	rs41284440	G	T	2471.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.541;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.478;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=0.630;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,97:0.99:98
chr6	124604235	.	G	A	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=-0.461;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:30,63:0.68:93
chr6	124759018	rs35426962	A	AT	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.555;QD=4.42;ReadPosRankSum=0.760;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr6	124811558	.	G	GTTT	922.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.46;ReadPosRankSum=-0.826;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:10,33:0.77:43
chr6	124979689	rs1479039	T	C	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	125139473	rs1923726	TG	GC	6421.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	125229538	rs781733	T	C	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	125229856	rs781734	C	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	125230075	rs781735	A	C	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	125230575	rs1577203	G	T	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	125230965	rs1761559	A	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=24.43;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	125231037	rs1761560	G	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	125231246	rs1750578	T	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	125232072	rs699387	T	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	125232368	rs781740	G	T	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	125232594	rs781741	C	A	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.74;QD=24.74;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	125232766	rs11385725	C	CA	655.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-0.145;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:11,41:0.79:52
chr6	125232853	rs6569400	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	125233518	rs781742	A	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	125252731	rs4896596	C	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	125284457	rs9401790	T	C	17816.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	1/1:3,695:1.00:698
chr6	125402711	rs492800	C	T	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	125475139	rs2277111	G	A	13324.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,518:1.00:518
chr6	125573194	rs3799734	A	G	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:2,271:0.99:273
chr6	125573312	rs3799733	C	A	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	125623268	.	C	CTCCTCT	1774.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.96;QD=43.29;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	126072853	rs2875881	C	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	126073275	rs113682501	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.58;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	126075698	rs1935978	T	C	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.77;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	126075709	rs202056802	ATT	A	1488.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.35;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	126242004	rs4563736	CG	GC	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	126249755	.	CT	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=1.967;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr6	126278230	rs2295005	G	C	13089.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,507:1.00:507
chr6	126288023	rs3757212	T	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	126307962	rs6569448	A	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	126319881	rs6569449	T	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	126334041	rs2206941	G	A	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	126661502	rs41285260	G	T	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	126669479	rs9401876	C	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	127471791	rs3734626	C	T	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	127476516	rs1892172	G	A	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	127640190	rs9285460	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	128297986	rs4321844	G	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	128304358	rs113581270	A	AC	6365.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.35;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	128307155	rs34209700	T	TA	62.84	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr6	128312033	rs12055782	A	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	128312114	rs5879871	T	TAG	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	128312324	rs9388612	T	C	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	128322437	rs34601789	T	C	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	128327031	rs45582334	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	128330249	rs9321104	T	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr6	128385998	rs4897241	A	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	128388799	rs35030557	G	T	9111.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:1,355:1.00:356
chr6	128388990	rs4897242	A	G	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	128389074	rs4897243	T	C	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	128403745	rs17828130	A	G	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	129381026	rs4404787	C	A	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	129612624	rs1015846	C	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	129622055	rs902373	A	G	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	129712614	rs201895025	A	G	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	129762112	rs2297738	G	A	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	129763197	rs7738519	C	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	129775470	rs2297742	T	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	129777382	rs1811970	C	T	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	129785391	rs1414736	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	129799682	rs2784895	C	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	129802302	rs2275214	G	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	129807483	rs6569604	C	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	129807629	rs2229848	C	T	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr6	129807699	rs2229849	G	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	129807869	rs6938825	C	A	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	129813429	rs142431635	T	TA	1302.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	129823645	rs7754167	A	G	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	129835370	rs13196682	T	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	129929209	.	GAAAA	G	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=2.096;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr6	129955151	rs113829468	G	GA	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.800;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr6	130031215	rs3752536	T	C	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	130105554	.	CAAAAAAAAAAAAAAAA	C	696.73	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr6	130152479	rs7758540	T	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	130154667	rs9492393	T	C	7330.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr6	130154686	rs4629709	A	G	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr6	130164764	rs9321190	G	A	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	130164856	rs9402185	C	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	130364087	rs79364477	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	130370731	rs142539365	TTG	T	2260.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	130378833	rs12661188	T	C	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	130381246	rs7451021	T	C	6754.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr6	130387431	.	G	GTATATA,GTATA	1292.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=37;set=Intersection	GT:AF:DP	1/1:0.94:36
chr6	130405020	rs7774174	A	G	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	130415294	rs57117596	A	C	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.31;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	130415355	rs58515674	C	A	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr6	130415613	rs58859724	A	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	130454616	rs111502673	C	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	130466413	rs4897369	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	130483222	rs9321214	G	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	130504494	rs56974436	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=2.755;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	130504496	rs199740620	G	A	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=2.625;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr6	130505128	rs144208556	TGA	T	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:29,5:0.15:34
chr6	130530815	rs1932100	C	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	130535420	rs4897377	G	A	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	130536494	rs34071457	AT	A	2533.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:3,128:0.98:131
chr6	131481394	rs67922791	CA	C	281.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	131490472	rs1408027	T	C	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	131904704	rs60712846	G	GA	746.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	131940896	rs12526077	C	T	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	131948469	rs60163644	GA	G	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.815;QD=0.90;ReadPosRankSum=2.063;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:154,54:0.26:208
chr6	131948816	.	T	TA	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.672;QD=1.46;ReadPosRankSum=-0.665;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:123,34:0.22:157
chr6	131958485	rs9375819	A	C	7094.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr6	131998001	.	G	GT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.747;QD=1.37;ReadPosRankSum=0.164;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:73,20:0.22:93
chr6	132043349	rs378697	A	T	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	132061420	rs17601580	G	A	6953.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	132061605	rs67914728	C	T	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	132068060	rs145544747	A	G	5206.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	132113403	rs9493099	T	C	8499.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr6	132168996	rs67733446	GGT	G	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.772;QD=4.95;ReadPosRankSum=-0.379;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr6	132189067	.	C	CT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.391;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr6	132270728	rs59140114	GA	G	1112.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.402;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.375;QD=16.86;ReadPosRankSum=1.069;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:3,63:0.95:66
chr6	132270976	rs111274511	T	TA	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	132271740	rs73779160	A	G	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	132271952	rs7451102	G	C	9672.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr6	132271959	rs12206231	T	G	9607.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.28;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	132271980	rs6934749	T	G	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	132618518	rs41286160	G	A	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	132618547	rs41286162	G	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	132641675	rs599660	T	C	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	132644035	rs604196	G	A	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	132713213	rs117549859	A	G	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	132722512	.	C	A	4994.77	.	AC=1;AF=0.500;AN=2;DP=324;set=Intersection	GT:AD:AF:DP	0/1:89,233:0.72:322
chr6	132789363	rs3765577	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	132859609	rs2842899	T	A	8299.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr6	132860522	rs2842898	C	G	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	132860543	rs17061384	C	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	132929904	rs3813352	C	T	13902.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr6	132929911	rs3813351	A	G	8322.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=-0.693;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:2,324:0.99:326
chr6	132930158	rs35751778	T	C	12499.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr6	132930277	rs35927289	G	A	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	133045812	rs2294758	G	A	8982.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr6	133045902	rs2294759	A	G	6721.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr6	133048213	rs9493417	G	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	133052616	rs4895943	C	T	8303.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr6	133055610	rs764262	G	T	15502.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr6	133055610	.	GGG	TGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=4;HapScore=1;MGOF=7;MMLQ=26;MQ=59.88;NF=85;NR=62;PP=2947;QD=20;SC=AAGTATAAAAGGGTAATACCT;SbPval=0.62;Source=Platypus;TC=152;TCF=85;TCR=67;TR=147;WE=133055620;WS=133055600;set=Platypus	GT:AD:AF:DP	1/1:5,147:0.97:152
chr6	133055612	rs764263	G	C	15502.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.28;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr6	133070995	rs4895944	G	T	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr6	133072650	rs1883617	A	G	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	133074645	rs9493425	A	G	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	133074663	rs9493426	T	C	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.266;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	133077063	rs1883613	T	C	5577.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.389;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.35;ReadPosRankSum=-0.683;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:1,219:1.00:220
chr6	133079136	rs3901670	A	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	133093231	.	C	CA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=3.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.922;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr6	133135807	rs9493450	C	T	8840.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr6	133135864	rs12202302	T	G	21518.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr6	133135886	rs9483504	A	G	21638.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr6	133136041	rs9493451	C	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	133137111	rs3778174	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	133138010	rs9389034	T	C	8676.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr6	133138067	rs34924584	ATT	A	1396.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;QD=22.90;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:9,52:0.85:61
chr6	133703325	rs2235485	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	133769120	rs3736704	A	G	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	133789728	rs9493627	G	A	10403.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr6	133827148	rs6929656	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	133827354	rs2277083	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	133836330	rs3777887	C	T	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	133844137	rs41286206	C	A	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	133849789	rs3822939	A	G	9037.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr6	133852127	rs17053542	A	T	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	134210497	rs5880197	G	GTCTC,GTC	2643.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=79;set=Intersection	GT:AF:DP	1/1:0.97:67
chr6	134305494	rs2273097	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	134494548	rs1743965	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	134494708	rs199505223	G	GA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=0.65;ReadPosRankSum=1.679;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr6	134495291	rs3215438	T	TC	372.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	134528407	rs116971975	C	T	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	134536272	.	C	T	890.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.26;ReadPosRankSum=0.172;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr6	134536290	rs73560868	G	C	767.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.42;ReadPosRankSum=0.602;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr6	135254292	rs116958746	T	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	135271328	rs4646870	C	A	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	135286438	rs35078158	CA	C	495.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=0.889;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr6	135286505	.	T	C	25	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=2;HapScore=2;MGOF=9;MMLQ=23;MQ=60.0;NF=1;NR=3;PP=25;QD=14.9428031368;SC=GGGAAAATTATGGTGAAAGAA;SbPval=0.68;Source=Platypus;TC=4;TCF=1;TCR=3;TR=4;WE=135286513;WS=135286495;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	135287533	rs13064	A	G	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr6	135290355	rs35571217	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	135299713	rs9376077	C	G	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	135299959	rs13214669	T	C	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	135307740	rs4376365	T	C	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	135314182	rs7741626	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	135314265	rs7761964	T	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	135318854	rs4895439	A	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	135323779	rs72972165	C	G	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	135324051	rs45544135	T	C	241.84	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	135324052	rs140431690	TTTAAA	T	232.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	135358567	rs7742542	T	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	135375762	rs2297338	G	A	20729.77	.	AC=2;AF=1.00;AN=2;DB;DP=795;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,791:1.00:791
chr6	135424203	rs6930223	G	T	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	135511108	rs210796	A	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	135522939	rs743589	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	135523774	rs7762830	A	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	135524516	rs9385719	A	G	10569.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=25.29;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,418:1.00:418
chr6	135524520	rs113909655	T	TTGG	7582.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=1.158;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.642;QD=23.55;ReadPosRankSum=2.202;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:11,311:0.97:322
chr6	135524553	rs9402696	C	T	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.58;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr6	135639644	rs6914831	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	135748200	rs2757639	A	G	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	135752608	rs2614270	T	C	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	135754471	rs737561	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	135763585	rs2614274	T	C	253.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	135763866	rs2757645	G	A	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	135813251	rs9402709	G	T	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	136172996	.	CT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.242;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:74,21:0.22:95
chr6	136359714	rs76393848	C	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	136472185	rs35539959	G	GA	1041.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	136472439	rs4896201	G	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	136472496	rs4896202	T	G	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	136552569	.	CA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-1.532;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr6	136582194	rs141067744	T	TAAA	161.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr6	136582203	rs74299323	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr6	136582417	rs62431283	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:75,47:0.39:122
chr6	136582497	rs62431284	G	T	8182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.419;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-7.206;QD=12.51;ReadPosRankSum=-2.043;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:268,386:0.59:654
chr6	136589425	rs77081633	G	T	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.444;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=11.125;MLEAC=1;MLEAF=0.500;MQ=49.51;MQRankSum=-3.773;QD=12.76;ReadPosRankSum=-0.419;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr6	136590613	rs62431285	T	C	2122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-2.501;QD=8.56;ReadPosRankSum=-4.201;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:137,111:0.45:248
chr6	136590640	rs62431286	A	C	3715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.793;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-2.835;QD=8.62;ReadPosRankSum=-0.276;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:229,202:0.47:431
chr6	136590698	rs62431287	C	T	7715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.897;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-5.979;QD=12.84;ReadPosRankSum=-0.190;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:381,220:0.37:601
chr6	136590712	rs62431288	C	T	7405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.953;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=4.309;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-5.552;QD=12.75;ReadPosRankSum=-5.167;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:377,204:0.35:581
chr6	136594292	rs7381749	T	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=7.534;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-7.614;QD=1.01;ReadPosRankSum=-2.929;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:271,53:0.16:324
chr6	136595439	.	T	TA	34	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.7323;HP=13;HapScore=2;MGOF=80;MMLQ=27;MQ=60.23;NF=0;NR=3;PP=34;QD=13.0;SC=ACAGTTCTTTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=3;WE=136595447;WS=136595429;set=Platypus	GT:AD:AF:DP	1/0:1,3:0.75:4
chr6	136597004	rs7762367	A	G	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=10.896;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-3.912;QD=5.49;ReadPosRankSum=-4.803;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:161,85:0.35:246
chr6	136597262	rs1967444	T	C	7585.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:262,369:0.58:631
chr6	136597281	rs1967445	A	T	13815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.179;QD=22.69;ReadPosRankSum=0.976;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:250,359:0.59:609
chr6	136597288	rs1967446	A	C	13734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.477;QD=22.66;ReadPosRankSum=1.617;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:255,351:0.58:606
chr6	136598895	rs58951987	T	TA	144.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	136599393	rs6940018	G	C	12206.77	.	AC=1;AF=0.500;AN=2;DB;DP=955;set=Intersection	GT:AD:AF:DP	0/1:366,570:0.61:936
chr6	136599404	rs6919254	T	C	11135.77	.	AC=1;AF=0.500;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	0/1:349,537:0.61:886
chr6	136599822	rs9942517	C	G	2287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-3.207;QD=9.57;ReadPosRankSum=2.971;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:119,120:0.50:239
chr6	136599836	rs9942518	G	A	4730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.450;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-3.380;QD=18.13;ReadPosRankSum=3.844;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:137,124:0.48:261
chr6	136599842	rs9942519	G	A	4821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-3.429;QD=17.47;ReadPosRankSum=3.679;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:147,129:0.47:276
chr6	136599910	.	T	TGTATCGCTTCTTTCTAGAATGAGATCTTGATCTTGATCG	1183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.692;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=69.847;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-3.643;QD=9.18;ReadPosRankSum=-6.570;SOR=6.672;set=HC	GT:AD:AF:DP	0/1:93,36:0.28:129
chr6	136681291	rs71727934	C	CT	109.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.32;ReadPosRankSum=1.480;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	136682172	rs2076190	G	A	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	136698697	rs2076192	C	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	136710582	rs144407106	C	T	10900.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.47;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr6	136710669	rs58458173	TA	T	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.207;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.262;QD=2.14;ReadPosRankSum=0.113;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:144,84:0.37:228
chr6	136878751	rs34705939	GT	G	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.823;QD=0.62;ReadPosRankSum=-0.336;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:108,28:0.21:136
chr6	137026266	rs9321567	T	G	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.06;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	137113137	rs55666429	G	A	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	137143611	rs1321470	A	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	137143709	rs1321471	T	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	137143980	rs11283064	G	GGGGGCC	1245.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=42.96;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	137166650	rs2295592	A	G	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	137166682	rs927181	G	A	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	137167445	rs9321575	T	C	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	137187641	rs1884940	G	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	137191825	rs13204996	C	G	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	137191970	rs34118640	G	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	137245342	.	G	T	7627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=-0.626;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:240,364:0.60:604
chr6	137325847	rs1555498	C	T	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=25.51;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	137325901	.	TAA	T	1137.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.829;QD=17.78;ReadPosRankSum=0.580;SOR=0.392;set=HC	GT:AD:AF:DP	1/1:15,49:0.77:64
chr6	137338276	rs433243	A	G	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	137338352	rs451371	G	T	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.69;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	137338357	rs442663	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	138192324	rs3214646	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.405;QD=1.25;ReadPosRankSum=0.015;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr6	138195961	rs71670547	TCTC	T	1888.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=42.93;SOR=2.007;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	138197331	rs661561	A	C	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	138417415	rs2484067	T	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	138751629	rs61747081	G	C	8841.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr6	138753337	rs2039121	C	T	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	138754323	rs2327891	A	G	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	138768408	rs2277087	A	T	62.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	138794628	rs7765573	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	138794743	rs7765940	C	T	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	138820271	.	GAC	G	85.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr6	139085450	rs4243458	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=23.25;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	139114113	rs6570282	A	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	139183879	rs12204850	G	A	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr6	139186457	rs12198757	C	T	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	139189136	.	C	CAAAAA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.35;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	139202014	rs1157050	G	C	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.42;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	139207910	rs1188831	C	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	139229695	rs1188867	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	139229743	rs1188868	C	T	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;MQ=59.55;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	139265882	rs1188897	T	A	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	141004964	rs5880480	G	GT	3002.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	141005059	rs4535568	G	A	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	142455130	rs225607	C	T	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	142455731	rs9376674	C	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	142487469	rs225656	C	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	142490107	rs225661	T	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	142490211	rs11758623	A	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	142491463	rs11446143	C	CG	1417.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	142491584	rs225663	A	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=25.63;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	142491729	rs56185739	C	A	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	142510676	rs3830800	GTATT	G	2402.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	142691950	rs71643377	CT	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-1.067;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr6	142703137	rs2143390	C	T	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr6	142705070	rs41289839	G	A	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	142718801	rs989946	G	A	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr6	142724918	rs9496369	C	T	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	142758631	rs1262686	A	G	7386.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr6	143074700	rs169098	T	C	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	143081035	rs9496457	A	G	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr6	143081847	rs197462	A	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	143090633	rs75657229	T	C	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	143090734	rs34530989	T	C	8545.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr6	143091263	rs109836	A	G	5801.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	143091769	rs34947356	G	A	8622.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr6	143382254	.	CGTGT	C,CGT	5383.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=1.026;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.308;QD=24.92;ReadPosRankSum=-1.645;SOR=0.567;set=HC	GT:AD:AF:DP	1/2:15,57,144:0.26,0.67:216
chr6	143605472	rs9403480	G	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	144032317	rs2488101	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	144032822	rs2488102	A	T	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	144086394	rs9496767	G	A	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	144104469	rs1012753	A	T	203.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.52;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	144258619	rs1884087	G	A	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	144258650	rs1884088	C	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	144258670	rs3215583	C	CA	568.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr6	144765462	rs147779975	C	T	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	144794785	rs4259269	C	T	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	144796045	rs73780588	A	G	388.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	144803544	rs200742072	G	GTTA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.349;QD=12.88;ReadPosRankSum=0.008;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr6	144803547	rs4310077	G	A	447.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=37.31;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	144806691	rs9496982	C	T	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	144814647	rs144902799	ATC	A	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-1.501;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr6	144843089	rs200015334	A	AT	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.92;ReadPosRankSum=0.265;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr6	144843091	rs13208386	A	T	581.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.36;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	144852201	rs12204734	G	A	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	144869785	rs1534443	A	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	144870040	rs1534442	T	C	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	144872272	.	GAC	G	210.75	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	144875793	rs58746549	A	AT	553.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	144999798	rs11155369	G	C	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	145114935	rs4243475	A	G	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	145118941	rs41285041	A	G	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	145124151	rs9399503	A	G	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	145124295	rs59277223	C	A	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	145822992	rs380883	A	G	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	145823642	rs370653	G	A	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	145823844	rs391524	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	145947080	rs1045820	C	T	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.61;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	146125466	rs9403747	T	G	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	146125793	rs3811102	A	T	9692.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr6	146126419	rs9373475	C	T	10026.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr6	146207465	rs1062068	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	146207502	rs11421576	G	GT	1354.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	146207563	rs1062067	A	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	146207657	rs2256998	A	C	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	146216184	rs2247206	C	T	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.208;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	146975204	rs12205484	T	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	146993306	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=1.995;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:93,18:0.16:111
chr6	147042695	rs11273150	A	AGGGAACATGCAATAATAAGATTTTTAGAGGC	3309.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=43.55;SOR=2.630;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	147047341	rs3747754	T	C	7237.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr6	147049641	rs11155480	T	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	147049899	rs1327669	T	C	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	147054241	rs146394886	A	ATTAATGTAC	946.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	147054410	rs67991595	T	TA	1885.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	147054450	rs3761782	A	C	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	147054498	rs3761783	G	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	147062220	rs1327666	C	T	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	147066954	rs9647636	G	A	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	147067093	rs9647637	C	T	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	147073639	rs140827988	TATA	T	3553.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	147084985	rs7752601	T	C	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	147103416	rs259405	C	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	147136212	rs1052444	A	T	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	147136244	rs259370	A	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=24.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	147136444	rs1052449	A	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	147635318	rs5880705	T	TAC	1403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.64;ReadPosRankSum=1.676;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:15,53:0.78:68
chr6	148051210	.	CA	C,CAA	342.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=1.428;SOR=0.713;set=HC	GT:AD:AF:DP	1/2:13,27,19:0.46,0.32:59
chr6	148664242	.	T	TGAGCCC	13499.73	.	AC=2;AF=1.00;AN=2;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,301:0.99:303
chr6	148664258	.	C	CCCGAGT	2978	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=18;MMLQ=24;MQ=61.79;NF=33;NR=86;PP=2978;QD=20;SC=CGAGCCCGAGCCGGAGCCCGA;SbPval=0.68;Source=Platypus;TC=160;TCF=49;TCR=111;TR=119;WE=148664266;WS=148664248;set=Platypus	GT:AD:AF:DP	1/0:41,119:0.74:160
chr6	148701197	rs4897000	A	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	148848919	rs2110198	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	148854984	rs2294787	G	A	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	149285719	rs3734377	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	149539773	rs2272901	G	A	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	149691291	rs35974009	AT	A	928.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=33.17;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	149700491	rs3734296	G	A	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	149700805	rs2031450	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	149718650	rs237028	C	T	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	149719400	rs628488	G	A	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	149721690	rs237025	G	A	11252.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.40;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,443:1.00:443
chr6	149730846	rs652921	G	A	5963.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr6	149772190	rs112722576	G	A	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	149772645	rs415434	A	G	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	149773721	rs1001242	C	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	149795692	rs556775	G	A	7779.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr6	149846372	.	T	TA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.339;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr6	149855742	rs761617	C	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	149887444	rs62439782	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	149893214	rs140440002	A	AAAAT	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	149953835	rs9322202	A	G	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	149953981	rs9800580	C	T	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	149983216	rs3924871	G	A	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr6	149997657	rs62439843	T	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	150004779	rs3798761	A	G	10726.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr6	150023348	rs4870509	C	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	150039148	rs12174349	G	A	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr6	150052698	.	T	TA	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.588;QD=10.94;ReadPosRankSum=-1.495;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	150064733	rs34447002	CA	C	190.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	150064968	rs58509133	C	CT	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	150064977	rs1572229	T	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	150067675	rs10872646	A	G	14451.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,558:1.00:558
chr6	150093678	rs3805748	C	T	7449.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	150093682	rs3805749	C	T	7665.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	150094152	.	GA	G	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.579;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr6	150114606	rs12182220	C	T	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	150114745	rs4816	G	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	150123316	rs11297063	CT	C	701.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:9,49:0.84:58
chr6	150163911	rs2275045	T	C	4862.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	150164378	rs2184370	G	A	10150.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr6	150184882	rs9322225	G	C	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	150209196	rs9968871	G	A	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	150209204	rs9969044	A	G	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	150209309	rs9322228	C	G	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,150:0.99:152
chr6	150209432	rs7774787	G	A	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	150209717	rs2342767	C	G	12815.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,489:1.00:489
chr6	150209805	rs10671072	T	TAA	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=0.568;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:20,35:0.64:55
chr6	150209828	rs2342768	A	G	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr6	150209849	rs5880858	TA	T	191.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	150210681	rs9371533	G	A	13262.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr6	150210685	rs9383921	C	T	13263.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr6	150210802	rs6933882	A	G	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	150210994	rs6939761	T	C	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	150210999	rs3823021	G	C	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	150211123	rs2151910	A	T	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	150212003	rs9383583	C	T	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	150212150	rs9371539	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	150239330	rs17079029	C	T	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr6	150240083	rs9383944	T	C	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	150240829	rs9397449	G	C	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	150244216	rs71656790	TGTCTGAATGCAGCCC	T	8768.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	150244261	rs9397451	C	A	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=26.61;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	150263186	rs4343924	A	C	25220.77	.	AC=2;AF=1.00;AN=2;DB;DP=991;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,978:1.00:978
chr6	150266578	rs149454018	T	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:70,49:0.41:119
chr6	150267527	rs2282235	A	C	12657.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.08;MQRankSum=2.054;QD=25.67;ReadPosRankSum=1.240;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:1,492:1.00:493
chr6	150289707	rs4870163	C	T	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=25.43;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr6	150341990	rs9397120	A	G	9393.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.51;QD=45.60;SOR=2.082;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	150341993	rs9384047	C	A	9599.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.86;QD=43.44;SOR=1.896;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr6	150342232	rs61730071	G	A	20215.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.43;QD=25.95;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,779:1.00:779
chr6	150346532	rs1543547	T	C	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	150346740	rs1544123	A	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	150385730	rs912558	T	G	7942.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr6	150385977	rs912557	C	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	150387302	rs669009	A	T	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.78;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	150387312	rs6935471	A	G	5407.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	150390313	rs622317	G	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:3,68:0.96:71
chr6	150464356	rs2297672	A	G	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	150713769	rs672766	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	150716696	rs612421	T	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	151116876	.	C	CAT	22	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.4999;HP=7;HapScore=2;MGOF=4;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=22;QD=15.5;SC=AAACAAAAAACATATATATAT;SbPval=0.74;Source=Platypus;TC=6;TCF=3;TCR=3;TR=2;WE=151116884;WS=151116866;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr6	151142261	rs803387	T	C	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	151152656	rs803411	T	C	9196.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr6	151186857	.	C	CCCG	6370.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=1.269;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.126;QD=38.15;ReadPosRankSum=2.205;SOR=0.421;set=HC	GT:AD:AF:DP	1/1:10,157:0.94:167
chr6	151187349	rs9397361	C	G	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	151197152	rs2073067	C	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	151199071	rs2073063	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	151204173	.	A	AT	104.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.52;ReadPosRankSum=1.248;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr6	151219963	rs149723194	G	GATTATT	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:1,12:0.92:13
chr6	151220245	rs803419	A	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	151247439	rs803455	A	G	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr6	151258127	rs742830	G	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	151259770	rs6933598	C	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	151260002	rs3734416	T	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	151266504	rs803445	C	T	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	151266717	rs803444	G	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	151270369	rs803471	G	A	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	151281567	rs1771798	T	C	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	151281707	rs1771796	A	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	151286224	rs1627462	A	C	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	151336313	rs6910091	T	G	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	151336739	rs509474	C	G	8771.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr6	151362895	rs140096864	CTTG	C	5337.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr6	151362942	rs1983750	T	C	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	151413828	rs2295734	C	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	151561921	rs5880922	TG	T	1616.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=40.42;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	151626774	rs9397388	T	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	151665302	rs6941075	T	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	151669459	rs376944975	CAAAA	C	855.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.574;QD=30.56;ReadPosRankSum=-0.650;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:4,24:0.86:28
chr6	151669875	rs10872670	A	G	4093.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.51;ReadPosRankSum=0.494;SOR=1.391;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr6	151670172	rs3734799	A	C	6827.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr6	151670897	rs900654	T	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr6	151674116	rs3842128	T	TGAG	17908.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=45.69;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr6	151674326	rs3823310	A	C	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	151686905	rs11155787	C	T	10561.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr6	151742541	rs4870017	T	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	151743795	.	T	C	974.77	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	151773504	rs13201167	T	C	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	151857370	rs1532401	T	C	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	151857594	rs6931664	A	G	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	151859314	rs4870034	A	G	6641.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	151869725	rs3842129	A	AT	811.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	151894278	rs4242277	G	T	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	151894505	rs953767	T	C	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	151939181	rs3734804	G	A	6348.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr6	152201875	rs4986934	T	C	3450.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.737;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=-0.939;SOR=0.328;set=HC	GT:AD:AF:DP	1/1:1,135:0.99:136
chr6	152265282	rs55740371	A	AT	1569.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:4,70:0.95:74
chr6	152265522	rs1801132	G	C	7598.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr6	152446316	rs2813561	C	T	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	152446320	rs2813562	C	T	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	152446487	rs2813563	C	T	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	152452073	.	TGAA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.000;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr6	152489294	rs998147	T	C	5412.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr6	152534768	rs34891041	C	T	11808.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr6	152534946	rs684807	T	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	152539572	.	T	TA	912.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.552;QD=12.17;ReadPosRankSum=0.527;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:17,58:0.77:75
chr6	152540278	rs2147377	A	C	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	152545865	rs17082358	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	152552375	rs2274142	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	152558197	rs11751190	G	A	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	152565897	rs3888239	T	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	152570415	rs6557210	G	A	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,210:0.99:212
chr6	152629772	rs55633181	GA	G	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.656;QD=9.10;ReadPosRankSum=1.276;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr6	152629815	rs4112833	C	T	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	152630946	rs12662994	C	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	152631256	rs11292345	CA	C,CAA	124.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	0/1:0.71:17
chr6	152655498	.	ACT	A	34	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=34;QD=34.5;SC=ACCTTTAAACACTCTAAGTTC;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=2;WE=152655507;WS=152655488;set=Platypus	GT:AD:AF:DP	1/0:8,2:0.20:10
chr6	152688567	rs7775637	C	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	152697706	rs214955	C	T	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	152702062	.	A	AT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=8.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.268;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr6	152708310	rs214950	G	A	4805.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	152711395	rs214943	T	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	152712715	rs10687832	G	GAAAAAAA	420.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;QD=35.06;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	152712752	rs214944	C	T	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	152717896	rs78034368	T	C	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.237;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	152719602	rs488673	G	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	152721029	rs214951	T	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	152722228	rs177330	A	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	152725239	rs143864698	G	GATAT,GATATAT	1369.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.85;ReadPosRankSum=1.177;SOR=1.148;set=HC	GT:AD:AF:DP	1/2:2,18,23:0.42,0.53:43
chr6	152725253	rs28402070	C	T	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=20.63;ReadPosRankSum=0.830;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:6,41:0.87:47
chr6	152751426	rs554608	A	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	152751558	rs553642	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	152768796	rs502268	T	G	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	152772264	rs214976	A	G	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	152774917	rs214973	A	G	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	152776750	rs214968	G	A	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	152777819	rs214967	G	A	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	152779933	rs34610829	G	A	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr6	152782628	rs506181	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	152782933	rs579464	G	A	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	152793412	rs4523096	C	A	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	152793572	rs4331993	T	A	2049.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.072;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=-1.700;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:19,102:0.84:121
chr6	152793575	rs4343926	A	G	5734.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.56;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	152805889	rs9397512	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	152809527	rs9397106	A	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	153296541	rs2073260	G	C	7464.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr6	153296772	rs9479472	A	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	153311001	rs3860814	A	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.25;QD=25.51;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	153315921	rs3799133	G	A	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	153323594	rs3818123	C	T	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=25.69;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr6	153323709	rs3818125	T	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	153323896	rs3818127	T	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	153332926	rs34837755	AATAAT	A	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=43.14;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	153345309	rs545323	C	T	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	154428537	rs650825	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	154428666	rs677830	C	T	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	154428702	rs650245	A	G	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr6	154429085	rs71021021	AT	A	214.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	154431565	rs606545	G	A	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	154727825	rs12528985	C	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	154735973	rs13219628	C	T	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	154743525	rs7771159	T	C	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	154749225	rs9384217	A	T	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	154762376	rs199812742	CAA	C	2015.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.16;ReadPosRankSum=0.109;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:2,57:0.97:59
chr6	154762394	rs9384219	A	G	2594.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.16;ReadPosRankSum=-0.740;SOR=0.429;set=HC	GT:AD:AF:DP	1/1:1,67:0.99:68
chr6	154771277	rs9322467	A	G	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	154771449	rs4870285	T	C	12587.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.68;ReadPosRankSum=-0.907;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:2,508:1.00:510
chr6	155109168	.	G	GT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.267;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr6	155116285	rs79232250	TTC	T	3007.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	155124583	rs3757291	T	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.73;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	155129784	rs66499928	CCTTT	C	4142.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	155485535	rs1032140	G	A	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	155485554	rs1032141	G	A	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.097;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	155486519	rs41284214	G	A	5898.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	155486643	rs73795328	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	155489849	rs73795336	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	155561564	rs11751085	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	155561760	rs4259257	T	C	6166.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr6	155561796	rs11751128	C	T	7024.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	155561877	rs41284216	C	T	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	155565089	rs6902025	TC	CT	6230.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	155565744	rs6907595	T	C	7602.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr6	155566904	.	TGCA	T	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.591;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr6	155571113	rs3011902	A	G	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	155571697	rs1041474	T	C	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	155573331	rs3011898	A	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	155574198	rs2989458	C	T	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr6	155574207	rs2274824	T	C	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	155575546	rs1331213	C	G	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	155575607	rs3011895	G	A	11677.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr6	155728232	rs12524299	C	T	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	155732616	rs35270935	C	CT	513.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr6	155750035	rs231954	C	T	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	155750219	rs231955	G	A	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	155757811	rs56095190	C	T	144.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	155761307	.	C	CA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.979;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=11.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.689;SOR=0.029;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr6	156275691	rs4870405	G	T	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr6	157101072	rs1261893	A	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	157405761	rs3734440	G	A	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	157405930	rs3734441	G	A	13301.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:32,569:0.95:601
chr6	157950088	rs17541624	G	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	157950346	rs9457707	T	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	158068481	rs616538	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	158074504	rs636169	A	G	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	158327055	rs17574013	C	T	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	158364018	.	C	T	359.77	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	158438933	rs1109511	G	A	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	158475941	rs2296510	T	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	158487406	rs1009012	A	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	158487734	rs3215807	C	CT	3697.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	158489778	rs2296509	C	T	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	158492605	rs13197160	G	A	8438.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr6	158495863	rs12203105	G	A	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	158502527	rs1744177	C	T	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr6	158502590	rs173263	C	A	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	158502654	.	TTTTTTTTTTTTTTC	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.288;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.90;ReadPosRankSum=1.872;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	158505088	rs1744173	A	G	10141.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr6	158505241	rs1750036	G	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	158507840	rs1744170	C	T	12423.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr6	158509750	rs350289	A	G	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	158569886	rs9356399	T	C	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	158570024	rs71027384	A	AT	347.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr6	158571501	rs6929274	G	A	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	158571655	rs6929520	G	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	158579237	rs6933016	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	158611655	rs9459639	A	T	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	158611904	rs34815722	AGT	A	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	158611969	rs9459642	G	A	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr6	158735087	rs9364951	C	T	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=1.222;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	158735090	rs7756620	T	C	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	158870081	rs705956	A	G	7642.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr6	158873023	rs341139	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	158873376	rs827958	T	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	158882836	rs587385	A	G	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	158910491	rs2274884	T	C	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	158910543	rs2274883	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	158924088	rs914690	T	C	12426.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.68;ReadPosRankSum=-1.048;SOR=0.350;set=HC	GT:AD:AF:DP	1/1:1,483:1.00:484
chr6	158993341	rs34964890	CATA	C	5478.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	158994577	rs4709217	T	G	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr6	159028476	rs3734475	G	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	159028488	rs3734474	C	T	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	159029237	.	CAGGTGCTGACCCCGCAGAGGTATGGGGTGCTCTCTGCT	C	1833.73	.	AC=2;AF=1.00;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,70:0.97:72
chr6	159029342	rs6925091	G	C	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	159029873	rs189304472	TA	AT	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	159046076	rs6905898	T	G	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	159047536	rs16900886	C	T	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	159049367	rs4708800	T	C	11869.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.20;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr6	159050889	rs2278612	C	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	159065758	rs2306751	C	G	13920.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,555:1.00:555
chr6	159178345	rs901363	C	T	6981.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr6	159181885	rs3127155	G	A	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	159183351	rs9347251	T	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	159184462	rs2291387	A	G	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr6	159185427	rs7775997	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	159185563	rs3123101	T	A	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	159188128	rs2242318	A	G	7396.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr6	159191788	rs3212308	C	T	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	159192045	rs1038537	A	G	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	159192575	rs3127181	A	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	159197371	rs9346767	T	C	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	159204426	rs7769862	T	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	159204786	rs3123111	C	T	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	159205475	rs3127217	T	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	159205632	rs9364995	C	T	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	159205668	rs3103003	G	A	7836.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr6	159210662	rs140055516	TTTTC	T	2772.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.01;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	159291490	rs6455609	G	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	159590734	rs295332	T	C	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	159652931	rs420137	G	C	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	159653635	rs381639	C	G	16778.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr6	159654487	rs404435	G	T	22068.77	.	AC=2;AF=1.00;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	1/1:0,830:1.00:830
chr6	159654551	rs370434	C	G	26183.77	.	AC=2;AF=1.00;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	1/1:0,1000:1.00:1000
chr6	159654994	rs402388	A	C	6533.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr6	159655084	rs420054	C	G	7088.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.71;ReadPosRankSum=-0.467;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:12,287:0.96:299
chr6	159655102	rs436743	A	G	9193.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr6	159655326	rs3003174	T	C	16565.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,615:1.00:615
chr6	159655383	rs2501176	A	G	48029.77	.	AC=2;AF=1.00;AN=2;DB;DP=1097;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,1083:1.00:1083
chr6	159655402	rs2932988	A	G	51262.77	.	AC=2;AF=1.00;AN=2;DB;DP=1255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.31;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,1241:1.00:1241
chr6	159655593	rs2501177	C	T	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	159657195	rs420339	G	T	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.40;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	159659481	rs419836	C	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	159659523	rs450538	A	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	159660779	rs141435210	GCCACCACCCGCCGCACGA	G	6016.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	159660879	rs386360	C	A	10316.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=26.18;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,394:1.00:394
chr6	159669953	rs28487880	G	C	1290.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	159670276	rs294907	A	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	159670303	rs294906	G	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	159672455	rs294899	C	T	13111.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:2,511:1.00:513
chr6	159677498	rs294890	C	T	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	159682206	rs294883	C	T	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	159692321	rs409691	G	A	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	159692559	rs455162	G	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	160106088	rs2758332	C	A	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.62;SOR=1.591;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	160106125	rs2855116	A	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	160109051	rs2070994	A	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.66;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	160113872	rs4880	A	G	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	160114360	.	GC	G	1050.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.533;QD=20.60;ReadPosRankSum=-1.281;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:5,46:0.90:51
chr6	160133957	rs752779	G	A	6556.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr6	160148406	.	T	TGGCAGGAGGCGGGAGGCGGGA	5132.73	.	AC=2;AF=1.00;AN=2;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.67;QD=34.45;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	160174456	rs1440	T	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	160182749	rs2277073	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	160182845	rs2277072	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	160183325	rs2273819	G	C	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	160196343	rs25683	A	G	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	160198395	rs3465	G	A	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	160199454	.	TTTAAAAAAAAAA	T,TAAAAAA	100.14	.	AC=2,0;AF=1.00,0.00;AN=2;DP=8;set=Intersection	GT:AF:DP	1/1:1.00:3
chr6	160199687	rs15982	T	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	160201295	rs2295901	C	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	160201677	rs3818300	G	A	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	160202167	rs2295899	G	A	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	160205991	rs1547093	C	A	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	160206631	rs3818299	T	C	6278.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr6	160207049	rs2273828	T	C	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr6	160211485	rs2273823	T	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	160211554	rs1128661	T	G	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	160211636	rs1128670	G	A	9237.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr6	160211645	rs58504486	GGTT	G	15572.73	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr6	160211697	rs9346795	C	T	17049.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=44.63;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr6	160211700	rs9355278	C	G	17024.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=44.92;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr6	160212268	rs4709371	G	A	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	160221279	rs71927633	GCGTGGGCAGCA	G	2678.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	160221475	rs733319	A	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	160221560	rs12211823	G	A	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	160224346	rs2146163	T	C	7825.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr6	160225559	rs9364536	G	C	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	160226923	rs6910976	A	G	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr6	160229867	rs41267787	C	T	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	160231215	rs73026894	T	C	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	160234625	rs13220869	G	C	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr6	160237190	.	C	CA	1363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.211;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=5.366;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.429;QD=35.89;ReadPosRankSum=1.983;SOR=3.442;set=HC	GT:AD:AF:DP	0/1:4,34:0.89:38
chr6	160237192	.	C	G	877	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=6;HapScore=1;MGOF=49;MMLQ=23;MQ=57.49;NF=0;NR=23;PP=877;QD=39.6422266325;SC=TCCCCACCCCCCCACACCCCT;SbPval=1.0;Source=Platypus;TC=28;TCF=2;TCR=26;TR=23;WE=160237200;WS=160237178;set=Platypus	GT:AD:AF:DP	1/0:5,23:0.82:28
chr6	160237192	.	C	CCG	1363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=5.366;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.429;QD=35.89;ReadPosRankSum=1.267;SOR=3.442;set=HC	GT:AD:AF:DP	0/1:4,34:0.89:38
chr6	160239835	rs9347350	T	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	160241440	rs7775650	G	C	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	160328620	rs220721	C	T	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	160390241	rs8191692	T	C	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	160465486	rs66749494	TTGTC	T	791.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	160492796	.	T	A	1140.77	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	160494409	rs629849	A	G	15704.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,619:1.00:619
chr6	160505199	rs614754	C	G	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	160543562	rs461473	G	A	232.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	160551204	rs683369	G	C	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr6	160560845	rs628031	A	G	8124.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:2,327:0.99:329
chr6	160560897	rs113569197	CTGGTAAGT	C	6950.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	160575985	rs2297374	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	160645832	rs316003	C	T	10964.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:2,438:1.00:440
chr6	160645921	rs3219197	C	CT	1289.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr6	160663230	rs17588242	T	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	160666660	rs11422119	A	AC	3075.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	160666726	rs11422120	A	AT	241.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.103;MLEAC=2;MLEAF=1.000;MQ=59.21;MQRankSum=-0.597;QD=10.99;ReadPosRankSum=-2.428;SOR=0.317;set=HC	GT:AD:AF:DP	1/1:4,18:0.82:22
chr6	160670282	rs316019	A	C	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	160670494	rs316018	A	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	160670533	rs316017	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	160671500	rs316016	T	C	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	160677614	rs2774230	G	C	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	160679400	rs624249	C	A	12362.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr6	160769423	rs555754	G	A	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	160769811	rs668871	C	T	16830.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,664:1.00:664
chr6	160969629	rs1801693	A	G	3484.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.171;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.07;MQRankSum=-0.283;QD=25.25;ReadPosRankSum=1.107;SOR=0.254;set=HC	GT:AD:AF:DP	1/1:1,137:0.99:138
chr6	161007360	rs9365178	C	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	161007496	rs7765781	G	C	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	161007538	rs7765803	G	C	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	161010766	rs7453899	A	T	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	161136058	rs4252105	T	A	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	161137779	rs14224	T	C	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	161139480	rs1130656	C	T	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	161139502	rs2295368	G	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	161160083	rs2859879	G	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	161173946	rs11060	T	G	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.67;QD=25.41;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	161469455	rs9346846	T	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	161469774	rs4559074	G	A	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr6	161502094	rs9347479	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	161509003	rs9355332	T	A	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	161517964	rs2177587	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	161519350	.	CCTGCTG	C,CCTG	8421.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=419;set=Intersection	GT:AF:DP	1/2:0.10,0.89:344
chr6	161531006	rs4709493	G	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	161532855	rs35961625	CT	C	11943.73	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=28.04;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,426:1.00:426
chr6	161557703	rs6455706	A	G	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	161807855	rs1801582	C	G	11358.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr6	161970057	rs200796582	T	C	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr6	161970150	rs71694927	ATGTG	A	980.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr6	161990483	rs3765474	C	T	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	161990516	rs3765475	G	C	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	162394175	rs146563707	G	A	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	162475283	rs41268561	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	162622304	rs4709583	A	G	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	162864317	rs2075923	A	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	162992294	rs4709639	T	A	209.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	162992355	rs67519540	CAA	C	154.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	163149497	rs2276201	T	C	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	163587146	rs1124951	C	G	5948.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	163587312	rs3064931	CAAA	C	8447.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.00;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	163600225	rs742956	C	A	6902.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	163611793	rs6907521	C	T	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	163612783	rs6937392	C	A	26083.77	.	AC=2;AF=1.00;AN=2;DB;DP=1016;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,1005:1.00:1005
chr6	163836376	rs2757578	C	T	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr6	163837086	.	TGGGGG	T	2441.73	.	AC=2;AF=1.00;AN=2;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=43.60;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	163991700	rs112825267	G	GT	9303.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.744;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=2.978;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.05;ReadPosRankSum=0.016;SOR=0.151;set=HC	GT:AD:AF:DP	1/1:2,420:1.00:422
chr6	164892060	rs200184425	CCCTT	C	224.90	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=37.48;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	164962906	rs141835494	CTTCTTTCTTTCCTCT	C	279.76	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	165693624	rs1413100	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	165694945	rs1333501	C	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	165827194	rs220749	A	G	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr6	165862295	rs2274577	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	165863695	rs57550533	C	CA	5876.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	165989776	rs1410479	C	T	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	165989849	rs73022128	T	C	8870.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr6	166075362	rs6456003	G	T	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	166308198	rs9364825	A	G	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	166401464	.	CGTGT	C,CGT	2811.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.85;QD=32.32;SOR=1.429;set=HC	GT:AD:AF:DP	1/2:0,16,71:0.18,0.82:87
chr6	166401512	rs697475	T	A	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	166720806	rs911203	G	C	10634.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr6	166721211	rs13204594	G	T	3535.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.463;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.90;ReadPosRankSum=1.924;SOR=0.241;set=HC	GT:AD:AF:DP	1/1:1,141:0.99:142
chr6	166721224	rs7757150	C	G	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	166721424	rs13205770	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	166736235	rs35147403	CA	C	195.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.79;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	166737980	rs4710041	G	A	11376.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr6	166739684	rs10806847	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	166741921	rs9459653	T	A	271.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	166743760	rs9348119	G	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	166755975	rs10862	T	C	27996.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,624:1.00:624
chr6	166755979	rs11168	A	C	28059.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,636:1.00:636
chr6	166796433	rs1546854	C	A	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr6	166826255	rs909631	G	A	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	166826304	rs760670	T	C	10155.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr6	166827436	rs2235295	T	C	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr6	166831694	rs10946164	C	T	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	166862136	rs7746519	G	A	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	166952264	rs1003857	G	A	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	167040311	rs10946178	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	167040463	rs10946179	A	G	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr6	167271711	rs943687	T	C	18028.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr6	167271716	rs9347162	T	C	17842.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr6	167411287	.	A	G	2612	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=1;MGOF=53;MMLQ=26;MQ=58.46;NF=65;NR=22;PP=2612;QD=20;SC=TCACAGACAGAAACACAGAGA;SbPval=0.77;Source=Platypus;TC=103;TCF=72;TCR=31;TR=87;WE=167411309;WS=167411277;set=Platypus	GT:AD:AF:DP	0/1:16,87:0.84:103
chr6	167411388	rs73024234	C	G	2586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=16.205;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.792;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:326,92:0.22:418
chr6	167411401	rs73024236	C	T	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=17.710;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-4.534;SOR=1.792;set=HC	GT:AD:AF:DP	0/1:347,80:0.19:427
chr6	167413132	rs34729961	GC	G	175.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	167413539	rs12212247	T	C	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	167424293	rs1322077	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	167435798	rs141889698	C	CACAA	1120.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	167436159	rs3752520	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	167440128	rs2282861	C	T	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	167440244	rs2282860	T	C	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	167453519	rs368396376	A	AT	1228.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:30,84:0.74:114
chr6	167550195	rs41510645	A	G	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	167571048	rs6902566	T	C	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	167584076	.	C	T	1409.77	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	167584353	rs201194115	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.64;QD=28.32;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	167590454	rs71571482	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.05;QD=25.74;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	167590541	rs3737098	G	A	7487.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.12;QD=24.79;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	167590574	rs2989541	G	C	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.68;QD=25.75;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	167592464	rs60509455	A	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	167592656	rs4710193	G	C	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	167595183	rs377058325	T	C	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.49;QD=27.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	167595449	rs139049693	A	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.84;QD=27.99;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	167622070	rs671511	C	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.90;QD=22.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	167622105	rs28661326	A	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.10;QD=25.11;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	167622205	rs28588506	G	A	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.14;QD=26.25;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	167622284	rs35304076	C	T	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:14,159:0.92:173
chr6	167622347	rs9459922	A	C	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.47;QD=25.74;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	167622389	rs6931756	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.34;QD=25.53;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	167622419	rs6936429	T	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	167704944	rs2076005	T	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	167711243	rs1555032	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	167711418	rs1555033	A	G	7851.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr6	167728774	rs663606	T	C	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.78;QD=27.13;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	167728791	rs7739897	G	A	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.674;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=49.46;MQRankSum=-2.087;QD=19.25;ReadPosRankSum=4.755;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:17,82:0.83:99
chr6	167738595	rs41266329	G	A	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	167738723	rs55788158	C	T	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr6	167754661	rs909545	A	G	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr6	167754702	rs909546	C	T	7136.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	167754721	rs9457304	G	A	6972.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.766;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.141;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=1.388;SOR=0.331;set=HC	GT:AD:AF:DP	1/1:1,269:1.00:270
chr6	167786551	rs146852129	T	G	211.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr6	167786574	rs201593561	A	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr6	167786961	rs151165498	G	T	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.75;QD=43.92;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	167786961	.	GGC	TGT	1372	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=24;MQ=45.58;NF=7;NR=27;PP=1372;QD=41.9255257312;SC=TAAGTCAGTGGGCGCGGCTGA;SbPval=0.55;Source=Platypus;TC=39;TCF=8;TCR=31;TR=34;WE=167786971;WS=167786951;set=Platypus	GT:AD:AF:DP	0/1:5,34:0.87:39
chr6	167786963	rs201342351	C	T	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.77;QD=44.81;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	167789615	rs58620632	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	167791524	rs17855200	C	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.57;QD=33.89;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	167791530	rs17855837	G	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.44;QD=53.28;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	167791549	rs3010594	T	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.82;QD=22.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	167796186	rs6911999	G	A	128.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	167796415	rs9457321	A	C	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.50;QD=26.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	167797844	rs75736096	C	T	6556.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr6	167797869	rs77067665	C	G	7006.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr6	167907609	.	T	TAC	421.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.17;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	167907677	.	T	TAC,TACAC	1656.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=4.312;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;MQRankSum=-1.424;QD=23.01;ReadPosRankSum=0.266;SOR=1.193;set=HC	GT:AD:AF:DP	1/2:5,17,50:0.24,0.69:72
chr6	168060277	.	TAC	T	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=2.201;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:91,14:0.13:105
chr6	168228026	rs201871553	T	TC	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.29;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	168265102	rs2301530	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	168347291	rs147864978	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	168457801	rs3734898	A	G	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	168457966	rs3734899	G	A	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr6	168458074	rs3734900	G	A	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	168459790	rs1465182	G	T	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	168459792	rs2269680	G	A	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	168459845	rs1548349	G	C	5166.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr6	168462765	rs3823460	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	168467737	rs3816861	G	A	14654.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=2.366;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:2,569:1.00:571
chr6	168468186	rs6906979	G	T	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	168475764	rs9364396	G	T	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	168475822	rs3816859	A	G	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	168476198	rs2306943	A	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	168476571	.	C	T	931	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=3;HapScore=1;MGOF=4;MMLQ=23;MQ=59.26;NF=5;NR=35;PP=931;QD=24.1442803137;SC=ACATTTCCGGCGTCCCGTGTC;SbPval=0.53;Source=Platypus;TC=41;TCF=5;TCR=36;TR=40;WE=168476591;WS=168476561;set=Platypus	GT:AD:AF:DP	1/1:1,40:0.98:41
chr6	168476583	.	A	G	668	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=3;HapScore=1;MGOF=4;MMLQ=23;MQ=59.04;NF=2;NR=26;PP=668;QD=25.0989718767;SC=TCCCGTGTCCACATTTCCGGT;SbPval=0.57;Source=Platypus;TC=29;TCF=2;TCR=27;TR=28;WE=168476591;WS=168476561;set=Platypus	GT:AD:AF:DP	1/1:1,28:0.97:29
chr6	168479604	rs34054991	G	A	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr6	168479790	rs11750985	C	T	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr6	168482110	rs4708429	C	T	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	168482329	rs4708430	C	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	168694594	rs7764061	C	T	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	168694788	rs56060091	C	G	4550.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	168695255	rs71777643	GTGTATATA	GTA,G	191.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	0/1:0.48:23
chr6	168695309	rs4708710	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	168695345	rs4708711	G	A	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	168719924	rs4292501	C	T	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.51;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	168720359	rs9364433	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	168928225	rs2224209	G	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	168928251	rs2609287	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	168928519	rs2609286	C	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	169008822	rs3832407	TC	T	25843.73	.	AC=2;AF=1.00;AN=2;DB;DP=846;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=31.21;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,828:1.00:828
chr6	169055994	rs146938095	G	A	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	169115507	rs79941498	A	G	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	169617840	rs12435	A	G	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=24.48;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	169617934	rs58423957	GA	G	1122.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.017;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.283;QD=18.71;ReadPosRankSum=-0.867;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:1,59:0.98:60
chr6	169619687	rs9800623	G	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	169619933	rs113367461	T	TTTCCTTCC	5444.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.19;QD=44.27;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	169620247	rs9393165	T	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	169620450	rs140725844	AAAG	A	3491.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=42.58;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	169620541	rs36045897	G	A	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	169621536	rs1132742	A	G	8007.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.979;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=3.162;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.95;ReadPosRankSum=1.844;SOR=0.344;set=HC	GT:AD:AF:DP	1/1:1,320:1.00:321
chr6	169622490	rs9505895	G	A	13252.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr6	169622638	rs59244158	C	A	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	169641971	rs61730651	C	T	8598.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr6	169646199	rs73046008	A	C	12932.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=26.67;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr6	169646409	rs73046010	A	G	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	169648767	rs12178180	G	A	10529.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr6	170118085	rs7760142	C	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	170594819	rs2255020	T	C	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	170595430	rs2747757	G	C	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	170597276	rs2738822	C	T	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	170598227	rs2747756	T	G	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	170598352	rs2738821	C	T	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	170598368	rs67433119	TCTC	T	5327.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	170627651	rs9460113	G	A	24880.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.795;ClippingRankSum=0.000;DB;DP=1015;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;MQRankSum=-0.252;QD=25.16;ReadPosRankSum=-0.004;SOR=0.369;set=HC	GT:AD:AF:DP	1/1:8,981:0.99:989
chr6	170704444	rs7738466	C	A	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	170871013	.	A	ACAG	2989	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=26;MQ=59.05;NF=14;NR=66;PP=2989;QD=20;SC=AGCAACAACAACAGCAGCAGC;SbPval=0.47;Source=Platypus;TC=143;TCF=24;TCR=119;TR=80;WE=170871021;WS=170870994;set=Platypus	GT:AD:AF:DP	0/1:63,80:0.56:143
chr6	170871037	rs71815788	GCAA	G	3740.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.690;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=3.030;QD=18.25;ReadPosRankSum=2.778;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:37,168:0.82:205
chr6	170871049	.	G	GCAA	2641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0.000;DP=497;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=2.689;QD=11.74;ReadPosRankSum=4.627;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:81,144:0.64:225
chr6	170878886	rs2235506	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	170881389	.	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DP=413;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.992;QD=0.25;ReadPosRankSum=-0.556;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:287,64:0.18:351
chr6	170893718	.	C	A	40.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=0.366;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr6	170893719	.	G	A	40.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=0.712;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr7	286402	rs141256626	A	G	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=1.466;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:318,99:0.24:417
chr7	286468	.	G	GGACAGGTGAGCCCTTCCTTCCTCCCTCCATCCGC	665.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=10.877;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-1.995;QD=12.56;ReadPosRankSum=0.476;SOR=2.472;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr7	286502	.	C	CGACAGGTGAGCCCTTCCTTCCTCCCTCCATCCGT	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.867;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=7.052;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=3.138;QD=7.98;ReadPosRankSum=4.897;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr7	286532	rs143589297	T	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=61.75;MQRankSum=2.631;QD=8.26;ReadPosRankSum=0.708;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr7	286534	rs146778412	A	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.75;QD=36.07;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	288169	rs148750123	G	C	2731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=5.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-0.731;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:138,75:0.35:213
chr7	288174	rs142310673	G	C	2864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=2.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.197;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:174,86:0.33:260
chr7	295683	rs36173688	T	TG	2099.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:25,73:0.74:98
chr7	296557	rs36164325	T	C	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:55,116:0.68:171
chr7	296739	rs36156504	G	A	14241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=977;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=2.227;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:305,662:0.68:967
chr7	299558	.	T	TTCTC	2756.73	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:28,69:0.71:97
chr7	299642	rs36156024	G	A	8811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.867;QD=15.74;ReadPosRankSum=-0.285;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:152,408:0.73:560
chr7	299850	rs36170987	G	T	9605.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:210,446:0.68:656
chr7	299881	rs36139924	A	G	11135.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:195,516:0.73:711
chr7	299976	rs36173075	G	A	8335.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:74,222:0.75:296
chr7	299987	rs36138803	C	G	7569.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:62,184:0.75:246
chr7	330822	rs36180337	A	C	4594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=1061;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-1.953;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:721,306:0.30:1027
chr7	330882	rs4077171	T	G	2818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.390;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=7.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=1.649;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:220,84:0.28:304
chr7	330884	rs4077172	A	G	2818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.355;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=6.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=1.247;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:210,83:0.28:293
chr7	538277	rs34223855	G	C	21362.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.39;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr7	538284	rs35782510	T	C	20224.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr7	538348	rs12720025	A	T	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	540518	rs2070958	T	C	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	550399	rs192632660	A	G	999.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.750;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.33;ReadPosRankSum=-0.352;SOR=3.981;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr7	550409	rs183980841	G	A	968.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=14.865;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.36;ReadPosRankSum=2.079;SOR=5.353;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr7	550737	rs62433334	G	C	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	551946	rs9692018	T	C	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	559551	.	GCC	G	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=6.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.56;ReadPosRankSum=0.381;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	559649	rs143598722	C	T	4264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=850;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-1.714;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:556,268:0.33:824
chr7	618855	rs62431411	T	C	4504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=1060;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-1.937;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:761,297:0.28:1058
chr7	618869	rs62431412	G	A	5786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=1247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-2.306;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:874,371:0.30:1245
chr7	618938	rs3211362	A	G	6637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=1622;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=1.815;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:1163,453:0.28:1616
chr7	624221	rs9330368	T	G	8280.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:135,384:0.74:519
chr7	624344	rs9330367	C	T	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:64,129:0.67:193
chr7	624366	rs13221342	G	A	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:40,84:0.68:124
chr7	624401	rs9330366	C	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr7	720119	rs79037648	C	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr7	766214	rs150662951	G	GACGAT	345.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr7	766220	rs79984239	A	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr7	766982	rs116986757	C	A	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-2.148;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:78,39:0.33:117
chr7	772025	rs4072597	G	A	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr7	772174	rs4724987	G	A	19502.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	1/1:0,757:1.00:757
chr7	780687	rs62432212	T	C	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr7	780859	rs6943174	T	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr7	780980	rs6943337	T	G	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	794471	rs34761279	A	G	7150.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	794576	rs62432239	C	T	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	796430	rs73036225	C	T	3296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.448;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-2.471;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:540,209:0.28:749
chr7	801634	rs142752861	T	TTGAGCCCCAGGCCTCAAACATGTC	3832.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;QD=44.05;SOR=1.836;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	803342	rs4495324	G	A	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:48,118:0.71:166
chr7	808588	rs6973614	C	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:9,48:0.84:57
chr7	808810	rs6946758	C	G	20707.77	.	AC=1;AF=0.500;AN=2;DB;DP=1421;set=Intersection	GT:AD:AF:DP	0/1:431,965:0.69:1396
chr7	810219	rs4720951	T	C	18259.77	.	AC=1;AF=0.500;AN=2;DB;DP=1189;set=Intersection	GT:AD:AF:DP	0/1:319,858:0.73:1177
chr7	813618	rs4719279	T	C	39793.77	.	AC=2;AF=1.00;AN=2;DB;DP=1507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,1495:1.00:1495
chr7	813650	rs62432869	G	A	31699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DB;DP=2209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=2.394;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:691,1489:0.68:2180
chr7	813867	rs6973746	C	G	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	814612	rs34943122	G	A	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:45,85:0.65:130
chr7	814788	rs3922641	G	A	6350.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:156,297:0.66:453
chr7	821798	rs4374882	C	T,CGTGGCCGCCTCCCGACACGCGGCGTCAGAAACTCGGATCTTCCTGGCGTGGCCGCCTCCCGTCGCGCAGCGTCAGAAACTCGGATCTTCGT	22899.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=3.188;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.80;MQRankSum=-0.246;QD=915.99;ReadPosRankSum=-0.227;SOR=0.477;set=HC	GT:AD:AF:DP	1/2:1,11,13:0.44,0.52:25
chr7	822523	rs4719314	A	G	38768.77	.	AC=2;AF=1.00;AN=2;DB;DP=1639;set=Intersection	GT:AD:AF:DP	1/1:116,1496:0.93:1612
chr7	825114	rs67721251	T	C	16317.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,618:1.00:618
chr7	855835	.	G	GTGCAGACCCCTCCGCGA	3587.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.321;QD=21.23;ReadPosRankSum=2.366;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:79,90:0.53:169
chr7	855861	rs111652739	C	T	2240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.980;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.642;QD=15.35;ReadPosRankSum=1.266;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:84,62:0.42:146
chr7	856320	rs6959154	C	T	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=0.013;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:33,58:0.64:91
chr7	857352	rs4275123	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	882829	rs34925195	GT	G	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=1.111;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr7	883105	rs113652875	C	T	16084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=1083;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=0.992;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:321,750:0.70:1071
chr7	888290	rs75133066	A	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr7	889169	rs74742245	A	G	14788.77	.	AC=1;AF=0.500;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	0/1:261,687:0.72:948
chr7	891184	rs10628483	C	CGAT	7534.73	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:72,186:0.72:258
chr7	892902	rs4076072	C	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr7	897492	rs10950789	A	G	14626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=-0.166;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:200,371:0.65:571
chr7	897496	rs59910530	G	A	14479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=-0.769;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:193,363:0.65:556
chr7	905418	rs4721949	T	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr7	905786	rs4721952	A	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr7	912755	rs4722034	C	T	3052.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:70,145:0.67:215
chr7	926827	rs4722203	T	C	30823.77	.	AC=2;AF=1.00;AN=2;DB;DP=1195;set=Intersection	GT:AD:AF:DP	1/1:0,1175:1.00:1175
chr7	930689	rs13171	C	T	5516.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:74,241:0.77:315
chr7	930780	rs11764234	C	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr7	933234	rs35157448	T	A	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr7	933240	rs34784960	C	CGGT	2077.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr7	939007	rs79698027	C	G	3916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=965;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=2.135;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:679,262:0.28:941
chr7	939638	rs3779612	T	C	10604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.852;ClippingRankSum=0.000;DB;DP=735;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-2.837;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:210,493:0.70:703
chr7	940181	rs10256887	C	T	7077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.477;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.500;MQ=61.68;MQRankSum=6.582;QD=14.59;ReadPosRankSum=0.371;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:156,329:0.68:485
chr7	940257	rs199900149	G	GGGGCAAAGGC	6285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.500;MQ=62.40;MQRankSum=4.806;QD=15.95;ReadPosRankSum=0.277;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:132,262:0.66:394
chr7	940267	rs3824079	T	C	12212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=61.49;MQRankSum=5.491;QD=28.40;ReadPosRankSum=-1.726;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:130,300:0.70:430
chr7	940296	.	A	AGG	4888.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.52;ReadPosRankSum=0.150;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:82,182:0.69:264
chr7	940298	.	C	CTGGGGTCCCCACAGAGGG	4988.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=3.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.04;ReadPosRankSum=-0.817;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:80,182:0.69:262
chr7	940518	.	GAA	G	2122.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.735;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=20.22;ReadPosRankSum=2.173;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:50,55:0.52:105
chr7	940520	.	A	AGGCC	2897.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=24.15;ReadPosRankSum=2.037;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:50,70:0.58:120
chr7	943685	rs74656328	A	G	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=3.108;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr7	943711	rs10282526	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr7	943868	rs61730955	G	A	5077.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:114,245:0.68:359
chr7	943950	rs73672461	G	A	3579.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:82,170:0.67:252
chr7	944055	rs73672462	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr7	944683	rs1881121	C	T	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:106,248:0.70:354
chr7	944874	rs10243781	G	A	4400.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:93,200:0.68:293
chr7	944909	rs60530181	C	CG	2279.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:146,70:0.32:216
chr7	944929	rs28533260	C	G	2211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=1.767;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:126,60:0.32:186
chr7	944935	rs372870944	CAG	C	2153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=1.565;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:117,57:0.33:174
chr7	944937	.	G	GGGAGA	2966	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=4;HapScore=1;MGOF=28;MMLQ=24;MQ=60.0;NF=2;NR=39;PP=2966;QD=20;SC=GACACGGACAGGGGGAGACGG;SbPval=0.51;Source=Platypus;TC=72;TCF=3;TCR=69;TR=41;WE=944956;WS=944899;set=Platypus	GT:AD:AF:DP	0/1:31,41:0.57:72
chr7	944944	.	A	AG	2021.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.030;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=1.483;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:107,54:0.34:161
chr7	944945	.	C	G	2030.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.639;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=1.297;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:107,54:0.34:161
chr7	944947	.	GAC	G	2969	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=1;MGOF=28;MMLQ=24;MQ=60.0;NF=2;NR=36;PP=2969;QD=20;SC=GGGGGAGACGGACGGGGAGAG;SbPval=0.54;Source=Platypus;TC=62;TCF=3;TCR=59;TR=38;WE=944956;WS=944899;set=Platypus	GT:AD:AF:DP	0/1:24,38:0.61:62
chr7	944949	.	C	CACGG	1919.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.874;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=1.338;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:102,52:0.34:154
chr7	944993	.	CAGGGAAAGGGAA	C	1045.73	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr7	959475	.	G	GGGGGGAGGGAGGGAAAGAGAT	232.82	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=77.61;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	960642	rs34217249	G	A	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.267;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:311,119:0.28:430
chr7	960705	rs10250309	T	C	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	1062527	rs3735686	G	A	20342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=1286;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=-0.521;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:331,948:0.74:1279
chr7	1097023	rs78351779	G	C	3162.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:68,138:0.67:206
chr7	1097183	rs11761941	G	A	10140.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:185,458:0.71:643
chr7	1097394	rs11767527	T	C	10931.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:241,516:0.68:757
chr7	1097895	rs61910751	A	G	14458.77	.	AC=1;AF=0.500;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	0/1:280,675:0.71:955
chr7	1131356	rs3802141	T	C	18632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DB;DP=1236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=1.571;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:354,872:0.71:1226
chr7	1131411	rs11544331	C	T	26758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=1803;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-0.293;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:539,1242:0.70:1781
chr7	1132153	rs3808352	G	A	17376.77	.	AC=1;AF=0.500;AN=2;DB;DP=1141;set=Intersection	GT:AD:AF:DP	0/1:341,787:0.70:1128
chr7	1132456	rs10246354	C	T	18410.77	.	AC=1;AF=0.500;AN=2;DB;DP=1190;set=Intersection	GT:AD:AF:DP	0/1:362,816:0.69:1178
chr7	1132505	rs2070118	G	A	16512.77	.	AC=1;AF=0.500;AN=2;DB;DP=1107;set=Intersection	GT:AD:AF:DP	0/1:346,750:0.68:1096
chr7	1133305	rs1133043	C	G	12141.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:213,568:0.73:781
chr7	1192572	rs1133122	C	A	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:103,161:0.61:264
chr7	1195215	rs1133116	A	C	5574.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:111,255:0.70:366
chr7	1195293	rs143202029	T	TC	3818.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:52,127:0.71:179
chr7	1197736	rs28685743	C	T	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:82,144:0.64:226
chr7	1197994	rs12702435	T	C	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:73,176:0.71:249
chr7	1474621	rs145154210	GC	G	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=30.425;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.047;QD=2.18;ReadPosRankSum=1.091;SOR=1.411;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr7	1481919	rs4236408	C	A	38001.77	.	AC=2;AF=1.00;AN=2;DB;DP=1464;set=Intersection	GT:AD:AF:DP	1/1:2,1441:1.00:1443
chr7	1484572	rs10435184	A	G	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	1499089	.	C	T	658.77	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:65,35:0.35:100
chr7	1527701	.	T	C	601.77	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,34:0.31:108
chr7	1528947	.	T	TCCCGGGCCCGCCGAGGGGACGTGCGCACTCACTTCAGGCCCTGCTCCCAGC	16748.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.84;MQRankSum=0.978;QD=98.52;ReadPosRankSum=1.763;SOR=1.463;set=HC	GT:AD:AF:DP	1/1:3,167:0.98:170
chr7	1538021	rs11761394	G	A	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:49,107:0.69:156
chr7	1542732	rs202230447	C	T	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:476,210:0.31:686
chr7	1545349	.	C	G	9750.77	.	AC=1;AF=0.500;AN=2;DP=735;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:262,458:0.64:720
chr7	1590368	rs6463921	A	G	9282.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr7	1595005	rs183593116	C	T	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:166,72:0.30:238
chr7	1607630	rs62436871	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr7	1627632	rs7800178	T	C	18098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=1274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=0.711;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:397,859:0.68:1256
chr7	1703082	rs144374574	T	TG	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=1.393;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:103,26:0.20:129
chr7	1733552	.	G	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=2.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=1.852;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr7	1878377	rs3889573	A	G	12450.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr7	1888593	rs36194378	C	T	3471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=1130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.124;QD=3.09;ReadPosRankSum=2.247;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:853,269:0.24:1122
chr7	1888683	.	TAC	T	752.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DP=380;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.965;QD=3.35;ReadPosRankSum=0.413;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:175,50:0.22:225
chr7	1914140	rs112425367	T	A	2163.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:36,100:0.74:136
chr7	1914183	.	T	TA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.427;QD=0.19;ReadPosRankSum=-0.888;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:225,40:0.15:265
chr7	1976263	rs2280552	C	T	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	1976635	rs2280549	G	A	17437.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:4,643:0.99:647
chr7	2041887	rs4721296	A	C	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	2255913	.	G	C	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.279;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:247,82:0.25:329
chr7	2257824	.	G	GATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAA	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.352;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=30.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-2.914;SOR=4.890;set=HC	GT:AD:AF:DP	0/1:111,14:0.11:125
chr7	2278646	.	AT	A	65.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.238;ClippingRankSum=-0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=1.231;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr7	2278648	.	ATATATATATATAT	A	65.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.820;ClippingRankSum=-0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=1.231;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr7	2278650	rs375496122	AT	A	246.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=-0.000;QD=24.67;ReadPosRankSum=-1.440;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	2278652	.	ATATATATAT	A	246.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.363;ClippingRankSum=-0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=-0.000;QD=24.67;ReadPosRankSum=-1.213;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	2278663	rs4721496	T	A	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=41.15;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	2279851	rs6962067	T	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=27.44;SOR=1.568;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	2290314	rs12699806	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.74;MQRankSum=1.159;QD=13.10;ReadPosRankSum=-1.769;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr7	2290317	rs60298419	T	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=53.00;MQRankSum=1.317;QD=13.86;ReadPosRankSum=-1.968;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr7	2290319	rs373496719	TC	T	526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=54.24;MQRankSum=0.759;QD=15.96;ReadPosRankSum=-1.639;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr7	2290328	rs10230814	C	T	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.16;MQRankSum=1.267;QD=17.92;ReadPosRankSum=-2.241;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr7	2290336	rs10249180	T	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=1.347;QD=13.06;ReadPosRankSum=-0.704;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr7	2290372	rs10230822	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,45:0.45:101
chr7	2290433	rs10230928	C	T	3156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-2.149;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:105,149:0.59:254
chr7	2290522	rs1799832	C	T	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.950;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:314,164:0.34:478
chr7	2290685	rs1062492	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr7	2290781	.	G	GTTT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.09;ReadPosRankSum=-0.439;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr7	2292881	rs3075440	C	CTG	16006.73	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr7	2296493	rs2302070	A	G	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	2296696	rs2302071	C	A	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-1.926;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:29,58:0.67:87
chr7	2296722	rs3815313	A	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr7	2297006	rs6888	A	G	8037.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr7	2297212	rs62442513	C	T	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:79,80:0.50:159
chr7	2303986	rs2286206	T	C	14280.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr7	2304191	rs2286205	A	C	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	2309355	rs6947645	G	A	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:37,106:0.74:143
chr7	2315008	rs2398667	G	C	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	2349470	rs10479970	T	C	2584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.825;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.406;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:529,176:0.25:705
chr7	2349608	rs7805462	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr7	2394428	rs112294325	C	CGCG	610.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr7	2394746	rs9690787	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	2394991	rs11551167	C	T	5306.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:102,251:0.71:353
chr7	2400306	rs953770	T	C	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.252;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:155,55:0.26:210
chr7	2405885	rs2286204	C	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,16:0.26:62
chr7	2409035	rs2301944	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr7	2414142	rs886632	A	G	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.452;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:311,130:0.29:441
chr7	2414365	rs884565	A	G	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.440;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:266,98:0.27:364
chr7	2416822	rs2240347	A	G	3217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=0.498;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:397,188:0.32:585
chr7	2418645	rs6461351	A	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.228;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.437;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:51,19:0.27:70
chr7	2419285	.	A	T	495.77	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,29:0.30:97
chr7	2420127	rs188112322	C	T	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:258,111:0.30:369
chr7	2434522	rs1978169	G	A	20558.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,789:1.00:789
chr7	2434594	.	ATT	A,AT	1046.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=2.815;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;MQRankSum=1.133;QD=10.16;ReadPosRankSum=0.053;SOR=1.309;set=HC	GT:AD:AF:DP	1/2:17,42,44:0.41,0.43:103
chr7	2515382	rs5881927	G	GC	19477.73	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr7	2515613	rs144605099	G	A	6002.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:218,290:0.57:508
chr7	2517113	rs75052760	C	A	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr7	2552881	rs34637446	A	AGATG	2612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.073;QD=4.95;ReadPosRankSum=1.008;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:362,166:0.31:528
chr7	2552986	rs286560	A	C	4313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-2.065;QD=12.22;ReadPosRankSum=-0.721;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:146,207:0.59:353
chr7	2557266	rs755179	T	C	2544.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:102,124:0.55:226
chr7	2565268	rs893239	C	A	6288.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:213,294:0.58:507
chr7	2578246	rs2917726	C	T	6061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=790;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-1.632;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:455,321:0.41:776
chr7	2582153	rs138295649	C	CCCCCAGCCTCCCGGGTGT	14349.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	2598757	rs6963930	T	C	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.66;ReadPosRankSum=0.460;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:29,99:0.77:128
chr7	2604767	rs71550361	AGT	A	2409.73	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:275,165:0.38:440
chr7	2604890	rs10156198	C	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:358,117:0.25:475
chr7	2611878	rs2917751	T	C	18584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=1246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=-1.666;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:358,869:0.71:1227
chr7	2613042	rs2304540	G	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:18,90:0.83:108
chr7	2618070	rs3214664	C	CA	24660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=1075;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.641;QD=23.22;ReadPosRankSum=2.451;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:308,754:0.71:1062
chr7	2619334	.	GGTGT	G,GGT	6127.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DP=545;ExcessHet=3.0103;FS=2.773;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;MQRankSum=0.000;QD=18.68;ReadPosRankSum=-2.514;SOR=0.515;set=HC	GT:AD:AF:DP	1/2:49,67,212:0.20,0.65:328
chr7	2619363	rs2917739	G	C	6734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.24;ReadPosRankSum=-1.977;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:80,270:0.77:350
chr7	2619381	.	A	AT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=1.264;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:132,29:0.18:161
chr7	2621567	rs7798469	T	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr7	2623351	rs13242369	G	A	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:67,163:0.71:230
chr7	2623801	rs73033665	G	T	8399.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:175,387:0.69:562
chr7	2626038	rs3217437	CCAGGGAATGG	C	693.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr7	2627310	rs2917733	T	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:37,81:0.69:118
chr7	2627578	rs150431779	CAG	C	3370.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:45,86:0.66:131
chr7	2632477	rs2917730	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr7	2636689	rs12700146	C	T	4405.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:81,205:0.72:286
chr7	2638347	rs12700147	C	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr7	2640985	rs4506100	G	C	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:28,110:0.80:138
chr7	2641059	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.204;QD=0.42;ReadPosRankSum=-0.684;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:108,21:0.16:129
chr7	2647048	rs12700160	C	G	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:10,55:0.85:65
chr7	2685301	.	G	C	1262.77	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:89,61:0.41:150
chr7	2686761	rs3801079	G	C	7059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-1.528;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:239,333:0.58:572
chr7	2689472	rs3801077	A	C	10737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=949;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.284;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:413,527:0.56:940
chr7	2691610	rs13225657	G	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr7	2691736	rs35868808	A	G	3730.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:126,183:0.59:309
chr7	2692806	rs6461505	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr7	2699524	rs139527284	ACT	A	1312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.015;ClippingRankSum=0.000;DB;DP=1064;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.092;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:793,199:0.20:992
chr7	2699687	rs56409742	C	CG	21621.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.226;QD=26.40;ReadPosRankSum=-0.010;SOR=0.580;set=HC	GT:AD:AF:DP	1/1:3,816:1.00:819
chr7	2773035	rs34004158	C	CAT	3680.73	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:170,102:0.38:272
chr7	2802173	rs17132665	T	C	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:399,169:0.30:568
chr7	2834869	rs2533886	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr7	2854010	rs2644275	G	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.015;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:115,30:0.21:145
chr7	2952886	rs1626708	C	T	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:352,165:0.32:517
chr7	2954801	rs1182157	T	C	6550.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr7	2962753	rs2527509	G	A	6934.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:1,268:1.00:269
chr7	2966445	rs1182136	T	G	3855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=966;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.456;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:668,266:0.28:934
chr7	2968361	rs2527506	G	A	5361.77	.	AC=1;AF=0.500;AN=2;DB;DP=1185;set=Intersection	GT:AD:AF:DP	0/1:832,345:0.29:1177
chr7	2968486	rs1183431	G	C	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.747;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:81,21:0.21:102
chr7	2971977	rs5881948	T	TG	1606.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	2977732	rs17257454	T	C	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:411,151:0.27:562
chr7	2985361	rs3839716	GAC	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.000;QD=1.09;ReadPosRankSum=2.272;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:82,14:0.15:96
chr7	2998049	.	T	G	1009.77	.	AC=1;AF=0.500;AN=2;DP=220;set=Intersection	GT:AD:AF:DP	0/1:140,67:0.32:207
chr7	3179968	rs7779230	T	G	11081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=687;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=1.534;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:156,510:0.77:666
chr7	3179973	rs7791857	G	C	25561.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.16;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,621:1.00:621
chr7	3179991	rs7779245	T	C	12659.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr7	3180550	rs11374295	C	CT	579.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.866;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.000;QD=7.07;ReadPosRankSum=2.109;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:37,45:0.55:82
chr7	3180657	rs6964682	C	T	21016.77	.	AC=2;AF=1.00;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	1/1:3,829:1.00:832
chr7	3180880	.	CTTTTT	C	3019.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=30.934;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.464;QD=21.12;ReadPosRankSum=1.844;SOR=3.157;set=HC	GT:AD:AF:DP	0/1:35,108:0.76:143
chr7	3187085	rs6954885	T	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:15,47:0.76:62
chr7	3188513	rs7810868	C	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr7	3188549	rs10257432	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr7	3188576	rs10257447	T	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr7	3188712	rs10254519	A	C	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.010;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:139,47:0.25:186
chr7	3188738	rs34925290	G	C	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.080;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:98,41:0.29:139
chr7	3197788	rs73672278	G	C	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr7	3197867	rs4634530	T	C	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:51,94:0.65:145
chr7	3205540	rs80279893	C	T	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.27;ReadPosRankSum=2.117;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr7	3205581	rs7782623	C	T	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.39;ReadPosRankSum=1.899;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,48:0.81:59
chr7	3205635	rs7801306	A	G	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:19,84:0.82:103
chr7	3205705	rs10951088	T	G	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	3205758	rs114296324	C	T	2522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.722;QD=13.79;ReadPosRankSum=0.192;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:64,119:0.65:183
chr7	3205763	rs10951089	A	C	6806.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.24;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	3341390	rs10228086	T	C	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	3341609	rs111765287	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr7	3658908	rs75615634	G	C	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:34,76:0.69:110
chr7	4011331	rs6965800	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr7	4014022	rs6977582	C	T	6940.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:137,321:0.70:458
chr7	4026944	rs7785899	C	G	5671.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:107,246:0.70:353
chr7	4050512	rs11979817	T	C	6762.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:121,302:0.71:423
chr7	4050753	rs11979185	A	C	5992.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:89,252:0.74:341
chr7	4107640	rs10226621	A	C	5091.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:67,225:0.77:292
chr7	4118978	rs138579749	C	CT	3707.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:83,175:0.68:258
chr7	4118993	rs7789115	A	G	5167.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:106,232:0.69:338
chr7	4119285	rs1880860	A	G	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:20,80:0.80:100
chr7	4169665	rs61734776	G	A	13583.77	.	AC=1;AF=0.500;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	0/1:244,624:0.72:868
chr7	4169704	rs61734791	C	T	10907.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	0/1:235,512:0.69:747
chr7	4171814	rs35849025	A	G	1933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=1.122;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:565,156:0.22:721
chr7	4185592	rs608271	A	G	12448.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:4,472:0.99:476
chr7	4189075	rs659182	G	C	41980.77	.	AC=2;AF=1.00;AN=2;DB;DP=1630;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,1601:1.00:1601
chr7	4189123	rs4720177	G	A	19796.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	1/1:0,743:1.00:743
chr7	4201513	rs145683198	G	A	13741.77	.	AC=1;AF=0.500;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	0/1:237,637:0.73:874
chr7	4213749	rs4723444	T	A	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	4213877	rs601424	T	C	20592.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	1/1:2,813:1.00:815
chr7	4213940	rs671756	T	C	14070.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr7	4213975	rs671694	A	G	8321.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr7	4214041	rs4723445	C	T	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-0.263;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:68,24:0.26:92
chr7	4214046	rs600537	T	C	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.816;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-0.983;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:66,25:0.27:91
chr7	4215298	rs4720185	T	C	3206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=1011;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-1.949;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:754,239:0.24:993
chr7	4217969	rs649494	T	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr7	4259953	rs13224192	G	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr7	4266963	rs80155066	C	T	1032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=1.595;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:19,47:0.71:66
chr7	4267072	rs597636	T	A	3172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-1.396;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:66,156:0.70:222
chr7	4277219	rs73050208	G	A	2785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.027;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:536,191:0.26:727
chr7	4304727	rs10270413	A	G	7922.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:174,375:0.68:549
chr7	4308362	rs8514	C	T	2188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.735;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:529,169:0.24:698
chr7	4490854	rs314605	C	T	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.374;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:333,78:0.19:411
chr7	4490934	rs442775	AC	GT	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=1.204;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:166,33:0.17:199
chr7	4714912	rs28631893	C	T	21021.77	.	AC=1;AF=0.500;AN=2;DB;DP=1402;set=Intersection	GT:AD:AF:DP	0/1:408,987:0.71:1395
chr7	4715012	.	G	GT	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.689;QD=1.09;ReadPosRankSum=0.374;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:160,42:0.21:202
chr7	4777093	.	ATG	A	3558.73	.	AC=1;AF=0.500;AN=2;DP=197;set=Intersection	GT:AD:AF:DP	0/1:46,113:0.71:159
chr7	4791392	rs55638183	C	G	7148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=-1.202;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:105,330:0.76:435
chr7	4794263	rs146424532	C	T	5794.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:115,262:0.69:377
chr7	4802029	rs6976790	T	G	11114.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.93;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	4802035	rs1053753	A	G	3721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=1.216;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:89,173:0.66:262
chr7	4804085	rs73671903	C	T	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:45,140:0.76:185
chr7	4823293	rs186028694	C	G	22737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;ClippingRankSum=0.000;DB;DP=1557;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.928;QD=14.79;ReadPosRankSum=0.092;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:463,1074:0.70:1537
chr7	4823313	rs73305371	A	G	22696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.176;ClippingRankSum=0.000;DB;DP=1607;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.953;QD=14.39;ReadPosRankSum=-2.030;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:493,1084:0.69:1577
chr7	4823971	rs17135121	C	T	13513.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;set=Intersection	GT:AD:AF:DP	0/1:240,615:0.72:855
chr7	4825140	rs73305376	C	T	10972.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:162,506:0.76:668
chr7	4825391	.	C	CT	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.365;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr7	4826100	rs113569690	T	TA	5332.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:52,193:0.79:245
chr7	4828163	rs73671925	T	C	18597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.83;ReadPosRankSum=0.316;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:192,453:0.70:645
chr7	4828166	rs73671926	C	T	18596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.92;ReadPosRankSum=0.880;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:199,467:0.70:666
chr7	4829658	.	AC	A	2966	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=6;HapScore=1;MGOF=49;MMLQ=26;MQ=60.05;NF=28;NR=27;PP=2966;QD=20;SC=CTTCGGCACCACCCCTAGCTG;SbPval=0.36;Source=Platypus;TC=99;TCF=46;TCR=53;TR=55;WE=4829666;WS=4829648;set=Platypus	GT:AD:AF:DP	0/1:44,55:0.56:99
chr7	4829701	rs35614647	ACCCACAGC	A	9701.73	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:135,244:0.64:379
chr7	4830295	rs73305392	C	T	16564.77	.	AC=1;AF=0.500;AN=2;DB;DP=1083;set=Intersection	GT:AD:AF:DP	0/1:290,752:0.72:1042
chr7	4839163	rs3736241	A	C	24968.77	.	AC=1;AF=0.500;AN=2;DB;DP=1615;set=Intersection	GT:AD:AF:DP	0/1:430,1164:0.73:1594
chr7	4839990	rs62450182	C	A	7825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.95;ReadPosRankSum=0.236;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:78,202:0.72:280
chr7	4839993	rs3816853	C	G	7647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=3.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.08;ReadPosRankSum=1.314;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:80,183:0.70:263
chr7	4841313	rs6966329	A	G	9831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.83;ReadPosRankSum=-1.362;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:100,241:0.71:341
chr7	4841318	rs6945581	G	A	10016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.44;ReadPosRankSum=-0.704;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:110,255:0.70:365
chr7	4841470	rs414035	T	C	7696.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr7	4841655	rs58207166	T	C	5154.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:104,239:0.70:343
chr7	4845312	rs2306919	T	G	8996.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:152,420:0.73:572
chr7	4862259	rs3816852	A	G	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,56:0.70:80
chr7	4871879	rs3830494	C	CAT	18037.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.121;QD=28.63;ReadPosRankSum=2.315;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:185,445:0.71:630
chr7	4874250	rs76862906	G	A	11652.77	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:256,554:0.68:810
chr7	4874334	rs75074289	C	G	9844.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:192,448:0.70:640
chr7	4876309	rs3763383	C	T	6819.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:140,324:0.70:464
chr7	4900095	rs1553960	A	G	5093.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:84,227:0.73:311
chr7	4900165	rs6964535	T	C	4286.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:63,187:0.75:250
chr7	4901191	rs3750010	T	C	13798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=-1.017;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:196,631:0.76:827
chr7	4901385	rs3750009	A	C	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:24,84:0.78:108
chr7	4917798	rs10267139	T	C	5494.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:84,259:0.76:343
chr7	4946973	rs10951715	A	G	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	4959789	rs932060	G	A	15886.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr7	4959807	rs932061	G	A	18342.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr7	5015884	rs6978131	G	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr7	5023202	rs10156118	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.05;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	5023420	rs6965043	A	G	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.50;QD=25.50;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	5023453	.	TTTG	T,TTTGTTGTTG	7874.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.59;QD=38.98;SOR=0.936;set=HC	GT:AD:AF:DP	1/2:0,167,35:0.83,0.17:202
chr7	5026169	.	TTA	T	586.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.57;MQRankSum=0.932;QD=16.76;ReadPosRankSum=1.104;SOR=0.656;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr7	5026348	rs12671595	C	T	3297.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:69,144:0.68:213
chr7	5028787	rs144982360	AT	A	4725.73	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:84,172:0.67:256
chr7	5036040	rs73330935	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr7	5105133	rs12334144	C	T	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.576;QD=3.28;ReadPosRankSum=-0.526;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:317,103:0.25:420
chr7	5112035	rs7780525	C	T	13232.77	.	AC=1;AF=0.500;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	0/1:222,603:0.73:825
chr7	5112108	rs6862	G	T	2664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=1363;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.428;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:1094,262:0.19:1356
chr7	5112530	rs3801055	T	C	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:31,67:0.68:98
chr7	5112554	rs1130329	A	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:94,46:0.33:140
chr7	5112810	rs141207342	C	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.251;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:374,84:0.18:458
chr7	5112853	rs73316654	G	C	3791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.50;ReadPosRankSum=-0.107;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:40,165:0.80:205
chr7	5161512	rs117992329	G	T	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	5161640	rs62441986	G	C	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.220;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-0.062;QD=2.50;ReadPosRankSum=1.578;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:185,48:0.21:233
chr7	5161858	rs11289360	GA	G	2378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-0.262;QD=11.72;ReadPosRankSum=1.457;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:44,159:0.78:203
chr7	5166400	rs73318773	G	A	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=3.865;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.504;QD=1.98;ReadPosRankSum=-0.057;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:201,49:0.20:250
chr7	5166500	rs112252777	A	G	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=0.873;QD=1.53;ReadPosRankSum=0.219;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:592,131:0.18:723
chr7	5167160	rs9655048	C	A	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr7	5167408	rs888584	G	A	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=-0.176;QD=2.70;ReadPosRankSum=0.136;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:252,71:0.22:323
chr7	5254227	rs4587243	C	G	16586.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr7	5257490	rs7791896	T	C	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	5262385	rs4720537	G	A	9786.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr7	5269424	rs7785898	A	C	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	5331307	rs12667188	A	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	5336855	rs137903684	TCCCTTCTCTGTC	T	1315.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=5.579;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.637;QD=4.36;ReadPosRankSum=2.553;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:252,50:0.17:302
chr7	5336867	rs201808177	C	T	5713.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:57,252:0.82:309
chr7	5336885	rs13244318	C	T	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.963;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=5.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=2.993;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:203,49:0.19:252
chr7	5338714	rs6950111	T	C	6516.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.813;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=3.061;MLEAC=2;MLEAF=1.000;MQ=59.81;MQRankSum=-0.044;QD=24.97;ReadPosRankSum=1.135;SOR=0.272;set=HC	GT:AD:AF:DP	1/1:1,260:1.00:261
chr7	5338770	rs6946155	A	G	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	5340002	rs34551990	C	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	5342413	rs11979775	T	C	6536.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:117,305:0.72:422
chr7	5347295	rs7794563	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	5347749	rs9639976	G	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.421;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr7	5352635	.	TGAG	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=0.429;QD=0.32;ReadPosRankSum=1.582;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:186,16:0.08:202
chr7	5352659	rs138591330	G	T	4132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-1.448;QD=16.47;ReadPosRankSum=-0.418;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:57,194:0.77:251
chr7	5352731	rs114222264	G	A	8076.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:116,363:0.76:479
chr7	5353061	rs188607046	C	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:201,76:0.27:277
chr7	5353252	rs58819185	G	C	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:25,80:0.76:105
chr7	5353600	rs11292393	GT	G	376.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.075;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr7	5364981	rs10270426	C	T	4076.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:66,188:0.74:254
chr7	5369592	rs78011184	A	G	12466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=785;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.92;ReadPosRankSum=0.406;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:206,577:0.74:783
chr7	5372406	rs13238738	G	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:164,61:0.27:225
chr7	5391424	rs181028524	G	A	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.369;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:220,61:0.22:281
chr7	5396715	rs35508364	T	C	5825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=1772;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.232;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:1313,432:0.25:1745
chr7	5396955	rs7805732	A	G	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr7	5399044	rs12531309	C	G	2529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.495;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:371,159:0.30:530
chr7	5402606	rs4357206	G	A	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.699;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.599;QD=3.75;ReadPosRankSum=-0.224;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:106,36:0.25:142
chr7	5409937	rs58182076	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:69,21:0.23:90
chr7	5410425	rs12671708	G	C	7533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=1430;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.990;QD=5.35;ReadPosRankSum=1.014;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:945,462:0.33:1407
chr7	5417421	rs7796767	A	G	6319.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:104,260:0.71:364
chr7	5427652	rs4720623	G	A	21024.77	.	AC=1;AF=0.500;AN=2;DB;DP=1321;set=Intersection	GT:AD:AF:DP	0/1:346,962:0.74:1308
chr7	5427720	rs4724663	A	G	20162.77	.	AC=2;AF=1.00;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	1/1:0,744:1.00:744
chr7	5429989	.	CAAA	C	2543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.451;QD=14.05;ReadPosRankSum=-0.121;SOR=2.187;set=HC	GT:AD:AF:DP	0/1:51,130:0.72:181
chr7	5430283	rs67295626	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr7	5434135	rs4724668	A	G	6123.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr7	5459984	rs75583325	T	C	34069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=2214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=-0.036;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:617,1584:0.72:2201
chr7	5460452	rs113626522	G	C	18201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;ClippingRankSum=0.000;DB;DP=1203;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=-0.634;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:339,846:0.71:1185
chr7	5460518	rs139552678	C	CGCCGGGGCCGCCGGACTG	14511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.682;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=10.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.87;ReadPosRankSum=3.317;SOR=1.353;set=HC	GT:AD:AF:DP	0/1:196,344:0.64:540
chr7	5487458	rs4236392	T	C	8275.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr7	5540769	rs6953642	A	C	15295.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr7	5545355	rs13245207	T	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	5567596	rs852424	C	T	23172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=1543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=-1.162;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:427,1082:0.72:1509
chr7	5567677	rs11546939	C	T	2847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=1.568;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:509,185:0.27:694
chr7	5568366	rs852423	A	G	25659.77	.	AC=2;AF=1.00;AN=2;DB;DP=988;set=Intersection	GT:AD:AF:DP	1/1:1,980:1.00:981
chr7	5569327	rs2908425	G	A	6102.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:93,255:0.73:348
chr7	5643145	rs1640233	T	C	32300.77	.	AC=2;AF=1.00;AN=2;DB;DP=1311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.45;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,1269:1.00:1269
chr7	5643479	rs1725183	C	T	12646.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:1,487:1.00:488
chr7	5645116	rs116036920	T	C	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:157,106:0.40:263
chr7	5662848	rs6975280	A	C	4849.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:101,226:0.69:327
chr7	5751250	rs3735289	G	A	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	5760860	rs2302907	G	A	3266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-0.376;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:260,183:0.41:443
chr7	5760971	rs4720636	A	T	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	5765034	rs77500990	C	T	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:80,85:0.52:165
chr7	5767618	.	T	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=9.581;MLEAC=1;MLEAF=0.500;MQ=48.96;MQRankSum=-2.556;QD=4.35;ReadPosRankSum=-0.972;SOR=0.122;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr7	5770273	rs139787600	TAAC	T	2524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=0.419;QD=16.94;ReadPosRankSum=1.573;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:80,69:0.46:149
chr7	5770330	rs35732993	T	C	1780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=55.04;MQRankSum=-2.788;QD=10.99;ReadPosRankSum=-0.900;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:75,87:0.54:162
chr7	5770400	rs111942365	G	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=6.147;MLEAC=1;MLEAF=0.500;MQ=48.37;MQRankSum=-2.050;QD=8.62;ReadPosRankSum=1.104;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:46,33:0.42:79
chr7	5770454	rs139784853	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.171;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.430;MLEAC=1;MLEAF=0.500;MQ=49.92;MQRankSum=-1.452;QD=4.65;ReadPosRankSum=-1.104;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr7	5779197	.	C	G	3000.77	.	AC=1;AF=0.500;AN=2;DP=760;set=Intersection	GT:AD:AF:DP	0/1:549,205:0.27:754
chr7	5779367	.	C	T	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.609;QD=4.06;ReadPosRankSum=-2.945;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:261,100:0.28:361
chr7	5779375	rs10233615	T	C	9950.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr7	5780537	rs139686645	GA	G	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-0.128;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:46,25:0.35:71
chr7	5800161	rs28519438	A	C	794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-1.700;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:18,38:0.68:56
chr7	5800769	rs3857756	A	G	4438.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	5886342	.	CA	C	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.036;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=5.633;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=1.026;QD=2.60;ReadPosRankSum=-0.728;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:29,26:0.47:55
chr7	5920394	rs201796201	T	TA	1124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.857;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-3.306;QD=9.53;ReadPosRankSum=-1.577;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:36,82:0.69:118
chr7	5920406	rs10235465	T	A	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	5922009	rs41280699	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,34:0.32:105
chr7	5923738	rs3890913	A	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.95;QD=27.93;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	5938326	rs117593220	C	T	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.68;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	5949726	rs1138495	T	C	4655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.259;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=52.07;MQRankSum=-18.343;QD=7.08;ReadPosRankSum=-7.172;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:416,242:0.37:658
chr7	5949830	rs11771500	C	T	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:333,176:0.35:509
chr7	5949865	rs144098604	C	G	4557.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:83,136:0.62:219
chr7	5949876	rs147234259	G	A	3654.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:63,91:0.59:154
chr7	5952345	rs117314112	T	C	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:39,81:0.68:120
chr7	5958650	rs138701366	G	A	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.01;QD=24.73;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	5965258	rs201118476	T	C	6801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=47.48;MQRankSum=-10.155;QD=9.04;ReadPosRankSum=0.215;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:393,359:0.48:752
chr7	5983012	rs150999559	A	G	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.37;QD=29.97;SOR=1.534;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	5983195	rs138475267	C	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	5983553	rs80120223	A	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.05;QD=28.72;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	6005323	rs200962894	C	T	331.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.18;MQRankSum=1.903;QD=23.66;ReadPosRankSum=1.735;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr7	6022629	rs55954143	G	A	450.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.75;MQRankSum=-0.175;QD=21.47;ReadPosRankSum=2.577;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr7	6026775	rs2228006	T	C	11240.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr7	6026988	rs1805321	G	A	3409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.554;ClippingRankSum=0.000;DB;DP=883;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=1.561;QD=3.89;ReadPosRankSum=0.288;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:646,231:0.26:877
chr7	6031804	rs373566669	GT	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=0.66;ReadPosRankSum=2.110;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:92,28:0.23:120
chr7	6036980	rs1805319	G	C	13714.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=25.35;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,541:1.00:541
chr7	6037057	rs60794673	GA	G	1111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=7.451;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=3.321;QD=3.30;ReadPosRankSum=0.341;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:192,145:0.43:337
chr7	6038722	rs62456182	T	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:93,44:0.32:137
chr7	6048556	rs3735295	G	A	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr7	6048973	rs1062372	C	A	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr7	6049209	rs2302335	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr7	6054987	rs6979676	G	A	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:23,96:0.81:119
chr7	6057777	rs371698854	CTT	C,CTTT	2223.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.596;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=-0.269;SOR=0.751;set=HC	GT:AD:AF:DP	1/2:85,93,133:0.30,0.43:311
chr7	6063283	rs4560	C	T	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:471,181:0.28:652
chr7	6063674	rs12657	G	A	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:205,96:0.32:301
chr7	6064470	.	C	CT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=2.559;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:61,25:0.29:86
chr7	6065914	rs10253000	T	C	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.750;QD=3.37;ReadPosRankSum=0.884;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:197,65:0.25:262
chr7	6066057	rs34019419	G	GC	7526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=1061;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.918;QD=7.18;ReadPosRankSum=0.336;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:776,273:0.26:1049
chr7	6066396	rs142183790	T	C	12960.77	.	AC=1;AF=0.500;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	0/1:254,609:0.71:863
chr7	6071060	rs4724769	G	A	4284.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:475,244:0.34:719
chr7	6071277	rs4724770	A	G	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr7	6075823	rs2302334	A	T	4441.77	.	AC=1;AF=0.500;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	0/1:631,280:0.31:911
chr7	6077173	rs116211001	T	A	2463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.811;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.806;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:84,133:0.61:217
chr7	6078376	rs2302331	A	C	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:292,136:0.32:428
chr7	6080853	rs34743814	GA	G	665.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.249;QD=3.66;ReadPosRankSum=0.328;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:115,67:0.37:182
chr7	6084310	rs511969	G	T	1987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.566;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:326,132:0.29:458
chr7	6088349	rs523276	A	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	6097667	rs558030	T	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.842;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr7	6097868	rs559842	A	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.952;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr7	6151400	.	A	AT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=2.311;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr7	6155166	rs62454267	G	T	2295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=683;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.888;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:505,164:0.25:669
chr7	6178931	rs6973832	G	A	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:39,87:0.69:126
chr7	6182755	rs17136039	C	G	3963.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:65,176:0.73:241
chr7	6182810	rs116532378	G	C	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:12,51:0.81:63
chr7	6185964	rs200232891	GT	G	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=6.852;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.730;QD=8.10;ReadPosRankSum=1.569;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr7	6193464	rs61732616	T	G	2716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.158;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:50,129:0.72:179
chr7	6193520	rs61729725	CG	TC	9391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.440;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.29;ReadPosRankSum=1.100;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:99,233:0.70:332
chr7	6199166	rs7783538	C	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:61,30:0.33:91
chr7	6199256	rs59486546	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	6204999	rs2301910	A	C	23557.77	.	AC=2;AF=1.00;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	1/1:2,915:1.00:917
chr7	6312039	rs28439928	T	G	4442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.33;ReadPosRankSum=0.785;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:101,209:0.67:310
chr7	6370194	rs6952125	C	T	21562.77	.	AC=1;AF=0.500;AN=2;DB;DP=1498;set=Intersection	GT:AD:AF:DP	0/1:485,1001:0.67:1486
chr7	6370305	rs3750039	C	G	15066.77	.	AC=1;AF=0.500;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	0/1:338,693:0.67:1031
chr7	6370406	rs3750040	C	T	9940.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:282,459:0.62:741
chr7	6426941	rs702483	C	T	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:98,152:0.61:250
chr7	6426954	rs3729790	G	A	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:98,150:0.60:248
chr7	6431690	rs836478	C	T	21076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=1482;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.976;QD=14.30;ReadPosRankSum=1.801;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:476,998:0.68:1474
chr7	6441799	rs836551	G	C	2428.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:32,100:0.76:132
chr7	6449496	rs2303361	T	C	17002.77	.	AC=1;AF=0.500;AN=2;DB;DP=1222;set=Intersection	GT:AD:AF:DP	0/1:376,822:0.69:1198
chr7	6456347	rs1055428	G	T	16502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=1067;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=3.853;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:279,764:0.73:1043
chr7	6456669	rs836508	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr7	6461310	rs79949326	C	T	8953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=1.327;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:197,414:0.68:611
chr7	6461534	rs2288153	C	T	8371.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:205,390:0.66:595
chr7	6465441	rs2272157	C	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr7	6476237	rs3750038	C	T	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:58,129:0.69:187
chr7	6485740	.	CA	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=13.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.182;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:167,45:0.21:212
chr7	6487293	rs3750037	G	C	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:201,90:0.31:291
chr7	6505901	rs2230263	T	C	9522.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr7	6537310	rs116709715	C	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=1.277;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:21,39:0.65:60
chr7	6537655	rs4574760	C	T	3489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.646;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:462,213:0.32:675
chr7	6537821	rs6463568	G	C	19089.77	.	AC=2;AF=1.00;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	1/1:0,725:1.00:725
chr7	6541347	rs7791451	C	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:41,74:0.64:115
chr7	6543334	rs140972344	G	A	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=1.932;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:59,126:0.68:185
chr7	6545335	rs9640023	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:17,70:0.80:87
chr7	6545619	rs11980487	T	C	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,33:0.31:107
chr7	6550494	rs12702520	G	A	6782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=1528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.307;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:1075,441:0.29:1516
chr7	6550540	rs61732373	G	A	5631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=1269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-1.243;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:892,367:0.29:1259
chr7	6560531	rs10247242	T	C	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr7	6566079	.	C	G	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=1.202;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:80,30:0.27:110
chr7	6566268	rs147492629	C	T	5952.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:111,278:0.71:389
chr7	6566322	rs2881723	T	G	18034.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,712:1.00:712
chr7	6566442	rs12702526	C	T	2481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-1.205;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:303,150:0.33:453
chr7	6570618	rs11772639	G	C	10030.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:147,466:0.76:613
chr7	6590693	rs6463571	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr7	6591009	rs11761490	C	T	3484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-0.585;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:521,221:0.30:742
chr7	6591041	rs4724818	C	G	7716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=-0.015;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:158,348:0.69:506
chr7	6591115	rs73674133	A	G	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:91,145:0.61:236
chr7	6620402	rs116617247	G	T	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr7	6623282	rs145762380	C	A	3375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=1.989;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:33,101:0.75:134
chr7	6623291	rs116775117	C	T	2617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.54;ReadPosRankSum=2.565;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:20,63:0.76:83
chr7	6628242	rs3088114	T	C	7594.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:127,346:0.73:473
chr7	6630134	rs191812176	G	C	4524.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:143,223:0.61:366
chr7	6641881	rs7790579	C	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr7	6642265	rs111973277	AT	A	6577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.880;QD=18.79;ReadPosRankSum=-0.226;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:116,234:0.67:350
chr7	6647738	rs4416743	T	C	13950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DB;DP=972;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=-0.457;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:299,665:0.69:964
chr7	6656830	rs2243563	G	A	3299.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:399,195:0.33:594
chr7	6656897	rs1806552	A	G	12428.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr7	6660790	rs940873	G	A	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:501,204:0.29:705
chr7	6713985	rs2243620	A	G	16412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=1056;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.71;ReadPosRankSum=0.669;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:269,776:0.74:1045
chr7	6714764	rs114404778	G	A	14236.77	.	AC=1;AF=0.500;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	0/1:172,646:0.79:818
chr7	6714961	.	C	CT	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.781;QD=0.81;ReadPosRankSum=1.707;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:111,28:0.20:139
chr7	6715783	rs74588155	T	C	16198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=1002;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=-0.024;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:247,743:0.75:990
chr7	6732315	rs61227179	A	C	5962.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:98,268:0.73:366
chr7	6744957	rs7798471	T	C	5913.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:98,268:0.73:366
chr7	6785956	rs28694792	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr7	6786731	rs111706670	C	T	6270.77	.	AC=1;AF=0.500;AN=2;DB;DP=950;set=Intersection	GT:AD:AF:DP	0/1:583,367:0.39:950
chr7	6790900	rs200453156	T	C	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=21.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	6791040	rs199677566	G	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.583;MLEAC=1;MLEAF=0.500;MQ=48.91;MQRankSum=0.957;QD=2.28;ReadPosRankSum=-0.155;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr7	6798600	rs199717429	A	T	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.506;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=46.47;MQRankSum=-1.737;QD=5.14;ReadPosRankSum=2.551;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr7	6825540	.	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=47.12;MQRankSum=-1.673;QD=2.15;ReadPosRankSum=-1.384;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr7	6826429	rs200125502	TAATG	T	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.58;MQRankSum=-2.168;QD=24.27;ReadPosRankSum=-0.150;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr7	6826706	.	G	A	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=48.11;MQRankSum=-0.810;QD=11.42;ReadPosRankSum=-0.617;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr7	6844574	rs75680229	C	G	1801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=1019;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.17;MQRankSum=-10.144;QD=1.77;ReadPosRankSum=-0.531;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:822,197:0.19:1019
chr7	6845516	rs144852517	C	T	1719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.77;MQRankSum=-8.754;QD=6.49;ReadPosRankSum=1.631;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:166,99:0.37:265
chr7	6852506	rs148747893	G	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:8,48:0.86:56
chr7	6854272	rs11769113	A	T	9087.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	6861880	rs2711224	G	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.595;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=51.99;MQRankSum=-6.875;QD=8.89;ReadPosRankSum=2.628;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:43,29:0.40:72
chr7	6862789	rs6970263	C	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr7	6863146	.	C	CTTT	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=0.000;QD=10.08;ReadPosRankSum=1.478;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr7	7135870	rs6976810	T	A	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr7	7136061	rs35367486	G	GA	13403.73	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr7	7136077	rs17163287	C	A	14524.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr7	7277807	rs3807862	G	A	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	7400239	rs7786515	A	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr7	7412620	rs61399779	C	T	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:61,172:0.74:233
chr7	7413149	rs61744841	T	C	5955.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:153,290:0.65:443
chr7	7421019	rs1294626	C	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr7	7477250	rs5882126	T	TA	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	7480376	rs33937466	C	CA	10245.73	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:161,379:0.70:540
chr7	7483083	rs10234554	C	T	3101.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:39,131:0.77:170
chr7	7491873	rs4720735	AG	CT	5248.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	7495735	rs55745506	T	C	4597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=0.944;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:89,217:0.71:306
chr7	7514235	rs6952195	C	G	10011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=0.254;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:220,475:0.68:695
chr7	7514331	rs6965546	C	T	5251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-0.879;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:103,244:0.70:347
chr7	7516958	rs10226811	T	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr7	7528880	rs12671912	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr7	7528951	rs6463696	C	T	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	7557297	rs1016028	T	C	3832.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:96,179:0.65:275
chr7	7559541	rs17151557	A	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	7570959	rs17168516	T	G	4583.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:85,210:0.71:295
chr7	7571094	rs7804532	G	C	5669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-0.889;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:122,255:0.68:377
chr7	7622696	rs4720741	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr7	7627994	rs6463702	T	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr7	7628275	rs7801367	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr7	7645535	rs10276434	A	G	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr7	7646651	rs7806046	G	T	8257.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:175,392:0.69:567
chr7	7646687	rs4222	A	G	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:443,179:0.29:622
chr7	7712941	rs10527750	TAGCAGCAGC	T,TAGC	4453.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=315;set=Intersection	GT:AF:DP	1/2:0.11,0.85:198
chr7	7841338	rs11555073	C	G	4220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.337;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:222,221:0.50:443
chr7	7841561	rs2348558	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	8008970	rs7786263	C	G	9821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=1162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.093;QD=8.56;ReadPosRankSum=0.299;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:626,522:0.45:1148
chr7	8043504	rs38013	A	G	1179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=-0.171;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:60,61:0.50:121
chr7	8110475	rs10253861	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr7	8110780	rs10486207	A	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:43,46:0.52:89
chr7	8125964	rs929509	C	T	19356.77	.	AC=2;AF=1.00;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	1/1:1,746:1.00:747
chr7	8126194	rs12847	A	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	8132252	rs4725069	T	C	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	8181555	rs80350640	C	CCA	46896.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=1296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=-0.146;QD=38.63;ReadPosRankSum=-1.756;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:8,1206:0.99:1214
chr7	8196529	rs10282493	A	T	13354.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;QD=25.73;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr7	8196567	rs200840693	AAAAAAAAAAAAAAAAAAG	A	2283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.500;MQ=62.49;MQRankSum=1.576;QD=9.60;ReadPosRankSum=4.370;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:82,156:0.66:238
chr7	8267235	rs34695487	C	CT	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.778;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.248;QD=3.06;ReadPosRankSum=0.514;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr7	8475147	rs6949787	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr7	8790549	rs10225984	C	T	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	9765662	rs10240050	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-0.967;QD=7.58;ReadPosRankSum=0.379;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr7	9765716	rs10255217	A	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-1.732;QD=7.38;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	10973362	rs7789764	C	T	2189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.772;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:43,106:0.71:149
chr7	11021935	.	TTG	T	73	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=21;MQ=60.0;NF=1;NR=2;PP=73;QD=27.3333333333;SC=TGTGTCAGCGTTGTGTGTGTG;SbPval=0.78;Source=Platypus;TC=5;TCF=2;TCR=3;TR=3;WE=11021944;WS=11021925;set=Platypus	GT:AD:AF:DP	1/0:2,3:0.60:5
chr7	11022230	rs218966	A	G	1795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.203;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:43,74:0.63:117
chr7	11022564	rs218965	G	A	7165.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:200,337:0.63:537
chr7	11208989	rs28394821	C	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr7	11415510	rs17552742	A	G	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:327,132:0.29:459
chr7	11416378	rs2189351	A	G	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	11418931	rs12670599	T	C	16571.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr7	11419378	rs2107162	T	C	7840.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr7	11441358	rs10950347	A	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	11441700	rs1859225	G	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	11446902	rs6956916	T	G	8665.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr7	11447159	rs6975407	G	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	11452204	rs2301743	C	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	11464297	rs1859226	T	C	12374.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr7	11485591	rs140188344	G	A	3667.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:86,161:0.65:247
chr7	11509359	.	G	A	196.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr7	11509561	rs2285744	G	C	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.445;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-1.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:397,133:0.25:530
chr7	11521542	rs3735502	T	C	3066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.484;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:526,207:0.28:733
chr7	11581121	rs47	T	C	14413.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:264,667:0.72:931
chr7	11676377	rs2074598	G	A	3624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=1105;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.550;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:826,268:0.24:1094
chr7	12255434	rs6460901	C	T	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-1.370;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:64,66:0.51:130
chr7	12255511	rs6460902	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.405;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr7	12263799	rs11509137	TG	CA	6754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.416;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.59;ReadPosRankSum=-2.378;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:127,172:0.58:299
chr7	12269260	rs3839691	A	ATGTT	345.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	12269417	rs3173615	C	G	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr7	12270625	rs2302635	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=0.541;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	12270770	rs2302634	T	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-0.224;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr7	12270815	rs2302633	C	T	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr7	12270967	rs2302632	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.90;ReadPosRankSum=0.137;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr7	12271452	rs3800842	A	G	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:107,120:0.53:227
chr7	12370794	rs1059002	T	C	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=0.734;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:36,39:0.52:75
chr7	12370952	rs6954265	C	T	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.644;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:54,60:0.53:114
chr7	12371001	rs6954555	G	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=1.648;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr7	12371019	rs3815534	A	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr7	12372999	rs6460928	T	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	12373082	rs6460929	C	T	2045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.038;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:78,98:0.56:176
chr7	12373353	rs6460930	TG	CA	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;JOINED;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr7	12375667	rs35608044	G	GT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=1.159;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr7	12376811	rs2192828	A	C	5528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-1.105;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:296,281:0.49:577
chr7	12382637	rs1440030	C	T	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.705;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.294;QD=5.81;ReadPosRankSum=-1.247;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:69,40:0.37:109
chr7	12383967	rs1440032	T	A	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:125,129:0.51:254
chr7	12391319	rs6967385	G	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=-2.670;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:24,34:0.59:58
chr7	12393966	rs6944618	A	G	18500.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.57;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr7	12393974	rs6944626	A	C	19365.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr7	12394053	rs6945167	G	T	18763.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,737:1.00:737
chr7	12395813	rs2119141	T	C	4202.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.967;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=11.188;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.61;ReadPosRankSum=-0.949;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,175:0.98:178
chr7	12396040	rs4719307	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	12400837	rs2053380	G	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	12406989	rs6460939	C	G	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	12410112	rs963323	G	A	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:108,99:0.48:207
chr7	12417407	rs7793993	C	T	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	12418938	rs10499421	G	C	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr7	12418964	rs10270931	T	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:86,55:0.39:141
chr7	12419039	rs10570724	TCA	T	5870.73	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:225,157:0.41:382
chr7	12419108	rs6967241	A	T	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:156,153:0.50:309
chr7	12420092	rs1025787	G	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr7	12420447	rs6959370	T	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr7	12428608	rs6954047	C	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:84,88:0.51:172
chr7	12428803	rs848016	G	A	3384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-1.214;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:201,176:0.47:377
chr7	12433195	rs12669558	T	C	219.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr7	12609988	rs2240571	G	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr7	12610451	rs76096341	G	A	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:215,197:0.48:412
chr7	12610594	rs2240572	A	G	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=-2.854;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:116,79:0.41:195
chr7	12611252	rs6460967	T	C	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,47:0.44:107
chr7	12617224	rs55829483	C	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr7	12620804	rs17283717	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,43:0.44:97
chr7	12636026	rs758111	T	C	14962.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr7	12644334	rs849778	G	T	8143.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr7	12644348	rs78612532	G	GGT	4631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.644;QD=17.15;ReadPosRankSum=-0.549;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:52,218:0.81:270
chr7	12675546	rs2708655	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr7	12683807	rs186991856	C	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:96,51:0.35:147
chr7	12684340	rs2691810	C	T	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	12727826	rs2280633	G	C	2317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-2.661;QD=8.65;ReadPosRankSum=2.447;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:144,124:0.46:268
chr7	12728489	rs112853446	A	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:123,105:0.46:228
chr7	13947289	rs10950497	G	A	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr7	13978645	rs3801098	C	T	1428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=0.385;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:21,36:0.63:57
chr7	13978648	rs3801099	T	A	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.571;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.77;ReadPosRankSum=0.623;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:23,38:0.62:61
chr7	13978809	rs9639168	T	C	4659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.351;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:225,242:0.52:467
chr7	14016939	rs2074670	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr7	14017007	rs2066977	CC	TG	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.846;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=-1.167;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:55,32:0.37:87
chr7	14017126	rs5882424	T	TA	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=0.883;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr7	14025640	rs3801110	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr7	14025727	rs3823704	C	T	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:115,86:0.43:201
chr7	14025766	rs10215655	T	A	2909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=1.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-0.544;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:185,153:0.45:338
chr7	14026357	rs3213661	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	14027867	rs59844225	G	GCA	1657.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:67,59:0.47:126
chr7	14028189	rs11364123	CA	C	936.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.848;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:69,73:0.51:142
chr7	14028220	rs72368501	GA	G,GAA	1020.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.182;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.459;SOR=1.002;set=HC	GT:AD:AF:DP	1/2:23,56,47:0.44,0.37:126
chr7	14028245	rs11460974	G	GA,GAA	3083.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.15;ReadPosRankSum=0.098;SOR=0.587;set=HC	GT:AD:AF:DP	1/2:12,122,27:0.76,0.17:161
chr7	14028707	rs140879246	TA	T	6596.73	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:200,237:0.54:437
chr7	14028794	rs10622991	T	TAA	1431.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:84,71:0.46:155
chr7	14028860	rs11328804	CA	C	279.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr7	14384832	rs2271267	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.06;ReadPosRankSum=-0.483;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	14517650	rs3839747	T	TAC	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.691;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr7	14517977	rs3823843	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr7	14722075	rs117382294	C	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr7	14758273	rs1997040	C	T	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:117,115:0.50:232
chr7	14758338	rs190698561	G	A	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=1.782;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:31,43:0.58:74
chr7	14775821	rs139628753	TG	T	3138.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	14775824	rs80024169	A	C	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	14881079	rs34838441	CA	C	106.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	15398205	rs146391994	T	TC	712.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr7	15404991	rs112745498	C	G	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	15426956	rs4541808	G	A	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	15430259	rs6942879	A	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr7	15430413	rs150087571	TGTAAA	T	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.511;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr7	15430599	rs35830831	GT	G	231.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;MQ=60.77;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	15458033	rs4469360	C	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	15666230	rs3779406	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	15725797	rs113582077	ATGG	A	12445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.993;QD=17.38;ReadPosRankSum=-0.165;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:377,339:0.47:716
chr7	15726066	rs1050290	G	A	8869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DB;DP=893;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.412;QD=10.00;ReadPosRankSum=-0.290;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:442,445:0.50:887
chr7	15726117	rs33970897	A	ATT	4095.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=11.67;ReadPosRankSum=1.698;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:166,185:0.53:351
chr7	15726129	rs11975534	A	C	3764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=2.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.710;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:167,183:0.52:350
chr7	16129153	rs28379235	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	16129172	rs9691136	A	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	16129214	rs11773533	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr7	16131260	rs1528137	C	T	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	16255602	rs4389828	A	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	16298434	rs1295153	T	C	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.72;ReadPosRankSum=-0.941;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	16298438	rs7799150	T	G	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.69;ReadPosRankSum=-0.772;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr7	16298766	rs5882563	A	AT	149.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	16348059	rs62441885	T	C	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:81,107:0.57:188
chr7	16445673	rs6461252	A	T	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:132,148:0.53:280
chr7	16505054	rs111391406	GA	G	296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.860;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.577;QD=4.43;ReadPosRankSum=1.145;SOR=1.383;set=HC	GT:AD:AF:DP	0/1:40,27:0.40:67
chr7	16505341	rs6945425	T	C	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	16566391	rs6461263	T	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr7	16566645	rs2301968	C	G	4339.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:212,220:0.51:432
chr7	16571973	rs1404173	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.22;ReadPosRankSum=-0.732;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr7	16571976	rs1404172	C	G	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.34;ReadPosRankSum=0.275;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	16572051	rs1404171	C	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr7	16577376	rs6961390	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	16597114	rs6951596	T	C	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.554;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr7	16597174	rs6969347	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.551;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr7	16598655	rs6979816	G	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	16605861	rs11463350	A	AT	845.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr7	16606084	rs1524359	G	A	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:77,106:0.58:183
chr7	16607177	rs11379958	T	TA	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=3.514;QD=3.17;ReadPosRankSum=0.505;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:74,46:0.38:120
chr7	16620928	rs562687	A	G	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	16640358	rs543387	T	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	16640491	rs541797	G	A	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:149,152:0.50:301
chr7	16643467	rs561370	T	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr7	16650427	rs572570	C	G	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:116,107:0.48:223
chr7	16655387	rs11540037	C	T	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:126,85:0.40:211
chr7	16676082	.	TA	T	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.183;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:69,22:0.24:91
chr7	16705132	.	TTG	T	625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DP=368;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.345;QD=2.05;ReadPosRankSum=-0.341;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:250,55:0.18:305
chr7	16713933	rs11465103	A	AT	110.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	16722353	rs818503	A	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr7	16745589	rs1149510	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr7	16793504	rs6975847	A	G	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:165,64:0.28:229
chr7	16793677	rs79436477	C	T	5427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=1072;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.807;QD=5.08;ReadPosRankSum=1.955;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:734,335:0.31:1069
chr7	16793779	rs11405941	G	GC	11842.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr7	16815786	rs2290836	C	G	5121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.826;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:220,250:0.53:470
chr7	16816000	rs2290837	T	C	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:50,77:0.61:127
chr7	16818799	rs6461276	A	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr7	16834444	rs2272246	C	T	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	16834551	rs4719480	C	A	16887.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr7	16834597	rs6842	A	G	7830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.158;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:338,390:0.54:728
chr7	16834690	rs181231647	A	C	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:180,217:0.55:397
chr7	16837404	rs819010	C	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	16872913	rs4719482	G	A	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-1.193;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:65,69:0.51:134
chr7	16899197	rs11798	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr7	16901185	rs4236289	C	T	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	16913394	rs10249749	A	G	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	16913520	rs4472406	G	A	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	16913617	rs4389824	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	17370314	rs186556609	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr7	17854532	rs2723501	G	T	9053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.979;QD=13.47;ReadPosRankSum=1.616;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:238,434:0.65:672
chr7	17854575	rs34649849	G	GAA	4054.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.431;QD=13.12;ReadPosRankSum=-1.963;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:96,213:0.69:309
chr7	17854616	rs2723502	T	C	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:68,100:0.60:168
chr7	17874271	rs4721660	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	17874300	rs4721661	G	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=1.932;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr7	17890413	.	CA	C	49	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=7;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=3;NR=1;PP=49;QD=17.5;SC=AATAATACTTCAAAAAAATAT;SbPval=0.22;Source=Platypus;TC=17;TCF=16;TCR=1;TR=4;WE=17890421;WS=17890403;set=Platypus	GT:AD:AF:DP	0/1:13,4:0.24:17
chr7	17890768	rs62446884	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr7	17908130	rs2389858	T	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:20,61:0.75:81
chr7	17913083	rs5882635	A	AC	3434.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	17962382	rs11397631	G	GA	1738.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:68,93:0.58:161
chr7	17979793	rs3800963	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr7	18066569	rs3800962	C	A	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:390,215:0.36:605
chr7	18067479	rs35708479	ACT	A	13346.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	18624800	rs2073974	T	C	2783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=1.800;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:88,130:0.60:218
chr7	18630208	rs1726610	A	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	18631098	rs36100341	ATG	A	605.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr7	18674435	rs2285431	T	C	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	18688033	rs145105320	A	ATGTG	526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-0.018;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr7	18767343	rs1178127	A	G	6229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=1.396;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:423,341:0.45:764
chr7	18788589	rs1178164	T	C	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:154,118:0.43:272
chr7	18993870	rs2389998	C	T	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=-0.403;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:13,23:0.64:36
chr7	19184746	rs34966908	C	CTCT	18385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=986;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=5.557;QD=19.21;ReadPosRankSum=4.828;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:478,479:0.50:957
chr7	20180425	rs10555255	TAC	T	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=-0.709;SOR=0.261;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr7	20180507	rs55989776	G	GAC	1254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.411;QD=11.73;ReadPosRankSum=-0.778;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:60,47:0.44:107
chr7	20180717	rs3735615	C	G	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:197,146:0.43:343
chr7	20198440	rs975263	G	A	4176.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:301,225:0.43:526
chr7	20201395	rs4721888	G	C	1825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-1.143;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:94,94:0.50:188
chr7	20371395	rs206197	T	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	20403353	rs35420999	AT	A	5744.73	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:178,377:0.68:555
chr7	20418678	rs3735619	C	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:49,11:0.18:60
chr7	20418926	rs1042277	T	C	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:444,194:0.30:638
chr7	20420270	rs17142761	T	A	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:82,38:0.32:120
chr7	20421490	rs2230398	T	C	3506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=768;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=1.255;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:531,229:0.30:760
chr7	20430900	rs10227623	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	20430960	rs3779506	T	C	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=0.620;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:20,36:0.64:56
chr7	20438743	rs6945675	C	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	20444532	rs2074424	C	T	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	20663069	rs111872870	C	T	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-1.630;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:47,45:0.49:92
chr7	20663070	rs77363367	A	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=1.991;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:45,45:0.50:90
chr7	20663096	rs75494098	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr7	20668277	rs78414512	C	A	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:75,147:0.66:222
chr7	20671782	rs76859629	T	G	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=0.903;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:26,46:0.64:72
chr7	20683204	rs7349983	G	T	8347.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:251,407:0.62:658
chr7	20685508	rs11983326	T	G	9281.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr7	20685786	rs11769236	G	A	12394.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr7	20687181	rs2893006	C	T	9861.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.462;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.09;ReadPosRankSum=0.759;SOR=0.262;set=HC	GT:AD:AF:DP	1/1:1,392:1.00:393
chr7	20687332	rs75784515	C	T	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	20687604	rs61732039	A	G	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:43,54:0.56:97
chr7	20689937	rs11973722	T	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr7	20690984	rs79943066	A	G	5138.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:181,233:0.56:414
chr7	20691013	rs3213623	C	T	5673.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:410,301:0.42:711
chr7	20691047	rs34603556	T	C	26824.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=1052;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=2.389;SOR=0.401;set=HC	GT:AD:AF:DP	1/1:2,1038:1.00:1040
chr7	20691219	rs61227829	G	A	6130.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:151,287:0.66:438
chr7	20698077	rs7807360	C	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	20698270	rs2301641	A	G	19158.77	.	AC=2;AF=1.00;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	1/1:0,751:1.00:751
chr7	20698804	rs73278683	C	A	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	20706645	rs12535128	G	T	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	20721084	rs11764760	T	C	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:154,109:0.41:263
chr7	20739632	rs11762180	A	C	2873.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:71,131:0.65:202
chr7	20739672	rs12700230	G	A	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:92,113:0.55:205
chr7	20739774	rs5882753	AT	A	1150.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr7	20739839	rs13229035	A	C	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	20744543	rs2158855	A	C	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,68:0.49:139
chr7	20744563	rs2158854	C	T	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=-0.449;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:52,50:0.49:102
chr7	20762609	rs73085689	T	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr7	20762646	rs62453384	G	T	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:74,88:0.54:162
chr7	20762937	rs62453385	T	C	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr7	20766943	rs11976861	C	G	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr7	20768013	rs10254317	G	A	4858.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:424,273:0.39:697
chr7	20778646	rs6461515	G	A	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr7	20778661	.	G	A	2135.77	.	AC=1;AF=0.500;AN=2;DP=344;set=Intersection	GT:AD:AF:DP	0/1:213,126:0.37:339
chr7	20778773	rs6461516	C	G	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	20778844	rs11380694	A	AG	448.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.92;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	20782474	rs12669866	T	C	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:62,18:0.23:80
chr7	20803107	rs55827389	T	TC	1217.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	20824094	.	G	GAAAA	2189.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DP=813;ExcessHet=3.0103;FS=72.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-1.303;SOR=6.439;set=HC	GT:AD:AF:DP	0/1:610,102:0.14:712
chr7	20824095	.	G	GAGTAAAGAACTCAAAAATAAAATAATTCTCCTCCTCCTCCTCCTTCTCCTCCTCCTTGTTCT	2192.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=19.216;ClippingRankSum=0.000;DP=709;ExcessHet=3.0103;FS=69.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-2.006;SOR=9.087;set=HC	GT:AD:AF:DP	0/1:612,93:0.13:705
chr7	20824940	rs372591893	AGCC	A	2107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-1.301;QD=6.49;ReadPosRankSum=2.093;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:205,120:0.37:325
chr7	21468579	rs39303	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=-0.210;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr7	21468869	rs141294478	TCC	T	4411.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=36.16;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:1,121:0.99:122
chr7	21470513	rs39304	T	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr7	21470536	rs40245	A	T	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	21516627	rs3214203	AT	A	360.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr7	21582963	rs2285943	GA	TT	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;JOINED;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr7	21583329	rs2285946	T	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr7	21584820	rs7781669	A	G	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr7	21599233	rs10950854	C	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=-1.036;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:88,58:0.40:146
chr7	21609623	rs62441676	G	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:89,77:0.46:166
chr7	21628197	rs12670130	A	G	2189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.251;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=3.080;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:309,156:0.34:465
chr7	21628237	rs6963535	C	T	14152.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.52;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr7	21628237	.	CGCATC	TGCATC,TGCATG	1973	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=27;MQ=60.0;NF=96,36;NR=106,40;PP=1973,931;QD=9.93946144825;SC=GGTCAAACTTCGCATCTCTCC;SbPval=0.51;Source=Platypus;TC=202;TCF=96;TCR=106;TR=202,76;WE=21628250;WS=21628227;set=Platypus	GT:AF:DP	0/1:1.00:202
chr7	21628242	rs62441683	C	G	2202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-1.560;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:312,137:0.31:449
chr7	21630982	rs4615458	A	G	3450.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:297,197:0.40:494
chr7	21639801	rs6461585	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr7	21639818	rs6461586	T	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr7	21640405	rs10224537	A	G	4604.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:341,247:0.42:588
chr7	21640618	rs17745898	C	G	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:154,108:0.41:262
chr7	21641218	rs3827657	G	A	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-2.526;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:194,96:0.33:290
chr7	21641269	rs10499531	A	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:84,45:0.35:129
chr7	21646233	.	C	CT	899.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.697;QD=3.66;ReadPosRankSum=2.790;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:147,99:0.40:246
chr7	21654602	rs7779983	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr7	21654970	rs55937657	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	21657130	rs12539987	C	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	21657185	rs8180768	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr7	21658855	rs57208694	A	G	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:152,135:0.47:287
chr7	21658964	rs68184450	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr7	21659554	rs112373177	A	ATTAAT	1364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.662;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:83,38:0.31:121
chr7	21659645	rs56029521	T	C	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-2.449;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:204,108:0.35:312
chr7	21721130	rs11975280	C	G	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:50,111:0.69:161
chr7	21722330	rs74298643	C	T	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=3.013;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:119,70:0.37:189
chr7	21723431	rs55666134	G	A	4354.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:418,251:0.38:669
chr7	21730647	rs7790948	T	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr7	21737973	rs56376598	G	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.38;ReadPosRankSum=-1.150;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr7	21744039	rs2965401	T	G	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:165,82:0.33:247
chr7	21744318	rs72657343	TA	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.908;QD=5.79;ReadPosRankSum=0.456;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr7	21745061	rs1023542	A	G	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:241,160:0.40:401
chr7	21757287	rs2965409	T	C	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	21757636	rs2074760	G	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	21765452	rs12536928	C	T	2916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=0.337;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:85,140:0.62:225
chr7	21765636	rs2965424	T	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	21775153	rs2072219	A	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	21775210	rs2270022	A	G	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	21775443	rs2072221	G	A	17240.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,681:1.00:681
chr7	21778449	rs1109806	C	T	4589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=-0.752;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:219,239:0.52:458
chr7	21779084	rs2906686	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.95;ReadPosRankSum=-0.842;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	21779104	rs933353	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr7	21779278	rs9639393	A	G	4255.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:157,210:0.57:367
chr7	21779331	rs933354	T	C	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:166,126:0.43:292
chr7	21781807	rs1029598	T	C	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=6.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.993;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:152,69:0.31:221
chr7	21789442	rs4355679	T	C	5142.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:218,257:0.54:475
chr7	21805228	.	TCACACACACACACACACA	TCACACACACACACACACACA,T	1363	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.54;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=12;MMLQ=24;MQ=58.49;NF=0,0;NR=9,9;PP=294,1363;QD=33.0;SC=TCAGCCTGCGTCACACACACA;SbPval=1.0;Source=Platypus;TC=20;TCF=0;TCR=20;TR=9,9;WE=21805253;WS=21805218;set=Platypus	GT:AF:DP	0/1:0.45:20
chr7	21813318	rs11374411	A	AT	2431.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	21818486	rs4273751	A	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr7	21824122	rs6965750	G	A	3913.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:342,216:0.39:558
chr7	21826199	rs2072093	G	C	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr7	21828869	rs72657389	A	T	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:271,171:0.39:442
chr7	21847457	rs6969900	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr7	21856151	rs2214326	G	A	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:194,132:0.40:326
chr7	21856390	rs4141347	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr7	21858043	rs10277757	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.91;ReadPosRankSum=-0.313;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	21893993	rs4722064	G	T	3980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=0.002;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:433,240:0.36:673
chr7	21901566	rs4722067	T	C	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-1.512;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:106,70:0.40:176
chr7	21901593	rs12666072	G	A	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:69,103:0.60:172
chr7	21907452	rs5882827	G	GT	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.70;MQRankSum=6.575;QD=8.43;ReadPosRankSum=0.845;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr7	21907458	rs4995598	A	G	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.40;MQRankSum=6.322;QD=8.22;ReadPosRankSum=0.292;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr7	21907696	rs11773744	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	21907722	rs55801704	C	CT	45.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.17;ReadPosRankSum=-0.393;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	21908445	rs67401326	T	C	4111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-0.773;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:85,196:0.70:281
chr7	21924014	rs6461613	A	G	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr7	21932031	rs72658822	T	C	2570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.553;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:107,129:0.55:236
chr7	21932317	rs9639401	T	C	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.45;ReadPosRankSum=1.565;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:9,33:0.79:42
chr7	21939032	rs56333627	C	A	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:348,213:0.38:561
chr7	21939089	rs55714084	C	A	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:173,96:0.36:269
chr7	21941861	rs60370798	ATCTT	A	2844.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr7	21942807	.	A	G	2211.77	.	AC=1;AF=0.500;AN=2;DP=183;set=Intersection	GT:AD:AF:DP	0/1:71,106:0.60:177
chr7	21956405	rs1128250	G	A	4315.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:147,209:0.59:356
chr7	21985347	rs1406706	G	A	9901.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr7	22190131	.	GAA	G,GA	2279.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=0.685;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=1.088;QD=10.00;ReadPosRankSum=-0.038;SOR=0.776;set=HC	GT:AD:AF:DP	1/2:42,89,97:0.39,0.43:228
chr7	22197507	rs7809342	A	G	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr7	22202117	rs12592	G	A	7619.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr7	22202196	rs1981600	T	A	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	22202485	rs1981601	T	C	7535.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	22242370	rs4722110	G	T	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	22259670	rs1859807	C	A	8607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=2.132;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:330,417:0.56:747
chr7	22330700	rs2302001	A	G	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:198,125:0.39:323
chr7	22330862	rs367948789	TA	T	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.281;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:115,48:0.29:163
chr7	22330953	rs2302002	T	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr7	22347876	rs11974052	T	G	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-0.752;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:101,52:0.34:153
chr7	22355166	.	CTA	C	112	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=22;MQ=59.12;NF=0;NR=3;PP=112;QD=39.3333333333;SC=CAATAGCATACTATATATATA;SbPval=1.0;Source=Platypus;TC=15;TCF=1;TCR=14;TR=3;WE=22355175;WS=22355156;set=Platypus	GT:AD:AF:DP	0/1:12,3:0.20:15
chr7	22357716	rs10950897	T	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=-2.109;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr7	22459324	rs2177142	G	A	2639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.263;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:79,131:0.62:210
chr7	22478207	rs2528843	G	T	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:116,189:0.62:305
chr7	22532260	rs62447564	A	G	17488.77	.	AC=1;AF=0.500;AN=2;DB;DP=1290;set=Intersection	GT:AD:AF:DP	0/1:448,842:0.65:1290
chr7	22533452	rs201338533	C	T	3391.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:143,156:0.52:299
chr7	22768572	rs2069840	C	G	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,43:0.46:94
chr7	22857477	rs2286499	T	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr7	22857504	rs2286498	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr7	22857589	rs7782015	T	C	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr7	22861639	rs981792	C	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr7	22861978	rs4354222	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr7	22862131	rs2270108	A	C	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:57,112:0.66:169
chr7	22862183	rs2270107	G	A	10381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.87;ReadPosRankSum=1.289;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:175,260:0.60:435
chr7	22862192	rs2270106	A	G	10949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.64;ReadPosRankSum=1.599;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:212,294:0.58:506
chr7	22896231	rs1608553	G	C	12126.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr7	22896340	rs5882865	AC	A	3505.73	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:223,186:0.45:409
chr7	22896343	rs115918007	C	A	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:301,152:0.34:453
chr7	22896363	rs1608552	G	C	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:227,125:0.36:352
chr7	22985868	rs2286491	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr7	23000783	rs35493358	G	GCTCT	360.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr7	23164526	rs2058275	C	G	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	23195555	rs141774430	CTTTAT	C	5379.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=43.74;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	23227632	.	A	AT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.690;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr7	23240263	rs13243961	G	A	7480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-1.476;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:224,361:0.62:585
chr7	23338929	rs137995797	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	23352512	rs199653	C	A	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	23357321	rs156414	C	T	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:177,114:0.39:291
chr7	23530051	rs62468795	G	A	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=9.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.453;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:36,49:0.58:85
chr7	23530498	rs181551458	A	G	2681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=2.077;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:127,141:0.53:268
chr7	23530800	rs10228640	A	G	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:325,173:0.35:498
chr7	23544964	.	TTAAC	T	232.80	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	23624570	rs227933	G	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	23719766	rs56391241	G	A	4852.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	23719779	rs56359038	G	A	6672.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	23727944	rs7802834	T	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	23727960	rs13237857	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.93;QD=24.62;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	23737795	rs5029444	T	C	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr7	23757162	rs6945306	G	C	7423.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:270,367:0.58:637
chr7	23768907	rs12176610	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr7	23794139	rs34664371	TA	T	790.73	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:150,50:0.25:200
chr7	23794183	rs4722267	A	G	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	23808604	rs61564984	C	A	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=0.802;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr7	23810517	rs7785154	G	A	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.57;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	23810517	.	GGAAATC	AGAAATC,AGAAATG	191	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.43;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=6;MMLQ=27;MQ=60.0;NF=14,8;NR=3,2;PP=83,191;QD=6.92771838513;SC=AAATCACTGCGGAAATCTGTT;SbPval=0.59;Source=Platypus;TC=17;TCF=14;TCR=3;TR=17,10;WE=23810531;WS=23810515;set=Platypus	GT:AF:DP	0/1:1.00:17
chr7	23810523	rs41273996	C	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.968;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr7	23810605	rs1469000	T	C	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:82,49:0.37:131
chr7	23810845	rs1469001	G	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	23811795	rs10263079	T	G	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-1.709;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr7	23811800	rs10247878	G	T	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-1.448;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr7	23823144	rs10950961	A	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,58:0.53:109
chr7	23823355	rs6461737	A	G	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:99,79:0.44:178
chr7	23826066	rs1862068	A	G	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	23854717	rs2390814	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr7	23854838	rs5882915	G	GA	1966.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:140,70:0.33:210
chr7	23872024	rs56362098	C	CTTTG	195.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr7	23872409	rs2214236	T	A	5371.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:448,304:0.40:752
chr7	23872506	rs11770131	T	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:98,41:0.29:139
chr7	24324759	rs16141	T	G	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:151,98:0.39:249
chr7	24324808	rs16140	C	G	7523.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:230,364:0.61:594
chr7	24325009	rs5573	G	A	4373.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:454,249:0.35:703
chr7	24329001	rs113179092	AT	A	246.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr7	24329133	rs5574	C	T	2468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.292;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:303,149:0.33:452
chr7	24703298	rs1053962	G	A	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:89,91:0.51:180
chr7	24718710	rs722218	A	C	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	24719074	rs713571	A	G	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	24742436	rs17149912	T	C	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-0.857;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:115,68:0.37:183
chr7	24742585	rs2074142	C	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	24746022	rs2269812	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr7	24747910	rs2721809	G	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	24749755	rs35529766	TC	T	361.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr7	24756643	rs73082019	A	G	9151.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:232,406:0.64:638
chr7	24756810	rs56166822	A	AGTCCCTCTGCTGAGGGATCCTCTGCTGGGG	1349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=1353;ExcessHet=3.0103;FS=4.680;MLEAC=1;MLEAF=0.500;MQ=61.61;MQRankSum=15.843;QD=2.42;ReadPosRankSum=3.763;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:460,97:0.17:557
chr7	24756951	rs12540919	C	T	10732.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:288,508:0.64:796
chr7	24758645	rs876307	G	T	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr7	24758753	rs754555	C	T	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:115,143:0.55:258
chr7	24758795	rs876305	T	C	6780.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	24758818	rs754554	G	T	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:110,117:0.52:227
chr7	24758852	rs754553	C	T	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:74,89:0.55:163
chr7	24784403	rs2521768	C	T	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:146,122:0.46:268
chr7	24789082	rs2521770	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr7	24789116	rs66692319	C	CAA	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=6.50;ReadPosRankSum=0.479;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr7	24840072	.	C	CTT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=9.881;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-1.278;QD=3.91;ReadPosRankSum=0.065;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr7	24854765	rs1044956	G	A	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:289,195:0.40:484
chr7	24860000	rs6979174	G	C	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:46,62:0.57:108
chr7	24888620	rs757156	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	24891947	rs6461822	C	T	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	25181912	rs2285738	T	C	9574.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr7	25182001	rs2285737	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	25182172	rs2285736	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	25191044	rs12532548	G	A	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	25194618	rs2523073	G	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=4.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.384;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:110,45:0.29:155
chr7	25194665	rs2523072	G	C	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:151,79:0.34:230
chr7	25194753	rs12535348	C	T	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:133,91:0.41:224
chr7	25194857	rs2717899	A	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr7	25218661	rs10642607	A	AAAACAAAC	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr7	25264543	rs55789252	C	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.170;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr7	25264847	rs2717854	T	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr7	25266400	rs2717851	G	A	3274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.898;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:278,178:0.39:456
chr7	25266569	rs3216928	TTAA	T	5015.73	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:278,141:0.34:419
chr7	25267934	rs877834	T	C	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=-0.186;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr7	25267963	rs886354	G	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	25268094	rs877835	C	T	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-1.766;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr7	26232802	rs56684003	CCCTTT	C	2327.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:131,66:0.34:197
chr7	26404071	rs2253569	G	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr7	26576535	rs740182	T	C	3406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=2.182;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:230,179:0.44:409
chr7	26724279	rs212850	T	G	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:61,79:0.56:140
chr7	26778406	rs10951145	A	G	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:123,128:0.51:251
chr7	26883761	rs61646374	T	TA	1244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=2.117;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:95,95:0.50:190
chr7	27134475	rs111259912	T	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:63,29:0.32:92
chr7	27135314	rs10951154	C	T	24554.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=1190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.423;QD=24.05;ReadPosRankSum=0.460;SOR=0.563;set=HC	GT:AD:AF:DP	1/1:44,977:0.96:1021
chr7	27141267	rs706016	C	T	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.70;SOR=2.085;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	27141657	rs2428431	C	G	10030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=1489;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-1.448;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:905,562:0.38:1467
chr7	27147451	rs59078276	TA	T	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.832;QD=10.92;ReadPosRankSum=0.117;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:8,35:0.81:43
chr7	27169093	rs2158218	T	G	15888.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr7	27169617	rs6943542	T	C	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	27169934	rs10251056	A	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	27170145	rs6944345	T	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	27192088	rs145281130	A	AGGCCT	1552.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:73,44:0.38:117
chr7	27196069	rs2301720	A	C	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	27196113	rs2301721	C	T	8511.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr7	27203139	rs7810502	G	A	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	27209003	.	G	A	3182.77	.	AC=1;AF=0.500;AN=2;DP=361;set=Intersection	GT:AD:AF:DP	0/1:194,160:0.45:354
chr7	27238691	rs2071265	C	G	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	27239298	.	CGCG	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.257;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr7	27278804	rs144734005	C	CACGGCCTGGAAGATG	724.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=1.683;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr7	27279191	rs3801321	T	G	1930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.439;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:81,96:0.54:177
chr7	27283990	rs201584461	GC	G	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:69,21:0.23:90
chr7	27497389	rs56098493	G	A	4472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.30;MQRankSum=-4.587;QD=8.82;ReadPosRankSum=1.137;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:266,241:0.48:507
chr7	27566053	rs12700813	G	C	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	27578167	rs9639553	C	G	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	27581495	rs6462029	T	C	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	27582783	rs978447	G	A	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	27668860	rs6415252	C	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	27671899	rs7779990	T	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	27702390	rs11550134	C	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr7	27807441	rs7807729	G	A	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.08;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	27807441	.	GTGAAAATTG	ATGAAAATTC,ATGAAAATTG	65	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=1;MMLQ=27;MQ=60.0;NF=5,7;NR=2,5;PP=65,25;QD=16.9239821232;SC=TATAAAGAATGTGAAAATTGC;SbPval=0.84;Source=Platypus;TC=12;TCF=7;TCR=5;TR=7,12;WE=27807458;WS=27807431;set=Platypus	GT:AF:DP	0/1:0.58:12
chr7	27807450	rs7807738	G	C	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=1.087;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr7	27807589	rs7790914	T	C	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	27807650	rs7808062	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-0.632;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr7	27835864	rs79462961	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.979;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr7	27885969	rs74847888	CGT	C	646.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	27886011	rs141603370	C	CATATACGTATACGTGTAT	1361.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr7	27886171	rs6462054	A	G	9990.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr7	28111321	rs74756543	G	C	7275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=911;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=-0.506;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:508,385:0.43:893
chr7	28662583	rs41289	C	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	28676906	rs41309	A	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	28849113	.	C	G	137.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	28857606	rs12531253	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	28858456	rs10951205	A	G	2158.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.10;ReadPosRankSum=-1.703;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:2,84:0.98:86
chr7	28996220	rs1006521	G	A	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	28996944	rs740250	T	C	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	28997497	rs67010340	GC	G	7119.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	28997596	rs5883174	G	GC	1685.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	29070209	rs7313	G	A	9212.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr7	29103867	rs644763	T	C	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	29103944	rs34641639	A	AT	846.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	29111620	rs317719	A	C	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,130:0.98:132
chr7	29126046	rs323192	T	C	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr7	29186256	rs245880	A	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr7	29186576	rs245881	A	G	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:120,160:0.57:280
chr7	29394048	rs757327	T	C	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr7	29394220	rs66659316	CTT	C	2824.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:164,129:0.44:293
chr7	29394435	rs10215545	C	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr7	29407518	rs142914048	TTC	T	802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.586;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:278,56:0.17:334
chr7	29437867	rs7799981	T	C	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	29439641	rs12669481	G	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	29520042	rs1476991	G	A	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:92,117:0.56:209
chr7	29544298	rs200507124	CT	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.553;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:74,28:0.27:102
chr7	29546763	rs11388362	A	AT	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.062;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr7	29552463	rs1420145	C	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr7	29605975	rs2302618	C	G	10171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DB;DP=964;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=1.720;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:449,510:0.53:959
chr7	29606288	rs10271996	C	T	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:65,95:0.59:160
chr7	29688827	rs1641209	T	C	3505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.394;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.359;QD=10.34;ReadPosRankSum=-0.624;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:163,176:0.52:339
chr7	29688886	.	G	T	2664.77	.	AC=1;AF=0.500;AN=2;DP=294;set=Intersection	GT:AD:AF:DP	0/1:154,139:0.47:293
chr7	29688915	rs1728643	G	A	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:110,125:0.53:235
chr7	29689018	rs1641210	T	C	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr7	29720404	rs850108	A	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-5.736;QD=0.84;ReadPosRankSum=0.054;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:217,39:0.15:256
chr7	29771533	rs147432542	TGAA	T	2581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=3.686;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.846;QD=15.65;ReadPosRankSum=0.275;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:95,70:0.42:165
chr7	29771546	.	CTT	C,CT	3598.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=1.382;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.398;QD=18.36;ReadPosRankSum=-1.003;SOR=0.465;set=HC	GT:AD:AF:DP	1/2:10,109,77:0.56,0.39:196
chr7	29771601	rs77356382	G	A	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:153,141:0.48:294
chr7	29771744	rs73299545	T	C	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr7	29781927	rs850098	T	A	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:256,193:0.43:449
chr7	29915593	rs2301922	G	C	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	29924221	rs13310795	T	C	10873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=1184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.135;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:605,551:0.48:1156
chr7	29924384	rs75418804	C	T	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:85,68:0.44:153
chr7	29944062	rs4722959	A	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	30113862	rs149548208	T	TTG	1370.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	30177095	rs6954451	G	T	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	30325043	.	C	T	136.84	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;QD=22.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	30329337	.	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.111;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=5.065;MLEAC=1;MLEAF=0.500;MQ=53.50;MQRankSum=-5.779;QD=3.31;ReadPosRankSum=-5.139;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:68,21:0.24:89
chr7	30538399	rs71532977	C	G	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	30538651	rs38409	T	C	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	30540399	rs38410	G	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	30544360	rs38414	G	A	12078.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,466:1.00:466
chr7	30634661	rs1049402	C	G	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	30635600	rs10265589	C	T	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	30643069	rs1558064	C	A	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	30651938	rs1986756	G	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	30662237	rs10249885	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	30673345	rs2240401	C	T	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	30694260	rs3779250	C	T	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	30705105	rs8192496	G	A	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	30728908	rs255100	A	T	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	30739409	rs255117	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr7	30739525	rs255119	G	A	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	30739691	rs107540	A	G	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	30805811	rs71830535	TCA	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.769;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr7	31015634	.	C	T	843.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	31121501	rs2302475	T	C	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	31125082	rs11410563	A	AG	1990.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	31132235	rs112436908	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.121;QD=0.74;ReadPosRankSum=0.602;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:88,30:0.25:118
chr7	31135471	rs2267734	G	A	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	31378933	rs2233404	A	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	31592733	rs7811042	C	A	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	31594166	rs2286710	C	T	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr7	31594258	rs12155214	G	T	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	31617733	rs6945679	T	C	6350.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	31618008	rs10252720	A	G	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	31622596	rs77599835	C	T	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	31681765	rs10239388	C	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	31682453	rs4141001	C	T	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	31683410	rs10247620	G	A	18730.77	.	AC=2;AF=1.00;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr7	31683610	rs38398	G	A	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	31691697	rs3735424	T	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	31848706	rs3213709	A	G	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	31855420	rs1860789	A	G	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	31855569	rs2302450	G	A	14061.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr7	31855578	rs1860790	G	A	13711.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr7	31890104	rs2072430	G	A	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	31890104	.	GAT	AAC	571	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=26;MQ=60.0;NF=11;NR=1;PP=571;QD=52.0389895719;SC=GATTGAAGCTGATCAGACTGA;SbPval=0.64;Source=Platypus;TC=12;TCF=11;TCR=1;TR=12;WE=31890114;WS=31890094;set=Platypus	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	31890106	rs917756	T	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.71;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	32110115	rs30598	C	G	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	32209359	rs758318	A	G	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	32209425	rs977625	A	G	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	32209459	rs977626	C	T	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	32248910	rs10486503	G	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	32248984	rs10951324	G	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	32249216	rs2240676	A	G	104.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	32527009	rs7800049	G	A	8955.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr7	32528796	rs41276006	T	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	32529005	rs182917341	T	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	32529622	rs12532994	A	G	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	32529936	rs1584614	G	C	10254.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr7	32591135	rs3213972	G	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	32591158	rs3213973	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	32593234	rs10717407	CT	C	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:4,30:0.88:34
chr7	32593271	rs6961786	G	A	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	32594278	rs2290210	A	G	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	32598087	rs12673921	G	A	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	32598138	rs12673881	C	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	32598359	rs1562828	G	A	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	32598524	rs1466144	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	32609565	rs2305320	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	32613020	rs1993050	A	G	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	32615553	rs6462381	C	T	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	32619653	rs6462383	T	A	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	32620325	rs35499747	T	TTG	621.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.487;QD=29.57;ReadPosRankSum=1.386;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr7	32623250	rs1817046	C	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	32660758	rs2302066	C	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.98;QD=25.49;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	32772477	rs2923266	C	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr7	32772520	rs184276402	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-4.809;QD=3.96;ReadPosRankSum=3.239;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:92,37:0.29:129
chr7	32909182	rs752730	G	A	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr7	33016120	rs3750116	G	T	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	33028487	rs35727868	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	33059407	rs2392209	A	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	33060946	rs3750117	A	G	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	33102462	rs13228639	C	T	761.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.912;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.81;ReadPosRankSum=0.275;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr7	33102514	rs13228827	G	A	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	33134883	rs150987618	T	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.702;MLEAC=1;MLEAF=0.500;MQ=46.65;MQRankSum=-3.694;QD=9.07;ReadPosRankSum=-0.891;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:40,27:0.40:67
chr7	33136983	rs6462460	G	A	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	33139147	rs17472556	G	A	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	33186065	rs77462109	TT	GA	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	33186082	rs1969575	C	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	33192502	rs17169881	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	33385852	rs6974593	C	T	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	33388618	rs9785054	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	33388713	rs11773504	G	A	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	33388891	.	C	T	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.89;ReadPosRankSum=-1.218;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:9,39:0.81:48
chr7	33391089	rs35557465	G	A	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	33392380	rs11769616	A	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	33977125	.	G	GGTGTGT	381.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.36;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chr7	34009946	rs10265207	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	34192762	rs6968741	G	C	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	34697982	rs887020	A	G	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	34818113	rs324981	A	T	8010.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr7	34819123	rs62462890	T	A	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	34867255	rs5883474	C	CA	552	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr7	35289889	rs5883498	C	CA	1115.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	35289941	rs5883499	C	CA	514.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	35414453	rs17608167	T	C	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	35414769	rs2553113	C	T	12904.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.74;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr7	35414772	rs2553114	C	T	12849.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.57;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	35673799	rs2305333	T	C	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	35678214	rs3816422	C	T	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	35709772	rs3779235	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	35709842	rs3779234	C	T	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	35840898	rs59008252	G	GC	2537.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	35851738	rs57121305	CA	C	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-1.087;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr7	35928551	rs6945909	A	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	36124292	rs1986593	G	A	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	36320821	rs196586	G	A	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	36327410	rs196595	A	G	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	36338749	rs196613	T	C	10292.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr7	36338841	rs196614	T	C	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	36370499	rs196659	C	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	36370555	rs196660	G	T	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	36465606	rs200742993	C	CT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-1.701;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr7	36552729	rs59476355	A	AT	5199.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	36552790	rs57543920	G	GT	5394.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	36561469	rs6462681	G	T	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	36569907	rs3735393	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	36570084	.	C	A	466.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr7	36580192	rs150931610	GCA	G	51.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr7	36656147	rs2727818	A	T	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	36656205	rs13235549	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	36660502	.	CATGA	C	25	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.4999;HP=1;HapScore=2;MGOF=5;MMLQ=24;MQ=60.0;NF=0;NR=1;PP=25;QD=34.0;SC=CAGTTTCATGCATGAATGAAT;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=1;WE=36660513;WS=36660492;set=Platypus	GT:AD:AF:DP	0/1:6,1:0.14:7
chr7	36661423	rs2727822	T	C	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	36698684	rs6959295	C	T	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	36726476	rs58947801	CGTGTGT	CGT,C	1046.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=43;set=Intersection	GT:AF:DP	1/1:1.00:26
chr7	36729757	rs7790095	T	C	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	36729822	rs11427708	C	CA	2923.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=23.77;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	36910100	rs144342928	AT	A	5742.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	36934448	rs6462722	A	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	37172594	rs5883589	AT	A	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=-1.001;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	37252929	rs7809365	T	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	37253093	rs7809548	T	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	37256392	rs7806425	G	A	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	37257580	rs6462745	C	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	37262140	rs2302668	C	T	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr7	37298800	rs2717968	C	T	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	37299056	rs2717969	C	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	37355590	rs11383031	C	CT	1483.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	37889786	rs10271309	A	G	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	37901581	rs2249451	G	A	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	37903853	rs3816419	A	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	37903904	rs3816418	C	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	37904065	rs3841582	TAAC	T	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	37907304	rs10250905	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	37933983	rs10260487	C	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	37947164	rs1802073	G	T	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	37953720	rs2248554	C	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	37953840	rs1132552	C	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	37960955	rs4723716	T	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	37961001	rs10248138	C	A	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	38268224	rs7795457	G	A	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	38282130	rs35917252	G	GGT	2838.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:37,129:0.78:166
chr7	38282166	rs2009434	T	G	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	38284649	rs112543808	A	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-1.556;QD=11.17;ReadPosRankSum=-0.109;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:28,35:0.56:63
chr7	38284794	rs2008893	C	T	6398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.402;QD=18.93;ReadPosRankSum=0.852;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:168,170:0.50:338
chr7	38284804	rs4629747	T	C	6140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-2.843;QD=17.85;ReadPosRankSum=2.070;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:188,156:0.45:344
chr7	38284808	rs4434531	A	C	5992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=2.310;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.504;QD=17.42;ReadPosRankSum=1.072;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:186,158:0.46:344
chr7	38284834	rs67534383	A	G	4985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=3.427;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-5.847;QD=13.81;ReadPosRankSum=0.404;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:212,149:0.41:361
chr7	38284854	rs73360756	C	T	4535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=4.458;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-6.389;QD=14.22;ReadPosRankSum=-0.184;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:193,126:0.39:319
chr7	38284902	rs200052170	A	G	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.069;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=40.989;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-8.104;QD=3.43;ReadPosRankSum=-3.561;SOR=4.073;set=HC	GT:AD:AF:DP	0/1:125,29:0.19:154
chr7	38288816	rs35633605	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	38289121	rs1053756	C	T	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.31;QD=25.92;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	38292857	rs12701617	G	A	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.76;QD=27.97;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	38292890	rs10267672	T	C	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.16;QD=21.98;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	38292926	rs12701618	C	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.56;QD=24.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	38295958	rs34053049	C	T	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr7	38296130	rs6462828	T	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	38299872	rs199623168	C	T	31.74	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.64;QD=15.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	38301741	rs2392542	T	A	7145.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=25.80;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	38304926	rs3901405	C	T	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	38305043	rs1053760	T	C	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.23;QD=28.52;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	38305340	rs2302343	A	G	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.25;QD=30.49;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	38309102	rs2075010	A	C	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.18;QD=25.02;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	38315971	rs35130602	C	T	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	38331416	rs76807453	C	T	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	38356849	rs56794613	C	T	7407.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr7	38388661	rs371389885	C	T	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=24.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	38388773	rs13227721	G	A	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.42;QD=25.10;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	38388910	rs113354949	C	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	38393712	rs2215951	CA	TG	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	38398564	rs1810377	AG	GC	8701.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	38402496	rs2735118	A	G	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr7	38402781	rs2011898	A	G	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	38402943	rs11495989	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	38407580	rs112349801	A	G	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=25.12;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	38431644	rs79759611	G	GC	850.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	38457688	rs10247761	C	A	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	38462154	.	G	GTATCTATC	351.74	.	AC=2;AF=1.00;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	38467842	rs1544636	A	G	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	38467923	rs6958300	A	G	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr7	38468463	rs2267808	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	38468695	rs2392572	C	T	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	38469039	rs2215955	C	A	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	38469636	rs10253674	G	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	38500782	rs12670885	G	A	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	38504905	rs722336	C	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	38505014	rs722335	A	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	38505025	rs722334	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	38514868	rs41279585	G	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	38530568	rs2043786	G	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	38530807	rs3837078	T	TA	1115.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	38533972	rs3735089	A	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	38543095	rs3832480	C	CG,CGG	129.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=32;set=Intersection	GT:AF:DP	0/1:0.43:23
chr7	38543103	rs10225047	T	G	506.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.12;ReadPosRankSum=-1.574;SOR=3.442;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr7	38543371	rs6946268	C	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	38725804	rs11980087	C	T	8409.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr7	38726473	rs17508140	T	C	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	38780883	rs6951429	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	38780924	rs6975410	T	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	38781018	rs3779128	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	38782951	rs10254567	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	38785062	rs28520398	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	38813711	rs976350	C	T	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	38869708	rs7790054	C	T	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	38908876	rs3735346	T	C	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	39125413	rs1950001	T	G	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	39243750	rs4507668	A	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	39243963	rs35792719	T	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	39243978	rs35489214	A	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	39246987	rs113205706	G	A	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	39472669	rs2302125	C	T	7118.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr7	39472708	rs2302123	A	G	11646.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.046;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.098;QD=24.89;ReadPosRankSum=2.149;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:2,466:1.00:468
chr7	39472846	rs2302122	G	A	11524.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr7	39490982	rs7801100	A	C	170.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	39500352	rs885689	C	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	39649055	rs4723883	A	G	114.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	39649275	rs4723884	G	A	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	39649456	rs4723885	G	C	8526.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.68;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr7	40108855	rs11760551	C	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	40314165	rs12669315	G	A	8008.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr7	42005678	rs929387	G	A	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	42007071	rs4724083	C	T	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	42064852	rs846273	C	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	42187734	rs373203694	GCACA	G	149.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr7	42262935	rs199612920	G	GA	533.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=0.249;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr7	42950640	rs643138	C	T	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	42951515	rs647117	G	A	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	42957465	rs71008875	ATT	A	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	42970733	rs619664	C	T	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	42974827	rs601057	A	C	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	42976789	rs630191	A	G	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr7	42977091	rs631132	G	A	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	43400656	.	CGTGTGTGTGT	C,CGTGT	1028.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=36;set=Intersection	GT:AF:DP	1/2:0.23,0.77:26
chr7	43484310	rs73098706	T	C	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	43485248	rs6960889	A	G	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	43495878	rs3214631	C	CT	1498.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:4,64:0.94:68
chr7	43496138	rs2304331	T	C	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	43506015	rs2304330	C	A	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	43506059	rs2304329	A	G	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	43506158	rs2304328	T	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	43540782	.	CT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.162;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr7	43548832	rs74368380	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	43664280	rs1044141	A	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	43664477	rs15866	T	C	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	43684803	rs2302031	C	G	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	43687296	rs2240516	C	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	43810695	rs699511	A	G	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	43810764	rs699512	G	A	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	43827414	rs849165	G	A	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	43846603	rs7738	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	43908866	rs2730608	C	T	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	43916727	rs2232108	T	G	8676.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr7	43917013	rs2232105	G	A	12303.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.29;ReadPosRankSum=1.738;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:2,466:1.00:468
chr7	43917274	rs2232103	A	G	11293.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr7	43945982	rs200939452	G	GC	125	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	43982341	rs2074728	G	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	43982482	rs2074727	A	C	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	43988496	rs147685351	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	44027348	rs2330943	A	G	4277.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.32;QD=25.62;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	44081323	rs3099757	C	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr7	44084292	rs4430012	C	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.52;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	44097696	rs6968228	T	C	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	44145910	rs1558469	C	T	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	44147485	rs2537188	C	A	7526.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	44147567	rs58863562	C	CG	7137.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	44148388	rs2075071	C	T	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	44148553	rs2595701	A	G	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	44152119	rs11377645	A	AG	2054.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	44153082	rs67670401	G	GC	1120.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	44153115	rs34515254	G	GC	1595.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	44154865	rs5883885	A	AG	4802.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	44157770	rs34484835	G	GC	1512.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	44180079	rs5883888	A	AG	3097.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.76;QD=34.42;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	44247258	rs3824065	C	T	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	44250279	rs3837149	GCA	G	253.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	44250826	rs2072439	G	A	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	44259554	rs149624128	T	TG	1469.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	44259561	rs138799733	G	GC	1506.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	44259706	rs1065359	G	A	6864.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr7	44259871	rs1127065	C	T	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	44266077	rs10951758	G	A	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	44268785	rs917791	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	44270764	rs13438284	A	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	44272314	rs5883896	G	GC	255.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	44281475	rs2075073	T	A	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	44281702	rs35663812	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	44282369	rs35452037	T	C	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	44282868	rs11542228	A	G	4989.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	44282877	rs11542227	A	G	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.97;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	44284564	rs2075069	A	G	9753.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr7	44284724	rs62459103	C	T	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	44364862	rs111242776	C	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	44442296	rs1473114	A	C	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr7	44444122	rs11550029	G	A	7650.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	44524953	rs117508762	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	44530193	rs307007	T	G	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr7	44553238	rs217434	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	44555406	rs10264715	G	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	44555573	rs217428	T	G	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	44561600	rs217421	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	44561901	rs217420	A	C	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	44715476	.	C	CA	76.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.47;ReadPosRankSum=-0.135;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr7	44802401	rs4720479	A	C	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	44839616	rs6463247	C	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	44839997	rs60958673	C	CT	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=0.619;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:26,38:0.59:64
chr7	44862641	rs2012932	T	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	44869537	rs1297837	C	T	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	44874966	rs41280660	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	44880684	rs138616116	CA	C	2518.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	44924627	rs6966024	A	C	14383.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,549:1.00:549
chr7	45004063	rs7792760	T	C	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	45005795	rs2269969	G	A	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	45009341	rs3735485	A	G	2851.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.048;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=1.625;SOR=0.279;set=HC	GT:AD:AF:DP	1/1:1,114:0.99:115
chr7	45010371	rs62461372	C	G	10678.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr7	45015107	rs61738857	G	A	10295.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr7	45016621	rs61739531	C	T	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	45040063	.	G	GT	198.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=24.85;ReadPosRankSum=0.887;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr7	45112902	rs10272243	T	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	45124008	rs7777835	T	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	45128324	.	G	C	252.77	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	45141785	rs7792895	G	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	45197433	rs67477213	G	A	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	45223018	rs11982639	C	G	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	45225609	rs66534022	GGTGTATGT	G	1933.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	45225708	rs13222185	A	G	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=25.06;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	45225883	rs12702124	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	45697295	rs2461131	C	G	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=1.396;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	45697295	.	CCT	GCC	2149	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=37;NR=15;PP=2149;QD=42.3551514397;SC=CAAGGTGGGCCCTAGCCCCAC;SbPval=0.5;Source=Platypus;TC=57;TCF=41;TCR=16;TR=52;WE=45697305;WS=45697285;set=Platypus	GT:AD:AF:DP	1/1:5,52:0.91:57
chr7	45697297	rs2471231	T	C	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=1.386;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	45703971	rs1042009	G	A	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	45743403	rs2461114	G	A	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	45932669	rs4619	A	G	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	45954692	rs10255707	T	C	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	45957172	rs55719014	TA	T	103.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	45960645	rs2854746	G	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	46732428	rs700747	A	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	46736733	rs71003346	GA	G	856.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	47317510	rs3750163	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	47319723	rs4720590	C	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	47323456	rs3750164	A	G	6461.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr7	47436558	rs2177795	A	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	47451295	rs834607	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	47451572	rs17544073	C	T	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	47481602	rs11763044	G	A	7764.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr7	47546375	rs334496	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr7	47546547	rs334497	G	A	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-2.535;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:95,32:0.25:127
chr7	47568718	rs10261525	C	T	5732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-1.118;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:229,284:0.55:513
chr7	47578772	rs334506	T	C	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	47596534	rs6954946	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr7	47596775	rs615300	C	T	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:93,58:0.38:151
chr7	47835027	rs9719534	A	G	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:73,117:0.62:190
chr7	47840510	rs1466203	T	C	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	47847679	rs1074780	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	47847751	rs3734931	G	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr7	47853397	rs4595031	G	A	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:135,120:0.47:255
chr7	47853498	rs6463449	C	T	12420.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr7	47859239	rs3757379	C	A	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:55,85:0.61:140
chr7	47860510	rs17659820	C	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr7	47860796	rs151245497	GT	G	1228.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:101,70:0.41:171
chr7	47868937	rs76381579	T	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr7	47869038	rs7788583	T	C	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:118,80:0.40:198
chr7	47869751	rs6463451	C	T	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr7	47872845	rs921634	A	G	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:120,171:0.59:291
chr7	47884555	rs13237611	A	G	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	47884829	rs1980279	C	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr7	47904737	rs1554495	G	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.31;ReadPosRankSum=-0.325;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	47913459	rs62447062	T	C	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,83:0.58:142
chr7	47913579	rs1470859	T	C	20540.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.61;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,561:1.00:561
chr7	47913580	rs73105162	G	A	6386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=1.169;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:240,313:0.57:553
chr7	47913615	rs17131867	G	A	5921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=0.160;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:217,291:0.57:508
chr7	47913737	rs73105163	A	G	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,51:0.63:81
chr7	47915543	rs12113549	T	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr7	47915651	rs4724654	G	C	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:170,165:0.49:335
chr7	47915677	rs4724655	A	G	4976.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:242,249:0.51:491
chr7	47915890	rs4724656	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr7	47916995	rs2348662	T	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr7	47920225	rs17131893	G	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,50:0.70:71
chr7	47920298	rs17131896	G	C	3046.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:118,146:0.55:264
chr7	47920345	rs62447081	G	A	4259.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:144,208:0.59:352
chr7	47920450	rs17131899	A	G	2861.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:80,135:0.63:215
chr7	47920482	rs78574665	AG	GT	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;JOINED;set=Intersection	GT:AD:AF:DP	0/1:52,67:0.56:119
chr7	47920499	rs62447082	A	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr7	47920583	rs9691249	G	C	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	47921682	rs10951936	A	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr7	47921785	.	T	TCG	383.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.68;ReadPosRankSum=0.955;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr7	47921786	.	GCT	G	383.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.44;ReadPosRankSum=1.156;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr7	47921798	rs12702396	C	A	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.16;ReadPosRankSum=-0.094;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	47921824	rs12702397	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	47943953	rs11766212	C	T	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:176,159:0.47:335
chr7	47947863	rs1474283	T	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	47968927	rs2686817	C	A	16111.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.618;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.03;ReadPosRankSum=1.350;SOR=0.578;set=HC	GT:AD:AF:DP	1/1:1,618:1.00:619
chr7	47971575	rs885337	A	G	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	47976287	rs2708878	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	47979922	rs2708913	A	G	1855.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-1.567;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:19,116:0.86:135
chr7	48004962	rs1056663	C	T	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	48005122	rs2037483	G	A	7483.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr7	48009018	rs953595	AA	GT	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	48010978	rs2708864	T	C	5960.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	48017965	rs2242477	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	48017989	rs2242478	T	C	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	48018455	rs2242479	T	A	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	48035893	rs2708899	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	48046714	rs1574242	G	A	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:55,90:0.62:145
chr7	48086077	rs2708912	C	T	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	48086161	rs10233232	T	C	9022.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chr7	48089394	rs909059	T	C	7794.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr7	48089542	rs2686788	T	C	11016.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr7	48089571	rs2708890	C	A	7302.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	48092486	rs2686791	T	C	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	48092847	rs2686792	C	A	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	48211301	rs141832114	C	T	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	48232530	.	AT	A	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=1.249;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr7	48237802	rs2188	C	T	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	48269679	rs60553397	G	C	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	48285485	rs1880738	C	T	9122.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:2,358:0.99:360
chr7	48312674	rs1358066	G	A	6774.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr7	48315796	rs1880736	C	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	48318811	rs2222648	C	T	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	48335265	rs10280046	C	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.047;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	48336844	rs6583546	C	T	2359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=1.716;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:192,129:0.40:321
chr7	48390213	rs73323764	G	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr7	48391642	rs4145714	G	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr7	48414073	.	G	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-2.041;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:86,13:0.13:99
chr7	48415892	rs2163938	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	48431389	rs113609560	T	TA	465.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr7	48431762	rs7780299	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr7	48443570	rs6978753	G	A	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	48450097	rs62447267	C	T	4897.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:457,277:0.38:734
chr7	48450157	rs17548783	T	C	33642.77	.	AC=2;AF=1.00;AN=2;DB;DP=1299;set=Intersection	GT:AD:AF:DP	1/1:0,1294:1.00:1294
chr7	48450289	rs62447268	C	G	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:198,142:0.42:340
chr7	48451939	rs1865195	T	C	1545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=1.789;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:85,77:0.48:162
chr7	48452200	rs7789493	G	A	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:197,107:0.35:304
chr7	48467355	rs13233421	T	C	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:131,105:0.44:236
chr7	48467581	rs13243091	T	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr7	48467634	rs34541457	T	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr7	48467653	rs34529024	GAA	G	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-1.376;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr7	48506416	rs4917151	G	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	48511297	rs7810026	T	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.864;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr7	48520780	rs4472462	A	T	1613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-0.841;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:168,91:0.35:259
chr7	48522845	rs1918584	C	G	85.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.25;ReadPosRankSum=-2.189;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	48522846	rs1918585	A	G	85.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.25;ReadPosRankSum=-2.189;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr7	48545976	rs6583448	A	G	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr7	48684185	rs150970044	CTT	C	724.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.71;ReadPosRankSum=0.606;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr7	48886140	rs62454384	T	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.770;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=8.757;MLEAC=1;MLEAF=0.500;MQ=53.39;MQRankSum=-11.771;QD=0.53;ReadPosRankSum=-3.350;SOR=1.541;set=HC	GT:AD:AF:DP	0/1:369,54:0.13:423
chr7	48886193	rs3814470	G	A	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=53.11;MQRankSum=-9.894;QD=4.14;ReadPosRankSum=0.709;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:338,131:0.28:469
chr7	48886383	rs146940015	G	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.65;QD=29.48;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	48886487	rs62454385	T	C	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.05;QD=26.56;SOR=1.350;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	48886607	rs28657654	A	G	3250.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:189,173:0.48:362
chr7	48886648	rs71537796	G	A	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.55;QD=26.47;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	48886746	rs4320498	C	T	4524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.06;MQRankSum=-6.823;QD=11.75;ReadPosRankSum=0.701;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:162,223:0.58:385
chr7	48887548	rs4404869	G	C	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:129,153:0.54:282
chr7	48964172	rs6945680	G	C	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	48964209	rs58317831	TG	T	4832.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	48964255	rs6968293	A	C	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	48964322	rs11767646	G	T	12249.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr7	48964751	rs61731347	G	A	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-0.003;QD=5.76;ReadPosRankSum=-1.271;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:316,162:0.34:478
chr7	48965000	rs10259692	G	A	8603.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:2,319:0.99:321
chr7	48965141	rs62456439	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.014;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=4.168;MLEAC=1;MLEAF=0.500;MQ=46.62;MQRankSum=-3.911;QD=0.80;ReadPosRankSum=-1.801;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:205,38:0.16:243
chr7	48965427	rs145470654	A	G	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.10;QD=42.93;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	48965435	rs202081194	C	T	3191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=44.06;MQRankSum=1.728;QD=17.73;ReadPosRankSum=-3.247;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:41,139:0.77:180
chr7	49815390	rs769604	C	G	2729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=1.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-1.253;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:210,142:0.40:352
chr7	49951519	rs55947532	G	GCACACACACACACA	1709.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	49951544	rs7792519	T	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:4,47:0.92:51
chr7	50023122	rs988392	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	50070921	rs1351691	C	G	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	50121269	rs3807322	G	A	124.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr7	50135632	rs62447817	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr7	50144059	rs3034461	T	TTA	2532.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.255;QD=35.67;ReadPosRankSum=0.556;SOR=0.489;set=HC	GT:AD:AF:DP	1/1:2,69:0.97:71
chr7	50156916	rs6959792	C	G	6371.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	50169508	rs1456900	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	50169595	rs1456899	T	A	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	50173777	rs998928	A	G	4872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-1.881;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:139,236:0.63:375
chr7	50175654	rs12718244	G	A	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:171,100:0.37:271
chr7	50175681	rs12672941	C	T	3241.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:83,155:0.65:238
chr7	50180972	rs1456908	C	T	2865.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:451,189:0.30:640
chr7	50191216	rs10260654	G	T	4224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=-0.349;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:101,191:0.65:292
chr7	50198626	rs4917120	T	C	14865.73	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr7	50435617	rs11766800	A	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr7	50436033	rs10899750	A	G	4756.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:105,218:0.67:323
chr7	50512857	rs10230307	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.53;ReadPosRankSum=1.559;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr7	50512929	rs10230343	C	A	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-1.777;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:33,54:0.62:87
chr7	50537677	rs11378977	C	CA	447.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr7	50537983	rs3757472	A	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr7	50544269	rs5884156	AG	A	1935.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr7	50545191	rs4992502	C	A	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:89,116:0.57:205
chr7	50547584	rs11575457	A	C	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.864;QD=11.07;ReadPosRankSum=-2.645;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:57,79:0.58:136
chr7	50547661	rs11575456	AGCCCT	A	1721.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr7	50566671	rs3807562	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	50566762	rs2876829	C	T	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.913;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-3.797;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:91,65:0.42:156
chr7	50596864	rs3735273	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr7	50597056	rs6950777	G	A	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:175,125:0.42:300
chr7	50611735	rs6264	T	C	6905.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr7	50671481	rs7456867	C	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	50672907	rs4947709	T	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	50673029	rs4947710	T	C	14888.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr7	50685602	rs11770199	T	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr7	50685625	rs2240498	A	C,T	1719.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=75;set=Intersection	GT:AF:DP	1/2:0.39,0.61:70
chr7	50694457	rs1468450	A	G	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	50742118	rs2715128	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	50742180	rs1800504	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr7	50799889	rs2074777	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr7	50800100	.	G	GA	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.455;QD=2.47;ReadPosRankSum=-0.517;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:127,47:0.27:174
chr7	50800169	rs2108350	T	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr7	51085127	rs3214180	A	AT	7453.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr7	51093013	rs2240087	A	T	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr7	51096974	rs2240090	C	T	14154.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr7	51097063	rs10230120	T	G	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr7	51097255	rs61739178	G	A	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:115,136:0.54:251
chr7	51153024	rs59837144	GTACAATCAAAGTACTTTGTACCTATGAAGT	GACAATCAAAGTACTTTGTACCTATGAAGT,G	2634.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=169;set=Intersection	GT:AF:DP	0/1:0.49:144
chr7	51153027	.	CAATCAAAGTACTTTGTACCTATGAAGTACAAAGA	C	2622.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.906;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=16.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.73;ReadPosRankSum=-1.506;SOR=1.854;set=HC	GT:AD:AF:DP	0/1:74,66:0.47:140
chr7	51153056	.	CAAAGA	C	2943	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=4;HapScore=1;MGOF=5;MMLQ=27;MQ=56.22;NF=2;NR=16;PP=2943;QD=20;SC=CTATGAAGTACAAAGAAGGCA;SbPval=0.42;Source=Platypus;TC=38;TCF=3;TCR=35;TR=18;WE=51153069;WS=51153014;set=Platypus	GT:AD:AF:DP	1/0:20,18:0.47:38
chr7	51287470	rs801142	A	G	5376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.720;QD=7.23;ReadPosRankSum=-1.533;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:444,300:0.40:744
chr7	53103371	rs72598684	G	T	3935.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:173,184:0.52:357
chr7	53103382	rs72598685	G	T	4668.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:229,225:0.50:454
chr7	53103554	rs11238247	C	G	7575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-1.251;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:470,390:0.45:860
chr7	53103571	rs11238248	G	A	6916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.635;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:407,353:0.46:760
chr7	53103673	rs1184320	C	A	5187.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:201,254:0.56:455
chr7	53103946	rs12113170	G	C	7055.77	.	AC=1;AF=0.500;AN=2;DB;DP=993;set=Intersection	GT:AD:AF:DP	0/1:591,387:0.40:978
chr7	53104078	rs72598686	G	A	11406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=925;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-2.932;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:371,533:0.59:904
chr7	54614698	rs11432820	C	CG	14226.73	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:2,438:1.00:440
chr7	54618010	rs2293343	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	54621526	rs662136	T	C	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr7	54820130	.	AATT	A	2467.73	.	AC=2;AF=1.00;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	54820186	rs6952793	A	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	55002836	rs35747839	G	GA	2150.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.25;QD=43.89;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	55002841	rs2330916	T	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.25;QD=44.08;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	55002841	.	TC	AC	826	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=1.0000,1.0000;HP=4;HapScore=1;MGOF=0;MMLQ=28;MQ=58.77;NF=15,6;NR=12,12;PP=497,826;QD=19.6952300943;SC=TAGTTGAAAATCCAAAGAAAA;SbPval=0.62;Source=Platypus;TC=28;TCF=15;TCR=13;TR=27,18;WE=55002849;WS=55002831;set=Platypus	GT:AD:AF:DP	0/1:1,27:0.96:28
chr7	55002841	.	TC	TGC	826	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=1.0000,1.0000;HP=4;HapScore=1;MGOF=0;MMLQ=28;MQ=58.77;NF=15,6;NR=12,12;PP=497,826;QD=19.6952300943;SC=TAGTTGAAAATCCAAAGAAAA;SbPval=0.62;Source=Platypus;TC=28;TCF=15;TCR=13;TR=27,18;WE=55002849;WS=55002831;set=Platypus	GT:AD:AF:DP	0/1:0,18:1.00:18
chr7	55004546	rs2005868	C	T	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	55086780	rs712830	A	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	55221655	rs4947986	G	A	5166.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.725;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	55228053	rs1558544	A	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	55229202	rs17336800	C	T	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	55249063	rs1050171	G	A	11994.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr7	55266417	rs1140475	T	C	10187.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr7	55272826	rs2692456	G	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	55459563	rs2049497	A	G	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	55468773	rs815929	C	A	297.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	55495987	rs2272227	T	C	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	55498755	rs2293322	G	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	55499058	rs815988	A	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	55540707	rs815957	G	A	6697.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	55540791	rs712819	G	C	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	55560207	rs815951	C	T	5915.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	55565247	rs139072999	TGGG	T	1178.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=42.10;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	55750390	rs11238374	A	G	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.36;QD=25.64;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	55991144	rs2135116	A	G	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	55991292	rs2174460	GT	AC	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.44;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	56007576	rs34016595	C	T	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	56022981	rs15892	T	C	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	56136260	rs4245575	C	A	6489.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr7	56151489	rs2242508	A	G	9170.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr7	56152063	.	A	AT	154.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.89;ReadPosRankSum=0.282;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr7	56174115	rs10043	A	C	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	56174140	rs816407	G	T	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr7	57069669	.	T	C	47	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=2;HapScore=2;MGOF=9;MMLQ=23;MQ=47.08;NF=3;NR=0;PP=47;QD=27.2570708491;SC=GGACAGACCATGGTCTTGGAA;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=3;WE=57069677;WS=57069659;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	57069935	rs1966122	G	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	57071650	.	G	GAGCAGCAGCAGC	640.73	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.80;QD=128.15;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	57071671	rs187876791	T	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	57071725	rs62463099	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.36;QD=25.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	57188016	rs78588121	A	G	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr7	57188718	rs62464802	T	C	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.45;QD=25.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	57233554	rs34820155	G	C	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	57245247	rs11763159	A	G	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	63033167	.	T	TGAGGAG	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=8.911;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-2.550;QD=7.25;ReadPosRankSum=2.407;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:88,28:0.24:116
chr7	63033229	.	T	TACGGCCCCCGGCGCC	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=8.056;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-8.000;QD=1.81;ReadPosRankSum=-3.358;SOR=1.849;set=HC	GT:AD:AF:DP	0/1:147,14:0.09:161
chr7	63033298	.	C	CGCT	2113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DP=429;ExcessHet=3.0103;FS=2.902;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-2.185;QD=5.61;ReadPosRankSum=-0.442;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:248,129:0.34:377
chr7	63529450	rs35929359	CT	C	1086.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.98;ReadPosRankSum=2.941;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:4,64:0.94:68
chr7	63529956	rs4349869	G	A	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	63537638	rs34875861	CT	C	857.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.025;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.357;QD=15.05;ReadPosRankSum=1.298;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:4,53:0.93:57
chr7	63537849	rs4717170	G	A	8124.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr7	63673608	rs10252019	C	T	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr7	63673691	rs13233809	A	G	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	63674540	rs4718036	G	C	9465.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr7	63674573	.	G	T	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.269;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:159,42:0.21:201
chr7	63679733	rs10270226	A	G	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	63721251	rs12154540	A	G	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	63796835	rs7787036	T	C	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	63808867	rs11976837	C	A	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	63981563	rs10243954	A	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=25.15;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	64166642	rs35661712	T	TG	284.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	64169019	rs4717205	G	A	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	64169061	rs4717206	G	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	64275284	rs7809431	C	T	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:10,167:0.94:177
chr7	64275470	.	A	AT	979.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.206;QD=13.80;ReadPosRankSum=1.170;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:10,61:0.86:71
chr7	64275548	rs10236928	A	G	160.94	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr7	64276089	rs9654821	A	G	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.24;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	64291225	rs6460193	G	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	64291267	rs6460194	A	T	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	64291333	rs4483043	T	A	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	64291976	rs10949946	G	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	64291991	rs4236203	T	A	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	64378806	rs7796966	C	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	64389089	rs2017252	A	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	64437406	rs4607487	A	G	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=26.29;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	64438403	rs4718175	G	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	64438667	rs1404453	G	A	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr7	64439938	rs1852016	C	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	64451699	rs4717229	T	C	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	64451963	rs4618579	T	C	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	64452830	rs34639489	C	T	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	64453136	rs6460219	G	A	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	64639915	.	ACC	A,AC	1761.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=51.93;MQRankSum=-0.588;QD=30.91;ReadPosRankSum=-1.000;SOR=1.643;set=HC	GT:AD:AF:DP	1/2:2,23,32:0.40,0.56:57
chr7	64639926	rs80126668	C	G	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=25.845;MLEAC=1;MLEAF=0.500;MQ=50.15;MQRankSum=-0.352;QD=8.67;ReadPosRankSum=-1.098;SOR=0.006;set=HC	GT:AD:AF:DP	0/1:32,27:0.46:59
chr7	64852790	.	TTG	T	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=2.582;QD=1.99;ReadPosRankSum=-1.054;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:211,43:0.17:254
chr7	65084152	rs6978207	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;MQ=48.95;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	65150713	.	G	GA	43.25	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.11;QD=14.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	65150824	rs202004878	C	CCG	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=46.59;MQRankSum=0.000;QD=20.88;ReadPosRankSum=0.908;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr7	65419353	.	T	TTTA	1373.73	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr7	65425894	rs9530	A	G	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	65426054	.	CA	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.771;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:46,25:0.35:71
chr7	65439879	rs781143	G	C	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	65440835	.	C	CA	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.662;QD=2.58;ReadPosRankSum=1.009;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr7	65444359	rs139791587	T	TGA	580.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	65551931	rs313830	T	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	65552230	.	CGTGT	C,CGT	2201.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=2.612;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.421;QD=20.58;ReadPosRankSum=1.903;SOR=1.182;set=HC	GT:AD:AF:DP	1/2:13,37,57:0.35,0.53:107
chr7	65552497	rs313829	A	G	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	65552614	rs313828	T	C	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr7	65554352	rs160647	C	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	65579987	rs160639	C	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	65599196	rs2243480	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	65599246	rs5884583	CT	C	363.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr7	65817333	rs709595	G	C	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	65841981	rs6974355	A	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.51;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	65842128	rs11769079	G	A	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	65842221	rs11765965	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	65842543	rs112115083	C	CAT	10687.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	65842545	rs3815685	T	C	10696.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	66136372	rs148855688	G	GACC	1757.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	66136549	rs2707832	G	A	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	66147697	rs5884599	A	AG	4262.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=33.30;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	66409881	rs35111158	A	G	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	66463195	rs145124227	A	AT	991.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:14,54:0.79:68
chr7	66520726	.	CAAA	C	855.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.31;QD=45.04;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	66520741	.	A	ATT	963.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.39;QD=43.81;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	66532235	rs2711910	A	G	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	66582460	rs35171532	T	A	1715.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.993;MLEAC=2;MLEAF=1.000;MQ=59.57;MQRankSum=-0.357;QD=19.95;ReadPosRankSum=-0.899;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:6,80:0.93:86
chr7	66648030	rs2948336	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.90;QD=26.05;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	66648157	rs4145350	C	T	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.02;QD=25.64;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr7	66648199	rs55756354	G	A	6120.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.68;QD=25.29;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	66660045	rs55921608	C	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	66660078	rs56035776	T	C	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	66660242	rs2949097	A	G	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.01;QD=41.18;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	66660247	rs55673383	T	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.98;QD=44.34;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	66660360	rs34574768	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	66660377	rs35290283	C	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	66703238	rs201456718	A	AT	462.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.00;QD=21.03;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	66703328	rs139935023	G	A	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.11;QD=26.97;SOR=1.505;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	66785029	rs2537522	G	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr7	69065039	rs113411804	G	GCTGT	2113.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:9,89:0.91:98
chr7	70229595	rs1983487	T	G	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	70238858	rs55838430	G	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	70249728	.	TAAAAAAAAA	T	592.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.87;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	70252185	rs2293500	A	G	9133.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr7	70254674	rs941346	G	T	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.376;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	70772565	rs55690472	A	G	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	70800407	rs13240200	T	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	70885883	rs11455717	C	CT	4925.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	70886107	rs11455716	G	GC	2763.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	71036473	rs10277319	C	T	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	71571436	rs10950296	G	C	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	71868337	.	T	A	763.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:57,42:0.42:99
chr7	72081604	rs112131884	G	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:76,30:0.28:106
chr7	72081634	rs200419457	T	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:166,88:0.35:254
chr7	72081774	rs3015854	A	G	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=15.515;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-17.437;QD=2.20;ReadPosRankSum=-1.416;SOR=1.343;set=HC	GT:AD:AF:DP	0/1:265,66:0.20:331
chr7	72297490	rs142535243	C	T	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=25.59;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	72304470	rs5884895	GT	G	3785.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	72395602	.	G	C	211.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.86;QD=21.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	72413423	rs71554686	C	T	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=11.059;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-1.118;QD=9.86;ReadPosRankSum=-1.341;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr7	72413443	rs62463429	G	A	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.836;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=8.214;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-4.751;QD=8.43;ReadPosRankSum=0.333;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:74,62:0.46:136
chr7	72413581	rs71554687	G	A	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=4.975;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-19.913;QD=0.84;ReadPosRankSum=-1.791;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:444,79:0.15:523
chr7	72413593	rs71554688	T	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=3.969;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-19.484;QD=0.53;ReadPosRankSum=-2.282;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:404,63:0.13:467
chr7	72416333	rs237934	C	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	72418940	rs145850957	G	T	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	72441185	.	C	G	709.77	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	72613683	.	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.95;MQRankSum=-4.375;QD=0.81;ReadPosRankSum=0.525;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr7	72711867	rs62465076	A	G	79.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.77;QD=15.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	72711986	rs62465077	G	T	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.67;QD=33.67;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	72711991	rs62465078	C	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.12;QD=43.10;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	72712121	rs62465079	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.39;QD=25.15;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	72714488	rs140759302	T	C	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.19;QD=25.35;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	72717933	rs11544043	C	T	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	72738350	rs55963844	C	CG	4065.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	72738749	rs28626137	A	G	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.60;QD=39.44;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	72738762	rs6980258	CA	TG	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=58.03;QD=46.28;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	72750627	rs4717751	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	72754645	rs56301507	G	A	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	72850178	rs1178947	T	C	7278.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.205;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.18;ReadPosRankSum=-1.446;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:1,277:1.00:278
chr7	72857049	rs1178977	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	72861768	rs62465136	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	72874137	rs55696900	C	T	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	72879898	.	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-1.511;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr7	72884574	rs142502996	GAA	G	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	72966422	.	C	CA	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=6.898;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=1.807;QD=3.12;ReadPosRankSum=0.763;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:59,30:0.34:89
chr7	72966638	rs73137012	T	C	7597.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr7	72968002	.	C	CA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=3.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.706;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr7	72971704	rs112203790	G	A	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=25.70;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	72971968	rs112778383	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	72984780	rs14415	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	72987354	rs2286276	C	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	72989141	rs34550818	C	CA	742.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	72989342	rs62466290	G	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	73010442	rs13247874	C	T	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	73010754	rs61738649	C	T	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	73019975	rs61010704	A	G	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	73020301	rs799157	T	C	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	73022211	rs77048596	G	A	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	73084175	rs36067105	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	73097082	rs79849491	A	G	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr7	73097713	rs61751896	G	A	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	73097919	rs113902085	C	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	73101137	rs11769825	A	G	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	73114645	rs72555387	G	A	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	73118196	rs4363087	T	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr7	73118398	rs7807316	T	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.263;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	73122977	rs2229854	G	A	9530.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr7	73123529	rs73362402	C	T	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	73134026	.	C	T	319.77	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	73134096	.	G	GCCCCGCCCAGA	834.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=43.93;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	73151220	rs2293484	G	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	73151644	rs6460052	A	G	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	73152578	rs367606949	AC	A	2832.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	73184435	rs7084	G	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	73279361	rs61742124	C	T	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	73467650	rs66498390	CTGTGTG	CTG,C	385.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=27;set=Intersection	GT:AF:DP	1/1:1.00:13
chr7	73469169	rs2239691	C	T	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	73470714	rs2071307	G	A	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	73470782	rs2856728	C	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	73513242	rs34911416	CA	C	291.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.018;QD=7.29;ReadPosRankSum=1.376;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr7	73530046	rs149618	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	73604127	.	TAC	T	1968.73	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,52:0.50:105
chr7	73654225	rs73129384	C	T	6257.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	73663451	rs41548312	G	A	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	73752699	rs574637	C	T	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	73753250	rs539518	T	C	12873.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.05;ReadPosRankSum=0.755;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:2,512:1.00:514
chr7	73768065	rs504854	T	C	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	73800819	rs148512249	T	C	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	73803644	rs35415684	T	A	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	73814749	rs2522943	G	C	11199.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,440:1.00:440
chr7	73922613	rs2074660	T	C	11189.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,424:1.00:424
chr7	73922677	rs10269478	C	G	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.360;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	73932560	rs17851629	A	G	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	73932683	rs61438591	T	C	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr7	73944185	rs2240357	T	C	11741.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr7	73950636	rs2074667	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	73959331	rs2074665	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	73969418	rs56140607	T	C	5979.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	73969541	rs2301895	A	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	74004032	.	G	GA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=3.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-2.263;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr7	74167356	rs116428284	A	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.73;QD=21.44;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	74167490	rs373607978	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=43.87;MQRankSum=1.530;QD=2.85;ReadPosRankSum=1.151;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr7	74193668	rs17295741	G	A	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	74195192	.	G	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=-0.844;QD=4.92;ReadPosRankSum=0.000;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr7	74197598	.	T	A	250.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.73;QD=22.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	74251271	.	C	T	687.77	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	74489228	rs75800152	G	A	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	74489486	rs6955671	T	C	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	74582392	rs199966566	A	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.64;QD=24.22;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	74582543	.	T	G	516.77	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.69;QD=24.61;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	74608740	.	C	CTT	576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.98;MQRankSum=-7.388;QD=7.12;ReadPosRankSum=2.063;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:51,30:0.37:81
chr7	75039300	rs112848269	C	T	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	75044385	rs236649	C	T	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	75044830	rs236651	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.28;QD=26.11;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	75045496	rs201842651	AG	A	4014.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.77;MQRankSum=-2.169;QD=28.88;ReadPosRankSum=-0.544;SOR=0.370;set=HC	GT:AD:AF:DP	1/1:1,138:0.99:139
chr7	75048750	rs6465926	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	75048804	rs365844	T	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	75051375	rs398016	T	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	75055097	rs374900785	C	A	144.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.51;QD=24.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	75071691	.	T	G	135.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=27.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	75145266	rs5884966	TA	T	1124.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:3,51:0.94:54
chr7	75168562	rs1167835	G	A	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	75168764	rs3757603	G	T	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.041;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	75168788	rs3757602	G	T	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	75171438	rs11773745	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	75176196	rs1167800	G	A	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	75183403	rs1167807	A	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	75185990	.	C	CA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.329;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.650;QD=2.11;ReadPosRankSum=1.716;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr7	75210763	rs237239	TG	CA	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	75216202	rs1167787	A	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	75228483	rs41281695	G	A	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	75401418	rs2240478	G	A	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr7	75441108	rs11465315	C	T	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	75441111	rs11465314	G	T	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	75513062	rs42183	A	G	12343.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=-0.888;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:2,495:1.00:497
chr7	75597399	.	C	T	349.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	75597417	.	G	T	354.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	75597545	rs10954724	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	75609677	rs1135612	A	G	10181.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr7	75610763	rs2286819	G	A	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	75612770	rs13223707	C	G	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	75612783	rs13240147	G	A	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	75613998	rs4732514	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	75614029	rs4732515	T	C	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	75614082	rs4732516	C	G	9905.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr7	75614288	rs2286822	C	T	44537.77	.	AC=2;AF=1.00;AN=2;DB;DP=997;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,982:1.00:982
chr7	75614296	rs2286823	G	A	46559.77	.	AC=2;AF=1.00;AN=2;DB;DP=1105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,1089:1.00:1089
chr7	75614863	rs2302431	TG	CT	6552.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	75614953	rs2228104	T	C	8333.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr7	75616778	rs11767816	A	T	7843.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=44.57;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	75616778	.	AC	TA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=3;HapScore=1;MGOF=28;MMLQ=19;MQ=60.3;NF=44;NR=54;PP=2947;QD=20;SC=TACTCAGAAGACCCAGTCCCT;SbPval=0.5;Source=Platypus;TC=102;TCF=45;TCR=57;TR=98;WE=75616787;WS=75616768;set=Platypus	GT:AD:AF:DP	1/1:4,98:0.96:102
chr7	75616779	rs11766464	C	A	7843.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=44.82;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	75616817	rs201142190	GGACA	G	7551.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	75621661	rs2286826	G	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	75621827	rs4732519	A	G	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	75621979	rs6467956	T	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	75628461	rs4728538	A	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr7	75629778	rs3801472	T	C	5722.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	75630274	rs8565	T	C	7019.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr7	75633209	rs2058389	T	C	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	75643313	rs7798794	C	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	75658197	rs13240967	C	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	75659815	rs1044483	T	C	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	75677430	rs10231092	C	G	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	75694345	rs3214335	TC	T	1701.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	75912536	rs3839766	TG	T	344.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	75914934	rs75544239	G	GC	3222.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	75959188	rs2072435	G	A	10775.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr7	76022688	.	CCGCTGTCAGCCTCACCTT	C	2270.73	.	AC=2;AF=1.00;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	76023088	rs140509712	C	CG	7498.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	76023131	rs35508921	A	AG	8150.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.16;ReadPosRankSum=-1.974;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:2,322:0.99:324
chr7	76062441	.	T	TTTGGTTTTGG	729.73	.	AC=2;AF=1.00;AN=2;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.30;QD=34.75;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	76112183	.	C	T	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770;ClippingRankSum=0.000;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-19.312;QD=2.11;ReadPosRankSum=-3.990;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:340,91:0.21:431
chr7	76112249	rs147779783	A	C	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.714;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-23.480;QD=1.25;ReadPosRankSum=5.945;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:525,111:0.17:636
chr7	76131586	rs2690683	G	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.26;QD=25.38;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	76131645	rs6979487	A	G	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.25;QD=45.79;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	76131650	rs6958774	G	A	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.98;QD=41.29;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	76131695	rs4728775	A	G	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	76131812	rs6963784	C	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	76132898	rs17855260	T	C	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	76132962	rs2690526	A	G	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.52;QD=27.31;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	76135134	rs7398	G	A	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	76140186	rs12666503	T	C	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	76140449	rs145740550	C	T	70.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=45.49;MQRankSum=1.282;QD=14.16;ReadPosRankSum=-0.253;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr7	76142536	rs2286988	G	A	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr7	76144229	rs2004545	A	G	108.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-1.014;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr7	76144455	rs1799125	A	C	17966.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.59;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,702:1.00:702
chr7	76144483	rs1636632	A	G	12654.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.04;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr7	76144560	rs1799126	T	C	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	76607938	rs56083327	C	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	76608143	rs2245368	C	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.23;QD=25.74;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	76610299	rs62473743	A	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.98;QD=28.92;SOR=1.758;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	76610346	rs71552449	C	T	1819.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.216;MLEAC=2;MLEAF=1.000;MQ=44.26;MQRankSum=-1.808;QD=28.00;ReadPosRankSum=-1.148;SOR=0.422;set=HC	GT:AD:AF:DP	1/1:1,64:0.98:65
chr7	76610407	rs62473744	A	G	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	76610621	rs6956966	T	C	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	76619795	rs149365700	G	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.02;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	76632543	rs3748124	G	A	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	76632601	rs2430258	C	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.40;QD=30.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	76632736	rs3748126	C	G	3848.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:6,159:0.96:165
chr7	76633640	rs79277119	C	A	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.59;MQRankSum=-1.558;QD=10.36;ReadPosRankSum=-0.106;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,40:0.56:72
chr7	76634198	rs370899452	C	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.01;QD=27.52;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	76634269	rs77501390	G	A	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	76635003	rs76696965	A	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.36;QD=42.30;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	76635006	rs200111237	C	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.21;QD=44.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	76635139	rs62474189	CG	TA	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=4.771;JOINED;MLEAC=1;MLEAF=0.500;MQ=40.11;MQRankSum=1.221;QD=33.86;ReadPosRankSum=-0.140;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr7	76739455	rs10275215	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.48;QD=42.21;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	76739462	rs6962677	G	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.22;QD=45.36;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	76742649	rs142960161	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.68;QD=24.68;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	76751305	rs3114350	C	T	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	76751357	rs3095481	G	A	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	76871086	rs74783981	G	A	7210.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr7	76883685	rs3114318	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=23.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	76883717	rs2056709	C	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=23.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	76883989	rs3114319	C	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	76885769	rs3108428	A	G	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	76958730	rs10274222	A	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	76984752	rs35161141	CA	C	987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.213;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.657;QD=9.32;ReadPosRankSum=1.047;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:26,80:0.75:106
chr7	77006554	rs11463297	T	TA	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=8.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.471;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr7	77035392	rs6949654	T	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	77200392	rs17155183	A	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	77227241	rs6955503	C	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	77247667	.	C	CT	36.77	.	AC=1;AF=0.500;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	77247821	rs9640663	G	A	5788.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	77255941	rs17467232	T	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	77265140	rs2230602	G	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	77326410	rs3750128	T	C	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	77365770	rs3764824	A	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.03;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	77397906	rs10538970	ATAT	A	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	77402746	rs10953349	A	G	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	77423152	rs1045463	C	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	77423574	rs7953	G	A	5831.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.555;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=3.243;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=-0.712;SOR=0.407;set=HC	GT:AD:AF:DP	1/1:1,229:1.00:230
chr7	77469486	rs17807802	C	T	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	77523521	rs10267180	A	G	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	77567008	.	AT	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-1.081;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr7	77755197	rs2023946	A	G	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	77756580	rs2074641	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	77756724	rs7812015	C	T	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	77756815	rs9656109	G	T	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	77756849	rs2074642	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	77764253	rs1465221	G	A	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	77764591	rs767682	C	A	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	77830410	rs17809600	C	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.74;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	78119199	rs1990577	A	C	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=24.71;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	78119221	rs3086374	G	GAA,GAAA	1875.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;QD=30.75;SOR=1.919;set=HC	GT:AD:AF:DP	1/2:0,46,15:0.75,0.25:61
chr7	78130801	rs10641091	C	CT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=0.145;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr7	78256342	rs38116	C	T	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	78256643	rs38117	G	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	80087981	rs2074673	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.57;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	80088041	rs2074674	G	A	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.33;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	80091981	rs799936	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	80141069	rs10230573	A	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=1.585;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	80290369	rs3211892	A	G	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.273;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	80299113	rs3173803	G	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	80374342	rs1949971	A	G	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	80374438	rs1949972	T	C	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	80378148	rs1405743	T	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	80378175	rs2886793	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	80378319	rs2272351	G	C	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	80456841	rs4461841	C	T	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	80817269	rs327695	T	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	81339304	rs2074725	A	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	81346685	rs1800793	T	C	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	81350208	rs12536657	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	81350223	rs10272030	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	81355066	rs2887069	G	A	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	81359116	rs5745686	CA	C	1555.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.712;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.69;ReadPosRankSum=-1.078;SOR=1.734;set=HC	GT:AD:AF:DP	1/1:2,77:0.97:79
chr7	81366210	.	G	GGTGTGTGTGTGT	560.73	.	AC=2;AF=1.00;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	81372156	rs5745676	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	81372452	rs2214826	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	81374500	rs4732406	G	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	81381326	rs5745646	C	T	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	81591114	rs72063149	GTAATGATTATAACAGTATATACAATTTCT	G	357.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	81591409	rs146923887	G	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	81593454	rs3735517	G	A	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	81596813	rs17240387	T	C	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	81603945	rs61006565	AT	A	44	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	81626356	rs6944326	G	A	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	81630961	rs76743801	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	81641570	rs4019047	G	GAAAA,GAAAAA	1402.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.896;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.976;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.63;ReadPosRankSum=1.234;SOR=1.034;set=HC	GT:AD:AF:DP	1/2:5,23,21:0.47,0.43:49
chr7	81642949	rs37136	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	81695842	.	TA	T	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.557;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr7	81964578	rs5885290	G	GA	966.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:3,50:0.94:53
chr7	82453708	rs2522833	A	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr7	82455895	rs2715150	A	G	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	82475786	rs67293081	TTA	T	86.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	82478415	rs2522840	T	G	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	82497343	rs4628206	T	A	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	82531887	rs150270529	TATA	T	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	82546282	rs12707531	C	A	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	82581488	rs10630259	T	TTCA	13776.73	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr7	82581859	rs976714	C	T	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	82582846	rs10954696	C	T	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	82583609	rs10487648	A	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	82763534	rs149498958	A	AATATAT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	82764425	rs2877	C	G	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	82785304	rs61738783	G	A	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	83021799	rs375518443	TAAAA	T,TA	1143.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.343;QD=32.68;ReadPosRankSum=-1.277;SOR=0.829;set=HC	GT:AD:AF:DP	1/2:1,12,22:0.34,0.63:35
chr7	83023587	.	TAC	T	9360.73	.	AC=2;AF=1.00;AN=2;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=33.19;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	83026100	rs150931802	C	CAA	558.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	83029280	rs2255906	T	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.34;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	83029639	rs2255820	A	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	83031907	rs2709930	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	83032187	rs2722976	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	83095955	rs7806439	A	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	83098714	.	C	CTTTT	386.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;QD=32.23;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	83119676	rs73707854	C	T	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	83277699	.	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=5.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.606;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr7	83590852	rs797821	T	C	7520.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr7	83606353	rs35361892	T	TGA	1020.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	83606518	rs701320	G	A	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	83739762	rs1990044	T	C	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	83740015	rs1990045	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	83740030	rs13243696	C	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	83764309	rs17241389	C	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	83823737	rs67227861	AG	A	1219.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.936;MLEAC=2;MLEAF=1.000;MQ=60.61;MQRankSum=0.559;QD=23.92;ReadPosRankSum=-1.227;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:4,47:0.92:51
chr7	84628989	rs7800072	T	G	8559.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr7	84644346	rs6468008	C	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	84644500	rs17559084	C	T	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	84644666	rs17639600	G	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	84647477	rs7780132	C	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.67;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	84684961	rs199946932	CATATATATATATATAT	C	418.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=-0.000;QD=27.92;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr7	84694794	rs148644955	T	C	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	86274196	rs274623	T	G	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	86479928	rs55732942	C	T	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	86536849	rs10547506	CA	C	72.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.07;ReadPosRankSum=-0.441;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr7	86547639	.	C	CA	50.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.549;QD=4.23;ReadPosRankSum=1.025;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	86567364	rs7797095	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	86571304	rs13236006	CA	AG	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	86594379	rs6976741	G	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	86594423	rs6976877	G	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	86814122	.	C	CT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=6.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.572;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:109,24:0.18:133
chr7	86978347	rs802037	C	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	86978554	rs11971666	T	C	155.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	86998842	rs6966140	G	A	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	86998936	rs35374737	AT	A	83.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	87005287	rs59190666	C	CT,CTT	688.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.769;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.12;ReadPosRankSum=-2.332;SOR=0.788;set=HC	GT:AD:AF:DP	1/2:3,24,11:0.63,0.29:38
chr7	87011349	rs31630	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	87022024	rs31644	G	C	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	87027419	rs5885580	C	CT	60.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.17;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	87032613	rs31653	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	87053150	rs31667	A	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	87053206	rs31668	G	A	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	87056260	rs10647775	A	AGT	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=-0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.14;ReadPosRankSum=-0.265;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr7	87069758	rs31675	T	C	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	87168749	rs4728699	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	87215114	rs1211152	A	C	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	87229501	rs2214102	T	C	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	87563975	rs57360340	AT	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=3.701;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr7	87704799	rs3085476	G	GAGAA	429.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.64;QD=39.07;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	87745903	rs2301998	A	T	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	87913361	rs1981529	C	T	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	88847451	rs4140973	A	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	89792250	rs39286	A	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	89797144	rs259136	G	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	89854446	rs194520	T	G	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr7	89856608	rs110360	C	T	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	89861832	rs194524	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	89861890	rs194525	G	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	89861942	rs194526	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	89867446	rs35403811	T	TCTG	5776.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:4,134:0.97:138
chr7	89887587	rs11771963	G	T	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	89901039	rs10280053	A	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	89909096	rs183657924	C	T	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	89912301	rs1029365	G	A	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	89927191	rs6465256	T	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	89937027	rs35441907	CA	C	472.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	89938588	rs7803620	C	G	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	89938680	rs1134956	C	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	89969831	rs42637	A	G	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	89969878	rs2285399	A	G	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	89971556	rs1557650	A	C	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	89983808	rs42663	T	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	89984409	rs42664	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	90003694	rs11563547	A	C	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	90014111	rs9886362	G	T	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	90225928	rs7782773	T	C	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	90233618	rs6465273	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	90528473	.	ACACTGAAAAAT	A	187.87	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	90584944	rs73227071	G	A	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	90747315	rs803167	A	T	293.84	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr7	90894102	rs2232158	C	G	31.29	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	90894459	rs139480179	A	ACCG	775.87	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr7	91502825	.	TTA	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.15;ReadPosRankSum=0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr7	91599825	rs2188155	A	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	91630620	rs6964587	G	T	6155.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr7	91632306	rs1989779	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	91641928	rs13245393	A	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	91652178	rs10644111	A	AAAC	2059.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	91659150	rs17164315	C	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	91667692	rs2285333	T	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	91670318	.	A	ATT	72	.	AC=2;AF=1.00;AN=2;BRF=0.4;FR=1.0000;HP=15;HapScore=2;MGOF=19;MMLQ=23;MQ=60.0;NF=0;NR=4;PP=72;QD=18.75;SC=TGTAGCCATAATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=4;WE=91670326;WS=91670308;set=Platypus	GT:AD:AF:DP	1/1:5,4:0.44:9
chr7	91671853	rs926192	C	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	91674302	rs9785013	G	A	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	91687351	rs1544377	A	G	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	91690457	rs56072181	A	G	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	91691601	rs10236397	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	91706381	rs200199046	T	TTTA	37.37	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chr7	91706408	rs71537263	TTC	T	46.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.25;ReadPosRankSum=1.036;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr7	91707150	.	G	A	911.77	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	91707197	rs733957	C	T	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	91711791	rs2079082	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	91712698	rs6960867	A	G	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	91713016	rs34688691	TA	T	200.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	91713972	rs10228334	C	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	91714911	rs1063242	C	T	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	91715662	rs28927678	C	T	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	91724600	rs144383267	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	91726927	rs1063243	A	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	91727385	rs6946356	G	A	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	91736794	rs7785971	T	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	91743150	rs7797834	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=24.31;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	91752690	rs2269727	C	A	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr7	91758422	rs4729021	C	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	91761305	rs66673218	CA	C	326.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	91779242	rs1978061	G	A	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	91779971	rs6465353	T	G	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	91863700	rs2027950	G	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	91936975	.	A	AT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.916;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr7	92027187	rs38793	A	G	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	92028039	rs38794	C	A	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	92077206	.	A	G	3188.77	.	AC=2;AF=1.00;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	92077387	rs6963580	C	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	92129161	.	C	CA	2032.73	.	AC=1;AF=0.500;AN=2;DP=214;set=Intersection	GT:AD:AF:DP	0/1:41,118:0.74:159
chr7	92131289	rs10278857	G	T	5180.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	92135802	rs6465359	T	A	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	92136499	rs151002946	T	TA	416.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	92136559	rs79143453	CT	C	123.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	92140397	rs2111200	C	T	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	92140455	rs5885807	CT	C	71.82	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	92147580	rs113104510	C	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	92163629	rs17759900	T	C	722.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.003;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.09;ReadPosRankSum=0.669;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr7	92166131	rs6950842	T	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.60;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	92191746	rs6970992	C	A	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	92205151	rs17760432	T	C	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	92247539	rs3731373	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	92300568	rs3731332	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	92855628	rs200511300	T	TA	834.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.416;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=14.39;ReadPosRankSum=2.170;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:9,49:0.84:58
chr7	92987445	rs2285505	T	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	93063701	rs200558502	G	GA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=-0.000;QD=4.57;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	93067334	rs10713823	TA	T	1280.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	93070811	rs2106735	C	T	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	93070870	rs5885829	GA	G	2001.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr7	93073147	rs2074123	C	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	93346095	rs2027984	C	A	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	93515993	rs4517	T	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	93623458	rs2286845	A	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	94027043	rs144776919	C	CT	491.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.91;ReadPosRankSum=1.557;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr7	94030899	rs1800222	T	C	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	94035433	rs17073	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	94037778	rs2293739	T	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	94038934	rs42518	C	T	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	94038966	rs28754326	G	A	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	94039032	rs42519	C	T	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	94039900	rs42520	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	94040133	rs389328	T	A	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	94041937	rs412777	A	C	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	94043239	rs42524	C	G	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	94043274	rs421587	A	G	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	94045576	rs42526	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	94047903	rs3216182	AT	A	448.19	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:4,28:0.88:32
chr7	94058395	rs6465412	T	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	94058410	rs11374490	C	CT	469.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.331;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.37;ReadPosRankSum=-0.480;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr7	94058420	rs34888194	C	CT	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.478;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr7	94157585	rs57770781	CT	C	152.27	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr7	94174854	rs3793326	T	C	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	94175073	rs3793325	T	C	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	94178749	rs10272136	T	C	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	94178761	rs7801436	C	T	274.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	94180691	rs10280457	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	94182373	rs6465417	A	G	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	94183993	rs10280843	G	A	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	94184691	rs10238176	T	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	94227276	rs10247562	T	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.33;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	94227509	rs10232398	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	94229271	rs28439281	G	A	155.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	94229280	rs28614163	G	A	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	94247971	rs6465421	C	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	94257449	.	T	TACAC,TACACAC	1355.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=32;set=Intersection	GT:AF:DP	1/2:0.26,0.74:31
chr7	94740524	rs11379075	G	GT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.015;SOR=1.702;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr7	94897801	rs854522	T	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	94898811	rs854524	G	A	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	94903420	rs2240026	G	A	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	94931433	rs72084985	AC	A	153.73	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.62;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	94931434	.	C	A	258	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=20;HapScore=2;MGOF=15;MMLQ=26;MQ=57.57;NF=6;NR=5;PP=258;QD=26.615564777;SC=AAAAAAAAAACCAAGAATTGA;SbPval=0.63;Source=Platypus;TC=11;TCF=6;TCR=5;TR=11;WE=94931442;WS=94931424;set=Platypus	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	94937446	rs662	T	C	9514.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr7	94941038	rs1157745	G	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	94946255	rs3917498	G	T	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	94947799	rs2074351	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	94953895	rs705379	G	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	94953913	rs705380	G	C	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	94989255	.	CT	C	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.107;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:25,23:0.48:48
chr7	94992244	rs10953143	T	C	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	95001555	rs1053275	C	T	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	95019355	rs6977389	G	A	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	95024046	rs11970910	A	G	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	95025600	rs13226149	G	A	13352.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,525:1.00:525
chr7	95034775	rs7493	G	C	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	95035582	rs3735586	A	T	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	95039445	rs2286232	C	T	1114.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.639;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.084;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.91;ReadPosRankSum=-0.951;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,54:0.96:56
chr7	95041016	rs12026	G	C	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	95041542	rs2068604	G	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr7	95125050	.	C	CT,CTT	793.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=6.072;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.584;QD=12.21;ReadPosRankSum=1.302;SOR=1.337;set=HC	GT:AD:AF:DP	1/2:15,33,17:0.51,0.26:65
chr7	95442405	rs11452827	C	CT	239.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.29;MQRankSum=0.855;QD=11.99;ReadPosRankSum=-0.371;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:3,17:0.85:20
chr7	95442690	rs35397709	T	TA,TAAA	682.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.224;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=10.339;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-0.859;SOR=1.387;set=HC	GT:AD:AF:DP	1/2:7,11,34:0.21,0.65:52
chr7	95447785	rs367808133	AT	A	653.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=2.408;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr7	95447787	.	T	A	164.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.950;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr7	95668664	rs1048666	C	A	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	95709602	rs42083	C	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	95709666	rs42082	C	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	95727014	rs7794344	T	C	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	95818475	rs6957286	G	T	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	95864108	rs6957975	T	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	96115477	.	C	CT	276.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;QD=14.56;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:3,16:0.84:19
chr7	96338929	rs10250534	A	G	9560.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:3,382:0.99:385
chr7	96635155	.	CTTTTTT	C	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=0.153;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr7	97362950	.	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	97484478	rs4568556	A	T	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	97488146	rs36021744	G	GT	1501.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	97488569	rs1049674	A	T	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=25.74;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	97498535	rs6465630	A	G	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	97616670	rs112827162	A	G	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.333;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.769;MLEAC=1;MLEAF=0.500;MQ=54.01;MQRankSum=-6.205;QD=16.07;ReadPosRankSum=1.028;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr7	97619528	rs33957709	AT	A	408.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.548;QD=14.60;ReadPosRankSum=-0.672;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr7	97766869	rs41278836	A	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	97788764	rs10499944	C	T	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	97788809	rs17169406	T	C	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	97820247	rs66773750	AAC	A	754.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.58;QD=34.31;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	97820868	rs11451148	C	CA	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-1.654;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:113,31:0.22:144
chr7	97842216	rs116918728	G	A	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	97846856	rs11471393	CGAG	C	3620.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	97851109	rs4729416	T	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	97852899	rs2270595	A	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	97862097	rs139511001	GA	G	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.456;QD=2.15;ReadPosRankSum=0.017;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:68,34:0.33:102
chr7	97874143	rs3816944	C	A	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	97911618	rs111849767	G	A	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	97920270	rs7778015	T	C	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	97921834	rs6465664	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	97922773	rs12873	T	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	97922851	rs12728	C	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	97922875	rs13008	G	A	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	97933601	rs1045916	C	T	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	97935671	rs13232181	C	G	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	97937258	rs6465666	T	C	8137.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr7	97939998	rs139666268	C	CTATTTATT	225.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.63;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	97944744	rs2107716	G	A	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	97944931	.	A	AAAT,AAATAAT	435	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.4959,0.5041;HP=12;HapScore=4;MGOF=2;MMLQ=27;MQ=61.41;NF=0,0;NR=12,12;PP=12,435;QD=1.41666666667;SC=CATACTAAAAAAAAAAAAATA;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=12,12;WE=97944945;WS=97944921;set=Platypus	GT:AF:DP	0/1:0.92:13
chr7	97944933	rs11385557	A	AT	1427.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.96;QD=41.99;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	97944935	rs11385558	A	AT	1427.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=43.26;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	97944937	rs372695844	A	ATAAT	1396.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.48;QD=48.16;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	97991792	rs3801257	A	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	98460824	rs10238224	C	A	9085.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:1,355:1.00:356
chr7	98461062	rs1548622	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	98495299	rs35409546	G	GTT	602.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.45;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	98495304	rs56294747	G	T	946.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.45;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	98500956	rs7777927	C	T	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	98503707	rs3214239	TG	T	1253.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.82;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	98504025	rs139837317	TTTTATTTATTTA	T	877.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=43.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	98513300	rs1859662	C	T	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	98522627	.	C	CA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.890;QD=0.62;ReadPosRankSum=-1.119;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr7	98529320	rs183797056	T	G	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	98548682	rs140313456	C	CTGTGTG	403.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr7	98550654	rs66469618	TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	T	3047.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=2.973;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	98553739	rs3214240	T	TC	366.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	98558880	rs160384	G	C	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	98608606	rs62472037	T	A	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	98648517	rs57957340	TG	T	1325.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	98650051	rs219797	G	C	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	98655214	rs200219353	G	GT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-1.282;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr7	98655223	rs61690993	G	T	719.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.74;ReadPosRankSum=-0.281;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:6,37:0.86:43
chr7	98658130	rs11311529	CT	C	847.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:13,61:0.82:74
chr7	98659812	rs67817120	GGT	G	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	98659813	.	GTGA	G	617	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=59.31;NF=4;NR=8;PP=617;QD=55.7108062168;SC=GAACTCCTGGGTGATTCAAGC;SbPval=0.52;Source=Platypus;TC=13;TCF=4;TCR=9;TR=12;WE=98659825;WS=98659803;set=Platypus	GT:AD:AF:DP	1/1:1,12:0.92:13
chr7	98659816	rs11295323	AT	A	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	98659817	.	T	A	337	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=1;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=10;NR=8;PP=337;QD=20.6539562526;SC=TCCTGGGTGATTCAAGCAATC;SbPval=0.4;Source=Platypus;TC=21;TCF=13;TCR=8;TR=18;WE=98659825;WS=98659803;set=Platypus	GT:AD:AF:DP	1/1:3,18:0.86:21
chr7	98779740	rs6465740	G	T	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr7	98782750	rs10953283	C	T	7242.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr7	98785818	.	A	AAAAG	95	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=23.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	99012951	rs371170976	CAG	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=2.380;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:64,8:0.11:72
chr7	99293475	rs2740565	T	A	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	99293859	rs11401860	C	CT	498.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-0.785;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:5,31:0.86:36
chr7	99297601	rs2037500	A	C	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr7	99297804	rs2177180	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	99302994	rs10211	C	T	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	99303094	rs12360	G	A	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	99306566	rs2687077	C	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	99306685	rs2257401	C	G	8206.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=25.89;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	99314986	rs2687075	A	G	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	99365943	rs2687116	C	A	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	99370493	rs2738258	T	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	99654600	rs11558475	A	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	99654689	rs11558476	G	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	99673359	rs56054049	A	C	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	99675129	rs142917587	TA	T	432.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=28.85;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	99687969	rs140986444	T	C	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	99688822	rs2272346	A	C	12033.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr7	99690690	rs4928	G	C	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	99690747	rs1130958	T	C	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	99690849	rs115964837	C	A	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	99693337	rs7799115	T	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	99693552	rs2307355	G	A	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	99694771	rs76157218	G	A	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	99694784	rs115073631	C	G	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	99696370	rs1534309	C	G	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	99699626	rs2293481	T	C	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	99700274	rs41280962	C	G	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	99701640	rs4729577	T	C	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	99703407	rs35827619	GA	G	338.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;MQ=60.42;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr7	99704827	rs1050542	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	99705320	rs4134927	A	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	99705346	rs4134926	TC	T	330.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	99705358	rs4134925	C	T	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	99706303	rs4134923	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	99707712	rs2272338	A	G	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	99707950	rs4134917	C	T	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	99710584	rs4134904	A	AG	3343.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	99711461	rs34119670	AC	A	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=2.116;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:271,44:0.14:315
chr7	99720309	rs76702812	C	G	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	99720640	rs1569055	C	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	99725146	rs78225095	C	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	99747130	rs12878	G	A	10398.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr7	99751017	rs3736591	A	G	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	99772298	rs10252037	A	C	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr7	99802812	rs2246713	G	C	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	99810643	rs1618851	T	G	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	99811204	rs1623264	G	C	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	99811313	rs1624099	G	A	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	99811464	rs1727130	C	G	6565.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	99816179	rs1727142	T	C	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.44;QD=25.39;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	99816256	rs1727143	C	A	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.15;QD=25.41;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	99816272	rs1636986	A	G	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.18;QD=39.40;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	99816275	rs1636987	G	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.89;QD=49.61;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	99816285	rs79649688	A	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.62;QD=55.84;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	99817570	rs144154892	C	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	99817859	rs2906645	A	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	99818137	rs2906646	G	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	99818927	rs705867	C	T	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	99819004	rs141918023	CTCTG	C	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	99821128	rs118107707	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	99821381	rs858508	C	G	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	99821470	rs858509	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	99821685	rs863450	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	99821838	rs372167927	ATTTTTT	A	305.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	99971313	rs2405442	T	C	16744.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.80;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,649:1.00:649
chr7	99971834	rs1859788	A	G	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	100004446	rs1476679	C	T	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	100013457	rs5015756	T	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	100064719	rs7806537	A	G	10457.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr7	100137085	rs78279132	G	C	6805.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr7	100173481	rs2075668	A	G	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	100175473	rs909152	T	C	10159.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr7	100197871	rs2272575	A	G	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	100227188	rs7457868	A	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	100240771	rs1052897	A	T	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	100280896	rs221793	A	C	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	100280988	.	T	C	7991.77	.	AC=2;AF=1.00;AN=2;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr7	100281768	rs221794	T	C	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr7	100283261	rs221795	C	T	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	100284510	rs35436931	TG	T	5295.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	100284913	rs221796	C	G	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	100285974	rs221797	A	C	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	100319680	.	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=2.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=1.194;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr7	100333173	rs368199475	GA	G	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.518;QD=1.07;ReadPosRankSum=0.995;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr7	100333425	.	TCTC	T	3444.73	.	AC=2;AF=1.00;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	100391644	rs314340	T	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	100393141	rs314343	C	G	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	100395003	rs314344	G	C	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	100401270	rs314348	T	G	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	100403429	rs3847060	A	G	142.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	100410657	rs314358	A	G	14262.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr7	100411278	rs314359	T	C	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr7	100416052	rs73170800	A	G	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	100416250	rs144173	A	G	10186.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr7	100420155	rs56173078	A	G	10558.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,415:1.00:415
chr7	100421781	rs41280995	C	T	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.097;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	100424586	rs35907339	CG	C	209.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.273;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:126,25:0.17:151
chr7	100424587	rs2304374	G	C	2598.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=0.619;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:29,122:0.81:151
chr7	100459265	rs111459384	CTT	C	3424.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	100465619	rs66775024	C	T	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	100467975	rs10627414	C	CCT	2259.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=43.46;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	100470474	.	C	CT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-0.799;QD=2.68;ReadPosRankSum=0.093;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr7	100478763	rs57137266	CG	C	408.75	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr7	100486656	rs13241786	T	G	9310.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=0.355;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:2,366:0.99:368
chr7	100491149	rs113406515	C	T	6459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.523;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:364,327:0.47:691
chr7	100494222	rs66793456	G	GC	6965.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	100547148	.	GCAA	G	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.13;ReadPosRankSum=-1.599;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr7	100547155	rs74789991	C	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.60;ReadPosRankSum=0.138;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	100547173	rs75482949	T	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=3.154;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr7	100547175	rs78695034	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=3.117;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr7	100547182	rs76728014	C	T	184.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=2.727;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr7	100547183	.	GC	G	172.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.290;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=2.773;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr7	100547185	.	C	T	184.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=2.270;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr7	100547189	.	GGGCCAC	G	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=2.298;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr7	100547211	rs79277565	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.437;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr7	100547215	rs77163569	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.806;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr7	100547220	rs77805555	A	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-1.362;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr7	100547225	rs77066311	T	C	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-1.737;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr7	100547227	rs76736259	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-2.195;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	100547238	rs79636720	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr7	100547278	rs73163737	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.466;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr7	100547281	rs73163738	C	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.014;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr7	100547299	rs78614597	G	T	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.799;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr7	100547307	rs76308179	GT	AG	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=9.17;ReadPosRankSum=1.582;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr7	100547323	rs75534608	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr7	100547335	rs75081026	A	G	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.010;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.935;QD=12.17;ReadPosRankSum=-0.401;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:49,26:0.35:75
chr7	100547342	rs76223352	T	C	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.955;QD=12.01;ReadPosRankSum=-0.751;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:50,26:0.34:76
chr7	100547349	rs75600589	A	G	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.328;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.915;QD=12.38;ReadPosRankSum=-0.739;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:48,26:0.35:74
chr7	100547410	rs79723667	G	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	100547525	rs142704104	ACC	A	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	100549505	rs74588241	T	C	3005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.210;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=4.411;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.956;QD=5.60;ReadPosRankSum=-1.131;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:437,100:0.19:537
chr7	100549512	rs77667788	A	T	3382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.181;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=5.580;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.895;QD=5.98;ReadPosRankSum=-0.705;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:457,109:0.19:566
chr7	100549516	rs76951301	C	A	3811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=5.419;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.807;QD=6.37;ReadPosRankSum=-1.090;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:477,121:0.20:598
chr7	100549527	rs77426926	A	G	4584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=6.583;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.737;QD=6.95;ReadPosRankSum=-0.002;SOR=1.264;set=HC	GT:AD:AF:DP	0/1:521,139:0.21:660
chr7	100549530	rs77626205	A	G	4719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.049;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=7.801;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.688;QD=6.91;ReadPosRankSum=-0.009;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:535,148:0.22:683
chr7	100549537	rs75781078	G	A	5258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.427;ClippingRankSum=0.000;DB;DP=728;ExcessHet=3.0103;FS=10.832;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.601;QD=7.31;ReadPosRankSum=0.272;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:555,164:0.23:719
chr7	100549540	.	A	C	5498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.402;ClippingRankSum=0.000;DP=744;ExcessHet=3.0103;FS=12.264;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.588;QD=7.48;ReadPosRankSum=0.747;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:566,169:0.23:735
chr7	100549543	rs79492129	G	A	5744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.877;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=13.817;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.540;QD=7.68;ReadPosRankSum=0.705;SOR=1.698;set=HC	GT:AD:AF:DP	0/1:571,177:0.24:748
chr7	100549547	rs77743944	TG	CC	7631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.163;ClippingRankSum=0.000;DB;DP=778;ExcessHet=3.0103;FS=13.817;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.512;QD=9.92;ReadPosRankSum=1.114;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:584,185:0.24:769
chr7	100549573	rs73163748	G	T	10423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=1.424;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:617,286:0.32:903
chr7	100549583	rs73163749	G	A	11837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=922;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=1.042;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:595,320:0.35:915
chr7	100549592	rs73163750	TT	AA	12286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=1.847;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.350;QD=13.04;ReadPosRankSum=2.994;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:609,333:0.35:942
chr7	100549650	rs73398716	A	G	8117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=1207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-0.838;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:734,464:0.39:1198
chr7	100549697	rs77036391	A	G	20292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.980;ClippingRankSum=0.000;DB;DP=1382;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.828;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:818,556:0.40:1374
chr7	100549703	rs78164286	C	T	20265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=1382;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=1.276;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:814,559:0.41:1373
chr7	100549787	rs73714227	CA	TG	21352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;ClippingRankSum=0.000;DB;DP=1268;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.15;ReadPosRankSum=1.006;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:681,564:0.45:1245
chr7	100549840	rs75741102	C	T	9817.77	.	AC=1;AF=0.500;AN=2;DB;DP=1310;set=Intersection	GT:AD:AF:DP	0/1:762,530:0.41:1292
chr7	100549873	rs74193966	G	A	15186.77	.	AC=1;AF=0.500;AN=2;DB;DP=1108;set=Intersection	GT:AD:AF:DP	0/1:670,428:0.39:1098
chr7	100549884	rs73163752	C	T	15018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=0.000;DB;DP=1113;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=2.061;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:699,405:0.37:1104
chr7	100549894	rs78007565	T	C	15699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DB;DP=1086;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.842;QD=14.58;ReadPosRankSum=-0.162;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:677,400:0.37:1077
chr7	100549896	rs79035545	G	C	15995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.448;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.826;QD=14.87;ReadPosRankSum=-0.811;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:672,404:0.38:1076
chr7	100549902	rs75991009	C	T	15974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.259;ClippingRankSum=0.000;DB;DP=1089;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.184;QD=14.78;ReadPosRankSum=-2.604;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:663,418:0.39:1081
chr7	100549914	rs73714228	G	A	15755.77	.	AC=1;AF=0.500;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	0/1:654,409:0.38:1063
chr7	100549935	rs73714229	T	G	15175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=1058;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.229;QD=14.45;ReadPosRankSum=-1.160;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:654,396:0.38:1050
chr7	100549942	rs73714230	T	C	14780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=1050;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.184;QD=14.18;ReadPosRankSum=-1.248;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:639,403:0.39:1042
chr7	100549979	rs73398717	C	T	8584.77	.	AC=1;AF=0.500;AN=2;DB;DP=1088;set=Intersection	GT:AD:AF:DP	0/1:610,460:0.43:1070
chr7	100550032	rs111723000	C	CCCT	14111.73	.	AC=1;AF=0.500;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	0/1:459,363:0.44:822
chr7	100550079	rs28379747	A	C	7149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=898;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-0.661;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:515,377:0.42:892
chr7	100550133	rs74197937	A	G	16155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=966;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=16.81;ReadPosRankSum=0.883;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:534,427:0.44:961
chr7	100550138	rs73714233	C	T	16175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.367;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=16.57;ReadPosRankSum=1.513;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:543,433:0.44:976
chr7	100550184	rs73714234	C	A	11772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.907;ClippingRankSum=0.000;DB;DP=911;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=13.01;ReadPosRankSum=1.410;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:542,363:0.40:905
chr7	100550203	rs75141335	T	A	10341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=12.88;ReadPosRankSum=1.005;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:526,277:0.34:803
chr7	100550205	rs77471356	A	C	9974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=800;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=12.58;ReadPosRankSum=0.605;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:522,271:0.34:793
chr7	100550245	rs66732041	G	A	3976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=783;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.503;QD=5.13;ReadPosRankSum=-3.022;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:620,155:0.20:775
chr7	100550252	rs67587735	A	G	4370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.995;QD=6.04;ReadPosRankSum=-3.910;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:579,145:0.20:724
chr7	100550271	rs71540914	A	G	2542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-3.409;QD=3.70;ReadPosRankSum=-7.941;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:587,101:0.15:688
chr7	100550281	.	C	CTCA	2028.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.436;ClippingRankSum=0.000;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-4.498;QD=3.05;ReadPosRankSum=-9.686;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:579,86:0.13:665
chr7	100550326	rs111371899	ACA	GTG	3406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.495;ClippingRankSum=0.000;DB;DP=868;ExcessHet=3.0103;FS=0.752;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-11.661;QD=4.02;ReadPosRankSum=-0.856;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:718,129:0.15:847
chr7	100550338	rs75318416	GG	CA	7918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.047;ClippingRankSum=0.000;DB;DP=887;ExcessHet=3.0103;FS=1.254;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-7.454;QD=9.10;ReadPosRankSum=-0.328;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:637,233:0.27:870
chr7	100550342	rs74184351	T	C	8812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.176;ClippingRankSum=0.000;DB;DP=874;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-7.091;QD=10.27;ReadPosRankSum=-0.010;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:628,230:0.27:858
chr7	100550348	.	A	C	1375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DP=909;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.318;QD=1.54;ReadPosRankSum=-0.503;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:803,91:0.10:894
chr7	100550358	rs74184446	C	T	4012.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.741;ClippingRankSum=0.000;DB;DP=914;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-2.702;QD=5.21;ReadPosRankSum=-0.613;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:633,137:0.18:770
chr7	100550360	.	T	C	2074.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.278;ClippingRankSum=0.000;DP=882;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-4.012;QD=2.42;ReadPosRankSum=-0.386;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:752,105:0.12:857
chr7	100550364	rs74188306	C	T	5032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.426;ClippingRankSum=0.000;DB;DP=883;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-10.013;QD=5.77;ReadPosRankSum=-0.605;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:712,160:0.18:872
chr7	100550376	.	C	T	1744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DP=914;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.130;QD=2.09;ReadPosRankSum=2.181;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:743,91:0.11:834
chr7	100550384	rs77636516	C	T	1674.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=938;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.540;QD=1.80;ReadPosRankSum=2.088;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:826,102:0.11:928
chr7	100550385	.	C	A	816.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.440;ClippingRankSum=0.000;DP=936;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-4.983;QD=0.88;ReadPosRankSum=-2.229;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:847,79:0.09:926
chr7	100550389	.	A	G	2032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DP=926;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.128;QD=2.23;ReadPosRankSum=0.115;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:810,100:0.11:910
chr7	100550395	.	A	G	1570.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.467;QD=1.70;ReadPosRankSum=0.548;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:823,99:0.11:922
chr7	100550396	rs74213821	G	C	13501.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.060;ClippingRankSum=0.000;DB;DP=936;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-4.410;QD=14.61;ReadPosRankSum=-1.726;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:551,373:0.40:924
chr7	100550400	.	G	A	1857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DP=936;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.404;QD=2.03;ReadPosRankSum=3.072;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:808,108:0.12:916
chr7	100550421	.	C	A	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DP=899;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.427;QD=2.11;ReadPosRankSum=1.769;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:787,102:0.11:889
chr7	100550427	.	C	T	1846.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.434;ClippingRankSum=0.000;DP=881;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.994;QD=2.12;ReadPosRankSum=2.828;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:772,101:0.12:873
chr7	100550428	.	C	T	1843.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DP=893;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.018;QD=2.08;ReadPosRankSum=3.219;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:785,101:0.11:886
chr7	100550432	rs111924697	C	T	2427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.467;ClippingRankSum=0.000;DB;DP=900;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.084;QD=2.72;ReadPosRankSum=-1.124;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:772,120:0.13:892
chr7	100550439	rs79004610	C	T	2675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.792;ClippingRankSum=0.000;DB;DP=865;ExcessHet=3.0103;FS=3.925;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.923;QD=3.11;ReadPosRankSum=0.558;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:741,118:0.14:859
chr7	100550442	.	C	T	6175.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-3.541;QD=7.33;ReadPosRankSum=1.796;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:651,191:0.23:842
chr7	100550443	.	A	G	1063.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.045;ClippingRankSum=0.000;DP=833;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.322;QD=1.28;ReadPosRankSum=0.118;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:753,76:0.09:829
chr7	100550447	.	C	T	3973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DP=824;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.555;QD=4.85;ReadPosRankSum=-1.261;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:675,145:0.18:820
chr7	100550452	.	A	T	4023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=789;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.521;QD=5.13;ReadPosRankSum=-1.248;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:643,142:0.18:785
chr7	100550462	rs372836845	C	T	1196.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.426;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-3.098;QD=1.65;ReadPosRankSum=-2.590;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:648,78:0.11:726
chr7	100550463	.	T	G	14192.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.570;ClippingRankSum=0.000;DP=709;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.619;QD=20.13;ReadPosRankSum=1.642;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:375,330:0.47:705
chr7	100550466	rs75319202	C	T	6993.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.138;QD=10.17;ReadPosRankSum=-1.335;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:488,200:0.29:688
chr7	100550467	rs78312717	A	G	11487.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.821;QD=16.75;ReadPosRankSum=1.184;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:390,296:0.43:686
chr7	100550471	.	T	C	2250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DP=688;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.535;QD=3.29;ReadPosRankSum=2.865;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:588,96:0.14:684
chr7	100550473	rs77401364	G	A	11179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.735;QD=17.44;ReadPosRankSum=1.732;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:354,287:0.45:641
chr7	100550478	rs79412130	C	T	7947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.845;QD=12.28;ReadPosRankSum=0.071;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:428,219:0.34:647
chr7	100550484	.	A	C	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.322;ClippingRankSum=0.000;DP=592;ExcessHet=3.0103;FS=4.159;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-7.592;QD=2.50;ReadPosRankSum=2.939;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:484,69:0.12:553
chr7	100550486	.	G	A	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;ClippingRankSum=0.000;DP=584;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.138;QD=0.76;ReadPosRankSum=1.594;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:500,45:0.08:545
chr7	100550490	.	G	A	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.946;QD=3.11;ReadPosRankSum=1.835;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:436,80:0.16:516
chr7	100550501	.	T	G	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DP=476;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.230;QD=1.18;ReadPosRankSum=2.040;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:399,45:0.10:444
chr7	100550508	.	A	T	4666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.090;ClippingRankSum=0.000;DP=428;ExcessHet=3.0103;FS=3.637;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-4.647;QD=13.61;ReadPosRankSum=1.230;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:218,125:0.36:343
chr7	100550510	.	A	C	2758.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DP=412;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.673;QD=8.57;ReadPosRankSum=0.849;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:223,99:0.31:322
chr7	100550511	rs74435283	G	C	1689.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=1.730;QD=5.11;ReadPosRankSum=-1.862;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:271,60:0.18:331
chr7	100550514	rs78262970	T	C	1458.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.786;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=3.350;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-8.224;QD=4.16;ReadPosRankSum=3.844;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:297,54:0.15:351
chr7	100550515	.	T	A	3018.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.194;ClippingRankSum=0.000;DP=375;ExcessHet=3.0103;FS=4.867;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=2.148;QD=8.65;ReadPosRankSum=-0.885;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:260,89:0.26:349
chr7	100550520	rs77013428	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.253;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-0.475;QD=1.84;ReadPosRankSum=1.813;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:302,37:0.11:339
chr7	100550522	rs76664943	C	G	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.693;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=6.316;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-8.334;QD=4.03;ReadPosRankSum=3.906;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:273,53:0.16:326
chr7	100550525	.	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DP=334;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=1.193;QD=1.02;ReadPosRankSum=1.483;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:286,30:0.09:316
chr7	100550534	.	C	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=3.623;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=1.235;QD=0.82;ReadPosRankSum=0.441;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:270,28:0.09:298
chr7	100550544	rs75037819	A	C	1654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.571;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=22.667;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-7.265;QD=5.95;ReadPosRankSum=2.522;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:226,52:0.19:278
chr7	100550549	.	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=1.225;QD=0.47;ReadPosRankSum=-1.715;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:260,23:0.08:283
chr7	100550552	rs77957081	A	T	1753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.750;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=34.903;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-6.664;QD=6.38;ReadPosRankSum=0.795;SOR=2.297;set=HC	GT:AD:AF:DP	0/1:217,58:0.21:275
chr7	100550562	rs78069287	G	A	1897.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.985;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=47.070;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-6.637;QD=6.59;ReadPosRankSum=-0.031;SOR=2.743;set=HC	GT:AD:AF:DP	0/1:227,61:0.21:288
chr7	100550563	rs77561545	A	G	1219.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.141;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=32.760;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-0.274;QD=4.26;ReadPosRankSum=-0.749;SOR=2.553;set=HC	GT:AD:AF:DP	0/1:240,46:0.16:286
chr7	100550564	rs75269566	C	T	1891.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.373;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=54.190;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-6.620;QD=6.71;ReadPosRankSum=-0.388;SOR=2.905;set=HC	GT:AD:AF:DP	0/1:222,60:0.21:282
chr7	100550568	rs78115301	T	A	1273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.338;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=37.094;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-0.072;QD=4.74;ReadPosRankSum=-2.988;SOR=2.649;set=HC	GT:AD:AF:DP	0/1:221,48:0.18:269
chr7	100550570	rs76035900	T	C	4694.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.076;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=24.076;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-4.523;QD=17.72;ReadPosRankSum=-1.254;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:145,120:0.45:265
chr7	100550571	rs146166922	G	C	2675.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=7.063;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-5.257;QD=12.16;ReadPosRankSum=0.743;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:147,73:0.33:220
chr7	100550577	.	C	T	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=0.916;QD=6.89;ReadPosRankSum=2.745;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:213,60:0.22:273
chr7	100550583	rs71888665	AACCACC	A	1867.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=0.830;QD=7.05;ReadPosRankSum=0.754;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:206,59:0.22:265
chr7	100550589	rs80123018	C	G	304.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.921;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=12.763;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-0.607;QD=1.20;ReadPosRankSum=-3.533;SOR=1.870;set=HC	GT:AD:AF:DP	0/1:229,24:0.09:253
chr7	100550595	rs80315860	T	C	387.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.205;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=24.549;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.716;QD=1.46;ReadPosRankSum=-5.183;SOR=2.466;set=HC	GT:AD:AF:DP	0/1:236,30:0.11:266
chr7	100550596	rs74991890	G	A	464.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.018;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=24.826;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-0.739;QD=1.72;ReadPosRankSum=-5.018;SOR=2.499;set=HC	GT:AD:AF:DP	0/1:240,30:0.11:270
chr7	100550601	rs79112841	C	A	2080.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.255;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.788;QD=7.28;ReadPosRankSum=2.710;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:222,64:0.22:286
chr7	100550602	rs80036331	T	A	4149.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.071;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=28.608;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-3.731;QD=14.36;ReadPosRankSum=-2.919;SOR=1.677;set=HC	GT:AD:AF:DP	0/1:182,107:0.37:289
chr7	100550604	rs74878158	C	A	2125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-1.745;QD=7.28;ReadPosRankSum=0.960;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:222,70:0.24:292
chr7	100551106	rs62483697	A	G	30664.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.741;ClippingRankSum=0.000;DB;DP=1425;ExcessHet=3.0103;FS=3.023;MLEAC=2;MLEAF=1.000;MQ=58.55;MQRankSum=34.558;QD=24.41;ReadPosRankSum=5.472;SOR=0.050;set=HC	GT:AD:AF:DP	1/1:21,1235:0.98:1256
chr7	100551220	rs79017193	G	C	22696.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=26.55;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,855:1.00:855
chr7	100551370	rs78124935	AG	TC	13265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=966;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.274;QD=14.10;ReadPosRankSum=-0.310;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:583,358:0.38:941
chr7	100551376	rs75808610	C	A	13530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=959;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.271;QD=14.46;ReadPosRankSum=-0.647;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:579,357:0.38:936
chr7	100551390	rs77795035	T	A	13180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.293;QD=14.65;ReadPosRankSum=0.630;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:564,336:0.37:900
chr7	100551392	rs75008337	CG	TA	12421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.417;ClippingRankSum=0.000;DB;DP=901;ExcessHet=3.0103;FS=0.536;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.305;QD=14.02;ReadPosRankSum=1.111;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:559,327:0.37:886
chr7	100551397	rs79748732	G	T	12162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.140;ClippingRankSum=0.000;DB;DP=883;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.301;QD=14.00;ReadPosRankSum=1.349;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:547,322:0.37:869
chr7	100551400	rs75496565	G	A	11839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.948;ClippingRankSum=0.000;DB;DP=858;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.295;QD=14.01;ReadPosRankSum=1.455;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:530,315:0.37:845
chr7	100551433	rs73398732	T	C	11971.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:485,335:0.41:820
chr7	100551445	rs113821643	C	G	11500.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:318,440:0.58:758
chr7	100551461	rs78826835	C	G	12144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=16.57;ReadPosRankSum=0.646;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:439,294:0.40:733
chr7	100551471	rs78831742	T	C	11231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=1.407;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:434,284:0.40:718
chr7	100551473	rs79233494	G	C	10931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=1.355;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:431,284:0.40:715
chr7	100551476	rs74460367	C	T	10577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=1.419;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:429,284:0.40:713
chr7	100551533	rs112228251	G	T	7349.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:297,356:0.55:653
chr7	100551565	rs73163757	AT	GC	11309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.614;QD=16.81;ReadPosRankSum=1.754;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:380,293:0.44:673
chr7	100551578	rs78584246	T	G	10815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.719;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.607;QD=16.31;ReadPosRankSum=0.594;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:373,290:0.44:663
chr7	100551626	rs73714238	T	C	21166.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr7	100551637	rs112753297	C	CCAA	7758.73	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:351,209:0.37:560
chr7	100551646	rs77153975	A	G	7801.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:358,207:0.37:565
chr7	100551662	rs78684063	C	T	7009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.757;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:348,182:0.34:530
chr7	100551666	rs74318947	A	T	6938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=0.447;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:342,181:0.35:523
chr7	100551687	rs73714240	T	C	7085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-0.493;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:326,188:0.37:514
chr7	100551692	rs73714242	C	T	6792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-0.919;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:308,184:0.37:492
chr7	100551719	rs73714243	C	T	7608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-0.642;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:330,208:0.39:538
chr7	100551729	rs73714244	C	T	8137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-1.232;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:346,235:0.40:581
chr7	100551773	rs73398734	C	A	10676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=1.987;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:398,279:0.41:677
chr7	100551778	rs73714247	G	A	10950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=1.435;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:400,287:0.42:687
chr7	100551793	rs73398735	G	T	10530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=1.356;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:420,296:0.41:716
chr7	100551840	rs78273697	T	A	10602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.853;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=0.479;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:391,280:0.42:671
chr7	100551842	rs75365561	CT	TC	10796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.501;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=1.115;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.11;ReadPosRankSum=0.356;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:389,281:0.42:670
chr7	100551849	rs77242346	A	T	10581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.312;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=0.180;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:379,281:0.43:660
chr7	100551912	rs111656197	G	A	8620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-2.355;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:403,424:0.51:827
chr7	100551997	rs112386500	G	T	10314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=1047;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.505;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:525,518:0.50:1043
chr7	100552018	rs76249962	T	G	17012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DB;DP=990;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=1.941;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:537,451:0.46:988
chr7	100552020	rs78680358	C	T	17194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=977;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=2.617;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:538,437:0.45:975
chr7	100552044	rs73714250	T	G	8208.77	.	AC=1;AF=0.500;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	0/1:465,375:0.45:840
chr7	100552094	rs62483698	G	C	28995.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,652:1.00:652
chr7	100552117	rs62483699	G	T	6616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.303;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:335,298:0.47:633
chr7	100552135	rs62483700	T	C	11780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.45;ReadPosRankSum=0.862;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:343,332:0.49:675
chr7	100552149	rs113329327	T	C	7199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-1.051;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:360,356:0.50:716
chr7	100552160	rs112516377	C	G	7466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=743;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-1.649;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:366,367:0.50:733
chr7	100552251	rs9691900	T	C	7197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-0.441;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:387,365:0.49:752
chr7	100552311	rs12535515	C	T	5599.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:356,290:0.45:646
chr7	100552338	rs73398798	C	T	8400.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:311,247:0.44:558
chr7	100552358	rs73714254	C	G	7803.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:303,202:0.40:505
chr7	100552371	rs73714255	C	G	6621.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:300,171:0.36:471
chr7	100552384	rs75597914	A	G	6005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.695;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-0.384;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:282,161:0.36:443
chr7	100552390	rs73714257	T	C	5786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.641;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=0.109;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:283,155:0.35:438
chr7	100552412	rs73714259	T	C	5328.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:262,144:0.35:406
chr7	100552435	rs76244845	TC	AT	6225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.538;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=-1.784;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:254,154:0.38:408
chr7	100552440	rs80290400	C	T	5786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.249;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-0.924;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:258,159:0.38:417
chr7	100552535	rs73163758	G	A	21023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=1139;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.045;QD=18.75;ReadPosRankSum=2.489;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:586,535:0.48:1121
chr7	100552536	rs73163759	T	C	52252.77	.	AC=2;AF=1.00;AN=2;DB;DP=1154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=46.04;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,1135:1.00:1135
chr7	100552549	rs73163760	C	A	23269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=1383;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.013;QD=17.19;ReadPosRankSum=0.689;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:687,667:0.49:1354
chr7	100552550	rs73163762	T	C	59348.77	.	AC=2;AF=1.00;AN=2;DB;DP=1405;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=43.13;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,1376:1.00:1376
chr7	100552627	rs112039162	A	G	42639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=2255;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=-0.282;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:1092,1127:0.51:2219
chr7	100552640	rs112964636	A	C	44475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.461;ClippingRankSum=0.000;DB;DP=2455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-1.712;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:1162,1258:0.52:2420
chr7	100552644	rs2904850	C	A	42797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.886;ClippingRankSum=0.000;DB;DP=2468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=1.721;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:1267,1166:0.48:2433
chr7	100552657	rs75471530	A	G	43972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;ClippingRankSum=0.000;DB;DP=2456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.533;QD=18.13;ReadPosRankSum=5.039;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:1311,1115:0.46:2426
chr7	100552659	rs78182596	T	C	43658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;ClippingRankSum=0.000;DB;DP=2451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.540;QD=18.03;ReadPosRankSum=5.419;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:1314,1108:0.46:2422
chr7	100552675	rs73163764	C	T	40650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.684;ClippingRankSum=0.000;DB;DP=2525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.594;QD=16.25;ReadPosRankSum=6.951;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:1400,1102:0.44:2502
chr7	100552711	rs75799835	T	A	37352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.583;ClippingRankSum=0.000;DB;DP=2333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.630;QD=16.11;ReadPosRankSum=-3.585;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:1323,996:0.43:2319
chr7	100552713	rs75130157	A	G	37685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.476;ClippingRankSum=0.000;DB;DP=2301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.635;QD=16.47;ReadPosRankSum=-3.987;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:1309,979:0.43:2288
chr7	100552727	rs74529310	G	C	35547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.180;ClippingRankSum=0.000;DB;DP=2167;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.347;QD=16.50;ReadPosRankSum=-6.747;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:1248,907:0.42:2155
chr7	100552738	rs79874934	CA	TG	30311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.314;ClippingRankSum=0.000;DB;DP=2016;ExcessHet=3.0103;FS=1.788;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.778;QD=15.13;ReadPosRankSum=-2.789;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:1227,776:0.39:2003
chr7	100552788	rs73398800	C	T	10749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=0.000;DB;DP=1366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=1.473;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:790,562:0.42:1352
chr7	100552837	rs73714264	G	A	13224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=0.501;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:490,378:0.44:868
chr7	100552854	rs73714265	G	A	12520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=777;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.52;ReadPosRankSum=-1.635;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:420,338:0.45:758
chr7	100552867	rs73714266	T	C	28411.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.54;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,684:1.00:684
chr7	100552915	rs2904852	A	C	24607.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr7	100552978	rs73163765	T	C	8774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.004;QD=19.24;ReadPosRankSum=-0.609;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:230,226:0.50:456
chr7	100552984	rs73163766	T	C	8950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.004;QD=19.54;ReadPosRankSum=-0.251;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:231,227:0.50:458
chr7	100553002	rs68094465	A	G	8196.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:256,232:0.48:488
chr7	100553073	rs73714269	T	A	6684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=0.106;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:207,179:0.46:386
chr7	100553077	rs73714270	A	C	6636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.47;ReadPosRankSum=1.065;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:208,172:0.45:380
chr7	100553105	rs111809465	C	G	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:93,100:0.52:193
chr7	100553117	rs73400705	G	A	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:89,85:0.49:174
chr7	100555116	rs34281234	A	AT	884.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-2.040;QD=11.06;ReadPosRankSum=0.014;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:19,61:0.76:80
chr7	100606332	.	A	AT	780.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-0.564;QD=13.94;ReadPosRankSum=2.292;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:8,48:0.86:56
chr7	100606918	rs4316092	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	100607640	.	G	GCT	3857.73	.	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.46;SOR=2.185;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	100607642	.	C	T	1069	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=23;MQ=60.0;NF=46;NR=16;PP=1069;QD=17.8027614927;SC=TGACCTCTGCCCTCTTTCCCC;SbPval=0.74;Source=Platypus;TC=76;TCF=53;TCR=23;TR=62;WE=100607654;WS=100607630;set=Platypus	GT:AD:AF:DP	1/1:14,62:0.82:76
chr7	100607643	.	CTCT	C,CCT	3906.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=91;set=Intersection	GT:AF:DP	1/1:1.00:90
chr7	100607700	.	CAT	C	3310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=2.969;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:228,176:0.44:404
chr7	100607707	.	T	G	7052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=2.631;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:236,185:0.44:421
chr7	100607709	.	C	CCT	7071.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;ClippingRankSum=0.000;DP=442;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=3.136;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:249,187:0.43:436
chr7	100607851	rs6960854	C	G	6728.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr7	100607871	rs6960868	C	T	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	100607903	rs6961167	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr7	100608154	rs10250885	G	A	2849.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.66;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	100608154	.	GGATAAGGGAGAG	AGATAAGGGAGAG,AGATGAGGCAGGC	2321	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=5;HapScore=1;MGOF=24;MMLQ=27;MQ=60.1;NF=53,11;NR=7,0;PP=2321,389;QD=39.2628535425;SC=TATTCAGGGGGGATAAGGGAG;SbPval=0.39;Source=Platypus;TC=71;TCF=64;TCR=7;TR=60,11;WE=100608174;WS=100608144;set=Platypus	GT:AF:DP	0/1:0.85:71
chr7	100608158	rs79221376	A	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.982;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=7.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-1.270;SOR=2.121;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr7	100608162	rs79761591	G	C	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.781;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=13.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.989;SOR=2.820;set=HC	GT:AD:AF:DP	0/1:100,21:0.17:121
chr7	100608165	rs76431635	A	G	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=25.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-1.314;SOR=3.639;set=HC	GT:AD:AF:DP	0/1:114,26:0.19:140
chr7	100608166	rs75884804	G	C	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=28.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.828;SOR=3.719;set=HC	GT:AD:AF:DP	0/1:120,26:0.18:146
chr7	100608180	rs77646533	C	G	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.480;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=51.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.768;SOR=4.834;set=HC	GT:AD:AF:DP	0/1:160,39:0.20:199
chr7	100608188	.	C	CT	1313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.743;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=57.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-0.214;SOR=4.436;set=HC	GT:AD:AF:DP	0/1:183,45:0.20:228
chr7	100608190	.	C	T	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.536;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=56.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=0.551;SOR=4.418;set=HC	GT:AD:AF:DP	0/1:192,46:0.19:238
chr7	100608194	.	C	CGTCTGGG	1885.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.880;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=67.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=0.900;SOR=4.719;set=HC	GT:AD:AF:DP	0/1:207,49:0.19:256
chr7	100608196	rs77373587	C	G	2192.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.922;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=87.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=0.954;SOR=5.202;set=HC	GT:AD:AF:DP	0/1:212,61:0.22:273
chr7	100608197	.	A	AGGG	2168.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.075;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=92.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=1.035;SOR=5.296;set=HC	GT:AD:AF:DP	0/1:220,63:0.22:283
chr7	100608201	rs77005990	C	T	2227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.316;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=85.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.802;SOR=4.450;set=HC	GT:AD:AF:DP	0/1:233,72:0.24:305
chr7	100608247	rs73163788	T	C	9498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=7.792;QD=13.34;ReadPosRankSum=-0.923;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:459,253:0.36:712
chr7	100608255	rs79638688	C	G	9937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;ClippingRankSum=0.000;DB;DP=872;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=11.261;QD=11.54;ReadPosRankSum=3.099;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:585,276:0.32:861
chr7	100608264	rs73163789	T	A	13809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.082;ClippingRankSum=0.000;DB;DP=948;ExcessHet=3.0103;FS=5.491;MLEAC=1;MLEAF=0.500;MQ=60.96;MQRankSum=-14.036;QD=14.75;ReadPosRankSum=-3.622;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:301,635:0.68:936
chr7	100608268	rs141757611	C	CCTTAACCCCTTGAT	13965.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.752;ClippingRankSum=0.000;DB;DP=971;ExcessHet=3.0103;FS=7.736;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=14.704;QD=14.55;ReadPosRankSum=3.786;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:653,307:0.32:960
chr7	100608370	rs73714276	A	C	17553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.589;ClippingRankSum=0.000;DB;DP=949;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=61.89;MQRankSum=13.950;QD=18.85;ReadPosRankSum=-0.727;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:461,470:0.50:931
chr7	100608375	rs75592954	G	A	17076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=879;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=61.75;MQRankSum=13.003;QD=19.79;ReadPosRankSum=0.102;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:433,430:0.50:863
chr7	100608406	rs77168191	AT	GC	8590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=4.303;QD=18.84;ReadPosRankSum=1.174;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:231,225:0.49:456
chr7	100608411	rs79831534	C	T	8402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.008;QD=19.54;ReadPosRankSum=1.518;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:220,210:0.49:430
chr7	100608416	rs77070494	C	T	8160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.343;QD=19.81;ReadPosRankSum=0.586;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:205,207:0.50:412
chr7	100608419	rs79505270	CT	GG	7932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.386;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=20.45;ReadPosRankSum=0.121;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:190,198:0.51:388
chr7	100608423	rs77841377	C	T	7185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.804;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=2.390;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=20.07;ReadPosRankSum=1.062;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:180,178:0.50:358
chr7	100608467	rs139602002	C	CT	1456.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:65,66:0.50:131
chr7	100608472	rs10251045	C	G	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	100608493	rs77278976	T	C	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.448;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-1.317;QD=18.31;ReadPosRankSum=-2.022;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:30,34:0.53:64
chr7	100608498	rs77518728	A	C	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.431;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-1.427;QD=18.73;ReadPosRankSum=-0.887;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr7	100608502	rs76981580	T	C	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.293;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-1.479;QD=19.22;ReadPosRankSum=-0.720;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr7	100608572	rs10251414	G	C	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr7	100608710	rs62483706	A	C	8351.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:386,422:0.52:808
chr7	100608778	rs73163792	TC	CT	13229.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;JOINED;set=Intersection	GT:AD:AF:DP	0/1:395,352:0.47:747
chr7	100608826	rs73163794	C	G	5348.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:293,274:0.48:567
chr7	100608868	rs67377634	A	G	5714.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:159,161:0.50:320
chr7	100608884	rs73163797	G	A	5089.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:125,131:0.51:256
chr7	100608912	rs73163798	A	G	3138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.91;ReadPosRankSum=0.283;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:83,83:0.50:166
chr7	100608920	rs2904863	T	C	3041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.55;ReadPosRankSum=-1.768;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:71,77:0.52:148
chr7	100608929	rs80040741	G	T	2427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.48;ReadPosRankSum=-1.938;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:59,54:0.48:113
chr7	100608953	rs78404383	TA	CT	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.486;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=12.327;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=0.027;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr7	100608958	rs76888130	T	C	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=10.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-0.680;SOR=2.331;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr7	100608961	rs74773493	C	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.060;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=7.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-0.768;SOR=2.027;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr7	100608964	rs77850164	G	T	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-0.779;SOR=1.987;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr7	100609987	rs10274460	T	C	11880.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr7	100612718	rs73168324	G	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr7	100612719	rs75025483	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.588;QD=6.49;ReadPosRankSum=0.123;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr7	100612722	rs78932709	C	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.753;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.588;QD=6.49;ReadPosRankSum=0.123;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr7	100612726	rs75900388	G	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.216;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-1.420;QD=10.87;ReadPosRankSum=-0.427;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr7	100612727	rs79419298	A	G	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.962;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-1.420;QD=10.87;ReadPosRankSum=-0.427;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr7	100612729	rs80202469	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.866;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.927;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-1.359;QD=9.72;ReadPosRankSum=-0.665;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr7	100612732	.	A	ATG	172.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.418;QD=8.64;ReadPosRankSum=-0.208;SOR=2.925;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr7	100612733	.	CAG	C	172.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.418;QD=8.64;ReadPosRankSum=0.208;SOR=2.925;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr7	100612766	rs71901679	CTGTCCAGGCACTT	C	541.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr7	100612786	rs73168325	G	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr7	100612839	rs76449674	A	G	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.064;QD=9.25;ReadPosRankSum=0.689;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:75,36:0.32:111
chr7	100612842	rs79514982	T	C	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.453;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.983;QD=9.09;ReadPosRankSum=0.056;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:77,40:0.34:117
chr7	100612865	rs78097765	C	T	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.960;QD=13.43;ReadPosRankSum=0.141;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:104,55:0.35:159
chr7	100612869	rs74554402	G	A	2257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.879;QD=13.52;ReadPosRankSum=-0.787;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:106,61:0.37:167
chr7	100612875	rs75162633	C	T	2222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.874;QD=12.92;ReadPosRankSum=-0.950;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:109,63:0.37:172
chr7	100612898	rs73168327	T	C	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:137,77:0.36:214
chr7	100612945	rs76619309	C	T	2673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.662;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.468;QD=10.96;ReadPosRankSum=1.242;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:166,78:0.32:244
chr7	100612952	rs79881008	G	A	2620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.526;QD=10.44;ReadPosRankSum=2.266;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:175,76:0.30:251
chr7	100612955	rs150485202	A	ACTG	2698.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:177,76:0.30:253
chr7	100612961	rs78487486	G	C	2764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=1.340;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:169,78:0.32:247
chr7	100612969	rs73168328	A	G	2714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.673;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=0.474;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:163,77:0.32:240
chr7	100612996	rs76589634	A	G	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:131,64:0.33:195
chr7	100613010	rs80354726	T	C	1974.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-0.991;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:109,55:0.34:164
chr7	100613011	rs79331440	G	A	1974.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-1.197;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:105,54:0.34:159
chr7	100613018	rs78041688	A	C	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-1.504;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:94,52:0.36:146
chr7	100613027	rs73168330	T	C	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=-0.281;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:90,46:0.34:136
chr7	100613059	rs66842488	GCCT	G	677.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr7	100613107	rs73168333	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.75;ReadPosRankSum=-0.809;SOR=3.312;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	100613112	rs75250895	G	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=6.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.92;ReadPosRankSum=-0.580;SOR=3.086;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr7	100613127	rs73168334	T	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.895;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.90;ReadPosRankSum=-1.519;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	100615281	rs73400789	A	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=2.170;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr7	100615311	rs79784813	A	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.23;ReadPosRankSum=0.248;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr7	100615313	rs79548447	G	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.23;ReadPosRankSum=0.035;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr7	100615321	rs75376427	G	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=-0.988;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr7	100615353	rs73168339	C	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=0.898;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr7	100615359	rs73168341	A	G	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.862;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr7	100615377	rs33957279	AC	A	777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=1.385;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr7	100615387	rs75466554	C	T	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=1.693;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr7	100615445	rs5021607	A	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.294;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.898;SOR=1.273;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr7	100615449	rs5021606	C	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.332;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.427;SOR=1.273;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr7	100615453	rs5021605	T	C	513.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.657;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=5.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.630;SOR=1.354;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr7	100615454	rs5021604	G	C	513.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.602;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.469;SOR=1.354;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr7	100615458	rs5021603	A	C	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.797;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.58;ReadPosRankSum=-0.732;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr7	100615460	rs5021602	A	G	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.635;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=-1.056;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr7	100615461	rs5021601	T	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.346;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=-1.077;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr7	100615477	rs5021600	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:55,14:0.20:69
chr7	100615494	rs33959976	GTA	G	219.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:53,10:0.16:63
chr7	100615500	rs77817912	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.487;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr7	100615503	rs33984975	CAG	C	192.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:49,9:0.16:58
chr7	100615521	rs79951460	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.390;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:49,5:0.09:54
chr7	100615525	rs76946448	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.450;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:49,5:0.09:54
chr7	100615531	rs79277318	T	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-0.360;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:44,4:0.08:48
chr7	100616121	rs77942150	G	C	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.447;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.598;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-0.607;SOR=2.395;set=HC	GT:AD:AF:DP	0/1:29,4:0.12:33
chr7	100616124	rs74811797	T	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.598;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.828;SOR=2.395;set=HC	GT:AD:AF:DP	0/1:29,4:0.12:33
chr7	100616133	rs79762862	A	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-2.001;QD=5.44;ReadPosRankSum=-1.267;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr7	100616140	rs78186722	G	T	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-2.111;QD=6.54;ReadPosRankSum=-0.710;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr7	100616146	rs79946603	T	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-1.962;QD=5.46;ReadPosRankSum=-1.215;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr7	100616149	rs75858772	T	A	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-2.000;QD=5.73;ReadPosRankSum=-0.881;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr7	100616151	rs78669523	G	A	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.928;QD=5.60;ReadPosRankSum=-1.237;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr7	100616181	rs76074645	C	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.924;QD=5.91;ReadPosRankSum=0.072;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr7	100616185	rs79851456	CA	TG	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.955;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.000;QD=5.42;ReadPosRankSum=0.744;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:82,20:0.20:102
chr7	100616195	rs77180957	GC	CT	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.051;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.882;QD=6.36;ReadPosRankSum=-0.475;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:87,24:0.22:111
chr7	100616199	rs78022349	T	C	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.915;QD=6.22;ReadPosRankSum=-0.443;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:90,24:0.21:114
chr7	100616227	rs75588135	A	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=4.65;ReadPosRankSum=1.301;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:102,26:0.20:128
chr7	100616229	rs78091742	G	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=0.741;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:96,26:0.21:122
chr7	100616245	rs79948354	C	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.256;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:95,19:0.17:114
chr7	100616258	rs73168346	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:101,22:0.18:123
chr7	100616277	rs117288840	A	G	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.857;QD=6.59;ReadPosRankSum=0.896;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:102,29:0.22:131
chr7	100616279	.	C	G	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.871;QD=6.91;ReadPosRankSum=0.752;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:100,28:0.22:128
chr7	100616288	rs201235128	G	T	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.686;QD=6.31;ReadPosRankSum=-0.386;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:94,26:0.22:120
chr7	100616310	rs199943216	G	C	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-3.045;QD=4.17;ReadPosRankSum=-0.773;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:79,17:0.18:96
chr7	100616313	rs200896810	T	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.263;QD=4.25;ReadPosRankSum=-0.352;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr7	100616320	rs200695576	G	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.291;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-3.532;QD=2.80;ReadPosRankSum=0.167;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:75,12:0.14:87
chr7	100616332	rs369342199	T	C	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-3.381;QD=3.29;ReadPosRankSum=-0.932;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:63,11:0.15:74
chr7	100616336	.	G	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.326;QD=3.43;ReadPosRankSum=-1.700;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr7	100616338	.	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.326;QD=3.47;ReadPosRankSum=-1.939;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr7	100616344	.	G	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-3.704;QD=2.82;ReadPosRankSum=-1.466;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:55,8:0.13:63
chr7	100624718	rs4363124	G	C	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	100624901	.	C	T	462.77	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	100634476	rs6980143	C	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	100634640	rs1791	T	G	14258.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=25.93;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,550:1.00:550
chr7	100634964	rs4370452	C	A	23542.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.175;ClippingRankSum=0.000;DB;DP=903;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;MQRankSum=-0.267;QD=26.60;ReadPosRankSum=1.827;SOR=0.337;set=HC	GT:AD:AF:DP	1/1:1,884:1.00:885
chr7	100635375	rs10808115	A	C	29671.77	.	AC=2;AF=1.00;AN=2;DB;DP=1179;set=Intersection	GT:AD:AF:DP	1/1:0,1160:1.00:1160
chr7	100635591	rs10953312	C	A	11797.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:1,417:1.00:418
chr7	100635661	rs10953313	T	C	48761.77	.	AC=2;AF=1.00;AN=2;DB;DP=1085;set=Intersection	GT:AD:AF:DP	1/1:0,1076:1.00:1076
chr7	100635679	rs10953314	C	G	51148.77	.	AC=2;AF=1.00;AN=2;DB;DP=1313;set=Intersection	GT:AD:AF:DP	1/1:5,1210:1.00:1215
chr7	100647819	rs11766024	C	T	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	100647875	rs11766048	C	A	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr7	100647920	rs11772963	A	C	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	100648029	rs10953315	G	A	7613.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr7	100648117	rs11766125	C	G	7718.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	100651855	rs12532750	A	G	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	100652317	rs12540832	T	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	100656003	rs3924886	G	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	100658717	rs10229453	T	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	100675976	rs56103274	G	A	19373.77	.	AC=2;AF=1.00;AN=2;DB;DP=797;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.39;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,763:1.00:763
chr7	100679902	rs55974941	A	G	26107.77	.	AC=2;AF=1.00;AN=2;DB;DP=1018;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=26.11;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,1000:1.00:1000
chr7	100681762	rs10953316	A	G	23744.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=26.06;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,911:1.00:911
chr7	100692341	rs4515470	C	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	100692680	rs10246021	T	G	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	100694854	rs67328257	G	A	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	100695058	rs6966570	T	C	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	100731505	rs4524722	C	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	100731829	rs6948536	T	C	7537.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr7	100775087	rs143613360	A	AAAC	923.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	100780176	rs2227694	A	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	100800131	rs4727481	T	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	100802316	rs6954408	C	T	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	100802786	rs11983381	A	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	100803689	rs35208462	C	T	11368.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr7	100816527	rs2009973	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	100818193	rs2015923	G	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	100839401	rs3735338	G	A	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	100841389	rs2158612	A	C	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	100841863	rs3735337	T	A	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	100849804	rs4729670	G	A	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	100853173	rs1468358	T	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr7	100860401	rs28361887	C	T	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	100860636	rs1056678	T	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.02;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	100861213	rs17319250	T	C	8771.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr7	100861452	rs11769624	T	C	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	100865847	rs10953329	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	100875772	rs1047319	T	G	5564.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr7	100877456	rs2302428	T	C	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	100965096	rs11369267	A	AG	3450.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr7	101006216	rs4989271	G	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.98;QD=43.27;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	101006223	rs4989270	C	T	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.98;QD=44.29;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	101006230	rs4989269	T	G	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.05;QD=44.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	101006233	rs4989268	C	T	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=43.39;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	101006376	rs4989267	C	T	7470.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	101006382	rs4989266	C	T	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	101006488	rs4989265	C	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	101063403	rs11767330	G	T	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	101063487	rs11767356	G	A	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	101091166	rs62463425	T	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	101176505	rs1476655	G	A	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	101183108	rs6465817	T	C	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	101188852	rs9886175	T	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	101192542	rs57977430	G	A	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	101194424	rs17135626	C	T	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	101194461	rs73715304	C	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	101196488	rs12674244	T	C	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	101196688	rs13235234	C	T	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	101196756	rs3800980	A	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	101199257	rs4729728	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	101200595	rs17393028	A	G	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	101200669	rs36008849	A	AG	7959.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	101200765	rs17471501	C	T	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	101200835	rs7809926	A	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	101256833	rs2240389	T	C	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	101257075	rs2240390	T	C	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	101265350	rs4263675	T	C	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	101266379	rs7794055	T	C	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr7	101267315	.	AAAT	A	38	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=38;QD=25.5;SC=TCAAACAAACAAATAATAATA;SbPval=1.0;Source=Platypus;TC=14;TCF=2;TCR=12;TR=2;WE=101267325;WS=101267305;set=Platypus	GT:AD:AF:DP	0/1:12,2:0.14:14
chr7	101267435	rs876825	T	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	101272465	rs848644	T	C	179.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	101459161	rs28650922	T	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	101671585	rs448877	A	G	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	101713590	rs377612	T	C	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	101740606	rs1637257	T	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.21;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	101740610	rs1734879	C	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.90;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	101740827	rs10638510	T	TTC	2126.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.53;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	101747575	rs201480	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	101747593	.	G	GT	765.73	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:3,40:0.93:43
chr7	101754865	rs201493	T	C	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	101755060	rs9655774	A	G	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	101758584	rs201501	G	A	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.04;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	101837149	rs11540899	G	A	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	101843536	rs34285499	A	AT	1392.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:5,70:0.93:75
chr7	101844851	rs60987662	A	G	20977.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=827;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.55;ReadPosRankSum=0.073;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:2,819:1.00:821
chr7	101870599	rs430841	A	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	101882503	rs62484935	T	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	101916647	rs813000	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.441;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	101917521	rs803064	G	A	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr7	101917647	rs712839	A	G	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	101917772	rs712840	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	101923315	rs57030737	T	TC	12471.73	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=34.17;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr7	101925065	rs803069	G	T	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	101925338	rs2257738	A	G	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	101926087	rs73712454	G	T	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	101926228	rs803070	T	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	101928495	rs803074	G	C	10066.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr7	101928585	rs803075	G	A	13552.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr7	101953534	rs809120	T	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	101954412	rs4729780	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	102036396	rs28366045	AC	A	3183.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	102036769	rs56992893	CGGAGACTGCGTATGCG	C	271.76	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	102038153	.	CTGTGTG	C,CTG	6438.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=249;set=Intersection	GT:AF:DP	1/2:0.20,0.79:158
chr7	102046070	rs6971258	T	A	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	102046359	rs6955864	G	C	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	102047970	rs191367889	C	T	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr7	102063363	rs143532608	GGAAACATCC	G	1763.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	102063527	rs7384395	G	C	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	102063567	.	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.852;QD=0.69;ReadPosRankSum=1.169;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:86,23:0.21:109
chr7	102065322	rs1983476	A	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	102086891	rs12672132	C	T	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	102105984	rs10953368	T	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	102106857	rs140459331	CTTTA	C	390.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	102107697	rs11761361	G	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	102111936	rs60871950	G	A	4040.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.143;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.41;ReadPosRankSum=-0.976;SOR=0.281;set=HC	GT:AD:AF:DP	1/1:1,152:0.99:153
chr7	102112980	rs3800987	G	A	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr7	102113093	rs3800988	T	C	18155.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,710:1.00:710
chr7	102113563	rs61229695	TG	T	6247.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=29.20;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	102120821	rs11767570	T	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	102136550	rs77782294	G	A	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.42;QD=26.18;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	102147148	.	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.34;MQRankSum=-0.842;QD=8.80;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr7	102235692	.	G	GCT	901.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.44;QD=42.94;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	102235910	.	G	C	314.77	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.77;QD=28.62;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	102246447	rs200418348	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-4.654;QD=1.60;ReadPosRankSum=1.408;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr7	102246500	rs144574884	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.12;MQRankSum=3.040;QD=3.64;ReadPosRankSum=1.294;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr7	102319079	rs368279784	G	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.51;MQRankSum=-0.257;QD=4.20;ReadPosRankSum=-1.985;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr7	102343967	rs4729850	A	G	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	102389833	rs28695887	G	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.82;QD=25.17;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	102398410	rs199537059	C	CT	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=51.44;MQRankSum=-3.675;QD=11.25;ReadPosRankSum=0.982;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:13,34:0.72:47
chr7	102412901	rs2539288	T	C	3174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.403;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=-17.925;QD=7.98;ReadPosRankSum=1.652;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:221,177:0.44:398
chr7	102572401	rs142681662	G	A	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	102574999	rs3832497	TGAA	T	8357.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.46;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr7	102616469	rs2228687	G	A	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr7	102668001	rs7805950	A	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	102722505	rs4729868	G	A	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	102722516	rs4729869	T	C	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	102724372	rs4729871	A	T	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	102739043	rs4729879	C	T	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.00;QD=25.34;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	102755330	rs4729882	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	102760722	rs1974715	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	102825871	rs4317507	T	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	102874366	rs3987883	C	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	102948040	rs11489600	T	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	102961209	rs72437079	CAT	C	101.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	102961277	.	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.629;QD=3.16;ReadPosRankSum=-0.000;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	103007949	rs4520097	A	C	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	103018016	rs10273883	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	103019613	rs12705120	A	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	103033573	rs13240456	T	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	103061949	.	C	G	4284.77	.	AC=2;AF=1.00;AN=2;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	103118723	rs11340961	AT	A	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.124;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr7	103132303	.	T	TCA	128.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr7	103138517	rs2711885	C	G	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	103162370	rs10282605	C	T	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	103175965	rs362706	C	T	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	103191428	rs362721	C	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.65;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	103206001	rs35268159	G	GA	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.361;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr7	103270629	.	G	GA	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.688;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr7	103417134	rs262338	G	T	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.92;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	103417139	rs13243284	A	C	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	103417557	rs11496125	C	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	103557421	.	A	G	1719.77	.	AC=2;AF=1.00;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr7	103557697	rs711443	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	103629803	.	T	TGCCGCC,TGCC	4308.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=159;set=Intersection	GT:AF:DP	1/1:0.99:98
chr7	103824722	rs34556202	C	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	103824724	rs11384924	T	TA	433.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	103835732	rs2307400	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	103838120	rs13238183	A	C	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	103844557	rs2245659	T	G	93.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	103969194	.	CAGG	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.419;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:89,10:0.10:99
chr7	104110392	rs4727601	C	T	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	104263404	rs1113933	A	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	104263425	rs1073012	T	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	104681214	rs10264273	G	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	104681497	rs66645072	C	CA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=1.423;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr7	104704314	rs7805792	G	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	104707158	.	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.182;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr7	104707360	rs12705297	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	104717319	rs376781993	TTG	T	134.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.000;QD=13.47;ReadPosRankSum=0.253;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr7	104717517	rs2240455	C	T	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	104742054	rs11976329	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	104745818	rs2299298	G	A	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	104746522	rs11340728	AT	A	452.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	104748407	rs11399039	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=1.277;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr7	104748472	rs66673047	AATTTAGTT	A	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	104751419	rs2299299	C	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	104845964	.	TCACACACACACA	T,TCA	1385.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=43.30;SOR=1.230;set=HC	GT:AD:AF:DP	1/2:0,23,9:0.72,0.28:32
chr7	104845976	.	A	T	93.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.820;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr7	104845978	.	A	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.480;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr7	105112388	.	T	C	52	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=2;HapScore=2;MGOF=49;MMLQ=24;MQ=60.0;NF=1;NR=2;PP=52;QD=28.9237375157;SC=TAAAATAGGATATAAATTATA;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3;WE=105112396;WS=105112378;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	105112489	rs818477	C	A	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.06;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	105122891	rs57080279	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.561;QD=1.87;ReadPosRankSum=-0.176;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	105146593	rs11421080	A	AT	2251.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=26.49;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	105250824	rs10216257	G	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	105250904	rs10215543	AG	GA	6361.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	105254085	rs57819574	T	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	105516072	rs62482807	T	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.60;QD=20.92;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	105516082	.	C	CCA	733.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.45;QD=36.69;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	105615406	rs35008315	G	A	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	105615426	rs34426483	G	C	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	105621512	rs193795	G	T	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	105658451	rs6967330	G	A	4893.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.785;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.033;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.10;ReadPosRankSum=1.515;SOR=0.256;set=HC	GT:AD:AF:DP	1/1:1,194:0.99:195
chr7	105662690	rs10258293	T	C	10688.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:1,426:1.00:427
chr7	105672826	rs75850640	T	G	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	105733037	rs4434555	T	C	129.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.80;QD=21.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	105733619	rs176486	G	A	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	105738368	rs12705333	T	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	105894971	rs140919946	A	C	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.37;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	105903904	rs2302559	T	C	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.97;QD=26.00;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	105904150	rs4730153	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	105909828	.	CT	C	36.15	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.000;QD=5.16;ReadPosRankSum=-1.309;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	106508978	rs849389	A	G	13143.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr7	106508987	rs849390	T	C	12863.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr7	106510076	rs1526083	A	G	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	106519943	rs849370	T	C	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	106685448	rs75385144	G	T	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	106768839	rs34736852	G	GAC	2521.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	106781445	rs2302453	G	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.13;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	106786952	rs3729876	T	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	106799997	rs257376	G	A	10243.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr7	106836195	.	CT	C,CTT	69	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.4712,0.5288;HP=18;HapScore=3;MGOF=44;MMLQ=22;MQ=60.0;NF=4,4;NR=1,1;PP=6,69;QD=2.0;SC=CAGATGTTTTCTTTTTTTTTT;SbPval=0.86;Source=Platypus;TC=6;TCF=4;TCR=2;TR=5,5;WE=106836203;WS=106836185;set=Platypus	GT:AF:DP	0/1:0.83:6
chr7	106836242	rs3801964	T	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	106898870	rs373558918	TTC	T	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=1.79;ReadPosRankSum=2.017;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:73,17:0.19:90
chr7	106965009	rs62482495	A	G	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	106965039	rs6466164	C	T	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	107002806	rs2269970	A	G	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	107052927	rs10579767	AAC	A	4491.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	107114400	rs11453718	A	AT	231.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	107167661	rs201626701	T	TA,TAA	1289.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.641;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.57;MQRankSum=0.504;QD=14.82;ReadPosRankSum=0.241;SOR=1.675;set=HC	GT:AD:AF:DP	1/2:15,46,26:0.53,0.30:87
chr7	107188719	rs2066735	G	T	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	107194911	rs2520270	C	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	107198405	rs2520272	A	T	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	107340372	rs35161285	CAAA	C	263.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.98;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	107344921	.	CT	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-2.393;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:88,33:0.27:121
chr7	107384849	rs756872	C	T	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	107392891	rs10594774	CTG	C	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.817;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:89,18:0.17:107
chr7	107414419	rs41669	A	G	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	107418805	.	C	CTTTTTT	376.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;QD=34.25;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	107420354	rs10247487	C	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	107423254	rs3735605	C	T	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	107431712	rs41280242	T	C	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr7	107431776	rs41280239	G	C	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	107531832	rs11373214	G	GC	1626.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	107545586	rs17412104	G	A	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	107545799	rs10263341	T	C	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	107546937	rs10281520	A	G	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	107564366	rs7561	T	G	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	107564539	rs3213673	G	A	2013.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.95;ReadPosRankSum=1.661;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr7	107564542	rs3213674	G	T	2013.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.577;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.911;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.95;ReadPosRankSum=2.246;SOR=0.197;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr7	107580839	rs2158836	A	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	107593989	rs20556	T	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	107613379	rs2701034	G	A	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	107738801	.	A	ACATAGGGGTTGATGGACGCCCCCTCCCCGCCCTCCCACTATGGACTTACGCTGGCAGCC	3055.73	.	AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.05;QD=59.92;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	107738836	rs6974722	T	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=28.45;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	107738882	rs1735499	G	A	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	107738948	rs451252	G	A	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	107743409	rs401487	A	G	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	107743664	rs402113	A	G	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	107746214	rs430628	TG	GC	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	107746246	rs370495	T	C	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=1.795;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	107746253	rs420753	A	G	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.63;SOR=1.557;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	107747928	rs446800	A	C	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	107747937	rs401066	G	A	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	107748337	rs402264	G	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	107752470	rs369505	A	T	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	107752477	rs369508	A	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	107791018	rs443552	G	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	107800953	rs12670313	A	G	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	107808639	rs12537654	A	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	107815858	rs11983886	T	A	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	107818851	rs428459	T	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	107820911	rs414077	G	T	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	107822198	rs2839850	A	G	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	107822396	rs2142325	G	A	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	107824556	rs10561815	TTA	T	120.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	107824678	rs6970656	A	G	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	107824889	rs401433	C	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	107825108	rs427909	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	107831520	rs6962066	T	C	63.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	107834613	rs6958498	G	C	6604.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr7	107834624	rs6978315	T	C	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr7	107834734	rs404287	C	T	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	107836064	rs34680676	G	GAA,GA	243.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=11;set=Intersection	GT:AF:DP	1/1:1.00:10
chr7	107836117	rs35825013	GT	G	863.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	107838464	rs381318	G	T	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	107838637	rs388557	C	A	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	107849908	rs1269621	G	A	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	107874906	rs1269632	G	A	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	107875170	rs1269633	T	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	108212353	rs1043615	G	A	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	108213926	rs3763457	A	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	108524444	rs11397223	C	CA	865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.068;QD=7.80;ReadPosRankSum=-2.034;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:39,72:0.65:111
chr7	111372095	rs10953696	T	C	186.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.75;ReadPosRankSum=-0.812;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	111376840	rs2301678	T	C	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	111379634	rs10246451	C	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	111379706	rs2074116	A	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	111382324	rs3757648	C	T	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	111462314	rs113026478	C	CA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.279;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.803;QD=1.49;ReadPosRankSum=0.398;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr7	111624522	rs2074127	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	111629025	rs17401943	T	A	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	111926896	.	C	CTTTTTTTT	216.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;MQRankSum=0.319;QD=54.13;ReadPosRankSum=-1.150;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr7	112098889	rs199822727	G	A	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	112101909	rs2708609	T	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	112102355	rs2253962	T	G	4267.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.165;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.81;ReadPosRankSum=0.896;SOR=0.355;set=HC	GT:AD:AF:DP	1/1:1,171:0.99:172
chr7	112112279	rs2074796	G	A	7136.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	112130009	rs11767398	A	C	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	112575149	rs10231221	A	C	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	112724417	rs2256044	A	G	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	112724525	rs1608890	A	G	7263.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	113518502	rs2974938	A	T	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	113519387	.	G	T	7786.77	.	AC=2;AF=1.00;AN=2;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	113519719	rs2974944	A	T	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	113519796	rs2974942	C	T	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	114138751	rs2040658	G	C	100.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	114178279	rs78027924	T	A	159.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	114270077	rs10227893	T	G	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	114293360	.	A	AT	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.481;QD=3.76;ReadPosRankSum=3.786;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:65,32:0.33:97
chr7	114293859	rs11765385	G	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	114303617	rs35518337	CT	C	542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.513;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.650;QD=9.36;ReadPosRankSum=1.204;SOR=1.555;set=HC	GT:AD:AF:DP	0/1:11,47:0.81:58
chr7	114619598	rs2594449	C	A	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	115608355	rs10248479	T	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	115850937	rs1866961	T	C	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	115874560	rs2030978	C	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	115874817	rs3030639	TAA	T	686.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	115892295	rs17138466	C	A	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	115892650	rs1048508	T	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	115897222	rs2402058	A	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	115897242	rs2402059	T	G	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	115897392	rs4710	G	C	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	116140076	rs2535220	T	C	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	116140275	rs11767363	T	C	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	116140524	rs2270188	G	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr7	116145957	rs4730743	A	T	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	116165360	rs1997623	A	C	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	116165463	rs2742125	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	116166858	rs138907327	GCA	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.775;QD=0.55;ReadPosRankSum=-0.260;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:75,10:0.12:85
chr7	116364823	rs34822187	CA	C	1539.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	116409675	rs72220100	CT	C	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=0.538;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr7	116435768	rs41736	C	T	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	116436022	rs2023748	G	A	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr7	116436097	rs41737	G	A	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	116550456	rs2074025	C	T	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	116596697	rs6960131	A	G	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	116598735	rs6466595	A	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	116600049	rs10262671	A	T	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	116607501	rs10259502	T	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	116660464	rs5886844	AC	A	2150.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	116778443	.	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=3.148;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr7	116838311	rs193573	G	A	7449.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr7	116918060	rs6972479	G	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	117149147	rs1800076	G	A	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	117188660	.	ATG	A	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=0.684;QD=1.71;ReadPosRankSum=-0.999;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr7	117188736	rs4727853	C	A	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.26;MQRankSum=-5.477;QD=10.74;ReadPosRankSum=-0.481;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:52,27:0.34:79
chr7	117188750	rs201880593	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=51.32;MQRankSum=-4.445;QD=3.29;ReadPosRankSum=2.694;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:59,22:0.27:81
chr7	117188797	rs201434579	A	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.32;MQRankSum=-4.445;QD=3.37;ReadPosRankSum=0.165;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:59,22:0.27:81
chr7	117450792	rs2111204	A	C	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	117451124	rs6973399	T	C	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	117824239	rs2896242	G	C	11396.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,450:1.00:450
chr7	117825549	rs9655829	T	G	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	117825681	rs45604739	A	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	117825834	rs2041527	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	117832138	rs1061731	G	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.13;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	117867960	rs60066163	C	CT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.452;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr7	117876264	.	A	ATGTG	172.87	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	120428607	rs41622	G	A	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	120428799	rs41623	C	A	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	120450658	rs7805733	G	A	3310.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.324;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=9.676;MLEAC=2;MLEAF=1.000;MQ=61.19;MQRankSum=-2.980;QD=22.68;ReadPosRankSum=0.569;SOR=0.296;set=HC	GT:AD:AF:DP	1/1:3,143:0.98:146
chr7	120450678	.	T	TCACA,TCACACA	2751.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.65;QD=41.69;SOR=1.574;set=HC	GT:AD:AF:DP	1/2:0,19,47:0.29,0.71:66
chr7	120590786	rs11408222	C	CG	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	120591120	rs188626385	C	T	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	120613419	rs2721369	A	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.07;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	120655676	rs4730984	G	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	120704289	rs2721375	C	T	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	120739962	rs199844199	GTT	G,GT	2159.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.742;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.361;QD=18.78;ReadPosRankSum=1.464;SOR=1.518;set=HC	GT:AD:AF:DP	1/2:5,83,27:0.72,0.23:115
chr7	120740103	rs798937	G	T	8778.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:1,343:1.00:344
chr7	120740225	rs1917112	C	G	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	120764477	rs1524498	G	C	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	120764573	rs798948	C	A	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	120765954	rs798949	T	C	7636.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,303:1.00:304
chr7	120773954	rs61128227	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	120776097	rs41281692	C	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	121080940	rs112061279	C	T	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	121081115	rs6466786	A	C	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	121160956	rs73225231	T	C	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	121164363	rs2896305	C	G	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	121513382	.	TCA	T	25	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.4998;HP=2;HapScore=2;MGOF=11;MMLQ=27;MQ=58.62;NF=0;NR=2;PP=25;QD=15.0;SC=TCTCTCTCTCTCACACACACA;SbPval=1.0;Source=Platypus;TC=8;TCF=3;TCR=5;TR=2;WE=121513391;WS=121513372;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr7	121616250	rs4629793	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	121699789	rs55805372	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.354;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:108,21:0.16:129
chr7	121738926	.	TA	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=5.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=1.962;SOR=2.356;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr7	121942832	rs10685687	G	GACA	7568.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.30;SOR=1.172;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	121942847	rs6968786	G	C	9458.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=38.14;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr7	121943642	rs111662975	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	121944527	rs11761299	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	121985541	rs798685	T	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	121985556	rs798684	C	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.15;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	122026263	rs73216113	T	A	63.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	122033379	rs2074588	A	G	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	122078414	rs2074589	T	G	8509.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:2,341:0.99:343
chr7	122091566	rs3764810	C	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	122131535	rs1476589	G	A	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	122303321	rs2251761	C	T	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	122635024	rs860170	C	T	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	122769378	.	C	CTG	1407.73	.	AC=1;AF=0.500;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	0/1:61,74:0.55:135
chr7	122809111	rs1880178	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	123142588	rs11770523	A	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	123150236	rs4276609	C	T	190.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	123256427	rs6962756	C	T	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	123324546	rs5887151	AAT	A	93.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr7	123329060	rs67743898	GTC	G	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=0.150;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr7	123610348	rs11975640	C	T	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	124387374	rs724356	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	124465509	rs10250202	A	C	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	124469267	rs10263573	A	T	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	124475296	rs142780416	TAAACA	T	1521.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	124477182	rs7787804	A	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	124481245	rs3815221	G	A	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	124486980	rs7794637	T	C	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	125588508	rs28572773	A	C	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	125588526	.	G	GAAGA	53.70	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	125753485	rs1419526	C	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	125753551	rs1419527	A	G	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	125753556	rs5887285	A	AG	3510.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	125753603	rs1419528	A	G	2689.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=6.932;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.35;ReadPosRankSum=0.020;SOR=0.515;set=HC	GT:AD:AF:DP	1/1:2,124:0.98:126
chr7	125753636	rs1419529	A	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	125753737	rs4395830	A	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	126079144	rs712723	A	G	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	126174071	.	G	GT	21	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5208;HP=8;HapScore=2;MGOF=16;MMLQ=23;MQ=62.13;NF=0;NR=2;PP=21;QD=19.0;SC=TAAGAGTCTCGTTTTTTTTCC;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=126174079;WS=126174061;set=Platypus	GT:AD:AF:DP	0/1:1,2:0.67:3
chr7	126716306	rs1419447	G	A	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	127017391	rs17862368	A	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	127222252	.	C	T	8765.77	.	AC=2;AF=1.00;AN=2;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr7	127224193	rs3735643	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	127236338	rs3735640	C	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	127250907	rs712700	T	C	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	127251188	rs712701	T	G	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	127251732	rs35434068	T	TA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.340;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.455;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:79,19:0.19:98
chr7	127252988	rs376039555	AGGAT	A	746.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	127253714	rs3835004	A	AG	712.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	127254457	rs594141	G	A	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	127255285	rs698406	C	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	127255795	rs327516	C	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	127347820	rs60701262	A	AGT	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.385;QD=11.27;ReadPosRankSum=-1.732;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	127447499	rs325440	A	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	127669857	rs3823994	A	T	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	127714491	rs225241	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	127721507	rs322825	T	C	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr7	127950725	rs12850	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	127957602	rs2290225	A	C	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	127975629	.	C	T	3082.77	.	AC=2;AF=1.00;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	128095876	rs2732393	A	G	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	128119379	rs2896399	TG	CC	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.383;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=78.699;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-15.432;QD=1.65;ReadPosRankSum=-5.286;SOR=6.730;set=HC	GT:AD:AF:DP	0/1:257,30:0.10:287
chr7	128119514	rs1065267	G	A	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:282,149:0.35:431
chr7	128133984	rs2562741	G	A	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	128137993	rs10245559	T	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	128140982	rs10257897	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.73;QD=25.22;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	128141083	rs10271878	A	G	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	128141136	rs3802007	T	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	128141865	rs1053124	T	C	6552.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.67;QD=26.21;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr7	128142023	rs12539729	A	T	6201.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=0.000;QD=24.32;ReadPosRankSum=-0.610;SOR=0.687;set=HC	GT:AD:AF:DP	1/1:3,252:0.99:255
chr7	128142033	rs35586323	T	C	11416.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	128219018	rs199746388	AAAAAC	A	300.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.10;QD=37.59;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	128298666	.	C	G	4276.77	.	AC=2;AF=1.00;AN=2;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	128315588	rs13308199	T	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	128388541	rs12538139	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	128394606	rs2307040	C	T	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	128399231	rs41274152	T	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	128409225	rs1043550	A	G	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	128414484	rs17397588	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.65;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	128415195	rs1799922	T	G	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	128415290	rs17476081	C	T	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	128415860	rs3807128	C	T	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	128434900	rs3736279	T	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.282;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	128450532	rs7799186	G	A	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	128451353	rs111409895	C	CAGAGAGCCTGGGA	2375.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=46.58;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	128455767	rs4728137	C	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	128487866	rs2249128	T	C	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	128531072	rs3734971	T	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	128532551	rs78082728	A	G	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	128532980	rs7782976	T	C	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr7	128533514	rs34061445	T	TC	3404.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	128542982	rs11975930	G	A	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	128543678	rs6955736	C	T	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	128544133	rs56144153	G	T	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	128547512	rs6948542	G	A	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	128548463	rs7786945	A	C	20812.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,820:1.00:820
chr7	128550577	rs75709678	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	128550680	rs11335250	GC	G	2972.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=31.62;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	128550894	rs1609545	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	128610484	rs1691779	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	128629993	rs41274158	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	128694976	rs2242028	C	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	128766505	rs6952057	A	C	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.70;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	128766528	rs10464697	G	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.64;QD=42.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	128766533	rs10464698	A	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.64;QD=42.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	128766553	rs6952077	A	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.70;QD=25.93;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	128767410	rs10247566	A	G	14431.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.42;QD=25.68;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,562:1.00:562
chr7	128767490	rs7809681	T	C	9035.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr7	128767506	rs7809687	T	G	8592.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr7	128784723	rs13309419	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	128785008	rs13243618	C	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	128802936	rs919551	T	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	128804218	rs2566892	G	A	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	128845018	rs2703091	C	T	9187.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr7	128845277	rs2075777	G	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	128845325	rs2566872	G	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	128845907	rs2075779	T	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	128846328	rs2228617	G	C	9109.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr7	128846469	rs2735842	A	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	129029093	rs10954231	A	G	388.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.44;ReadPosRankSum=-0.999;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr7	129040018	rs17552411	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	129049507	rs6467244	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	129094195	rs581829	T	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	129102743	rs34275118	A	G	6304.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	129125296	rs200708461	C	CA	95	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.56;ReadPosRankSum=-0.589;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr7	129125750	rs692625	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	129142694	rs691332	C	G	8022.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr7	129142775	rs610591	G	A	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	129349101	rs11769146	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	129350170	rs3736626	A	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	129351444	rs1962038	C	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	129356939	rs12154342	T	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	129410144	rs4467881	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	129410195	rs4541843	G	A	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	129658655	rs2242488	A	G	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	129663496	rs11556924	C	T	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	129664312	rs1464890	T	C	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	129680994	rs34409527	A	ATG	391.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr7	129736880	rs12531444	G	A	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	129806441	rs4507710	C	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	129825215	rs4731668	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	129841939	rs11375003	G	GA	940.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	129847482	rs2727837	C	T	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	129853233	rs13224721	T	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	129853251	rs6969994	T	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.59;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	129853461	rs118135439	G	C	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	129855837	rs4728190	C	T	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	129938598	rs34587586	G	T	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	129962360	rs1569133	A	G	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	129986226	rs6955991	T	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	129986236	rs6955995	T	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.91;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	129986338	rs6973851	C	T	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	129986521	rs6467306	T	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	129989878	rs7808823	T	C	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	130002317	rs1544705	T	C	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr7	130007901	rs2241272	A	T	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	130007913	rs2241273	T	G	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	130008159	rs2302823	A	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	130020569	rs7790688	A	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.63;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	130021488	rs1126899	G	C	11951.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr7	130023179	rs6972781	A	G	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	130023561	rs34474469	G	A	22575.77	.	AC=2;AF=1.00;AN=2;DB;DP=888;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.83;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,874:1.00:874
chr7	130023657	rs34925618	TG	T	16913.73	.	AC=2;AF=1.00;AN=2;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=31.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,529:1.00:529
chr7	130024308	rs3043750	A	ACC	1455.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	130025895	rs2239606	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	130027633	rs10263705	A	G	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	130138155	rs6968284	A	G	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	130147427	.	G	GT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.613;QD=2.24;ReadPosRankSum=1.891;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr7	130148562	rs58927323	T	TTCTTAGGAAGTG	575.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	130148817	rs1047456	G	A	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	130288598	.	CA	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.130;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:56,37:0.40:93
chr7	130293022	rs6970543	C	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	130295525	rs7800717	T	C	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	130297119	rs34699820	GA	G	2404.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.856;MLEAC=2;MLEAF=1.000;MQ=60.19;MQRankSum=0.374;QD=17.43;ReadPosRankSum=0.415;SOR=0.373;set=HC	GT:AD:AF:DP	1/1:5,133:0.96:138
chr7	130298550	rs4731696	C	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	130354106	rs10232683	G	C	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	130356691	rs10628843	C	CTTTAT	144.94	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	130357518	rs2288080	C	T	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	130418689	rs111400400	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	130418720	rs111359117	A	C	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.96;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	130418721	rs184537657	T	G	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	130418744	rs111731678	T	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	130418883	.	C	CGAGCGCCGTCCGAACGCGGCCGGCCGCGGGCGACGGAGTTCCCGGGAGCGTCCGTCCCGCAGCCTCG	514.77	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=57.20;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	131163354	rs10701186	C	CTT	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.000;QD=8.47;ReadPosRankSum=0.190;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:17,36:0.68:53
chr7	131190554	rs7799613	C	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	131190696	rs6651125	T	C	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	131191536	rs3212303	A	G	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	131191554	rs56231781	TC	T	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	131191609	rs11770771	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	131193863	rs56123664	G	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	131193885	rs56165616	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	131194392	rs3212295	G	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	131196062	rs17744792	C	T	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	131196206	rs73157523	T	C	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	131832627	rs1450882	A	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	131849204	rs896167	T	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	131883311	rs62622406	C	T	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	131913288	rs62464985	G	A	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	131915507	rs1868781	A	G	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	132070054	rs741664	T	C	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	132192231	rs156960	A	G	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	132192295	rs156961	G	A	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	132192949	rs156962	T	C	7241.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr7	132409606	rs594208	T	C	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	132570358	rs12707059	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	132706981	rs17421819	G	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	132709293	rs13235276	C	T	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	133868368	rs1222420	C	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	133868507	rs1222419	C	T	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	133881919	rs10611703	ATG	A	423.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=30.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	133886356	rs369598961	AT	A	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.600;QD=1.40;ReadPosRankSum=-0.450;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:80,27:0.25:107
chr7	133933671	rs34245697	G	GT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=2.539;QD=1.21;ReadPosRankSum=1.775;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr7	133979545	rs2504	A	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	133979552	rs2505	C	T	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	133979578	rs2241336	A	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	133979795	rs1421484	T	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	133980999	rs1862050	T	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	133981021	rs1862051	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	133981227	rs1862052	G	A	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	133984127	rs2075371	A	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	133984432	rs2075372	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	133984878	rs34664116	G	A	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	133989543	rs447266	A	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	133989816	rs2544217	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	134133291	rs2734653	G	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	134134338	rs71531826	CA	C	778.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:4,49:0.92:53
chr7	134135751	rs2734649	C	T	9554.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr7	134136584	rs1732035	A	C	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	134552634	rs1452911	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	134576441	rs6953822	T	C	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.55;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	134576547	rs12531510	A	G	121.81	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	134605284	rs117010660	G	A	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	134612759	rs11438725	G	GT	1599.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.76;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	134617884	rs140355865	G	A	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	134618710	rs6973420	A	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	134694773	rs34139471	CT	C	395.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-0.721;QD=10.41;ReadPosRankSum=-0.095;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:7,31:0.82:38
chr7	134694939	rs6958457	T	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	134701856	rs4236655	G	C	8230.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr7	134719551	rs9656447	C	G	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	134730151	rs2348054	G	C	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	134730441	rs2348055	A	G	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	134849280	rs292501	T	A	8280.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr7	134852432	rs292505	C	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	134871775	rs292557	C	T	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	134872003	rs292558	C	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	134873355	rs292564	G	A	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	134877935	rs292573	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	134879830	rs292575	G	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	134880884	rs292578	G	C	7843.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.939;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr7	134882592	rs292581	C	T	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	134882680	rs292582	A	G	4052.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.802;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.98;ReadPosRankSum=-0.629;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:1,155:0.99:156
chr7	134882693	rs292583	T	C	4924.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	134889141	rs292592	G	A	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	134890855	rs292593	T	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	134895532	rs292601	T	C	8647.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr7	134896383	rs292602	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	134925241	rs34330846	C	CA	2914.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=1.604;SOR=0.620;set=HC	GT:AD:AF:DP	1/1:20,154:0.89:174
chr7	134925411	rs7805859	G	A	8656.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr7	134928033	rs62481958	G	T	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	134930169	rs113633449	A	AGAG	2498.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.710;MLEAC=2;MLEAF=1.000;MQ=61.44;MQRankSum=1.251;QD=22.92;ReadPosRankSum=0.421;SOR=1.229;set=HC	GT:AD:AF:DP	1/1:7,102:0.94:109
chr7	134939767	rs17168332	G	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	134943057	rs11979450	C	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	134943087	rs11979453	C	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	134943116	rs11979480	C	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	134943328	rs58802664	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	134962043	rs10239950	C	G	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	135047703	rs6969632	T	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	135048804	rs3812265	C	T	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	135083052	rs376120582	G	GA	101.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	135095270	rs2696877	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	135242910	rs6961420	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	135262533	rs10252250	T	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	135279315	rs7800214	A	C	4633.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	135282698	rs79816318	A	G	175.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	135285788	rs4296989	T	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	135304273	rs7810767	G	C	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	135311120	rs7810260	G	A	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	135311167	rs10234309	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	135344722	rs76188788	A	C	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	135347239	.	GC	G	2676.73	.	AC=2;AF=1.00;AN=2;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=30.08;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	136588109	rs6963819	G	A	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	136921062	rs322295	C	T	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	136939582	rs1162122	G	T	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	137097086	rs1731959	G	C	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	137154572	rs2293546	T	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	137304765	.	G	GCA	50.25	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	137531147	rs71815938	GT	G	12351.73	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=38.72;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr7	137531697	rs117303154	C	A	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	137590369	rs273968	G	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	137600690	rs273957	C	T	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	137607184	.	GT	AC	316	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=4;MGOF=41;MMLQ=26;MQ=54.16;NF=6;NR=1;PP=316;QD=52.7811249803;SC=ATATATATACGTATATATATA;SbPval=0.6;Source=Platypus;TC=8;TCF=7;TCR=1;TR=7;WE=137607213;WS=137607182;set=Platypus	GT:AD:AF:DP	1/1:1,7:0.88:8
chr7	137612913	rs66593747	CTGG	C	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	137641123	rs274003	C	T	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	137642759	rs274004	T	A	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	137773291	rs2120846	T	G	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	137773563	rs2166188	T	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	137773587	rs35802315	C	CGTGT	841.74	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:2,25:0.93:27
chr7	137776411	rs202194493	C	CA	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=0.167;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr7	137789937	rs2306845	G	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	137798593	rs2306847	A	T	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	137801413	rs1872929	A	C	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	137801444	rs1872930	C	T	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	138189201	.	T	G	94.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.836;QD=2.56;ReadPosRankSum=0.988;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr7	138189202	.	T	G	66.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.096;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.302;QD=1.80;ReadPosRankSum=0.032;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr7	138200117	rs3757381	A	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	138229990	rs6959574	G	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	138312122	rs2305816	A	C	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	138333933	rs58569190	GA	G	964.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr7	138356659	rs5887893	AG	A	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.52;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	138356662	rs5011821	G	A	773.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	138356663	rs5011820	G	C	773.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	138356664	rs5887894	C	CA	764.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.49;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	138356730	rs202122915	T	TG	2426.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.53;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	138356733	rs5887896	TG	T	2475.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	138391596	rs12707394	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	138394695	rs141195167	G	GCAAT	321.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	138417596	rs148944306	T	TA	234.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=1.089;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr7	138417718	rs3807154	A	G	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	138418910	rs1026435	G	A	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:2,260:0.99:262
chr7	138419085	rs1037692	A	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	138429823	rs55843107	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	138453892	rs374123555	GAA	G	935.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.258;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.10;ReadPosRankSum=-0.271;SOR=0.604;set=HC	GT:AD:AF:DP	1/1:8,41:0.84:49
chr7	138455988	rs10258719	A	G	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	138485954	rs6945259	G	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	138486096	rs61729750	G	C	11198.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr7	138583840	rs7802841	C	A	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	138588538	.	AGTGTGTGTGTGTGT	A	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=-0.000;DP=60;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=-3.067;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	138853315	.	C	CA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.363;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chr7	139026152	rs10265	T	G	5318.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	139077240	rs4732370	C	A	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	139077317	rs4732371	T	A	680.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	139097282	rs11409457	A	AC	564.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-0.098;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr7	139097283	rs200596529	T	C	82.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.049;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr7	139102490	rs3778931	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	139138551	rs10954649	C	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	139138871	rs11763327	T	G	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	139167934	rs1860150	T	G	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	139257638	.	TCTCC	T	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.216;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr7	139257663	rs370405485	C	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	139605869	rs35857550	CT	C	708.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=1.862;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr7	139653196	rs5768	A	C	5402.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	139724169	rs13760	A	G	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	139724358	rs2269996	G	A	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	139724555	rs3735352	C	T	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	139726207	rs2286198	G	A	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	139727135	rs2286196	G	A	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	139728584	rs2286195	A	C	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	139746633	.	T	TGTGTGTGTCA,TGTGTGTGTGTGTCA	621	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=42;MMLQ=28;MQ=60.56;NF=5,5;NR=35,35;PP=106,621;QD=2.725;SC=TGTGTGTGTGTCACACACAGA;SbPval=0.9;Source=Platypus;TC=44;TCF=9;TCR=35;TR=40,40;WE=139746641;WS=139746623;set=Platypus	GT:AF:DP	0/1:0.91:44
chr7	139754451	rs2362460	T	C	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	140037053	rs11331602	CT	C	401.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr7	140048262	rs66700092	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.16;ReadPosRankSum=-1.117;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	140051063	rs12703774	C	T	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	140051091	rs12703775	G	A	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	140051848	rs12665885	C	T	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	140055425	rs143846511	CAG	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-1.844;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr7	140069361	rs4448174	G	C	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	140080087	rs62490396	C	G	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	140082363	rs6968618	G	A	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	140107680	.	CTT	C	101.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.493;QD=10.12;ReadPosRankSum=-2.287;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr7	140173010	rs58539466	C	CA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=2.292;QD=2.26;ReadPosRankSum=-1.677;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr7	140218464	rs6852	C	A	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	140255657	rs11763409	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	140257841	rs10252031	A	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	140267088	rs199826292	GAGAGAGAA	G	451.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.135;MLEAC=2;MLEAF=1.000;MQ=62.45;MQRankSum=1.457;QD=23.79;ReadPosRankSum=-2.448;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr7	140268716	rs149969470	G	A	1351.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.532;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.58;ReadPosRankSum=-0.726;SOR=0.287;set=HC	GT:AD:AF:DP	1/1:1,54:0.98:55
chr7	140269625	rs587373	C	T	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	140301731	rs269243	G	T	13820.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr7	140373254	rs140971515	C	T	6869.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr7	140395554	rs373239942	CT	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.722;QD=0.94;ReadPosRankSum=-0.750;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:107,36:0.25:143
chr7	140396472	rs57717083	C	CG	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr7	140397792	rs1267673	T	C	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	140434597	rs60814637	G	GA	548.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.32;ReadPosRankSum=-1.608;SOR=0.287;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr7	140508151	.	CAAAA	C	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=12.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.519;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr7	140702199	rs10654746	C	CTT	749.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.39;MQRankSum=1.731;QD=15.30;ReadPosRankSum=-1.765;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:8,41:0.84:49
chr7	141137554	rs1727491	A	G	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	141137554	.	ACG	GCA	1970	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=18;MQ=60.0;NF=30;NR=33;PP=1970;QD=32.1185376962;SC=AGGTAAGGCTACGGGCTCGGC;SbPval=0.62;Source=Platypus;TC=67;TCF=33;TCR=34;TR=63;WE=141137564;WS=141137544;set=Platypus	GT:AD:AF:DP	1/1:4,63:0.94:67
chr7	141137556	rs1619668	G	A	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	141321434	rs142576028	ATG	A	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.913;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr7	141362431	rs6949729	T	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	141420707	rs6971275	T	C	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	141420768	rs6967301	A	G	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	141429224	rs35399772	TC	T	1033.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	141429515	rs6962507	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	141536351	rs370442337	CAG	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.426;SOR=1.228;set=HC	GT:AD:AF:DP	0/1:69,11:0.14:80
chr7	141538812	rs36029840	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.397;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.706;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:58,21:0.27:79
chr7	141635538	rs5888023	C	CA	1932.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	141672705	rs1726866	G	A	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	141708558	rs184387075	T	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	141730618	rs111279755	CTG	C	1006.84	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:3,34:0.92:37
chr7	141731340	rs4374898	G	A	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	141733994	rs10693852	T	TTG	2605.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	141747658	rs2960746	A	G	8187.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.99;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr7	141760228	rs6959057	T	C	2569.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:149,138:0.48:287
chr7	141760293	rs2961073	T	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:72,80:0.53:152
chr7	141762625	rs62477625	A	G	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	141776541	rs117227399	T	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.91;QD=27.08;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	141776782	rs10259247	A	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr7	141784326	rs10952514	G	C	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr7	141794763	rs138070479	ATT	A	555.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=2.375;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,31:0.84:37
chr7	141794790	rs4259331	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr7	141796131	rs6975672	G	A	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.67;QD=25.27;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	141796250	rs6976953	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	141843662	rs76786761	G	A	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	141843780	.	A	T	65.28	.	AC=2;AF=1.00;AN=2;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	141844888	rs12154456	C	G	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	141857846	rs7811706	A	G	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	141898522	rs2960768	T	A	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	141957504	rs7786497	A	G	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	142001030	rs56095598	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	142008403	rs376053846	C	G	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-0.340;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:49,30:0.38:79
chr7	142008408	rs370407588	T	G	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.231;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-0.311;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:52,31:0.37:83
chr7	142008434	.	G	A	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=0.399;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:80,39:0.33:119
chr7	142008440	.	T	C	1545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.119;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:87,43:0.33:130
chr7	142008442	.	T	C	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=0.270;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:91,44:0.33:135
chr7	142008453	.	C	G	1851.77	.	AC=1;AF=0.500;AN=2;DP=165;set=Intersection	GT:AD:AF:DP	0/1:109,54:0.33:163
chr7	142008469	.	C	T	2136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=0.595;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:137,61:0.31:198
chr7	142008477	.	G	A	2336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=0.656;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:146,63:0.30:209
chr7	142008484	.	T	A	2426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=-0.709;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:152,70:0.32:222
chr7	142008491	.	A	G	2408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-0.010;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:167,70:0.30:237
chr7	142008502	rs370591069	TA	CG	2449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.507;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.407;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:178,72:0.29:250
chr7	142008529	rs367608484	C	G	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=8.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-1.384;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:199,66:0.25:265
chr7	142008533	.	CCG	C	2014.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.039;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=4.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-1.046;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:208,63:0.23:271
chr7	142008536	.	T	TAC	1716.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=2.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=0.565;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:205,56:0.21:261
chr7	142008542	rs373709044	A	G	1517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=0.642;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:199,53:0.21:252
chr7	142008573	rs375153223	G	A	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=1.002;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:184,48:0.21:232
chr7	142008577	rs369645839	G	A	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=4.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=1.131;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:190,49:0.21:239
chr7	142008581	rs371566486	CT	AC	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=3.748;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=0.622;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:182,49:0.21:231
chr7	142008593	rs368999058	T	C	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=-0.822;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:179,53:0.23:232
chr7	142008634	.	ACG	A	878.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.317;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=6.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-0.390;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:142,32:0.18:174
chr7	142008638	.	C	A	884.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.865;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=4.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-4.316;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:141,32:0.18:173
chr7	142008639	.	A	AGG	878.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.126;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=4.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-3.965;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:141,32:0.18:173
chr7	142008644	.	CA	TC	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=4.855;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-0.362;SOR=1.156;set=HC	GT:AD:AF:DP	0/1:141,31:0.18:172
chr7	142008653	rs370721246	T	A	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=3.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.376;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:136,30:0.18:166
chr7	142008672	.	G	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.372;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:126,26:0.17:152
chr7	142008675	rs376217909	A	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.498;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:127,26:0.17:153
chr7	142008718	.	T	C	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=1.056;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:91,28:0.24:119
chr7	142008727	.	G	T	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.508;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=0.143;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:81,30:0.27:111
chr7	142008733	.	A	G	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.885;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=1.450;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:88,29:0.25:117
chr7	142008737	.	T	C	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.781;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=1.146;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:89,31:0.26:120
chr7	142008745	.	TC	CA	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.871;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=2.554;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=1.226;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:99,35:0.26:134
chr7	142008750	.	A	T	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.952;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=1.954;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:108,35:0.24:143
chr7	142008783	.	A	G	2141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.259;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:130,59:0.31:189
chr7	142008783	.	AAA	GAC	705	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=30;MMLQ=27;MQ=60.0;NF=14;NR=9;PP=705;QD=32.9768641244;SC=CTTCTCACCTAAATCTCCAGA;SbPval=0.69;Source=Platypus;TC=76;TCF=43;TCR=33;TR=23;WE=142008793;WS=142008773;set=Platypus	GT:AD:AF:DP	0/1:53,23:0.30:76
chr7	142008785	.	A	C	2141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-1.795;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:130,63:0.33:193
chr7	142008803	.	C	T	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.272;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:139,68:0.33:207
chr7	142008879	.	C	T	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.459;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=3.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=-2.525;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:76,47:0.38:123
chr7	142008881	.	G	A	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.486;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=3.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-2.593;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:74,45:0.38:119
chr7	142008884	.	A	G	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.915;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=-2.400;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:73,43:0.37:116
chr7	142008887	.	T	C	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-1.591;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:73,40:0.35:113
chr7	142008932	rs375535167	GC	G	483.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr7	142008934	.	A	T	492.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=1.289;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr7	142008939	.	A	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=4.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=1.208;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr7	142008941	.	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.973;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=4.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=1.124;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr7	142008959	.	G	A	183.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	142013130	rs361400	C	T	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	142013384	rs361401	G	C	10244.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr7	142028108	rs361428	A	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.63;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	142028118	rs361429	C	A	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.37;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	142028462	.	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-18.761;QD=0.24;ReadPosRankSum=-3.580;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:371,28:0.07:399
chr7	142028472	.	C	T	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=443;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-17.523;QD=0.45;ReadPosRankSum=-2.411;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:407,35:0.08:442
chr7	142028474	.	TC	GG	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DP=440;ExcessHet=3.0103;FS=2.192;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-17.482;QD=0.93;ReadPosRankSum=-2.147;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:405,35:0.08:440
chr7	142028485	.	C	A	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941;ClippingRankSum=0.000;DP=460;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-15.950;QD=1.55;ReadPosRankSum=-3.400;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:411,48:0.10:459
chr7	142028490	.	A	C	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-16.005;QD=1.67;ReadPosRankSum=-2.414;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:414,48:0.10:462
chr7	142028500	.	A	G	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141;ClippingRankSum=0.000;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-16.376;QD=1.99;ReadPosRankSum=-0.926;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:448,55:0.11:503
chr7	142028506	.	CA	TG	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DP=513;ExcessHet=3.0103;FS=0.838;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-16.854;QD=1.99;ReadPosRankSum=-0.392;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:454,58:0.11:512
chr7	142028533	.	C	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DP=492;ExcessHet=3.0103;FS=1.993;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-16.948;QD=1.32;ReadPosRankSum=2.760;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:442,49:0.10:491
chr7	142028538	.	G	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-16.341;QD=1.35;ReadPosRankSum=2.746;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:425,47:0.10:472
chr7	142028540	.	G	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DP=466;ExcessHet=3.0103;FS=3.131;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-16.249;QD=1.42;ReadPosRankSum=2.412;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:418,47:0.10:465
chr7	142028542	.	G	T	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DP=460;ExcessHet=3.0103;FS=3.115;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-16.138;QD=1.46;ReadPosRankSum=1.908;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:412,47:0.10:459
chr7	142028546	.	TC	CT	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DP=447;ExcessHet=3.0103;FS=1.954;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-16.087;QD=1.60;ReadPosRankSum=0.843;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:400,46:0.10:446
chr7	142028551	.	CA	GG	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DP=433;ExcessHet=3.0103;FS=0.916;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-15.905;QD=1.45;ReadPosRankSum=0.487;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:388,44:0.10:432
chr7	142028555	.	C	T	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-15.802;QD=1.37;ReadPosRankSum=0.439;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:380,42:0.10:422
chr7	142032115	rs10567930	CTG	C	170.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr7	142032161	rs149220181	TGA	T	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr7	142032326	.	A	C	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-15.387;QD=1.28;ReadPosRankSum=-6.008;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:249,25:0.09:274
chr7	142032336	.	T	C	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-14.150;QD=1.92;ReadPosRankSum=-7.181;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:254,39:0.13:293
chr7	142032373	.	CC	TT	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=0.564;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-14.563;QD=3.32;ReadPosRankSum=5.081;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:288,49:0.15:337
chr7	142032391	.	A	AAC	1066.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.133;ClippingRankSum=0.000;DP=338;ExcessHet=3.0103;FS=3.651;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-15.054;QD=3.23;ReadPosRankSum=7.441;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:283,47:0.14:330
chr7	142032393	.	GGA	G	981.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.061;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=4.613;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-15.601;QD=2.78;ReadPosRankSum=7.016;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:306,47:0.13:353
chr7	142032400	.	G	C	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=5.685;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-15.677;QD=2.80;ReadPosRankSum=6.706;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:302,46:0.13:348
chr7	142032411	.	G	A	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DP=377;ExcessHet=3.0103;FS=2.800;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-16.267;QD=2.06;ReadPosRankSum=4.639;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:331,45:0.12:376
chr7	142032417	.	T	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-17.360;QD=1.31;ReadPosRankSum=4.656;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:380,42:0.10:422
chr7	142032421	.	C	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.943;ClippingRankSum=0.000;DP=409;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-16.910;QD=1.40;ReadPosRankSum=3.622;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:368,40:0.10:408
chr7	142032429	.	G	C	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;ClippingRankSum=0.000;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-17.209;QD=1.10;ReadPosRankSum=-0.398;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:382,40:0.09:422
chr7	142032439	.	C	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;ClippingRankSum=0.000;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-18.345;QD=0.61;ReadPosRankSum=-5.243;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:391,36:0.08:427
chr7	142032445	.	T	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-19.060;QD=0.20;ReadPosRankSum=-5.148;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:421,28:0.06:449
chr7	142032571	.	G	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-4.107;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:236,45:0.16:281
chr7	142032610	.	A	G	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=2.641;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:152,55:0.27:207
chr7	142032613	.	TG	CA	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=2.460;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:147,55:0.27:202
chr7	142032646	rs78118526	G	A	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.00;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	142032646	.	GTGTACATAGTGCAA	ATGTACATAGTGCAA,ATGTACATGGTGAAG	2800	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=26;MMLQ=26;MQ=60.0;NF=28,9;NR=44,10;PP=2800,807;QD=20;SC=TTAAAAATGTGTGTACATAGT;SbPval=0.54;Source=Platypus;TC=72;TCF=28;TCR=44;TR=72,19;WE=142032668;WS=142032636;set=Platypus	GT:AF:DP	0/1:1.00:72
chr7	142032654	rs190649630	A	G	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-0.058;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:82,42:0.34:124
chr7	142032658	.	C	A	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=3.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=0.040;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:78,39:0.33:117
chr7	142032660	.	A	G	1371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=5.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.135;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:78,38:0.33:116
chr7	142032677	rs375896144	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:61,31:0.34:92
chr7	142032713	rs371809716	A	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=12.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-2.649;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr7	142032729	.	A	G	57	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=3;HapScore=2;MGOF=59;MMLQ=26;MQ=60.0;NF=0;NR=5;PP=57;QD=18.3542425094;SC=GAGAATACTTAAAATGTACTC;SbPval=1.0;Source=Platypus;TC=18;TCF=1;TCR=17;TR=5;WE=142032737;WS=142032719;set=Platypus	GT:AD:AF:DP	0/1:13,5:0.28:18
chr7	142045446	rs56060483	G	C	3049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.60;ReadPosRankSum=0.150;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:85,79:0.48:164
chr7	142045449	rs371824542	A	G	3049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.73;ReadPosRankSum=0.141;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:90,82:0.48:172
chr7	142045518	.	G	A	2817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=0.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=1.902;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:205,154:0.43:359
chr7	142045613	.	G	T	4374.77	.	AC=1;AF=0.500;AN=2;DP=496;set=Intersection	GT:AD:AF:DP	0/1:270,222:0.45:492
chr7	142045678	rs61750018	ACT	GTC	10397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.201;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.530;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=1.654;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:418,277:0.40:695
chr7	142045683	rs61750019	A	G	10928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.074;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=0.763;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:416,283:0.40:699
chr7	142045690	rs61750021	A	G	10887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.042;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=0.673;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:428,289:0.40:717
chr7	142045692	rs61750022	AC	GT	10908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.015;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=1.120;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=0.748;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:431,290:0.40:721
chr7	142045802	rs2855871	T	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:121,143:0.54:264
chr7	142045848	rs17225	T	C	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:119,109:0.48:228
chr7	142045877	rs17226	G	T	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:91,139:0.60:230
chr7	142045899	rs2974900	A	G	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:160,82:0.34:242
chr7	142045912	rs374368376	A	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:167,73:0.30:240
chr7	142099425	.	A	G	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=9.483;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-5.388;QD=12.26;ReadPosRankSum=-2.098;SOR=0.282;set=HC	GT:AD:AF:DP	0/1:99,56:0.36:155
chr7	142099438	.	A	G	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.562;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=9.929;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-7.879;QD=5.02;ReadPosRankSum=0.522;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:179,86:0.32:265
chr7	142099484	.	G	C	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-10.984;QD=2.64;ReadPosRankSum=3.909;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:378,114:0.23:492
chr7	142099512	rs373830246	T	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-10.793;QD=0.87;ReadPosRankSum=-2.438;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:508,93:0.15:601
chr7	142099533	.	T	C	3075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-17.493;QD=4.57;ReadPosRankSum=-0.859;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:556,117:0.17:673
chr7	142099537	.	G	T	3009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DP=669;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-17.967;QD=4.51;ReadPosRankSum=-1.879;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:556,111:0.17:667
chr7	142099541	.	T	C	2826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-18.278;QD=4.29;ReadPosRankSum=-1.711;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:559,100:0.15:659
chr7	142099548	.	A	G	2242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DP=650;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-18.782;QD=3.46;ReadPosRankSum=-3.926;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:554,94:0.15:648
chr7	142119831	rs361390	G	A	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	142120168	rs57417024	T	TCA	2175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=17.00;ReadPosRankSum=-0.231;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:25,103:0.80:128
chr7	142124170	rs361452	C	T	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	142124424	rs361449	T	G	8173.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr7	142131709	.	T	C	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.153;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=28.136;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-10.726;QD=2.89;ReadPosRankSum=-5.200;SOR=2.945;set=HC	GT:AD:AF:DP	0/1:271,26:0.09:297
chr7	142131710	.	G	A	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.504;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=26.228;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-10.425;QD=3.22;ReadPosRankSum=-5.261;SOR=2.685;set=HC	GT:AD:AF:DP	0/1:277,28:0.09:305
chr7	142131734	.	A	T	1512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DP=346;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-9.077;QD=4.37;ReadPosRankSum=-3.054;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:288,58:0.17:346
chr7	142131738	.	G	GA	1500.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-9.170;QD=4.26;ReadPosRankSum=-1.427;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:294,58:0.16:352
chr7	142131746	.	T	C	1550.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-9.307;QD=4.30;ReadPosRankSum=1.437;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:303,58:0.16:361
chr7	142131747	rs368257836	G	A	1568.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=2.365;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-9.900;QD=4.25;ReadPosRankSum=1.028;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:307,62:0.17:369
chr7	142131779	rs370810757	A	T	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-9.706;QD=2.10;ReadPosRankSum=5.193;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:317,83:0.21:400
chr7	142131832	rs371240412	C	T	2222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-8.244;QD=7.31;ReadPosRankSum=-2.765;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:232,72:0.24:304
chr7	142131836	rs375356148	C	G	2170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-7.859;QD=7.51;ReadPosRankSum=-3.523;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:221,68:0.24:289
chr7	142131858	rs367836940	C	A	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.288;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-8.965;QD=5.22;ReadPosRankSum=-4.294;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:178,38:0.18:216
chr7	142131868	rs374575972	C	T	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=3.948;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-10.487;QD=2.89;ReadPosRankSum=-3.101;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:172,27:0.14:199
chr7	142131872	rs368030585	G	T	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-10.831;QD=2.23;ReadPosRankSum=-2.526;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:167,23:0.12:190
chr7	142131885	.	A	T	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=3.906;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-11.038;QD=1.87;ReadPosRankSum=-2.535;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:142,15:0.10:157
chr7	142131889	.	A	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.641;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=3.911;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-10.965;QD=1.14;ReadPosRankSum=-2.772;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:140,15:0.10:155
chr7	142131894	.	AA	CG	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.354;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=8.157;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-11.514;QD=0.88;ReadPosRankSum=-1.657;SOR=2.373;set=HC	GT:AD:AF:DP	0/1:125,9:0.07:134
chr7	142139259	rs361374	G	A	2741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=11.266;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=8.904;QD=23.04;ReadPosRankSum=2.459;SOR=1.343;set=HC	GT:AD:AF:DP	0/1:9,110:0.92:119
chr7	142139271	rs146977487	TG	CA	5522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=10.908;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=10.543;QD=36.33;ReadPosRankSum=3.673;SOR=1.293;set=HC	GT:AD:AF:DP	0/1:19,133:0.88:152
chr7	142139296	rs374460258	C	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=5.829;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-13.986;QD=1.32;ReadPosRankSum=-0.834;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:220,33:0.13:253
chr7	142139315	.	G	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;ClippingRankSum=0.000;DP=316;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-15.346;QD=1.08;ReadPosRankSum=-0.280;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:275,41:0.13:316
chr7	142139334	.	CG	C	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DP=362;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-15.097;QD=1.41;ReadPosRankSum=2.678;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:321,36:0.10:357
chr7	142139337	.	C	CCA	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-15.397;QD=1.42;ReadPosRankSum=2.490;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:318,36:0.10:354
chr7	142139339	.	GA	G	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-15.462;QD=1.35;ReadPosRankSum=1.997;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:321,36:0.10:357
chr7	142139348	rs73742284	C	T,A	8997.77	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=2.110;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.39;MQRankSum=4.758;QD=23.87;ReadPosRankSum=1.123;SOR=0.443;set=HC	GT:AD:AF:DP	1/2:3,339,35:0.90,0.09:377
chr7	142139349	.	G	A	384.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=3.145;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-15.899;QD=1.01;ReadPosRankSum=0.866;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:346,35:0.09:381
chr7	142139357	.	C	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DP=395;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-16.168;QD=0.92;ReadPosRankSum=-1.121;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:359,35:0.09:394
chr7	142139383	.	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DP=414;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-18.121;QD=0.21;ReadPosRankSum=-6.205;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:381,31:0.08:412
chr7	142143639	rs377139967	T	G	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=26.525;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-3.856;QD=9.72;ReadPosRankSum=3.788;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:81,34:0.30:115
chr7	142143646	rs369634458	G	A	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=21.458;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-4.515;QD=7.53;ReadPosRankSum=4.304;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:106,34:0.24:140
chr7	142143675	.	A	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=15.760;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-7.262;QD=3.21;ReadPosRankSum=0.728;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:169,30:0.15:199
chr7	142143681	.	A	T	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=19.386;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-7.523;QD=2.83;ReadPosRankSum=-0.027;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:185,27:0.13:212
chr7	142143684	.	C	T	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=19.798;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-7.826;QD=2.15;ReadPosRankSum=-0.437;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:193,26:0.12:219
chr7	142143687	.	A	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.947;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=19.631;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-7.963;QD=2.02;ReadPosRankSum=-1.103;SOR=1.602;set=HC	GT:AD:AF:DP	0/1:200,26:0.12:226
chr7	142143804	rs73742281	A	C	10235.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr7	142143879	rs376540425	A	T	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:177,137:0.44:314
chr7	142143906	.	GT	CC	9239.77	.	AC=1;AF=0.500;AN=2;DP=411;JOINED;set=Intersection	GT:AD:AF:DP	0/1:177,231:0.57:408
chr7	142143941	rs368607254	T	C	8221.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:206,399:0.66:605
chr7	142143953	rs371156869	G	A	9381.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:212,442:0.68:654
chr7	142143993	rs374220425	C	A	20240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.741;ClippingRankSum=0.000;DB;DP=765;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-14.691;QD=26.49;ReadPosRankSum=3.350;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:253,511:0.67:764
chr7	142144004	rs368631399	T	A	21838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=790;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-14.416;QD=27.68;ReadPosRankSum=1.321;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:255,534:0.68:789
chr7	142144022	rs371600923	T	C	13865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-11.339;QD=19.98;ReadPosRankSum=-1.888;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:224,470:0.68:694
chr7	142144025	.	C	A	3325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DP=681;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-7.832;QD=4.89;ReadPosRankSum=-1.191;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:469,211:0.31:680
chr7	142144056	.	G	A	1971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DP=470;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-6.569;QD=4.20;ReadPosRankSum=-1.142;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:338,131:0.28:469
chr7	142144059	.	A	C	7933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DP=445;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-10.233;QD=17.87;ReadPosRankSum=-0.217;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:180,264:0.59:444
chr7	142144091	.	GG	AA	6045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.710;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=4.204;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-8.415;QD=22.31;ReadPosRankSum=-0.986;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:117,154:0.57:271
chr7	142144101	.	C	T	5557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.657;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=6.519;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-8.679;QD=23.45;ReadPosRankSum=-0.578;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:107,130:0.55:237
chr7	142144111	.	T	C	4293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.219;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=7.606;MLEAC=1;MLEAF=0.500;MQ=55.06;MQRankSum=-9.647;QD=22.13;ReadPosRankSum=0.289;SOR=1.205;set=HC	GT:AD:AF:DP	0/1:92,102:0.53:194
chr7	142144129	.	A	G	3113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=4.543;MLEAC=1;MLEAF=0.500;MQ=54.37;MQRankSum=-8.828;QD=22.24;ReadPosRankSum=-1.571;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:61,79:0.56:140
chr7	142144135	.	G	A	2908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.740;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-8.628;QD=23.46;ReadPosRankSum=-2.522;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:52,72:0.58:124
chr7	142144142	.	T	A	2472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=13.712;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-7.924;QD=24.48;ReadPosRankSum=-1.272;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:47,54:0.53:101
chr7	142148850	.	G	A	941.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,27:0.35:77
chr7	142148878	rs370978147	T	C	1750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-11.755;QD=11.22;ReadPosRankSum=1.700;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:105,51:0.33:156
chr7	142148881	rs374566766	C	A	1729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.999;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-12.133;QD=10.48;ReadPosRankSum=2.406;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:114,51:0.31:165
chr7	142148919	rs376682174	C	T	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.033;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=5.153;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-16.236;QD=2.82;ReadPosRankSum=2.839;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:266,84:0.24:350
chr7	142148963	rs371195527	C	T	1814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=5.038;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-18.024;QD=3.52;ReadPosRankSum=-0.377;SOR=1.200;set=HC	GT:AD:AF:DP	0/1:439,76:0.15:515
chr7	142148969	.	AA	TC	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DP=545;ExcessHet=3.0103;FS=6.638;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-18.522;QD=3.24;ReadPosRankSum=-2.366;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:466,76:0.14:542
chr7	142149160	rs17217	T	G	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:8,134:0.94:142
chr7	142149349	rs140504979	A	C	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	142162001	rs73742263	A	C	11433.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr7	142162148	rs71877	C	T	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	142162278	rs361443	C	T	7610.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr7	142162306	rs361442	A	G	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr7	142168348	.	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=29.302;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-10.969;QD=2.49;ReadPosRankSum=0.344;SOR=4.771;set=HC	GT:AD:AF:DP	0/1:106,16:0.13:122
chr7	142168351	.	T	C	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.189;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=32.164;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-11.457;QD=2.35;ReadPosRankSum=0.478;SOR=4.963;set=HC	GT:AD:AF:DP	0/1:116,17:0.13:133
chr7	142168362	.	A	T	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.586;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=27.273;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-12.725;QD=2.85;ReadPosRankSum=0.197;SOR=3.368;set=HC	GT:AD:AF:DP	0/1:142,22:0.13:164
chr7	142168365	.	C	T	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.619;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=35.224;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-12.766;QD=2.70;ReadPosRankSum=0.359;SOR=3.747;set=HC	GT:AD:AF:DP	0/1:158,24:0.13:182
chr7	142168371	.	C	T	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.942;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=28.347;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-12.672;QD=2.92;ReadPosRankSum=-0.753;SOR=2.781;set=HC	GT:AD:AF:DP	0/1:177,31:0.15:208
chr7	142168414	rs374005717	G	C	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=14.714;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-14.588;QD=3.64;ReadPosRankSum=-3.384;SOR=1.645;set=HC	GT:AD:AF:DP	0/1:295,108:0.27:403
chr7	142168429	rs55634899	A	G	19430.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.31;QD=44.06;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr7	142168452	rs361355	C	A	19383.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.51;QD=43.56;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr7	142168662	rs73742240	CG	TC	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	142168799	.	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-3.673;QD=1.08;ReadPosRankSum=2.033;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:111,12:0.10:123
chr7	142168803	.	C	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=-3.428;QD=1.25;ReadPosRankSum=2.183;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:106,12:0.10:118
chr7	142168818	.	C	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-3.200;QD=2.44;ReadPosRankSum=2.487;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:88,13:0.13:101
chr7	142168819	rs361350	G	A	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:13,87:0.87:100
chr7	142168825	.	C	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-3.137;QD=2.79;ReadPosRankSum=2.416;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:83,13:0.14:96
chr7	142168835	.	CA	TG	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.99;MQRankSum=-2.922;QD=3.14;ReadPosRankSum=1.714;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:77,13:0.14:90
chr7	142168839	.	G	T	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-2.846;QD=3.25;ReadPosRankSum=1.113;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:75,13:0.15:88
chr7	142168856	rs73742239	C	G	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:13,58:0.82:71
chr7	142168862	.	A	G	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=52.31;MQRankSum=-2.093;QD=5.05;ReadPosRankSum=-1.308;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr7	142176378	rs361393	A	G	12146.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:1,484:1.00:485
chr7	142180574	.	G	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.741;ClippingRankSum=0.000;DP=648;ExcessHet=3.0103;FS=18.697;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-24.878;QD=0.12;ReadPosRankSum=-2.220;SOR=3.118;set=HC	GT:AD:AF:DP	0/1:605,43:0.07:648
chr7	142180578	.	G	A	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.998;ClippingRankSum=0.000;DP=700;ExcessHet=3.0103;FS=18.641;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-25.444;QD=0.81;ReadPosRankSum=-3.236;SOR=2.758;set=HC	GT:AD:AF:DP	0/1:643,57:0.08:700
chr7	142180584	rs373875376	TCC	T	626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.514;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=21.268;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-26.521;QD=0.83;ReadPosRankSum=-3.762;SOR=3.565;set=HC	GT:AD:AF:DP	0/1:693,64:0.08:757
chr7	142180591	.	TGG	T	878.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.942;ClippingRankSum=0.000;DP=789;ExcessHet=3.0103;FS=21.451;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-27.131;QD=1.11;ReadPosRankSum=-3.587;SOR=3.120;set=HC	GT:AD:AF:DP	0/1:720,69:0.09:789
chr7	142180593	.	G	GTTTT	902.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=14.359;ClippingRankSum=0.000;DP=780;ExcessHet=3.0103;FS=21.451;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-26.973;QD=1.16;ReadPosRankSum=-3.617;SOR=3.134;set=HC	GT:AD:AF:DP	0/1:711,69:0.09:780
chr7	142180596	.	G	A	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.168;ClippingRankSum=0.000;DP=790;ExcessHet=3.0103;FS=21.754;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-26.806;QD=1.24;ReadPosRankSum=-3.864;SOR=2.910;set=HC	GT:AD:AF:DP	0/1:712,78:0.10:790
chr7	142180618	.	TG	CA	3479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.882;ClippingRankSum=0.000;DP=872;ExcessHet=3.0103;FS=7.710;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-23.482;QD=4.00;ReadPosRankSum=-3.501;SOR=1.311;set=HC	GT:AD:AF:DP	0/1:737,134:0.15:871
chr7	142180625	.	T	C	4102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.101;ClippingRankSum=0.000;DP=852;ExcessHet=3.0103;FS=10.844;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-22.194;QD=4.82;ReadPosRankSum=-2.615;SOR=1.415;set=HC	GT:AD:AF:DP	0/1:707,144:0.17:851
chr7	142180633	.	G	T	4675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.425;ClippingRankSum=0.000;DP=841;ExcessHet=3.0103;FS=15.346;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-21.399;QD=5.57;ReadPosRankSum=-1.218;SOR=1.615;set=HC	GT:AD:AF:DP	0/1:683,157:0.19:840
chr7	142180635	.	T	G	4816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.029;ClippingRankSum=0.000;DP=842;ExcessHet=3.0103;FS=15.346;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-21.165;QD=5.73;ReadPosRankSum=-0.716;SOR=1.570;set=HC	GT:AD:AF:DP	0/1:681,160:0.19:841
chr7	142180640	.	GA	TG	5422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.676;ClippingRankSum=0.000;DP=842;ExcessHet=3.0103;FS=14.834;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-20.366;QD=6.44;ReadPosRankSum=0.124;SOR=1.527;set=HC	GT:AD:AF:DP	0/1:670,172:0.20:842
chr7	142180646	.	AG	CT	6086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.039;ClippingRankSum=0.000;DP=846;ExcessHet=3.0103;FS=15.961;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-19.058;QD=7.20;ReadPosRankSum=0.831;SOR=1.590;set=HC	GT:AD:AF:DP	0/1:657,188:0.22:845
chr7	142180704	rs368420989	G	T	5489.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:373,292:0.44:665
chr7	142180737	rs372013265	T	A	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:265,185:0.41:450
chr7	142180770	rs375278683	T	C	1383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=10.077;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-8.368;QD=3.64;ReadPosRankSum=-1.928;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:284,96:0.25:380
chr7	142197606	rs373222208	T	C	1893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.955;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-2.624;QD=21.04;ReadPosRankSum=-1.339;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:40,50:0.56:90
chr7	142197613	rs376535639	T	C	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.849;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-2.869;QD=19.67;ReadPosRankSum=-0.199;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:45,47:0.51:92
chr7	142197835	rs17280	C	T	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=27.28;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	142197986	rs148941368	T	C	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	142206472	.	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=7.562;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-6.134;QD=2.06;ReadPosRankSum=-2.368;SOR=1.522;set=HC	GT:AD:AF:DP	0/1:72,10:0.12:82
chr7	142206473	rs11764626	G	A	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:11,72:0.87:83
chr7	142206477	.	C	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=12.249;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-6.151;QD=1.98;ReadPosRankSum=-1.992;SOR=1.716;set=HC	GT:AD:AF:DP	0/1:80,11:0.12:91
chr7	142206497	.	TG	CA	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=6.165;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-5.323;QD=0.68;ReadPosRankSum=-0.486;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:111,13:0.10:124
chr7	142206520	.	C	A	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=9.266;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-7.268;QD=3.22;ReadPosRankSum=-2.238;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:137,24:0.15:161
chr7	142206525	.	G	A	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=9.184;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-7.526;QD=2.94;ReadPosRankSum=-1.761;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:145,24:0.14:169
chr7	142206531	.	A	G	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=7.125;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-7.148;QD=2.87;ReadPosRankSum=-1.593;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:155,25:0.14:180
chr7	142206551	.	G	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=6.291;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.899;QD=1.06;ReadPosRankSum=0.270;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:169,20:0.11:189
chr7	142206558	rs369604667	T	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=4.802;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-6.752;QD=0.88;ReadPosRankSum=-0.060;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:170,19:0.10:189
chr7	142206827	.	A	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-6.974;QD=0.85;ReadPosRankSum=-1.066;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:55,6:0.10:61
chr7	142206834	.	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-6.974;QD=0.75;ReadPosRankSum=-0.776;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:55,6:0.10:61
chr7	142206838	.	C	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-7.093;QD=0.77;ReadPosRankSum=-0.352;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:57,6:0.10:63
chr7	142206846	.	C	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-6.232;QD=0.50;ReadPosRankSum=0.435;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:62,6:0.09:68
chr7	142211193	rs6977669	C	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	142223942	rs368751965	A	G	1857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-6.950;QD=9.15;ReadPosRankSum=0.068;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:147,56:0.28:203
chr7	142223948	.	TAC	T	1821.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=2.720;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-7.104;QD=8.67;ReadPosRankSum=0.946;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:154,56:0.27:210
chr7	142223951	.	A	G	1805.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-6.981;QD=8.56;ReadPosRankSum=1.520;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:156,55:0.26:211
chr7	142223953	.	T	TTC	1922.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-7.023;QD=9.03;ReadPosRankSum=1.930;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:158,55:0.26:213
chr7	142223959	.	C	T	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-7.350;QD=8.76;ReadPosRankSum=3.134;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:158,57:0.27:215
chr7	142223962	.	G	C	1922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-7.350;QD=8.94;ReadPosRankSum=3.481;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:158,57:0.27:215
chr7	142223964	.	A	T	1913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-7.525;QD=8.82;ReadPosRankSum=3.671;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:159,58:0.27:217
chr7	142223967	rs361467	T	C	2063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-7.614;QD=9.34;ReadPosRankSum=4.210;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:163,58:0.26:221
chr7	142223971	.	C	T	2294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-8.422;QD=9.72;ReadPosRankSum=4.193;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:174,62:0.26:236
chr7	142223995	.	G	A	2416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-9.395;QD=9.82;ReadPosRankSum=2.327;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:176,70:0.28:246
chr7	142223997	.	A	T	2374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-9.370;QD=9.69;ReadPosRankSum=2.267;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:175,70:0.29:245
chr7	142224020	.	A	ATT	2060.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-8.942;QD=8.84;ReadPosRankSum=0.725;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:171,62:0.27:233
chr7	142224021	.	GCA	G	2015.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=3.421;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-9.095;QD=8.58;ReadPosRankSum=0.589;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:176,59:0.25:235
chr7	142224040	.	CA	TG	1472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=2.932;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-9.896;QD=6.98;ReadPosRankSum=-1.569;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:164,47:0.22:211
chr7	142224058	.	C	G	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.376;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=9.672;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-11.783;QD=4.14;ReadPosRankSum=-1.912;SOR=1.545;set=HC	GT:AD:AF:DP	0/1:155,29:0.16:184
chr7	142224062	.	GC	TT	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.098;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=12.281;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-12.494;QD=2.26;ReadPosRankSum=-0.818;SOR=2.010;set=HC	GT:AD:AF:DP	0/1:146,21:0.13:167
chr7	142224072	.	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=10.606;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-11.929;QD=1.83;ReadPosRankSum=-0.836;SOR=1.887;set=HC	GT:AD:AF:DP	0/1:144,19:0.12:163
chr7	142231625	rs17249	C	A	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	142231694	.	T	C	1210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.236;QD=4.45;ReadPosRankSum=-2.738;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:227,45:0.17:272
chr7	142231698	.	G	A	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-3.089;QD=4.66;ReadPosRankSum=-1.995;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:234,49:0.17:283
chr7	142231701	rs17248	G	T	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-3.096;QD=4.92;ReadPosRankSum=-1.019;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:235,49:0.17:284
chr7	142231703	.	G	T	1654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.996;QD=5.91;ReadPosRankSum=-1.246;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:229,51:0.18:280
chr7	142231725	.	C	T	1852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-3.709;QD=6.59;ReadPosRankSum=0.299;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:221,60:0.21:281
chr7	142231740	rs372096379	T	C	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-3.906;QD=7.42;ReadPosRankSum=-1.290;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:193,58:0.23:251
chr7	142231744	rs376782927	A	G	1828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-3.796;QD=7.56;ReadPosRankSum=-2.091;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:184,58:0.24:242
chr7	142231762	.	A	T	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.251;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=20.204;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-6.398;QD=6.57;ReadPosRankSum=1.520;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:158,32:0.17:190
chr7	142231767	.	A	G	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.230;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=22.947;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-6.752;QD=4.18;ReadPosRankSum=2.632;SOR=2.672;set=HC	GT:AD:AF:DP	0/1:148,27:0.15:175
chr7	142231769	.	T	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.289;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=23.051;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-6.685;QD=3.84;ReadPosRankSum=2.432;SOR=2.688;set=HC	GT:AD:AF:DP	0/1:145,27:0.16:172
chr7	142231771	.	T	C	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.262;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=20.807;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-6.699;QD=4.03;ReadPosRankSum=2.509;SOR=2.565;set=HC	GT:AD:AF:DP	0/1:140,26:0.16:166
chr7	142231772	.	T	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.288;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=18.787;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-6.809;QD=4.11;ReadPosRankSum=2.799;SOR=2.506;set=HC	GT:AD:AF:DP	0/1:139,25:0.15:164
chr7	142231780	.	C	T	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=16.869;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-6.501;QD=4.38;ReadPosRankSum=2.104;SOR=2.408;set=HC	GT:AD:AF:DP	0/1:121,24:0.17:145
chr7	142231781	.	A	C	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.122;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=16.816;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-6.476;QD=4.46;ReadPosRankSum=1.956;SOR=2.373;set=HC	GT:AD:AF:DP	0/1:120,24:0.17:144
chr7	142231793	.	A	AT	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.820;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=14.704;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-6.178;QD=5.13;ReadPosRankSum=1.227;SOR=2.204;set=HC	GT:AD:AF:DP	0/1:104,23:0.18:127
chr7	142231795	.	G	T	621.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.069;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=10.745;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-6.201;QD=5.10;ReadPosRankSum=0.355;SOR=2.018;set=HC	GT:AD:AF:DP	0/1:100,22:0.18:122
chr7	142231796	.	CCA	C	615.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.765;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=10.779;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-6.141;QD=5.13;ReadPosRankSum=0.124;SOR=2.004;set=HC	GT:AD:AF:DP	0/1:98,22:0.18:120
chr7	142231800	.	G	GA	588.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.580;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=13.015;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-5.866;QD=5.30;ReadPosRankSum=1.509;SOR=2.131;set=HC	GT:AD:AF:DP	0/1:89,22:0.20:111
chr7	142231805	.	C	CTG	540.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.195;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=7.316;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-6.078;QD=5.35;ReadPosRankSum=0.517;SOR=1.747;set=HC	GT:AD:AF:DP	0/1:82,19:0.19:101
chr7	142231806	.	C	G	558.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=5.658;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-6.393;QD=5.70;ReadPosRankSum=-0.742;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:81,17:0.17:98
chr7	142231808	.	GCC	G	432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.169;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=5.670;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-6.318;QD=4.51;ReadPosRankSum=-1.130;SOR=1.549;set=HC	GT:AD:AF:DP	0/1:79,17:0.18:96
chr7	142232163	rs144354683	T	C	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	142242670	rs17219	T	G	7946.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=26.40;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	142247134	rs361363	T	C	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr7	142247263	.	G	A	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;ClippingRankSum=0.000;DP=388;ExcessHet=3.0103;FS=10.320;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-9.672;QD=5.54;ReadPosRankSum=-5.753;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:313,74:0.19:387
chr7	142247270	rs375846702	TG	CA	2254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.203;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=6.845;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-9.681;QD=5.58;ReadPosRankSum=-2.579;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:327,77:0.19:404
chr7	142247288	.	T	C	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DP=409;ExcessHet=3.0103;FS=6.069;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-8.955;QD=3.44;ReadPosRankSum=0.656;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:306,97:0.24:403
chr7	142247347	rs361359	AT	CC	2907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.381;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=12.923;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-6.716;QD=7.86;ReadPosRankSum=1.353;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:280,90:0.24:370
chr7	142247380	rs374995027	T	A	1345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=6.013;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.804;QD=4.47;ReadPosRankSum=-2.833;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:240,61:0.20:301
chr7	142247396	.	A	T	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=6.550;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.524;QD=3.49;ReadPosRankSum=-1.095;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:244,38:0.13:282
chr7	142247410	rs56172210	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.465;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=6.625;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-3.051;QD=1.23;ReadPosRankSum=-0.802;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:244,26:0.10:270
chr7	142247417	rs370449003	AC	A	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=4.066;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-3.343;QD=0.48;ReadPosRankSum=-1.383;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:259,23:0.08:282
chr7	142247425	.	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=5.989;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-3.550;QD=0.16;ReadPosRankSum=-2.276;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:254,20:0.07:274
chr7	142247494	.	C	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=2.759;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-8.582;QD=0.49;ReadPosRankSum=-1.879;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:224,25:0.10:249
chr7	142247529	.	GGC	G	1019.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=8.605;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-8.419;QD=5.10;ReadPosRankSum=-0.023;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:165,35:0.17:200
chr7	142247535	.	G	GAA	1118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=11.215;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-8.053;QD=5.71;ReadPosRankSum=-0.756;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:157,39:0.20:196
chr7	142247538	.	CTG	C	258.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-3.364;QD=1.35;ReadPosRankSum=-3.447;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:172,19:0.10:191
chr7	142247539	.	T	C	1440.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=11.503;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-7.576;QD=7.70;ReadPosRankSum=-0.344;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:148,39:0.21:187
chr7	142247540	.	G	A	1527.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=12.741;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-7.901;QD=8.08;ReadPosRankSum=-0.917;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:147,42:0.22:189
chr7	142247541	.	C	CAT	282.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-3.049;QD=1.48;ReadPosRankSum=-2.950;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:172,19:0.10:191
chr7	142247546	.	C	A	1622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=11.557;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-8.464;QD=8.32;ReadPosRankSum=-1.507;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:145,50:0.26:195
chr7	142247554	rs10265119	C	G	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-2.894;QD=1.71;ReadPosRankSum=-0.333;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:175,22:0.11:197
chr7	142247567	rs372792593	A	G	2952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-9.376;QD=15.14;ReadPosRankSum=2.307;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:116,79:0.41:195
chr7	142247571	rs376050671	A	G	3052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=5.117;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-9.358;QD=15.66;ReadPosRankSum=2.487;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:112,83:0.43:195
chr7	142247605	rs370122363	G	A	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=5.248;MLEAC=1;MLEAF=0.500;MQ=55.40;MQRankSum=-3.926;QD=6.18;ReadPosRankSum=-0.354;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:95,54:0.36:149
chr7	142250938	rs361439	T	G	4535.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	142250988	rs361437	G	A	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	142251132	rs361436	G	T	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr7	142326783	rs17262	A	G	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	142326909	rs76454382	C	G	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	142334744	rs17211	C	A	8274.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr7	142378633	rs17243	G	A	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr7	142378831	rs76429157	C	G	9413.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr7	142423161	rs112325538	A	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	142423562	rs62001054	C	T	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	142428611	rs361326	C	T	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	142428626	rs361327	A	C	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	142429001	rs17213	C	T	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	142448199	rs112413030	GGGTGGAAA	G	1719.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	142457264	.	T	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=2.192;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-13.235;QD=0.47;ReadPosRankSum=-0.573;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:158,19:0.11:177
chr7	142457276	.	T	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=7.397;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-14.814;QD=0.18;ReadPosRankSum=0.319;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:205,16:0.07:221
chr7	142458304	.	T	A	842	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=4;MGOF=25;MMLQ=22;MQ=57.04;NF=18;NR=6;PP=842;QD=36.5321338561;SC=AGCCTCACTGTGCTTGTTAAG;SbPval=0.69;Source=Platypus;TC=63;TCF=45;TCR=18;TR=24;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:39,24:0.38:63
chr7	142458316	.	A	T	842	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=3;HapScore=4;MGOF=25;MMLQ=26;MQ=56.83;NF=22;NR=8;PP=842;QD=29.2257070849;SC=CTTGTTAAGGATTTCTAATTA;SbPval=0.78;Source=Platypus;TC=73;TCF=49;TCR=24;TR=30;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:43,30:0.41:73
chr7	142458371	rs367779270	T	C	1456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-13.402;QD=5.78;ReadPosRankSum=3.423;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:162,90:0.36:252
chr7	142458409	rs200665515	C	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-2.423;QD=0.35;ReadPosRankSum=-0.464;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:287,23:0.07:310
chr7	142458412	rs202003805	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-2.813;QD=0.50;ReadPosRankSum=-0.126;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:278,24:0.08:302
chr7	142458414	.	C	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-3.196;QD=0.49;ReadPosRankSum=0.403;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:281,25:0.08:306
chr7	142458437	rs372637371	C	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-4.585;QD=1.22;ReadPosRankSum=4.342;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:248,29:0.10:277
chr7	142458451	rs111033566	A	T	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=7.128;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-11.530;QD=1.66;ReadPosRankSum=-2.446;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:205,46:0.18:251
chr7	142458511	rs138464021	G	T	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=4.278;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-12.668;QD=1.30;ReadPosRankSum=-0.611;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:289,35:0.11:324
chr7	142458523	rs149246646	T	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.545;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=9.715;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-13.817;QD=0.66;ReadPosRankSum=-1.603;SOR=1.511;set=HC	GT:AD:AF:DP	0/1:296,27:0.08:323
chr7	142458526	rs144422014	AC	GG	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.171;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=9.711;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-14.397;QD=0.66;ReadPosRankSum=-2.267;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:291,27:0.08:318
chr7	142458531	rs147366981	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.758;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=8.514;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-14.812;QD=0.43;ReadPosRankSum=-2.048;SOR=1.498;set=HC	GT:AD:AF:DP	0/1:290,24:0.08:314
chr7	142458697	rs373299247	T	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=11.635;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-2.087;QD=1.84;ReadPosRankSum=1.553;SOR=2.791;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chr7	142458700	rs376748793	G	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.535;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=14.880;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-2.720;QD=3.46;ReadPosRankSum=0.354;SOR=3.231;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr7	142458737	rs370066365	C	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.429;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-1.721;QD=8.37;ReadPosRankSum=0.914;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr7	142458737	.	CCT	GCC	309	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=2;MGOF=32;MMLQ=27;MQ=52.84;NF=10;NR=3;PP=309;QD=27.8821442202;SC=AAGACAGGAACCTCTCACACC;SbPval=0.85;Source=Platypus;TC=35;TCF=23;TCR=12;TR=13;WE=142458747;WS=142458727;set=Platypus	GT:AD:AF:DP	0/1:22,13:0.37:35
chr7	142458739	rs374137559	T	C	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.403;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-1.076;QD=7.39;ReadPosRankSum=0.617;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr7	142458829	rs377669553	A	G	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.411;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-5.506;QD=8.06;ReadPosRankSum=-0.453;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:121,41:0.25:162
chr7	142458837	rs370580835	A	T	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.579;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-5.378;QD=7.64;ReadPosRankSum=-0.470;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:126,40:0.24:166
chr7	142458841	rs375181092	AT	A	1263.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:128,41:0.24:169
chr7	142458873	rs373388800	A	C	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.416;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=7.887;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-6.458;QD=6.94;ReadPosRankSum=-1.686;SOR=1.427;set=HC	GT:AD:AF:DP	0/1:106,33:0.24:139
chr7	142458881	rs376074412	A	T	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=11.117;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-7.307;QD=6.14;ReadPosRankSum=0.209;SOR=1.764;set=HC	GT:AD:AF:DP	0/1:102,25:0.20:127
chr7	142458884	rs370405149	C	G	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=9.619;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-7.323;QD=5.81;ReadPosRankSum=0.396;SOR=1.736;set=HC	GT:AD:AF:DP	0/1:98,24:0.20:122
chr7	142458886	rs373808731	T	A	678.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.864;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=9.619;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-7.323;QD=5.56;ReadPosRankSum=0.561;SOR=1.736;set=HC	GT:AD:AF:DP	0/1:98,24:0.20:122
chr7	142458887	rs368632869	T	C	684.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.597;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=9.661;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-7.288;QD=5.66;ReadPosRankSum=0.514;SOR=1.768;set=HC	GT:AD:AF:DP	0/1:97,24:0.20:121
chr7	142458898	rs371109898	A	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.088;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=7.002;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-7.814;QD=4.89;ReadPosRankSum=1.895;SOR=1.551;set=HC	GT:AD:AF:DP	0/1:84,18:0.18:102
chr7	142458902	.	G	C	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.415;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=7.724;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-8.159;QD=4.14;ReadPosRankSum=2.369;SOR=1.754;set=HC	GT:AD:AF:DP	0/1:79,16:0.17:95
chr7	142458906	rs374242167	T	G	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.043;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=6.446;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-7.616;QD=4.98;ReadPosRankSum=2.449;SOR=1.831;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr7	142458910	rs368381895	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.203;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.663;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-6.780;QD=5.32;ReadPosRankSum=2.053;SOR=1.520;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr7	142458929	rs371622191	G	C	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.970;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=18.223;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-4.706;QD=8.24;ReadPosRankSum=0.976;SOR=4.393;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr7	142458938	rs374770738	T	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.725;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=12.656;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-3.720;QD=9.81;ReadPosRankSum=-0.516;SOR=3.121;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr7	142458967	rs367567937	A	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=7.228;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-2.972;QD=9.66;ReadPosRankSum=-0.644;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr7	142458972	rs371766102	T	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-3.247;QD=8.79;ReadPosRankSum=0.124;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr7	142458987	rs375094420	C	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-2.109;QD=11.91;ReadPosRankSum=-0.864;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	142460313	rs6666	T	C	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:377,208:0.36:585
chr7	142460335	rs201550522	A	G	10838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.538;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-5.522;QD=21.55;ReadPosRankSum=2.520;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:179,324:0.64:503
chr7	142460339	rs200973660	G	A	2209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-0.593;QD=4.58;ReadPosRankSum=1.876;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:341,142:0.29:483
chr7	142460369	rs201719096	G	A	5838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=16.352;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-5.712;QD=16.68;ReadPosRankSum=5.382;SOR=1.328;set=HC	GT:AD:AF:DP	0/1:175,175:0.50:350
chr7	142460374	rs200070487	A	G	2159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=8.293;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-3.587;QD=6.10;ReadPosRankSum=2.816;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:279,75:0.21:354
chr7	142460379	.	C	T	2094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DP=338;ExcessHet=3.0103;FS=7.675;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-3.632;QD=6.29;ReadPosRankSum=1.211;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:263,70:0.21:333
chr7	142460388	rs1804561	C	T	1834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=12.676;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-3.527;QD=6.00;ReadPosRankSum=-1.580;SOR=1.448;set=HC	GT:AD:AF:DP	0/1:248,58:0.19:306
chr7	142460394	rs377124851	T	C	1528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=12.363;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-4.993;QD=5.62;ReadPosRankSum=-3.303;SOR=1.485;set=HC	GT:AD:AF:DP	0/1:222,50:0.18:272
chr7	142460412	.	A	C	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.033;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=51.501;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-13.954;QD=2.82;ReadPosRankSum=-2.315;SOR=3.537;set=HC	GT:AD:AF:DP	0/1:278,32:0.10:310
chr7	142460415	.	T	C	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.325;ClippingRankSum=0.000;DP=316;ExcessHet=3.0103;FS=46.658;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-15.234;QD=1.38;ReadPosRankSum=-3.048;SOR=3.323;set=HC	GT:AD:AF:DP	0/1:286,29:0.09:315
chr7	142460569	rs377684105	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=12.919;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-6.887;QD=0.75;ReadPosRankSum=0.332;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:44,5:0.10:49
chr7	142460669	.	C	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-6.662;QD=1.08;ReadPosRankSum=-0.708;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:41,5:0.11:46
chr7	142460671	rs377695327	A	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-6.885;QD=1.44;ReadPosRankSum=-0.315;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:44,5:0.10:49
chr7	142460690	.	C	CTCTT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-4.817;QD=1.76;ReadPosRankSum=-1.293;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:68,9:0.12:77
chr7	142460865	rs6667	T	C	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	142468205	.	A	C	3312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.649;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-13.458;QD=12.94;ReadPosRankSum=4.423;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:164,92:0.36:256
chr7	142468206	.	G	C	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-9.695;QD=3.06;ReadPosRankSum=3.326;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:222,36:0.14:258
chr7	142468213	.	A	G	3258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.313;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-14.016;QD=11.89;ReadPosRankSum=4.447;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:183,91:0.33:274
chr7	142468218	.	G	A	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.624;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-8.878;QD=4.79;ReadPosRankSum=3.385;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:258,55:0.18:313
chr7	142468221	.	T	A	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.047;ClippingRankSum=0.000;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-9.147;QD=4.54;ReadPosRankSum=2.915;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:265,56:0.17:321
chr7	142468228	.	A	G	3220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.255;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-15.920;QD=9.47;ReadPosRankSum=2.667;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:246,94:0.28:340
chr7	142468232	.	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.535;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=5.225;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-12.200;QD=1.83;ReadPosRankSum=0.777;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:304,38:0.11:342
chr7	142468241	.	C	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DP=365;ExcessHet=3.0103;FS=6.416;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-12.482;QD=1.57;ReadPosRankSum=-0.777;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:326,37:0.10:363
chr7	142468244	.	G	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=6.228;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-12.979;QD=1.58;ReadPosRankSum=-2.283;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:327,39:0.11:366
chr7	142470290	rs11769872	T	C	1481.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.610;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.90;ReadPosRankSum=-1.191;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr7	142470364	rs11770572	T	C	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	142470544	rs377545759	C	T	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=9.197;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-5.947;QD=2.07;ReadPosRankSum=-3.368;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:236,54:0.19:290
chr7	142470582	rs374775884	T	C	10822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.909;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=7.118;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-10.226;QD=17.51;ReadPosRankSum=0.570;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:340,278:0.45:618
chr7	142470585	.	G	A	3840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;ClippingRankSum=0.000;DP=656;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-3.524;QD=5.94;ReadPosRankSum=1.427;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:526,121:0.19:647
chr7	142470597	.	G	A	13389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.728;ClippingRankSum=0.000;DP=867;ExcessHet=3.0103;FS=5.038;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-11.202;QD=15.61;ReadPosRankSum=3.578;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:476,382:0.45:858
chr7	142470607	.	A	T	4401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.735;ClippingRankSum=0.000;DP=999;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-3.153;QD=4.45;ReadPosRankSum=5.270;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:826,164:0.17:990
chr7	142470612	rs367807406	A	G	4287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.059;ClippingRankSum=0.000;DB;DP=1042;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-3.295;QD=4.15;ReadPosRankSum=5.670;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:866,167:0.16:1033
chr7	142470614	.	C	T	4286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.971;ClippingRankSum=0.000;DP=1071;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-3.362;QD=4.04;ReadPosRankSum=6.128;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:895,167:0.16:1062
chr7	142470645	rs368963025	T	C	13728.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.793;ClippingRankSum=0.000;DB;DP=1370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-15.393;QD=10.10;ReadPosRankSum=-0.014;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:876,483:0.36:1359
chr7	142470646	rs375588069	T	C	2938.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.808;ClippingRankSum=0.000;DB;DP=1371;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-14.761;QD=2.16;ReadPosRankSum=2.989;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:1074,286:0.21:1360
chr7	142470683	.	C	CCT	3005.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=0.000;DP=1215;ExcessHet=3.0103;FS=14.516;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-18.785;QD=2.64;ReadPosRankSum=-9.947;SOR=2.072;set=HC	GT:AD:AF:DP	0/1:986,152:0.13:1138
chr7	142470685	.	ATG	A	2984.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.368;ClippingRankSum=0.000;DP=1147;ExcessHet=3.0103;FS=15.364;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-19.330;QD=2.62;ReadPosRankSum=-10.922;SOR=2.124;set=HC	GT:AD:AF:DP	0/1:996,145:0.13:1141
chr7	142470691	rs10952531	G	C	20748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-12.947;ClippingRankSum=0.000;DB;DP=1081;ExcessHet=3.0103;FS=11.367;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=20.085;QD=19.27;ReadPosRankSum=11.850;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:126,951:0.88:1077
chr7	142470693	.	T	C	2339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.107;ClippingRankSum=0.000;DP=1045;ExcessHet=3.0103;FS=13.328;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-23.088;QD=2.25;ReadPosRankSum=-9.326;SOR=2.292;set=HC	GT:AD:AF:DP	0/1:946,95:0.09:1041
chr7	142470821	rs371709048	C	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-7.800;QD=1.68;ReadPosRankSum=2.311;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:74,12:0.14:86
chr7	142478608	rs73742439	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	142478755	rs73742441	T	C	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	142478771	rs201689354	A	AC	7703.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	142478865	.	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-9.625;QD=0.50;ReadPosRankSum=-5.628;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:429,64:0.13:493
chr7	142478881	.	T	TAG	2277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DP=625;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-9.576;QD=3.67;ReadPosRankSum=-2.809;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:528,92:0.15:620
chr7	142478897	rs73742442	T	C	22156.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.518;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;MQRankSum=1.626;QD=28.33;ReadPosRankSum=1.362;SOR=0.062;set=HC	GT:AD:AF:DP	1/1:3,779:1.00:782
chr7	142478905	.	C	T	4181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DP=830;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-15.040;QD=5.09;ReadPosRankSum=1.658;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:675,147:0.18:822
chr7	142478913	.	C	T	4448.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.476;ClippingRankSum=0.000;DP=835;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-15.793;QD=5.38;ReadPosRankSum=2.259;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:673,154:0.19:827
chr7	142478914	.	C	A	4560.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.014;ClippingRankSum=0.000;DP=833;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-15.639;QD=5.53;ReadPosRankSum=2.802;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:669,156:0.19:825
chr7	142479912	rs200484890	C	G	2313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=3.855;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-4.705;QD=8.26;ReadPosRankSum=-1.303;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:208,72:0.26:280
chr7	142479915	rs377017470	T	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=5.393;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-6.020;QD=0.23;ReadPosRankSum=-3.430;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:250,36:0.13:286
chr7	142479917	rs369591097	C	T	2310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=3.845;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-4.749;QD=8.17;ReadPosRankSum=-2.542;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:212,71:0.25:283
chr7	142479940	rs58649169	C	T	6822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=5.906;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=5.427;QD=23.94;ReadPosRankSum=-0.360;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:63,222:0.78:285
chr7	142479954	rs201779716	C	T	2664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-7.589;QD=9.59;ReadPosRankSum=0.160;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:186,92:0.33:278
chr7	142480002	rs199512312	C	A	7191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.941;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=8.125;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-9.836;QD=18.58;ReadPosRankSum=4.503;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:188,199:0.51:387
chr7	142480012	rs56146961	C	T	7846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.186;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=3.213;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=10.021;QD=19.47;ReadPosRankSum=-5.385;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:201,202:0.50:403
chr7	142480034	rs10808019	C	A	7461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.358;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=9.741;QD=18.84;ReadPosRankSum=-1.436;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:198,198:0.50:396
chr7	142480067	rs201659809	C	T	2377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-11.928;QD=8.62;ReadPosRankSum=-4.466;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:154,122:0.44:276
chr7	142480079	rs371397657	T	G	3169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-13.248;QD=13.60;ReadPosRankSum=-4.249;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:143,90:0.39:233
chr7	142480083	.	A	C	3055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-13.922;QD=13.46;ReadPosRankSum=-4.428;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:144,83:0.37:227
chr7	142480095	rs374574556	G	A	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.800;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-13.105;QD=5.72;ReadPosRankSum=-5.127;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:127,57:0.31:184
chr7	142480137	rs57353422	A	G	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;QD=41.98;SOR=1.644;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	142480141	rs55775033	C	G	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=45.83;SOR=1.850;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	142480148	rs10808021	G	C	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.08;QD=46.38;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	142481113	.	G	T	3323.77	.	AC=2;AF=1.00;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	142481234	rs57725689	T	C	26566.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;MQRankSum=-0.320;QD=26.89;ReadPosRankSum=0.978;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:2,986:1.00:988
chr7	142481239	rs199829700	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;ClippingRankSum=0.000;DB;DP=1017;ExcessHet=3.0103;FS=4.717;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-26.145;QD=0.06;ReadPosRankSum=-3.548;SOR=1.458;set=HC	GT:AD:AF:DP	0/1:956,57:0.06:1013
chr7	142481251	rs200856228	A	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.417;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-25.638;QD=0.49;ReadPosRankSum=-5.359;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:1013,103:0.09:1116
chr7	142481376	rs73740310	T	A	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=27.61;SOR=1.640;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	142481807	rs4726591	C	T	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	142481867	rs59320698	C	G	8241.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr7	142482184	rs73740312	A	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	142494606	rs2071361	C	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	142495126	rs12532977	GG	AT	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	142495308	rs56352733	G	A	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	142498687	rs1799887	T	C	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	142498699	.	A	G	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.931;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.692;QD=6.85;ReadPosRankSum=-1.675;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:154,43:0.22:197
chr7	142498702	.	C	T	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.047;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.704;QD=6.69;ReadPosRankSum=-1.008;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:159,44:0.22:203
chr7	142498705	.	ATT	A	1412.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.773;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.779;QD=6.51;ReadPosRankSum=-0.353;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:172,45:0.21:217
chr7	142498708	.	A	ACC	1412.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.116;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.727;QD=6.42;ReadPosRankSum=-0.425;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:173,47:0.21:220
chr7	142498735	rs377360215	A	C	5169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.852;QD=13.19;ReadPosRankSum=-1.465;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:247,145:0.37:392
chr7	142498738	rs370415932	C	G	5335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.790;QD=13.11;ReadPosRankSum=-1.616;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:250,157:0.39:407
chr7	142498813	rs1042955	G	A	6289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-4.330;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:274,306:0.53:580
chr7	142498833	.	A	T	9675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DP=553;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=1.586;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:288,256:0.47:544
chr7	142498837	rs1042957	C	T	9637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=1.418;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:293,253:0.46:546
chr7	142498897	rs1042959	A	G	5612.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:388,294:0.43:682
chr7	142499071	rs1042960	T	C	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	142499729	rs3114480	T	C	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	142499762	rs706	A	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	142500409	rs11327	T	G	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	142510309	rs17269	A	G	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	142583330	rs17881456	A	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	142749823	rs201116298	G	A	9125.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr7	142836203	rs73170678	A	T	10942.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr7	142881540	rs4726600	G	A	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	143017807	rs10282312	G	T	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	143028536	rs2242493	G	A	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	143029371	rs2367941	G	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	143029983	rs7794560	T	C	7227.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	143042837	rs2272251	C	T	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	143053723	rs17854363	C	T	8274.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr7	143054309	rs4236482	G	A	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	143054585	rs6958357	A	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	143078928	rs10808025	C	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	143079806	rs6464546	G	A	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	143088823	rs1804527	T	C	10046.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.827;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.99;ReadPosRankSum=0.439;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:3,399:0.99:402
chr7	143088867	rs6967117	T	C	6284.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	143093538	rs10952549	G	A	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	143097100	rs4725617	A	G	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	143140416	rs58270521	C	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	143141475	rs4595035	T	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	143632265	rs2240358	A	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	143632618	rs2240359	C	T	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	143633297	rs984764	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	143657427	rs2072164	C	T	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	143657473	rs2072165	A	G	6764.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr7	143657801	rs2072166	A	G	7771.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr7	143701516	rs7787378	C	T	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	143701884	rs728275	C	T	7330.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	143747481	rs79781351	AC	A	4574.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	143748364	rs4407791	T	C	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr7	143748520	rs1919969	T	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	143771408	rs59319753	G	C	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	143771536	rs6951485	G	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	143771557	rs61731397	T	C	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	143771937	rs2961135	G	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	143807515	rs2961149	T	G	14606.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.39;QD=45.22;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr7	143807518	rs2951315	T	C	14661.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.42;QD=44.43;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr7	143807674	rs2961150	T	C	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	143826603	rs2961160	G	T	6065.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=26.15;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	143826697	rs2961161	C	G	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	143826729	rs66549240	ACTT	A	4236.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	143827198	rs34308692	CT	C	435.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr7	143839408	rs1919954	C	T	8052.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=-0.084;QD=25.16;ReadPosRankSum=2.245;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:2,318:0.99:320
chr7	143839605	rs1919953	T	C	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:3,100:0.97:103
chr7	143955741	rs199831033	A	G	79.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	143982618	rs201930242	T	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:115,69:0.38:184
chr7	143982776	rs199949243	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:56,46:0.45:102
chr7	144015434	rs141871720	A	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.15;QD=44.53;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	144015437	rs150229766	C	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.25;QD=42.52;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	144068163	rs146660641	T	C	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.20;QD=26.78;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	144068214	rs376311961	T	C	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=48.03;MQRankSum=-3.734;QD=7.87;ReadPosRankSum=-0.608;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:64,48:0.43:112
chr7	144095600	rs2699503	A	G	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	144095730	rs11979528	C	T	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	144096456	rs11769787	C	T	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	144096598	rs11769847	C	T	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	144096839	rs757388	A	G	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	144098896	rs727712	T	C	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	144098992	rs727714	G	A	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	144100874	rs375024030	ACGGGC	A	4371.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	144228295	rs34346934	G	GA	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=0.460;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr7	144532718	rs200964758	T	TA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=1.521;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr7	144532829	rs111798915	A	AG	743.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	144703163	rs35986454	T	G	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	145691987	.	CTCTTCT	C	494.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.92;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	145692010	.	C	A	477.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=3.096;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.54;ReadPosRankSum=2.330;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr7	147259105	rs4425670	G	A	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	147259374	rs2074715	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	147335933	rs72463606	CT	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.212;QD=3.02;ReadPosRankSum=-1.285;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr7	147674912	rs2373284	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	147926888	rs3779032	A	C	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	147963983	rs10248273	G	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	148106465	.	C	CTCTT	1569	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=1;HapScore=1;MGOF=12;MMLQ=27;MQ=60.0;NF=14;NR=13;PP=1569;QD=58.962962963;SC=TGACACTTGACTCTTTCTTTC;SbPval=0.43;Source=Platypus;TC=39;TCF=22;TCR=17;TR=27;WE=148106498;WS=148106455;set=Platypus	GT:AD:AF:DP	1/1:12,27:0.69:39
chr7	148106475	rs72268642	C	CTT	3534.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.10;ReadPosRankSum=-1.260;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:3,83:0.97:86
chr7	148106477	.	C	G	1385	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=2;HapScore=1;MGOF=12;MMLQ=26;MQ=60.0;NF=48;NR=24;PP=1385;QD=19.7190446187;SC=CTTTCTTTCTCTACAGCCAGT;SbPval=0.55;Source=Platypus;TC=72;TCF=48;TCR=24;TR=72;WE=148106498;WS=148106455;set=Platypus	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	148106477	.	C	CTG	5593.73	.	AC=2;AF=1.00;AN=2;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.85;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	148106490	rs9648691	G	A	6731.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	148143136	rs2530301	A	G	8519.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr7	148311115	rs11434056	G	GT	1438.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	148312382	rs6962115	T	G	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	148312520	rs6962292	T	C	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	148463860	rs1014095	T	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	148464675	rs6956231	T	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	148483760	rs2072406	G	A	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	148487329	rs933436	G	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	148487395	rs2007404	T	C	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	148496619	rs34059323	G	A	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	148504716	rs3217095	AG	A	2217.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	148504854	rs55877618	A	AGACTT	3045.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	148506064	rs740949	A	G	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	148508833	rs2072407	A	G	3729.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.54;ReadPosRankSum=-1.351;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:2,150:0.99:152
chr7	148543525	rs10274535	A	G	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	148543693	rs3214332	TA	T	1478.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:5,82:0.94:87
chr7	148705221	rs2306172	A	G	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	148778355	rs34939910	C	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	148801091	rs11525060	G	A	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr7	148801658	rs1137432	C	T	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr7	148809451	rs6464938	T	C	2822.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.150;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.92;ReadPosRankSum=2.391;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:2,116:0.98:118
chr7	148823366	rs10251621	A	G	8694.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.522;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=3.650;MLEAC=2;MLEAF=1.000;MQ=59.81;MQRankSum=-0.125;QD=25.88;ReadPosRankSum=-0.388;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:1,335:1.00:336
chr7	148848257	rs917122	T	C	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	148848358	rs917123	G	A	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	148851213	rs917124	G	A	6178.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	148863414	rs71990250	CAGCTCCA	C	5769.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	148873497	rs1568944	T	A	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	148875632	rs1202461	T	A	179.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	148903984	rs12537763	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	148904293	rs147860582	C	CAAGGTTCTTCATAAG	980.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	148904343	rs6464946	A	T	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.85;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	148904624	rs7784122	C	T	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	148907849	rs10952805	G	A	9191.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr7	148909687	rs1202425	C	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	148936762	rs111428978	A	ACGG	2786.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:6,118:0.95:124
chr7	148937136	rs1202427	C	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	148947698	rs4725801	A	G	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	148979401	rs3735314	C	A	7096.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.474;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=3.711;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=0.965;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:1,274:1.00:275
chr7	148991712	rs13236978	A	G	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr7	149129422	rs71532779	G	A	8487.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr7	149148319	rs4727071	T	C	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	149152770	rs3735319	A	G	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	149152906	rs3735318	G	A	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	149172719	.	G	C	191.80	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	149174265	rs4725816	G	A	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	149256086	rs1978186	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	149317216	rs354056	A	G	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.34;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	149420820	rs11462346	C	CT	3668.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=31.36;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	149426305	rs11424737	G	GC	3799.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	149427409	rs709065	T	G	10395.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr7	149462642	rs61742446	G	T	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	149476666	rs57553723	G	GC	4152.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	149484798	rs62490656	C	T	4819.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr7	149486574	rs855694	G	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	149499284	rs56163742	C	T	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	149500472	rs10952229	A	G	5398.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr7	149500992	rs4725830	A	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	149506211	rs71194663	G	GC	7563.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.59;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	149511985	rs10952230	A	G	6894.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:1,261:1.00:262
chr7	149512331	rs191157638	C	G	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	149523674	rs117730436	C	T	7733.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr7	149530894	rs6960187	G	A	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr7	149543219	rs139634052	CT	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.924;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:143,40:0.22:183
chr7	149544681	rs200471293	GGTGT	G	442.37	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:1,12:0.92:13
chr7	149588429	rs4725317	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	149589343	rs2626759	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.17;QD=26.40;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	149589496	rs11428600	A	AC	4307.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.75;MQRankSum=5.290;QD=31.67;ReadPosRankSum=-0.310;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:8,128:0.94:136
chr7	149589599	rs4725318	C	A	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	150093701	rs940453	A	C	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	150094851	rs13225910	A	G	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	150095271	rs7393	T	C	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	150269087	rs13242186	G	C	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	150269542	rs2293172	G	T	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	150327234	rs71893458	CAA	C	247.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.696;QD=17.70;ReadPosRankSum=-1.097;SOR=0.591;set=HC	GT:AD:AF:DP	1/1:3,11:0.79:14
chr7	150384048	.	A	AAAAG	527.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.140;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.76;MQRankSum=-0.000;QD=32.98;ReadPosRankSum=1.593;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr7	150384193	.	CGT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=-0.000;QD=5.58;ReadPosRankSum=-0.622;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr7	150389593	rs1860871	T	C	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	150389856	rs2075078	A	G	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	150416050	rs72264755	GGTGGTTATGCCTATTT	G	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	150418045	rs2286900	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	150437927	rs9657894	C	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	150438089	rs4725936	T	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	150438161	rs9657898	T	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	150439500	rs759011	C	T	9143.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr7	150440043	rs1046355	C	T	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr7	150440243	rs10361	G	C	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	150446692	rs9969243	C	T	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	150446936	rs2058447	A	G	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	150447027	rs28505524	T	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	150491995	.	CCA	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=5.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.976;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr7	150498836	rs2075079	C	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	150499164	.	T	TTTCTCTTCTC	931.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=42.35;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	150499267	rs12668797	C	A	5578.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.565;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.135;QD=25.36;ReadPosRankSum=1.281;SOR=0.322;set=HC	GT:AD:AF:DP	1/1:1,219:1.00:220
chr7	150500356	rs741068	T	C	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	150500455	rs741067	A	G	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	150500527	rs117401275	C	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	150500729	rs741064	A	G	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	150501455	rs10378	G	T	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	150501516	rs9088	A	G	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	150555810	rs45455308	G	A	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	150556002	rs1049748	T	C	6379.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	150556055	rs6943147	CG	GC	9389.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr7	150556803	rs55671932	A	G	1037.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.94;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	150557390	rs45615934	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	150654622	rs11462566	A	AG	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	150672162	rs11410979	T	TC	299.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	150695726	rs1549758	T	C	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	150696008	rs1007311	A	G	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	150696111	rs1799983	T	G	10730.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.993;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.98;ReadPosRankSum=1.215;SOR=0.565;set=HC	GT:AD:AF:DP	1/1:1,466:1.00:467
chr7	150698879	rs1800780	A	G	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	150703915	rs2853796	G	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	150706383	rs753482	C	A	9083.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,359:1.00:359
chr7	150706436	rs142498418	G	GC	2520.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.32;SOR=2.690;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	150707488	rs743507	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	150708089	rs891512	A	G	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	150708850	rs2256314	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	150709571	rs7830	G	T	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	150713636	rs3800787	G	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	150713902	rs11393607	G	GC	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	150715817	rs1835428	A	G	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	150720902	rs13307588	A	G	20268.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,794:1.00:794
chr7	150747746	rs2288645	A	G	15431.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,608:1.00:608
chr7	150748771	rs58134191	T	C	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	150751590	rs2069459	C	A	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	150752066	rs891507	T	C	15885.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.30;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,628:1.00:628
chr7	150759219	rs3217354	CGTGTGTGAGT	C	774.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	150761150	rs6464122	C	G	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	150761548	rs2303930	A	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	150763655	rs2229549	T	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	150765065	rs2229550	T	C	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	150783756	.	TGCC	T	1791.73	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=42.66;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	150783900	.	C	CG	861.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.09;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	150783903	.	T	G	915.77	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.79;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	150783906	.	C	G	1006.77	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.34;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	150783908	.	C	CG	1087.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.29;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	150783911	.	A	G	1141.77	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.57;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	150783917	.	T	G	1321.77	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	150783919	.	GTCT	G	1840.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=63.47;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	150783922	.	T	TGGGG	1750.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=62.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	150825567	rs2288650	C	T	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	150864240	rs13241978	G	C	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=26.18;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	150873608	rs310598	A	G	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	150878260	rs2253592	C	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	150883761	rs2257090	C	T	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr7	150884266	rs34383739	C	CAG	6565.73	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:49,221:0.82:270
chr7	150921296	.	A	AT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-1.812;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:164,41:0.20:205
chr7	150937377	rs61667463	C	CG	1250.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	150939359	rs219227	C	T	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	150939396	rs219228	C	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	150940657	rs122815	T	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	150940867	rs219229	G	A	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	150972189	rs2072298	G	A	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	151049002	rs3838706	A	AAC	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.60;ReadPosRankSum=-0.974;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr7	151105916	rs35783364	T	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	151106066	rs12533730	C	T	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	151106245	rs12533766	C	T	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	151108411	rs917613	T	A	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	151164348	rs17635434	G	A	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	151168415	rs35526149	CAAT	C	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	151168534	rs6956899	G	A	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	151195328	rs11772458	G	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	151216353	rs6948477	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	151254175	rs8961	T	C	5774.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr7	151254445	rs764801	T	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	151254462	rs764800	G	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	151262305	rs2302532	A	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	151292395	rs35348247	A	AT	1347.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	151483445	rs12671980	A	G	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	151504019	rs9648725	T	C	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	151504499	rs10257529	G	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	151668225	rs1919521	A	T	157.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	151680072	rs6960270	T	C	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	151684168	rs4726127	C	A	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	151723022	rs72200904	TGCG	T	2902.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=43.98;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	151818777	rs967093	T	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	151945007	rs137949498	C	T	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-0.314;QD=5.71;ReadPosRankSum=0.006;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:203,103:0.34:306
chr7	151945071	rs150073007	G	GT	3452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=4.517;QD=5.69;ReadPosRankSum=4.235;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:461,146:0.24:607
chr7	151945101	rs3896406	G	C	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.263;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-15.811;QD=1.77;ReadPosRankSum=-4.294;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:559,135:0.19:694
chr7	151945140	rs57648310	C	T	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.00;MQRankSum=-2.199;QD=2.04;ReadPosRankSum=-1.151;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:560,138:0.20:698
chr7	151945167	rs2537264	G	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=2.584;MLEAC=1;MLEAF=0.500;MQ=53.22;MQRankSum=-4.202;QD=1.15;ReadPosRankSum=-1.494;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:480,91:0.16:571
chr7	151945204	rs4024453	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.827;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=57.628;MLEAC=1;MLEAF=0.500;MQ=53.31;MQRankSum=-10.269;QD=1.04;ReadPosRankSum=-0.213;SOR=4.145;set=HC	GT:AD:AF:DP	0/1:247,37:0.13:284
chr7	151949735	rs77652527	T	C	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	151962176	rs62478356	T	A	23556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.668;ClippingRankSum=0.000;DB;DP=2754;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=48.38;MQRankSum=-15.040;QD=8.57;ReadPosRankSum=2.747;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:1459,1290:0.47:2749
chr7	151970775	rs201635031	C	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=56.68;MQRankSum=-16.222;QD=0.37;ReadPosRankSum=2.578;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:528,80:0.13:608
chr7	151970856	rs10454320	T	A	26975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.567;ClippingRankSum=0.000;DB;DP=1538;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=52.16;MQRankSum=-15.532;QD=17.59;ReadPosRankSum=2.363;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:312,1222:0.80:1534
chr7	151970931	rs56850341	G	A	3204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.269;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=57.265;MLEAC=1;MLEAF=0.500;MQ=51.75;MQRankSum=-17.512;QD=7.80;ReadPosRankSum=-5.649;SOR=3.402;set=HC	GT:AD:AF:DP	0/1:270,141:0.34:411
chr7	152055766	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=2.570;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr7	152549107	rs6944646	C	T	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	152550499	rs4726215	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	152550549	rs76636878	G	T	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	154461112	rs3807218	A	G	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	154461248	rs72056937	TTG	T	1074.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.365;QD=28.28;ReadPosRankSum=-1.399;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr7	154564677	rs11291131	CA	C	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.556;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.938;QD=5.67;ReadPosRankSum=-0.465;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr7	154587494	.	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.28;ReadPosRankSum=1.558;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:102,20:0.16:122
chr7	154672551	rs4960632	G	C	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	154672646	rs3817522	T	C	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	154672679	rs3817520	A	T	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	154672717	rs3817519	G	A	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	154672839	rs3817517	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	154679447	rs940378	G	A	9657.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr7	154684153	rs3734960	T	C	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	154720259	rs11543936	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	154735950	rs930436	C	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	154738409	rs3501	T	C	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	154748908	rs3817480	G	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	154751774	rs2272174	G	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	154759671	rs893942	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	154760369	rs935037	A	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	154760666	rs61752011	C	T	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	154785362	rs306281	A	G	8540.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr7	154790308	.	G	C	1227.77	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	154862188	rs3823534	A	G	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	154862508	rs3734967	A	G	7477.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,293:0.99:295
chr7	154862591	rs1800883	G	C	24122.77	.	AC=2;AF=1.00;AN=2;DB;DP=948;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,924:1.00:924
chr7	154863467	rs2241859	G	T	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	154875780	rs1730208	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	154876342	rs980442	T	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	155094593	rs11772189	G	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	155095686	.	CTTT	C	464.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=2.503;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:5,25:0.83:30
chr7	155099855	rs9769506	C	A	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	155251183	rs77846527	G	A	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	155255010	rs117472001	T	C	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	155255332	rs2361689	T	C	8696.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.96;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr7	155295804	.	G	GA	605.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DP=375;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.809;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:239,81:0.25:320
chr7	155295854	rs7804744	G	A	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	155437475	rs7786826	T	C	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	155437725	rs117348825	C	T	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	155465422	rs7811556	C	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	155503844	rs200646328	G	GT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.210;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:110,24:0.18:134
chr7	155503920	rs7800753	A	T	8252.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr7	155595470	rs112020900	A	ATTATTC	1240.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	155747865	rs7798508	C	G	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	155747907	rs7810074	T	C	8222.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr7	155749929	rs115808529	G	A	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr7	155749951	rs35655547	C	T	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr7	155750033	rs10256182	A	G	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	155755826	rs2007015	A	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	155757502	rs1551630	T	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	156473779	rs71838136	T	TA	439.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.516;QD=15.70;ReadPosRankSum=1.422;SOR=0.656;set=HC	GT:AD:AF:DP	1/1:3,25:0.89:28
chr7	156685519	rs200299453	G	GC	1408.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	156685545	rs200101319	A	AC	2578.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.85;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	156801687	rs151220659	G	T	8854.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr7	156802643	.	A	AGCGGCGGCG	376.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.19;QD=47.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	156932094	rs200844106	G	GGGACTCGGGGTT	4438.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.64;QD=37.62;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	156967831	rs56852731	C	CT	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=9.55;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	157049530	rs1182373	T	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	157208617	rs1009135	C	T	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	157261127	rs34002063	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	157261201	rs4716743	T	G	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	157261258	rs4716744	C	T	12664.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr7	157261275	rs4716745	C	T	16097.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr7	157261292	rs4716746	A	G	17281.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.95;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr7	157261945	rs2109830	A	G	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	157261953	rs11449038	C	CG	2932.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	157262170	rs7801907	T	C	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	157262226	rs7778458	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	157262920	rs7806450	T	C	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	157263015	rs7784276	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=43.77;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	157263025	rs7783247	GA	CG	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=43.77;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	157263050	rs7802789	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.23;QD=43.59;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	157263532	rs7785035	C	T	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	157318438	.	G	C	375	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5033;HP=1;HapScore=2;MGOF=37;MMLQ=24;MQ=56.94;NF=11;NR=9;PP=375;QD=20.4885606274;SC=GCCGTGTGCAGTGTCGCAGGG;SbPval=0.42;Source=Platypus;TC=28;TCF=17;TCR=11;TR=20;WE=157318446;WS=157318428;set=Platypus	GT:AD:AF:DP	1/0:8,20:0.71:28
chr7	157333542	rs1124400	C	T	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	157361564	rs7789467	C	T	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	157361734	rs221294	T	C	10490.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr7	157367205	rs146248159	T	TGA	1488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.964;QD=23.63;ReadPosRankSum=-2.322;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:9,54:0.86:63
chr7	157369564	rs221301	C	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	157370645	rs736940	G	A	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	157370688	rs122004	C	G	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	157370955	.	C	G	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=4.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-0.690;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:52,39:0.43:91
chr7	157396697	rs17853260	G	A	9952.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr7	157406819	rs10247739	A	C	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	157414064	rs1130502	G	A	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr7	157800838	rs143545915	AGT	A	2242.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.265;QD=24.38;ReadPosRankSum=-0.027;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:2,90:0.98:92
chr7	157800899	rs12666418	C	T	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=25.01;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	157873975	rs3800863	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	157903478	rs3800861	A	G	13659.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,537:1.00:537
chr7	157926743	.	AC	GA	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.258;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:225,38:0.14:263
chr7	157929223	rs3800858	G	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=27.72;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	157929246	rs3839696	G	GA	3306.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=24.86;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	157930974	rs3752366	C	T	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	157930979	rs3752367	C	G	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	157931119	rs1130500	A	G	8279.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	157931144	rs1130499	C	T	8439.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	157931263	rs3752371	G	C	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	157959620	rs10277232	C	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	157959636	rs1130498	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	157959879	rs1130497	C	T	7173.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	157959895	rs1130496	C	T	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	157959911	rs1130495	A	G	8611.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	158055802	.	ACAC	A	7816.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.36;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	158055806	.	TGCACACAC	T	7819.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.73;SOR=1.289;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	158055850	rs77811094	TCA	T	18129.73	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=41.02;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr7	158526975	rs76883081	G	A	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	158527051	rs3750052	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	158528158	rs3816461	C	G	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	158528170	rs7787974	G	A	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	158528233	rs3816462	A	G	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	158528254	rs34974906	G	A	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	158528269	rs35914882	C	G	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	158528357	rs35865957	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	158528443	rs3816463	T	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	158529560	rs6961811	C	T	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	158529704	rs6960873	G	A	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr7	158529889	rs2305467	T	G	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	158531641	rs7803766	G	A	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	158531692	rs7804970	C	T	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	158531888	rs7780879	G	A	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.28;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	158531893	rs7800556	A	G	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.13;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	158534372	rs57686648	G	A	15666.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr7	158534381	rs59980573	G	C	15858.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr7	158534690	rs34849374	CTT	C	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	158534707	rs35420830	T	A	176.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.07;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	158536154	rs2305472	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	158536267	rs2305473	T	C	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	158536345	rs2305475	A	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	158536376	rs2305476	A	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	158536388	rs2305477	A	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	158536402	rs71547563	C	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	158536408	rs71547564	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	158536411	rs71547565	T	C	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	158536422	rs71547566	C	G	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.50;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	158536429	rs61362305	A	G	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	158536465	rs66795622	T	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	158552072	rs34089418	CAAG	C	534.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	158552398	rs896860	C	T	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	158555706	rs844521	C	T	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	158566138	rs842447	T	C	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	158566217	rs842448	C	T	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	158586138	rs2602552	T	C	260.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	158586250	.	G	A	3124.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.426;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=3.581;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.04;ReadPosRankSum=-0.580;SOR=0.660;set=HC	GT:AD:AF:DP	1/1:1,129:0.99:130
chr7	158590512	rs2788501	T	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	158590547	rs11404991	G	GA,GAA	562.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=6.338;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-0.312;SOR=0.148;set=HC	GT:AD:AF:DP	1/2:11,19,15:0.42,0.33:45
chr7	158590740	rs13233513	A	T	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	158591589	rs13222407	G	C	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	158591851	rs2709855	C	T	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	158621637	rs4599756	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	158649260	rs2657386	C	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	158649280	rs2788473	T	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	158649304	rs2788472	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	158649373	rs2657385	A	G	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.25;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	158662182	rs842695	G	A	5052.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	158662250	rs712199	T	C	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	158662511	rs3057377	T	TTTTAAAC	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.14;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	158662689	rs2308132	CTT	C	4033.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	158662698	rs842696	T	C	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	158664074	rs145233696	TGAA	T	3688.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=43.91;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	158672476	rs2709859	C	G	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	158672619	rs2788478	A	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	158694530	rs842703	T	C	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	158718793	rs2527188	A	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	158718805	rs2527189	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	158827401	rs1017033	A	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	158829285	rs2730223	T	C	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	158835631	rs2540353	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	158851234	rs2098349	T	G	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	158851804	rs2730257	C	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	158935333	rs439204	G	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	182934	rs75792622	T	C	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.89;QD=27.06;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	182949	rs3008280	C	A	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.73;QD=26.82;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	194596	rs149135623	C	CT	1534.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:6,76:0.93:82
chr8	194884	rs2906331	C	T	253.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	195254	rs2074718	C	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	196274	rs2072174	T	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	250368	rs2544291	A	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.12;QD=52.65;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	250372	rs2544290	G	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.64;QD=36.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	261128	rs11986765	C	T	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	261261	rs11988210	A	G	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=25.80;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	280186	rs60321665	A	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	280241	rs7388619	A	G	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	280468	rs6984826	T	A	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	280729	rs6996051	G	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	280782	rs6985334	T	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	281022	rs11997640	A	G	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	281092	rs62484708	A	C	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	565232	rs1669694	C	G	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr8	566417	rs13276545	C	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	566429	rs13255197	A	C	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	566432	rs13276566	C	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	566460	rs13276586	C	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	566615	rs181124600	G	C	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	566619	rs68122960	A	G	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.19;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	577101	rs336433	A	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	577249	rs12547464	G	C	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	607380	rs1669658	A	G	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	607766	rs4735812	C	G	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	608034	rs10090260	T	C	6772.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	608279	rs1703925	A	G	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	609779	.	TGC	T	4746.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=42.76;ReadPosRankSum=-0.259;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:1,110:0.99:111
chr8	609782	.	ACTGACCATCCTGGGGAGGGGGTGACCATCGAGATCTCCGGTGTGCACTGACCATCCTGGGGAGGGGGTGACCATCGAGATCTCCAGTGTG	A	4847.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=9.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=40.06;ReadPosRankSum=-0.545;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,114:0.94:121
chr8	609787	.	C	G	420	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=3;MGOF=24;MMLQ=25;MQ=42.76;NF=12;NR=4;PP=420;QD=28.4232007842;SC=TGTGCACTGACCATCCTGGGG;SbPval=0.54;Source=Platypus;TC=17;TCF=13;TCR=4;TR=16;WE=609795;WS=609765;set=Platypus	GT:AD:AF:DP	1/1:1,16:0.94:17
chr8	609872	.	G	A	1875	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=1;MGOF=24;MMLQ=25;MQ=57.94;NF=54;NR=39;PP=1875;QD=20.5351743285;SC=TCTCCAGTGTGCACTGAATAT;SbPval=0.55;Source=Platypus;TC=93;TCF=54;TCR=39;TR=93;WE=609880;WS=609862;set=Platypus	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	609901	rs62486244	A	G	7646.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:6,234:0.97:240
chr8	610137	.	GGG	AGT	886	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=27;MQ=59.92;NF=5;NR=14;PP=886;QD=49.4456776243;SC=GCCCCTGCCCGGGGTCATGGC;SbPval=0.52;Source=Platypus;TC=20;TCF=5;TCR=15;TR=19;WE=610147;WS=610127;set=Platypus	GT:AD:AF:DP	1/1:1,19:0.95:20
chr8	623156	rs6559065	G	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	623696	rs61741834	G	A	24081.77	.	AC=2;AF=1.00;AN=2;DB;DP=945;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,936:1.00:936
chr8	1496767	rs2906568	C	G	13881.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.66;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr8	1496788	rs2906569	A	G	15411.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.88;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr8	1514009	rs2301963	C	A	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	1616640	rs4565482	G	A	9944.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr8	1645536	rs2293909	T	C	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr8	1749388	rs7017381	C	T	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	1749410	rs7003112	T	A	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	1749513	rs12541297	C	T	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	1791433	rs11136431	C	T	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	1791638	rs11136432	T	G	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	1791663	rs11136433	G	A	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.48;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	1791672	rs11136434	C	T	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.58;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	1791685	rs11136435	A	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	1806036	rs66620071	AGATC	A	40.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.19;QD=20.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	1806333	rs56203106	A	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:21,22:0.51:43
chr8	1814588	rs67268874	GACAC	G,GAC	978.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=28.79;SOR=0.826;set=HC	GT:AD:AF:DP	1/2:0,12,22:0.35,0.65:34
chr8	1900855	rs7832438	A	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	1901110	rs74808197	G	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	1901177	rs80299596	A	G	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	1905132	rs3735876	G	A	7419.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr8	2005414	rs7833424	C	T	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	2005676	rs3765208	A	G	6854.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	2005883	rs17064618	C	T	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	2007116	rs7461903	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	2007163	rs2294055	C	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	2007230	rs6558591	A	C	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	2020366	rs13251504	A	C	260.78	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=28.98;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	2020377	rs150521018	G	GATGCTCTCTGCCCTTCGGCCATGAAAGCCTCCATCGTTTC	2148.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=134.30;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	2024207	rs7822836	A	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	2024405	rs3817698	G	A	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	2024437	rs3817699	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.11;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	2024446	rs3817700	CG	TA	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	2027633	rs1440291	C	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	2033641	rs62478375	T	C	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	2040298	rs2235122	C	T	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	2040337	rs6420202	T	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	2044363	rs7834633	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	2044376	rs7815778	GG	AC	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	2044426	rs7820357	C	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	2046526	rs7817175	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	2046880	rs2294067	G	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	2048640	rs3779838	C	A	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	2048811	rs4876227	A	C	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	2050383	rs2294070	A	T	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	2054012	rs12677887	C	T	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	2054476	rs33927116	GA	G	191.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	2056569	rs1978898	C	T	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	2057090	rs2280895	C	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	2071002	rs6558607	T	C	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	2071261	rs71270475	A	AGAC	6006.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	2071306	rs6998711	A	G	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=41.28;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	2071309	rs6998712	A	T	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=50.06;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	2071673	rs2280898	T	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	2148408	rs114021924	G	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	2148429	rs2618847	T	A	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	2148429	.	TGC	AGT	345	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=2;MGOF=52;MMLQ=26;MQ=60.0;NF=13;NR=8;PP=345;QD=18.9746607077;SC=TGTGTGTGCATGCGTGTGTGC;SbPval=0.51;Source=Platypus;TC=22;TCF=14;TCR=8;TR=21;WE=2148439;WS=2148419;set=Platypus	GT:AD:AF:DP	1/1:1,21:0.95:22
chr8	2148431	rs2618846	C	T	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	2148550	rs2618845	G	A	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	2148566	rs116420410	G	A	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	2148587	rs138518302	TATGTGTGTACATATGTAC	T	2250.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	2796277	rs585000	C	T	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	2799981	rs6997981	G	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	2806920	rs5741961	G	GAAAGAAAAGA	2253.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=44.19;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	2808860	rs1513337	T	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	2813083	rs4875856	G	C	6123.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr8	2832139	rs667595	C	G	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	2836102	rs615578	C	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	2909992	rs6558702	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	2910020	rs6558703	A	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	2910223	rs6420209	C	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	2910289	rs7004774	A	G	171.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	2954348	rs3112	C	A	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	2964206	rs4875742	T	C	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	2965122	rs113534820	C	CTGTTTT	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	2965209	rs1531351	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	2966072	rs3802291	G	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	2967639	rs898512	G	T	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	2975905	rs2045638	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	3038525	rs259859	T	A	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	3059365	rs5888954	TA	T	122.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	3072322	rs17079629	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	3141555	rs10099968	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	3141586	rs4875508	T	A	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	3165207	rs10103770	A	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	3165471	rs10089504	C	A	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.42;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	3165478	rs10089513	C	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	3165777	rs10091831	G	A	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	3165814	rs1393843	A	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	3201012	rs156075	C	T	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	3201034	rs156076	G	T	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	3216948	rs34858861	TA	T	198.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.044;QD=7.64;ReadPosRankSum=0.611;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr8	3224825	rs35870800	CG	C	1310.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	3224829	rs34455214	G	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	3226919	rs270096	C	T	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	3253768	rs3802303	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	3253939	rs3802304	A	G	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	3253942	rs3802305	A	G	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	3253997	rs3802306	G	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	3263758	rs12543118	A	G	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	3265590	rs10088378	C	T	7432.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr8	3265845	rs11775235	C	T	83.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	3351264	rs9314495	G	A	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	3443799	rs5888973	GA	G	807.25	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:8,52:0.87:60
chr8	3474342	rs2291221	C	T	5649.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	3566106	rs10105577	T	C	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	3566161	rs10105599	T	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	3807319	rs2740867	C	G	126.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	3807528	rs6984912	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	3807553	rs11786061	G	A	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	3855369	rs11303985	GA	G	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	4494811	rs2617007	T	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	4495107	rs2617008	G	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	4495166	rs374775478	ATTTTTTTTTTTTTTTTTTTTTT	A	573.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	4495189	.	T	G	617.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.32;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	4495209	rs62486733	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	6264130	rs2305023	G	C	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	6264358	.	CCTCCCCCGCTGCCTGTCCCACCAAAACCCCCTGCTCCTGCTCT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-4.168;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr8	6264378	.	A	C	284	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=5;HapScore=2;MGOF=26;MMLQ=27;MQ=60.0;NF=4;NR=10;PP=284;QD=22.7693723248;SC=TGCCTGTCCCACCAAAACCCC;SbPval=0.43;Source=Platypus;TC=17;TCF=4;TCR=13;TR=14;WE=6264386;WS=6264368;set=Platypus	GT:AD:AF:DP	1/1:3,14:0.82:17
chr8	6272185	rs2440437	G	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	6272399	rs2305022	G	T	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	6272477	rs2515415	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.15;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	6272481	rs2442545	C	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	6272532	rs2515417	T	A	95.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	6272540	rs3214738	TG	T	86.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	6272543	rs55687318	A	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	6288879	rs2251956	A	T	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	6296550	rs2442513	G	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	6299532	rs2053618	A	G	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	6299559	rs140161935	C	A	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	6302183	rs930557	G	C	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	6302418	rs2515569	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	6312880	rs2515575	C	T	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	6335072	rs41311412	T	G	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	6357307	rs2916715	T	C	167.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	6371114	rs13278243	A	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	6371129	rs13277236	C	T	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.03;QD=43.75;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	6371133	rs35473795	C	T	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=43.33;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	6372033	rs2916736	T	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	6372112	rs2916735	G	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	6372172	rs2979671	T	C	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	6377433	rs1961222	C	T	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	6378763	rs3020221	C	T	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	6389889	rs6559167	C	A	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr8	6390079	rs2515482	G	A	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	6420534	rs3739391	A	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	6588392	rs59149072	A	AT	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-1.029;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr8	6673377	rs11338621	CA	C	16513.73	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr8	6686679	rs62498864	T	C	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	6686721	rs9692693	C	G	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	6728198	rs1047031	C	T	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	6735300	rs2293958	T	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	6735399	rs11362	C	T	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	6735423	rs1800972	C	G	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	6793540	rs736227	C	T	6157.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	6794114	rs2741680	G	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	6913125	rs45613133	C	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	7308386	rs1042797	T	C	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	7308729	rs2294141	G	C	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr8	7308798	rs4840280	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	7320265	rs138861652	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.26;MQRankSum=0.573;QD=16.18;ReadPosRankSum=-0.536;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr8	7343806	rs148956195	C	G	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.85;MQRankSum=0.557;QD=15.25;ReadPosRankSum=0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr8	7686323	rs201085281	G	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.58;QD=22.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	7694034	rs202183310	A	G	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=17.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	7718187	rs3177011	T	G	5428.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.26;MQRankSum=3.106;QD=23.92;ReadPosRankSum=5.089;SOR=0.459;set=HC	GT:AD:AF:DP	1/1:5,222:0.98:227
chr8	7718266	rs3860876	A	T	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.10;QD=26.64;SOR=1.480;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	8197249	rs6998115	G	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	8197274	rs11325094	GA	G	68.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.77;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	8235578	.	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	8643582	rs2271340	C	G	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	8643725	rs2271341	T	A	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	8655023	rs3748144	C	T	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	8747894	rs429433	A	G	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	8860620	rs2288672	T	C	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	8865442	rs371036540	ATCCTTTTTTTTTTT	A	916.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=11.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.26;SOR=2.368;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr8	8887542	rs140242735	TAAC	T	6848.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	8905786	rs11433078	G	GT	58	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	8905926	rs2921379	A	G	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	9537635	rs12114182	G	A	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	9563797	rs11343041	CT	C	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.778;QD=8.36;ReadPosRankSum=-0.132;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr8	9564437	rs7006985	A	G	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr8	9577794	rs72301704	A	AT	578.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	9577804	rs5025210	C	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	9577940	rs6601360	T	C	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	9593081	rs4841208	A	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	10102863	rs4841293	A	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	10210990	rs111889058	ACCGGAGGC	A	978.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	10285810	rs3750314	T	C	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	10285825	rs10903326	T	G	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr8	10383226	rs4521726	C	G	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	10411438	rs35201635	AT	A	981.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,53:0.96:55
chr8	10464307	rs12542104	G	A	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	10464755	rs55642448	C	T	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	10464885	rs56382513	T	C	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	10465748	rs11783478	T	C	31688.73	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:0,742:1.00:742
chr8	10465771	rs11785822	G	T	32392.77	.	AC=2;AF=1.00;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	1/1:0,774:1.00:774
chr8	10465942	rs28446662	T	A	8992.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr8	10467124	rs4841399	G	C	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr8	10467207	rs4840498	C	A	5323.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr8	10467575	.	C	A	130.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=0.560;QD=6.54;ReadPosRankSum=1.334;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chr8	10467576	rs4840499	T	C	130.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=11.996;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.962;QD=6.23;ReadPosRankSum=-1.706;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr8	10467652	rs4840501	G	C	2228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=747;ExcessHet=3.0103;FS=83.391;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=2.222;QD=13.03;ReadPosRankSum=-7.636;SOR=0.004;set=HC	GT:AD:AF:DP	0/1:58,113:0.66:171
chr8	10467663	.	C	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.864;ClippingRankSum=0.000;DP=713;ExcessHet=3.0103;FS=43.953;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=1.120;QD=4.91;ReadPosRankSum=5.324;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:108,27:0.20:135
chr8	10468172	rs4840502	G	A	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr8	10469292	rs62490857	C	T	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	10469817	rs6996950	G	A	9160.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr8	10470668	.	G	A	11549.77	.	AC=2;AF=1.00;AN=2;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,446:1.00:446
chr8	10470915	rs11773913	A	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	10470941	rs4840503	C	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	10530218	rs11250058	C	T	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	10531087	rs10216539	A	G	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	10532355	rs4841419	T	C	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	10532401	rs4840505	A	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	10583203	rs10110624	A	G	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	10583506	rs4841432	A	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	10584212	rs10100209	C	T	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	10584288	rs10100333	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	10622812	rs12750	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	10689212	rs12375394	C	T	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	10691277	rs11986043	A	C	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	10691318	rs11986845	T	C	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	10691489	rs11996727	C	T	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	10692158	rs2271355	C	T	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr8	10692359	rs1549796	C	T	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	10692362	rs138828851	CTT	C	6585.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	10782442	rs4841459	A	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	10920326	rs6601555	C	T	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	11058892	.	CGG	C,CG	3993.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=3.802;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.412;QD=23.91;ReadPosRankSum=0.541;SOR=0.580;set=HC	GT:AD:AF:DP	1/2:6,39,122:0.23,0.73:167
chr8	11105077	rs2572431	C	T	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	11105304	rs2572430	T	G	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	11142389	rs3021505	C	CG	3088.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	11142625	rs2272594	T	C	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	11152957	rs2245937	C	T	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	11157371	rs2736387	A	C	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	11162602	rs2256016	C	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	11301753	rs3021513	A	C	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	11400628	rs12386974	C	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	11405437	rs6994605	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	11405576	rs55758736	G	A	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	11406408	rs76578315	G	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	11406593	rs3816668	T	C	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr8	11410987	rs936550	C	A	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	11411005	rs11250146	G	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	11414013	rs11250147	G	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	11414237	rs2306234	T	C	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr8	11416122	rs2467518	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	11417493	rs10098664	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	11418385	rs2898289	G	A	9504.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:2,377:0.99:379
chr8	11418773	rs4841561	C	T	5390.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr8	11421321	rs13248757	T	C	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	11421358	rs10097005	C	A	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	11421384	rs10097015	C	T	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr8	11421793	rs1042689	C	T	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	11422082	.	T	C	12952.77	.	AC=2;AF=1.00;AN=2;DP=503;set=Intersection	GT:AD:AF:DP	1/1:1,494:1.00:495
chr8	11618998	rs804285	G	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	11619261	rs2740431	T	A	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr8	11619397	rs36018280	G	A	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	11629119	rs804269	T	C	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	11629241	rs804267	G	A	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	11640611	rs8191639	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	11660051	rs2645429	A	G	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	11660916	rs2252567	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	11665959	rs1032577	C	T	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	11666218	rs71711801	GTCCCAC	G	18913.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=861;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;MQRankSum=1.169;QD=24.37;ReadPosRankSum=-1.188;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:14,762:0.98:776
chr8	11666337	rs4731	A	G	21026.77	.	AC=2;AF=1.00;AN=2;DB;DP=837;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=25.90;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,812:1.00:812
chr8	11666451	rs1616534	C	T	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	11683653	rs904011	T	C	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	11687938	rs1293313	G	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	11689228	rs2409836	T	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	11695872	rs10903343	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	11702542	rs8898	T	C	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	11831948	rs7461062	T	C	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	11832079	rs10108075	A	G	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	11853596	rs11250186	A	G	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	11872723	rs11784716	A	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	12584628	.	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=2.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.48;ReadPosRankSum=1.094;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	12584659	rs10095845	C	T	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	12592956	rs13251315	C	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=25.59;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	12593045	rs13272425	A	G	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	12598608	rs4831354	C	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	12600622	rs7837242	C	T	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	12848359	rs77826707	A	G	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	12870160	rs2460338	G	C	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	12878637	rs528255	A	G	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	12878677	rs622106	T	C	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	12878807	rs3739310	T	G	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	12879062	rs503550	T	C	7171.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	12879099	rs502882	G	A	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr8	12879334	rs608909	T	C	6910.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.024;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr8	12879539	rs608052	A	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	12879600	rs498852	C	T	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	12888908	rs7826836	T	G	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr8	12888997	rs573652	T	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	12950088	rs34094992	CCT	C	1061.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	12952116	rs965672	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.68;QD=24.09;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	12952174	rs5889417	CA	C	773.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.99;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	12956698	rs76713924	T	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	12958025	rs3739298	C	A	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	13072177	rs3739300	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	13258936	rs289583	T	A	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	13356424	rs3736135	G	T	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	13356802	rs3816747	G	A	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr8	13356818	rs11203494	TT	CG	9487.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	13357587	rs1383942	G	A	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	13424583	rs13273355	C	T	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	13425353	rs11203497	T	A	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	13959749	rs1973167	A	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=23.32;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	13965581	rs11336839	AT	A	1059.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	14022296	rs6993740	A	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	14095250	rs1478030	A	T	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	15531381	rs17474327	T	G	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	15556360	rs5889594	A	AT,ATT	1729.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.62;ReadPosRankSum=-0.089;SOR=0.990;set=HC	GT:AD:AF:DP	1/2:4,19,57:0.24,0.71:80
chr8	15590866	rs2111752	T	G	75.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	15606182	rs7820648	G	A	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	15978063	rs4338104	C	T	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr8	16007691	rs56287808	G	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.36;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	16850498	rs1721100	C	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:72,51:0.41:123
chr8	16859398	rs10448135	C	G	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	17042129	rs75130109	C	CCT	1550.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	17063335	rs2904674	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	17068013	rs1548350	T	G	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,72:0.55:131
chr8	17074640	rs3213600	C	G	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.643;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:39,48:0.55:87
chr8	17089788	rs77250415	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr8	17092164	rs2959606	G	T	16809.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,658:1.00:658
chr8	17100357	rs2904701	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	17100456	rs150002154	G	GA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.626;QD=1.53;ReadPosRankSum=-0.039;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr8	17105771	rs2959614	T	C	85.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.90;QD=17.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	17137413	rs17587086	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	17157259	rs6992513	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17157786	rs13257763	T	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	17159812	rs6587028	G	A	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	17159960	rs7007043	T	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	17166765	rs1548353	A	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	17170645	rs4921749	T	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	17170687	rs10113185	T	C	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	17188895	rs7841726	T	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	17230644	rs7388581	G	C	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	17270640	rs13268193	A	C	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	17270787	rs67972978	A	G	10343.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.985;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=0.847;SOR=0.352;set=HC	GT:AD:AF:DP	1/1:1,402:1.00:403
chr8	17401364	rs368416506	CCTT	C	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	17401878	rs2517252	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	17406183	rs737039	A	G	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	17406367	rs11373918	GT	G	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr8	17419539	rs62622371	G	A	9941.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr8	17419689	.	ATTTTTTTTTTTTTTTTTT	A,AT	1350.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=6.021;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=37.52;ReadPosRankSum=1.626;SOR=2.304;set=HC	GT:AD:AF:DP	1/2:1,17,18:0.47,0.50:36
chr8	17421279	rs2588173	T	C	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	17486282	rs2229084	T	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	17507299	rs17590021	A	G	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	17532573	rs2269698	T	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	17532619	rs2269699	C	T	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	17533568	rs2301541	A	T	218.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17533633	rs2301542	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	17539225	rs17633543	T	C	8008.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr8	17579135	rs6982255	C	T	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	17611886	rs2979788	G	A	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr8	17612043	rs61733694	G	A	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr8	17612456	rs11203910	C	T	7868.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	17612875	rs3739407	A	G	6854.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr8	17726019	rs10112643	A	G	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	17732084	rs2517294	GC	CA	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	17739538	rs3739406	T	C	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr8	17742929	rs2073562	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	17743020	rs484373	G	A	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr8	17743256	rs369898	G	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	17753657	rs500282	G	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	17753873	rs3896063	C	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	17796382	rs412750	AC	GT	9660.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	17797409	rs2285303	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	17804665	rs28655174	G	A	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	17814680	rs11777618	G	C	171.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17814915	rs208753	A	G	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	17819572	rs3780103	C	T	6342.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr8	17819761	rs208060	A	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	17827260	rs3214087	A	AC	2393.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	17829756	rs34990698	C	CAA	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	17830005	rs17514547	G	A	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	17851248	rs429633	C	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	17868029	rs2467556	C	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	17868245	rs2467555	C	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	17871598	rs13266287	T	A	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	17885091	rs3213605	T	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17891259	rs17635795	C	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	17916224	rs420610	A	C	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	17916553	rs7465164	C	T	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=25.37;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	17916598	rs33985304	CT	C	788.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	17918934	rs10103355	A	G	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	17920807	rs7824644	A	G	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr8	17921858	rs77940935	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr8	17921921	rs2073574	T	C	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	17924609	.	T	TGCACCTGTGCTGTATATCTAAGACATACA	353.74	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=58.96;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	17927184	rs2427746	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	17927248	rs4921567	A	C	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	17927280	rs2106037	G	T	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	17927294	rs4921834	C	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	17927327	rs1049874	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	17928762	rs138422571	T	TATA	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	17928811	rs1071645	C	T	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	17928920	rs12547845	T	C	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	17928999	rs12549594	G	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	17930605	rs6586686	A	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	17930727	rs6586687	G	A	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	17930734	rs7461977	C	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	17930772	rs3753115	C	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	18074536	rs7387461	G	A	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	18077007	rs10106882	G	C	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	18257854	rs1801280	T	C	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	18257994	rs1799929	C	T	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	18393159	rs5889802	C	CT	40	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.00;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	18413875	rs2260920	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	18415081	rs2634454	G	T	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	18432578	rs2248559	C	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	18457957	rs2932001	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.86;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	18632327	rs7822288	G	A	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	18632333	rs7841096	A	T	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	18656601	rs2248631	G	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	18658929	rs1386691	C	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	18659765	rs2638646	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	18659928	rs2632847	A	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	18660007	rs2638647	A	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	18661932	rs60951997	TAA	T,TA	484.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=24;set=Intersection	GT:AF:DP	1/1:0.79:24
chr8	18666210	rs2638653	G	A	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	18729817	rs7016219	GT	AG	2640.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=0.604;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:2,102:0.98:104
chr8	18793697	rs10092681	T	A	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	19252189	rs1344254	G	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	19277735	rs7016592	A	G	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	19277817	rs6999786	G	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	19297583	rs13278459	A	G	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	19315034	rs10888163	G	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	19362768	rs7017776	C	T	5757.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	19456473	rs4244454	C	T	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	19674954	.	T	TGGCGGC	1703.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.380;QD=16.38;ReadPosRankSum=2.187;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:60,44:0.42:104
chr8	19680736	rs12547934	T	C	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	19680979	rs4464983	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	19681647	rs2410612	G	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	19682545	rs3816246	A	G	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr8	19682592	rs7018076	A	G	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	19689633	rs4434638	T	C	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	19689821	rs4615593	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	19699191	rs34564004	G	T	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr8	19699236	rs35843228	T	A	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:65,57:0.47:122
chr8	20004641	rs6586896	T	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	20005554	rs17092104	G	C	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	20005716	rs903997	G	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	20007111	.	CT	C	55.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.400;QD=0.60;ReadPosRankSum=-0.858;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:82,11:0.12:93
chr8	20007112	rs71510684	T	C	1711.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-0.355;QD=18.61;ReadPosRankSum=1.150;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:12,80:0.87:92
chr8	20008155	rs17092107	C	T	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	20022486	rs17092126	T	A	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:204,161:0.44:365
chr8	20028474	rs7841346	C	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr8	20028553	rs7828538	T	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr8	20035809	rs1532446	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr8	20036018	rs28491510	GA	TG	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.780;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-1.422;QD=14.15;ReadPosRankSum=0.435;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:44,45:0.51:89
chr8	20036043	rs1908809	C	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr8	20036095	rs2279708	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr8	20036521	rs1390937	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr8	20036713	rs1390938	A	G	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	20036827	rs2270637	C	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:72,58:0.45:130
chr8	20061469	rs1497024	G	C	6064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.723;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-2.246;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:287,313:0.52:600
chr8	20066877	rs78680143	A	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr8	20068163	rs7460146	T	G	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	20069789	rs10156354	G	C	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:158,121:0.43:279
chr8	20082778	rs200076001	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=1.985;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr8	20107143	rs904003	A	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	21550768	rs15881	A	C	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	21550800	rs1128397	A	T	7435.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr8	21767493	rs368685616	AT	A	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.774;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:53,37:0.41:90
chr8	21771309	rs35282792	CT	C	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-1.233;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr8	21827880	rs370595398	AAC	A	1002.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	21842023	rs1872220	TT	GA	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	21890581	rs1947985	T	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	21891939	rs10089142	G	A	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	21891968	rs4871915	C	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	21895146	rs11992609	A	G	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	21904212	rs1078363	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	21924297	rs9657287	C	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	21924743	rs11135821	G	A	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	21924778	rs11135822	T	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	21924944	rs11135823	A	G	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	21925214	rs6997244	C	G	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	21927137	rs12680100	G	A	12586.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr8	21927211	rs12681799	C	G	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	21927460	rs7386762	C	G	10492.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr8	21930007	rs3824334	G	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	21930068	rs3824336	A	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	21931141	.	CAAAAAA	C,CA	1891.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.89;QD=34.40;SOR=1.075;set=HC	GT:AD:AF:DP	1/2:0,22,33:0.40,0.60:55
chr8	21931170	rs199820139	AAAAAAAAAAGAG	A	3625.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.14;QD=42.66;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	21937667	rs6557781	T	C	10299.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,407:1.00:407
chr8	21937870	rs7835670	G	A	6265.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr8	21939435	rs6557782	C	T	16281.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,609:1.00:609
chr8	21946664	rs7829160	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	21952226	rs1456	T	C	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	21955116	rs11352	C	T	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	21956108	rs35497596	A	G	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	21958333	rs1552283	T	C	15879.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,586:1.00:586
chr8	21958831	rs1968870	C	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	21958843	rs71544853	C	CTCTT	1523.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	21959191	rs6557810	A	G	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr8	21959877	rs7812435	T	G	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	21960096	rs117802113	C	T	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr8	21964802	rs1552286	C	T	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	21966700	rs57316099	GC	G	3652.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	21966707	rs58343576	CG	C	3686.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	21966891	rs149177341	C	CCCGCTCCCAGTCCCTGCGGAGA	1247.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.87;QD=47.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	21967075	rs7830885	G	T	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	21967304	rs7844781	C	T	16361.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr8	21967309	rs7817171	A	C	16322.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr8	21973970	rs6557829	C	A	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	21974032	rs6557830	A	C	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.91;SOR=3.370;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	21976872	rs12677278	G	A	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	21978072	rs11135859	A	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	21978088	rs11779694	G	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	21982991	rs74596676	T	C	7880.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=42.14;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr8	21982997	rs56140348	A	G	7331.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=44.43;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr8	21984650	rs12675745	A	G	6969.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.743;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=0.184;SOR=0.238;set=HC	GT:AD:AF:DP	1/1:1,273:1.00:274
chr8	21984765	rs73549523	C	T	8738.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr8	21997738	rs35574275	A	T	7638.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr8	22014075	.	T	G	113.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	22021517	rs1124	G	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	22021739	rs3216166	G	GA	8156.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.58;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	22021883	rs7592	G	A	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	22021934	rs1139547	G	A	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	22059363	rs11996036	G	A	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr8	22059520	rs62494051	A	G	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	22059606	rs13257482	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	22066855	rs4463424	C	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	22069018	rs11778448	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	22079355	rs4872422	A	G	8036.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr8	22081708	rs4075536	G	A	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	22084653	rs4871975	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	22085260	rs10100426	T	C	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	22104691	rs34392777	G	T	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	22105502	rs1126677	T	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	22147333	rs4872463	A	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.94;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	22163331	rs12543697	C	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	22165710	.	G	GT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.25;ReadPosRankSum=0.001;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr8	22167286	rs4486204	A	G	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	22172702	rs4397403	C	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	22173987	.	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.205;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.55;ReadPosRankSum=0.589;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr8	22211756	rs66554545	T	A	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	22385061	rs17733133	T	C	8233.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr8	22396781	rs5890041	TC	T	218.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	22419191	rs2469764	T	C	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	22419555	rs34995301	G	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	22422923	rs960509	G	A	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	22424489	rs11779261	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	22426650	rs3830695	TC	T	11635.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr8	22426859	rs13258049	G	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.11;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	22428658	rs2449331	T	C	39942.77	.	AC=2;AF=1.00;AN=2;DB;DP=1551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,1528:1.00:1528
chr8	22432377	rs710098	C	A	37854.77	.	AC=2;AF=1.00;AN=2;DB;DP=1500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.87;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,1463:1.00:1463
chr8	22436681	rs11545016	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	22437141	rs11786352	G	A	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	22438313	rs922810	T	C	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	22442287	rs4872003	A	G	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	22442661	rs2294047	A	G	11736.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr8	22447426	rs3830696	CGGTCCGGGAG	C	417.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	22457077	rs71502592	C	G	217.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	22457205	rs755934	TT	GC	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	22457388	rs2272718	G	A	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	22460204	rs34268501	A	G	8983.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr8	22462374	rs3735901	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	22463623	rs7843828	C	T	6254.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr8	22463697	rs2291230	C	G	6282.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr8	22464064	rs2291232	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	22464390	rs2291234	T	C	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	22464980	.	G	GTT	216.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=14.45;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	22465385	rs34027561	T	C	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	22465427	rs6999893	T	C	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	22470710	rs1871902	G	A	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	22471824	rs3736147	G	A	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr8	22472051	rs17060939	G	A	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	22472255	rs71299322	C	CTGCTGCCTTCATCCTGATGGGT	6587.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.03;QD=41.96;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	22473158	rs11781149	C	T	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr8	22473465	rs7843128	T	C	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr8	22477131	rs10551411	ACAT	A	8628.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr8	22481449	rs1871900	A	G	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	22482799	rs876714	A	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	22482851	rs900268	A	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	22487388	rs6558170	C	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	22487422	rs6558171	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	22491980	rs17746902	G	T	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	22492052	rs6558172	G	A	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	22492103	rs6558173	G	T	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	22492129	rs6558174	A	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	22502207	rs34656094	CT	C	5340.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr8	22570844	rs3853	G	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	22570907	rs35121552	GT	G	620.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.87;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	22570935	rs1047406	T	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	22571018	rs1047398	A	G	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	22571113	rs2280106	G	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	22584718	rs1129474	T	C	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	22785013	rs1553778	T	C	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	22785047	rs73218763	C	T	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	22785159	rs2175192	G	A	8690.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr8	22863004	rs2430811	A	G	13429.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr8	22863017	rs2466179	G	T	10498.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,404:1.00:405
chr8	22863191	rs2430812	C	T	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	22864622	rs2466178	T	C	32115.77	.	AC=2;AF=1.00;AN=2;DB;DP=1215;set=Intersection	GT:AD:AF:DP	1/1:0,1199:1.00:1199
chr8	22865320	rs2430815	T	G	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr8	22880162	rs1047275	G	C	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	22881852	rs6557609	T	C	17422.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr8	22885109	rs1105944	A	G	6647.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr8	22885153	rs2293402	GG	AA	24969.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr8	22886020	rs13265018	A	G	9014.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:1,352:1.00:353
chr8	22886130	rs2293399	A	G	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr8	22887013	rs6420148	C	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	22888407	rs10866818	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	22926498	rs11135695	G	A	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	22960704	rs6557616	G	C	21808.77	.	AC=2;AF=1.00;AN=2;DB;DP=884;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,862:1.00:862
chr8	22969091	rs10111172	T	C	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	22974325	.	G	A	1642	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=3;HapScore=1;MGOF=5;MMLQ=26;MQ=42.99;NF=28;NR=49;PP=1642;QD=21.7762495136;SC=ACACCAGCCCGGGGACTCCTG;SbPval=0.49;Source=Platypus;TC=79;TCF=28;TCR=51;TR=77;WE=22974333;WS=22974315;set=Platypus	GT:AD:AF:DP	1/1:2,77:0.97:79
chr8	22989735	rs5890091	C	CAA	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.38;ReadPosRankSum=1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr8	22990193	rs36229757	TTGTGTGTG	T,TTG	2359.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.46;SOR=1.262;set=HC	GT:AD:AF:DP	1/2:0,21,42:0.33,0.67:63
chr8	23001988	rs1133782	A	G	9007.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr8	23021256	rs61760054	C	T	9620.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr8	23054779	rs3824218	T	C	11430.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr8	23069574	rs13274366	T	C	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	23104195	rs2294123	G	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	23106665	rs2280934	A	G	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	23113908	rs4439140	G	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	23114203	.	G	GTTTTT	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=-0.184;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr8	23116431	rs4872098	C	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	23116675	rs13260347	A	T	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	23117643	rs2294125	T	C	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	23118155	rs9828	T	C	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	23145320	rs11777755	A	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	23147564	rs3808536	G	A	8062.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr8	23148003	rs4469460	G	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	23148930	rs2272762	A	G	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	23148940	rs2272761	G	A	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.21;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	23149089	rs2272759	A	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	23150671	rs11135720	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	23150772	rs72237352	CTGCT	C	3762.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	23150878	rs13530	T	G	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	23151000	rs3860836	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	23152334	rs15946	A	G	9200.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.169;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=3.022;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.105;QD=25.35;ReadPosRankSum=0.139;SOR=0.241;set=HC	GT:AD:AF:DP	1/1:1,362:1.00:363
chr8	23152410	rs137952235	CTG	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.708;QD=0.50;ReadPosRankSum=0.683;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:93,12:0.11:105
chr8	23153022	rs1002792	T	C	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	23167353	rs1063582	T	G	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr8	23167560	rs12548642	T	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	23174425	rs3824213	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	23174748	rs13250587	A	G	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.83;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	23177619	rs13254579	C	A	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	23186007	rs1051146	T	C	10737.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.869;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=-0.303;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:1,422:1.00:423
chr8	23190941	rs1010156	T	C	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	23226014	rs6999447	C	T	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,69:0.97:71
chr8	23261651	rs6989053	C	A	1295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-2.391;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:149,78:0.34:227
chr8	23282441	rs11276760	GCATTATACAA	G	3117.73	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:153,87:0.36:240
chr8	23290451	rs17089244	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:98,47:0.32:145
chr8	23292044	rs139348326	GCA	G	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.752;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:100,18:0.15:118
chr8	23292985	rs3736652	A	G	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr8	23294428	.	C	T	3798.77	.	AC=1;AF=0.500;AN=2;DP=367;set=Intersection	GT:AD:AF:DP	0/1:170,188:0.53:358
chr8	23301340	rs11787224	A	C	2810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.533;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:155,140:0.47:295
chr8	23302164	rs2272640	A	G	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=0.621;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:19,29:0.60:48
chr8	23307580	rs11777391	G	T	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr8	23423669	rs2942194	A	G	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	23423758	rs10992	G	A	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr8	23432326	rs1398232	T	A	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	23540417	rs11781886	C	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	23560648	rs35373423	G	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	23712066	rs5890129	G	GT	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=4.598;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.654;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:255,62:0.20:317
chr8	24187399	rs11994377	T	A	805.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=-0.038;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,35:0.76:46
chr8	24193264	rs4872222	T	C	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	24208649	rs10092862	C	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	24208847	rs7009516	G	A	7069.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr8	24211278	rs7815643	C	T	5530.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	24211331	rs7814768	G	A	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	24211884	rs10694022	A	ATGTC	1496.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.77;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	24211993	rs10610134	ACTAT	A	4578.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	24333601	rs10100176	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	24339896	rs11348969	GA	G	761.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	24348221	rs1492401	T	A	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	24350188	rs1352952	C	T	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	24359125	.	A	AT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.439;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr8	24363792	rs6982442	G	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	24365157	rs34338646	TCA	T	2933.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	24365181	rs11307556	AT	A	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=1.804;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr8	24774683	rs196864	C	A	6270.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.700;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.170;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=1.440;SOR=0.353;set=HC	GT:AD:AF:DP	1/1:1,248:1.00:249
chr8	24811064	rs11300136	AG	A	3657.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.48;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	25132735	rs4478580	T	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	25156296	rs2956656	T	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	25158026	rs2709639	G	A	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	25158072	rs5890219	AT	A	3522.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.162;QD=20.13;ReadPosRankSum=-1.371;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:2,173:0.99:175
chr8	25159665	rs868335	T	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	25160084	rs2709638	CA	TG	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	25174495	rs2666169	C	T	5815.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr8	25174710	rs2709627	C	T	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	25174723	rs2666168	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	25181356	rs2666174	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr8	25182969	rs2666172	C	T	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	25199152	rs377209689	C	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	25200148	rs10110351	A	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	25202915	rs2468901	A	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	25203022	rs2468902	A	G	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr8	25226261	rs17198394	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	25227229	rs2048083	T	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.88;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	25227234	rs2048082	A	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	25227255	rs2659578	C	T	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	25230168	rs2271108	C	T	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	25230267	rs2271106	T	C	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	25231044	rs12676152	T	G	190.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	25231117	rs3215159	C	CT	904.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	25231385	rs2271105	T	C	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	25234858	rs2659585	A	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	25235055	rs34962551	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	25237801	rs11989035	T	C	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	25237963	rs17053525	A	G	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	25240100	rs7837477	G	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	25246481	rs2709602	G	A	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	25247821	rs113940021	TA	T	1355.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:5,88:0.95:93
chr8	25249545	rs6991928	C	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	25250423	rs6557840	A	G	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	25261281	rs17053612	C	T	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	25280575	.	G	A	127.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	25280666	rs2709608	A	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	25287556	rs965130	A	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	25317691	rs6987936	A	T	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	25323777	rs10108752	T	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	25365278	rs8537	G	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	25708267	rs10866845	T	C	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	25744257	rs6557865	G	A	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	25890478	rs1872497	G	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	26435700	.	C	A	1414.77	.	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	26441275	rs415524	A	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	26441562	rs408753	A	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	26481771	rs327222	T	C	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	26483998	rs58931747	AACACAC	A	401.79	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.640;QD=25.11;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr8	26492470	rs55906521	G	T	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	26513027	.	C	A	1227.77	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	26716472	rs536401	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	26716622	rs489790	G	A	5830.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr8	26716715	rs538378	G	A	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	26906538	rs73564844	T	C	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	27094548	rs10217008	A	G	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	27096610	rs116132487	C	T	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	27096634	rs1542185	C	T	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	27101204	rs4733040	T	A	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	27101206	rs7830662	A	C	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	27147716	rs12386801	A	C	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr8	27204598	rs4534095	A	G	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr8	27204663	rs2874826	A	G	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	27204857	rs4629818	A	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	27255080	rs1128433	A	G	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	27255128	rs1045510	T	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	27255146	rs1045511	G	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	27255263	rs1045512	A	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	27255325	rs2241650	C	T	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	27255368	rs11267627	AGCAGCTCTCCTGCAGCCTC	A	1045.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	27277537	rs1030526	G	A	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	27279705	rs2241652	G	A	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	27291557	rs919493	T	C	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	27292287	rs1896959	A	G	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	27293335	rs11774417	G	T	7478.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr8	27294532	rs2163176	C	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	27294823	rs6996922	T	C	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	27295109	rs2288617	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	27297696	rs2241657	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	27301725	rs1128435	C	G	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	27303126	rs4733064	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	27308585	rs751019	A	C	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	27308961	rs2278319	C	T	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	27310546	rs3735758	A	G	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	27311703	rs1879184	T	C	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	27315726	rs1879183	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	27315876	rs1879182	A	G	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	27315900	rs1879181	A	G	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	27319292	rs735421	A	G	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	27321597	rs3735757	G	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	27324822	rs891398	T	C	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	27326838	rs139680977	AGG	A	5627.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,214:0.99:216
chr8	27328354	rs2472554	G	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	27369334	rs7816586	A	G	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	27436236	rs140683899	GTTTGT	G	1314.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	27456253	rs2279590	T	C	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	27461772	rs3216167	CA	C	1578.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	27462481	rs7982	A	G	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	27467821	rs2070926	C	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	27593650	rs10081527	T	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	27598042	rs34636629	GA	G	1649.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	27598172	rs7842672	A	G	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	27609830	rs4732744	A	G	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	27630231	rs34876489	G	C	98.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	27641609	rs1824449	G	A	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	27645704	rs6558014	C	T	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	27650428	rs4732754	C	T	128.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	27661066	.	T	TACAC	256.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;QD=32.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr8	27661085	rs62498042	G	A	319.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=39.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	27667969	rs2294092	C	G	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	27668726	rs17479454	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	27678341	.	A	ATT	126.73	.	AC=1;AF=0.500;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	27680576	rs727813	G	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	27729406	rs71519658	G	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	27737198	rs4732610	A	G	15769.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.37;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,598:1.00:598
chr8	27743401	rs2726928	T	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	27743535	rs2685381	T	C	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	27762235	rs2726984	T	C	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	27762537	rs939706	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	27764627	rs2726987	T	C	8901.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr8	27767171	rs2726991	G	A	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr8	27767305	rs2726992	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	27767339	rs2726993	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	27779545	rs10103504	C	T	8717.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr8	27779811	rs4732613	C	T	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	27779880	rs61455593	T	TA	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	27779885	rs59195507	T	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	27898452	rs12675621	A	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	27903069	rs13279787	C	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	27915830	rs4336563	T	C	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	27918057	rs7817227	T	C	4819.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	27924924	rs17408912	T	C	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	27925204	rs4732620	T	C	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	27927849	rs6998705	C	G	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	27957529	rs2290370	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	27957556	rs2290369	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	27964056	rs61714722	CAAAAAAAAAAAAAAA	C	608.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.83;QD=40.58;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	27967856	rs3213997	A	G	4620.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.780;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=-0.635;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,180:0.99:181
chr8	28013579	rs4732832	A	C	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	28016002	rs149274779	AAATAAAG	A	1544.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	28210613	rs6558057	G	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	28214096	rs2272749	T	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	28286071	rs11895	T	C	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	28286174	rs1055741	T	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	28286342	rs2270654	G	A	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	28286885	rs57374675	C	T	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr8	28287025	rs12334678	C	T	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	28304769	rs1390963	C	T	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	28568130	rs11446791	C	CT	51.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=-0.732;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr8	28574803	rs240951	G	A	9947.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.77;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,386:1.00:386
chr8	28600572	rs2048369	G	C	7961.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr8	28633124	rs7462400	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	28638577	rs75609888	C	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	28707622	.	GA	G	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=2.455;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr8	28876221	rs7837237	T	C	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.44;SOR=1.281;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	28876230	.	T	G	3861.77	.	AC=2;AF=1.00;AN=2;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.52;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	28900087	rs1948132	T	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	28967679	rs3736225	C	T	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	28979949	rs4732905	C	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	28984042	rs3793435	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	28984572	rs3763566	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	28991405	rs3750265	A	G	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	29005093	rs6986672	A	G	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	29005128	rs13263819	A	G	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	29023421	.	T	TTCGATTGTAGATCGAAGTACC	535.73	.	AC=2;AF=1.00;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	29033422	rs6558098	C	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	29053761	.	TAA	TA,T	1475.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.585;QD=12.00;ReadPosRankSum=-0.370;SOR=0.673;set=HC	GT:AD:AF:DP	1/2:17,77,29:0.63,0.24:123
chr8	29062287	.	C	CA	881.73	.	AC=2;AF=1.00;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	1/1:10,52:0.84:62
chr8	29107388	rs2954794	G	A	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	29923732	rs2271367	G	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	29927300	rs6468093	C	G	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	29927321	rs6468094	A	G	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	29931375	rs986636	T	C	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	29935696	rs71204259	GA	G	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.787;QD=10.84;ReadPosRankSum=1.417;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr8	29940271	rs13279112	A	G	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	29953256	rs56969689	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	29989399	rs13272159	G	A	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	29989564	rs7844812	A	G	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr8	29996158	rs4733141	A	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	29996256	rs7813902	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	30001915	rs12546113	T	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	30013759	rs7012749	A	C	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	30394968	rs2979511	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=-0.586;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr8	30402817	rs2915595	G	A	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr8	30469805	rs7815625	A	C	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.246;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:34,30:0.47:64
chr8	30494374	rs35494159	T	TA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-1.427;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr8	30494772	rs2978266	T	C	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.101;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:103,87:0.46:190
chr8	30537223	rs10715710	CT	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=1.426;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr8	30546636	rs2551715	T	C	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chr8	30567423	.	TA	T	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=9.715;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=4.269;QD=2.92;ReadPosRankSum=0.584;SOR=0.206;set=HC	GT:AD:AF:DP	0/1:91,69:0.43:160
chr8	30569609	.	G	GA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.760;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr8	30584923	rs2251780	G	A	2938.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.869;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.12;ReadPosRankSum=0.248;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:1,116:0.99:117
chr8	30601617	rs73672521	C	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	30608976	rs2911690	C	T	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	30620840	rs11388922	G	GT	2253.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	30620964	rs2956010	T	C	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	30623996	rs2956016	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	30643538	rs3832549	C	CCTAT	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	30695226	rs2720593	C	T	4550.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr8	30717575	rs35279485	TA	T	53.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr8	30916085	rs2737316	T	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	30958353	rs3087419	CT	C	1211.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	30977696	rs4987034	A	G	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	30981971	rs3087417	G	T	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=0.560;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr8	30999122	rs3024239	C	T	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	31005017	rs3087415	T	TC	4554.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.28;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	31024654	rs1346044	T	C	6844.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	32471982	rs199950277	C	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	32579686	rs17669659	G	C	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	33311091	rs7009689	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	33313329	rs2732315	G	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	33313421	rs11337905	GA	G	699.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.487;QD=11.47;ReadPosRankSum=-1.901;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:10,51:0.84:61
chr8	33347907	rs2732274	T	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	33354873	rs11987085	C	A	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	33355886	rs2676419	G	T	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	33356074	rs6468171	A	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	33367302	.	G	A	4039.77	.	AC=2;AF=1.00;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	33369944	rs2304748	T	C	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr8	33369994	rs3098657	A	G	5581.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	33370985	rs2581896	A	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	33371146	rs2581897	T	G	13427.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr8	33371150	rs2581898	A	G	13175.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.75;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr8	33371199	rs2581899	T	C	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	33416189	rs3735950	G	A	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	33416222	rs3735951	C	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	33416303	rs35879627	G	GA	903.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.04;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	35425870	rs2589340	T	A	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	36698552	.	GT	G	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DP=415;ExcessHet=3.0103;FS=2.135;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-2.275;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:156,115:0.42:271
chr8	36776267	rs10108041	T	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr8	36779848	rs60216672	GA	G	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=1.371;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr8	36780209	rs1010669	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.34;ReadPosRankSum=-2.088;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr8	36786396	rs10089755	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr8	36788479	rs16885577	A	G	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.195;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:65,74:0.53:139
chr8	36788693	rs6986249	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:63,41:0.39:104
chr8	36790339	rs2275960	G	A	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:99,137:0.58:236
chr8	36925165	rs11781526	A	G	3564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.478;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:176,182:0.51:358
chr8	37611414	.	C	CT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.172;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=0.860;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:70,15:0.18:85
chr8	37620076	rs6468438	A	G	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	37686749	rs6468442	A	G	4434.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:231,232:0.50:463
chr8	37693302	rs10101560	T	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	37728017	rs7817179	A	G	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=-0.236;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:44,36:0.45:80
chr8	37728019	rs7820872	T	G	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=-0.018;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:44,34:0.44:78
chr8	37730368	rs12541651	G	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:124,76:0.38:200
chr8	37730456	rs7341564	G	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr8	37888017	rs3750243	C	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	37964024	rs112972804	C	CT	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.976;QD=5.58;ReadPosRankSum=1.315;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr8	37985897	rs2843740	A	G	7285.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr8	37986561	rs2517394	G	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	38001675	rs35462433	A	C	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:89,85:0.49:174
chr8	38003787	rs2720050	T	C	26728.77	.	AC=2;AF=1.00;AN=2;DB;DP=1020;set=Intersection	GT:AD:AF:DP	1/1:0,1008:1.00:1008
chr8	38005835	rs2229620	T	C	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:3,280:0.99:283
chr8	38006330	rs35520501	TC	T	9335.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:1,273:1.00:274
chr8	38027519	rs16887236	A	G	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr8	38028726	rs2843739	T	C	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	38029694	rs200558035	AGC	A	205.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.86;ReadPosRankSum=1.016;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr8	38029696	.	C	CAAA	205.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.86;ReadPosRankSum=1.242;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr8	38029708	rs2843738	G	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.68;ReadPosRankSum=1.465;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr8	38091984	.	G	A	2442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=2.534;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:137,127:0.48:264
chr8	38110159	.	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=1.128;QD=2.20;ReadPosRankSum=-0.624;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr8	38121974	.	A	C	2441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-2.201;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:124,126:0.50:250
chr8	38125396	rs3215009	GT	G	2663.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:85,86:0.50:171
chr8	38133475	.	C	G	370.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr8	38133746	.	T	A	226.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr8	38245598	rs35044708	CT	C	2440.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.308;QD=8.30;ReadPosRankSum=-1.131;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:78,216:0.73:294
chr8	38254696	.	C	CT	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-1.029;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr8	38369831	rs4733951	A	C	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	38370200	rs146268311	GAGACACAGAC	G	929.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	38385795	rs2445020	T	C	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	38458552	.	G	GTCT	15427.73	.	AC=2;AF=1.00;AN=2;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr8	38458659	rs327934	C	T	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr8	38458802	rs327935	A	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	38599748	rs78981097	G	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr8	38599893	rs7814409	G	A	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:205,141:0.41:346
chr8	38677322	rs34235313	C	T	6214.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:311,310:0.50:621
chr8	38683082	.	C	CT	55.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.99;ReadPosRankSum=0.619;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr8	38709553	rs1135990	C	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:101,68:0.40:169
chr8	38793682	rs4633027	T	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr8	38808590	rs71517743	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr8	38809663	rs6984871	A	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	38826290	rs6996274	G	A	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	38827185	rs5891050	GC	G	9043.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr8	38835456	rs4733960	T	C	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr8	38835666	rs4733961	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr8	38839302	.	A	AT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=2.435;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.19;ReadPosRankSum=-0.962;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:190,35:0.16:225
chr8	38840591	rs7814264	C	T	4280.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:212,218:0.51:430
chr8	38845602	rs62504414	T	G	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr8	38845638	rs66513029	A	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=2.415;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr8	38845644	rs202203479	T	TAA	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.15;ReadPosRankSum=1.028;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr8	38848850	rs4733895	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr8	38853620	rs6991968	G	A	2767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-0.718;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:121,132:0.52:253
chr8	38853983	rs7840270	C	A	4518.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:200,223:0.53:423
chr8	38872186	rs7833611	C	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr8	38876466	rs6474518	T	C	2447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-0.277;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:78,65:0.45:143
chr8	38876466	.	TCC	CCT	721	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=3;HapScore=1;MGOF=11;MMLQ=26;MQ=60.0;NF=12;NR=15;PP=721;QD=28.6839953653;SC=TTTCTTCTTTTCCATGAAAAG;SbPval=0.33;Source=Platypus;TC=70;TCF=26;TCR=44;TR=27;WE=38876476;WS=38876456;set=Platypus	GT:AD:AF:DP	1/0:43,27:0.39:70
chr8	38876468	rs6474519	C	T	2447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=-1.198;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:75,64:0.46:139
chr8	38884342	rs10652213	G	GTTCT	4207.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:93,113:0.55:206
chr8	38911953	rs9643905	C	A	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:57,57:0.50:114
chr8	38912121	rs59803430	G	GA	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=5.04;ReadPosRankSum=1.599;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:53,49:0.48:102
chr8	38940143	.	AT	A	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=2.607;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:90,36:0.29:126
chr8	38964647	rs4517088	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr8	38965271	rs59118660	C	T	10459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=1086;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=0.397;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:539,529:0.50:1068
chr8	38988463	rs10101239	G	A	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	39022522	rs10088854	G	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	39080632	rs7845771	C	G	7685.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr8	39080824	rs4476978	T	A	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	39311600	rs7813010	C	T	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	39311654	rs62513562	A	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr8	39311677	rs7834545	T	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,27:0.36:76
chr8	39312886	rs10097769	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	39323387	rs7840918	T	C	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:204,183:0.47:387
chr8	39330868	rs7823210	C	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr8	39330885	rs7823217	C	A	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr8	39330916	rs142026482	ATC	A	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=-1.070;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:116,20:0.15:136
chr8	39331010	rs7822450	G	A	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:86,59:0.41:145
chr8	39331043	rs7823494	C	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:82,53:0.39:135
chr8	39331093	rs7845028	T	C	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:72,49:0.40:121
chr8	39331555	rs28634287	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.051;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr8	39331585	rs62510461	G	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.151;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.934;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr8	39332320	rs6997541	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr8	39332884	rs7840611	G	C	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.022;QD=17.77;ReadPosRankSum=-2.148;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr8	39332895	rs199887672	G	GA	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.240;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.791;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr8	39335120	rs7005620	A	T	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:146,95:0.39:241
chr8	39442292	rs7007924	T	G	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr8	39463063	rs4236751	T	C	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	39463196	rs78437504	T	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	39468365	rs191981024	G	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr8	39487022	rs3735881	C	T	4452.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,175:0.99:177
chr8	39521419	rs6988389	T	C	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:55,96:0.64:151
chr8	39607102	rs113780233	G	GCA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=-0.563;QD=1.34;ReadPosRankSum=1.975;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr8	39607105	rs77172402	C	T,CATGT	1421.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.375;QD=31.59;ReadPosRankSum=2.055;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:3,7,35:0.16,0.78:45
chr8	39618637	rs10093751	G	T	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	39618865	rs10097616	C	G	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr8	39644691	rs3779718	C	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.40;ReadPosRankSum=-0.566;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr8	39678723	rs7830439	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr8	39694610	rs13255763	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr8	39694860	rs61429352	C	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr8	39694871	rs11786521	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr8	39776286	.	AAAC	A	262.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.89;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	39777529	rs7820268	C	T	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	39779989	rs10108662	C	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	39780922	rs10593932	CAAA	C	2137.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.364;QD=26.07;ReadPosRankSum=0.000;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:1,81:0.99:82
chr8	39781124	rs148093613	G	T	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:151,129:0.46:280
chr8	39785321	rs3739319	G	A	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:81,87:0.52:168
chr8	39821386	rs2543052	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:70,46:0.40:116
chr8	39842443	rs140841420	C	CTTAT	1265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.10;ReadPosRankSum=1.146;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:27,33:0.55:60
chr8	39843139	rs2729472	A	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.45;ReadPosRankSum=0.550;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr8	39862881	rs10109853	C	T	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.845;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:124,111:0.47:235
chr8	39871036	rs2955897	A	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	39871298	rs5891075	T	TTAA,TTTTAA	2480.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.528;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=33.52;ReadPosRankSum=0.659;SOR=1.979;set=HC	GT:AD:AF:DP	1/2:1,25,48:0.34,0.65:74
chr8	39872668	rs2955902	C	T	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr8	39872676	rs5891076	GA	G	1898.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:9,103:0.92:112
chr8	39872866	rs2981161	A	C	16676.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr8	39873188	rs2981162	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	40011079	rs6474226	G	A	7062.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr8	40389823	rs1429965	C	A	5165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.845;QD=8.67;ReadPosRankSum=-1.530;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:316,280:0.47:596
chr8	40389842	rs1429966	T	C	4382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.848;QD=8.98;ReadPosRankSum=-1.646;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:259,229:0.47:488
chr8	40389933	rs4038741	TAA	T	1638.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;MQ=60.23;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr8	40438757	rs17851751	T	C	5863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-1.728;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:346,307:0.47:653
chr8	40554742	rs11781516	C	T	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:103,82:0.44:185
chr8	40665997	rs1512214	A	G	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	40666094	.	C	CA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=0.45;ReadPosRankSum=1.365;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:237,51:0.18:288
chr8	40666189	rs11777437	T	C	4379.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	40666257	rs11776726	A	C	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	41297486	rs10637700	T	TTTTG	3224.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.283;QD=39.33;ReadPosRankSum=1.185;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:4,78:0.95:82
chr8	41355096	rs17656952	C	T	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=25.29;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr8	41363690	rs111703526	A	AT	98.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	41364486	rs17657160	G	A	6147.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr8	41387921	rs7819949	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	41391588	rs10096250	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	41517860	rs565491	G	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	41517958	rs59908561	A	AG	2179.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	41519248	rs516946	T	C	13410.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr8	41519462	rs515071	A	G	16028.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr8	41521663	rs563118	T	C	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	41529856	rs508112	A	G	9150.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr8	41553928	rs504574	C	G	9765.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr8	41555366	rs559651	T	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	41555373	rs559000	G	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.37;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	41555473	rs2241896	T	C	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:105,121:0.54:226
chr8	41555740	rs492008	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	41573488	rs473235	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	41574736	rs575817	A	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	41615429	rs486223	G	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	41685814	rs12708213	A	C	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=1.102;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:45,47:0.51:92
chr8	41753843	rs77115522	C	G	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:90,114:0.56:204
chr8	41794934	rs13748	C	T	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:195,185:0.49:380
chr8	41798330	rs72640388	G	A	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,57:0.47:122
chr8	41805249	rs10504048	C	T	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:176,146:0.45:322
chr8	41838503	rs11990460	G	A	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:68,56:0.45:124
chr8	42013563	rs150778126	T	TATG	17488.73	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=44.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr8	42026393	rs7016041	T	C	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr8	42129567	rs17875660	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,8:0.18:45
chr8	42147894	rs2294097	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr8	42163669	rs3817717	G	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr8	42164039	rs2294096	G	C	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.643;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr8	42172017	rs7814513	C	G	4865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.003;QD=18.79;ReadPosRankSum=0.950;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:52,207:0.80:259
chr8	42175303	rs2294100	A	T	8467.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:139,389:0.74:528
chr8	42186579	rs2272732	T	C	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:50,127:0.72:177
chr8	42188550	rs1057741	A	G	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr8	42196441	rs3136717	C	T	6134.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:88,261:0.75:349
chr8	42227777	rs34271342	GT	G	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.656;QD=8.28;ReadPosRankSum=1.120;SOR=2.115;set=HC	GT:AD:AF:DP	0/1:12,34:0.74:46
chr8	42227788	.	T	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=11.163;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.447;QD=2.46;ReadPosRankSum=3.182;SOR=2.279;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr8	42229059	rs2307163	G	GT	600.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr8	42231786	rs2073664	G	A	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:85,82:0.49:167
chr8	42232160	rs2073663	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr8	42232489	rs2073665	A	G	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:102,101:0.50:203
chr8	42233448	rs10096210	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:119,54:0.31:173
chr8	42259299	rs3736649	A	G	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:78,76:0.49:154
chr8	42275517	rs12676957	G	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,48:0.49:97
chr8	42295130	.	C	CT	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=1.527;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr8	42404040	rs2974349	C	T	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	42552633	rs4950	G	A	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:146,109:0.43:255
chr8	42587796	rs4954	G	A	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr8	42608199	rs2304297	G	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr8	42614378	rs892413	C	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr8	42693566	rs111989331	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr8	42798394	.	G	GT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.515;QD=1.30;ReadPosRankSum=1.629;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr8	42798658	rs1648120	A	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr8	42865753	rs56065225	A	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	42868455	rs5891200	CT	C	350.19	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:4,28:0.88:32
chr8	42882555	rs111931018	A	ATTTGT	6361.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	42959007	rs5024011	C	A	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr8	43013936	rs10958738	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr8	43054553	rs1126058	T	C	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr8	43155556	rs201743478	CTATGAG	C	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.36;ReadPosRankSum=-1.956;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr8	47759712	rs3849804	T	G	9545.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr8	48320563	rs34569190	AT	A	1661.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.55;ReadPosRankSum=0.682;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:2,83:0.98:85
chr8	48585861	rs17614038	C	A	5589.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:137,255:0.65:392
chr8	48586506	rs17692216	G	C	3995.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:112,192:0.63:304
chr8	48805816	rs11411516	A	AG	16652.73	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=36.60;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr8	48846519	rs1231202	T	C	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	48866788	rs1231203	T	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	48879943	.	C	T	2329.77	.	AC=1;AF=0.500;AN=2;DP=583;set=Intersection	GT:AD:AF:DP	0/1:418,159:0.28:577
chr8	48885436	rs762679	T	A	8082.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr8	49642465	rs74669650	C	A	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr8	49643243	rs966703	A	G	2828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-1.055;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:96,133:0.58:229
chr8	49831217	rs147930178	GGT	G	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=1.937;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:64,11:0.15:75
chr8	49987910	rs6984804	G	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr8	51362462	rs1481475	A	G	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:118,76:0.39:194
chr8	51363078	rs7817955	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr8	51363430	.	A	T	27	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=9;HapScore=2;MGOF=3;MMLQ=26;MQ=60.0;NF=0;NR=3;PP=27;QD=20.5904041824;SC=TGTTCTCTTAATTTTTTTTTA;SbPval=1.0;Source=Platypus;TC=8;TCF=1;TCR=7;TR=3;WE=51363438;WS=51363420;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr8	51415207	rs2623206	C	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr8	51571172	rs1911830	G	A	9578.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr8	51571370	rs1911831	G	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	51617430	rs7003356	T	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	51664541	rs11429292	G	GT	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=1.608;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr8	51664842	rs6473337	C	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr8	51705228	.	C	T	808.77	.	AC=1;AF=0.500;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	0/1:116,50:0.30:166
chr8	52252171	rs11778598	A	G	8506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=2.688;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:242,405:0.63:647
chr8	52252405	rs1437593	T	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr8	52258429	rs11774588	A	T	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:113,183:0.62:296
chr8	52258536	rs10091690	A	G	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:83,155:0.65:238
chr8	52284560	rs117752382	A	T	4688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.474;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:112,223:0.67:335
chr8	52284654	rs5891410	C	CA	178.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr8	52321243	rs2977020	T	C	3469.77	.	AC=1;AF=0.500;AN=2;DB;DP=820;set=Intersection	GT:AD:AF:DP	0/1:590,222:0.27:812
chr8	52325879	rs1560511	T	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:115,50:0.30:165
chr8	52336041	rs2060107	G	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr8	52361772	rs1431636	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=0.403;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr8	52366200	rs6473599	G	A	10789.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr8	52396048	rs1431632	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,18:0.26:69
chr8	52412226	rs755311	G	T	3676.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:496,229:0.32:725
chr8	52567361	rs17277222	A	T	3760.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:93,185:0.67:278
chr8	52721958	rs13252785	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr8	52730441	rs6768	T	C	10004.77	.	AC=1;AF=0.500;AN=2;DB;DP=1535;set=Intersection	GT:AD:AF:DP	0/1:938,566:0.38:1504
chr8	52730521	rs4401853	C	T	16652.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr8	52733050	rs12335014	T	A	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:288,137:0.32:425
chr8	52733128	rs62506083	T	G	2445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.800;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-13.184;QD=7.67;ReadPosRankSum=5.351;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:227,92:0.29:319
chr8	52733148	rs76104220	C	T	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-6.905;QD=0.56;ReadPosRankSum=3.989;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:223,41:0.16:264
chr8	52733340	rs35006940	A	AT	1043.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	52746153	rs9298462	C	T	2327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=0.754;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:287,145:0.34:432
chr8	52811681	rs10106734	A	G	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	52811758	rs13263909	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr8	52858979	rs77831588	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr8	53452359	rs34430102	T	TA	560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=1.400;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:126,62:0.33:188
chr8	53569680	rs62499947	C	T	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:71,111:0.61:182
chr8	53570529	rs12708142	C	A	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	53573024	rs11782948	C	A	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr8	53573288	rs33955860	GA	G	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.891;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr8	53586706	rs17337252	A	G	8741.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:235,422:0.64:657
chr8	53853526	rs79536146	G	A	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:179,101:0.36:280
chr8	54141824	rs963549	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr8	54142154	rs16918875	G	A	6300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.232;QD=9.55;ReadPosRankSum=-0.864;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:471,189:0.29:660
chr8	54142157	rs702764	T	C	6226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.244;QD=9.56;ReadPosRankSum=-0.602;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:466,185:0.28:651
chr8	54147242	rs16918900	C	T	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:176,91:0.34:267
chr8	54155342	rs57560123	G	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:97,40:0.29:137
chr8	54155452	rs113472418	G	A	8175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.022;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:606,238:0.28:844
chr8	54155455	rs12548098	T	C	8126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.355;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:607,240:0.28:847
chr8	54155476	rs16918931	T	C	3426.77	.	AC=1;AF=0.500;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	0/1:613,247:0.29:860
chr8	54163562	rs1051660	C	A	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:119,68:0.36:187
chr8	54859208	.	A	G	5873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DP=446;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=1.040;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:160,285:0.64:445
chr8	54866491	rs6981243	C	A	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	55539395	rs2293869	A	T	8373.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:185,390:0.68:575
chr8	55542540	rs61739567	G	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr8	55586301	.	AAAC	A	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.613;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=3.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.543;SOR=0.182;set=HC	GT:AD:AF:DP	0/1:53,8:0.13:61
chr8	55590975	rs382476	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr8	55592336	rs405226	A	G	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr8	55613902	rs858396	C	T	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	55632762	rs1437782	C	T	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-0.840;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:236,122:0.34:358
chr8	55647367	rs112017805	A	AGT	2907.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:64,105:0.62:169
chr8	55671690	.	C	CTG	166.77	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.05;QD=23.82;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	56048060	rs1480763	T	A	7664.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	56048107	rs1480764	C	T	10726.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr8	56052578	rs62516975	G	T	52.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	56054696	rs11785942	C	T	3466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=846;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.125;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:606,236:0.28:842
chr8	56074325	rs7837220	C	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr8	56076791	rs2291183	G	A	13682.77	.	AC=1;AF=0.500;AN=2;DB;DP=1015;set=Intersection	GT:AD:AF:DP	0/1:367,646:0.64:1013
chr8	56076886	rs2291184	A	G	7911.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:186,370:0.67:556
chr8	56185702	.	CTGTGTGTGTG	C,CTGTG	751	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=26;MQ=60.0;NF=0,0;NR=20,20;PP=751,415;QD=37.7;SC=GAAAAGAGGACTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=31;TCF=0;TCR=31;TR=20,20;WE=56185725;WS=56185692;set=Platypus	GT:AF:DP	0/1:0.65:31
chr8	56637895	rs10098084	T	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr8	56656195	rs7836019	T	C	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr8	56657801	rs4738457	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	56686224	rs1818	T	C	6121.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr8	56792586	rs1050855	G	A	9426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=1401;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-0.680;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:857,535:0.38:1392
chr8	56792685	rs167999	G	A	3215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-0.946;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:374,199:0.35:573
chr8	56911861	rs2175487	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	57125270	rs6474051	T	C	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	57285647	rs10091783	T	G	3113.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:109,155:0.59:264
chr8	57287545	rs11774683	C	T	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr8	57294501	rs10216893	T	C	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:46,79:0.63:125
chr8	57294571	rs10216409	C	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:36,63:0.64:99
chr8	57295200	rs7002482	C	T	6916.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr8	57302927	rs34478796	A	ATT	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-1.332;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:21,39:0.65:60
chr8	57335956	.	C	CT	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.530;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:153,72:0.32:225
chr8	57349380	rs13268089	C	T	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	57349709	rs182120608	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr8	57353826	rs3839874	AG	A	3976.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=32.60;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	57358563	rs3840716	CG	C	9397.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	59345858	rs149543550	CTG	C	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.52;ReadPosRankSum=-1.231;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr8	59347184	rs1993453	A	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	59404346	rs8192878	T	C	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:62,110:0.64:172
chr8	59411042	rs2162459	G	A	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:359,174:0.33:533
chr8	59484899	rs7827910	T	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	59493353	rs74656758	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr8	59494089	rs28656336	G	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr8	59498190	rs12677290	G	A	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	59498614	rs6995115	A	G	9462.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr8	59499237	rs3816846	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr8	59502535	rs3736236	G	A	6068.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:144,288:0.67:432
chr8	59508076	rs16923588	A	G	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr8	59510465	.	AAAAAGACATAC	A	2319.73	.	AC=1;AF=0.500;AN=2;DP=197;set=Intersection	GT:AD:AF:DP	0/1:131,66:0.34:197
chr8	59512334	rs2680903	G	A	19570.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,761:1.00:761
chr8	59515756	rs2255834	G	A	5253.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:105,249:0.70:354
chr8	59518439	.	CA	C	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.395;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:148,52:0.26:200
chr8	59518452	rs77608120	A	G	1173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=2.844;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:163,82:0.33:245
chr8	59520310	rs59269342	A	C	3065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=1.081;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:432,197:0.31:629
chr8	59544187	rs10504257	A	C	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.518;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-1.835;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:37,20:0.35:57
chr8	59720604	rs2726600	G	A	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr8	59764368	rs3837195	CAATA	C	149.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr8	59852168	rs3832587	A	AAC	1378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.77;ReadPosRankSum=1.606;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:20,38:0.66:58
chr8	59872615	rs3780001	T	G	7036.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:195,324:0.62:519
chr8	60031707	.	GA	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.173;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr8	61139280	rs12549573	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr8	61178676	rs5891756	CT	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.975;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=6.458;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.633;QD=2.01;ReadPosRankSum=0.232;SOR=1.760;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr8	61193453	rs7002846	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr8	61193522	rs7002871	A	G	2790.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:256,158:0.38:414
chr8	61193570	rs74792169	C	T	5078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=1.378;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:598,301:0.33:899
chr8	61193760	rs10101374	T	G	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.137;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:248,109:0.31:357
chr8	61193809	rs10086341	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:66,27:0.29:93
chr8	61484493	rs17822578	C	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr8	61484788	rs3735825	C	G	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.37;ReadPosRankSum=-0.879;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr8	61488824	rs2981277	T	C	6830.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:144,328:0.69:472
chr8	61488859	rs2946154	A	G	7897.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:165,369:0.69:534
chr8	61496950	rs3735826	C	T	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr8	61655690	rs7836586	G	A	6412.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr8	61707725	rs4540437	G	A	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr8	61713126	rs5891777	A	ATGGACT	8411.73	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr8	61713231	rs3890803	C	A	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	61714245	rs10448027	A	G	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	61732521	rs6471902	A	G	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.19;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	61734295	rs4509369	A	G	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	61748893	rs7005873	C	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	61750860	rs7844902	A	G	7980.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr8	61764076	rs4342642	A	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	62003453	rs1367972	A	G	2795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.900;QD=5.30;ReadPosRankSum=1.420;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:357,171:0.32:528
chr8	62003547	rs35220668	G	GC	2672.73	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:277,131:0.32:408
chr8	62200770	.	T	A	6828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=1157;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=1.105;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:752,400:0.35:1152
chr8	62371260	rs2291607	C	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	62371281	rs183768360	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr8	62411925	rs71559334	G	GAAAT	8568.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=47.60;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	62416074	rs7005617	G	A	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	62438530	rs4738904	A	G	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	62460886	rs10113272	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.86;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	62460894	rs16927479	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	62475160	rs3802287	A	G	110.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	62475276	rs3802286	C	T	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr8	62475518	rs3824269	G	C	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	62479934	rs10090754	C	T	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.126;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	62496415	rs6471962	C	T	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.10;ReadPosRankSum=-1.494;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr8	62496421	rs35353831	A	AT	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=2.139;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr8	62538944	rs78469859	T	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr8	62545288	rs2882462	C	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	62550936	rs998427	A	C	2467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.172;QD=11.53;ReadPosRankSum=0.872;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:80,134:0.63:214
chr8	62555416	.	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=1.14;ReadPosRankSum=1.504;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr8	62563764	rs7016141	A	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	62593664	rs62505969	T	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr8	62595068	rs3750278	C	T	9139.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr8	62602295	.	C	CA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.468;QD=0.24;ReadPosRankSum=0.041;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:372,74:0.17:446
chr8	62626962	rs3829051	C	T	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.839;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:162,63:0.28:225
chr8	62627004	rs3750279	A	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:82,23:0.22:105
chr8	62627510	rs4272369	C	G	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:119,75:0.39:194
chr8	63161761	rs143223222	T	C	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:237,94:0.28:331
chr8	63257441	rs4442138	T	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	63295978	rs62509214	G	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr8	63296132	rs10808724	T	G	7925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.48;ReadPosRankSum=-0.917;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:109,202:0.65:311
chr8	63296138	rs62509215	A	T	7738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=-0.383;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:109,192:0.64:301
chr8	63502434	rs72423486	TTGTGTGTGTGTGTGTG	TTG,T	949.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=47;set=Intersection	GT:AF:DP	1/1:1.00:25
chr8	63659610	rs1319275	G	A	3940.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:81,185:0.70:266
chr8	63948134	rs6998383	A	G	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=25.37;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	63948185	rs34822356	TA	T	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.121;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=6.130;QD=1.20;ReadPosRankSum=-0.512;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:182,81:0.31:263
chr8	63951116	rs190945668	T	G	5501.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:133,257:0.66:390
chr8	63976677	rs4606052	C	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	63976754	rs4501570	A	G	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	63978658	rs5891887	TA	T	4981.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=21.85;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	64098729	rs58419856	A	AG	4337.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	65290650	rs298212	C	T	4068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=903;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=1.126;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:631,264:0.29:895
chr8	65711004	rs7842714	T	A	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.094;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:84,39:0.32:123
chr8	66442851	rs200521355	C	CA	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.671;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:37,20:0.35:57
chr8	66517486	rs3765205	C	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	66525548	rs11559265	T	C	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,76:0.67:114
chr8	66621153	rs77153743	C	T	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.045;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:259,48:0.16:307
chr8	66621411	rs76100380	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr8	66646997	rs138599850	A	AT	2040.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.707;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:308,121:0.28:429
chr8	66691934	rs972362	T	A	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.392;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:249,116:0.32:365
chr8	67066238	.	C	CT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.136;QD=0.33;ReadPosRankSum=-0.397;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:147,28:0.16:175
chr8	67068131	rs2446433	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	67105449	rs201293270	C	CT	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.915;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:147,40:0.21:187
chr8	67357690	rs1025228	G	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr8	67361018	rs12544088	G	C	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=-0.299;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:18,35:0.66:53
chr8	67364085	rs2465982	T	C	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:39,88:0.69:127
chr8	67365889	rs17321619	G	C	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:209,103:0.33:312
chr8	67369184	rs2303519	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr8	67380377	rs2719005	C	T	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr8	67380528	rs1060242	T	C	5622.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:170,269:0.61:439
chr8	67380677	rs13682	C	T	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:46,92:0.67:138
chr8	67411019	rs2251827	T	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	67428368	rs17322752	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:70,25:0.26:95
chr8	67577178	rs61753692	G	A	10805.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:258,510:0.66:768
chr8	67590460	rs6983214	C	T	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-1.556;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:39,70:0.64:109
chr8	67592152	rs1057463	T	C	5100.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:129,239:0.65:368
chr8	67705826	.	C	CT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.431;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr8	67755920	rs7008720	C	A	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	67813633	rs2358008	A	G	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	67970243	rs6997490	A	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr8	67973984	rs7812572	C	A	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.194;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:139,75:0.35:214
chr8	67999123	rs75348559	CT	C	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-1.137;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:51,27:0.35:78
chr8	68024469	.	G	GTT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.59;ReadPosRankSum=0.545;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	68066164	rs11784423	T	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.91;ReadPosRankSum=2.034;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	68115346	rs61753693	G	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:233,98:0.30:331
chr8	68130442	.	AAT	A	204.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;QD=34.12;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	68170564	.	C	CT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.093;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr8	68211691	rs35570525	T	TA	263.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr8	68396915	rs17343819	T	C	5212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=1.317;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:127,244:0.66:371
chr8	68536470	rs10957393	A	G	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.320;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=2.297;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:52,62:0.54:114
chr8	68864728	rs61753697	G	A	5166.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:167,252:0.60:419
chr8	68950289	rs6986739	C	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr8	68965521	rs10504417	C	T	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-1.209;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:129,47:0.27:176
chr8	68968166	rs1434774	C	A	4215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=0.636;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:374,129:0.26:503
chr8	68968171	rs1434775	G	A	4141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=-0.643;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:370,127:0.26:497
chr8	68981979	rs6990381	T	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	68984675	rs6985922	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	68993013	rs12682458	AT	GC	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	68993188	rs12682493	A	G	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	68995404	rs1030751	C	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	68995410	rs79583091	TG	T	489.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	68995468	rs1030752	C	T	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	68995633	rs1030753	A	G	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	68999938	rs4382459	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:75,43:0.36:118
chr8	69002965	rs12544121	A	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:80,44:0.35:124
chr8	69003009	rs34882769	GT	G	356.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr8	69009268	rs3812458	C	T	6560.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr8	69012364	rs1529819	G	A	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	69013818	rs10097733	C	T	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	69013865	rs10098030	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	69015242	rs1014663	T	C	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	69016055	rs13262734	A	G	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	69017281	.	G	T	633.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr8	69020496	rs4260880	T	C	12858.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr8	69021138	rs1434761	A	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	69031299	rs7015786	A	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	69104521	rs6472389	A	G	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr8	69143712	rs200889201	C	CT	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=4.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.360;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:94,37:0.28:131
chr8	69217174	rs2692030	T	A	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.186;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:93,47:0.34:140
chr8	69351982	rs2591004	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	69434195	rs2289831	T	C	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:298,148:0.33:446
chr8	69442819	rs56048834	G	A	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=2.410;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:160,76:0.32:236
chr8	69699620	rs7826534	A	T	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:33,65:0.66:98
chr8	69728008	rs16935099	A	G	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:30,105:0.78:135
chr8	69730432	rs16935106	G	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=0.987;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:23,28:0.55:51
chr8	69730488	rs16935109	G	C	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-0.102;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:34,46:0.57:80
chr8	70505272	rs4737996	A	G	2978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=0.610;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:372,186:0.33:558
chr8	70513855	rs752040	A	G	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:324,157:0.33:481
chr8	70516968	rs76379305	A	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=0.999;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr8	70539661	rs5892211	C	CA	217.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr8	70539911	rs4738002	G	A	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	70540216	rs3802275	C	T	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	70550678	rs149790744	G	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:35,64:0.65:99
chr8	70571313	rs3802278	G	A	7327.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:153,341:0.69:494
chr8	70571531	rs6990375	G	A	3998.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:104,190:0.65:294
chr8	70674223	rs73684303	C	T	2392.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:56,107:0.66:163
chr8	70744812	rs3750266	G	A	9949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=787;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=0.499;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:295,482:0.62:777
chr8	70964399	rs10089937	A	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	70967607	rs3750225	T	C	12528.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr8	70967727	rs3750226	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	70967744	rs201316659	CTT	C	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr8	71012811	rs1106334	A	G	17097.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr8	71037103	.	T	TA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.27;ReadPosRankSum=-0.007;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:204,36:0.15:240
chr8	71071695	rs2272670	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	71075113	rs72663933	T	C	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr8	71075146	rs10641831	A	ATTT	874.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=17.15;ReadPosRankSum=0.179;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:14,37:0.73:51
chr8	71082718	rs2958370	A	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	71086893	rs72663937	T	C	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=1.561;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	71129120	rs71558586	A	AAC	429.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	71486568	rs268566	G	C	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	71495308	rs145198874	GAC	G	1027.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	71495847	rs61065292	A	G	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.222;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	71499109	rs61412217	T	C	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	71510093	rs268626	A	G	8158.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr8	71550058	rs268571	G	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	71550144	rs35571096	A	G	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	71550904	rs376185421	T	TA	309	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr8	71574251	rs17760050	A	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	71593425	rs6991329	G	A	6030.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr8	71595728	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.821;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr8	72181868	rs76660214	T	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.010;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr8	72755040	rs7812453	A	C	4928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-1.084;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:131,242:0.65:373
chr8	72914433	rs35305136	CT	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-1.098;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:73,29:0.28:102
chr8	72958867	rs181920534	A	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.890;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr8	73117525	rs1842716	T	G	10270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=761;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-0.724;QD=13.50;ReadPosRankSum=0.448;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:264,497:0.65:761
chr8	73142382	rs12541758	C	T	6608.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:149,311:0.68:460
chr8	73142726	rs58254809	CA	C	1750.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:151,74:0.33:225
chr8	73146170	rs375770708	A	AT	894.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr8	73152837	rs4559286	A	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr8	73156976	rs2017235	C	T	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr8	73157131	rs17824282	C	T	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:303,166:0.35:469
chr8	73850203	rs11782118	G	A	16676.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr8	73921534	rs113373855	G	GGAGGTCGGGAGA	7793.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr8	73926236	rs2975841	T	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.429;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr8	73942712	rs34742076	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.238;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr8	73979824	.	C	CTA	172	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=2;MGOF=39;MMLQ=22;MQ=58.93;NF=0;NR=5;PP=172;QD=36.0;SC=CCCGTCTCTACTATATATATA;SbPval=1.0;Source=Platypus;TC=18;TCF=0;TCR=18;TR=5;WE=73979832;WS=73979814;set=Platypus	GT:AD:AF:DP	0/1:13,5:0.28:18
chr8	73982161	rs2291219	A	G	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:173,105:0.38:278
chr8	73983988	rs5892392	T	TA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.42;ReadPosRankSum=1.781;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:211,46:0.18:257
chr8	74169087	rs111494397	TA	T	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.838;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr8	74203576	rs4394387	G	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	74204653	rs2070764	A	T	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:104,208:0.67:312
chr8	74205710	rs140937357	GT	G	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=1.918;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:92,24:0.21:116
chr8	74209746	rs34188852	T	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr8	74213277	.	CTTTT	C	720.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.455;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=2.315;QD=27.72;ReadPosRankSum=1.617;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr8	74233349	rs3830704	T	TA	1870.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=8.139;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=3.198;QD=7.28;ReadPosRankSum=-0.508;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:184,73:0.28:257
chr8	74332207	rs6998213	A	G	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=0.500;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:99,26:0.21:125
chr8	74334947	rs150343947	AAAAC	A	2841.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:142,79:0.36:221
chr8	74335014	rs60338415	T	TAGAAAGAC	805.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr8	74335069	rs77267236	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr8	74440125	rs143916422	T	TCAGGAAAATTCAAATAATTTA	10793.73	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.60;SOR=2.423;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr8	74463089	rs3088139	T	G	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:3,113:0.97:116
chr8	74463724	rs79320778	TTTAA	T	1849.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr8	74463797	rs10112019	T	C	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	74464676	.	AG	A	35	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=22;MQ=60.0;NF=0;NR=2;PP=35;QD=39.0;SC=CTGCCAAACAAGTATCTTTGT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=74464684;WS=74464666;set=Platypus	GT:AD:AF:DP	0/1:1,2:0.67:3
chr8	74473876	rs28418483	G	A	8970.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:236,428:0.64:664
chr8	74473951	rs12546339	C	T	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:144,75:0.34:219
chr8	74527996	rs949493	C	T	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	74581290	rs11419133	A	AG	22580.73	.	AC=2;AF=1.00;AN=2;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=40.25;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,561:1.00:561
chr8	74737651	rs79429210	G	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr8	74744721	rs7842946	T	C	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr8	74782627	.	G	GA	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=3.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.259;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:130,40:0.24:170
chr8	74782696	rs34722969	T	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr8	74868305	rs12676883	T	C	6100.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:153,291:0.66:444
chr8	74888616	rs8075	G	C	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:90,151:0.63:241
chr8	74890927	rs112765233	C	CA	375.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-0.637;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr8	74890961	rs62509309	A	G	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:38,63:0.62:101
chr8	74891164	rs75674446	A	G	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:26,75:0.74:101
chr8	74891200	rs73687119	A	G	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.52;ReadPosRankSum=-0.896;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:25,67:0.73:92
chr8	74893821	rs1053079	A	G	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=0.916;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:35,71:0.67:106
chr8	74893850	rs1053077	C	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr8	74893880	rs7108	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr8	74917084	rs6472812	A	G	5352.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	75156799	rs16938828	C	G	3155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-0.637;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:114,151:0.57:265
chr8	75262798	rs7828201	G	C	20223.77	.	AC=2;AF=1.00;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	1/1:1,798:1.00:799
chr8	75262841	rs4321999	G	A	16144.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr8	75272287	rs3780014	T	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr8	75274141	rs11554166	T	G	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.522;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:263,104:0.28:367
chr8	75275312	rs4463412	C	T	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	75460784	rs150212729	T	TG	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	75460789	rs150990986	A	AG	96.14	.	AC=1;AF=0.500;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.04;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:0,4:1.00:4
chr8	75614614	rs269198	C	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:124,79:0.39:203
chr8	75614617	rs2162147	A	G	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:86,126:0.59:212
chr8	75618116	rs34916429	CT	C	711.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr8	75664516	rs34347449	CA	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.644;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr8	75664694	rs34841297	CA	C	17035.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.583;QD=22.87;ReadPosRankSum=0.752;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:249,496:0.67:745
chr8	75737770	rs36083765	C	CT	602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.182;QD=4.02;ReadPosRankSum=2.958;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:96,54:0.36:150
chr8	75737818	rs1991860	C	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=1.504;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr8	75761531	rs117775004	T	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,55:0.63:87
chr8	76452313	rs2943549	G	A	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	76452421	rs2943551	G	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	76459726	rs1800922	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	76463571	rs2272668	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:108,45:0.29:153
chr8	76465522	rs1800924	T	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	76468139	rs2941468	C	G	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	76468282	rs1805098	G	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	76468309	rs61003427	GTT	G	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr8	76472485	rs2941472	G	A	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	76472560	rs2941473	A	T	8917.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr8	76476193	rs1800951	C	A	3170.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:68,149:0.69:217
chr8	76476396	rs1805100	G	A	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr8	76476457	rs2272669	G	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	77745635	rs2733733	G	A	10929.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr8	77754904	rs1825366	G	A	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:117,75:0.39:192
chr8	77755152	rs2248913	T	C	6235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=2.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=1.009;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:116,282:0.71:398
chr8	77761425	rs35135295	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr8	77765298	.	ACCT	A	3357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DP=576;ExcessHet=3.0103;FS=8.575;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=10.80;ReadPosRankSum=5.017;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:209,102:0.33:311
chr8	77765865	rs2728455	C	T	8473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-1.190;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:176,388:0.69:564
chr8	77767797	rs16939379	C	T	4643.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:490,265:0.35:755
chr8	77879257	rs7000529	T	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	77895865	rs10087163	A	G	16242.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.42;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,639:1.00:639
chr8	77896472	rs10957830	C	A	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:25,70:0.74:95
chr8	77911986	rs137919839	CTG	C	2297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.545;QD=7.76;ReadPosRankSum=0.958;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:208,88:0.30:296
chr8	77912148	rs16939394	G	A	6167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-0.180;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:160,289:0.64:449
chr8	77912230	rs12718	G	T	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:73,158:0.68:231
chr8	79073301	rs62510328	A	G	4231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-2.050;QD=5.29;ReadPosRankSum=-2.069;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:537,263:0.33:800
chr8	79598666	.	G	GTTTA	4392.73	.	AC=2;AF=1.00;AN=2;DP=190;set=Intersection	GT:AD:AF:DP	1/1:6,175:0.97:181
chr8	79609917	rs370060109	CT	C	66	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.349;QD=4.71;ReadPosRankSum=-0.542;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr8	79629738	.	CA	C	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=9.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.945;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:73,29:0.28:102
chr8	79710584	rs41308447	A	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	80523667	rs35479042	G	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.961;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr8	80553512	rs13269060	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr8	80575954	rs13266097	T	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=2.282;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr8	80576923	rs375568053	C	CCTCT	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.888;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr8	80576942	rs34059899	T	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.744;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr8	80577224	rs71756967	T	TA	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=2.801;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:93,43:0.32:136
chr8	80678300	rs11448857	C	CA	3127.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr8	80678865	rs960978	C	A	5380.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr8	80965039	rs3824267	T	A	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	80965070	rs3780010	C	A	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.17;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	80965739	rs2303446	C	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	81553804	rs60295176	GA	G	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=5.502;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.169;QD=1.91;ReadPosRankSum=1.052;SOR=1.430;set=HC	GT:AD:AF:DP	0/1:52,31:0.37:83
chr8	81892766	rs2241972	G	A	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:190,263:0.58:453
chr8	81897200	rs7006101	C	T	11592.77	.	AC=1;AF=0.500;AN=2;DB;DP=956;set=Intersection	GT:AD:AF:DP	0/1:393,555:0.59:948
chr8	81905314	rs2016459	A	C	8876.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:239,428:0.64:667
chr8	81905397	rs2016465	A	G	9169.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:268,439:0.62:707
chr8	82355621	rs6473276	A	G	2932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=1.256;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:61,139:0.69:200
chr8	82391183	rs112313579	T	TG	8551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.172;QD=21.33;ReadPosRankSum=0.727;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:125,276:0.69:401
chr8	82391874	rs2305319	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr8	82392849	rs8192688	G	A	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:37,111:0.75:148
chr8	82392918	rs60855359	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr8	82439221	rs16909306	A	G	4061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-1.334;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:77,193:0.71:270
chr8	82441532	rs3842190	T	TG	816.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr8	82443387	rs11985337	T	C	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=-1.602;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:18,38:0.68:56
chr8	82590822	rs2932222	C	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.34;QD=25.51;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	82590861	rs2991004	G	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.987;QD=4.60;ReadPosRankSum=-0.149;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:50,23:0.32:73
chr8	82606782	rs2955006	A	G	3783.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:64,177:0.73:241
chr8	82713930	rs61516400	A	AGAGT	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	82727515	rs2635482	C	T	3416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.330;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:252,101:0.29:353
chr8	82727520	rs2600606	A	T	3403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=2.085;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:275,105:0.28:380
chr8	82727569	rs16909651	T	C	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:430,202:0.32:632
chr8	82741576	rs34550849	C	CA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.652;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr8	82752291	rs12056632	A	G	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-0.894;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:139,77:0.36:216
chr8	85441856	rs13248532	T	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr8	85716963	rs11784597	C	A	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	85785413	rs3780004	A	G	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-0.150;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:29,63:0.68:92
chr8	85799827	rs10712255	TC	T	573.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr8	86042370	rs11312968	AT	A	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.076;QD=5.55;ReadPosRankSum=1.468;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr8	86048000	rs36102162	AT	A	668.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.351;MLEAC=2;MLEAF=1.000;MQ=60.44;MQRankSum=0.422;QD=14.86;ReadPosRankSum=-0.033;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:4,41:0.91:45
chr8	86089787	rs12926	C	G	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	86114525	rs3217409	T	TTTA	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	86121311	rs3808538	G	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	86126827	rs112611553	C	CAACATT	5445.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	86134784	rs12550160	C	A	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	86135096	rs2132589	A	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	86135132	rs1021583	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	86158217	rs34150174	TTAAAC	T	6352.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:5,148:0.97:153
chr8	86158249	rs17740658	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	86163230	.	CTT	C	2201.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=0.400;SOR=0.373;set=HC	GT:AD:AF:DP	1/1:35,101:0.74:136
chr8	86171786	rs4739698	T	C	5031.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	86171816	rs4739699	A	G	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	86180906	rs10712447	CT	C	398.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.815;QD=8.66;ReadPosRankSum=-0.289;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:8,38:0.83:46
chr8	86180944	rs2006767	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	86244914	rs1995058	G	A	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	86250709	rs4740049	T	C	8467.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr8	86253982	rs1496532	C	T	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	86254062	rs1496531	T	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	86351997	rs20571	G	A	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr8	86360458	rs11340759	TC	T	4236.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	86388228	rs2307075	A	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	86389195	rs11780942	C	T	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	86389403	rs703	T	C	15619.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr8	87060672	rs3802225	A	G	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-0.236;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:89,54:0.38:143
chr8	87076150	rs981711	C	G	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	87076520	rs6998760	C	A	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:317,130:0.29:447
chr8	87111368	rs11382900	G	GA	1246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-1.291;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:116,96:0.45:212
chr8	87151606	rs2466326	G	C	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	87155094	rs1483779	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	87155274	rs11317974	AT	A	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=0.718;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	87226634	rs56993779	TCCGACATC	T	1119.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:76,33:0.30:109
chr8	87229739	rs4419794	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr8	87235150	rs2976190	C	T	1882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.160;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:298,125:0.30:423
chr8	87241797	rs11413051	A	AT	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.399;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:143,49:0.26:192
chr8	87241847	rs7814198	G	A	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.640;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:315,120:0.28:435
chr8	87242080	.	A	G	2826.77	.	AC=1;AF=0.500;AN=2;DP=620;set=Intersection	GT:AD:AF:DP	0/1:430,183:0.30:613
chr8	87394011	rs73271003	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr8	87439926	rs60177164	C	T	5766.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:115,263:0.70:378
chr8	87440101	.	CT	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=5.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=3.558;SOR=0.308;set=HC	GT:AD:AF:DP	0/1:107,28:0.21:135
chr8	87442753	rs9656826	A	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr8	87452766	rs4961191	A	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	87453030	rs10092164	A	G	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	87455070	rs71275852	TA	T	224.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=1.642;SOR=0.112;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr8	87460361	rs7012745	T	A	129.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	87469962	rs7464360	G	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=-0.812;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr8	87474085	rs7460650	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.625;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr8	87480890	rs7017706	C	T	2671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.956;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:354,169:0.32:523
chr8	87482324	rs6471352	C	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	87484669	rs13282351	C	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:211,88:0.29:299
chr8	87489562	rs66648775	AAC	A	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.672;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr8	87492720	rs112819265	A	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr8	87497176	rs11539113	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:107,47:0.31:154
chr8	87507366	rs7837569	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.582;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr8	87517679	rs34596274	C	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=2.167;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:137,49:0.26:186
chr8	87517700	rs35592191	C	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:110,43:0.28:153
chr8	87520894	rs68008113	C	A	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.094;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:118,49:0.29:167
chr8	87520948	.	C	CCCGCCTCCTGCACAGCACCTCTT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-0.269;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr8	87567031	rs2304790	G	A	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	87567193	rs2304789	C	T	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:277,136:0.33:413
chr8	87567305	rs3816240	A	C	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	87568644	rs2304787	T	G	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr8	87570665	rs1062850	A	C	18755.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,722:1.00:722
chr8	87570728	rs1062851	C	T	7741.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr8	87581682	rs10660354	T	TCA	6420.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr8	87581726	rs10104791	A	G	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.843;QD=4.43;ReadPosRankSum=-0.073;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr8	87588519	rs974279	T	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	87666251	rs4961206	T	G	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	87679098	rs3735967	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	87679303	rs6471482	A	C	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,280:1.00:281
chr8	87680112	rs7815125	T	A	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	87683465	rs1441242	C	T	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	87751848	rs78198409	GT	G	486.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.199;QD=2.72;ReadPosRankSum=-0.774;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:109,70:0.39:179
chr8	87755776	rs35807406	T	C	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:342,207:0.38:549
chr8	87899871	rs66493340	T	G	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:152,75:0.33:227
chr8	87899960	rs67958512	A	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.398;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:59,21:0.26:80
chr8	87917236	rs10504828	T	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.748;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr8	87951714	rs4644279	A	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	88440716	.	T	TA	2347.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.91;SOR=2.655;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	88440717	.	T	TCTTTTTA	2346.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.93;SOR=2.701;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	88622001	rs9692781	C	T	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:84,112:0.57:196
chr8	88622043	rs9694259	T	G	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-0.960;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:68,82:0.55:150
chr8	88622592	rs72670872	A	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,43:0.78:55
chr8	88624417	.	A	T	183	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=20;HapScore=4;MGOF=43;MMLQ=26;MQ=54.66;NF=2;NR=8;PP=183;QD=21.7771212547;SC=TTTTTTTTTTAAACTCCCAGT;SbPval=0.51;Source=Platypus;TC=30;TCF=5;TCR=25;TR=10;WE=88624425;WS=88624401;set=Platypus	GT:AD:AF:DP	0/1:20,10:0.33:30
chr8	89068596	rs2616495	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr8	89081541	rs2664347	A	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	89081730	rs2616490	T	C	6607.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:161,311:0.66:472
chr8	89081734	rs144762406	T	TA	4123.73	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:315,152:0.33:467
chr8	89128708	rs11384621	T	TA	1999.73	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:61,132:0.68:193
chr8	89198831	rs144312592	CAA	C	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=1.731;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr8	89339993	.	GCACA	G	566	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=2;HapScore=1;MGOF=82;MMLQ=24;MQ=59.27;NF=9;NR=9;PP=566;QD=31.6111111111;SC=GCGCGCGCGCGCACACACACA;SbPval=0.42;Source=Platypus;TC=27;TCF=12;TCR=15;TR=18;WE=89340004;WS=89339987;set=Platypus	GT:AD:AF:DP	1/1:9,18:0.67:27
chr8	90770609	rs39499	A	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr8	90777510	rs431264	G	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr8	90781953	rs40377	C	T	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=1.298;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:30,81:0.73:111
chr8	90784979	rs2230801	T	C	6138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-0.634;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:120,287:0.71:407
chr8	90792127	rs39506	A	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr8	90948273	rs2735384	C	T	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.353;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:41,72:0.64:113
chr8	91094086	rs7815279	A	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	91094983	rs3087750	G	A	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	91884534	rs7829663	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=1.286;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr8	91929652	rs34544744	GA	G	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=6.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.140;SOR=1.734;set=HC	GT:AD:AF:DP	0/1:41,21:0.34:62
chr8	91940285	rs2019889	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr8	91940446	rs1002583	C	T	1838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.456;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:404,138:0.25:542
chr8	91953138	rs7018395	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:190,82:0.30:272
chr8	91963466	rs34782158	CT	C	1344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.640;QD=8.79;ReadPosRankSum=1.313;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:111,42:0.27:153
chr8	91963472	rs71528761	T	G	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.605;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:109,41:0.27:150
chr8	91967658	rs2677572	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr8	91972899	rs2631017	G	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr8	91973099	rs2740780	A	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.133;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=3.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=2.677;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:90,40:0.31:130
chr8	91992746	rs2740774	C	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr8	92021036	rs2054805	C	T	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-0.454;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:50,74:0.60:124
chr8	92082753	rs3808378	C	T	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=1.215;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr8	92083230	rs28429767	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr8	92083424	rs11557571	A	G	9798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=1.329;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:263,458:0.64:721
chr8	92083592	rs5893159	CT	C	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.568;QD=4.92;ReadPosRankSum=0.269;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr8	92090573	rs11786324	G	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr8	92130316	rs55762572	A	G	4601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=0.333;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:100,212:0.68:312
chr8	92136728	rs11785003	C	T	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.324;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:53,47:0.47:100
chr8	92139254	rs12544236	T	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr8	92301249	rs4734009	G	A	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	92307978	rs10107822	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	92352887	rs7012287	C	T	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	92364100	rs10109254	T	C	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:369,203:0.35:572
chr8	92374753	rs17722765	A	G	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:124,64:0.34:188
chr8	92378782	rs10099092	C	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr8	92401457	rs10086685	A	C	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:74,115:0.61:189
chr8	92972780	rs2977676	G	A	5699.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:121,270:0.69:391
chr8	93088151	rs13252280	C	T	2903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=-0.621;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:65,131:0.67:196
chr8	93328820	.	AAGGAGAAGG	A	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=7.449;MLEAC=1;MLEAF=0.500;MQ=61.17;MQRankSum=2.857;QD=9.70;ReadPosRankSum=4.668;SOR=1.690;set=HC	GT:AD:AF:DP	0/1:37,23:0.38:60
chr8	93328993	rs138085384	CGAA	C,CGAAGAA	1830.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=74;set=Intersection	GT:AF:DP	1/2:0.22,0.74:50
chr8	93904087	rs3780016	T	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	94715965	rs6997642	C	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=1.665;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr8	94739345	rs2914959	A	G	6608.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:139,313:0.69:452
chr8	94752754	rs3813853	G	A	4576.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:69,206:0.75:275
chr8	94794620	rs3097427	C	T	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr8	94800261	rs376142937	CT	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.183;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr8	94808165	rs3134031	A	G	8784.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:229,413:0.64:642
chr8	94928208	rs4236818	A	C	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:157,83:0.35:240
chr8	94935937	rs4735258	T	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:32,7:0.18:39
chr8	95143172	rs1051624	T	G	5557.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:180,264:0.59:444
chr8	95143186	rs1051623	C	G	14421.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr8	95158146	rs13263145	G	C	2767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=1.127;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:79,130:0.62:209
chr8	95158259	rs2251734	G	A	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:380,196:0.34:576
chr8	95158382	rs1131830	C	T	3187.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:69,145:0.68:214
chr8	95160949	rs151133817	GT	G	5213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=7.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.61;ReadPosRankSum=1.691;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:78,175:0.69:253
chr8	95160958	rs76453018	T	G	2470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=17.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=2.200;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:144,126:0.47:270
chr8	95161102	rs35792427	G	A	2893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.414;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:527,192:0.27:719
chr8	95172403	rs11786634	T	C	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=-0.197;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:110,72:0.40:182
chr8	95172487	rs11785909	A	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr8	95174286	rs78214329	GA	G	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.971;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.238;QD=6.02;ReadPosRankSum=-0.848;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr8	95174535	rs56347019	C	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr8	95174570	rs56034198	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr8	95182986	rs2446866	T	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr8	95186295	rs2514813	T	C	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	95186382	rs3214050	G	A	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.581;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:147,72:0.33:219
chr8	95186510	.	G	GA	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.957;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr8	95188850	rs2243518	T	C	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr8	95189780	rs79317393	T	C	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:87,71:0.45:158
chr8	95206799	rs56129387	G	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:99,45:0.31:144
chr8	95390921	rs716770	C	T	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	95403809	rs71976540	GAC	G	4335.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:56,114:0.67:170
chr8	95419698	rs2291439	A	G	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr8	95470697	rs2919660	C	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	95479879	rs3099398	A	G	9726.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr8	95501148	rs76622312	T	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr8	95504224	rs3098725	G	A	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	95507237	rs112365062	A	AT	1747.73	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:90,120:0.57:210
chr8	95507328	rs4366055	A	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr8	95508721	rs2289455	C	T	12885.77	.	AC=1;AF=0.500;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	0/1:355,622:0.64:977
chr8	95511785	rs56372696	T	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr8	95518960	rs113892534	G	GA	1303.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:38,73:0.66:111
chr8	95521853	rs147073742	TACACACAC	T	6707.73	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:112,183:0.62:295
chr8	95524126	rs35725183	TTAAA	T	1122.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr8	95524209	rs3099412	C	T	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.52;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr8	95527077	rs79403712	C	A	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:95,143:0.60:238
chr8	95530000	rs12375388	A	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr8	95531419	rs1866844	T	C	12737.77	.	AC=1;AF=0.500;AN=2;DB;DP=941;set=Intersection	GT:AD:AF:DP	0/1:333,601:0.64:934
chr8	95538468	rs2890827	T	C	5440.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:161,267:0.62:428
chr8	95541223	rs957447	C	A	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-1.266;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:100,38:0.28:138
chr8	95541302	rs957448	A	G	3142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.217;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:504,209:0.29:713
chr8	95541371	rs957446	T	A	23263.77	.	AC=2;AF=1.00;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	1/1:0,917:1.00:917
chr8	95541663	rs3098719	T	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	95547119	rs2304764	T	G	2140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.156;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:548,170:0.24:718
chr8	95549547	rs2304765	A	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.07;ReadPosRankSum=-0.033;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr8	95550357	rs1866845	A	T	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	95550474	rs1866846	T	C	4956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=0.835;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:133,236:0.64:369
chr8	95559092	rs3133651	T	C	32710.77	.	AC=2;AF=1.00;AN=2;DB;DP=1269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,1254:1.00:1254
chr8	95565538	rs3133658	G	C	12508.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr8	95565762	rs3133659	A	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr8	95651239	rs7824334	T	G	26003.77	.	AC=2;AF=1.00;AN=2;DB;DP=1002;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,996:1.00:996
chr8	95651303	rs12679585	G	A	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:473,257:0.35:730
chr8	95651573	rs13268847	C	G	3404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-2.038;QD=4.59;ReadPosRankSum=0.378;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:526,216:0.29:742
chr8	95651590	rs5893292	C	CT	15173.73	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:156,383:0.71:539
chr8	95651599	rs2162237	A	C	14327.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:138,348:0.72:486
chr8	95654043	rs62523409	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr8	95655415	rs2303451	T	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr8	95658287	rs149099719	A	AT	283.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	95658526	rs60139063	T	C	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	95658562	rs57602858	A	AAAAT	3408.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	95673674	rs6471455	A	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	95673945	rs7820441	A	G	36.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr8	95674823	rs11404889	G	GT	832.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.931;MLEAC=2;MLEAF=1.000;MQ=60.73;MQRankSum=0.539;QD=15.71;ReadPosRankSum=1.004;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:7,46:0.87:53
chr8	95677132	rs1426171	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:74,27:0.27:101
chr8	95680229	rs1549466	C	T	1698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-0.961;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:235,107:0.31:342
chr8	95690579	rs12677519	T	C	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:288,168:0.37:456
chr8	95718131	rs55760931	CTTT	C	813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=0.845;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:32,44:0.58:76
chr8	95718314	rs11785	T	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr8	95732283	rs13267007	G	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,89:0.60:148
chr8	95738717	rs7816645	A	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr8	95746833	rs7815731	C	G	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	95750546	rs201512830	CA	C	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.000;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr8	95777578	.	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.118;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:85,16:0.16:101
chr8	95777657	rs4604401	G	A	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:20,55:0.73:75
chr8	95778671	rs11779347	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr8	95780553	rs140835859	TA	T	141.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr8	95790085	rs11996148	T	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-1.819;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:51,22:0.30:73
chr8	95792447	rs12056667	A	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=1.338;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr8	95793284	rs36116205	A	AT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-2.060;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:49,25:0.34:74
chr8	95793515	rs4398879	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr8	95841114	rs77861705	G	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr8	95853948	rs13271644	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr8	95877787	rs713113	T	C	4223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-3.683;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:494,254:0.34:748
chr8	95886551	rs10956928	A	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.496;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-1.246;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr8	95888799	rs6985452	G	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-1.984;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:108,37:0.26:145
chr8	95902819	rs368221608	AT	A	459.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=2.371;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:111,67:0.38:178
chr8	95902821	rs10109074	T	A	629.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.955;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:115,60:0.34:175
chr8	95902822	.	T	A	421.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DP=252;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=2.663;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:121,56:0.32:177
chr8	95902824	.	T	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=2.412;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:146,38:0.21:184
chr8	95906554	rs2466431	C	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	96046094	rs2678823	G	A	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:68,50:0.42:118
chr8	96047806	rs34960210	T	TA	1240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-0.322;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:21,76:0.78:97
chr8	96053782	rs79118993	GCT	G	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=2.532;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr8	96070181	rs2678832	T	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.100;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:81,31:0.28:112
chr8	96085317	rs4641029	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr8	96264286	rs62522659	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr8	97172403	rs2466129	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	97243720	rs2292835	G	A	6833.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:149,323:0.68:472
chr8	97246978	rs2643339	C	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr8	97256341	rs6993518	T	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr8	97257982	rs871798	T	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr8	97258719	rs1878638	C	T	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=0.506;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr8	97270991	rs2319603	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr8	97296205	.	G	GA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.676;QD=1.09;ReadPosRankSum=-0.674;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr8	97321898	rs961075	T	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:63,137:0.69:200
chr8	97332661	rs3735987	A	G	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=1.072;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:71,97:0.58:168
chr8	97342536	rs2280263	A	G	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:293,137:0.32:430
chr8	97342582	rs7001397	C	T	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:57,126:0.69:183
chr8	97343176	rs2271775	G	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-3.957;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:48,14:0.23:62
chr8	97343326	rs3830537	ATCTTGT	A	6295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.409;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=2.790;QD=26.45;ReadPosRankSum=0.799;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:78,160:0.67:238
chr8	97345590	rs3735986	A	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr8	97384315	rs2319815	A	T	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	97384408	rs2244423	C	T	8645.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.585;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=3.061;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=1.290;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:1,343:1.00:344
chr8	97384625	rs34027129	A	AG	388.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	97398106	rs369856367	TTC	T	1625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=882;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-5.165;QD=2.11;ReadPosRankSum=0.263;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:622,147:0.19:769
chr8	97398842	rs12541366	T	A	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	97506373	rs880938	C	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	97614661	rs1042381	T	A	2860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-1.935;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:380,176:0.32:556
chr8	97847358	rs1864384	G	T	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,66:0.55:119
chr8	98041698	rs113729124	C	T	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:35,80:0.70:115
chr8	98289721	rs118032326	C	T	22443.77	.	AC=1;AF=0.500;AN=2;DB;DP=1582;set=Intersection	GT:AD:AF:DP	0/1:526,1039:0.66:1565
chr8	98289986	rs28669903	C	T	11747.77	.	AC=1;AF=0.500;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	0/1:272,545:0.67:817
chr8	98787930	rs146027280	G	GTGCTTGGAGCTCCAGCAGC	571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.825;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.964;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:405,44:0.10:449
chr8	98787994	rs2449510	A	G	1580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.049;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:412,125:0.23:537
chr8	98788033	rs2449509	G	C	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.577;QD=3.03;ReadPosRankSum=1.662;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:303,99:0.25:402
chr8	98817432	rs4735496	C	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=1.248;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr8	98817552	rs57251463	C	CTT	455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=1.189;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:55,42:0.43:97
chr8	98817559	rs112813626	T	TG	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.789;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.839;QD=3.55;ReadPosRankSum=0.952;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:66,40:0.38:106
chr8	98827531	rs7818775	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:73,31:0.30:104
chr8	98827636	rs7818662	C	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:99,52:0.34:151
chr8	98828215	rs3073521	A	ACTT	1809.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:98,52:0.35:150
chr8	98828529	rs2331656	A	G	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.065;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.663;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr8	98828532	rs2331657	C	G	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=5.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=1.691;SOR=1.485;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr8	98828551	rs2331658	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,13:0.23:56
chr8	98831577	rs62524114	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.429;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:66,18:0.21:84
chr8	98943545	rs2290471	A	G	8393.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:229,394:0.63:623
chr8	98954012	rs2513845	T	C	10195.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr8	98954108	rs35407519	G	T	3808.77	.	AC=1;AF=0.500;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	0/1:705,264:0.27:969
chr8	98954272	rs3018906	T	A	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:30,65:0.68:95
chr8	98973560	rs62523561	C	T	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:54,120:0.69:174
chr8	98991223	rs1869608	A	G	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:429,172:0.29:601
chr8	98991281	rs1869607	C	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:182,78:0.30:260
chr8	99006787	rs16896514	C	T	4100.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:483,247:0.34:730
chr8	99015741	rs12680911	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr8	99016092	rs10955143	A	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,21:0.30:69
chr8	99030280	rs2248014	T	C	4294.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:365,245:0.40:610
chr8	99042892	rs36040926	C	CT	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.581;QD=2.99;ReadPosRankSum=-0.606;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:78,30:0.28:108
chr8	99045978	rs2255464	A	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr8	99105365	rs5893451	GC	G	518.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr8	99114970	rs8218	A	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr8	99118654	rs2242196	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	99121075	.	T	TA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.978;QD=0.59;ReadPosRankSum=0.763;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr8	99129507	rs2071598	G	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:67,23:0.26:90
chr8	99140544	rs2447508	G	A	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	99162634	rs7000738	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr8	99162888	rs4735530	A	G	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=1.237;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:74,39:0.35:113
chr8	99205111	rs3735885	T	C	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:42,112:0.73:154
chr8	99205612	rs3735887	C	T	8204.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:203,396:0.66:599
chr8	99208065	rs13264255	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr8	99208190	rs3779721	A	C	1647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-0.685;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:52,83:0.61:135
chr8	99208244	rs7010905	G	T	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.137;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:41,29:0.41:70
chr8	99224534	rs1542289	C	A	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr8	99895940	rs16897117	G	A	3247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.656;QD=4.66;ReadPosRankSum=-0.861;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:486,211:0.30:697
chr8	100133706	rs7460625	T	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	100160282	rs11339522	AT	A	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=1.551;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:49,35:0.42:84
chr8	100287517	rs199718445	CTT	C,CT	913.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=6.508;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.52;MQRankSum=1.086;QD=9.52;ReadPosRankSum=-0.971;SOR=1.093;set=HC	GT:AD:AF:DP	1/2:18,35,43:0.36,0.45:96
chr8	100287579	rs7840337	G	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	100836216	rs75904081	T	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:93,65:0.41:158
chr8	100844487	rs68156520	C	CA	58.82	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr8	100844758	rs36074608	T	C	6005.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr8	100871751	.	C	CT	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-1.686;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:139,54:0.28:193
chr8	100975002	rs6468700	A	G	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr8	100999575	rs12545059	A	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr8	101020548	rs3101322	C	G	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:57,81:0.59:138
chr8	101051024	rs930965	C	A	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:45,80:0.64:125
chr8	101053861	rs79634557	A	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.632;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.201;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr8	101053980	rs922207	C	T	6207.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:160,299:0.65:459
chr8	101059662	rs2980542	G	A	8222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-1.802;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:231,395:0.63:626
chr8	101084647	rs34914779	GT	G	317.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr8	101117554	rs1471294	T	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr8	101117734	rs1471293	A	G	10244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=832;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=1.124;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:327,503:0.61:830
chr8	101137897	rs2453626	T	C	3876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.152;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:95,187:0.66:282
chr8	101138096	rs1460933	T	C	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,70:0.59:118
chr8	101225708	rs1660352	C	A	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	101245567	rs146474292	C	G	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:66,110:0.62:176
chr8	101253092	.	G	GT	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.336;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=1.50;ReadPosRankSum=2.192;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:123,40:0.25:163
chr8	101280911	rs34297750	TAA	T	924.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=6.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=0.025;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:20,45:0.69:65
chr8	101281238	rs7014862	C	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	101281271	rs1660324	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	101522770	rs189830411	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr8	101540233	.	TA	T	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.012;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:68,42:0.38:110
chr8	101542205	rs2469652	G	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	101586133	rs2022923	T	C	2883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-1.569;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:59,131:0.69:190
chr8	101608919	rs2248609	T	C	3996.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:93,192:0.67:285
chr8	101620557	rs11418392	A	AC	1172.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr8	101625479	rs1078186	C	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr8	101648308	rs2155881	T	C	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr8	101661440	rs76477480	T	C	8106.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:199,379:0.66:578
chr8	101661603	rs7016136	T	G	11384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=924;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-0.864;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:359,551:0.61:910
chr8	101718932	rs62513920	C	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-4.956;QD=0.75;ReadPosRankSum=0.782;SOR=1.738;set=HC	GT:AD:AF:DP	0/1:133,22:0.14:155
chr8	101718965	rs62513921	G	A	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=32.331;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-6.794;QD=2.87;ReadPosRankSum=2.043;SOR=2.756;set=HC	GT:AD:AF:DP	0/1:239,37:0.13:276
chr8	101718968	rs62513922	C	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=31.969;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-6.919;QD=2.67;ReadPosRankSum=2.110;SOR=2.722;set=HC	GT:AD:AF:DP	0/1:248,37:0.13:285
chr8	101718987	rs62513923	G	A	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=34.083;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-7.679;QD=1.75;ReadPosRankSum=1.633;SOR=2.821;set=HC	GT:AD:AF:DP	0/1:315,38:0.11:353
chr8	101722092	rs1693557	T	C	93.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.77;ReadPosRankSum=-0.000;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr8	101937370	rs964919	A	T	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.79;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	101937374	rs3105460	A	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	101937455	rs964917	T	C	185.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	101960433	rs73697345	A	G	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-1.988;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:38,62:0.62:100
chr8	102504974	rs515622	C	G	12737.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr8	102555060	rs470801	G	A	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=1.246;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:98,47:0.32:145
chr8	102582492	.	G	T	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.206;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=12.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=-1.286;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:17,32:0.65:49
chr8	102585806	rs548564	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr8	102676566	rs3029400	T	TGAA	1059.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr8	102678798	rs10093032	C	T	3545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0.000;DB;DP=1071;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=0.551;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:795,270:0.25:1065
chr8	102678972	rs3735713	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:100,42:0.30:142
chr8	102701456	rs375965103	CA	C	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-0.555;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:357,109:0.23:466
chr8	103137693	rs487571	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:108,55:0.34:163
chr8	103220351	rs1265117	A	G	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	103238260	rs28999710	G	A	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:100,141:0.59:241
chr8	103372743	rs6468823	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	103541712	rs74754613	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	103563907	rs3808357	G	T	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	103564198	rs139792741	C	T	7878.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:227,373:0.62:600
chr8	103572551	rs57773710	T	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	103572992	rs3018444	C	G	67520.77	.	AC=2;AF=1.00;AN=2;DB;DP=1772;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.71;QD=45.04;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,1499:1.00:1499
chr8	103572992	.	CTGCAGCCCCTGCAG	GTGCAGCCCCTGCAG,GTGCAGCCCGTGCAA	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=8;MMLQ=23;MQ=61.39;NF=435,164;NR=446,160;PP=2962,2934;QD=20;SC=CTTGCAGCCCCTGCAGCCCCT;SbPval=0.47;Source=Platypus;TC=951;TCF=459;TCR=492;TR=881,324;WE=103573044;WS=103572982;set=Platypus	GT:AF:DP	0/1:0.93:951
chr8	103573001	rs3018445	C	G	28594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=1999;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.61;MQRankSum=-12.648;QD=15.57;ReadPosRankSum=-7.838;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:1058,778:0.42:1836
chr8	103573006	rs2916569	G	A	28457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;ClippingRankSum=0.000;DB;DP=1806;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=-16.298;QD=15.85;ReadPosRankSum=-4.162;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:1029,766:0.43:1795
chr8	103573010	.	CTGCAACCCCTGCAGCCCCTGCAACCCG	C	15740.73	.	AC=1;AF=0.500;AN=2;DP=1940;set=Intersection	GT:AD:AF:DP	0/1:919,823:0.47:1742
chr8	103664698	rs10639139	A	ATT	61.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.319;QD=6.19;ReadPosRankSum=0.366;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr8	103667781	rs118020675	C	T	4656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=1393;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-2.503;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:1025,353:0.26:1378
chr8	104054513	.	G	GT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.276;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:77,17:0.18:94
chr8	104078420	rs71984986	TGTAAAG	T	760.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr8	104081085	rs9992	G	C	10613.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr8	104166902	rs35605502	G	GC	8886.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr8	104312432	rs827528	A	G	4817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=994;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.619;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:683,306:0.31:989
chr8	104331088	rs3104026	G	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr8	104336672	rs827550	G	A	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	104340719	rs2270525	T	C	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:28,72:0.72:100
chr8	104343822	rs2934725	A	G	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	104388276	rs6468870	A	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr8	104390224	rs2687364	T	A	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:105,138:0.57:243
chr8	104394744	rs3098233	T	C	11113.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:2,435:1.00:437
chr8	104412830	rs10103739	C	T	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:268,109:0.29:377
chr8	104412935	rs2241778	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr8	104426904	rs10709873	CA	C	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-0.163;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:51,27:0.35:78
chr8	104426905	.	AAC	A	1088	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=1;MGOF=15;MMLQ=27;MQ=59.91;NF=11;NR=2;PP=1088;QD=87.5600220951;SC=CGCGGACAGCAACGCTCCCTT;SbPval=0.8;Source=Platypus;TC=50;TCF=39;TCR=11;TR=13;WE=104426918;WS=104426900;set=Platypus	GT:AD:AF:DP	0/1:37,13:0.26:50
chr8	104426907	rs367610017	CG	C	1050.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-1.386;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:55,30:0.35:85
chr8	104426910	rs114156661	T	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=-1.291;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:56,30:0.35:86
chr8	104427359	rs3134295	A	C	5977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=1224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=0.543;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:829,366:0.31:1195
chr8	104439629	rs72675468	T	C	94.88	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr8	104452554	rs36073721	A	ATAT	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.168;QD=4.25;ReadPosRankSum=-1.244;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr8	104709594	rs1176674	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	105261119	.	T	TTCTCTCTCTCTCTCTC	1159.73	.	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;QD=41.42;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	105261161	rs3072636	A	ATTTT	456.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.70;QD=41.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	105261175	rs2340767	A	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	105261946	rs1447063	C	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	105263248	rs1374519	C	T	11758.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr8	105263751	rs2252152	T	A	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	105264087	rs34085789	C	CA,CAA	2893.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.610;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.896;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.04;MQRankSum=0.461;QD=16.73;ReadPosRankSum=-0.554;SOR=0.916;set=HC	GT:AD:AF:DP	1/2:22,39,112:0.23,0.65:173
chr8	105367096	rs2458431	T	C	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	105393687	rs2253336	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr8	105440462	rs2246815	A	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr8	105459793	rs7821992	C	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr8	105463690	rs2669429	A	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=0.075;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:21,43:0.67:64
chr8	105478933	rs2298840	G	A	7063.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:197,325:0.62:522
chr8	105479149	rs2959023	A	G	5504.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:136,265:0.66:401
chr8	105601192	.	ACGCCGACGCCGCCGC	A	7268.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=449;set=Intersection	GT:AD:AF:DP	0/1:179,213:0.54:392
chr8	105601198	.	A	ACGCCGCCGC	3413.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=430;set=Intersection	GT:AD:AF:DP	0/1:226,101:0.31:327
chr8	105845706	rs145596017	T	TTTTTTTTC	6369.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=44.23;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	105845742	rs1380689	G	A	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-1.734;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:35,52:0.60:87
chr8	105907461	rs2290865	G	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	105907786	rs3214884	GT	G	7230.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	105907833	rs2290866	C	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr8	106331094	.	G	GGCGGCGGGA	4579.73	.	AC=2;AF=1.00;AN=2;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.75;QD=44.46;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	106573578	rs3735953	C	T	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.723;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:237,86:0.27:323
chr8	106807937	rs77382513	A	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr8	106807951	rs140881764	GAACTT	G	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=1.015;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr8	106808078	rs10505087	T	C	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=0.098;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:119,68:0.36:187
chr8	106811255	rs16873705	G	A	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr8	107371924	rs2022982	C	A	7072.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr8	107630536	rs3134136	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	107670141	rs2282510	G	A	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	107695648	rs3102433	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	107704940	.	TA	T	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=3.257;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.707;QD=0.84;ReadPosRankSum=0.733;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:157,48:0.23:205
chr8	107754583	rs1784468	T	G	7441.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.84;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr8	107782335	rs11996457	G	A	18017.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:1,694:1.00:695
chr8	107782395	rs11996466	G	A	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr8	108306155	rs10505104	G	C	6038.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:137,286:0.68:423
chr8	108306367	rs10110459	T	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr8	108315277	rs4472483	T	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	108334162	rs141029929	G	T	8288.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:221,398:0.64:619
chr8	108335042	rs7009753	C	T	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=2.469;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:78,47:0.38:125
chr8	108359026	rs10156232	G	A	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr8	108970264	rs3039298	T	TCA	9034.73	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:141,228:0.62:369
chr8	108970367	rs601558	A	G	10590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=796;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.742;QD=13.47;ReadPosRankSum=-2.072;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:278,508:0.65:786
chr8	109009081	rs1369068	T	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:71,25:0.26:96
chr8	109465432	.	A	AT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.661;QD=0.36;ReadPosRankSum=1.249;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:181,35:0.16:216
chr8	109498717	rs34429579	C	CT	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.768;QD=7.30;ReadPosRankSum=-0.549;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:26,34:0.57:60
chr8	110255596	rs2980587	T	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr8	110283256	rs11550169	T	C	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.20;ReadPosRankSum=-1.475;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:22,52:0.70:74
chr8	110283353	rs34660136	T	G	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=0.634;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr8	110293184	rs3830706	TA	T	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.762;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	110301944	rs2980616	A	C	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.28;ReadPosRankSum=-0.286;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:23,36:0.61:59
chr8	110301951	rs2980617	C	A	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.868;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.33;ReadPosRankSum=0.521;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:27,38:0.58:65
chr8	110301998	rs2980618	T	C	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:71,158:0.69:229
chr8	110302047	rs2980619	T	G	7258.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:154,347:0.69:501
chr8	110325969	rs78714120	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr8	110376861	rs7008687	G	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.807;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:35,42:0.55:77
chr8	110412337	.	A	T	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.307;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:257,87:0.25:344
chr8	110412519	rs1379369	G	A	6589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=0.925;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:156,309:0.66:465
chr8	110413824	rs2061294	C	T	3521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=0.226;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:97,168:0.63:265
chr8	110416813	rs1457286	C	T	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:50,86:0.63:136
chr8	110425594	rs4604408	G	A	182.56	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr8	110437384	rs4735133	A	G	4560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-0.199;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:106,218:0.67:324
chr8	110448635	rs10093885	A	G	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:53,92:0.63:145
chr8	110453466	rs11785973	T	C	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=-1.730;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr8	110455321	rs1673408	C	A	11054.77	.	AC=1;AF=0.500;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	0/1:284,528:0.65:812
chr8	110457011	rs72687015	A	G	11182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=1.556;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:325,535:0.62:860
chr8	110460355	rs370609517	CT	C	1436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.506;QD=10.49;ReadPosRankSum=1.645;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:32,105:0.77:137
chr8	110460488	rs1673407	G	T	8597.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:224,420:0.65:644
chr8	110461518	rs1673405	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr8	110464889	rs76401002	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr8	110465060	rs1673404	G	C	5973.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:140,287:0.67:427
chr8	110471796	rs5893958	TA	T	963.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.937;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.703;QD=11.90;ReadPosRankSum=0.668;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:33,48:0.59:81
chr8	110473907	rs1026439	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr8	110473965	rs1037697	AA	TT	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;JOINED;set=Intersection	GT:AD:AF:DP	0/1:61,94:0.61:155
chr8	110476341	rs138148833	AAATAT	A	665.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr8	110476993	rs1673398	A	G	5846.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:167,283:0.63:450
chr8	110489620	rs1783148	A	T	10257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=-2.458;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:213,480:0.69:693
chr8	110491840	rs1783147	C	G	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=0.541;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:50,82:0.62:132
chr8	110491877	rs1630942	G	A	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:79,98:0.55:177
chr8	110491964	rs1630134	A	G	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:64,93:0.59:157
chr8	110492949	rs1026437	G	C	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:77,152:0.66:229
chr8	110495192	rs2844254	T	A	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:51,115:0.69:166
chr8	110499063	rs17375750	T	G	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:69,105:0.60:174
chr8	110504088	rs56235913	CTTT	C	8494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.191;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.763;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.079;QD=27.94;ReadPosRankSum=-2.228;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:91,213:0.70:304
chr8	110505886	rs2607628	C	T	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:79,141:0.64:220
chr8	110516527	rs720139	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr8	110519814	rs1783153	T	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr8	110523207	rs72669109	A	T	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,50:0.76:66
chr8	110527556	rs55932317	A	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:62,96:0.61:158
chr8	110535444	rs10573846	CT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.670;QD=1.57;ReadPosRankSum=-0.687;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chr8	110566184	rs2703377	T	G	1757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.42;ReadPosRankSum=-1.925;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:34,80:0.70:114
chr8	110569827	rs2844231	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr8	110570060	rs2844232	A	G	7895.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:213,374:0.64:587
chr8	110620037	.	T	TCACACA,TCACA	1890.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=52;set=Intersection	GT:AF:DP	1/1:1.00:41
chr8	110657514	rs3108849	G	A	15222.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,595:1.00:595
chr8	113254087	rs28698529	G	A	1604.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.675;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.903;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=-0.348;QD=21.98;ReadPosRankSum=-0.175;SOR=0.341;set=HC	GT:AD:AF:DP	1/1:5,68:0.93:73
chr8	113420495	rs35988509	TG	T	3823.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	113516209	rs10955625	G	A	831.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,49:0.43:113
chr8	113529553	rs67362344	T	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr8	113599196	rs7463547	T	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	113599207	rs7460155	A	G	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	113842039	rs10106945	G	A	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	113842114	rs202095041	GCACACACACACA	G,GCA	856.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	1/2:0.65,0.35:34
chr8	116504323	rs800883	A	T	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	116679997	rs10100861	C	T	7695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-0.946;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:190,350:0.65:540
chr8	117709453	rs7004565	A	G	6344.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:165,307:0.65:472
chr8	117749535	rs11284390	GA	G	1382.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:43,85:0.66:128
chr8	117768128	rs28649280	G	A	9031.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:199,411:0.67:610
chr8	117782385	rs4514005	C	T	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	117783914	rs1133950	A	C	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:116,174:0.60:290
chr8	117783975	rs16888728	C	T	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:62,88:0.59:150
chr8	117791733	rs979866	T	C	4948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=994;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.456;QD=5.02;ReadPosRankSum=1.658;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:670,315:0.32:985
chr8	117799012	rs1867840	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.898;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr8	117864952	.	T	TA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.361;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=2.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.743;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr8	117887608	rs10094918	C	T	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.449;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:42,57:0.58:99
chr8	117950758	rs111477672	G	T	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:148,63:0.30:211
chr8	118184732	rs62510557	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr8	118184783	rs13266634	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:103,56:0.35:159
chr8	118185025	rs3802177	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr8	118185041	rs2466295	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	118185063	rs2466294	C	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	118533312	rs11990107	A	G	9637.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:217,442:0.67:659
chr8	118533382	rs7015216	T	A	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:56,131:0.70:187
chr8	118830820	rs10955837	T	C	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:65,76:0.54:141
chr8	118844039	rs12682457	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr8	118847782	rs11546829	G	A	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:73,143:0.66:216
chr8	119209773	rs2514743	C	T	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:57,99:0.63:156
chr8	119391791	rs5020517	T	C	6858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0.000;DB;DP=1027;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=2.093;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:623,390:0.38:1013
chr8	119451983	rs34337924	ATGT	A	94.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr8	119938725	rs7844539	T	G	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:71,131:0.65:202
chr8	119938782	rs2228568	T	C	7705.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:176,356:0.67:532
chr8	119940920	rs10554146	CAG	C	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr8	119941173	rs3134046	A	G	8762.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr8	119945166	rs1564858	G	A	7016.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:207,339:0.62:546
chr8	119964052	rs2073618	G	C	13164.77	.	AC=1;AF=0.500;AN=2;DB;DP=1026;set=Intersection	GT:AD:AF:DP	0/1:396,624:0.61:1020
chr8	119964283	rs2073617	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr8	120220775	rs71302978	CG	C	13244.73	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=33.70;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr8	120233910	rs34920533	C	T	10600.77	.	AC=1;AF=0.500;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	0/1:266,512:0.66:778
chr8	120431506	rs11538929	G	A	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:190,98:0.34:288
chr8	120580546	rs200158900	T	TA	679.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.106;MLEAC=2;MLEAF=1.000;MQ=62.08;MQRankSum=0.891;QD=19.42;ReadPosRankSum=0.356;SOR=0.117;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr8	120580640	rs2243749	G	T	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	120581643	rs12544233	G	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr8	120583148	rs2305125	G	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr8	120583185	rs2305126	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr8	120596023	rs10283100	A	G	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr8	120602908	rs935359	C	T	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	120602914	rs935360	C	T	6736.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	120613747	rs2289888	C	T	17106.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:0,672:1.00:672
chr8	120613822	rs2289889	C	T	11799.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr8	120629555	rs3217556	AC	A	973.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.944;QD=8.77;ReadPosRankSum=0.587;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:72,39:0.35:111
chr8	120631657	rs5894488	CA	C	678.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.838;QD=10.44;ReadPosRankSum=1.172;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:11,54:0.83:65
chr8	120631699	rs79975070	T	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr8	120651085	.	G	C	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.729;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:265,96:0.27:361
chr8	120754645	rs4871569	A	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	120790304	rs1509348	T	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.065;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:40,38:0.49:78
chr8	120790378	rs35033415	G	GA	482.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:75,35:0.32:110
chr8	120793296	rs7002501	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.073;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr8	120795607	rs13268676	G	A	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-0.172;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:177,102:0.37:279
chr8	120801805	rs6469846	C	T	4986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=924;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=1.574;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:617,301:0.33:918
chr8	120802018	rs112562547	A	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr8	120803637	rs9297605	C	G	7640.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr8	120803654	rs11996390	C	T	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:147,79:0.35:226
chr8	120814020	rs7813438	A	G	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:193,105:0.35:298
chr8	120816010	rs4871629	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr8	120843775	rs7828086	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.890;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr8	120844782	rs17818842	G	A	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.676;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:158,49:0.24:207
chr8	120847078	rs1055133	C	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=2.246;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr8	120847123	rs1055131	C	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.136;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:84,39:0.32:123
chr8	120847188	rs1055130	T	C	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr8	120886370	rs7840728	T	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr8	120940652	rs16893299	C	T	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:349,156:0.31:505
chr8	120940867	rs28461628	G	A	3161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.615;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=9.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.189;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:143,91:0.39:234
chr8	120940874	rs62528677	T	C	3102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.142;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=6.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=-0.206;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:123,81:0.40:204
chr8	120941953	rs7007554	G	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr8	120977489	rs34057546	A	G	6022.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:133,273:0.67:406
chr8	121013770	rs2271900	A	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:83,60:0.42:143
chr8	121180667	rs2198751	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr8	121210069	rs2305598	T	C	2621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-1.007;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:333,164:0.33:497
chr8	121210250	rs2305599	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr8	121211847	rs2326483	C	T	1925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=0.216;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:260,117:0.31:377
chr8	121215991	rs2305600	T	C	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.977;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:192,74:0.28:266
chr8	121220395	rs3765062	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr8	121221871	rs10505377	C	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=7.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-1.426;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr8	121226143	rs71571669	C	CT	465.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr8	121228679	rs4870723	A	C	6645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=1022;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=1.312;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:635,377:0.37:1012
chr8	121259843	rs2305604	T	C	8171.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr8	121267617	rs993823	C	T	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	121292947	rs17833744	C	T	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.444;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:313,125:0.29:438
chr8	121293142	rs35952226	CT	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.497;QD=1.74;ReadPosRankSum=-0.295;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:74,32:0.30:106
chr8	121383048	rs4463470	T	C	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr8	121383082	rs6469922	A	T	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	121408195	rs6650	T	C	6903.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	121426425	rs68086071	AGT	A	231.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	121455558	rs5894521	G	GA	2203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-0.009;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:70,152:0.68:222
chr8	121471361	rs6984090	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	121483196	rs13248998	G	A	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	121509825	rs35918868	C	CTTT	168.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	121518868	rs369783487	CT	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=1.82;ReadPosRankSum=2.027;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr8	121530061	rs13258768	C	T	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	121530190	rs13258848	A	G	22447.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.340;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=1.031;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:1,885:1.00:886
chr8	121530384	rs34340354	CTT	C	796.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	121531154	rs13269481	G	A	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	121587165	rs6984991	G	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr8	123683642	.	G	GA	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.667;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=2.843;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.661;QD=1.72;ReadPosRankSum=2.724;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:104,35:0.25:139
chr8	123966159	rs3802265	G	C	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:274,106:0.28:380
chr8	124027628	rs7159	T	C	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:82,148:0.64:230
chr8	124042733	rs2891672	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	124084909	rs2385160	G	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:138,77:0.36:215
chr8	124089526	rs13254600	C	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:162,75:0.32:237
chr8	124096315	rs4871346	C	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr8	124114333	rs10956116	G	T	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr8	124114560	rs10956117	T	C	2670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-1.528;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:310,154:0.33:464
chr8	124138855	rs16898012	G	A	3491.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:495,227:0.31:722
chr8	124138891	rs16898013	G	A	3686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-1.864;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:484,232:0.32:716
chr8	124140634	rs2385167	T	C	3991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DB;DP=780;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=2.143;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:498,246:0.33:744
chr8	124140807	rs34139718	T	TAAA	517.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr8	124142489	rs2272724	T	C	3492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=2.117;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:414,213:0.34:627
chr8	124154756	rs10101435	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr8	124157166	.	AT	A	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=5.123;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.448;QD=1.92;ReadPosRankSum=1.615;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:120,53:0.31:173
chr8	124359749	rs9297666	C	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr8	124381445	rs5894661	G	GTA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.972;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:42,7:0.14:49
chr8	124518953	.	C	A	321.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:51,19:0.27:70
chr8	124526607	rs2294088	G	A	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:113,91:0.45:204
chr8	124658203	rs72711231	T	C	11606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=859;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-0.825;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:292,556:0.66:848
chr8	124658404	rs11786734	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr8	124659329	rs11991744	C	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr8	124663769	rs10109736	A	T	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr8	124663895	rs16898689	G	A	12435.77	.	AC=1;AF=0.500;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	0/1:342,584:0.63:926
chr8	124663987	rs16898691	C	G	8946.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:236,420:0.64:656
chr8	124664130	rs11780509	C	T	3882.77	.	AC=1;AF=0.500;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	0/1:581,237:0.29:818
chr8	124664167	rs11784192	T	C	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:522,229:0.30:751
chr8	124664792	rs7387544	C	T	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:506,237:0.32:743
chr8	124664873	rs7387792	AT	GC	4995.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;JOINED;set=Intersection	GT:AD:AF:DP	0/1:341,145:0.30:486
chr8	124665211	rs7387855	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:80,44:0.35:124
chr8	124710729	rs2294013	C	T	5753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=1075;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.605;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:720,347:0.33:1067
chr8	124749610	rs6470179	C	T	14897.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=26.00;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,573:1.00:573
chr8	124749651	rs11331268	TC	T	17366.73	.	AC=2;AF=1.00;AN=2;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=29.24;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,594:1.00:594
chr8	124749704	rs10956146	T	G	8693.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr8	124792557	rs72715030	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr8	124792899	rs72715031	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.172;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr8	124798958	rs72715037	C	T	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:46,84:0.65:130
chr8	124817605	rs71576705	CT	C	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-0.217;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:36,51:0.59:87
chr8	124818447	rs2272684	C	G	2749.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:58,131:0.69:189
chr8	124824826	rs1946586	G	A	4084.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;MQRankSum=-0.259;QD=25.21;ReadPosRankSum=1.896;SOR=0.238;set=HC	GT:AD:AF:DP	1/1:1,161:0.99:162
chr8	124982107	.	CA	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.073;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr8	124982215	rs7008604	G	A	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:228,112:0.33:340
chr8	124985780	rs10102622	A	C	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:183,96:0.34:279
chr8	124987478	rs7465584	T	C	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.804;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:223,91:0.29:314
chr8	125022733	rs7844981	T	G	4568.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:112,221:0.66:333
chr8	125047370	rs4871451	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	125051966	rs4269524	A	G	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	125052018	rs4389914	T	C	13185.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:5,512:0.99:517
chr8	125061895	rs4870887	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:101,51:0.34:152
chr8	125072426	rs4483140	T	C	22781.77	.	AC=2;AF=1.00;AN=2;DB;DP=887;set=Intersection	GT:AD:AF:DP	1/1:0,877:1.00:877
chr8	125076589	rs7012186	T	G	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr8	125076988	rs4871460	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	125088636	rs9643188	A	G	8482.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr8	125094847	rs10956163	C	G	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	125107201	rs6470219	G	A	16451.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=45.07;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr8	125107207	rs6470220	C	T	17017.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=43.41;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr8	125110258	rs10956164	C	T	7145.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr8	125130966	rs13438814	G	C	2479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-2.813;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:58,116:0.67:174
chr8	125384436	rs7841552	C	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.75;ReadPosRankSum=0.310;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	125568182	rs141972884	AGG	A,GGG	16822.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=726;set=Intersection	GT:AF:DP	1/2:0.36,0.61:656
chr8	125568623	rs3829036	A	G	6783.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:210,323:0.61:533
chr8	125570144	rs4870903	G	A	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=9.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-0.114;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:53,36:0.40:89
chr8	125574913	rs7015228	G	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr8	125574925	rs7015374	G	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr8	125577869	rs2303952	C	G	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:184,84:0.31:268
chr8	125579788	rs3857944	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr8	125579973	rs6470251	C	T	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.268;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:300,121:0.29:421
chr8	125579990	rs6470252	C	T	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:279,130:0.32:409
chr8	125589956	rs7002655	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr8	125601780	rs12682032	C	T	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:54,125:0.70:179
chr8	125601964	rs74948302	C	T	5690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-3.670;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:138,272:0.66:410
chr8	125739749	rs891542	A	G	9874.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.78;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr8	125877560	.	CTTT	C	326.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=8.883;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=0.433;QD=6.81;ReadPosRankSum=0.439;SOR=1.895;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr8	125877563	rs13282575	T	C	596.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=4.181;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-0.153;QD=12.43;ReadPosRankSum=1.890;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:20,28:0.58:48
chr8	125877616	rs188912898	T	C	2396.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.39;MQRankSum=1.460;QD=45.22;ReadPosRankSum=0.131;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr8	125877622	rs193093189	T	C	2213.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.10;MQRankSum=1.374;QD=45.18;ReadPosRankSum=0.389;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,48:0.98:49
chr8	125877628	rs71510322	T	C	2259.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.62;MQRankSum=1.265;QD=49.13;ReadPosRankSum=0.641;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr8	125877634	rs13282853	T	C	2349.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.49;MQRankSum=1.000;QD=50.00;ReadPosRankSum=1.183;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr8	125877646	rs13282863	T	C	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.38;QD=45.36;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	125877652	rs13282870	T	C	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.38;QD=44.57;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	126056215	rs11370883	G	GC	15303.73	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr8	126059686	.	G	GT	46	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=14;HapScore=2;MGOF=31;MMLQ=21;MQ=58.6;NF=0;NR=4;PP=46;QD=13.0;SC=AATAAAGGTTGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=16;TCF=2;TCR=14;TR=4;WE=126059694;WS=126059676;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr8	126369898	rs2293890	G	C	8635.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr8	126445505	rs13277396	G	C	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:164,104:0.39:268
chr8	126445537	rs2235110	C	T	12762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.797;QD=24.88;ReadPosRankSum=-0.114;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:198,315:0.61:513
chr8	126445544	rs2235109	C	A	13351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.142;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.790;QD=23.30;ReadPosRankSum=-0.395;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:219,354:0.62:573
chr8	128099242	rs13257371	C	A	5416.77	.	AC=1;AF=0.500;AN=2;DB;DP=996;set=Intersection	GT:AD:AF:DP	0/1:666,329:0.33:995
chr8	128099269	rs4571699	A	G	6708.77	.	AC=1;AF=0.500;AN=2;DB;DP=1172;set=Intersection	GT:AD:AF:DP	0/1:769,400:0.34:1169
chr8	128099455	rs1840709	G	C	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:255,87:0.25:342
chr8	128099457	rs61262194	CGTG	C	2926.73	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:228,90:0.28:318
chr8	128428061	rs4871789	A	G	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	128428795	rs6998254	G	A	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	128428823	rs7002225	G	C	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	128429262	rs9297754	G	C	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;MQ=58.15;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	128972721	rs9649959	A	G	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=0.789;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:53,34:0.39:87
chr8	129061242	rs2720660	A	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	129162497	rs10956412	A	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:236,91:0.28:327
chr8	130496365	rs6997249	G	A	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	130760850	rs4144738	A	G	8491.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:267,421:0.61:688
chr8	130761030	rs4144736	G	C	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:65,82:0.56:147
chr8	130761644	rs4527833	C	T	5855.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:153,281:0.65:434
chr8	130772882	rs11276511	T	TGCCTGAGTCTTTCCCATA	7718.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=18.913;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.360;QD=24.98;ReadPosRankSum=3.757;SOR=1.412;set=HC	GT:AD:AF:DP	0/1:117,192:0.62:309
chr8	130774782	rs76880196	T	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr8	130788548	rs4733741	C	T	5005.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:141,234:0.62:375
chr8	130859185	rs115025292	A	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr8	130874674	rs298611	A	C	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	131092026	rs6415509	T	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,39:0.41:96
chr8	131124559	rs966185	T	C	4404.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:88,195:0.69:283
chr8	131127831	rs2305513	T	C	2127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=1.002;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:50,96:0.66:146
chr8	131172968	rs10089819	C	T	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	131179873	rs55937708	GA	G	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.371;QD=3.94;ReadPosRankSum=0.100;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:65,33:0.34:98
chr8	131181348	rs11392401	A	AT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=1.375;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr8	131191633	rs61558949	C	T	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.237;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:239,92:0.28:331
chr8	131192905	rs28495072	G	C	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	131193153	rs71572332	T	TA	1887.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.986;QD=13.68;ReadPosRankSum=-0.276;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:27,111:0.80:138
chr8	131353139	rs13265869	T	C	25652.77	.	AC=2;AF=1.00;AN=2;DB;DP=1029;set=Intersection	GT:AD:AF:DP	1/1:2,1019:1.00:1021
chr8	131373887	rs10091130	C	G	16362.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,629:1.00:629
chr8	131413956	rs10090106	A	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	131414083	rs10090231	A	G	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr8	131414257	rs10090767	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	131792607	rs5895055	C	CAAA	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=1.067;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr8	131812577	rs3067432	C	CA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=1.98;ReadPosRankSum=0.465;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr8	131812899	rs263237	G	T	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr8	131826621	rs1435446	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.64;ReadPosRankSum=1.559;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr8	131859768	rs56309349	TA	T	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=7.619;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=3.325;QD=3.27;ReadPosRankSum=-1.101;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:83,64:0.44:147
chr8	131897082	rs4128982	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr8	131916318	rs11781997	A	G	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:96,167:0.63:263
chr8	131916374	rs76542596	AG	A	1779.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr8	131921956	rs12547243	A	G	11137.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:315,559:0.64:874
chr8	131922186	rs71304398	C	CT	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=0.672;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:26,36:0.58:62
chr8	131922214	rs28416041	T	C	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.50;ReadPosRankSum=-0.657;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr8	131922223	rs56251739	G	T	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.82;ReadPosRankSum=0.238;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:20,27:0.57:47
chr8	132002576	rs1329803	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:48,53:0.52:101
chr8	132916459	rs28627763	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr8	132936266	rs142533670	ATCAGTAAGTCC	A	1740.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr8	132936281	rs200639448	ATACT	A	1808.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr8	132947529	rs4736523	A	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr8	132952727	rs34080810	A	AT	1972.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.972;QD=7.83;ReadPosRankSum=2.949;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:114,138:0.55:252
chr8	132965979	rs77421091	G	A	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	132966028	rs10755935	T	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.174;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr8	132966045	rs112472883	CTT	C	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.886;QD=7.14;ReadPosRankSum=0.386;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:49,32:0.40:81
chr8	132980709	rs6471017	G	A	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	132980781	rs2270879	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr8	132982824	rs1051221	A	G	6139.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:175,297:0.63:472
chr8	132988478	rs2270876	T	A	353.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr8	132996599	rs16904564	A	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr8	133008823	rs2270873	G	A	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	133015426	rs74919571	A	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr8	133023163	rs4736529	G	C	13774.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr8	133091905	rs11778661	C	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	133092138	rs2403730	G	A	15488.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr8	133101818	rs6471038	G	A	7899.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr8	133107830	rs7833441	T	C	8618.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,328:0.99:330
chr8	133107893	rs10956634	A	G	17294.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr8	133111307	rs2469493	C	G	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	133112392	rs1370568	G	A	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:106,196:0.65:302
chr8	133113531	rs34842500	A	T	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:38,98:0.72:136
chr8	133116251	rs6998880	C	T	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:31,81:0.72:112
chr8	133117362	rs9642906	T	A	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:66,114:0.63:180
chr8	133146758	rs145229480	AGAG	A	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=-1.680;QD=6.63;ReadPosRankSum=0.084;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr8	133146798	rs111447844	TGAGGA	T	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.242;MLEAC=1;MLEAF=0.500;MQ=63.17;MQRankSum=2.254;QD=23.35;ReadPosRankSum=0.298;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr8	133150103	rs2469515	C	T	4247.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:89,199:0.69:288
chr8	133175971	rs893391	G	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	133184644	rs3049340	TAC	T	1193.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:6,50:0.89:56
chr8	133192641	.	G	A	1039.77	.	AC=1;AF=0.500;AN=2;DP=241;set=Intersection	GT:AD:AF:DP	0/1:162,68:0.30:230
chr8	133492917	.	A	ACC	521.73	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr8	133492921	rs28606540	C	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr8	133634814	rs2272681	C	T	5628.77	.	AC=1;AF=0.500;AN=2;DB;DP=994;set=Intersection	GT:AD:AF:DP	0/1:649,338:0.34:987
chr8	133637659	rs2293979	G	A	3892.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:521,248:0.32:769
chr8	133700036	rs3857933	T	C	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:193,81:0.30:274
chr8	133723166	rs1895807	A	G	2300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=2.888;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:308,142:0.32:450
chr8	133734455	rs60723518	C	CAA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.674;QD=4.89;ReadPosRankSum=-0.000;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	133740259	rs201428959	AGT	A	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.699;QD=8.91;ReadPosRankSum=0.334;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr8	133759051	rs2739024	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr8	133764263	rs2467986	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr8	133764321	rs1469265	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr8	133769554	rs138117721	TGA	T	3551.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:55,100:0.65:155
chr8	133769625	rs11778229	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.769;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-1.169;SOR=2.476;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr8	133770869	rs11314346	AT	A	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.36;ReadPosRankSum=1.145;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	133811435	rs2244885	T	A	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:59,122:0.67:181
chr8	133836432	rs235441	C	T	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:56,109:0.66:165
chr8	133844508	rs16904746	C	T	6300.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:171,297:0.63:468
chr8	133854714	rs71276510	A	AT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.250;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:107,30:0.22:137
chr8	133858009	rs756201	C	T	4807.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:127,224:0.64:351
chr8	133880334	rs180203	T	C	8406.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr8	133885554	rs180210	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr8	133900252	rs180223	T	G	15968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=1140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-0.294;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:364,757:0.68:1121
chr8	133900386	rs2069550	T	C	18078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DB;DP=1352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-2.339;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:464,865:0.65:1329
chr8	133900840	rs10699743	A	ATG	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=-0.000;QD=7.94;ReadPosRankSum=-1.672;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr8	133909974	rs853326	A	G	5475.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:129,267:0.67:396
chr8	133910962	rs853324	T	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr8	133913525	rs853322	A	G	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:75,129:0.63:204
chr8	133920321	rs866468	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr8	133920411	rs2261147	T	C	6775.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:234,325:0.58:559
chr8	133920518	rs2069556	A	G	12587.77	.	AC=1;AF=0.500;AN=2;DB;DP=942;set=Intersection	GT:AD:AF:DP	0/1:330,601:0.65:931
chr8	133920624	rs853318	C	G	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:60,153:0.72:213
chr8	133925209	rs2687824	T	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,43:0.74:58
chr8	133931748	rs853304	T	C	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:92,137:0.60:229
chr8	133941626	rs853296	T	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	133947836	rs2739061	T	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr8	133947859	rs2739062	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	133960991	rs2246624	C	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=0.758;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr8	133961237	rs2246611	G	C	5966.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:181,283:0.61:464
chr8	133961279	rs2246608	C	T	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:81,138:0.63:219
chr8	133961299	rs144296671	GAA	G	1292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.069;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:59,59:0.50:118
chr8	133975283	rs2069561	G	A	4773.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:113,221:0.66:334
chr8	133975406	rs2687814	C	T	5448.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:180,262:0.59:442
chr8	133978709	rs138876980	C	CTG	870.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=64.29;MQRankSum=8.660;QD=9.57;ReadPosRankSum=1.895;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:47,44:0.48:91
chr8	133978711	rs28452373	C	G	2588.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.113;MLEAC=1;MLEAF=0.500;MQ=64.29;MQRankSum=6.709;QD=24.42;ReadPosRankSum=2.403;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:36,70:0.66:106
chr8	133978711	.	CT	GT	1560	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=6;MMLQ=27;MQ=62.49;NF=10,30;NR=18,16;PP=1512,1560;QD=54.2142857143;SC=GTCTCTCTCTCTGTGTGTGTG;SbPval=0.6;Source=Platypus;TC=46;TCF=17;TCR=29;TR=28,46;WE=133978722;WS=133978699;set=Platypus	GT:AD:AF:DP	0/1:32,46:0.59:78
chr8	133978711	.	CT	CTGT	1560	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=6;MMLQ=27;MQ=62.49;NF=10,30;NR=18,16;PP=1512,1560;QD=54.2142857143;SC=GTCTCTCTCTCTGTGTGTGTG;SbPval=0.6;Source=Platypus;TC=46;TCF=17;TCR=29;TR=28,46;WE=133978722;WS=133978699;set=Platypus	GT:AD:AF:DP	0/1:18,28:0.61:46
chr8	133979872	rs2249869	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr8	133981760	rs56230101	T	C	4828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-1.229;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:88,231:0.72:319
chr8	133984821	rs34669143	G	GT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.044;QD=0.46;ReadPosRankSum=0.998;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:136,28:0.17:164
chr8	134052198	rs3835182	G	GCACA	4457.73	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:124,124:0.50:248
chr8	134052219	rs113099362	CACACAT	C	955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.622;QD=2.23;ReadPosRankSum=4.539;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:358,70:0.16:428
chr8	134061324	.	G	A	3269.77	.	AC=1;AF=0.500;AN=2;DP=260;set=Intersection	GT:AD:AF:DP	0/1:98,155:0.61:253
chr8	134062266	rs2687836	A	G	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:243,116:0.32:359
chr8	134062327	rs2702972	T	G	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-0.886;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:71,40:0.36:111
chr8	134062331	rs2741194	G	A	1292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=-1.552;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:60,36:0.38:96
chr8	134062912	rs2252807	A	G	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	134062983	rs2252805	C	T	5842.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:140,267:0.66:407
chr8	134107223	rs2272706	A	G	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	134107618	rs10103453	G	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	134108453	rs2069568	C	T	8859.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr8	134108546	rs2069569	T	C	17050.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.71;ReadPosRankSum=2.687;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:4,686:0.99:690
chr8	134114716	rs733735	G	A	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.253;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr8	134114771	rs4478553	C	T	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-1.877;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:224,76:0.25:300
chr8	134125682	rs1133076	G	A	10672.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.084;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr8	134129130	rs35664939	T	TA	53.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr8	134144113	rs2294024	C	T	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:85,193:0.69:278
chr8	134146001	rs34419422	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr8	134225068	rs10089461	T	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr8	134225396	rs55733525	T	TC	33865.73	.	AC=2;AF=1.00;AN=2;DB;DP=984;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=35.57;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,952:1.00:952
chr8	134225434	rs13258091	T	C	21209.77	.	AC=2;AF=1.00;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	1/1:0,800:1.00:800
chr8	134237578	rs2280834	G	C	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:38,77:0.67:115
chr8	134251449	rs2929976	T	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	134261065	rs2233335	T	G	4973.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr8	134262599	rs11575973	T	C	11008.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr8	134266970	rs2272650	C	G	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	134270468	rs139790285	CCA	C	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,10:0.23:43
chr8	134271521	rs2233326	G	C	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr8	134292288	rs2977507	T	C	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	134292516	rs2272653	A	G	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr8	134296722	rs7816664	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	134296742	rs7820205	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	134308600	rs4236901	T	C	9970.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr8	134308937	.	GACACACACAC	GAC,G	1755	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=19;MQ=60.81;NF=1,1;NR=47,47;PP=1755,375;QD=36.625;SC=CCCAGACACAGACACACACAC;SbPval=0.75;Source=Platypus;TC=68;TCF=2;TCR=66;TR=48,48;WE=134308956;WS=134308927;set=Platypus	GT:AF:DP	0/1:0.71:68
chr8	134314037	rs139817736	CCATCAT	C	1021.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	134314363	rs35181826	A	G	364.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	134314369	rs2976580	A	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	134488007	rs2230542	G	A	18632.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.52;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,730:1.00:730
chr8	135522364	rs2289547	A	G	5276.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:129,243:0.65:372
chr8	135522463	rs2289548	G	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr8	135524644	rs17761176	T	C	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.979;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:164,74:0.31:238
chr8	135524797	rs3739429	G	T	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:74,126:0.63:200
chr8	135524933	rs3739428	G	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.75;ReadPosRankSum=1.580;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr8	135524938	rs3739427	T	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.58;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	135545058	rs28621035	T	G	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:131,70:0.35:201
chr8	135595944	rs7825462	T	C	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=11.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=0.630;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:62,23:0.27:85
chr8	135612595	rs894343	A	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:82,28:0.25:110
chr8	135614705	rs3739423	A	G	5908.77	.	AC=1;AF=0.500;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	0/1:663,349:0.34:1012
chr8	135649548	rs17698962	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr8	135649848	rs12541381	G	A	4814.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:136,224:0.62:360
chr8	135651967	.	G	GCAATTCATATCAGAGAAGCA	12134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DP=566;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.127;QD=25.71;ReadPosRankSum=0.215;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:194,278:0.59:472
chr8	135725058	rs71528372	C	T	5473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=-0.698;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:132,287:0.68:419
chr8	136306291	rs4344113	G	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	136560952	rs12545587	A	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:37,11:0.23:48
chr8	136561153	rs11166602	A	G	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.161;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:150,64:0.30:214
chr8	136657198	rs4243846	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	136657534	rs4373553	G	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	136659195	rs28621864	C	T	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:264,109:0.29:373
chr8	136659426	rs3184618	G	A	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	136659488	rs201645350	G	GA	34.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.90;ReadPosRankSum=0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr8	139149406	rs6577876	G	A	9249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=1.966;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:191,439:0.70:630
chr8	139149510	rs6577877	A	C	10470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.42;ReadPosRankSum=1.175;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:187,492:0.72:679
chr8	139151375	rs4634694	C	T	1303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-1.061;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:42,65:0.61:107
chr8	139151421	rs4634695	C	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr8	139151428	rs35147483	C	CTG	742.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr8	139153374	rs4909738	G	C	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:19,66:0.78:85
chr8	139158317	rs7006664	T	C	8264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=2.276;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:180,399:0.69:579
chr8	139164192	rs3750306	G	A	6922.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:164,318:0.66:482
chr8	139165068	rs3763590	C	T	4221.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:118,197:0.63:315
chr8	139165272	rs7835712	TG	CA	16064.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;JOINED;set=Intersection	GT:AD:AF:DP	0/1:283,408:0.59:691
chr8	139165289	rs7835830	T	C	7742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-0.109;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:233,370:0.61:603
chr8	139165463	rs11311519	CA	C	142.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr8	139189502	rs6985633	T	A	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	139190943	rs66488273	C	CA	1102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=3.650;QD=5.63;ReadPosRankSum=-1.853;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:127,69:0.35:196
chr8	139190957	rs4909747	T	G	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	139263328	rs4909765	A	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	139277934	rs61703386	T	C	1938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=1.358;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:215,119:0.36:334
chr8	139321179	rs6577909	A	G	3889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-2.275;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:413,227:0.35:640
chr8	139323246	rs56096441	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	139380103	rs370836089	AAC	A	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.755;QD=0.41;ReadPosRankSum=1.520;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:135,22:0.14:157
chr8	139603533	rs146913007	T	TC	3506.73	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:246,132:0.35:378
chr8	139603851	rs10106999	A	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.310;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chr8	139609075	rs72727816	A	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:144,80:0.36:224
chr8	139609087	rs7832390	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:164,87:0.35:251
chr8	139614436	rs4394401	G	A	9344.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:236,430:0.65:666
chr8	139614582	rs6993225	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr8	139617046	rs12546923	A	C	6875.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:185,326:0.64:511
chr8	139618754	rs4471041	T	C	5521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=0.476;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:166,270:0.62:436
chr8	139620049	rs12681582	T	G	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr8	139620267	rs11166829	G	A	4759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=0.702;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:96,218:0.69:314
chr8	139626176	rs7000261	C	G	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:76,108:0.59:184
chr8	139631650	rs7009396	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr8	139635883	rs7836250	A	C	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:77,120:0.61:197
chr8	139635920	rs7839790	T	A	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:133,199:0.60:332
chr8	139638307	rs3924860	T	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.21;ReadPosRankSum=-0.519;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr8	139642974	rs4131277	T	C	1163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-0.697;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:116,69:0.37:185
chr8	139647262	rs10091563	A	G	6781.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:128,319:0.71:447
chr8	139648892	rs11166830	G	A	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	139658747	rs4909439	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr8	139668032	rs11166832	T	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr8	139668300	rs12675091	C	T	4746.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:155,232:0.60:387
chr8	139672602	rs4072506	T	C	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	139672671	rs3935045	T	C	4073.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:86,190:0.69:276
chr8	139674213	rs11780732	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr8	139675869	rs11166835	G	T	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr8	139676082	rs4410946	A	G	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:75,128:0.63:203
chr8	139688697	.	A	AAAGG	2097.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;MQRankSum=-0.136;QD=27.97;ReadPosRankSum=0.122;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:3,72:0.96:75
chr8	139696502	rs5895552	GA	G	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.672;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=8.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-1.530;SOR=1.471;set=HC	GT:AD:AF:DP	0/1:108,56:0.34:164
chr8	139696635	rs4506262	T	C	15648.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr8	139697286	rs11787153	T	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=1.965;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	139697478	rs9644500	T	C	8683.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:201,421:0.68:622
chr8	139701209	rs4909444	G	T	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=1.509;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:227,88:0.28:315
chr8	139712323	rs4909835	A	G	6875.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr8	139727811	.	TTAAA	T	982.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=11.975;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=25.86;ReadPosRankSum=1.447;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:3,35:0.92:38
chr8	139733062	rs11774914	C	T	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	139733089	rs34929697	CA	C	3564.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	139734462	rs12678237	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr8	139736649	rs28726333	C	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	139736933	rs10112806	C	A	13462.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,524:1.00:524
chr8	139749638	rs4409435	T	C	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,43:0.72:60
chr8	139763554	rs77081234	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr8	139767349	rs2318338	T	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:61,121:0.66:182
chr8	139768085	rs7825723	G	A	8630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=2.063;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:207,403:0.66:610
chr8	139772601	rs77444657	C	G	1891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-0.098;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:193,112:0.37:305
chr8	139774831	rs5895560	G	GCA	4070.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:26,143:0.85:169
chr8	139823922	rs2318332	C	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:28,6:0.18:34
chr8	139824057	rs10101430	G	A	1472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=1.188;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:184,92:0.33:276
chr8	139825393	rs6577951	A	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=1.342;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr8	139838912	rs2292927	T	C	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:186,83:0.31:269
chr8	139845520	rs6993839	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr8	139889972	rs4736255	A	G	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	140630990	rs2615374	A	G	29618.77	.	AC=2;AF=1.00;AN=2;DB;DP=1170;set=Intersection	GT:AD:AF:DP	1/1:2,1147:1.00:1149
chr8	140998945	rs2614718	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr8	140999234	rs7821102	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr8	141231559	.	T	A	3322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DP=772;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-1.240;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:552,216:0.28:768
chr8	141293914	.	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=2.488;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:65,17:0.21:82
chr8	141297613	rs6999767	T	C	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr8	141310486	rs12156047	A	G	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	141445349	rs11267571	AAGAAAACAAAAAACAAAAACC	A	1305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=18.558;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.564;QD=3.50;ReadPosRankSum=2.296;SOR=1.498;set=HC	GT:AD:AF:DP	0/1:283,90:0.24:373
chr8	141461062	rs3735803	G	A	18694.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:3,735:1.00:738
chr8	141461185	rs3735802	A	G	18621.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr8	141461266	rs3735801	A	G	18585.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:0,699:1.00:699
chr8	141525465	rs2231527	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	141549346	rs35387146	CT	C	2255.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr8	141557497	rs2292782	T	C	2790.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:66,121:0.65:187
chr8	141559358	rs2292781	G	A	12686.77	.	AC=1;AF=0.500;AN=2;DB;DP=941;set=Intersection	GT:AD:AF:DP	0/1:321,609:0.65:930
chr8	141561393	rs2292779	G	C	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:54,121:0.69:175
chr8	141565892	rs4961270	A	C	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,71:0.62:115
chr8	141566311	rs2271738	C	T	5448.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:107,248:0.70:355
chr8	141566487	rs2271736	G	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr8	141568622	rs2292778	G	A	13022.77	.	AC=1;AF=0.500;AN=2;DB;DP=940;set=Intersection	GT:AD:AF:DP	0/1:322,615:0.66:937
chr8	141568699	rs2292777	A	G	6975.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:167,331:0.66:498
chr8	141568725	rs2292776	G	A	4601.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:120,208:0.63:328
chr8	141582896	rs13276958	T	C	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	141583108	rs34527405	ATT	A,AT	1995.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.046;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.859;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.714;QD=10.97;ReadPosRankSum=-0.329;SOR=0.833;set=HC	GT:AD:AF:DP	1/2:29,58,95:0.32,0.52:182
chr8	141669818	rs3835176	AT	A	4497.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:15,247:0.94:262
chr8	141670907	rs9324530	C	A	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	141679817	rs10283368	T	C	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	141685506	rs13249806	T	C	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	141685641	rs6998337	C	A	8713.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:3,345:0.99:348
chr8	141685774	rs13278258	A	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	141754888	.	G	GA	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-1.703;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:90,34:0.27:124
chr8	141756991	rs369382658	CT	C	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=5.633;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.478;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr8	141799379	.	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.776;QD=2.67;ReadPosRankSum=-0.271;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	141889801	.	C	A	30.29	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	141994240	rs13258775	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	141994271	rs13250222	C	A	1970.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;QD=41.06;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	141994272	rs13251272	A	C	963.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-0.424;QD=20.08;ReadPosRankSum=-0.032;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr8	141994297	rs4961311	A	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	141994393	rs11781807	T	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	142138860	rs3739232	C	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:38,81:0.68:119
chr8	142139028	rs116915947	G	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr8	142146708	rs307772	T	C	4350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DB;DP=709;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-0.617;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:450,254:0.36:704
chr8	142152442	rs307765	A	G	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:258,123:0.32:381
chr8	142160829	rs35212078	T	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:169,81:0.32:250
chr8	142161064	rs3816063	C	T	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:260,136:0.34:396
chr8	142166214	rs555399	C	T	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	142168337	rs59830378	C	T	4173.77	.	AC=1;AF=0.500;AN=2;DB;DP=930;set=Intersection	GT:AD:AF:DP	0/1:647,274:0.30:921
chr8	142173356	rs428300	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.362;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr8	142173689	rs2369612	A	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.724;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr8	142175563	.	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=3.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-1.054;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr8	142176280	rs2241735	G	A	3545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=2.158;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:405,215:0.35:620
chr8	142176507	rs412706	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:98,47:0.32:145
chr8	142185477	rs146645728	C	T	5027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=2.625;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:99,235:0.70:334
chr8	142185580	rs12675070	G	A	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:317,164:0.34:481
chr8	142185718	rs307733	T	C	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:344,190:0.36:534
chr8	142186573	rs307732	A	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr8	142191032	rs2278448	T	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr8	142200205	rs144741369	T	TCATGTTTG	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=7.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=1.905;SOR=0.051;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr8	142200216	rs73713359	G	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr8	142202884	rs7014062	T	C	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:449,254:0.36:703
chr8	142203122	rs71516606	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr8	142222261	rs3824235	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=1.087;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr8	142222331	rs145913953	C	T	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:34,96:0.74:130
chr8	142222374	rs7017848	A	G	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=3.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.238;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:184,66:0.26:250
chr8	142222445	rs3739238	T	C	4472.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:414,240:0.37:654
chr8	142225990	rs2288998	G	A	4327.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:609,271:0.31:880
chr8	142228077	rs3842198	AGAGCGGCCCCGCTCCGGT	A	1640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.286;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=5.066;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.985;QD=8.20;ReadPosRankSum=2.189;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:149,51:0.26:200
chr8	142228809	rs753779	T	C	4592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;ClippingRankSum=0.000;DB;DP=888;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-0.834;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:599,281:0.32:880
chr8	142229145	rs3739235	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:259,95:0.27:354
chr8	142229891	rs2304279	A	G	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:409,239:0.37:648
chr8	142229946	rs4961256	G	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:190,109:0.36:299
chr8	142231944	rs6983780	GC	AG	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;JOINED;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr8	142238339	rs34650936	C	A	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:183,96:0.34:279
chr8	142266691	rs7002500	A	C	11998.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:2,449:1.00:451
chr8	142367335	rs10875472	T	C	10677.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:243,494:0.67:737
chr8	142367400	rs11167054	G	A	12837.77	.	AC=1;AF=0.500;AN=2;DB;DP=919;set=Intersection	GT:AD:AF:DP	0/1:314,592:0.65:906
chr8	142367559	rs11785629	G	A	11878.77	.	AC=1;AF=0.500;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	0/1:263,543:0.67:806
chr8	142368150	rs7388121	T	G	2189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=0.391;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:25,60:0.71:85
chr8	142368156	rs7388122	T	A	2017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.02;ReadPosRankSum=1.274;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:23,49:0.68:72
chr8	142444234	rs371671775	GGGGT	G	762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=8.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.049;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:172,63:0.27:235
chr8	142444240	rs28490954	G	C	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=8.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.529;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:165,63:0.28:228
chr8	142444254	rs28372340	T	G	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.078;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=18.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=0.096;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:118,55:0.32:173
chr8	142444526	rs10104447	G	C	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.832;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:80,27:0.25:107
chr8	142444780	rs10104806	G	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:166,74:0.31:240
chr8	142445055	rs13250250	G	C	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr8	142445062	rs35650977	T	TG	474.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;MQ=60.23;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chr8	142445095	rs28592919	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.793;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr8	142445095	.	CCA	TCT	188	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=2;MGOF=16;MMLQ=28;MQ=60.0;NF=4;NR=2;PP=188;QD=40.2446458104;SC=TCCTCCAGCCCCAGTTTGCCT;SbPval=0.73;Source=Platypus;TC=21;TCF=13;TCR=8;TR=6;WE=142445105;WS=142445085;set=Platypus	GT:AD:AF:DP	0/1:15,6:0.29:21
chr8	142445097	rs28590477	A	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.794;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr8	142445538	rs11785585	T	C	5366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=813;ExcessHet=3.0103;FS=5.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=-2.548;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:519,288:0.36:807
chr8	142445540	rs143051012	T	TGCCCGCGGCCCTGGCCC	4260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.934;ClippingRankSum=0.000;DB;DP=802;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-0.128;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:452,206:0.31:658
chr8	142445680	rs11784911	A	T	6393.77	.	AC=1;AF=0.500;AN=2;DB;DP=1167;set=Intersection	GT:AD:AF:DP	0/1:767,372:0.33:1139
chr8	142446923	rs11782383	C	T	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:221,103:0.32:324
chr8	142446937	rs78448370	C	T	4182.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:86,193:0.69:279
chr8	142451177	rs7459842	G	A	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=4.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=-1.237;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:108,62:0.36:170
chr8	142457961	rs13259488	A	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.251;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.893;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:84,28:0.25:112
chr8	142458053	rs6578185	A	G	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:365,140:0.28:505
chr8	142459814	rs7003306	C	T	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	142477752	rs11775650	T	C	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	142480610	rs4907398	C	T	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr8	142483145	.	A	AC	233	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=12;HapScore=3;MGOF=127;MMLQ=15;MQ=58.34;NF=0;NR=13;PP=233;QD=18.3846153846;SC=ACCGGCTTTGACCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=32;TCF=0;TCR=32;TR=13;WE=142483153;WS=142483135;set=Platypus	GT:AD:AF:DP	1/0:19,13:0.41:32
chr8	142484366	rs33975024	A	AG	19495.73	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr8	142487333	rs2247440	A	G	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	142488662	rs2613643	C	T	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr8	142489410	rs2748418	A	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:196,104:0.35:300
chr8	142489981	rs2748417	C	T	8300.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr8	142490079	rs2613641	G	A	20255.77	.	AC=2;AF=1.00;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	1/1:6,836:0.99:842
chr8	142490120	rs2748416	G	T	18153.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.011;ClippingRankSum=0.000;DB;DP=715;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=1.060;SOR=0.128;set=HC	GT:AD:AF:DP	1/1:2,707:1.00:709
chr8	142490214	rs58431362	G	C	2741.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:45,129:0.74:174
chr8	142500345	rs75295956	C	T	9471.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:192,429:0.69:621
chr8	142505038	rs6578193	T	C	12694.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:1,501:1.00:502
chr8	142505056	rs2246587	T	C	12752.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.73;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,415:1.00:415
chr8	142505056	.	TG	CG,CT	2095	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=30;MMLQ=23;MQ=60.0;NF=92,23;NR=113,30;PP=2095,510;QD=10.3891278661;SC=GGCAGAGCAATGGTGGCTTGG;SbPval=0.54;Source=Platypus;TC=205;TCF=92;TCR=113;TR=205,53;WE=142505065;WS=142505046;set=Platypus	GT:AF:DP	0/1:1.00:205
chr8	142505057	rs2246586	G	T	1825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-1.604;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:294,120:0.29:414
chr8	142505578	rs2748404	C	A	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	142506461	rs2613637	A	G	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	142517130	rs11355664	TG	T	2087.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=3.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=2.453;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:231,107:0.32:338
chr8	142517137	rs56233552	G	A	5990.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:116,274:0.70:390
chr8	142517222	rs2748421	A	G	6548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;ClippingRankSum=0.000;DB;DP=878;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=-0.036;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:669,207:0.24:876
chr8	142517227	rs2613648	C	T	6579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=875;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.065;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:665,208:0.24:873
chr8	142528420	rs181895418	G	A	9685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=756;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=0.482;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:273,462:0.63:735
chr8	143310815	rs11167136	G	A	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:263,165:0.39:428
chr8	143352978	rs11777062	T	G	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr8	143365913	rs5895710	GT	G	6903.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	143381810	rs7822013	T	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:116,43:0.27:159
chr8	143382143	rs72687374	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr8	143399860	rs56055628	G	T	6364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=1250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.710;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:848,396:0.32:1244
chr8	143559431	rs10481394	T	C	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:41,88:0.68:129
chr8	143560504	rs13279697	A	G	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:29,74:0.72:103
chr8	143560555	rs13252518	T	C	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:86,198:0.70:284
chr8	143560895	rs12682337	G	A	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.658;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.906;QD=21.82;ReadPosRankSum=1.371;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:39,50:0.56:89
chr8	143560898	rs12680973	T	C	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.414;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.906;QD=22.00;ReadPosRankSum=0.621;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:39,50:0.56:89
chr8	143560996	rs66517676	AGCCAGCT	A	12947.73	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:200,325:0.62:525
chr8	143561206	rs4509377	G	A	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:68,154:0.69:222
chr8	143563087	rs11782438	C	G	3469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=0.476;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:120,166:0.58:286
chr8	143563161	rs11776057	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr8	143566028	.	C	T	5576.77	.	AC=1;AF=0.500;AN=2;DP=938;set=Intersection	GT:AD:AF:DP	0/1:605,327:0.35:932
chr8	143570281	rs73714305	G	A	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:58,104:0.64:162
chr8	143570921	rs7825551	A	G	10090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=1.129;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:257,462:0.64:719
chr8	143599631	rs13281622	A	G	8921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=0.400;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:240,421:0.64:661
chr8	143599634	rs13254098	T	G	24989.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.62;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr8	143599651	rs13281652	A	C	13240.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:2,484:1.00:486
chr8	143599665	rs13254123	T	C	10431.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr8	143599704	rs13281694	A	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	143599716	rs13278828	G	C	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	143599734	rs13281922	A	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	143599746	rs13281935	A	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.96;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	143599753	rs13281945	A	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.49;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	143603269	rs7463713	A	G	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr8	143603318	rs7462471	C	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:50,83:0.62:133
chr8	143603418	rs7460600	G	C	5991.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:143,276:0.66:419
chr8	143614623	rs13269567	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,19:0.26:73
chr8	143614641	rs13272804	A	G	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=1.795;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:98,44:0.31:142
chr8	143620570	rs7387853	A	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr8	143620822	rs7388198	T	C	3476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.773;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:534,228:0.30:762
chr8	143684655	rs58986836	C	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.248;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr8	143694775	rs28686812	G	C	26728.77	.	AC=2;AF=1.00;AN=2;DB;DP=1025;set=Intersection	GT:AD:AF:DP	1/1:0,1007:1.00:1007
chr8	143695678	rs28403912	A	G	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	143695681	rs28641083	G	C	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.62;SOR=1.641;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	143696749	rs28660666	G	A	12902.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.151;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=0.129;SOR=0.388;set=HC	GT:AD:AF:DP	1/1:3,504:0.99:507
chr8	143696832	rs28625055	G	A	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	143746087	rs33951456	CCA	C	30380.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=1222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.33;ReadPosRankSum=-1.275;SOR=0.623;set=HC	GT:AD:AF:DP	1/1:3,1151:1.00:1154
chr8	143761931	rs2294008	C	T	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr8	143762135	rs2920279	A	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	143762932	rs2976392	G	A	23905.77	.	AC=2;AF=1.00;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	1/1:0,921:1.00:921
chr8	143763043	rs2920298	A	G	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	143763259	rs71514093	T	TG	1930.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	143763490	rs2978982	T	C	35677.77	.	AC=2;AF=1.00;AN=2;DB;DP=1365;set=Intersection	GT:AD:AF:DP	1/1:0,1347:1.00:1347
chr8	143763547	rs1045531	C	A	22847.77	.	AC=2;AF=1.00;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	1/1:0,831:1.00:831
chr8	143763618	rs2976393	C	G	59796.77	.	AC=2;AF=1.00;AN=2;DB;DP=1334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,1320:1.00:1320
chr8	143763622	rs2976394	C	T	62548.77	.	AC=2;AF=1.00;AN=2;DB;DP=1382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.72;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,1368:1.00:1368
chr8	143763690	rs10216533	G	A	107098.77	.	AC=2;AF=1.00;AN=2;DB;DP=2473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,2461:1.00:2461
chr8	143763750	rs2976395	G	A	131750.77	.	AC=2;AF=1.00;AN=2;DB;DP=2931;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,2900:1.00:2900
chr8	143763757	rs1045547	T	G	128672.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=2912;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.68;ReadPosRankSum=2.373;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:2,2878:1.00:2880
chr8	143763924	.	G	A	11630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DP=853;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=0.204;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:272,539:0.66:811
chr8	143763958	rs1045574	G	A	17780.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr8	143764001	rs2976396	G	A	12228.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr8	143764101	rs1045605	C	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	143823863	rs13254346	G	C	17963.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr8	143823876	rs13254358	G	A	16251.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:1,614:1.00:615
chr8	143845950	rs2585187	A	G	8211.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr8	143845953	rs2717554	T	C	8211.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=1.142;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	143846593	rs12541206	T	C	7320.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr8	143849561	rs76359509	G	T	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:318,173:0.35:491
chr8	143849626	rs7006366	T	A	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.88;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	143856967	rs2304398	C	G	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr8	143857208	rs2304397	G	A	6289.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:119,266:0.69:385
chr8	143857265	rs2585125	G	T	21333.77	.	AC=2;AF=1.00;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	1/1:0,803:1.00:803
chr8	143857441	rs3214637	A	AGG	7817.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	143921804	rs3750246	C	T	5320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=0.075;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:280,146:0.34:426
chr8	143921812	rs3750247	A	G	5488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=-0.237;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:304,160:0.34:464
chr8	143922788	rs3802226	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr8	143956808	rs6395	A	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:73,22:0.23:95
chr8	143956925	rs6392	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=1.63;ReadPosRankSum=1.674;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr8	143956965	rs6391	A	G	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr8	143957405	rs6471570	A	C	5812.77	.	AC=1;AF=0.500;AN=2;DB;DP=1197;set=Intersection	GT:AD:AF:DP	0/1:826,360:0.30:1186
chr8	143957856	rs7822986	G	A	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:154,86:0.36:240
chr8	143957886	rs10105643	A	C	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:91,55:0.38:146
chr8	143958427	rs6387	C	T	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:342,191:0.36:533
chr8	143959067	rs80101721	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.742;QD=2.09;ReadPosRankSum=-0.718;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr8	143959174	rs75717953	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=3.549;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-3.008;QD=0.25;ReadPosRankSum=2.573;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:223,30:0.12:253
chr8	143959250	rs7818826	T	C	2796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-9.748;QD=4.95;ReadPosRankSum=-1.387;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:387,178:0.32:565
chr8	143959289	rs7818953	T	C	2236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-10.084;QD=4.72;ReadPosRankSum=0.046;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:332,142:0.30:474
chr8	143959412	rs28551743	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-1.566;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr8	143960597	rs5283	G	A	13330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.965;ClippingRankSum=0.000;DB;DP=2388;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.554;QD=5.65;ReadPosRankSum=-0.922;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:1588,770:0.33:2358
chr8	143961005	rs6410	T	C	2853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.264;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:413,178:0.30:591
chr8	143993315	rs3097	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr8	143993640	rs6433	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr8	143994321	rs6435	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:121,31:0.20:152
chr8	143994349	rs6397	T	C	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.760;MLEAC=1;MLEAF=0.500;MQ=54.64;MQRankSum=0.261;QD=2.73;ReadPosRankSum=-1.601;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:108,32:0.23:140
chr8	143994388	rs6429	G	C	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=53.25;MQRankSum=0.360;QD=7.49;ReadPosRankSum=-0.172;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:91,29:0.24:120
chr8	143994391	rs79410128	G	C	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=0.457;QD=7.58;ReadPosRankSum=0.357;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:91,28:0.24:119
chr8	143994396	rs79201878	A	T	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=52.44;MQRankSum=-0.347;QD=7.78;ReadPosRankSum=1.756;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:81,22:0.21:103
chr8	143994398	rs80062072	A	G	648.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.500;MQ=52.37;MQRankSum=-0.292;QD=6.36;ReadPosRankSum=1.698;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:80,22:0.22:102
chr8	143994399	rs74838461	T	C	648.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.500;MQ=52.37;MQRankSum=-0.292;QD=6.36;ReadPosRankSum=1.760;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:80,22:0.22:102
chr8	143994419	rs5895735	T	TG	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=51.85;MQRankSum=1.350;QD=7.95;ReadPosRankSum=2.075;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:50,22:0.31:72
chr8	143994427	rs6394	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.32;QD=33.92;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	143994702	rs4538	G	T	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.963;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-0.644;QD=5.68;ReadPosRankSum=0.207;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:116,50:0.30:166
chr8	143994944	rs13252628	T	G	11923.77	.	AC=1;AF=0.500;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	0/1:276,559:0.67:835
chr8	143994978	.	CAAA	C,CAA	22618.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=533;MQ=60.02;set=Intersection	GT:AF:DP	1/1:1.00:504
chr8	143994981	.	AA	CG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=4;HapScore=1;MGOF=14;MMLQ=24;MQ=60.02;NF=90;NR=183;PP=2947;QD=20;SC=CCCTGAGCAAAAACAGAGCCC;SbPval=0.49;Source=Platypus;TC=276;TCF=90;TCR=186;TR=273;WE=143994990;WS=143994968;set=Platypus	GT:AD:AF:DP	1/1:3,273:0.99:276
chr8	143994982	.	A	ACG	22617.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=44.79;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,505:1.00:505
chr8	143995761	rs4536	C	T	16375.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr8	143996363	rs6418	A	G	3954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-7.727;QD=10.04;ReadPosRankSum=0.746;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:279,115:0.29:394
chr8	143996363	.	AGG	GGA	2070	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=4;HapScore=1;MGOF=2;MMLQ=23;NF=35;NR=38;PP=2070;QD=29.0886010255;SC=AGGCAGCCCCAGGCCTCCTGG;SbPval=0.51;Source=Platypus;TC=215;TCF=102;TCR=113;TR=73;WE=143996373;WS=143996353;set=Platypus	GT:AD:AF:DP	0/1:142,73:0.34:215
chr8	143996365	rs6399	G	A	3954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-7.756;QD=9.99;ReadPosRankSum=1.291;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:281,115:0.29:396
chr8	143996503	rs121912978	G	A	4757.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:99,212:0.68:311
chr8	143996539	rs4539	T	C	4317.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:269,127:0.32:396
chr8	143996553	rs4546	G	A	4475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=1.587;QD=10.48;ReadPosRankSum=-3.831;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:290,137:0.32:427
chr8	143997131	rs10086846	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	143997309	rs13257680	C	T	5075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.483;QD=12.75;ReadPosRankSum=3.680;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:150,248:0.62:398
chr8	143997795	rs11781816	C	T	10525.77	.	AC=1;AF=0.500;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	0/1:320,495:0.61:815
chr8	143997877	rs7461740	C	G	2707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.000;DB;DP=858;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-9.091;QD=3.17;ReadPosRankSum=2.235;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:649,206:0.24:855
chr8	143997935	rs10099658	T	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.607;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=7.204;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-13.042;QD=0.42;ReadPosRankSum=-7.673;SOR=1.383;set=HC	GT:AD:AF:DP	0/1:488,71:0.13:559
chr8	143998426	rs13268153	C	T	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:80,141:0.64:221
chr8	143998662	rs13276226	G	A	19682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=1429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=14.68;ReadPosRankSum=0.037;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:444,897:0.67:1341
chr8	144064048	rs140972957	A	AT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=2.951;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr8	144097453	rs13279735	A	G	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,61:0.64:96
chr8	144099678	rs17061979	G	A	6176.77	.	AC=1;AF=0.500;AN=2;DB;DP=1161;set=Intersection	GT:AD:AF:DP	0/1:748,369:0.33:1117
chr8	144102493	rs11136286	C	T	3592.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:90,162:0.64:252
chr8	144102747	rs11547127	C	T	6633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=1243;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-1.526;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:821,406:0.33:1227
chr8	144105026	rs147881012	TCCCGGTGTTCGGGC	T	5679.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:69,141:0.67:210
chr8	144105342	rs7823963	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr8	144124609	rs11136300	T	C	22705.77	.	AC=2;AF=1.00;AN=2;DB;DP=888;set=Intersection	GT:AD:AF:DP	1/1:2,873:1.00:875
chr8	144125727	rs6997455	T	A	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr8	144126244	rs4612316	T	C	9711.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr8	144130550	rs12677862	C	G	7296.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr8	144162364	rs6993880	C	T	4805.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	144239660	rs7007949	G	A	6869.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:171,314:0.65:485
chr8	144239859	rs10109061	A	G	11639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=909;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=0.505;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:319,553:0.63:872
chr8	144240257	rs9694368	C	G	13716.77	.	AC=1;AF=0.500;AN=2;DB;DP=1059;set=Intersection	GT:AD:AF:DP	0/1:380,668:0.64:1048
chr8	144295154	rs61747644	C	T	6427.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:124,303:0.71:427
chr8	144295321	rs13253453	C	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	144295782	rs11538388	G	T	2103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.376;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:222,123:0.36:345
chr8	144332012	rs6558339	T	C	15954.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=26.37;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,605:1.00:605
chr8	144332082	rs11136275	T	C	2802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.831;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:394,179:0.31:573
chr8	144351394	rs7819483	A	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:50,91:0.65:141
chr8	144351632	rs6558341	A	G	25178.77	.	AC=2;AF=1.00;AN=2;DB;DP=1046;set=Intersection	GT:AD:AF:DP	1/1:2,995:1.00:997
chr8	144357213	rs3817675	G	C	7051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.122;ClippingRankSum=0.000;DB;DP=1468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.377;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:1008,432:0.30:1440
chr8	144357479	rs3812433	C	G	3985.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:487,233:0.32:720
chr8	144357975	rs2293924	C	T	9393.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr8	144357992	rs2293923	A	G	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:266,123:0.32:389
chr8	144358302	rs1056146	C	T	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:31,68:0.69:99
chr8	144358381	rs1056148	G	A	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:241,104:0.30:345
chr8	144378184	rs2235115	C	G	5029.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:383,274:0.42:657
chr8	144378868	rs7386259	A	G	34655.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.418;ClippingRankSum=0.000;DB;DP=1350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=-1.382;SOR=0.261;set=HC	GT:AD:AF:DP	1/1:1,1325:1.00:1326
chr8	144391452	rs11136285	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:100,57:0.36:157
chr8	144391728	rs7386475	A	G	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:239,133:0.36:372
chr8	144391796	rs10088567	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr8	144391873	rs10105378	A	G	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:88,54:0.38:142
chr8	144391924	rs10099789	CT	TC	2101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.418;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=1.367;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:219,117:0.35:336
chr8	144391930	rs10091561	G	A	4688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=0.231;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:229,133:0.37:362
chr8	144392368	rs2293925	G	A	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-1.851;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:283,126:0.31:409
chr8	144397694	rs7815223	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr8	144397798	rs35506042	G	GGA	1647.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:103,49:0.32:152
chr8	144398029	rs13275896	A	G	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:220,117:0.35:337
chr8	144398123	rs2293928	G	C	3509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=2.182;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:158,97:0.38:255
chr8	144398132	rs2293927	T	C	3710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=2.378;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:204,113:0.36:317
chr8	144398396	rs2293926	C	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,34:0.32:106
chr8	144399856	rs3215410	TC	T	2267.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr8	144399885	rs2272637	A	C	1643.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.445;QD=12.64;ReadPosRankSum=1.678;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:84,46:0.35:130
chr8	144399885	.	AG	CT	1238	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=27;MQ=60.12;NF=26;NR=15;PP=1238;QD=31.4992164601;SC=GGTGTGGGGCAGGCTCACCGC;SbPval=0.58;Source=Platypus;TC=102;TCF=64;TCR=38;TR=41;WE=144399894;WS=144399875;set=Platypus	GT:AD:AF:DP	0/1:61,41:0.40:102
chr8	144399886	rs2272636	G	T	1643.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.429;QD=12.55;ReadPosRankSum=1.375;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:84,47:0.36:131
chr8	144400065	rs2272635	C	T	5983.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:130,272:0.68:402
chr8	144400089	rs2272634	C	T	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:294,164:0.36:458
chr8	144403292	rs12680237	C	T	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-0.016;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:180,80:0.31:260
chr8	144403485	rs11544482	G	C	11262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=882;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-1.692;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:328,539:0.62:867
chr8	144406705	rs11544484	C	T	17965.77	.	AC=1;AF=0.500;AN=2;DB;DP=1359;set=Intersection	GT:AD:AF:DP	0/1:487,858:0.64:1345
chr8	144406881	rs12680498	G	A	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:329,165:0.33:494
chr8	144408616	rs3829019	G	A	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,82:0.70:117
chr8	144409934	rs35096181	C	A	17280.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr8	144409938	rs11424162	A	AG	17416.73	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr8	144411759	rs3812436	T	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.70;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	144411759	.	TAGGCCTTC	CAGGCCTTA,CAGGCCTTC	168	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=1;MMLQ=27;MQ=60.0;NF=2,4;NR=5,15;PP=41,168;QD=13.4954106946;SC=AGCAAGAAGCTAGGCCTTCTT;SbPval=0.45;Source=Platypus;TC=19;TCF=4;TCR=15;TR=7,19;WE=144411775;WS=144411749;set=Platypus	GT:AF:DP	0/1:0.37:19
chr8	144411767	rs2467894	C	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=7.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.894;SOR=0.037;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr8	144413416	rs2450772	G	A	5966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=863;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=0.414;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:521,334:0.39:855
chr8	144417051	rs2956274	A	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	144425247	rs7837655	C	A	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	144457678	rs72703712	G	A	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:61,121:0.66:182
chr8	144459231	.	C	CGT	1781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=17.64;ReadPosRankSum=3.226;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:27,74:0.73:101
chr8	144459233	.	CG	TG	2019	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=1.0000,0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=24;MQ=59.97;NF=28,34;NR=21,18;PP=2019,939;QD=41.6326530612;SC=TGTGTGTGCGCGTGTGTGTGT;SbPval=0.74;Source=Platypus;TC=65;TCF=34;TCR=31;TR=49,52;WE=144459241;WS=144459224;set=Platypus	GT:AD:AF:DP	0/1:22,52:0.70:74
chr8	144459233	.	CG	CGTG	2019	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=1.0000,0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=24;MQ=59.97;NF=28,34;NR=21,18;PP=2019,939;QD=41.6326530612;SC=TGTGTGTGCGCGTGTGTGTGT;SbPval=0.74;Source=Platypus;TC=65;TCF=34;TCR=31;TR=49,52;WE=144459241;WS=144459224;set=Platypus	GT:AD:AF:DP	0/1:16,49:0.75:65
chr8	144459233	rs3889112	C	CGT,T	3807.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.96;MQRankSum=0.000;QD=38.46;ReadPosRankSum=0.862;SOR=0.545;set=HC	GT:AD:AF:DP	1/2:1,23,75:0.23,0.76:99
chr8	144459329	rs901760	C	T	11057.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr8	144460336	rs144558056	C	A	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:181,82:0.31:263
chr8	144460569	rs901762	G	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	144462169	rs3812440	A	G	52179.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=2021;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.18;ReadPosRankSum=-0.752;SOR=0.387;set=HC	GT:AD:AF:DP	1/1:3,1990:1.00:1993
chr8	144463267	rs13275994	C	T	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr8	144463686	rs3817720	C	T	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	144511389	rs7386685	C	G	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	144511953	rs141816879	ATGG	A	39868.73	.	AC=2;AF=1.00;AN=2;DB;DP=1215;set=Intersection	GT:AD:AF:DP	1/1:0,916:1.00:916
chr8	144511995	rs1872900	A	G	24056.77	.	AC=2;AF=1.00;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	1/1:0,933:1.00:933
chr8	144520147	rs2294117	G	A	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:147,91:0.38:238
chr8	144522386	.	TGAG	T	174.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.348;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=5.958;QD=0.82;ReadPosRankSum=-2.896;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:192,22:0.10:214
chr8	144522387	rs2272754	G	T	1994.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-1.151;QD=7.98;ReadPosRankSum=-0.225;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:188,62:0.25:250
chr8	144522388	rs2272753	A	T	1995.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-1.151;QD=7.98;ReadPosRankSum=-0.320;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:188,62:0.25:250
chr8	144523018	rs2294115	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr8	144523323	rs2294114	G	A	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:127,56:0.31:183
chr8	144566969	rs2294119	C	T	10633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=775;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-1.591;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:262,504:0.66:766
chr8	144618379	rs11774857	A	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	144618480	rs11548254	G	T	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-2.738;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:134,49:0.27:183
chr8	144620183	rs4874147	T	C	7175.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	144623574	rs2242093	T	C	20758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DB;DP=1476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=-1.647;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:491,975:0.67:1466
chr8	144623735	rs2242092	G	C	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:30,132:0.81:162
chr8	144636949	rs7844860	T	C	21984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;ClippingRankSum=0.000;DB;DP=1533;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=0.943;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:451,1034:0.70:1485
chr8	144641161	rs4292703	A	G	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:264,121:0.31:385
chr8	144641753	rs4874151	A	C	11944.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:4,493:0.99:497
chr8	144642178	rs11774948	T	C	10286.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr8	144642596	rs7835865	T	C	5500.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:193,266:0.58:459
chr8	144642626	rs7831485	A	G	12182.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:1,473:1.00:474
chr8	144642986	rs11136298	T	C	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	144643321	rs12541790	A	G	7155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-0.075;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:130,308:0.70:438
chr8	144644405	rs11551198	G	A	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:336,168:0.33:504
chr8	144644583	rs1349806	G	C	7309.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:152,330:0.68:482
chr8	144644787	rs1377663	T	A	11813.77	.	AC=1;AF=0.500;AN=2;DB;DP=856;set=Intersection	GT:AD:AF:DP	0/1:303,542:0.64:845
chr8	144645265	rs55851711	T	TCTGG	2942.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.301;QD=13.62;ReadPosRankSum=-1.393;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:135,81:0.38:216
chr8	144649541	rs34071446	G	GC	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr8	144649550	rs7010602	A	G	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	144649601	rs13268196	A	G	3137.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.51;ReadPosRankSum=0.812;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:1,127:0.99:128
chr8	144649625	rs10097556	T	C	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	144649690	rs13254590	C	T	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:34,95:0.74:129
chr8	144649968	rs13255489	C	T	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:81,153:0.65:234
chr8	144650510	rs11136301	G	A	2977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=0.135;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:57,137:0.71:194
chr8	144650547	rs11136302	G	A	1537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=0.857;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:30,69:0.70:99
chr8	144650550	rs10101426	T	C	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.73;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	144650925	rs13279011	A	T	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	144651554	rs6983410	A	G	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=40.74;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	144651576	rs7013931	C	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.63;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	144652393	rs11280720	C	CCCCTCCTCA	16648.73	.	AC=1;AF=0.500;AN=2;DB;DP=1246;set=Intersection	GT:AD:AF:DP	0/1:746,428:0.36:1174
chr8	144653011	rs11777527	C	T	3483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=7.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.768;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:69,164:0.70:233
chr8	144653218	rs4874152	A	G	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	144654249	rs10866911	G	A	5041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.279;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:112,232:0.67:344
chr8	144654255	rs4874153	A	G	13727.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.92;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr8	144654582	rs4874154	C	A	60628.77	.	AC=2;AF=1.00;AN=2;DB;DP=1377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,1367:1.00:1367
chr8	144654586	rs4874155	G	C	60765.77	.	AC=2;AF=1.00;AN=2;DB;DP=1348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,1339:1.00:1339
chr8	144654594	rs4873803	G	T	18335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=1316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.976;QD=14.06;ReadPosRankSum=0.498;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:421,883:0.68:1304
chr8	144654693	rs4873804	G	C	9612.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:249,463:0.65:712
chr8	144657269	rs2290417	G	C	15148.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr8	144658711	rs872935	G	A	22948.77	.	AC=2;AF=1.00;AN=2;DB;DP=882;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,868:1.00:868
chr8	144659608	rs12678314	A	G	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	144660189	rs896953	A	G	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr8	144660523	rs4475500	A	G	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	144662230	rs10090485	C	T	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:158,102:0.39:260
chr8	144662353	rs1062391	G	A	8271.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr8	144668590	rs11780087	T	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	144671244	rs4874160	C	A	11190.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr8	144671685	rs6985081	G	C	23120.77	.	AC=2;AF=1.00;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	1/1:0,867:1.00:867
chr8	144671922	rs3812448	G	A	17624.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr8	144672541	rs751932	T	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	144681777	rs10282929	G	T	9867.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr8	144687092	rs896962	T	C	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:321,157:0.33:478
chr8	144688736	rs2242090	C	G	10084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-2.421;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:259,486:0.65:745
chr8	144689146	rs2242089	C	T	5524.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:507,311:0.38:818
chr8	144689588	rs7818082	G	A	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:269,160:0.37:429
chr8	144689686	rs4874169	A	G	37480.77	.	AC=2;AF=1.00;AN=2;DB;DP=1478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,1456:1.00:1456
chr8	144689914	rs11136305	C	T	5613.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:195,249:0.56:444
chr8	144689932	rs34360518	CACAT	C	10555.73	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:226,273:0.55:499
chr8	144690014	rs4874170	T	C	46462.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;ClippingRankSum=0.000;DB;DP=1841;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.030;QD=25.61;ReadPosRankSum=0.383;SOR=0.547;set=HC	GT:AD:AF:DP	1/1:3,1811:1.00:1814
chr8	144690886	rs10097337	A	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:31,58:0.65:89
chr8	144695176	rs2242087	C	T	6122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.000;DB;DP=1044;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.101;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:670,353:0.35:1023
chr8	144695499	rs2242086	C	A	7696.77	.	AC=1;AF=0.500;AN=2;DB;DP=1477;set=Intersection	GT:AD:AF:DP	0/1:995,479:0.32:1474
chr8	144695867	rs6558377	A	G	22202.77	.	AC=2;AF=1.00;AN=2;DB;DP=850;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,831:1.00:831
chr8	144696203	rs4634659	T	C	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	144697041	rs1049832	A	G	8910.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:243,427:0.64:670
chr8	144732026	rs3750203	G	A	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	144732363	rs4875017	T	C	14372.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr8	144732418	rs4874084	A	G	13758.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr8	144772151	rs35228840	TG	T	17152.73	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=30.47;SOR=0.942;set=HC	GT:AD:AF:DP	1/1:0,563:1.00:563
chr8	144774079	rs11136313	G	T	5029.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	144774089	rs11136314	A	C	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	144774233	rs11785723	T	C	13555.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:2,538:1.00:540
chr8	144775871	rs6987308	C	A	31446.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.936;ClippingRankSum=0.000;DB;DP=1230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=0.304;SOR=0.265;set=HC	GT:AD:AF:DP	1/1:1,1213:1.00:1214
chr8	144776109	rs11786757	A	G	14627.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr8	144776713	rs7464270	A	C	18091.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr8	144800004	rs12543136	G	A	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr8	144800552	rs6997797	C	T	6400.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr8	144801243	rs12678428	C	T	4236.77	.	AC=1;AF=0.500;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	0/1:504,253:0.33:757
chr8	144801347	rs5895782	AC	A	6973.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:2,230:0.99:232
chr8	144801681	rs11778657	G	A	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	144803616	rs11783357	C	T	34316.77	.	AC=2;AF=1.00;AN=2;DB;DP=1299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,1257:1.00:1257
chr8	144808003	rs4875045	G	C	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	144808747	rs11136321	G	A	29132.77	.	AC=2;AF=1.00;AN=2;DB;DP=1147;set=Intersection	GT:AD:AF:DP	1/1:2,1117:1.00:1119
chr8	144809804	rs13254035	G	A	10357.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr8	144810138	rs1137806	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr8	144810970	rs11136322	C	G	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	144811338	rs9969600	C	G	17232.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr8	144824479	rs35427453	G	C	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:316,166:0.34:482
chr8	144824898	rs7463016	A	C	19902.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	1/1:0,760:1.00:760
chr8	144825035	rs4074642	T	G	19301.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr8	144873666	rs9314416	G	C	8899.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr8	144873779	rs9314417	G	A	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	144873996	rs367554617	CA	C	328.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.683;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=7.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.076;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:177,36:0.17:213
chr8	144873997	rs6982642	A	C	3764.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.017;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=7.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=0.047;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:36,177:0.83:213
chr8	144874366	rs7461245	T	C	8307.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr8	144874554	rs6991873	T	C	3866.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.11;ReadPosRankSum=1.398;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:2,152:0.99:154
chr8	144876159	rs7460093	G	A	10889.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,424:1.00:424
chr8	144877835	rs34691721	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	144885580	rs13281371	A	G	8916.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr8	144887656	rs7830442	A	G	9563.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr8	144889172	rs10866915	A	G	24161.77	.	AC=2;AF=1.00;AN=2;DB;DP=926;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,919:1.00:919
chr8	144890828	.	G	C	5580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-1.141;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:547,316:0.37:863
chr8	144890873	rs10098508	A	T	27161.77	.	AC=2;AF=1.00;AN=2;DB;DP=1014;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=27.08;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,1003:1.00:1003
chr8	144893084	rs6558394	G	A	37796.77	.	AC=2;AF=1.00;AN=2;DB;DP=1458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,1432:1.00:1432
chr8	144894496	rs4875060	G	A	35037.77	.	AC=2;AF=1.00;AN=2;DB;DP=1364;set=Intersection	GT:AD:AF:DP	1/1:0,1354:1.00:1354
chr8	144894641	rs4875061	C	T	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr8	144894702	rs11404566	C	CT	2471.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	144900756	rs7833632	A	G	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	144904690	rs4875063	A	G	31804.77	.	AC=2;AF=1.00;AN=2;DB;DP=1235;set=Intersection	GT:AD:AF:DP	1/1:0,1222:1.00:1222
chr8	144911360	rs7461986	A	G	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	144917533	rs7465214	G	A	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	144917790	rs11774027	A	G	14040.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr8	144940069	rs35186960	C	CA	168.73	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	144940081	rs60421625	C	A	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	144940117	rs4977192	C	A	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=2.184;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:32,53:0.62:85
chr8	144940300	rs4977191	G	A	26106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DB;DP=1533;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-5.574;QD=17.13;ReadPosRankSum=0.721;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:537,987:0.65:1524
chr8	144940311	.	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DP=1463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.650;QD=0.33;ReadPosRankSum=0.757;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:1281,174:0.12:1455
chr8	144940666	rs368004220	G	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968;ClippingRankSum=0.000;DB;DP=4757;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.13;ReadPosRankSum=-3.110;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:4059,563:0.12:4622
chr8	144941181	rs7839934	G	C	21514.77	.	AC=1;AF=0.500;AN=2;DB;DP=1466;set=Intersection	GT:AD:AF:DP	0/1:431,982:0.69:1413
chr8	144942903	rs6558399	T	C	11747.77	.	AC=1;AF=0.500;AN=2;DB;DP=887;set=Intersection	GT:AD:AF:DP	0/1:326,542:0.62:868
chr8	144944161	rs35221054	C	T	12783.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:183,324:0.64:507
chr8	144944176	rs12542653	T	C	13429.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:190,352:0.65:542
chr8	144945792	rs13255110	T	C	10333.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:227,469:0.67:696
chr8	144946252	rs11136330	C	T	3523.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:143,168:0.54:311
chr8	144946345	rs34753358	G	A	8674.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:275,438:0.61:713
chr8	144946818	rs13260439	C	T	8480.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:193,388:0.67:581
chr8	144990335	rs1065837	G	A	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=-1.955;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:19,39:0.67:58
chr8	144990528	rs7014582	A	G	5454.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:134,250:0.65:384
chr8	144991176	rs6558405	T	C	8840.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:204,408:0.67:612
chr8	144992103	rs6558406	T	C	16966.77	.	AC=1;AF=0.500;AN=2;DB;DP=1210;set=Intersection	GT:AD:AF:DP	0/1:388,799:0.67:1187
chr8	144992361	rs7822511	T	C	6274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.478;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:164,305:0.65:469
chr8	144992862	rs7819099	A	G	11704.77	.	AC=1;AF=0.500;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	0/1:304,545:0.64:849
chr8	144993324	rs6984820	C	T	16934.77	.	AC=1;AF=0.500;AN=2;DB;DP=1212;set=Intersection	GT:AD:AF:DP	0/1:404,796:0.66:1200
chr8	144993377	rs6992333	A	G	13889.77	.	AC=1;AF=0.500;AN=2;DB;DP=1008;set=Intersection	GT:AD:AF:DP	0/1:352,647:0.65:999
chr8	144995736	rs11777402	G	A	25654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=1829;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=14.16;ReadPosRankSum=1.420;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:599,1213:0.67:1812
chr8	144995939	rs35723243	G	A	14188.77	.	AC=1;AF=0.500;AN=2;DB;DP=970;set=Intersection	GT:AD:AF:DP	0/1:308,650:0.68:958
chr8	144996029	rs7833924	A	G	9256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=0.525;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:239,422:0.64:661
chr8	144996408	rs11778026	T	G	8107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=722;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=0.491;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:318,394:0.55:712
chr8	144996598	rs11786903	G	A	16141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=1177;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.918;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:401,769:0.66:1170
chr8	144996635	rs11786934	G	A	16229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;ClippingRankSum=0.000;DB;DP=1183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=2.032;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:412,760:0.65:1172
chr8	144997656	rs7016416	C	T	11243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=768;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=0.793;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:231,523:0.69:754
chr8	144997927	rs7002002	G	A	12770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=968;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-0.549;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:336,616:0.65:952
chr8	144998169	rs1140522	C	T	19483.77	.	AC=1;AF=0.500;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	0/1:305,522:0.63:827
chr8	144998190	rs2857829	A	G	21052.77	.	AC=1;AF=0.500;AN=2;DB;DP=1021;set=Intersection	GT:AD:AF:DP	0/1:387,609:0.61:996
chr8	144999417	rs55836855	C	T	8564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.027;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:219,404:0.65:623
chr8	144999621	rs55646585	C	T	19893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=923;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.72;ReadPosRankSum=1.740;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:396,520:0.57:916
chr8	144999642	rs56117011	A	C	20106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;ClippingRankSum=0.000;DB;DP=927;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.857;QD=21.83;ReadPosRankSum=0.295;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:391,530:0.58:921
chr8	144999684	rs35916068	A	G	7864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.593;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.849;QD=11.40;ReadPosRankSum=-1.415;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:290,400:0.58:690
chr8	145000056	rs7002152	T	C	4771.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:172,234:0.58:406
chr8	145000898	rs56401829	A	G	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:49,81:0.62:130
chr8	145001031	rs55895668	T	C	10716.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:215,503:0.70:718
chr8	145001300	rs55984967	T	A	5133.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:80,215:0.73:295
chr8	145001311	rs55812715	T	C	4723.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:81,200:0.71:281
chr8	145001372	rs11782890	T	C	6741.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:181,314:0.63:495
chr8	145001509	rs11136333	T	C	13589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=1050;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-1.966;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:373,659:0.64:1032
chr8	145001588	rs11136334	C	T	7716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-2.360;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:235,359:0.60:594
chr8	145001784	rs3135109	A	G	11113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=0.001;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:358,525:0.59:883
chr8	145002283	rs11993233	A	G	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,73:0.55:133
chr8	145003777	rs11136335	G	A	20439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=1483;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.299;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:476,985:0.67:1461
chr8	145004546	rs11780911	G	A	26433.77	.	AC=2;AF=1.00;AN=2;DB;DP=1037;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,1024:1.00:1024
chr8	145005688	rs11462436	A	AC	3603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.688;QD=18.58;ReadPosRankSum=1.337;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:61,133:0.69:194
chr8	145006790	rs10866916	T	C	10034.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:249,453:0.65:702
chr8	145007187	rs11136336	G	A	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:118,230:0.66:348
chr8	145007534	rs7003580	C	T	9860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=-0.232;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:222,461:0.67:683
chr8	145008342	rs11782331	C	A	10418.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:228,455:0.67:683
chr8	145008443	rs11783772	A	T	5858.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:148,258:0.64:406
chr8	145008560	rs11783799	A	G	13717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.682;ClippingRankSum=0.000;DB;DP=1076;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.760;QD=12.92;ReadPosRankSum=3.226;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:390,672:0.63:1062
chr8	145008706	rs11782433	C	T	4853.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:106,213:0.67:319
chr8	145008931	rs6994460	G	C	14873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=1052;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=-2.630;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:337,686:0.67:1023
chr8	145010305	rs6988767	A	G	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr8	145011204	rs6993938	A	G	12618.77	.	AC=1;AF=0.500;AN=2;DB;DP=976;set=Intersection	GT:AD:AF:DP	0/1:351,617:0.64:968
chr8	145012466	rs11136338	A	G	7264.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:228,340:0.60:568
chr8	145012777	rs7823393	C	G	9680.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:248,454:0.65:702
chr8	145020477	rs12543539	T	C	7594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-2.020;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:153,364:0.70:517
chr8	145020636	rs12549853	G	A	2507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=-0.323;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:42,112:0.73:154
chr8	145057230	rs141244035	G	A	13742.77	.	AC=1;AF=0.500;AN=2;DB;DP=969;set=Intersection	GT:AD:AF:DP	0/1:316,637:0.67:953
chr8	145057852	rs76806097	C	T	29321.77	.	AC=1;AF=0.500;AN=2;DB;DP=1276;set=Intersection	GT:AD:AF:DP	0/1:469,758:0.62:1227
chr8	145057868	rs11544989	A	G	30384.77	.	AC=1;AF=0.500;AN=2;DB;DP=1304;set=Intersection	GT:AD:AF:DP	0/1:486,800:0.62:1286
chr8	145058037	rs11989052	A	G	5932.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:133,267:0.67:400
chr8	145058352	rs74593295	G	T	10516.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:226,491:0.68:717
chr8	145058539	rs80304851	T	C	8525.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:176,390:0.69:566
chr8	145059425	rs11136344	T	C	11982.77	.	AC=1;AF=0.500;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	0/1:326,566:0.63:892
chr8	145060112	rs11136345	G	A	6397.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:169,296:0.64:465
chr8	145066004	rs67714660	C	G	15770.77	.	AC=1;AF=0.500;AN=2;DB;DP=1051;set=Intersection	GT:AD:AF:DP	0/1:324,718:0.69:1042
chr8	145066853	rs56261297	C	T	12723.77	.	AC=1;AF=0.500;AN=2;DB;DP=915;set=Intersection	GT:AD:AF:DP	0/1:322,570:0.64:892
chr8	145066886	rs13277282	A	G	24899.77	.	AC=2;AF=1.00;AN=2;DB;DP=964;set=Intersection	GT:AD:AF:DP	1/1:2,924:1.00:926
chr8	145086876	rs60050811	T	C	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:99,186:0.65:285
chr8	145106938	rs60949781	GCC	G	18528.73	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr8	145107795	rs11136253	G	A	21124.77	.	AC=2;AF=1.00;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	1/1:0,773:1.00:773
chr8	145109873	rs371475686	TG	T	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=28.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-0.794;SOR=0.030;set=HC	GT:AD:AF:DP	0/1:50,39:0.44:89
chr8	145110901	rs7459752	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr8	145137609	.	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-2.850;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr8	145149823	rs13256214	G	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	145149860	rs6984764	A	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	145150101	rs11541475	T	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	145150832	rs7820984	A	G	19111.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,740:1.00:740
chr8	145151665	rs200379271	TGGCAGTGGGCATGTGGAATACTTCTCC	TCAGTGGGCATGTGGAATACTTCTCC,T	27155.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=737;set=Intersection	GT:AF:DP	1/1:1.00:613
chr8	145151668	.	CAGTGGGCATGTGGAATACTTCTCCA	C	16009.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DP=632;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.27;ReadPosRankSum=0.067;SOR=1.429;set=HC	GT:AD:AF:DP	1/1:2,585:1.00:587
chr8	145151693	.	A	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=3;HapScore=1;MGOF=4;MMLQ=27;MQ=59.92;NF=132;NR=202;PP=2965;QD=20;SC=ATACTTCTCCACTACCCCCAG;SbPval=0.36;Source=Platypus;TC=362;TCF=132;TCR=230;TR=334;WE=145151701;WS=145151655;set=Platypus	GT:AD:AF:DP	1/1:28,334:0.92:362
chr8	145158446	rs12549149	C	T	8584.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr8	145158503	rs11136254	G	T	10036.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr8	145160646	rs11136256	T	C	15404.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr8	145161823	rs11546144	G	A	9060.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr8	145161896	rs13263342	T	C	9704.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr8	145162598	rs10091401	G	C	8772.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr8	145163414	rs4977196	C	G	9609.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr8	145163647	rs4977195	T	C	14762.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,563:1.00:563
chr8	145164617	rs13281660	G	T	7921.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr8	145164847	rs13250446	A	G	28638.77	.	AC=2;AF=1.00;AN=2;DB;DP=1134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,1119:1.00:1119
chr8	145166134	rs55908964	C	G	17685.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,650:1.00:650
chr8	145168298	rs5895787	T	TG	3749.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	145168611	rs7463214	A	G	12459.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr8	145168824	rs7836836	T	C	15010.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr8	145170440	rs12543080	A	C	7136.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	145170704	rs13278106	A	T	19104.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,740:1.00:740
chr8	145171003	rs4977193	G	C	10325.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr8	145171201	rs1132230	A	G	34358.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=1360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.74;ReadPosRankSum=1.222;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:2,1333:1.00:1335
chr8	145223191	rs6982878	G	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	145223288	rs34819224	C	T	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	145223499	rs6558308	G	A	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	145234508	rs7842771	G	C	20587.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,796:1.00:796
chr8	145245631	rs6558318	T	C	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	145245944	rs10108542	A	G	5870.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	145247168	rs6988451	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr8	145254159	rs7464776	T	C	7194.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr8	145255553	rs6558320	C	G	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	145534733	.	TG	T	307.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr8	145534735	.	G	C	316.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.657;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-2.017;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr8	145536169	rs35680822	C	G	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:35,64:0.65:99
chr8	145536344	.	C	T	4529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DP=848;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=1.379;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:565,279:0.33:844
chr8	145537361	.	C	CCCGCA	2984	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=1;MGOF=60;MMLQ=23;MQ=51.94;NF=20;NR=54;PP=2984;QD=20;SC=TCCCCGCCTCCCCGCCTCCCC;SbPval=0.23;Source=Platypus;TC=134;TCF=29;TCR=105;TR=74;WE=145537389;WS=145537351;set=Platypus	GT:AD:AF:DP	1/0:60,74:0.55:134
chr8	145537367	.	T	C	2023.77	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.62;QD=43.06;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	145537369	.	C	G	2068.77	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.54;QD=47.02;SOR=2.007;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	145537372	.	G	T	1993.77	.	AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.42;QD=48.63;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	145537374	.	G	C,A	1813.77	.	AC=2,0;AF=1.00,0.00;AN=2;DP=42;set=Intersection	GT:AF:DP	1/1:1.00:37
chr8	145537390	.	CCCGCG	C	1149	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=1;MGOF=75;MMLQ=23;MQ=53.81;NF=49;NR=48;PP=1149;QD=12.0309278351;SC=TCCCCGCCTCCCCGCGCCGCC;SbPval=0.31;Source=Platypus;TC=129;TCF=58;TCR=71;TR=97;WE=145537403;WS=145537380;set=Platypus	GT:AD:AF:DP	1/0:32,97:0.75:129
chr8	145537414	.	G	GCCT	2979	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=5;HapScore=1;MGOF=52;MMLQ=23;MQ=55.65;NF=39;NR=30;PP=2979;QD=20;SC=CCGCCTCCCCGCGCCGCCTCC;SbPval=0.77;Source=Platypus;TC=106;TCF=54;TCR=52;TR=69;WE=145537424;WS=145537401;set=Platypus	GT:AD:AF:DP	1/0:37,69:0.65:106
chr8	145542375	rs55907012	T	C	12479.77	.	AC=1;AF=0.500;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	0/1:246,569:0.70:815
chr8	145550338	rs6599571	T	C	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	145557497	rs7013127	A	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	145619779	.	G	A	5935.77	.	AC=1;AF=0.500;AN=2;DP=400;set=Intersection	GT:AD:AF:DP	0/1:122,269:0.69:391
chr8	145620764	rs11556134	G	A	1660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=1.784;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:181,97:0.35:278
chr8	145625524	.	GCCCC	G,GCC	1236.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.827;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=1.879;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.25;ReadPosRankSum=2.741;SOR=0.317;set=HC	GT:AD:AF:DP	1/2:8,26,17:0.51,0.33:51
chr8	145638299	rs143778004	C	G	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:229,117:0.34:346
chr8	145639521	rs4992316	T	C	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	145639726	rs2272662	T	C	3472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-0.836;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:352,201:0.36:553
chr8	145640411	rs2977838	A	G	17402.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr8	145641328	rs17855765	C	T	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:199,95:0.32:294
chr8	145641564	rs2280839	T	G	3470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.939;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-2.975;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:455,208:0.31:663
chr8	145642002	rs2280838	C	T	1962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=3.130;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:292,128:0.30:420
chr8	145651262	rs2272658	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:100,56:0.36:156
chr8	145652408	rs139513541	G	GGT	3065.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=62.19;MQRankSum=14.914;QD=9.67;ReadPosRankSum=-1.550;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:226,91:0.29:317
chr8	145652412	rs3929255	C	G	3048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=62.38;MQRankSum=15.255;QD=10.06;ReadPosRankSum=-1.694;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:218,85:0.28:303
chr8	145654794	rs3862193	G	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.201;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr8	145660833	rs1010427	G	A	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-1.314;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:201,84:0.29:285
chr8	145661320	rs2721140	G	A	6473.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:163,287:0.64:450
chr8	145661675	rs7830832	G	A	5407.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:117,249:0.68:366
chr8	145662113	rs55665465	C	T	12796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DB;DP=1064;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.979;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:437,607:0.58:1044
chr8	145662377	rs2242270	A	C	22853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;ClippingRankSum=0.000;DB;DP=1707;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=1.123;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:576,1111:0.66:1687
chr8	145663814	rs13255086	A	G	2301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.378;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=3.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=0.180;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:243,135:0.36:378
chr8	145665407	rs2229315	C	T	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:216,173:0.44:389
chr8	145665516	rs2306383	T	C	25089.77	.	AC=2;AF=1.00;AN=2;DB;DP=951;set=Intersection	GT:AD:AF:DP	1/1:1,937:1.00:938
chr8	145665637	rs2620650	A	G	11023.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr8	145665699	rs2721188	C	T	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:88,201:0.70:289
chr8	145665761	rs2229313	G	A	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:281,139:0.33:420
chr8	145667405	rs2242264	C	G	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	145668042	rs741969	G	A	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:318,139:0.30:457
chr8	145668443	rs760477	G	A	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:96,240:0.71:336
chr8	145668481	rs2242263	C	T	10953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=1.560;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:223,498:0.69:721
chr8	145677469	rs2245052	A	G	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	145677973	rs2256094	C	T	9526.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr8	145678020	rs1871538	C	T	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	145689915	rs2721167	G	A	13371.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.02;ReadPosRankSum=1.162;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:1,513:1.00:514
chr8	145690111	rs3832555	CCTCT	C	1759.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr8	145690308	rs2721166	C	T	18116.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,700:1.00:700
chr8	145690348	rs2620644	G	A	21460.77	.	AC=2;AF=1.00;AN=2;DB;DP=832;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,823:1.00:823
chr8	145690396	rs2620645	A	C	16196.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,629:1.00:629
chr8	145691915	rs112422823	G	C	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:261,109:0.29:370
chr8	145692110	rs2306388	C	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	145692296	rs2250895	A	C	13466.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,521:1.00:521
chr8	145692385	rs2250891	C	T	16214.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr8	145692762	rs2291133	G	T	4491.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:502,250:0.33:752
chr8	145692812	rs2250779	C	T	27570.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.525;ClippingRankSum=0.000;DB;DP=1098;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=-1.007;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:1,1053:1.00:1054
chr8	145693720	rs2250657	A	G	20352.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:0,789:1.00:789
chr8	145697244	rs4925823	G	A	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr8	145699601	rs2721176	T	C	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	145723419	rs2721149	T	G	4182.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:97,197:0.67:294
chr8	145724275	rs3816732	T	C	8320.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:268,399:0.60:667
chr8	145729727	rs1063739	C	A	4951.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:110,230:0.68:340
chr8	145730330	rs2101039	G	A	15705.77	.	AC=1;AF=0.500;AN=2;DB;DP=1109;set=Intersection	GT:AD:AF:DP	0/1:387,707:0.65:1094
chr8	145732071	rs56010190	A	G	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:82,124:0.60:206
chr8	145736324	rs35440532	G	A	4675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=973;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=1.598;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:675,289:0.30:964
chr8	145737040	rs2279243	C	T	11549.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:242,538:0.69:780
chr8	145737286	rs756627	G	A	17026.77	.	AC=1;AF=0.500;AN=2;DB;DP=1264;set=Intersection	GT:AD:AF:DP	0/1:436,809:0.65:1245
chr8	145737514	rs4244610	G	A	8933.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:221,412:0.65:633
chr8	145737636	rs4925828	A	G	37958.77	.	AC=2;AF=1.00;AN=2;DB;DP=1451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,1442:1.00:1442
chr8	145737816	rs4251691	C	T	13114.77	.	AC=1;AF=0.500;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	0/1:271,579:0.68:850
chr8	145738581	rs71320828	TGG	T	3505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=10.852;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=23.69;ReadPosRankSum=0.586;SOR=0.121;set=HC	GT:AD:AF:DP	0/1:24,124:0.84:148
chr8	145738767	rs11342077	CG	C	66075.73	.	AC=2;AF=1.00;AN=2;DB;DP=1835;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=37.16;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,1778:1.00:1778
chr8	145739205	rs4925829	G	A	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.038;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=11.630;MLEAC=1;MLEAF=0.500;MQ=56.24;MQRankSum=2.305;QD=15.53;ReadPosRankSum=0.362;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr8	145739218	rs13267993	A	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=7.987;MLEAC=1;MLEAF=0.500;MQ=55.80;MQRankSum=1.768;QD=14.24;ReadPosRankSum=-0.611;SOR=2.290;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr8	145739235	rs373347518	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.687;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=0.251;QD=3.08;ReadPosRankSum=0.947;SOR=1.523;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr8	145739924	rs4244611	G	A	15290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=1191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=0.755;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:442,719:0.62:1161
chr8	145741130	rs4251689	C	T	5617.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:102,246:0.71:348
chr8	145741702	rs4244612	C	G	8315.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:239,394:0.62:633
chr8	145741765	rs4244613	G	A	11041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=822;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=2.973;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:283,522:0.65:805
chr8	145742514	rs2721190	A	G	10991.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr8	145742716	rs2721189	C	A	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	145742879	rs2306386	T	C	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:91,173:0.66:264
chr8	145745182	rs2721172	T	C	29486.77	.	AC=2;AF=1.00;AN=2;DB;DP=1153;set=Intersection	GT:AD:AF:DP	1/1:0,1131:1.00:1131
chr8	145747920	rs13277542	T	G	6081.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:130,270:0.68:400
chr8	145750138	rs2721138	T	C	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:71,109:0.61:180
chr8	145752900	rs11557085	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr8	145754073	.	GC	G	636.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=1.403;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr8	145756170	rs873884	G	A	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:300,154:0.34:454
chr8	145771211	rs2721161	C	G	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:13,87:0.87:100
chr8	145806681	rs2620647	A	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	145830757	rs4541972	A	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	145830894	rs5895822	CT	C	22162.73	.	AC=2;AF=1.00;AN=2;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=37.50;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,591:1.00:591
chr8	146028061	rs2958527	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	146033347	rs2976653	T	C	11419.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:1,426:1.00:427
chr8	146035691	rs111602026	A	G	7492.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:212,343:0.62:555
chr8	146036234	rs2958511	A	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	146068594	rs1735408	T	C	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	146107554	.	C	T	5522.77	.	AC=1;AF=0.500;AN=2;DP=850;set=Intersection	GT:AD:AF:DP	0/1:538,301:0.36:839
chr8	146115367	rs2735906	A	G	23676.77	.	AC=2;AF=1.00;AN=2;DB;DP=958;set=Intersection	GT:AD:AF:DP	1/1:1,933:1.00:934
chr8	146156247	rs3735789	C	A	4905.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:405,270:0.40:675
chr8	146157339	rs3735787	T	C	1898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-1.979;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:277,121:0.30:398
chr8	146171285	rs3824110	G	A	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:220,124:0.36:344
chr8	146171437	rs3735785	A	G	3232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.677;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:396,190:0.32:586
chr8	146203412	rs2979109	A	G	4279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=937;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-1.110;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:646,278:0.30:924
chr8	146220094	rs2978442	C	T	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	146221823	rs2978409	A	T	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	146222122	rs2978441	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	146229040	rs2978419	T	G	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	154795	rs2785333	T	C	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	277016	.	C	A	1234.77	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	289481	rs34722895	C	CAT	9744.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	316998	rs2296824	C	T	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr9	317195	rs10813355	G	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	317218	rs3818557	A	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	325817	rs2360277	T	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	334337	rs10970979	A	G	4323.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	376929	rs7020921	A	G	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	379965	rs10758420	T	C	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	382810	rs3739598	C	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	406805	rs35423045	G	GC	859.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	407227	rs4741867	A	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	415044	rs55709009	A	C	43.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	417918	rs7024113	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	417990	rs7027996	T	C	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	418272	rs7031432	T	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	426740	rs10974366	G	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	429577	rs10974393	A	G	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	429719	rs7854035	T	C	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	429940	rs16906738	T	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	432081	rs1329377	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	432140	rs34439675	CTT	C	1062.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=-0.542;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:12,43:0.78:55
chr9	432330	rs7036567	C	G	10324.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr9	432503	rs7046598	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.80;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	433697	rs7020380	T	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	433708	rs7041371	C	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	433978	rs2360712	A	G	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	439102	rs10733508	G	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	441827	rs10974467	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	441952	rs1887957	G	A	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	442030	rs1887958	C	T	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	449798	rs10491684	G	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	449956	rs12351520	C	T	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	450060	rs10121936	A	G	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	451923	rs371042110	ATATG	A	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	451945	.	G	GCATATACA	1042.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	451947	.	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	451949	.	G	A	1077.77	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.11;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	451975	.	ATATTTTTTTTTTTT	A	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-0.568;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr9	452149	rs16909246	G	C	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	732704	rs12551595	T	A	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	740769	rs138751582	CT	C	1230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.306;QD=2.67;ReadPosRankSum=1.048;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:282,179:0.39:461
chr9	742342	rs10733535	A	G	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	842315	rs56130013	AC	A	439.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	967981	rs279895	G	C	7473.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	977556	rs279891	C	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.23;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	990840	rs7021244	C	T	18242.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:1,692:1.00:693
chr9	1056959	rs17641078	G	C	16661.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr9	1057294	rs72703239	C	A	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	1057318	rs9140	A	G	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	2039793	rs62534884	A	C	7068.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:26,310:0.92:336
chr9	2073514	rs7864080	A	T	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	2161662	rs151176995	G	A	376.41	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	2161949	rs2274095	C	T	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	2622121	rs12379259	A	G	17135.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr9	2622134	rs34881325	C	T	17005.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr9	2622146	rs369552432	ACGGCGGCGG	A	13010.73	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr9	2622278	rs2219143	G	A	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	2717676	rs11793555	T	G	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	2717698	rs7029012	C	G	5571.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.69;ReadPosRankSum=2.188;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:2,142:0.99:144
chr9	2717922	rs10967705	C	G	10622.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr9	2718534	rs12237048	C	G	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.36;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	2810326	rs72694643	T	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	2820201	.	CA	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.035;QD=2.10;ReadPosRankSum=-2.339;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr9	3262803	rs635647	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	3263224	rs633893	T	C	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	3829188	rs16919730	G	A	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	3879693	rs4740742	C	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	3898509	rs10758532	A	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	3932521	rs587571	T	C	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	3932940	rs7873636	A	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	4117713	rs927315	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	4118208	rs806052	A	G	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr9	4285986	rs10758591	G	C	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	4490880	rs12002726	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	4544721	rs45518336	A	T	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	4561374	rs10974624	C	T	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	4561596	rs10974625	G	A	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	4561651	rs1805311	G	A	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	4566210	rs7022772	A	C	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	4576680	rs301430	T	C	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	4661752	rs62543897	G	A	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	4662369	rs301487	A	C	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	4666069	rs60279350	A	ATCTT	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	4679906	rs2295964	A	G	8052.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	4680014	rs2295965	A	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	4701841	rs71497545	GT	G	329.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	4706214	rs2181341	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	4718667	rs465514	A	T	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	4793254	rs841990	G	A	7866.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr9	4833436	rs463578	GC	AT	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	4834034	rs466547	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	4844507	rs295259	G	T	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	4850421	rs455864	C	G	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	4850436	rs462480	G	T	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	4850493	rs35181848	C	CTT	61	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	4860300	rs15583	A	G	3579.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	5335590	rs35426888	T	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	5335639	rs2146074	C	T	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	5467955	rs2297136	G	A	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	5534924	rs56072800	C	G	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr9	5557672	rs7854303	T	C	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	5656558	.	CT	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.360;QD=1.41;ReadPosRankSum=-2.572;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr9	5732532	.	G	GT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.602;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:94,21:0.18:115
chr9	5738545	rs61537045	CTT	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.918;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr9	5832849	.	G	A	7386.77	.	AC=2;AF=1.00;AN=2;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr9	5968416	rs3739649	A	G	8734.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr9	5969517	rs7030731	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	5988333	rs2291055	C	T	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	6007122	rs77310481	G	A	6347.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	6254694	rs7857724	A	C	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	6255881	rs1332290	T	G	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	6328947	rs3847262	T	C	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	6330915	rs1037885	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	6534845	rs2282160	T	C	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	6720859	rs13289146	A	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	6874931	.	TAAA	T	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.996;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr9	6875085	rs60286758	C	T	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	6986267	rs912207	T	G	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	6986291	rs3750488	C	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	6990548	rs35634202	ATT	A	1239.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.539;QD=17.46;ReadPosRankSum=-0.065;SOR=0.616;set=HC	GT:AD:AF:DP	1/1:18,53:0.75:71
chr9	7016001	rs818883	G	T	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	7046917	rs1417290	A	G	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	7105548	rs10758825	G	C	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	7105651	rs1407863	C	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	7170006	rs7022348	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	7798435	rs1254	C	T	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	7798518	rs4742410	G	C	8144.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr9	8338778	rs35311961	T	TA	467.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	8338847	rs143960430	C	CAGAGAGAGAGAGAG,CAGAGAGAGAGAGAGAG	1274.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=73;set=Intersection	GT:AF:DP	1/2:0.33,0.44:64
chr9	8340168	rs4742483	C	A	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	8376477	rs1566447	C	T	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	8436560	rs1359117	A	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	8436703	rs1359118	C	G	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	8451816	rs4742505	TT	AC	8342.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	8454413	rs10977121	A	G	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	8465598	rs2281747	A	G	8775.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:1,352:1.00:353
chr9	8470930	rs3215748	AG	A	5771.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	8492703	rs5896249	AT	A	289.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=0.325;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr9	8521244	rs3818346	C	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	8525217	rs35751005	AT	A	1168.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:7,69:0.91:76
chr9	8526505	.	G	GA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-0.259;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:85,28:0.25:113
chr9	12775861	rs139315731	T	TGGCGGCGGC	6207.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=1.476;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=-0.556;QD=22.09;ReadPosRankSum=0.193;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:23,258:0.92:281
chr9	12775889	rs3750501	A	G	8508.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.841;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=5.046;MLEAC=2;MLEAF=1.000;MQ=59.70;MQRankSum=-0.110;QD=24.88;ReadPosRankSum=0.790;SOR=1.632;set=HC	GT:AD:AF:DP	1/1:1,341:1.00:342
chr9	12821695	rs61755264	T	C	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr9	13109111	rs10732331	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	13112116	rs10809904	A	G	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	13125201	rs2297003	T	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	13126470	rs10738323	C	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	13165218	rs10960959	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	13175715	rs3831219	TGAG	T	1132.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	13192320	rs1331676	C	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	13206106	rs368811859	TA	T	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.334;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:96,41:0.30:137
chr9	14120655	rs6474818	A	G	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	14149993	rs76457858	A	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	14155769	rs12349255	T	C	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	14306944	rs4741362	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	14313712	rs2273933	T	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	14618856	rs3802482	C	T	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	14619168	rs10810187	A	G	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	14640055	rs6474849	C	T	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	14662260	rs17215796	A	G	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	14690419	rs10961672	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	14690447	rs2382477	G	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	14693270	rs71476227	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	14737506	rs10961689	T	G	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	14737616	rs10961690	A	G	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	14737743	rs10511596	C	A	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	14740300	rs2270528	A	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	14756318	rs57793294	C	CA,CAA	6145.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.292;QD=20.69;ReadPosRankSum=-0.938;SOR=0.775;set=HC	GT:AD:AF:DP	1/2:11,238,48:0.80,0.16:297
chr9	14756483	rs10810233	A	G	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	14759725	rs7045154	A	G	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	14770580	rs1874109	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	14774329	rs7018782	T	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	14775779	rs1874108	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	14775853	rs1032474	A	G	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	14801687	rs10738380	T	C	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	14806848	rs10810249	C	A	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	14819370	rs7023244	G	T	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr9	14841387	rs1552896	C	G	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	14868653	rs7856810	A	T	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	15000551	rs7029527	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	15017223	rs2222456	G	A	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	15017273	rs10961831	C	G	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	15183532	rs2057478	C	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	15188106	rs1407977	T	C	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	15190494	rs475932	A	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	15192720	rs566820	A	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	15267981	rs552693	G	C	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	15623473	.	GCA	G	82.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr9	15678995	rs7037893	C	A	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	15695418	rs1355172	G	A	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	15784496	rs2382540	C	G	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	15784631	rs1539172	A	G	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr9	15864506	rs770196	C	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	15882977	.	A	AGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT	50.92	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=25.46;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	15883263	rs809493	G	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	15922137	rs1328285	A	G	7586.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr9	15922325	rs2225181	A	T	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.661;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	16582890	rs35366915	G	GACAC,GACACAC	2752.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=105;set=Intersection	GT:AF:DP	1/2:0.32,0.59:87
chr9	16664871	rs35822374	T	TG	323.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	16685539	rs7046068	T	C	11685.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr9	16699287	rs10738447	C	T	10809.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.74;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	16699292	rs10738448	C	T	10346.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.61;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	16727698	rs1360285	G	A	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	16738269	rs7858914	G	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr9	16738307	rs7858709	A	C	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.63;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	16738312	rs7858712	A	G	5988.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=42.17;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	16738338	rs35475650	GA	G	3226.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:10,173:0.95:183
chr9	16738556	rs4007684	C	CTTTT	603.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=40.25;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	17135434	rs12003380	G	C	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	17143463	rs12004921	C	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=26.65;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	17143511	rs36086880	A	AG	518.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	17235563	rs3814137	C	A	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	17235642	rs67017076	AT	A	588.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr9	17236365	rs3814138	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	17236376	rs3814139	A	G	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	17332484	rs5896735	AT	A	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.147;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr9	17342383	rs1442527	C	T	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	17388331	rs17830246	C	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	17394996	rs3739489	T	C	9666.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr9	17409366	rs2780211	G	A	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	17457512	rs35399020	TA	T	614.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.88;QD=19.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	17464402	rs1442532	G	C	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	17579190	rs4961573	C	G	12569.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=45.54;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr9	17579198	rs4961574	T	G	13264.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=42.52;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr9	17579370	rs3739487	T	C	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	17747279	rs2031456	G	A	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	17761379	rs1886589	C	T	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	17775367	rs2209429	C	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	17781818	rs2224955	C	G	8924.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr9	17781935	rs2209431	G	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	18573360	rs13299349	G	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	18573918	rs13300372	G	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	18574406	rs1341069	G	C	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	18636119	.	ACT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=-1.981;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr9	18661848	rs41268977	T	G	148.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	18682026	rs16936967	T	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	18717903	rs530120	G	A	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	18718114	rs4977339	A	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	18718139	rs532101	C	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	18776840	rs1549986	A	C	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	18817246	rs1433809	A	C	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	18887753	rs731370	C	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	18889544	rs10963819	A	T	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	18889789	rs34099646	G	A	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	18890446	rs7026374	A	G	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	18907049	rs5896821	A	AT	3123.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	18907122	rs1327506	T	C	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	18950787	rs6475273	G	A	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	18950895	rs7021572	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	18950980	rs6475274	A	T	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	19056323	rs142212509	T	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	19056374	rs151203048	A	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	19076764	rs72696469	A	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	19080791	rs142706968	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	19086769	rs141382710	T	C	69.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	19116630	rs141685840	A	G	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	19120752	rs10963971	G	A	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	19120778	rs112315723	C	A	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	19123745	rs10963972	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	19295941	rs10757051	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	19326245	rs140989681	AT	A	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	19336169	rs10683145	G	GTA	133.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.30;ReadPosRankSum=-0.210;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr9	19341045	rs928128	A	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	19346594	rs34267952	T	G	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	19347204	rs2666801	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	19350980	rs2803125	C	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	19357276	rs10667709	C	CTTA	173.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	19369778	rs10964112	T	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.496;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr9	19371656	.	A	G	249.77	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	19372275	rs41270105	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	19550210	rs58063275	G	T	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	19550308	rs4977555	A	T	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	19573306	rs2148952	G	A	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	19573483	.	AACACACACACACAC	A	168.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.11;ReadPosRankSum=1.068;SOR=1.850;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr9	19576815	rs2247818	C	T	227.84	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	19576816	rs56172301	GGT	G	218.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	19576949	rs2383101	T	G	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	19619509	rs1885220	C	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	19622052	rs62563276	G	C	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	19622072	rs4977307	A	G	215.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	19622268	rs4977308	T	C	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	19786217	rs1536517	G	A	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	20354693	rs2301549	A	G	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	20354796	rs2301550	A	G	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	20448058	rs111349071	GT	G	842.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.357;QD=15.90;ReadPosRankSum=2.359;SOR=0.470;set=HC	GT:AD:AF:DP	1/1:4,49:0.92:53
chr9	20502096	rs6475450	G	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	20620575	rs2073855	G	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	20621901	rs376536186	CGT	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-1.649;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:136,17:0.11:153
chr9	20622064	rs71334542	C	CG	77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	20715312	rs56301631	T	C	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	20716311	rs77014292	C	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	20720599	rs4977898	A	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	20758306	rs7851363	T	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	20764870	rs10511687	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	20765097	rs7871811	A	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	20778631	rs7875153	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	20866974	rs7875872	C	G	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	20882117	rs7026225	T	C	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	20885240	rs2383156	G	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	20907333	rs11435123	G	GA	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=26.93;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	20932889	rs112589234	C	CT	123.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	20944558	rs12552707	G	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	20978312	rs4977616	A	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	20982503	rs4304410	T	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	20986265	.	AT	A	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=0.469;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr9	20990099	rs13301875	C	T	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	21006934	rs1134090	A	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	21026540	rs2275889	G	T	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	21026800	rs2275890	G	A	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	21031479	rs10964805	C	T	79.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	21166004	rs2939	A	G	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	21304803	rs10757212	G	A	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	21350603	rs76096785	T	C	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	21350620	rs2988573	G	A	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	21368097	rs653778	T	A	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	21815589	rs4007652	T	TAAAA	83.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=1.834;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr9	21816573	rs7023680	G	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	21816637	rs10114559	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	21816646	rs7023474	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	21816758	rs7023954	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	21818310	rs3928894	C	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	21838145	rs7868783	A	G	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	21968199	rs11515	C	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	22029547	rs564398	T	C	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	22447655	rs558612	T	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	22451031	rs563802	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	22452002	rs62574786	G	A	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr9	22452041	rs56665855	GTT	G	365.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.667;MLEAC=2;MLEAF=1.000;MQ=61.02;MQRankSum=0.789;QD=21.51;ReadPosRankSum=0.253;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:3,14:0.82:17
chr9	24545513	rs6475797	G	A	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	25677953	rs34498078	T	C	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	25678196	rs72631813	T	C	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	26984674	rs149434884	A	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	27009239	rs55784401	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	27061142	rs34615635	GGT	G	81.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr9	27061166	rs200975253	T	C	708.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	27168315	rs10511802	G	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	27168433	rs12349832	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	27172838	rs3739542	C	A	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	27173180	rs666478	C	T	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	27183463	rs682632	A	C	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	27185762	rs17834811	T	G	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	27192036	rs2224529	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	27192330	rs2252883	G	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	27220203	.	G	T	185.78	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	27228022	rs2273717	A	G	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	27284708	rs1057524	T	A	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	27289812	rs1980661	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	27289832	rs1980660	G	T	335.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	27290984	rs2383724	T	C	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	27296595	rs7044345	C	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	27296705	rs3824406	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	27330514	rs3739530	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	27330772	rs10555560	CTGTT	C	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.463;QD=30.86;ReadPosRankSum=-0.929;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:2,21:0.91:23
chr9	27378301	rs1330920	A	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	27455585	rs10757661	G	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	27524731	rs700785	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	27561465	rs3063748	A	ATGT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	27562352	rs2589050	T	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	27948975	rs113646467	C	T	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	28863459	rs13285849	A	T	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	28889060	rs7043805	C	G	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	32384825	rs882812	G	A	7230.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	32384843	rs913762	A	C	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	32405639	rs41298178	T	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	32418237	rs2026739	G	T	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	32427600	rs2375965	A	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	32431931	rs10970975	A	G	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	32435978	rs2068116	C	T	4453.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.124;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.51;ReadPosRankSum=1.627;SOR=0.579;set=HC	GT:AD:AF:DP	1/1:1,167:0.99:168
chr9	32436014	rs7022554	A	G	9025.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr9	32448745	rs10813817	T	C	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	32450187	rs12985	T	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	32459450	rs3205166	T	G	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	32466190	rs56377445	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	32466277	rs45589431	C	T	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	32466462	rs45460592	G	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	32473088	rs13295938	T	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	32480251	rs17217280	A	T	7847.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr9	32481500	rs71504272	T	TA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.28;ReadPosRankSum=0.235;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr9	32485529	rs59702635	CT	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.020;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.900;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr9	32491240	rs6476363	C	T	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	32492352	rs17289927	T	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	32498291	rs2777725	A	G	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr9	32525969	rs2777729	C	A	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	32526233	rs3739674	G	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	32551709	rs72712913	A	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	32552164	rs35002468	T	TCTC	1971.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	32552172	rs35415231	CA	C	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-1.246;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr9	32559114	rs10813835	C	T	111.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	32567655	rs67236328	T	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	32630472	rs10758145	T	C	7880.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.01;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	32631966	rs45559233	G	A	9234.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr9	32973709	.	CAA	C,CA	921.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.159;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.272;QD=14.18;ReadPosRankSum=-0.536;SOR=0.415;set=HC	GT:AD:AF:DP	1/2:5,24,36:0.37,0.55:65
chr9	32973777	rs34683066	C	T	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	32974372	rs4878522	C	T	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	32986032	rs200922655	AAAAAAAAACAAAAAAAAAAAC	A	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-0.510;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr9	32986248	rs7869475	T	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	32987451	rs884546	G	A	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	33001449	rs1197774	C	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr9	33026572	rs20583	T	C	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	33026638	rs2274769	G	A	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	33036550	rs2297215	A	G	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	33039024	rs7296	T	A	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	33047398	rs2274767	T	C	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	33053430	rs7041702	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	33056971	rs35445781	GA	G	1129.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr9	33062291	rs13290323	A	G	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	33104820	.	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.000;QD=2.45;ReadPosRankSum=2.319;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr9	33116238	rs34433922	AT	A	687.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.65;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	33264540	rs1071545	C	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	33270479	rs844239	A	G	155.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	33270748	rs831271	G	T	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	33290532	rs830576	A	G	11458.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.772;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=0.759;SOR=0.230;set=HC	GT:AD:AF:DP	1/1:1,439:1.00:440
chr9	33290688	rs4879682	G	C	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr9	33344252	rs642157	T	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	33354070	rs145934546	TTTTTA	T	4872.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	33369943	rs2230122	G	A	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	33385600	rs117066088	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-5.599;QD=1.51;ReadPosRankSum=0.057;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:29,4:0.12:33
chr9	33385602	rs145413647	A	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-5.509;QD=2.90;ReadPosRankSum=0.207;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr9	33385603	rs140943510	C	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-4.484;QD=2.73;ReadPosRankSum=-0.971;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr9	33386144	.	G	A	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.766;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=14.628;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-11.103;QD=10.43;ReadPosRankSum=-0.962;SOR=1.759;set=HC	GT:AD:AF:DP	0/1:117,49:0.30:166
chr9	33386146	rs76608797	C	A	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.758;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=15.678;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-10.968;QD=9.89;ReadPosRankSum=-0.980;SOR=1.744;set=HC	GT:AD:AF:DP	0/1:123,52:0.30:175
chr9	33386167	rs79172651	G	C	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:158,102:0.39:260
chr9	33386211	rs80148578	G	A	3349.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:192,181:0.49:373
chr9	33386226	rs78244036	T	C	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:176,190:0.52:366
chr9	33386243	rs76705820	C	T	3285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-6.250;QD=9.72;ReadPosRankSum=2.652;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:165,173:0.51:338
chr9	33386284	rs73478964	T	G	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:70,102:0.59:172
chr9	33386378	rs74462413	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-5.067;QD=1.98;ReadPosRankSum=2.183;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:88,12:0.12:100
chr9	33386387	rs77429065	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.958;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-5.012;QD=1.39;ReadPosRankSum=1.569;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:93,11:0.11:104
chr9	33386393	rs77837642	G	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.952;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=-5.366;QD=0.96;ReadPosRankSum=0.548;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:105,11:0.09:116
chr9	33386395	rs2484931	T	C	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	33386399	.	CA	TG	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.037;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=-5.383;QD=0.79;ReadPosRankSum=-0.191;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:112,11:0.09:123
chr9	33386465	rs74668961	A	G	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.618;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-11.682;QD=2.33;ReadPosRankSum=-1.092;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:205,30:0.13:235
chr9	33386469	rs78695486	C	T	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.339;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-12.162;QD=2.71;ReadPosRankSum=-1.962;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:205,35:0.15:240
chr9	33386510	rs77962308	C	T	1506.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.343;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-12.528;QD=6.88;ReadPosRankSum=4.980;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:170,49:0.22:219
chr9	33386511	rs72707424	A	G	1506.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.260;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-12.465;QD=6.94;ReadPosRankSum=5.188;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:168,49:0.23:217
chr9	33386526	rs79202054	G	A	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-11.179;QD=3.84;ReadPosRankSum=5.629;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:136,49:0.26:185
chr9	33395031	rs72707429	G	A	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=11.674;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-4.407;QD=10.67;ReadPosRankSum=1.748;SOR=1.724;set=HC	GT:AD:AF:DP	0/1:85,37:0.30:122
chr9	33395039	rs72707431	C	T	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=10.900;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-4.276;QD=10.26;ReadPosRankSum=0.525;SOR=1.630;set=HC	GT:AD:AF:DP	0/1:89,41:0.32:130
chr9	33395196	rs642636	A	G	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	33441710	rs377623543	CA	C	1106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.50;ReadPosRankSum=-0.098;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:8,46:0.85:54
chr9	33442952	rs2228332	G	A	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	33442986	rs2231231	A	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	33447306	rs517210	C	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	33447424	rs591810	C	G	8196.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr9	33447579	rs17553719	T	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	33465182	rs2785210	G	A	4182.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	33465651	rs560833	T	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	33466844	rs148429248	T	TGAG	2257.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	33467595	rs3860990	C	T	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	33467983	rs679644	G	A	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	33469427	rs10813983	G	A	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	33473893	rs2777744	T	G	12964.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=-0.834;SOR=0.343;set=HC	GT:AD:AF:DP	1/1:1,511:1.00:512
chr9	33541056	rs7035916	A	C	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	33541216	rs111814125	G	C	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-13.134;QD=2.47;ReadPosRankSum=-6.545;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:181,53:0.23:234
chr9	33541274	rs7036501	G	A	3532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=8.135;QD=14.19;ReadPosRankSum=-3.289;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:81,168:0.67:249
chr9	33548175	rs41304751	T	C	7995.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.39;QD=25.46;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr9	33555695	rs10971562	T	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	33558025	rs34748833	T	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	33568592	rs7046617	G	T	203.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	33568687	rs7032174	T	A	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	33573377	rs597219	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	33617691	rs147881110	TGGATGTAACACG	T	2491.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	33618028	rs855511	A	G	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	33618358	rs855512	A	G	11942.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr9	33618460	rs966447	A	T	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	33618497	rs2380835	G	A	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	33625185	rs36079164	C	T	11177.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.294;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;MQRankSum=-0.139;QD=26.18;ReadPosRankSum=0.769;SOR=0.407;set=HC	GT:AD:AF:DP	1/1:1,426:1.00:427
chr9	33794749	.	C	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.725;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-13.766;QD=0.54;ReadPosRankSum=-1.329;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:187,17:0.08:204
chr9	33794753	.	A	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.721;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=6.503;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-12.552;QD=0.98;ReadPosRankSum=-3.533;SOR=1.353;set=HC	GT:AD:AF:DP	0/1:203,28:0.12:231
chr9	33794789	.	G	A	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;ClippingRankSum=0.000;DP=308;ExcessHet=3.0103;FS=2.255;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-10.936;QD=2.00;ReadPosRankSum=-0.364;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:273,35:0.11:308
chr9	33794797	.	TGA	T	719.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-8.065;QD=2.43;ReadPosRankSum=-1.479;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:257,39:0.13:296
chr9	33794809	rs201061108	G	A	2744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-15.116;QD=8.97;ReadPosRankSum=1.642;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:225,81:0.26:306
chr9	33794811	.	GG	AT	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=0.641;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-10.819;QD=2.09;ReadPosRankSum=2.731;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:269,38:0.12:307
chr9	33794840	rs10117993	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=5.075;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-10.834;QD=0.78;ReadPosRankSum=-1.159;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:322,56:0.15:378
chr9	33794877	.	C	T	1502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DP=374;ExcessHet=3.0103;FS=0.468;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-11.999;QD=4.03;ReadPosRankSum=0.942;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:297,76:0.20:373
chr9	33794890	.	T	A	2098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-11.887;QD=5.98;ReadPosRankSum=1.126;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:277,74:0.21:351
chr9	33794894	.	T	C	2980.77	.	AC=1;AF=0.500;AN=2;DP=345;set=Intersection	GT:AD:AF:DP	0/1:240,104:0.30:344
chr9	33794903	.	TCTTTGAAACA	T	2954	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=1;MMLQ=27;NF=3;NR=21;QD=20;SC=GTCCCCTCCTTCTTTGAAACA;SbPval=0.15;Source=Platypus;TC=90;TCF=5;TCR=85;TR=24;WS=33794867;set=Platypus	GT:AD:AF:DP	1/0:66,24:0.27:90
chr9	33794906	.	TTGAAACA	T	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=27.114;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-3.527;QD=0.97;ReadPosRankSum=-1.116;SOR=2.822;set=HC	GT:AD:AF:DP	0/1:254,27:0.10:281
chr9	33794915	.	TTCC	T	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.665;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=19.765;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-3.934;QD=1.55;ReadPosRankSum=-1.133;SOR=2.495;set=HC	GT:AD:AF:DP	0/1:220,27:0.11:247
chr9	33794923	.	CTT	C	2491.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=222;set=Intersection	GT:AD:AF:DP	0/1:146,70:0.32:216
chr9	33794926	.	T	C	350.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.319;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=14.078;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-3.785;QD=1.67;ReadPosRankSum=-0.825;SOR=2.186;set=HC	GT:AD:AF:DP	0/1:187,23:0.11:210
chr9	33794927	.	T	C	1381.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-10.457;QD=6.87;ReadPosRankSum=0.217;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:155,46:0.23:201
chr9	33794929	.	A	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=14.143;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-3.572;QD=2.04;ReadPosRankSum=-1.563;SOR=2.160;set=HC	GT:AD:AF:DP	0/1:174,23:0.12:197
chr9	33794933	.	T	G	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.812;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=12.236;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-3.282;QD=2.22;ReadPosRankSum=-1.718;SOR=2.064;set=HC	GT:AD:AF:DP	0/1:167,22:0.12:189
chr9	33794942	.	A	G	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=5.480;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-2.906;QD=1.61;ReadPosRankSum=-1.668;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:131,15:0.10:146
chr9	33794975	.	A	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-5.630;QD=3.53;ReadPosRankSum=0.837;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr9	33794981	.	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-5.743;QD=5.16;ReadPosRankSum=-2.027;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr9	33795579	.	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.198;ClippingRankSum=0.000;DP=546;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-23.284;QD=0.10;ReadPosRankSum=-4.831;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:509,35:0.06:544
chr9	33795583	.	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;ClippingRankSum=0.000;DP=556;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-23.494;QD=0.64;ReadPosRankSum=-4.568;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:515,39:0.07:554
chr9	33795593	rs201140357	G	A	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-24.533;QD=2.00;ReadPosRankSum=-4.889;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:564,63:0.10:627
chr9	33795601	.	G	T	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DP=691;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-25.831;QD=3.03;ReadPosRankSum=-5.469;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:601,89:0.13:690
chr9	33795603	.	G	C	2325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DP=705;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-25.746;QD=3.30;ReadPosRankSum=-5.504;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:609,95:0.13:704
chr9	33795613	.	C	T	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.000;DP=773;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-26.945;QD=3.53;ReadPosRankSum=-3.471;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:658,114:0.15:772
chr9	33795622	.	T	C	2921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DP=820;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-27.382;QD=3.57;ReadPosRankSum=-0.356;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:698,121:0.15:819
chr9	33795624	.	A	C	2863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DP=822;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-27.550;QD=3.49;ReadPosRankSum=0.384;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:701,120:0.15:821
chr9	33795638	.	C	T	3256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DP=876;ExcessHet=3.0103;FS=2.589;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-28.104;QD=3.73;ReadPosRankSum=4.251;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:743,131:0.15:874
chr9	33795640	.	ACCC	A	3247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DP=894;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-28.275;QD=3.64;ReadPosRankSum=4.720;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:760,132:0.15:892
chr9	33795646	.	C	CAA	3541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DP=877;ExcessHet=3.0103;FS=2.610;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-28.002;QD=4.05;ReadPosRankSum=5.320;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:742,133:0.15:875
chr9	33795652	.	T	C	3611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.426;ClippingRankSum=0.000;DP=871;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-27.257;QD=4.16;ReadPosRankSum=4.798;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:723,146:0.17:869
chr9	33795703	rs370216620	C	T	4180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=2.176;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-22.881;QD=6.62;ReadPosRankSum=-2.105;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:489,143:0.23:632
chr9	33795707	rs373461727	C	G	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-22.465;QD=2.44;ReadPosRankSum=-1.881;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:454,128:0.22:582
chr9	33795731	.	A	G	1959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-18.317;QD=5.27;ReadPosRankSum=-1.393;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:298,74:0.20:372
chr9	33795735	.	A	T	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-18.205;QD=5.22;ReadPosRankSum=-0.176;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:275,62:0.18:337
chr9	33795739	.	C	T	1606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DP=317;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-17.632;QD=5.08;ReadPosRankSum=0.157;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:259,57:0.18:316
chr9	33795762	.	C	T	488.77	.	AC=1;AF=0.500;AN=2;DP=149;set=Intersection	GT:AD:AF:DP	0/1:123,25:0.17:148
chr9	33795775	.	C	T	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-8.973;QD=4.28;ReadPosRankSum=0.049;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:72,17:0.19:89
chr9	33796660	.	T	C	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.968;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=14.064;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-11.147;QD=4.45;ReadPosRankSum=-4.312;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:213,41:0.16:254
chr9	33796672	rs77765166	T	C	1770.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.676;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=11.209;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-11.061;QD=6.35;ReadPosRankSum=-3.022;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:221,58:0.21:279
chr9	33796673	rs76740888	G	A	1806.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=9.500;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-11.120;QD=6.27;ReadPosRankSum=-2.822;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:227,61:0.21:288
chr9	33796690	rs143332708	TGAG	T	9553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.644;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=11.447;QD=26.84;ReadPosRankSum=3.575;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:118,238:0.67:356
chr9	33796799	rs200709040	A	T	4326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.717;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-20.259;QD=8.23;ReadPosRankSum=-0.801;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:391,135:0.26:526
chr9	33796802	.	TAAGTG	T	2911.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.678;ClippingRankSum=0.000;DP=509;ExcessHet=3.0103;FS=8.327;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-17.045;QD=5.78;ReadPosRankSum=-4.725;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:405,99:0.20:504
chr9	33796811	rs200466488	G	A	2810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.866;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=8.330;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-16.971;QD=6.11;ReadPosRankSum=-4.250;SOR=1.369;set=HC	GT:AD:AF:DP	0/1:370,90:0.20:460
chr9	33796889	.	A	G	1620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.405;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=15.905;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-5.397;QD=14.34;ReadPosRankSum=0.354;SOR=0.126;set=HC	GT:AD:AF:DP	0/1:64,49:0.43:113
chr9	33796896	.	T	C	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.106;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-4.462;QD=16.32;ReadPosRankSum=1.252;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:56,38:0.40:94
chr9	33796898	.	G	A	1398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-4.142;QD=15.37;ReadPosRankSum=1.578;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:55,36:0.40:91
chr9	33796904	.	G	A	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-2.750;QD=14.89;ReadPosRankSum=2.016;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:48,30:0.38:78
chr9	33797917	.	T	C	1774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.409;ClippingRankSum=0.000;DP=892;ExcessHet=3.0103;FS=20.859;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-29.408;QD=1.99;ReadPosRankSum=-6.700;SOR=2.942;set=HC	GT:AD:AF:DP	0/1:796,94:0.11:890
chr9	33797928	.	G	GCT	3017.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.230;ClippingRankSum=0.000;DP=1015;ExcessHet=3.0103;FS=14.884;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-28.682;QD=2.98;ReadPosRankSum=-6.609;SOR=2.075;set=HC	GT:AD:AF:DP	0/1:882,131:0.13:1013
chr9	33797930	.	GAC	G	3632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.897;ClippingRankSum=0.000;DP=1043;ExcessHet=3.0103;FS=14.886;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-28.429;QD=3.49;ReadPosRankSum=-6.053;SOR=2.227;set=HC	GT:AD:AF:DP	0/1:902,138:0.13:1040
chr9	33797951	rs150316320	A	C	6699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.816;ClippingRankSum=0.000;DB;DP=1225;ExcessHet=3.0103;FS=3.412;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-31.322;QD=5.49;ReadPosRankSum=-4.873;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:1003,218:0.18:1221
chr9	33797962	rs374178684	A	G	8516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.614;ClippingRankSum=0.000;DB;DP=1327;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-32.257;QD=6.45;ReadPosRankSum=-3.683;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:1046,275:0.21:1321
chr9	33798017	rs855581	A	G	19916.77	.	AC=2;AF=1.00;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	1/1:4,751:0.99:755
chr9	33798112	.	C	T	466.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:72,23:0.24:95
chr9	33798574	rs201773718	G	A	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.488;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=6.903;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-18.286;QD=1.25;ReadPosRankSum=-3.393;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:292,61:0.17:353
chr9	33798596	rs377148991	T	C	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.576;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=3.483;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-17.307;QD=2.91;ReadPosRankSum=1.789;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:263,83:0.24:346
chr9	33798633	rs370619518	T	C	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.723;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-20.662;QD=3.20;ReadPosRankSum=4.036;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:343,117:0.25:460
chr9	33886999	.	AT	A	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=0.386;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr9	33900109	rs10971774	C	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	33912102	rs148101204	GT	G	2065.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:11,119:0.92:130
chr9	33917348	rs141897963	AAC	A	197.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	33922626	rs10971793	A	G	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr9	33924312	rs10971794	G	A	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	33927899	rs307692	G	A	4190.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	33928074	rs147678695	A	AC	977.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	33932688	rs307648	G	C	3723.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=1.644;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:2,144:0.99:146
chr9	33934271	rs56274755	T	C	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	33935736	rs307652	A	G	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	33938793	rs61353103	CA	C	124.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=0.316;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr9	33939062	rs2307692	TCC	T	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	33941759	rs307658	T	C	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	33944730	rs72727350	A	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	33948652	rs307654	T	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	33960778	.	C	CA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.858;QD=0.62;ReadPosRankSum=1.690;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:181,43:0.19:224
chr9	33969352	rs307675	T	C	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	33986731	rs148986402	ATT	A	23227.73	.	AC=2;AF=1.00;AN=2;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=44.16;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,526:1.00:526
chr9	33988919	rs72727392	G	A	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	33998923	rs41312808	A	C	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	34011803	rs7029112	C	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	34011835	rs7029122	C	T	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	34089395	rs2296897	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	34096597	rs7857551	G	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	34096873	rs10971910	T	C	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	34107504	rs1378	C	T	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	34127211	rs10971940	A	G	7576.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr9	34178974	rs9650705	G	A	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	34211942	rs1556439	T	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	34220855	rs41313794	G	A	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	34242192	rs10972015	C	T	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	34269386	rs141274403	ACTT	A	9852.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	34272085	rs72731297	T	C	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	34286486	rs6476442	G	T	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	34310927	rs10972048	T	C	8756.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr9	34343033	rs143309441	G	GA	841.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=-0.372;SOR=0.358;set=HC	GT:AD:AF:DP	1/1:7,45:0.87:52
chr9	34370701	rs58832809	TG	T	963.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	34372783	rs4879781	G	C	6793.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr9	34372873	rs4879782	C	G	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	34373041	rs10972084	C	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	34382726	rs3808876	A	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	34385533	.	CA	C	115.73	.	AC=1;AF=0.500;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=8.27;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr9	34402173	rs10738926	A	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	34402663	rs41274849	C	T	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	34406801	rs72019483	C	CT	63.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=7.99;ReadPosRankSum=-1.068;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:2,6:0.75:8
chr9	34407041	rs12376650	C	T	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	34407204	rs10119711	T	C	5143.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.717;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.61;ReadPosRankSum=-0.763;SOR=0.302;set=HC	GT:AD:AF:DP	1/1:1,208:1.00:209
chr9	34407331	rs10972095	G	A	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	34407423	rs10116555	C	T	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=25.02;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	34407572	rs7847950	G	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	34459025	rs11547035	G	T	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	34487782	rs4878572	C	T	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	34500595	rs4878575	G	T	256.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	34568857	rs41274859	G	A	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	34614681	rs12352811	G	C	7938.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.145;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr9	34615896	rs144108229	C	CA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.132;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:65,19:0.23:84
chr9	34622389	rs3808869	A	C	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	34623338	rs10972173	A	G	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr9	34627568	rs74857127	G	T	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	34635598	rs4879809	T	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	34646572	rs142496102	CCAGT	C	1043.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	34647802	rs41274865	G	C	18190.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr9	34648020	rs2277202	G	A	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	34648088	rs41274867	G	A	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	34649442	rs2070074	A	G	13155.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr9	34650279	.	C	CAAAAAAAAAAAAAAA	226.82	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.36;QD=56.70;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	34655436	rs2812357	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	34657663	rs1104748	T	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	34658421	rs1104749	T	A	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	34661549	rs56079949	G	GGATGGATGGACA	889.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=46.83;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	34661994	rs11575584	G	A	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	34665274	rs41314592	T	C	6165.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	34723181	rs2297132	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	34723744	rs4878588	C	A	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	34723935	rs2297134	C	T	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.11;QD=25.63;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	34724059	rs117821239	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.24;QD=28.66;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	34724241	rs3739881	C	A	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr9	34724786	rs72617336	G	A	5454.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.33;MQRankSum=-1.178;QD=24.68;ReadPosRankSum=-0.863;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:2,219:0.99:221
chr9	34724796	rs150496452	T	A	9059.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.21;QD=44.85;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	34724987	rs201739024	A	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.54;MQRankSum=-6.229;QD=0.39;ReadPosRankSum=0.382;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:491,79:0.14:570
chr9	34725047	rs78716275	C	T	7489.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:152,337:0.69:489
chr9	34725069	rs114933270	T	A	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.108;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=3.679;MLEAC=1;MLEAF=0.500;MQ=53.12;MQRankSum=-8.315;QD=2.67;ReadPosRankSum=3.990;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:251,75:0.23:326
chr9	34725742	rs62547039	T	C	8981.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr9	34726204	rs521574	G	A	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.67;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	34832919	rs12377823	C	T	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.92;QD=24.91;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	34833080	rs138460400	TC	T	3060.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:91,94:0.51:185
chr9	34834103	rs200572923	T	C	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.00;QD=21.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	34834494	rs77822083	C	T	4933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=53.93;MQRankSum=-0.609;QD=8.39;ReadPosRankSum=0.928;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:324,264:0.45:588
chr9	34834880	rs112468216	A	C	3169.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.01;MQRankSum=-0.458;QD=25.98;ReadPosRankSum=0.430;SOR=0.383;set=HC	GT:AD:AF:DP	1/1:1,121:0.99:122
chr9	34834937	rs202203144	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.90;QD=28.85;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	34835273	rs521552	A	C	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:302,206:0.41:508
chr9	34835861	rs924566	C	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	34836905	rs3802426	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	35042785	rs72722952	C	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	35043291	rs615474	G	T	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	35060302	rs684562	T	C	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	35060746	rs562381	A	G	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	35060955	rs2258240	T	C	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	35061693	rs11272867	G	GACAGTACACAA	6494.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	35062972	rs514492	C	T	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	35066579	rs35504855	T	TA	289.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-0.127;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr9	35068201	rs10972300	C	T	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	35077203	rs17885726	G	A	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	35077441	rs554098	T	C	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	35079361	rs504082	G	T	14321.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr9	35089048	rs556766	A	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	35090782	rs505297	A	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	35091880	rs10814196	C	T	10806.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr9	35100002	rs664357	T	C	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	35100569	rs586017	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	35101383	rs34240345	GCA	G	5038.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	35101870	rs693325	C	G	4517.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	35107858	rs7039828	C	T	8196.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr9	35231123	rs200386049	T	A	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	35231244	rs371483057	T	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	35236577	rs202003955	G	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	35291196	.	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	35364353	rs12352480	G	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	35364644	rs34638007	A	ATG	337.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.12;ReadPosRankSum=1.385;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr9	35375069	rs3780730	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	35377772	rs2282001	G	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	35381504	rs2281999	C	T	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	35382559	.	ATT	A	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.274;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr9	35384116	rs373999584	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	35385666	rs377203751	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	35400272	rs4878613	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	35403554	rs201643678	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.31;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	35546735	rs1535422	A	G	8382.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr9	35555823	rs946483	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	35556250	rs870978	G	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	35556527	rs150786704	A	ACCTCTAAGTGCTGGCTGGGC	319.76	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	35559369	rs4879906	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	35559905	rs12338773	T	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	35561912	rs143266743	CCCCACCCT	C	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	35562328	rs5897609	TACAA	T	3625.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	35562549	rs755774	G	A	5940.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	35610523	rs71940749	CCCCTGCTCTGAGT	C	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	35610912	rs4879913	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	35616583	rs2095858	A	T	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	35660990	rs1339374	A	G	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	35661243	rs35234337	C	T	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	35662251	rs2297879	T	C	7081.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	35664624	rs1361338	C	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	35677702	rs2857801	T	A	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	35679061	rs2857802	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	35682296	rs11998	T	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	35683240	rs149115565	T	TG	7672.73	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:29,304:0.91:333
chr9	35689949	rs3793538	AAA	TTT	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	35704898	rs3215701	GA	G	829.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	35705759	rs11541908	G	A	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.09;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr9	35707338	rs55810625	G	A	6566.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	35707677	rs56221655	G	A	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	35712003	rs2295795	G	A	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	35712823	rs2249133	G	A	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	35720626	.	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.273;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr9	35722282	rs2295797	T	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	35724448	rs41277065	G	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	35739115	rs3833700	G	GC	4553.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	35739876	rs3750434	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	35751221	rs1570248	C	T	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr9	35752252	rs1570249	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	35799456	.	CAG	C	345	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=2;MGOF=22;MMLQ=24;MQ=59.51;NF=3;NR=3;PP=345;QD=60.0;SC=CACACACACGCAGAGAGAGAG;SbPval=0.6;Source=Platypus;TC=17;TCF=9;TCR=8;TR=6;WE=35799465;WS=35799446;set=Platypus	GT:AD:AF:DP	0/1:11,6:0.35:17
chr9	35825413	rs4879930	C	T	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	35829390	rs2381409	C	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	35834942	rs2236291	T	G	3536.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.832;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.39;ReadPosRankSum=1.014;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:1,144:0.99:145
chr9	35841783	rs2236293	G	A	8186.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.49;ReadPosRankSum=-0.787;SOR=0.367;set=HC	GT:AD:AF:DP	1/1:1,308:1.00:309
chr9	35845929	rs7848557	A	C	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	35906471	rs76452347	C	T	9819.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=38.97;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr9	35906519	rs79284865	G	A	12023.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=36.44;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr9	35906601	.	C	CCCACCACACCCCTCACCACACCCCTCACCACCACCACCACCACCACCACCCCCACCACACCCCTCACCACCTCCACCACCACCACCACCACCA	18303.73	.	AC=2;AF=1.00;AN=2;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.37;QD=41.32;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:4,439:0.99:443
chr9	36063743	rs942478	C	G	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	36112494	.	T	C	881.77	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	36151164	rs2277172	G	A	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	36216324	.	ATG	A	149.73	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr9	36263435	rs62541786	T	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	36276857	rs7875447	A	G	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	36353359	.	G	GTA	226.77	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	36369646	rs59794829	CAA	C	2429.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.00;ReadPosRankSum=-0.883;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:4,86:0.96:90
chr9	36372737	rs12001805	C	A	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	36378901	rs35905528	C	CT	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.842;QD=11.22;ReadPosRankSum=0.758;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr9	36599297	rs34715003	CA	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=2.493;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr9	36669228	rs3780133	C	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr9	36674842	rs2274473	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	36840623	rs3780135	G	A	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	36864066	rs4378045	G	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	36864119	rs4289895	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	36882264	.	TAC	T	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.057;QD=3.04;ReadPosRankSum=-0.694;SOR=1.436;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr9	37305829	.	G	GAT	81	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=0;NR=4;PP=81;QD=22.0;SC=TACTCCGTGAGATATATATAT;SbPval=1.0;Source=Platypus;TC=23;TCF=0;TCR=23;TR=4;WE=37305837;WS=37305819;set=Platypus	GT:AD:AF:DP	0/1:19,4:0.17:23
chr9	37422656	rs4878690	C	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=27.16;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	37422880	rs35891798	CG	C	1540.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	37426524	rs2736664	C	T	9018.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,359:1.00:359
chr9	37429661	rs309459	A	G	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	37429814	rs309458	A	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	37432264	rs309455	T	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	37436632	rs146487314	C	CCT	11560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.509;QD=25.58;ReadPosRankSum=0.872;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:68,384:0.85:452
chr9	37441650	rs17502738	T	C	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	37441808	rs309450	A	G	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	37486916	rs913278	G	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	37489232	.	C	CA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-1.006;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr9	37503124	rs7047823	G	A	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	37521777	rs35979885	G	A	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	37536998	rs927930	C	T	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	37537557	rs7044153	G	A	7344.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr9	37592143	rs73441369	A	T	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	37592452	rs7021977	G	A	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr9	37708307	rs2296555	A	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	37715574	rs1952126	G	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	37715724	rs1952125	T	G	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	37729786	rs1359590	C	T	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	37732142	rs7035345	T	C	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	37737283	rs2296552	A	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	37740637	rs2281872	T	C	5883.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	37745413	rs3747541	G	A	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	37769811	rs10973531	T	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	37782111	rs7158	C	T	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	37800406	rs34106593	GA	G	947.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.799;QD=13.74;ReadPosRankSum=0.331;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:7,62:0.90:69
chr9	37948724	rs3827519	T	C	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	37974743	rs1138374	T	C	7200.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	38015646	rs7047952	C	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	38016158	rs17847953	C	T	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	38016247	rs7037371	T	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	38068451	rs112858544	T	C	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	38068532	rs3750444	A	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	38395940	rs2228094	T	C	8540.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr9	38396065	rs2073478	G	T	10522.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr9	38396502	rs4878199	G	A	5801.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	38397355	rs3043	G	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	38411345	rs12377125	A	G	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	38414022	rs72447808	CCT	C	2251.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=42.49;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	38414030	.	T	TCACACACACACA,TCACACACACACACA	3081.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.46;QD=53.13;SOR=3.306;set=HC	GT:AD:AF:DP	1/2:0,22,36:0.38,0.62:58
chr9	38414067	rs12375529	G	T	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=24.68;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr9	38423826	rs7039990	T	A	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.81;SOR=1.791;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	38571214	rs3045002	T	TACA	4731.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;MQ=59.89;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	38571976	rs140529454	T	TTAAA	1734.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=49.56;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	38571986	rs55960030	C	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.29;QD=42.53;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	38572108	rs148136894	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	38573141	rs1974262	T	A	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	38586130	rs1415581	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.56;QD=27.67;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	38588602	rs2799163	T	C	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	38595886	rs2996347	T	C	11084.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr9	38603131	rs3005823	G	A	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	38603140	rs11377377	A	AT	3022.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	38615698	rs1832313	C	T	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.01;QD=24.17;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	38621995	rs10758509	C	T	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	39177335	.	A	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.827;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=42.812;MLEAC=1;MLEAF=0.500;MQ=51.65;MQRankSum=-8.153;QD=0.85;ReadPosRankSum=-2.637;SOR=5.440;set=HC	GT:AD:AF:DP	0/1:190,26:0.12:216
chr9	40503085	rs139489532	A	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.07;QD=26.48;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	40503105	rs201003096	G	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.12;QD=27.46;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	43816630	.	C	CT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=40.28;MQRankSum=0.719;QD=3.63;ReadPosRankSum=-2.405;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr9	43816656	rs199925161	T	C	2189.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=7.669;MLEAC=2;MLEAF=1.000;MQ=42.76;MQRankSum=-1.689;QD=28.81;ReadPosRankSum=-0.137;SOR=3.198;set=HC	GT:AD:AF:DP	1/1:1,75:0.99:76
chr9	43818062	rs78142446	T	A	12258.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr9	43860959	rs145957320	G	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr9	44175535	rs55633393	T	C	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=54.61;MQRankSum=1.023;QD=11.95;ReadPosRankSum=-0.716;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:45,63:0.58:108
chr9	65602571	rs62561574	C	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.738;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-2.076;QD=0.31;ReadPosRankSum=-1.803;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:171,26:0.13:197
chr9	66457014	.	C	T	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.21;MQRankSum=-7.227;QD=12.92;ReadPosRankSum=-1.110;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:68,37:0.35:105
chr9	66457016	rs10436128	C	T	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.18;MQRankSum=2.251;QD=4.47;ReadPosRankSum=0.163;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:88,19:0.18:107
chr9	66457019	rs7040398	G	A	3163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.41;MQRankSum=-6.890;QD=26.81;ReadPosRankSum=1.105;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:40,78:0.66:118
chr9	66457027	rs76122331	T	A	3459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-7.387;QD=26.01;ReadPosRankSum=1.765;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:48,85:0.64:133
chr9	66457030	.	T	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=3.828;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-2.071;QD=1.91;ReadPosRankSum=2.926;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:124,16:0.11:140
chr9	66457040	.	C	A	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=0.623;QD=2.48;ReadPosRankSum=2.246;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:143,24:0.14:167
chr9	66457051	rs79307166	G	C	4532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-9.694;QD=20.60;ReadPosRankSum=2.898;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:97,123:0.56:220
chr9	66457076	rs76994164	T	C	3529.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:200,120:0.38:320
chr9	66457077	.	T	C	771.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-10.773;QD=2.37;ReadPosRankSum=3.625;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:285,40:0.12:325
chr9	66457092	.	G	T	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-3.979;QD=2.27;ReadPosRankSum=-1.851;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:348,90:0.21:438
chr9	66457096	.	CTGA	C	2954	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=1;MGOF=138;MMLQ=23;MQ=48.83;NF=72;NR=59;PP=2954;QD=20;SC=AACTCGGTGTCTGAGGGGTTC;SbPval=0.22;Source=Platypus;TC=207;TCF=97;TCR=110;TR=131;WE=66457137;WS=66457082;set=Platypus	GT:AD:AF:DP	1/0:76,131:0.63:207
chr9	66457099	.	AG	A	2963	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=5;HapScore=1;MGOF=138;MMLQ=26;MQ=48.81;NF=69;NR=63;PP=2963;QD=20;SC=TCGGTGTCTGAGGGGTTCTGT;SbPval=0.23;Source=Platypus;TC=208;TCF=94;TCR=114;TR=132;WE=66457137;WS=66457082;set=Platypus	GT:AD:AF:DP	1/0:76,132:0.63:208
chr9	66457112	rs113087405	G	A	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-1.477;QD=3.09;ReadPosRankSum=-2.456;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:389,62:0.14:451
chr9	66457126	.	TGC	T	1478.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DP=513;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-0.508;QD=2.89;ReadPosRankSum=0.817;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:444,68:0.13:512
chr9	66457127	rs73447819	G	A	3768.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:379,127:0.25:506
chr9	66457129	.	A	ATG	1496.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DP=516;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-0.393;QD=2.91;ReadPosRankSum=0.781;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:447,68:0.13:515
chr9	66457151	rs78939328	G	C	6726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-6.540;QD=13.27;ReadPosRankSum=1.840;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:323,184:0.36:507
chr9	66457161	rs139907210	A	G	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.118;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=5.016;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=4.099;QD=0.72;ReadPosRankSum=0.019;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:386,65:0.14:451
chr9	66457169	rs138400587	AGAG	A	5646.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:268,152:0.36:420
chr9	66457173	.	GGA	G	1299.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.538;ClippingRankSum=0.000;DP=445;ExcessHet=3.0103;FS=4.165;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-7.316;QD=3.48;ReadPosRankSum=0.048;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:317,56:0.15:373
chr9	66457178	.	G	C	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=0.000;DP=405;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-8.056;QD=2.99;ReadPosRankSum=1.657;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:349,56:0.14:405
chr9	66457184	.	G	T	2065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DP=392;ExcessHet=3.0103;FS=6.143;MLEAC=1;MLEAF=0.500;MQ=56.21;MQRankSum=-3.050;QD=5.27;ReadPosRankSum=1.868;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:319,73:0.19:392
chr9	66457189	rs2874584	C	T	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-0.866;QD=4.53;ReadPosRankSum=0.806;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:306,62:0.17:368
chr9	66457192	.	TAGAGAGAG	T	2991	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MMLQ=22;NF=24;NR=141;PP=2991;QD=20;SC=GAGACAGCGATAGAGAGAGAG;SbPval=0.53;Source=Platypus;TC=183;TCF=27;TCR=156;TR=165;WE=66457242;set=Platypus	GT:AD:AF:DP	1/0:18,165:0.90:183
chr9	66457193	.	A	T	2097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.160;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=6.130;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-2.329;QD=5.54;ReadPosRankSum=-0.137;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:306,73:0.19:379
chr9	66457200	.	G	C	1821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=6.684;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-1.809;QD=5.10;ReadPosRankSum=-0.228;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:293,64:0.18:357
chr9	66457204	.	G	C	1137.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.012;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=5.606;MLEAC=1;MLEAF=0.500;MQ=55.84;MQRankSum=-8.587;QD=3.48;ReadPosRankSum=5.226;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:279,48:0.15:327
chr9	66457205	.	A	AAGGGGGGAG	1632.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DP=353;ExcessHet=3.0103;FS=6.930;MLEAC=1;MLEAF=0.500;MQ=55.84;MQRankSum=-1.458;QD=4.63;ReadPosRankSum=-0.183;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:293,60:0.17:353
chr9	66457206	.	G	C	463.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=5.576;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-0.634;QD=1.53;ReadPosRankSum=1.901;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:270,34:0.11:304
chr9	66457209	.	AG	A	1476.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.447;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=6.143;MLEAC=1;MLEAF=0.500;MQ=54.89;MQRankSum=-8.197;QD=4.26;ReadPosRankSum=5.590;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:291,56:0.16:347
chr9	66457211	.	ACAGAAAAG	A	1585.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.135;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=6.309;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=-7.809;QD=5.07;ReadPosRankSum=5.644;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:257,56:0.18:313
chr9	66457212	rs57585228	C	G	250.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=4.899;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=0.815;QD=0.86;ReadPosRankSum=-2.624;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:264,28:0.10:292
chr9	66457216	rs150998016	A	G	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-2.641;QD=7.57;ReadPosRankSum=-2.473;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:216,66:0.23:282
chr9	66457228	.	A	C	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=5.387;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=-7.361;QD=5.43;ReadPosRankSum=4.698;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:223,53:0.19:276
chr9	66457231	rs140644333	G	GAC	1801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.16;MQRankSum=-1.263;QD=6.88;ReadPosRankSum=-1.025;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:206,56:0.21:262
chr9	66457233	.	G	C	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=2.626;MLEAC=1;MLEAF=0.500;MQ=53.93;MQRankSum=-7.335;QD=6.35;ReadPosRankSum=3.760;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:206,55:0.21:261
chr9	66457237	.	G	A	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.368;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=7.233;MLEAC=1;MLEAF=0.500;MQ=53.62;MQRankSum=-0.761;QD=1.72;ReadPosRankSum=-0.757;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:218,32:0.13:250
chr9	66457253	.	A	C	2684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=6.405;MLEAC=1;MLEAF=0.500;MQ=51.88;MQRankSum=-7.887;QD=14.75;ReadPosRankSum=-0.202;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:104,78:0.43:182
chr9	66457259	.	G	T	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.96;MQRankSum=5.147;QD=2.39;ReadPosRankSum=-2.227;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:227,36:0.14:263
chr9	66457265	.	C	A	2173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=50.33;MQRankSum=-4.866;QD=8.52;ReadPosRankSum=-0.273;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:186,69:0.27:255
chr9	66457267	.	C	G	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=50.39;MQRankSum=4.643;QD=2.27;ReadPosRankSum=-2.135;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:218,29:0.12:247
chr9	66457270	.	G	A	2186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.500;MQ=50.31;MQRankSum=-4.853;QD=8.82;ReadPosRankSum=0.207;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:183,65:0.26:248
chr9	66457278	.	G	T	2045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=2.860;MLEAC=1;MLEAF=0.500;MQ=49.84;MQRankSum=-4.257;QD=8.78;ReadPosRankSum=0.311;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:170,63:0.27:233
chr9	66457310	rs75999199	T	G	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.634;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.50;MQRankSum=-3.757;QD=5.64;ReadPosRankSum=1.240;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:138,37:0.21:175
chr9	66457313	rs79959518	G	A	2062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=7.019;MLEAC=1;MLEAF=0.500;MQ=50.45;MQRankSum=-5.505;QD=12.13;ReadPosRankSum=1.950;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:110,60:0.35:170
chr9	66457317	rs77524857	C	T	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.67;MQRankSum=-3.593;QD=4.87;ReadPosRankSum=1.335;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:145,32:0.18:177
chr9	66457324	rs80001863	G	A	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=50.87;MQRankSum=-3.634;QD=4.70;ReadPosRankSum=-0.119;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:145,30:0.17:175
chr9	66457330	.	G	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=10.111;MLEAC=1;MLEAF=0.500;MQ=51.06;MQRankSum=-3.227;QD=1.10;ReadPosRankSum=0.550;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:156,20:0.11:176
chr9	66457345	.	GCT	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=9.929;MLEAC=1;MLEAF=0.500;MQ=51.37;MQRankSum=-2.613;QD=0.32;ReadPosRankSum=-0.679;SOR=1.363;set=HC	GT:AD:AF:DP	0/1:158,15:0.09:173
chr9	66457388	rs1809739	T	G	2966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=53.35;MQRankSum=-12.907;QD=12.90;ReadPosRankSum=-1.509;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:113,117:0.51:230
chr9	66457399	rs78461570	T	G	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.96;MQRankSum=-5.668;QD=1.65;ReadPosRankSum=-2.440;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:199,45:0.18:244
chr9	66457465	rs11262297	T	G	3689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.617;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-11.164;QD=12.18;ReadPosRankSum=2.217;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:198,105:0.35:303
chr9	66457475	rs55747937	C	T	4078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=6.654;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-10.619;QD=12.14;ReadPosRankSum=0.411;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:210,126:0.38:336
chr9	66457535	rs74360065	T	C	4413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.437;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=10.128;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-2.218;QD=7.76;ReadPosRankSum=-1.583;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:430,139:0.24:569
chr9	66457549	rs77706622	A	G	5088.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:493,155:0.24:648
chr9	66457562	rs79475537	C	T	3238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.354;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=5.824;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=5.694;QD=4.84;ReadPosRankSum=3.121;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:552,117:0.17:669
chr9	66457565	.	G	C	3238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DP=673;ExcessHet=3.0103;FS=5.856;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=5.770;QD=4.84;ReadPosRankSum=2.882;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:551,118:0.18:669
chr9	66457585	rs78196222	G	T	7797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=5.308;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-0.278;QD=12.52;ReadPosRankSum=2.819;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:409,214:0.34:623
chr9	66457588	rs10907850	T	C	2773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-4.681;QD=4.43;ReadPosRankSum=1.017;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:491,135:0.22:626
chr9	66457593	rs141224694	C	A	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=3.943;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=-5.927;QD=2.36;ReadPosRankSum=-0.678;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:515,76:0.13:591
chr9	66457594	rs1809740	A	G	16314.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:132,457:0.78:589
chr9	66457601	rs79204868	G	T	5712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=5.596;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=2.217;QD=10.04;ReadPosRankSum=-0.778;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:403,166:0.29:569
chr9	66457605	rs55842063	C	T	4328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=-8.113;QD=7.96;ReadPosRankSum=0.555;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:383,161:0.30:544
chr9	66457609	rs12380199	G	A	2561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-7.274;QD=4.96;ReadPosRankSum=0.920;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:423,93:0.18:516
chr9	66457612	.	C	A	2739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.330;ClippingRankSum=0.000;DP=498;ExcessHet=3.0103;FS=4.484;MLEAC=1;MLEAF=0.500;MQ=54.52;MQRankSum=7.395;QD=5.53;ReadPosRankSum=-1.392;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:406,89:0.18:495
chr9	66457613	rs144074368	C	G	4131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=3.758;MLEAC=1;MLEAF=0.500;MQ=54.47;MQRankSum=4.008;QD=9.63;ReadPosRankSum=-0.532;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:313,116:0.27:429
chr9	66457618	.	C	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=-3.821;QD=0.21;ReadPosRankSum=1.101;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:426,34:0.07:460
chr9	66457620	rs74362572	C	T	4835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=3.630;MLEAC=1;MLEAF=0.500;MQ=53.97;MQRankSum=2.129;QD=10.70;ReadPosRankSum=-2.401;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:319,133:0.29:452
chr9	66457626	.	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DP=410;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=53.48;MQRankSum=-3.460;QD=0.29;ReadPosRankSum=0.323;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:376,32:0.08:408
chr9	66457633	.	G	A	816.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DP=372;ExcessHet=3.0103;FS=3.551;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=6.564;QD=2.21;ReadPosRankSum=-0.723;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:321,49:0.13:370
chr9	66457634	.	G	T	168.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DP=367;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=52.92;MQRankSum=-2.504;QD=0.46;ReadPosRankSum=-0.334;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:336,29:0.08:365
chr9	66457635	rs113849030	GTC	G	460.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=5.503;MLEAC=1;MLEAF=0.500;MQ=52.91;MQRankSum=-6.286;QD=1.34;ReadPosRankSum=0.492;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:309,35:0.10:344
chr9	66457646	rs78339757	G	C	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.942;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=4.373;MLEAC=1;MLEAF=0.500;MQ=52.39;MQRankSum=-6.024;QD=1.81;ReadPosRankSum=0.846;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:282,35:0.11:317
chr9	66457652	rs1809741	C	A	3545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=51.82;MQRankSum=-1.059;QD=12.53;ReadPosRankSum=-1.966;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:186,97:0.34:283
chr9	66457664	rs78392104	T	C	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:169,86:0.34:255
chr9	66457675	rs75677823	G	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.70;MQRankSum=5.122;QD=1.10;ReadPosRankSum=-0.159;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:191,25:0.12:216
chr9	66457690	.	C	G	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=3.341;MLEAC=1;MLEAF=0.500;MQ=49.42;MQRankSum=3.249;QD=1.66;ReadPosRankSum=0.373;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:128,15:0.10:143
chr9	66457691	rs111684071	A	C	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:101,36:0.26:137
chr9	66457730	.	A	C	598	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=3;HapScore=4;MGOF=66;MMLQ=26;MQ=42.84;NF=0;NR=17;PP=598;QD=37.2218360322;SC=CTGGCGAAGAAAATGTCCTTC;SbPval=1.0;Source=Platypus;TC=47;TCF=2;TCR=45;TR=17;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:30,17:0.36:47
chr9	66457742	.	T	C	598	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=3;HapScore=4;MGOF=66;MMLQ=27;MQ=42.47;NF=0;NR=13;PP=598;QD=48.6747086575;SC=ATGTCCTTCCTCTGGGGAAAG;SbPval=1.0;Source=Platypus;TC=31;TCF=2;TCR=29;TR=13;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:18,13:0.42:31
chr9	66499220	rs10907866	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:100,71:0.42:171
chr9	66499292	rs77998783	T	C	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.329;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.184;MLEAC=1;MLEAF=0.500;MQ=53.34;MQRankSum=-9.086;QD=3.18;ReadPosRankSum=2.002;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:197,68:0.26:265
chr9	66499334	.	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.500;MQ=50.78;MQRankSum=-4.393;QD=2.14;ReadPosRankSum=0.624;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:127,34:0.21:161
chr9	66499336	rs185058144	A	C	1444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.500;MQ=50.43;MQRankSum=-5.839;QD=9.63;ReadPosRankSum=1.550;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:100,50:0.33:150
chr9	66499356	rs201959709	G	A	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=48.08;MQRankSum=-3.433;QD=6.13;ReadPosRankSum=-1.635;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:55,34:0.38:89
chr9	66499403	rs199663448	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=43.88;MQRankSum=0.294;QD=3.27;ReadPosRankSum=-1.758;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr9	66517198	rs10796698	C	A	3948.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:334,215:0.39:549
chr9	68372264	rs140520174	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.428;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=11.590;MLEAC=1;MLEAF=0.500;MQ=44.40;MQRankSum=-2.358;QD=3.93;ReadPosRankSum=0.213;SOR=3.493;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr9	68372282	rs147422696	G	T	342.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=47.29;MQRankSum=1.158;QD=4.83;ReadPosRankSum=-0.648;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr9	68372283	rs150871961	C	T	342.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.500;MQ=48.01;MQRankSum=0.598;QD=4.18;ReadPosRankSum=0.475;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr9	68372284	rs140186551	T	G	597.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.168;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=28.601;MLEAC=1;MLEAF=0.500;MQ=47.95;MQRankSum=-3.385;QD=6.79;ReadPosRankSum=-1.607;SOR=3.979;set=HC	GT:AD:AF:DP	0/1:66,22:0.25:88
chr9	68372286	.	C	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.025;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=28.836;MLEAC=1;MLEAF=0.500;MQ=47.95;MQRankSum=-3.651;QD=6.36;ReadPosRankSum=-0.894;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr9	68372328	rs79919811	A	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:154,68:0.31:222
chr9	68372337	rs140269697	C	T	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.500;MQ=53.40;MQRankSum=-0.117;QD=5.94;ReadPosRankSum=0.931;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:192,53:0.22:245
chr9	68372354	rs80225136	A	G	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=53.95;MQRankSum=0.035;QD=5.30;ReadPosRankSum=-0.314;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:217,59:0.21:276
chr9	68372357	rs77799799	T	C	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:164,123:0.43:287
chr9	68372367	rs79888407	C	A	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.72;MQRankSum=1.178;QD=4.80;ReadPosRankSum=0.539;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:242,57:0.19:299
chr9	68372401	rs75707116	C	T	1140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=2.820;QD=4.26;ReadPosRankSum=-3.084;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:222,46:0.17:268
chr9	68372402	rs78803668	G	A	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:149,119:0.44:268
chr9	68372407	rs74366995	T	C	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=54.18;MQRankSum=2.452;QD=4.25;ReadPosRankSum=-3.104;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:222,41:0.16:263
chr9	68372409	.	G	A	1024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.11;MQRankSum=2.230;QD=3.94;ReadPosRankSum=-2.986;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:221,39:0.15:260
chr9	68372413	rs77458778	G	A	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=53.94;MQRankSum=1.929;QD=3.70;ReadPosRankSum=-2.794;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:220,36:0.14:256
chr9	68372420	rs77874833	C	G	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.286;MLEAC=1;MLEAF=0.500;MQ=54.19;MQRankSum=-3.717;QD=3.67;ReadPosRankSum=2.479;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:198,37:0.16:235
chr9	68372430	rs376337921	G	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-4.038;QD=4.25;ReadPosRankSum=2.492;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:182,36:0.17:218
chr9	68372434	rs368849262	C	T	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=54.37;MQRankSum=-4.075;QD=4.71;ReadPosRankSum=1.838;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:164,36:0.18:200
chr9	68372441	rs371275705	C	T	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=54.00;MQRankSum=-3.735;QD=5.87;ReadPosRankSum=0.752;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:130,34:0.21:164
chr9	68409560	.	G	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-2.773;QD=0.84;ReadPosRankSum=-2.237;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:52,6:0.10:58
chr9	68409565	rs112081340	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-3.001;QD=0.57;ReadPosRankSum=-1.418;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:59,6:0.09:65
chr9	68409572	.	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-3.622;QD=1.01;ReadPosRankSum=-1.362;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:62,7:0.10:69
chr9	68409580	rs199507432	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-2.958;QD=0.48;ReadPosRankSum=0.100;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:75,7:0.09:82
chr9	68409584	.	C	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-6.442;QD=3.38;ReadPosRankSum=-2.778;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:68,12:0.15:80
chr9	68409590	.	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-6.802;QD=3.12;ReadPosRankSum=-2.203;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:71,12:0.14:83
chr9	68409592	.	G	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-3.405;QD=0.95;ReadPosRankSum=0.500;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:76,7:0.08:83
chr9	68409600	rs74192497	C	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-3.615;QD=0.68;ReadPosRankSum=0.092;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:82,8:0.09:90
chr9	68409602	.	G	C	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-6.864;QD=2.44;ReadPosRankSum=-0.799;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:82,12:0.13:94
chr9	68409623	rs376674886	G	A	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-7.550;QD=7.03;ReadPosRankSum=-0.390;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:84,25:0.23:109
chr9	68409631	rs78137483	T	C	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-7.827;QD=7.73;ReadPosRankSum=-0.565;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:81,28:0.26:109
chr9	68409659	rs34008877	C	G	963.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-8.440;QD=7.47;ReadPosRankSum=0.167;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:83,46:0.36:129
chr9	68409677	rs113826078	A	G	2244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=55.83;MQRankSum=-9.642;QD=12.40;ReadPosRankSum=0.570;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:100,81:0.45:181
chr9	68409683	.	C	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-7.115;QD=0.47;ReadPosRankSum=-2.092;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:176,16:0.08:192
chr9	68409701	rs112537853	C	T	640.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-8.520;QD=3.02;ReadPosRankSum=-2.931;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:183,29:0.14:212
chr9	68409702	rs79189381	C	G	1816.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-4.334;QD=8.65;ReadPosRankSum=1.573;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:126,84:0.40:210
chr9	68409710	.	A	T	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-7.683;QD=1.72;ReadPosRankSum=-0.622;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:190,23:0.11:213
chr9	68409722	rs200340791	C	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-7.694;QD=1.64;ReadPosRankSum=1.970;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:185,22:0.11:207
chr9	68409731	rs80207175	A	G	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.70;MQRankSum=-8.714;QD=3.90;ReadPosRankSum=2.311;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:160,30:0.16:190
chr9	68409742	.	T	C	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.87;MQRankSum=-7.053;QD=2.81;ReadPosRankSum=1.821;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:141,21:0.13:162
chr9	68409745	rs73649016	C	G	2381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-10.160;QD=14.52;ReadPosRankSum=3.363;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:72,92:0.56:164
chr9	68409783	rs202031579	A	C	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.686;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=51.59;MQRankSum=-7.306;QD=5.99;ReadPosRankSum=-0.170;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:95,39:0.29:134
chr9	68409789	rs79786341	G	C	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=51.81;MQRankSum=-9.112;QD=18.06;ReadPosRankSum=-2.337;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:46,78:0.63:124
chr9	68409858	rs76880242	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.64;MQRankSum=-2.911;QD=2.72;ReadPosRankSum=0.434;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr9	68409865	rs373421059	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.82;MQRankSum=-2.687;QD=2.96;ReadPosRankSum=0.756;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr9	68409869	rs78838824	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.21;MQRankSum=-2.736;QD=2.60;ReadPosRankSum=0.201;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr9	68409872	.	A	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.14;MQRankSum=-2.786;QD=2.62;ReadPosRankSum=0.189;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr9	68415193	rs80256038	T	A	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-2.908;QD=13.03;ReadPosRankSum=-0.693;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:61,53:0.46:114
chr9	68415216	rs71234092	G	A	2202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=5.636;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=0.752;QD=7.54;ReadPosRankSum=-1.241;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:187,105:0.36:292
chr9	68415231	rs140259548	T	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=1.374;QD=0.23;ReadPosRankSum=-2.482;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:360,55:0.13:415
chr9	68415372	rs34249371	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.892;QD=0.15;ReadPosRankSum=2.100;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:202,17:0.08:219
chr9	68415379	rs34379288	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=5.496;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=1.008;QD=0.65;ReadPosRankSum=1.886;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:142,23:0.14:165
chr9	68415386	rs1844035	G	A	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=2.076;QD=4.36;ReadPosRankSum=-0.129;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:88,35:0.28:123
chr9	68415388	rs4928837	A	T	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-3.185;QD=16.52;ReadPosRankSum=0.573;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:50,65:0.57:115
chr9	68427750	rs78840873	T	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.964;MLEAC=1;MLEAF=0.500;MQ=51.08;MQRankSum=0.596;QD=2.08;ReadPosRankSum=-1.501;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:102,26:0.20:128
chr9	68427786	rs4300101	C	T	4698.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:33,176:0.84:209
chr9	68427800	rs77055654	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.500;MQ=52.03;MQRankSum=0.385;QD=0.88;ReadPosRankSum=2.525;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:206,37:0.15:243
chr9	68427818	rs111699417	G	GA	1758.73	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:189,88:0.32:277
chr9	68427840	rs76273339	G	A	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-6.224;QD=0.73;ReadPosRankSum=2.268;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:268,25:0.09:293
chr9	68427863	rs144877320	T	C	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=54.15;MQRankSum=-6.014;QD=1.13;ReadPosRankSum=2.779;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:261,29:0.10:290
chr9	68427877	rs4568707	G	A	3800.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:83,174:0.68:257
chr9	68427938	rs113084687	CAT	C	279.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:76,13:0.15:89
chr9	68427956	rs4316243	T	C	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr9	68427957	.	T	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-0.077;QD=1.23;ReadPosRankSum=1.449;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr9	68433462	rs111392331	T	C	2524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=2.939;QD=3.14;ReadPosRankSum=4.998;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:610,195:0.24:805
chr9	68433464	rs79004307	C	T	8716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.47;MQRankSum=-4.823;QD=10.98;ReadPosRankSum=1.790;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:537,257:0.32:794
chr9	68433468	rs75281072	G	C	12320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-9.538;QD=15.86;ReadPosRankSum=-1.493;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:434,343:0.44:777
chr9	68433481	rs112175502	T	TCTC	950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.670;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-11.218;QD=1.32;ReadPosRankSum=-6.756;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:651,70:0.10:721
chr9	68433510	rs75661796	C	G	3980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=53.78;MQRankSum=-8.102;QD=6.57;ReadPosRankSum=4.282;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:429,177:0.29:606
chr9	68433520	.	T	C	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0.000;DP=561;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=52.24;MQRankSum=-4.436;QD=1.17;ReadPosRankSum=-1.557;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:502,54:0.10:556
chr9	68433523	rs62543350	T	C	7970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.989;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=52.08;MQRankSum=-15.801;QD=14.28;ReadPosRankSum=-3.537;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:278,280:0.50:558
chr9	68433537	rs74819687	T	G	11255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.259;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=4.122;MLEAC=1;MLEAF=0.500;MQ=52.28;MQRankSum=-17.833;QD=19.11;ReadPosRankSum=-2.316;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:235,354:0.60:589
chr9	68433548	.	C	T	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0.000;DP=718;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.55;MQRankSum=-6.131;QD=1.57;ReadPosRankSum=3.025;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:634,74:0.10:708
chr9	68433550	rs144797473	A	G	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0.000;DB;DP=726;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=-6.065;QD=1.53;ReadPosRankSum=3.550;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:641,74:0.10:715
chr9	68433556	rs76632075	G	T	4843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=2.660;MLEAC=1;MLEAF=0.500;MQ=52.25;MQRankSum=0.946;QD=6.57;ReadPosRankSum=-0.405;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:500,237:0.32:737
chr9	68433568	rs139880713	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.924;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=52.22;MQRankSum=-9.638;QD=0.65;ReadPosRankSum=-7.347;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:606,104:0.15:710
chr9	68433620	rs62543351	C	T	4583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.924;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.500;MQ=52.22;MQRankSum=3.735;QD=7.49;ReadPosRankSum=4.965;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:353,259:0.42:612
chr9	68433625	rs139088975	A	G	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=52.25;MQRankSum=-4.177;QD=0.81;ReadPosRankSum=4.068;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:493,88:0.15:581
chr9	68433641	rs78330154	G	T	4935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=52.21;MQRankSum=-12.676;QD=10.41;ReadPosRankSum=8.511;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:309,165:0.35:474
chr9	68433657	rs141211711	A	C	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=5.090;MLEAC=1;MLEAF=0.500;MQ=51.77;MQRankSum=-8.566;QD=1.05;ReadPosRankSum=4.850;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:257,27:0.10:284
chr9	68433673	rs150998881	A	G	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=52.11;MQRankSum=-2.140;QD=3.39;ReadPosRankSum=-1.305;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:167,53:0.24:220
chr9	68433701	rs62543352	A	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.89;MQRankSum=3.656;QD=4.41;ReadPosRankSum=0.218;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr9	69002188	rs2374889	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr9	69002193	rs75969422	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=6.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=1.370;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr9	69002200	rs10908046	C	T	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.957;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr9	69002294	rs79965448	C	T	5336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-1.094;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:304,148:0.33:452
chr9	69002304	rs78546776	C	A	5904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=0.601;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:370,168:0.31:538
chr9	69002317	rs76266132	T	C	6044.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:401,181:0.31:582
chr9	69002413	rs62555122	T	C	2576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=1.059;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:167,82:0.33:249
chr9	69002423	rs62555123	G	A	2425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=0.441;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:138,70:0.34:208
chr9	69120693	rs200239202	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr9	69256741	rs62557778	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=-0.256;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr9	69256816	rs62557779	G	A	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=0.363;QD=10.20;ReadPosRankSum=0.594;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:42,45:0.52:87
chr9	69256833	rs113407575	A	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-0.521;QD=8.37;ReadPosRankSum=-0.393;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:60,52:0.46:112
chr9	71478595	rs72720038	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	71478986	rs10869434	G	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	71538069	rs2027208	A	G	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	71555492	rs10746973	A	G	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	71555522	rs10746974	C	T	5750.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	71628207	rs3730386	G	C	5136.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:260,253:0.49:513
chr9	71629038	.	C	CGCGGCGGCG	1372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=4.813;QD=10.81;ReadPosRankSum=-2.748;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:82,45:0.35:127
chr9	71650752	rs2481598	A	G	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	71667986	rs7865353	G	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	71714693	rs10121021	C	T	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	71789156	rs13301644	C	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr9	71789386	rs144607139	T	TCGTGAG	2034.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.75;ReadPosRankSum=-1.195;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:50,53:0.51:103
chr9	71820008	rs2498440	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr9	71827618	rs34883177	T	C	483.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr9	71831398	rs2498417	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr9	71843023	rs2309428	C	A	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr9	71849314	rs202100183	CT	C	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.899;QD=4.06;ReadPosRankSum=-0.163;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:29,30:0.51:59
chr9	71850853	rs2275431	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr9	71854737	rs72187140	TAAAC	T	394.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr9	71854769	rs2993823	C	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr9	71864230	rs189052640	C	T	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-0.234;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:95,138:0.59:233
chr9	71865932	rs2282335	G	A	2127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=1.594;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:155,114:0.42:269
chr9	71986276	rs74709394	G	C	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr9	71986315	rs1034239	T	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	71986605	rs180867442	A	G	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,47:0.52:90
chr9	72000674	rs10867436	C	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.92;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	72000703	rs193921010	TA	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.04;ReadPosRankSum=-1.912;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr9	72002911	rs5898077	T	TGTTATA	8036.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.086;QD=26.44;ReadPosRankSum=1.893;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:2,302:0.99:304
chr9	72006393	rs139462503	C	CT	1711.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.237;QD=21.13;ReadPosRankSum=-0.096;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:1,80:0.99:81
chr9	72046057	.	GAA	G	514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.891;QD=15.14;ReadPosRankSum=0.377;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr9	72064749	rs2781532	T	C	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	72082970	rs10867613	C	A	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	72086415	rs1761287	T	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	72132199	rs11139063	G	A	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	72338180	rs11139996	T	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	72338610	rs11139997	T	C	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr9	72373624	rs10735564	A	G	8153.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	72373775	rs34814489	TA	T	71.80	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	72374677	rs2274745	T	G	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	72374702	rs3831183	T	TGGACGCTTG	5395.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:150,131:0.47:281
chr9	72374969	rs2252130	T	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	72472746	rs35585376	TA	T	1132.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr9	72472831	rs10780682	C	T	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:160,146:0.48:306
chr9	72473053	rs1133275	TG	CA	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr9	72501698	rs4407955	G	T	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	72501962	rs4548246	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr9	72723062	rs1927104	G	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-1.363;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:31,32:0.51:63
chr9	72740974	rs1927112	A	G	12661.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.02;ReadPosRankSum=-0.357;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:2,504:1.00:506
chr9	72741312	rs1998972	G	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	72783608	rs10780871	T	C	8444.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr9	72785653	rs4744587	T	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	72893298	rs10714271	GT	G	116.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr9	72897434	rs1180116	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=1.713;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,28:0.50:56
chr9	72901096	rs1180123	T	C	11498.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr9	72933958	rs7025228	G	C	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	72963036	.	ACTTTT	A	31.73	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:5,2:0.29:7
chr9	72965438	rs1536957	A	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	73002648	rs7020167	C	G	6274.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=1.963;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:2,239:0.99:241
chr9	73150873	rs17535963	T	G	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:181,179:0.50:360
chr9	73150918	rs41287373	C	T	3859.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:206,195:0.49:401
chr9	73150984	rs6560142	C	T	4391.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:225,219:0.49:444
chr9	73151715	rs7033976	C	T	7648.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	73151970	rs3739776	C	T	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:193,153:0.44:346
chr9	73164596	.	GA	G	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=-0.307;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:116,35:0.23:151
chr9	73164611	rs1889914	G	A	1753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-1.587;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:67,88:0.57:155
chr9	73164712	rs1889915	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr9	73213610	rs4744605	A	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr9	73213644	rs4744606	A	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr9	73234066	rs7849400	G	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=1.649;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	73234884	rs3829095	G	C	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:56,81:0.59:137
chr9	73240312	rs7035025	C	G	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	73250037	rs4322073	C	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	73250096	rs117745369	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr9	73250378	rs71505401	A	ATT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.282;QD=13.85;ReadPosRankSum=0.812;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr9	73255337	rs1538670	A	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	73255432	rs1538669	G	C	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	73391409	rs34030044	C	CA	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.032;QD=9.17;ReadPosRankSum=0.881;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr9	73408518	rs10868890	T	G	8532.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr9	73442724	rs1034538	C	T	8966.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr9	73457832	rs1337031	G	A	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	73457861	rs1337030	A	G	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	73458045	rs3833697	T	TA	1564.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:12,81:0.87:93
chr9	73461337	rs7862440	T	A	15258.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,600:1.00:600
chr9	73461558	rs10868907	G	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	73479441	.	C	CA	261.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.000;QD=14.54;ReadPosRankSum=0.892;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr9	74300311	rs36080695	T	TA	247.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=1.563;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:13,22:0.63:35
chr9	74300640	rs2310021	A	G	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.13;ReadPosRankSum=1.939;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:18,62:0.78:80
chr9	74314210	rs4263836	A	T	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	74314368	rs5898223	T	TA	437.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.832;QD=11.82;ReadPosRankSum=-0.237;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,29:0.78:37
chr9	74326961	rs3739781	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	74331376	rs4745117	A	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	74332970	rs25692	G	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:28,65:0.70:93
chr9	74349917	rs71353514	CAA	C	1940.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.10;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:9,75:0.89:84
chr9	74360128	rs148738602	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:160,48:0.23:208
chr9	74477617	rs10573097	TAAGA	T	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	74526540	rs4744647	T	A	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	74526978	rs10580392	GCA	G	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	74561883	rs10120169	G	A	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	74622853	rs10120981	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=-2.735;QD=3.25;ReadPosRankSum=2.142;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr9	74622941	rs11143055	G	T	234.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.02;MQRankSum=1.521;QD=19.57;ReadPosRankSum=0.978;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr9	74671719	rs13295099	T	C	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr9	74671828	rs36059196	C	CT	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=0.512;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr9	74674427	rs7047632	A	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	74675604	rs12345527	T	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	74846187	rs11442621	T	TA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=1.882;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr9	74974534	rs3012505	C	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	74975136	rs2809270	T	C	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	74975711	rs1853276	T	C	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	74979593	rs2224603	G	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	75303653	rs2589615	C	T	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-1.898;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:192,50:0.21:242
chr9	75315438	rs1796993	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.101;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr9	75315641	rs66939074	TATATATATATATATATATACACACACACACACACATACAC	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.58;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr9	75357542	rs7848136	A	G	164.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-0.903;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr9	75357543	rs146170244	GAAACAAAC	G	155.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-1.031;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr9	75366709	.	T	TTTTG	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-1.022;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr9	75420448	rs71359524	C	CT	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.315;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=7.533;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.912;QD=2.36;ReadPosRankSum=0.039;SOR=0.185;set=HC	GT:AD:AF:DP	0/1:66,25:0.27:91
chr9	75521060	rs348472	A	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr9	75533864	.	C	CT	33	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=10;HapScore=2;MGOF=3;MMLQ=27;MQ=58.3;NF=0;NR=4;PP=33;QD=11.25;SC=CACCAAATGGCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=4;WE=75533872;WS=75533854;set=Platypus	GT:AD:AF:DP	0/1:15,4:0.21:19
chr9	75539077	rs3739962	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr9	75540276	rs8187932	AT	A	272.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr9	75541942	rs2303317	G	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.89;ReadPosRankSum=1.030;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr9	75543974	rs8187922	T	TAA	2627.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	75544038	rs2288087	A	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	75545882	rs13959	G	A	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:63,138:0.69:201
chr9	75554952	rs7027604	A	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:14,50:0.78:64
chr9	75554982	rs348449	G	A	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.301;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	75775116	rs17574438	T	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr9	75807171	rs202039128	T	A	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.500;MQ=48.14;MQRankSum=-3.750;QD=9.35;ReadPosRankSum=1.147;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:45,45:0.50:90
chr9	77230423	rs3904059	A	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:19,55:0.74:74
chr9	77230477	rs3904058	A	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	77245162	rs2146777	A	T	7909.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr9	77282927	rs1327838	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	77286876	rs3818559	A	C	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	77352133	rs10682495	A	ACT	512.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	77400718	rs55720633	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-0.709;QD=0.75;ReadPosRankSum=0.510;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr9	77478815	rs11144121	T	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=23.51;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	77563175	rs67215531	GTTT	G	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr9	77692555	rs60305501	CT	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.582;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr9	77693422	rs35443976	CGAG	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.661;SOR=1.833;set=HC	GT:AD:AF:DP	0/1:33,4:0.11:37
chr9	77745424	rs2295861	T	C	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:30,125:0.81:155
chr9	77746804	rs2281662	T	C	5089.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:46,236:0.84:282
chr9	77752675	rs2025159	A	G	931.80	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:5,37:0.88:42
chr9	78600898	rs4322070	C	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-1.579;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:111,24:0.18:135
chr9	78601268	rs1538843	G	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	78711053	rs1416547	T	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.285;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr9	78790138	.	AAATGGAATGGAATGAAATGG	A	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=4.041;MLEAC=1;MLEAF=0.500;MQ=65.70;MQRankSum=3.682;QD=12.73;ReadPosRankSum=-0.025;SOR=1.914;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr9	78790187	rs10118321	G	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=68.56;MQRankSum=-4.545;QD=4.76;ReadPosRankSum=-3.571;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr9	78799566	rs1537183	C	T	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	78803466	rs7046850	T	C	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	78803931	rs2270571	A	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:14,63:0.82:77
chr9	78804711	rs139022349	CTACTTTCAGGACTAAT	C	3653.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:31,90:0.74:121
chr9	78808034	rs17776908	A	G	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:9,45:0.83:54
chr9	78808329	rs3077117	G	GAAAA	753.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.67;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	78819998	rs10869732	T	C	4358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.87;ReadPosRankSum=-2.039;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:40,191:0.83:231
chr9	78820011	rs7851394	G	A	8228.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr9	78842380	rs1390141	A	G	4452.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:50,206:0.80:256
chr9	78848542	rs903545	C	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	78854105	rs76379341	C	T	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	78907078	rs1546151	G	A	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:5,65:0.93:70
chr9	78907125	rs1546150	C	T	7098.96	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:23,172:0.88:195
chr9	78907134	rs3077145	AT	A	3027.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=-0.417;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:27,185:0.87:212
chr9	78910108	rs13283901	A	G	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:10,55:0.85:65
chr9	78910401	rs10869747	G	A	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:8,50:0.86:58
chr9	78917160	rs7028066	T	C	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:45,194:0.81:239
chr9	78923351	rs6560510	A	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr9	78925765	rs61744750	G	A	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:19,101:0.84:120
chr9	78925814	rs2257775	C	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	78936358	rs1110222	G	A	8132.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:33,350:0.91:383
chr9	78936492	rs1110223	A	G	12708.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:94,573:0.86:667
chr9	78937877	rs34797584	A	G	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:13,59:0.82:72
chr9	78937901	rs55903217	T	C	4384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.26;ReadPosRankSum=-0.219;SOR=1.285;set=HC	GT:AD:AF:DP	0/1:21,107:0.84:128
chr9	78937901	.	TAC	CAT	2706	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=1;MGOF=35;MMLQ=26;MQ=60.0;NF=53;NR=16;PP=2706;QD=20;SC=GGAGCTAGCCTACTGCAGACA;SbPval=0.67;Source=Platypus;TC=97;TCF=72;TCR=25;TR=69;WE=78937911;WS=78937891;set=Platypus	GT:AD:AF:DP	1/0:28,69:0.71:97
chr9	78937903	rs55805812	C	T	4384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.73;ReadPosRankSum=0.397;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:23,107:0.82:130
chr9	78937929	rs56332566	AC	A	5338.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:37,195:0.84:232
chr9	78937974	rs3001772	C	T	12016.85	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:72,537:0.88:609
chr9	78938043	rs2495207	G	A	16396.77	.	AC=2;AF=1.00;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	1/1:78,722:0.90:800
chr9	78938186	rs2803429	G	C	2995.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:28,122:0.81:150
chr9	78938236	rs55762660	G	A	2004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.33;ReadPosRankSum=-2.805;SOR=1.457;set=HC	GT:AD:AF:DP	0/1:14,48:0.77:62
chr9	78938246	rs2803430	T	C	2121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.728;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.15;ReadPosRankSum=-2.511;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:15,51:0.77:66
chr9	78938256	rs2259775	C	G	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.54;ReadPosRankSum=-2.350;SOR=1.323;set=HC	GT:AD:AF:DP	0/1:14,45:0.76:59
chr9	78942956	rs2259969	A	G	11009.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:100,507:0.84:607
chr9	79003324	rs2501926	G	A	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	79003440	rs2501924	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	79009106	rs2490582	A	C	8902.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr9	79009139	rs3739729	A	G	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:19,222:0.92:241
chr9	79118661	rs1057419	A	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr9	79240050	rs700809	T	C	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	79244208	rs370679936	TA	T	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.597;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:108,39:0.27:147
chr9	79251600	rs582011	T	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.372;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr9	79256917	.	TA	T	692.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=16.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=1.671;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:222,113:0.34:335
chr9	79259592	rs511040	C	T	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.972;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:212,34:0.14:246
chr9	79306919	rs498266	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=1.060;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:285,44:0.13:329
chr9	79307176	rs500952	G	C	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	79318375	rs11267615	GGTGACAGCCTGCAAC	G	14677.73	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:1,330:1.00:331
chr9	79318471	rs560094	C	T	12310.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr9	79318677	rs561970	T	C	11173.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr9	79318998	rs620552	A	G	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	79319050	rs620476	A	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	79319130	rs59728338	AT	A	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	79320095	rs3739524	T	G	13775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.98;ReadPosRankSum=1.590;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:138,628:0.82:766
chr9	79320640	rs512110	C	T	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr9	79320847	rs2077181	G	C	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:46,187:0.80:233
chr9	79321276	rs517634	T	C	13589.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:2,531:1.00:533
chr9	79321871	rs577993	C	T	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=2.208;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:223,44:0.16:267
chr9	79322068	rs683866	G	T	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.828;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:413,101:0.20:514
chr9	79322674	rs680775	A	G	6741.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	79322720	rs680729	A	G	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	79324135	rs11267622	A	ATGACTGTTGCAG	853.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=1.880;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.836;QD=2.11;ReadPosRankSum=0.943;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:360,45:0.11:405
chr9	79324439	rs12238013	A	G	11206.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:87,492:0.85:579
chr9	79324741	rs557352	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=0.401;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:339,51:0.13:390
chr9	79324955	rs11145017	C	T	6045.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:62,269:0.81:331
chr9	79325297	rs11145018	T	G	8412.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:59,377:0.86:436
chr9	79325558	rs600859	G	C	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=1.184;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:308,67:0.18:375
chr9	79325615	rs611461	A	G	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	79325759	rs11145019	C	T	4106.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:41,175:0.81:216
chr9	79328461	rs9785303	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr9	79896655	.	G	GTA	222.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr9	79954410	.	G	GT	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.358;QD=2.38;ReadPosRankSum=1.398;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr9	79968293	.	G	GT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.693;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:63,24:0.28:87
chr9	80044056	rs2296781	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=4.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.025;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:137,20:0.13:157
chr9	80049298	rs1801258	C	T	5403.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:43,230:0.84:273
chr9	80343587	rs5898555	G	GA	441.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr9	80430802	rs2289121	C	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	80912115	rs2277148	G	C	10296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.135;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.637;QD=19.00;ReadPosRankSum=4.569;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:65,477:0.88:542
chr9	80915392	rs3824360	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr9	80915403	rs10121107	A	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr9	80917070	rs3739472	C	T	189.74	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr9	80917096	rs3739473	C	T	80.98	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr9	80919756	rs3739474	T	G	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	80921446	rs944513	G	T	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	80932574	rs3780194	T	A	3790.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	80943272	rs72745660	C	A	81.85	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr9	82006446	rs11138190	G	A	2792.80	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:16,123:0.88:139
chr9	82187750	rs1934610	A	G	29197.77	.	AC=2;AF=1.00;AN=2;DB;DP=1175;set=Intersection	GT:AD:AF:DP	1/1:2,1156:1.00:1158
chr9	82189914	rs2791566	T	C	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr9	82335292	.	GGTGT	G	400	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=2;HapScore=2;MGOF=17;MMLQ=26;MQ=60.0;NF=0;NR=9;PP=400;QD=44.7777777778;SC=TATAGGTATGGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=22;TCF=0;TCR=22;TR=9;WE=82335306;WS=82335282;set=Platypus	GT:AD:AF:DP	1/1:13,9:0.41:22
chr9	82335293	rs71979610	GT	G	1203.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.09;ReadPosRankSum=1.214;SOR=0.560;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr9	82335295	rs377409028	GTGT	G	1154.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.39;ReadPosRankSum=1.742;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr9	84202837	.	G	GTGTGTCATCCCGCC	2313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=4.244;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=1.718;QD=13.53;ReadPosRankSum=1.953;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:87,84:0.49:171
chr9	84207898	rs7023704	C	G	5920.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:58,276:0.83:334
chr9	84215034	rs2777781	A	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.099;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:140,33:0.19:173
chr9	84230804	rs72747252	G	A	267.31	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr9	84235798	rs11139343	G	A	4299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=0.179;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:55,191:0.78:246
chr9	84248203	rs113273526	CGTGTGTGTGTGT	C,CGT	1994.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=64;set=Intersection	GT:AF:DP	1/2:0.23,0.77:52
chr9	84267021	.	T	TACACACACAC,TACACACACACAC	2137.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=44.54;ReadPosRankSum=1.652;SOR=3.209;set=HC	GT:AD:AF:DP	1/2:6,12,30:0.25,0.62:48
chr9	84267147	rs2228173	T	C	8634.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr9	84268878	rs2796447	A	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=1.105;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:71,20:0.22:91
chr9	84275014	rs2627002	C	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	84275095	rs2796450	C	T	7698.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	84275256	rs36108203	C	CA,CAA	1270.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=4.512;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.347;SOR=1.238;set=HC	GT:AD:AF:DP	1/2:29,53,34:0.46,0.29:116
chr9	84300694	rs2244337	A	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=-0.921;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:98,15:0.13:113
chr9	84530065	rs35922121	C	CT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.373;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:35,20:0.36:55
chr9	85597720	rs66792515	CAGAGAG	CAG,C	7150.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=339;set=Intersection	GT:AF:DP	1/1:0.98:182
chr9	85619330	.	T	TTTTATTCTATTA	1869.73	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	85619351	rs141850659	ATTTAC	A	3699.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	85627408	rs4146960	G	A	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	85627540	rs10121395	A	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	85627554	rs4146961	C	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	85630621	rs1976455	C	T	7890.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	85677254	rs142099428	AGG	A	18561.73	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr9	85863091	rs10114696	A	G	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.677;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:253,79:0.24:332
chr9	85905666	rs942283	A	G	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	85905737	rs942282	C	G	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	85905786	rs942281	G	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	85912746	rs34913088	A	G	1588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.271;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:487,135:0.22:622
chr9	85913590	rs11140011	A	G	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	85914243	rs1359168	A	C	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	85926893	.	G	GA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=1.199;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr9	85964450	rs4877253	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,63:0.70:90
chr9	85987879	rs57558822	GA	G	994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.216;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.222;QD=4.13;ReadPosRankSum=1.502;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:142,99:0.41:241
chr9	85987935	rs3739657	T	C	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=0.389;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:99,53:0.35:152
chr9	86004993	rs7853850	C	T	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr9	86152951	rs182079082	G	A	3716.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:46,161:0.78:207
chr9	86238086	rs2811903	T	C	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	86241489	rs2780977	A	G	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	86243933	rs2811905	G	T	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	86278817	rs7866234	C	A	6471.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	86279015	rs2781003	C	T	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	86279814	rs10868037	G	A	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	86284178	rs1044175	C	A	13333.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,525:1.00:525
chr9	86292938	rs11393859	C	CT,CTT	512.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.74;MQRankSum=-0.139;QD=18.31;ReadPosRankSum=-1.564;SOR=0.307;set=HC	GT:AD:AF:DP	1/2:2,14,12:0.50,0.43:28
chr9	86297739	rs57150962	G	GT	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.597;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr9	86327898	rs10119344	C	T	17599.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr9	86457387	rs71365387	G	GT	380.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.49;QD=20.04;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	86468715	rs295274	A	T	10170.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=26.01;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr9	86485622	.	CT	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.615;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr9	86504005	rs13289566	C	T	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=1.109;QD=3.42;ReadPosRankSum=-0.928;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:201,65:0.24:266
chr9	86592026	rs296886	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=0.617;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr9	87360106	rs144586764	ACACCT	A	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=0.701;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr9	87475806	rs200976732	GTTTATTTATTTA	G,GTTTA	2911.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=87;set=Intersection	GT:AF:DP	1/2:0.24,0.75:72
chr9	87563252	rs1078947	T	C	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	88292506	.	TA	T	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.214;QD=0.55;ReadPosRankSum=0.027;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:243,62:0.20:305
chr9	88356668	rs10114338	A	C	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.475;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr9	88356743	rs10114347	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr9	88356820	rs199589522	AGGC	A	1467.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr9	88370983	rs145934085	A	C	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:43,143:0.77:186
chr9	88401021	rs11141102	A	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:315,102:0.24:417
chr9	88431019	rs148852212	T	A	5408.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:127,254:0.67:381
chr9	88437998	rs112238588	A	G	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:49,100:0.67:149
chr9	88464394	rs200430907	A	G	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.528;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=44.497;MLEAC=1;MLEAF=0.500;MQ=54.06;MQRankSum=-12.033;QD=3.69;ReadPosRankSum=-3.102;SOR=2.794;set=HC	GT:AD:AF:DP	0/1:201,58:0.22:259
chr9	88618462	rs1328923	C	G	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	88650586	.	TAAA	T	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=14.166;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=2.63;ReadPosRankSum=1.332;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:73,27:0.27:100
chr9	88667582	rs10780743	T	G	7839.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr9	88882750	rs34344174	T	TA	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.797;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr9	88924057	rs4520250	A	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	88924985	rs5898925	C	CT	896.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=1.246;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:8,52:0.87:60
chr9	88925534	rs5898926	ATG	A	1131.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	88925774	rs11792804	A	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.972;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr9	89763851	rs458983	C	G	6690.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	89771569	rs76452933	G	A	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.119;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:230,78:0.25:308
chr9	90062823	rs12682834	A	G	8961.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr9	90256827	rs3118846	A	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr9	90258248	rs3793657	C	T	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.664;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=7.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=-1.218;SOR=2.054;set=HC	GT:AD:AF:DP	0/1:22,64:0.74:86
chr9	90258262	.	CT	C	810.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=9.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.505;SOR=2.372;set=HC	GT:AD:AF:DP	0/1:49,84:0.63:133
chr9	90258412	rs10561388	CTT	C	22081.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr9	90258415	rs62576207	T	C	22088.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr9	90262393	rs2274607	G	A	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=3.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=2.137;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:163,53:0.25:216
chr9	90264758	rs2274605	C	T	4018.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:72,177:0.71:249
chr9	90265015	rs3818584	C	T	8715.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:124,380:0.75:504
chr9	90313717	rs3128495	G	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.308;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:210,66:0.24:276
chr9	90316635	rs148030008	ATT	A	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.129;QD=5.39;ReadPosRankSum=0.259;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:62,33:0.35:95
chr9	90316710	rs3118858	T	C	2431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=726;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.718;QD=3.39;ReadPosRankSum=1.643;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:535,182:0.25:717
chr9	90320954	rs1927973	G	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.318;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:117,33:0.22:150
chr9	90321583	rs3118863	C	T	2133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=652;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=1.563;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:493,150:0.23:643
chr9	90322023	rs1056719	G	A	5939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=1858;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=1.452;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:1396,445:0.24:1841
chr9	90342675	rs2274611	C	T	2068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.337;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:359,139:0.28:498
chr9	90343780	rs2378757	A	C	1133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.657;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:244,82:0.25:326
chr9	90387628	rs7024674	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr9	90387805	rs9410955	A	C	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.794;QD=3.24;ReadPosRankSum=1.050;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:400,125:0.24:525
chr9	90388370	rs7853691	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.105;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:136,41:0.23:177
chr9	90388539	rs10735592	T	A	1283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.869;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:314,101:0.24:415
chr9	90401638	rs7039358	C	G	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.907;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.456;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:98,22:0.18:120
chr9	90462253	rs7018666	G	A	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.809;QD=3.13;ReadPosRankSum=-1.401;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:352,114:0.24:466
chr9	90500193	rs59256416	C	G	27077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=1884;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=2.080;QD=14.54;ReadPosRankSum=0.731;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:589,1273:0.68:1862
chr9	90500224	rs58932350	C	T	24193.77	.	AC=1;AF=0.500;AN=2;DB;DP=1661;set=Intersection	GT:AD:AF:DP	0/1:525,1122:0.68:1647
chr9	90500405	rs7850542	A	C	23207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=1547;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=0.626;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:445,1081:0.71:1526
chr9	90500627	rs34946554	G	A	23703.77	.	AC=1;AF=0.500;AN=2;DB;DP=1487;set=Intersection	GT:AD:AF:DP	0/1:384,1087:0.74:1471
chr9	90500909	rs75035814	C	T	8796.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:149,400:0.73:549
chr9	90501448	rs4076795	C	A	7001.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:151,321:0.68:472
chr9	90501500	rs34017995	G	A	11267.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:143,296:0.67:439
chr9	90501514	rs4076794	C	G	11200.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:145,297:0.67:442
chr9	90501609	rs34791830	C	T	8166.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:162,382:0.70:544
chr9	90502458	rs10868670	T	A	3288.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:39,145:0.79:184
chr9	90502819	rs10868671	T	C	14842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=1016;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.926;QD=14.72;ReadPosRankSum=0.666;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:303,705:0.70:1008
chr9	90503007	rs11789780	A	G	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:57,160:0.74:217
chr9	90503451	rs11142017	G	A	18668.77	.	AC=1;AF=0.500;AN=2;DB;DP=1162;set=Intersection	GT:AD:AF:DP	0/1:294,855:0.74:1149
chr9	90534156	rs202161190	T	TTCTTGTCTCCCAGCGTCA	4775.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.409;ClippingRankSum=0.000;DB;DP=1202;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-9.998;QD=6.73;ReadPosRankSum=2.584;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:483,227:0.32:710
chr9	90537856	rs79747501	A	G	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=22.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	90537892	rs147621256	G	C	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.44;QD=29.21;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	90538360	.	C	G	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.026;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=3.279;MLEAC=1;MLEAF=0.500;MQ=45.54;MQRankSum=-3.863;QD=7.66;ReadPosRankSum=1.855;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:59,35:0.37:94
chr9	90559129	rs7027067	G	A	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	90586043	rs622418	G	A	7350.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:400,370:0.48:770
chr9	90588814	rs570184	C	G	33188.77	.	AC=2;AF=1.00;AN=2;DB;DP=1293;set=Intersection	GT:AD:AF:DP	1/1:0,1286:1.00:1286
chr9	90588903	rs665983	C	T	30443.77	.	AC=2;AF=1.00;AN=2;DB;DP=1171;set=Intersection	GT:AD:AF:DP	1/1:0,1161:1.00:1161
chr9	90588970	rs28364935	C	A	4277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=0.396;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:165,198:0.55:363
chr9	90589016	rs666459	A	G	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	90589502	rs576555	G	C	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	90744936	rs200880066	T	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=7.810;MLEAC=1;MLEAF=0.500;MQ=49.08;MQRankSum=-3.997;QD=5.88;ReadPosRankSum=-1.110;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr9	90748837	rs10868714	T	C	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	91083260	rs376917926	CT	C	1300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.213;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:199,168:0.46:367
chr9	91089962	rs57473363	CTT	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=19.234;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.632;QD=5.28;ReadPosRankSum=1.218;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr9	91150242	rs78460940	C	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-0.701;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr9	91262296	rs4543636	G	A	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.042;QD=1.85;ReadPosRankSum=1.178;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:390,94:0.19:484
chr9	91262343	rs5899049	A	ATGG	2183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.485;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.929;QD=6.46;ReadPosRankSum=-1.244;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:266,72:0.21:338
chr9	91262597	rs7862585	A	G	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.563;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:75,27:0.26:102
chr9	91606203	rs4877039	C	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	91628546	rs944483	A	C	8887.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr9	91652414	rs2282125	A	T	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.930;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:437,116:0.21:553
chr9	91653287	rs944481	G	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr9	91656963	rs3750399	T	C	2172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-2.033;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:388,151:0.28:539
chr9	91666812	rs7021743	C	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	91667136	rs7025214	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	91680531	rs3818668	C	G	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:36,85:0.70:121
chr9	91680600	rs9410455	A	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr9	91927022	rs3211669	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr9	91930331	.	G	GT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.235;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr9	91934787	rs3763616	A	G	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	91978397	rs13295305	C	T	3738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=936;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-2.692;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:679,252:0.27:931
chr9	91978539	rs13297725	A	T	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.380;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:278,97:0.26:375
chr9	91978783	rs45515192	G	A	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=1.001;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:424,145:0.25:569
chr9	91978990	rs45615438	C	T	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=1.306;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:68,14:0.17:82
chr9	92003679	rs11526468	C	T	11509.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:225,538:0.71:763
chr9	92017733	rs41287361	G	A	2351.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:36,103:0.74:139
chr9	92020433	rs7856677	G	A	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	92219921	rs3138499	A	C	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-1.286;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:157,59:0.27:216
chr9	92220288	rs3138503	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr9	93624755	rs914928	T	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	93627484	rs4744516	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr9	93629347	rs1760124	G	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	93629789	rs965892	C	G	9736.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr9	93639803	rs1760132	A	G	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	93650015	rs2126053	T	A	10271.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr9	94118258	rs10991898	C	T	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:65,151:0.70:216
chr9	94172975	rs33973463	C	T	1938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=784;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.472;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:607,162:0.21:769
chr9	94456490	rs923772	A	G	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:25,58:0.70:83
chr9	94456643	rs923771	G	C	4179.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:86,191:0.69:277
chr9	94456705	rs923770	T	A	7177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=4.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.66;ReadPosRankSum=0.691;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:61,181:0.75:242
chr9	94456714	rs923769	C	T	7008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=4.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.88;ReadPosRankSum=-0.168;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:55,172:0.76:227
chr9	94485928	rs2230578	C	T	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:36,70:0.66:106
chr9	94486321	rs10761129	C	T	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:77,153:0.67:230
chr9	94486688	rs10992063	G	A	17101.77	.	AC=1;AF=0.500;AN=2;DB;DP=1082;set=Intersection	GT:AD:AF:DP	0/1:283,775:0.73:1058
chr9	94487459	rs10992065	C	T	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr9	94493470	rs10992070	G	A	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.895;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:147,45:0.23:192
chr9	94518301	rs200892985	A	G	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-1.854;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:301,73:0.20:374
chr9	94518328	rs12683181	C	T	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=2.300;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:379,87:0.19:466
chr9	94538115	rs7863557	C	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.421;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:184,50:0.21:234
chr9	94797040	rs16908102	T	C	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr9	94821666	rs56160856	G	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:63,13:0.17:76
chr9	94821701	.	T	C	113.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:34,9:0.21:43
chr9	94830232	rs73512337	C	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:222,69:0.24:291
chr9	94841937	rs41279063	G	A	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.703;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:233,76:0.25:309
chr9	94843200	.	G	C	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.114;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=447.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=2.780;SOR=9.149;set=HC	GT:AD:AF:DP	0/1:145,96:0.40:241
chr9	94877716	rs55740103	A	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-1.991;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:377,61:0.14:438
chr9	94877836	rs10992234	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.129;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:55,10:0.15:65
chr9	94939615	rs4744122	T	C	5016.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:87,229:0.72:316
chr9	94939981	rs9299400	G	A	22276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=1460;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.419;QD=15.50;ReadPosRankSum=-0.077;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:412,1025:0.71:1437
chr9	94940133	rs9299401	C	T	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:30,82:0.73:112
chr9	94950719	rs7863859	C	G	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr9	94951819	rs3858097	A	G	10572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.62;ReadPosRankSum=2.175;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:154,482:0.76:636
chr9	95016215	rs10820960	C	T	7258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=-1.003;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:168,346:0.67:514
chr9	95018903	rs9299403	A	G	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:37,119:0.76:156
chr9	95022637	rs10820962	A	G	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=1.971;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,28:0.74:38
chr9	95027436	rs10820963	A	G	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr9	95042917	rs3736835	G	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr9	95063096	rs35912497	CA	C	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-0.348;QD=7.88;ReadPosRankSum=1.226;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr9	95068046	rs1133908	C	T	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:19,73:0.79:92
chr9	95081079	rs10992302	G	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	95088204	rs7860297	A	G	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:48,125:0.72:173
chr9	95147840	rs1053441	T	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,29:0.85:34
chr9	95155563	rs2274966	C	A	3944.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:83,175:0.68:258
chr9	95219597	rs4744132	G	A	6461.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	95226702	rs4744133	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr9	95237024	rs3078372	CTCA	C,CTCATCA	6823.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=288;set=Intersection	GT:AF:DP	1/2:0.23,0.75:198
chr9	95237222	rs3739606	G	T	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:29,119:0.80:148
chr9	95256519	rs331380	C	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.447;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:290,77:0.21:367
chr9	95256593	rs11788523	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:24,69:0.74:93
chr9	95274261	rs2296666	A	G	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=1.513;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:19,52:0.73:71
chr9	95274338	rs2296667	A	G	4230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=-0.888;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:65,192:0.75:257
chr9	95279985	rs968040	C	A	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:32,105:0.77:137
chr9	95284873	rs9299405	A	G	7670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=1.213;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:143,351:0.71:494
chr9	95284982	rs10120210	T	G	11003.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr9	95362665	rs1874128	G	A	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-2.839;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:171,54:0.24:225
chr9	95373790	rs2296669	C	T	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.01;ReadPosRankSum=-2.041;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:16,52:0.76:68
chr9	95373884	rs1552908	A	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr9	95378353	rs2274413	G	A	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.511;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:395,127:0.24:522
chr9	95380726	rs2148537	G	A	3907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=1040;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-1.196;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:760,269:0.26:1029
chr9	95381024	rs3839884	CT	C	167.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr9	95397418	rs1111047	C	G	9084.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr9	95400261	rs2277169	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=2.178;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr9	95400642	rs41266683	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:82,33:0.29:115
chr9	95402950	rs3216731	AG	A	4477.73	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:391,157:0.29:548
chr9	95414726	rs7853617	G	A	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.293;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr9	95414730	rs376104704	CA	C	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.097;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:36,27:0.43:63
chr9	95414828	rs7857502	C	T	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=1.166;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:106,27:0.20:133
chr9	95420983	rs10992393	A	G	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:64,157:0.71:221
chr9	95432029	rs754600	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:71,33:0.32:104
chr9	95475647	rs10992429	G	T	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:10,46:0.82:56
chr9	95481975	rs56339669	C	G	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=756;set=Intersection	GT:AD:AF:DP	0/1:521,206:0.28:727
chr9	95481994	rs12238691	C	T	2077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.066;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:333,131:0.28:464
chr9	95526667	rs2277164	G	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:69,28:0.29:97
chr9	95527083	.	A	AGCC	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=3.738;QD=4.32;ReadPosRankSum=1.416;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:142,31:0.18:173
chr9	95527095	rs191031181	T	C	1228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=2.659;QD=6.50;ReadPosRankSum=-2.490;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:140,49:0.26:189
chr9	95571939	rs117956773	T	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:136,48:0.26:184
chr9	95572194	rs116748805	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:54,26:0.33:80
chr9	95572247	rs10821018	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr9	95580726	rs143411689	TTTTG	T	10585.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;QD=44.29;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	95580745	rs71364316	GT	G	2187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=2.523;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.500;QD=11.11;ReadPosRankSum=-1.872;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:48,149:0.76:197
chr9	95618605	rs76420217	TA	T,TAA	1756.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=183;set=Intersection	GT:AF:DP	1/2:0.38,0.53:137
chr9	95618657	rs56233957	CA	C	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-0.440;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr9	95738781	rs3802381	C	A	14330.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr9	95738957	rs71496423	C	T	8023.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:262,386:0.60:648
chr9	95766471	rs6479445	A	T	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	95772738	rs36150183	GGAGA	G	4040.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=43.92;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	95772799	rs151317911	A	AAGAGAC	2243.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	95780465	rs7048975	A	G	15062.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.40;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,593:1.00:593
chr9	95782667	rs11790517	C	T	15062.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr9	95784485	rs10821054	A	T	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	95784564	.	G	A	2743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DP=837;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.571;QD=3.30;ReadPosRankSum=-0.571;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:625,206:0.25:831
chr9	95794946	rs150126405	TCCTCCCGCCCACTCCA	T	5032.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	95797999	rs4073460	C	T	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	95820941	rs142105381	ACCCAGGCCCAGG	A	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-0.949;QD=16.35;ReadPosRankSum=2.058;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr9	95838022	.	ACC	A	128.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.93;MQRankSum=0.431;QD=21.49;ReadPosRankSum=-0.210;SOR=1.872;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr9	95840077	rs4341217	A	G	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.089;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:185,45:0.20:230
chr9	95840178	.	A	G	2338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DP=1015;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.536;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:798,212:0.21:1010
chr9	95840256	rs1131773	A	G	1670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.814;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:469,135:0.22:604
chr9	95840344	rs4077811	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:60,21:0.26:81
chr9	95872744	rs3819011	C	T	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:30,91:0.75:121
chr9	95874070	rs2027585	G	C	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:49,93:0.65:142
chr9	95874428	rs10821071	G	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr9	95875556	rs2298242	G	A	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=-0.400;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr9	95875575	rs2298243	G	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.28;ReadPosRankSum=2.241;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr9	95887320	rs2275848	G	T	9057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-1.337;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:165,419:0.72:584
chr9	95896571	.	C	CGCCCGCCCCCG	393.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr9	95991895	rs7874101	T	C	1444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.557;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:366,109:0.23:475
chr9	95992213	rs7871272	A	G	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	95993170	rs7048527	A	G	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:22,75:0.77:97
chr9	95993326	rs11787888	T	C	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.832;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:415,128:0.24:543
chr9	95993429	rs7032194	G	C	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:21,93:0.82:114
chr9	96000622	rs1539670	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	96009776	rs112756131	C	T	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.504;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:436,107:0.20:543
chr9	96015377	rs4744202	A	G	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	96015398	rs4744203	A	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,15:0.24:63
chr9	96019118	rs10122466	A	G	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	96024182	rs12000967	G	C	3556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DB;DP=854;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.021;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:603,230:0.28:833
chr9	96024794	rs7854000	T	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	96024835	rs111979803	C	T	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=0.815;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:57,29:0.34:86
chr9	96024859	rs1936403	A	G	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.80;SOR=1.272;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	96024883	rs7867954	C	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=1.513;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:203,56:0.22:259
chr9	96025052	rs7857220	T	C	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.518;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:227,77:0.25:304
chr9	96025717	rs10649709	C	CAG	3903.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	96025771	rs6479467	G	A	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	96026058	.	GCATGGTGGGGGTGTGGTGGGGGTGGGGC	G	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=7.405;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.313;SOR=2.266;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr9	96026122	rs147436035	T	TG	2742.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	96026243	rs55981123	G	A	3708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=918;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.864;QD=4.07;ReadPosRankSum=-0.160;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:663,248:0.27:911
chr9	96030230	rs7856268	T	C	15287.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:1,583:1.00:584
chr9	96030392	rs10761205	G	T	3541.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:66,163:0.71:229
chr9	96031237	.	G	C	1832.77	.	AC=1;AF=0.500;AN=2;DP=332;set=Intersection	GT:AD:AF:DP	0/1:214,108:0.34:322
chr9	96031262	rs1936401	T	C	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	96051521	rs2169756	A	G	18294.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:2,698:1.00:700
chr9	96055063	rs41278286	C	T	18607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=1176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=0.045;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:295,863:0.75:1158
chr9	96080699	rs36081907	C	T	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.042;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:262,80:0.23:342
chr9	96082752	rs6479474	G	T	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.035;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:308,111:0.26:419
chr9	96082919	rs13293217	A	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	96097669	rs62572859	C	T	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-1.803;QD=3.68;ReadPosRankSum=1.236;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:257,88:0.26:345
chr9	96097673	rs62574460	G	A	5955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=3.284;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=1.946;QD=16.41;ReadPosRankSum=-1.145;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:92,271:0.75:363
chr9	96097747	rs78436873	C	T	2475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=47.72;MQRankSum=-5.249;QD=3.74;ReadPosRankSum=-0.118;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:488,174:0.26:662
chr9	96209832	rs41274384	G	A	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-0.601;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:339,98:0.22:437
chr9	96209987	rs139372739	GA	G	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.650;QD=10.74;ReadPosRankSum=-0.217;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr9	96213529	rs7853605	A	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.637;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.869;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:68,13:0.16:81
chr9	96222014	rs11346134	AT	A	114.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr9	96238578	rs10821135	C	T	1250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=0.180;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:362,108:0.23:470
chr9	96259883	rs35062269	T	TA	1980.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.215;QD=4.13;ReadPosRankSum=1.494;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:309,171:0.36:480
chr9	96285736	rs5899181	CTTTATA	C	534.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr9	96398508	rs2398851	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	96398831	rs10992818	C	G	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.463;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:51,60:0.54:111
chr9	96407822	rs6479500	A	G	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	96407920	rs7038310	C	T	3667.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:257,193:0.43:450
chr9	96407983	rs9695734	C	T	3156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-0.864;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:132,159:0.55:291
chr9	96415482	rs56134753	A	T	3115.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:191,158:0.45:349
chr9	96420390	rs3763605	A	G	15411.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr9	96422420	rs10992836	T	C	23164.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;ClippingRankSum=0.000;DB;DP=909;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=0.145;SOR=0.303;set=HC	GT:AD:AF:DP	1/1:1,885:1.00:886
chr9	96425138	rs3750358	T	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	96426049	rs112327078	T	TCACA	2062.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	96428243	rs41276198	C	T	10693.77	.	AC=1;AF=0.500;AN=2;DB;DP=1009;set=Intersection	GT:AD:AF:DP	0/1:472,526:0.53:998
chr9	96428425	rs76863038	C	T	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr9	96439004	rs149736720	C	CCCTGCCTCCACCACA	20688.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.491;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.04;MQRankSum=0.828;QD=45.97;ReadPosRankSum=1.560;SOR=0.268;set=HC	GT:AD:AF:DP	1/1:1,449:1.00:450
chr9	96440051	rs41276204	C	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:59,81:0.58:140
chr9	96441555	rs1132027	C	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:85,65:0.43:150
chr9	96581893	rs4743934	A	G	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	97054889	rs368816646	TTG	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.697;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr9	97054922	.	TG	CG	189	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=11;MMLQ=24;MQ=59.22;NF=1,0;NR=8,9;PP=34,189;QD=7.64124583858;SC=TGTGTGTGTGTGCGCGTGCAC;SbPval=0.88;Source=Platypus;TC=23;TCF=5;TCR=18;TR=9,9;WE=97054930;WS=97054912;set=Platypus	GT:AD:AF:DP	0/1:14,9:0.39:23
chr9	97054922	.	TG	TGCG	189	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=11;MMLQ=24;MQ=59.22;NF=1,0;NR=8,9;PP=34,189;QD=7.64124583858;SC=TGTGTGTGTGTGCGCGTGCAC;SbPval=0.88;Source=Platypus;TC=23;TCF=5;TCR=18;TR=9,9;WE=97054930;WS=97054912;set=Platypus	GT:AD:AF:DP	0/1:7,9:0.56:16
chr9	97054922	rs74578608	T	C,TGC	628.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=-0.208;SOR=1.460;set=HC	GT:AD:AF:DP	1/2:8,13,16:0.35,0.43:37
chr9	97209066	rs9409546	T	C	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	97213843	rs4744347	A	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	97216541	rs7023744	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	97218342	rs2277182	C	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	97219678	rs10570184	CTTTT	C	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	97219735	rs112270671	A	ATT	4028.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.194;QD=26.68;ReadPosRankSum=0.794;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:1,150:0.99:151
chr9	97221434	rs9409765	G	A	10104.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr9	97321127	rs1048510	T	C	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:76,92:0.55:168
chr9	97321172	rs1543185	T	C	3286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=1.010;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:228,173:0.43:401
chr9	97325726	rs41281154	A	G	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:272,237:0.47:509
chr9	97346932	.	A	G	6550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-0.456;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:212,309:0.59:521
chr9	97349666	rs573212	C	G	4365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=-0.492;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:186,221:0.54:407
chr9	97365642	rs9695	G	A	8645.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr9	97365720	rs1769257	T	C	20719.77	.	AC=2;AF=1.00;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	1/1:0,799:1.00:799
chr9	97365985	rs3780554	G	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr9	97367898	rs28369760	TAAGA	T	3251.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:143,90:0.39:233
chr9	97369083	rs2297084	G	A	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	97369149	rs1769259	C	T	7661.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=1.603;SOR=0.254;set=HC	GT:AD:AF:DP	1/1:1,297:1.00:298
chr9	97372172	rs3739747	C	T	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:75,77:0.51:152
chr9	97426330	.	TA	T	499.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.532;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=4.606;QD=1.70;ReadPosRankSum=1.174;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:210,84:0.29:294
chr9	97427531	rs4743965	C	A	6811.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:395,353:0.47:748
chr9	97555228	rs55826214	GA	G	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.534;QD=1.15;ReadPosRankSum=-1.813;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr9	97768286	rs10761364	T	C	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	97822941	rs1888944	T	C	24051.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.868;ClippingRankSum=0.000;DB;DP=965;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=-1.089;SOR=0.409;set=HC	GT:AD:AF:DP	1/1:1,948:1.00:949
chr9	97849090	rs4657	A	G	7240.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr9	97873435	rs2404457	G	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr9	97873957	rs4647534	A	G	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:313,252:0.45:565
chr9	97885616	rs881791	T	C	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.236;QD=11.54;ReadPosRankSum=0.865;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr9	97933252	rs3737142	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.16;ReadPosRankSum=-0.023;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr9	98209594	rs357564	G	A	11748.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:1,452:1.00:453
chr9	98239190	rs574688	G	C	6499.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:345,336:0.49:681
chr9	98638288	rs690528	A	G	12510.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr9	98678164	rs683829	G	T	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	98694641	rs10760675	T	C	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	99003264	rs2066485	C	T	4616.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:138,210:0.60:348
chr9	99006578	rs2066486	T	C	9226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-0.866;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:226,442:0.66:668
chr9	99012277	rs407179	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr9	99013616	rs8190541	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr9	99013663	rs408876	A	G	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:73,121:0.62:194
chr9	99015259	rs2066475	C	T	7363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-3.757;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:220,352:0.62:572
chr9	99060612	rs7029101	T	C	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:98,191:0.66:289
chr9	99060882	rs3925451	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr9	99064202	rs8190483	C	CA	4346.73	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:515,272:0.35:787
chr9	99084420	rs183293966	T	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.498;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-1.090;SOR=1.316;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr9	99145885	.	C	CCCTCGG	3061.73	.	AC=1;AF=0.500;AN=2;DP=216;set=Intersection	GT:AD:AF:DP	0/1:68,80:0.54:148
chr9	99220908	.	C	CT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.283;QD=5.51;ReadPosRankSum=0.739;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr9	99233431	.	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=6.833;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.908;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr9	100041610	rs2255135	C	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	100041876	rs2255139	A	G	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	100053194	rs3747509	G	A	6550.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:58,302:0.84:360
chr9	100054705	rs2615143	T	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr9	100069648	rs45498203	T	C	11017.84	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:67,507:0.88:574
chr9	100069747	rs117120766	A	G	6020.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:44,260:0.86:304
chr9	100069900	rs3214072	A	G	4636.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.893;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.67;ReadPosRankSum=1.551;SOR=0.526;set=HC	GT:AD:AF:DP	1/1:20,194:0.91:214
chr9	100074227	rs3747505	T	C	164.41	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr9	100075702	rs7856924	T	C	551.74	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr9	100076896	rs3747502	G	A	11017.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:88,496:0.85:584
chr9	100201664	rs3214070	G	A	6768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=0.410;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:63,310:0.83:373
chr9	100234633	rs12552100	T	C	7037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.72;ReadPosRankSum=-1.511;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:56,320:0.85:376
chr9	100388119	rs10817858	G	T	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=1.251;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:321,105:0.25:426
chr9	100616066	rs1867280	G	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	100616583	rs3021523	T	C	29311.77	.	AC=2;AF=1.00;AN=2;DB;DP=1156;set=Intersection	GT:AD:AF:DP	1/1:1,1138:1.00:1139
chr9	100616700	rs71369530	AGCCGCC	A	1950.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.22;QD=37.51;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	100617021	rs3021526	C	T	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	100617375	rs7046645	T	C	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	100672338	rs2282192	C	T	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.160;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:369,112:0.23:481
chr9	100675816	rs1127703	A	G	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:42,139:0.77:181
chr9	100684645	rs3824496	C	T	12363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.01;ReadPosRankSum=2.717;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:173,554:0.76:727
chr9	100684719	rs3183928	A	C	10199.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:168,464:0.73:632
chr9	100684757	rs3183927	A	G	7761.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:148,358:0.71:506
chr9	100692237	rs79474766	T	TA	439.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr9	100700242	rs199724877	C	CT	362.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=0.798;QD=7.55;ReadPosRankSum=0.877;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr9	100700505	.	T	TA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.236;QD=0.27;ReadPosRankSum=0.987;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:107,20:0.16:127
chr9	100745902	rs3739672	A	G	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.843;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:493,136:0.22:629
chr9	100767530	rs1131641	C	T	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	100774646	rs987142	A	T	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	100819070	rs3199064	T	G	7149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=1.959;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:136,339:0.71:475
chr9	100823084	rs13049	T	C	4020.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:79,187:0.70:266
chr9	100823135	rs1058446	G	C	4298.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:74,195:0.72:269
chr9	100843417	rs4237190	A	G	5187.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:87,231:0.73:318
chr9	100849719	.	CGTACCTGGAGGCTGTCACGCCG	C	2160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=5.027;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.776;QD=8.12;ReadPosRankSum=1.710;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:199,67:0.25:266
chr9	100854765	rs10818475	C	G	4419.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:101,209:0.67:310
chr9	100854920	rs4743163	C	A	2045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.915;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=16.77;ReadPosRankSum=1.126;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:32,90:0.74:122
chr9	100881525	rs2761063	C	G	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.953;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:331,87:0.21:418
chr9	100889340	rs942165	G	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr9	100893233	rs368790199	CG	C	3812.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.913;QD=24.44;ReadPosRankSum=0.230;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:45,111:0.71:156
chr9	100962504	rs10046819	G	C	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	100965451	rs12342968	G	A	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr9	100965472	rs3739667	C	T	9277.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr9	100970881	rs10985441	A	G	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	100971348	rs3739666	T	C	17058.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr9	100973178	rs3832623	A	AGAGGCCT	8449.73	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=44.71;SOR=1.712;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	100983566	rs7855855	C	G	7635.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	100995721	rs879369	A	G	1971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=1.591;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:374,139:0.27:513
chr9	100995758	rs879368	G	T	3062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=875;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=1.318;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:643,224:0.26:867
chr9	101006210	rs10818666	T	C	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=0.205;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:46,30:0.39:76
chr9	101006216	rs10818667	A	G	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=0.880;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chr9	101006436	rs10818668	C	A	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.257;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:239,69:0.22:308
chr9	101006443	rs10818669	T	C	8784.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr9	101052858	rs2304391	T	C	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:25,70:0.74:95
chr9	101053076	rs5010004	C	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:107,39:0.27:146
chr9	101053123	rs41273923	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:50,19:0.28:69
chr9	101061665	rs41273925	G	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-0.605;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr9	101065807	rs10985795	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr9	101147787	rs111409348	A	AG	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=0.080;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr9	101151307	rs2304388	A	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=1.140;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr9	101243021	rs2779547	T	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	101243364	rs2808557	T	G	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	101304348	rs2184026	C	T	4621.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:96,216:0.69:312
chr9	101340301	rs2808536	A	C	14437.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr9	101340316	rs3750344	T	C	2302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=1.889;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:463,166:0.26:629
chr9	101340425	rs3750343	A	G	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	101340440	rs2808537	A	G	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	101470641	rs186943372	A	C	2087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.639;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:131,59:0.31:190
chr9	101470648	rs77213774	C	A	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.498;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.993;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:149,65:0.30:214
chr9	101513396	.	GA	G	850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.121;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:27,54:0.67:81
chr9	101533220	rs6415847	C	T	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=1.464;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:205,80:0.28:285
chr9	101539865	rs7035722	G	C	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-1.152;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:101,28:0.22:129
chr9	101546578	rs12056975	G	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.070;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr9	101547190	rs41283626	C	T	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=1.996;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,68:0.82:83
chr9	101552584	rs41283630	G	A	13516.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:211,612:0.74:823
chr9	101553014	rs7038640	G	T	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:33,112:0.77:145
chr9	101558609	rs138948716	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.037;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:84,21:0.20:105
chr9	101558774	.	C	T	2827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.66;ReadPosRankSum=-1.857;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:12,72:0.86:84
chr9	101558777	.	C	A	2827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.25;ReadPosRankSum=-1.633;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:12,66:0.85:78
chr9	101585444	rs2295922	G	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	101602171	rs2277189	C	G	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	101606549	rs1885608	G	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	101748356	rs2075663	A	G	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:54,127:0.70:181
chr9	101749498	rs2075664	C	A	13858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.294;ClippingRankSum=0.000;DB;DP=904;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=0.824;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:250,645:0.72:895
chr9	101767385	rs41305481	A	G	338.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.16;ReadPosRankSum=-0.578;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr9	101785558	rs7848837	T	G	5017.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:144,235:0.62:379
chr9	101785598	rs7861925	G	T	4992.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:121,229:0.65:350
chr9	101785633	rs7851787	T	C	4718.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:85,218:0.72:303
chr9	101787017	rs7028686	T	G	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:28,75:0.73:103
chr9	101796906	.	T	TCTCCCTC	440	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=2;MGOF=60;MMLQ=27;MQ=58.22;NF=2;NR=22;PP=440;QD=19.4583333333;SC=AGAACTTTCTTCTCCCTCCTC;SbPval=0.6;Source=Platypus;TC=24;TCF=2;TCR=22;TR=24;WE=101796914;WS=101796896;set=Platypus	GT:AD:AF:DP	0/1:0,24:1.00:24
chr9	101804329	rs7854112	T	C	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:37,131:0.78:168
chr9	101804416	rs7851079	A	G	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:47,122:0.72:169
chr9	101807112	rs16918154	T	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,64:0.68:94
chr9	101810339	rs869776	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-0.721;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr9	101812072	rs13296166	G	A	4771.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:114,229:0.67:343
chr9	101814626	rs4142986	C	G	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=0.808;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:25,80:0.76:105
chr9	101814852	rs7019613	T	C	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:42,117:0.74:159
chr9	101984936	rs170623	C	G	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-1.227;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:221,86:0.28:307
chr9	102068058	rs184437	A	G	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	102068344	rs790287	C	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	102068832	rs170462	G	A	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;MQ=59.79;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	102068912	rs182704	C	T	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	102590597	.	G	A	15355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DP=966;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.199;QD=16.10;ReadPosRankSum=1.612;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:252,702:0.74:954
chr9	102591042	rs12344570	A	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.426;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:221,45:0.17:266
chr9	102595069	rs41274654	G	A	2075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.870;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.236;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:465,152:0.25:617
chr9	102625834	rs7032301	T	C	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:85,33:0.28:118
chr9	102690883	rs6478987	A	G	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	102713580	rs1997368	G	A	16196.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr9	102713591	rs3739794	T	C	15108.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr9	102780721	rs4743375	T	C	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr9	102783113	rs3739795	T	C	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:28,118:0.81:146
chr9	102820002	rs942163	T	C	1685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=-0.377;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:15,79:0.84:94
chr9	102860928	rs6479001	G	A	4878.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:80,217:0.73:297
chr9	103015184	rs2245216	T	C	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.244;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:252,65:0.21:317
chr9	103027226	.	C	CT	765.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DP=454;ExcessHet=3.0103;FS=3.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=1.437;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:246,99:0.29:345
chr9	103054951	rs2787374	T	C	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.603;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:336,114:0.25:450
chr9	103059476	rs7864494	A	G	1563.78	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:7,64:0.90:71
chr9	103060386	rs3813712	T	G	4030.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:73,178:0.71:251
chr9	103064530	rs7472	G	A	3357.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:52,154:0.75:206
chr9	103065884	rs3923501	C	T	7512.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:137,355:0.72:492
chr9	103091630	rs10819759	A	G	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:57,159:0.74:216
chr9	103108941	rs2151131	C	G	4705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=1.626;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:82,217:0.73:299
chr9	103114793	rs1930244	G	C	8315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=-2.075;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:133,385:0.74:518
chr9	103275692	rs1999484	T	A	64.10	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	104086191	rs56021420	C	G	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-1.529;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:194,61:0.24:255
chr9	104124664	rs2229594	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	104130292	rs79172147	C	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.164;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr9	104130338	rs73657933	C	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.139;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:93,37:0.28:130
chr9	104130469	rs41281027	C	G	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.090;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:189,50:0.21:239
chr9	104133628	rs1572983	C	T	3170.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:59,147:0.71:206
chr9	104152790	rs17853010	G	C	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:77,149:0.66:226
chr9	104152846	rs8131	G	A	4743.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:92,223:0.71:315
chr9	104153155	rs10989486	G	C	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=4.01;ReadPosRankSum=1.630;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:117,40:0.25:157
chr9	104184022	rs4577	G	A	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	104187400	rs506571	A	G	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	104306988	rs145182555	TA	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=1.564;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr9	104309445	rs2273976	T	C	2968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.404;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:445,191:0.30:636
chr9	104324545	rs10521057	G	A	7205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-0.631;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:91,330:0.78:421
chr9	104341796	rs17774987	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr9	104375538	rs17189821	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr9	104385711	rs10989563	CA	TG	5559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=0.591;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:77,141:0.65:218
chr9	104385800	rs10989565	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr9	104385813	rs10989566	A	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr9	104390789	rs10819955	C	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	104432293	rs1323434	C	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr9	104432873	rs942142	T	G	11694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=814;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=0.662;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:251,555:0.69:806
chr9	104433034	rs10512285	A	G	7687.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:151,355:0.70:506
chr9	104433235	rs10989589	C	T	6604.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:126,306:0.71:432
chr9	104433436	rs1885980	T	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,60:0.71:84
chr9	104449063	rs2506354	C	T	8147.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr9	104449098	rs10989591	C	T	4168.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:71,192:0.73:263
chr9	104499575	rs1337677	T	C	33746.77	.	AC=2;AF=1.00;AN=2;DB;DP=1325;set=Intersection	GT:AD:AF:DP	1/1:0,1301:1.00:1301
chr9	105757558	rs10739861	A	G	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	105757756	rs1341205	A	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	105763845	rs141187826	TTTTTG	T	319.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr9	105763912	rs10820335	T	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr9	105763970	rs149905682	C	CA	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.823;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr9	105765610	rs2066261	T	C	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	106857908	rs3739736	G	A	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	106860969	rs10991107	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=1.655;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr9	106876389	rs141153206	A	T	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr9	106878318	rs35784229	TCTC	T	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	106885332	rs7350223	A	G	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.031;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.519;SOR=1.530;set=HC	GT:AD:AF:DP	0/1:79,21:0.21:100
chr9	106885616	rs10991114	A	G	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.827;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr9	106888838	rs146077014	ATTAT	A	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	106894211	rs3780535	A	C	177.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	106896809	rs7872034	G	A	9796.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=25.38;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,386:1.00:386
chr9	106896874	rs11281153	T	TATATTATAA	4609.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;QD=43.49;SOR=1.300;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	107266596	rs7049042	T	C	5868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.96;ReadPosRankSum=1.190;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:86,260:0.75:346
chr9	107266774	rs1949755	C	G	11644.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	0/1:203,536:0.73:739
chr9	107266844	rs1403812	A	G	7549.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:117,338:0.74:455
chr9	107266943	rs1403811	G	A	8426.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:122,380:0.76:502
chr9	107267304	rs7030820	C	T	9478.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:193,433:0.69:626
chr9	107298444	rs41305445	C	T	11275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=735;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.70;ReadPosRankSum=-0.690;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:202,516:0.72:718
chr9	107299001	rs41304943	C	A	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:52,71:0.58:123
chr9	107331504	rs7026705	C	A	5724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=0.371;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:101,257:0.72:358
chr9	107360922	rs1851724	A	G	8022.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:131,376:0.74:507
chr9	107361312	rs1851723	T	C	19984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=1163;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-1.181;QD=17.36;ReadPosRankSum=-0.144;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:271,880:0.76:1151
chr9	107361439	rs4629933	G	C	18007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-2.899;QD=25.26;ReadPosRankSum=0.248;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:206,507:0.71:713
chr9	107361449	rs146576115	T	C	16466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=3.710;MLEAC=1;MLEAF=0.500;MQ=53.23;MQRankSum=-3.907;QD=30.66;ReadPosRankSum=1.271;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:162,375:0.70:537
chr9	107361451	rs201540433	GC	AG	15230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=3.710;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=-3.918;QD=29.35;ReadPosRankSum=1.395;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:157,362:0.70:519
chr9	107361460	rs116283639	G	A	13198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=51.88;MQRankSum=-3.735;QD=30.91;ReadPosRankSum=0.027;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:121,306:0.72:427
chr9	107361490	rs7042502	A	T	3026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.901;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=45.70;MQRankSum=-4.231;QD=17.00;ReadPosRankSum=1.140;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:51,127:0.71:178
chr9	107361642	rs1851722	G	A	2406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.460;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=0.050;QD=15.94;ReadPosRankSum=-1.825;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:43,108:0.72:151
chr9	107367132	rs10820679	G	A	6970.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:172,320:0.65:492
chr9	107368000	rs13289190	A	G	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:9,53:0.85:62
chr9	107379895	rs10761054	G	T	9905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.945;QD=14.74;ReadPosRankSum=2.252;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:208,464:0.69:672
chr9	107380396	rs36091517	T	G	3328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-1.884;QD=16.32;ReadPosRankSum=0.610;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:50,154:0.75:204
chr9	107456763	rs10991359	T	C	3512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=-1.248;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:56,164:0.75:220
chr9	107457275	rs10820709	A	C	3279.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:52,142:0.73:194
chr9	107457532	rs10761073	C	T	12863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=830;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.223;QD=15.69;ReadPosRankSum=1.539;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:223,597:0.73:820
chr9	107457759	rs1364946	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr9	107510145	rs3753024	G	C	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.850;QD=3.76;ReadPosRankSum=0.635;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:228,83:0.27:311
chr9	107510178	rs147856422	AGGGGC	A	10891.73	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	107515214	rs2274870	G	A	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	107531127	rs12351524	C	T	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:38,104:0.73:142
chr9	107531361	rs2472478	T	C	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	107547622	rs1331924	C	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr9	107548493	rs2740485	G	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	107550639	rs4149336	A	G	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr9	107553185	rs2020927	A	G	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-2.814;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:172,43:0.20:215
chr9	107553478	rs4149331	A	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.60;ReadPosRankSum=0.272;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr9	107554069	rs2066720	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.213;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr9	107556793	rs34484490	T	TAAA	1273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.961;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.393;QD=11.08;ReadPosRankSum=-0.530;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:59,56:0.49:115
chr9	107558766	rs73519810	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.282;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:112,27:0.19:139
chr9	107560647	rs60690601	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:126,27:0.18:153
chr9	107562804	rs2230808	T	C	8341.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:122,375:0.75:497
chr9	107566877	rs2777801	C	A	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:63,161:0.72:224
chr9	107576665	rs111337110	A	G	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.417;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:375,125:0.25:500
chr9	107578529	rs34788556	T	C	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-0.347;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:127,48:0.27:175
chr9	107579632	rs33918808	C	G	1155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-1.145;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:241,82:0.25:323
chr9	107593182	rs4743763	A	T	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:31,133:0.81:164
chr9	107593502	rs36028500	C	CT	53.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.84;ReadPosRankSum=1.266;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr9	107594770	rs55659052	CT	C	3466.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:30,106:0.78:136
chr9	107599438	rs4149346	G	GC	1239.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr9	107602678	rs2274873	G	A	11243.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:155,520:0.77:675
chr9	107620867	rs2230806	C	T	4685.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:81,218:0.73:299
chr9	107621140	rs2243313	A	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr9	107624029	rs2230805	C	T	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:59,153:0.72:212
chr9	107624123	rs34203904	CA	C	118.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	107651526	rs2275545	A	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-1.458;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:138,32:0.19:170
chr9	107665739	rs2575876	G	A	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	108059561	rs327993	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.152;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:115,20:0.15:135
chr9	108059598	rs5899653	GT	G	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=1.151;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:114,22:0.16:136
chr9	108060392	.	G	GA	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=2.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.378;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:121,33:0.21:154
chr9	108060412	rs75575818	G	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:99,33:0.25:132
chr9	108060515	rs2036876	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	108061597	rs16924420	A	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:132,55:0.29:187
chr9	108120506	rs7040751	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=1.588;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr9	108128048	rs7860321	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.520;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr9	108136820	rs7048586	C	A	1518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-1.603;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:223,93:0.29:316
chr9	108147627	rs2771034	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	108147763	rs3199966	T	G	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:227,77:0.25:304
chr9	108152199	rs2771040	G	A	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:77,224:0.74:301
chr9	108210665	rs3831166	GCT	G	890.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr9	108223786	rs10991661	A	G	3469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-0.474;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:38,151:0.80:189
chr9	108234163	rs11421948	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.085;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr9	108268656	.	C	CT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.19;ReadPosRankSum=-1.375;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:199,40:0.17:239
chr9	108275777	rs10739910	T	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	108293042	rs2768278	G	A	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:46,134:0.74:180
chr9	108402586	rs1854124	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr9	108402607	rs1854125	G	A	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr9	108456888	rs2271247	A	C	1950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=-2.198;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:33,93:0.74:126
chr9	108468129	rs3817141	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr9	108483741	rs7859253	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr9	108522175	rs10114077	C	T	8359.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:135,391:0.74:526
chr9	108536426	rs11330639	AT	A	188.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr9	109687403	rs17723637	A	G	2186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.204;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:485,158:0.25:643
chr9	109689752	rs3814541	C	T	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:428,154:0.26:582
chr9	109689859	rs3814540	T	C	2820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=2.559;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:604,204:0.25:808
chr9	109691676	rs3814538	A	G	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:468,178:0.28:646
chr9	110047132	rs10733562	G	C	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	110047316	rs10739234	A	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	110064265	rs11573665	G	A	753.90	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:4,34:0.89:38
chr9	110080967	rs1805332	A	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	110080967	.	ATAAATGTAT	GTAAATGTAA,GTAAATGTAT	315	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.47;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=26;MQ=59.69;NF=11,15;NR=2,2;PP=315,16;QD=28.3436826817;SC=ACATGAATCAATAAATGTATA;SbPval=0.46;Source=Platypus;TC=17;TCF=15;TCR=2;TR=13,17;WE=110080984;WS=110080957;set=Platypus	GT:AF:DP	0/1:0.76:17
chr9	110080976	rs1805331	T	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.40;ReadPosRankSum=0.217;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr9	110081018	rs1805335	A	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.105;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:93,25:0.21:118
chr9	110084417	rs11573700	G	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=3.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.898;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:210,42:0.17:252
chr9	110086149	rs1805334	G	A	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	110093970	rs3056494	CA	C	4711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.418;QD=12.50;ReadPosRankSum=1.483;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:54,323:0.86:377
chr9	110249908	.	TCAGGGCTGCCTTTGCTGACGCTGATGACCGACGGGCTGCCGTACTCGCTGC	T	15782.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.425;ClippingRankSum=0.000;DP=907;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.630;QD=19.73;ReadPosRankSum=2.952;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:396,404:0.51:800
chr9	111625913	rs4978370	A	G	8797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.521;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.928;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:203,486:0.71:689
chr9	111631647	rs3763644	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr9	111637304	rs2027433	G	T	5217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.62;ReadPosRankSum=-3.084;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:79,235:0.75:314
chr9	111637331	rs1981268	CC	AG	9708.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	111637935	rs12002774	G	A	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,72:0.64:112
chr9	111641627	rs2275496	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.860;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr9	111644396	rs2275495	G	A	6604.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:109,311:0.74:420
chr9	111651497	rs3780508	T	C	3181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.47;ReadPosRankSum=0.587;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:21,77:0.79:98
chr9	111651497	.	TAT	CAC	1521	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=1;MGOF=20;MMLQ=27;MQ=60.0;NF=32;NR=9;PP=1521;QD=38.4016554844;SC=GGGCAAACACTATCTCTGGAC;SbPval=0.71;Source=Platypus;TC=59;TCF=44;TCR=15;TR=41;WE=111651507;WS=111651487;set=Platypus	GT:AD:AF:DP	1/0:18,41:0.69:59
chr9	111651499	rs3780509	T	C	3181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.50;ReadPosRankSum=0.923;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:22,79:0.78:101
chr9	111653460	rs3737309	A	G	4520.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:65,199:0.75:264
chr9	111653574	rs1063110	C	G	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-2.857;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:473,120:0.20:593
chr9	111658963	rs10816764	T	G	7713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=0.830;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:103,351:0.77:454
chr9	111659021	rs2275626	T	C	3234.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:41,134:0.77:175
chr9	111659277	rs10979599	G	T	4972.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:106,234:0.69:340
chr9	111659483	rs2230793	T	G	6998.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:139,322:0.70:461
chr9	111660851	rs2230792	C	T	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=0.611;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr9	111661150	rs4978760	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr9	111662288	rs55969525	A	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	111662726	rs1341216	CG	TA	12720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.566;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.53;ReadPosRankSum=1.658;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:144,318:0.69:462
chr9	111663754	rs2230791	G	A	7415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-1.369;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:119,346:0.74:465
chr9	111663793	rs10979605	C	T	8704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=2.317;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:157,412:0.72:569
chr9	111665719	rs17792422	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr9	111665728	rs16913675	G	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr9	111668652	rs838827	C	T	5864.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:111,278:0.71:389
chr9	111670707	rs838824	T	C	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=1.059;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:178,68:0.28:246
chr9	111678428	rs1772046	T	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:115,49:0.30:164
chr9	111688767	rs2275635	C	T	1591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.481;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:389,122:0.24:511
chr9	111712910	rs2780334	G	C	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.193;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:266,71:0.21:337
chr9	111754288	rs838836	T	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr9	111798751	rs2256253	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.753;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr9	111800196	rs672973	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.208;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=1.404;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr9	111800234	rs534286	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:86,24:0.22:110
chr9	111812825	rs614253	C	T	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.102;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.835;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:397,130:0.25:527
chr9	111843055	rs497196	A	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr9	111868777	rs2583377	C	T	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:80,192:0.71:272
chr9	111870700	rs35388228	T	TA	514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.884;QD=4.56;ReadPosRankSum=1.338;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:59,54:0.48:113
chr9	111899928	rs10759329	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr9	111903890	rs11421991	G	GA	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.676;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:98,38:0.28:136
chr9	111911775	rs1533641	G	A	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	111911823	rs999729	C	G	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:123,43:0.26:166
chr9	111929420	rs10979723	C	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	111929420	.	CG	GC	565	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=1;HapScore=1;MGOF=25;MMLQ=23;MQ=59.09;NF=3;NR=8;PP=565;QD=56.2243522602;SC=CCGCGCCATCCGTGCGCACAG;SbPval=0.63;Source=Platypus;TC=14;TCF=4;TCR=10;TR=11;WE=111929429;WS=111929410;set=Platypus	GT:AD:AF:DP	1/1:3,11:0.79:14
chr9	111929421	rs10979724	G	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	111936732	rs10733569	G	A	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	111936788	rs10979727	C	T	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	111945049	rs3750450	T	G	1411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.372;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:382,115:0.23:497
chr9	111945166	rs10122682	A	G	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	111947704	rs12377767	C	T	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:40,92:0.70:132
chr9	111956494	rs10979741	C	T	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:50,169:0.77:219
chr9	111956599	rs3750447	G	A	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	111962418	rs7864511	G	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,46:0.82:56
chr9	112020668	rs745388	T	C	5413.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:88,253:0.74:341
chr9	112020713	rs893917	A	G	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	112025473	rs1982226	C	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	112041925	rs2014890	A	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-0.471;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr9	112082760	.	G	GCGCTGC	853.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=1.775;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:66,25:0.27:91
chr9	112151349	rs1371787	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	112170701	rs35463120	T	TAAAC	4874.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	112172477	rs2275699	T	G	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	112184972	rs111591001	C	CA	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-1.061;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:27,43:0.61:70
chr9	112199146	rs4978809	A	G	5944.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:113,283:0.71:396
chr9	112211182	rs35966698	C	CA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.957;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr9	112273733	rs61358126	A	G	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:30,89:0.75:119
chr9	112542725	rs201053095	G	GT	1114.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:19,53:0.74:72
chr9	112629397	rs7044189	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-1.210;QD=2.33;ReadPosRankSum=-0.799;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:135,39:0.22:174
chr9	112629444	rs376414086	CTGTG	C,CTGTGTGTGTGTGTG	1486.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=96;set=Intersection	GT:AF:DP	1/1:0.93:41
chr9	112629858	rs2769154	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:97,49:0.34:146
chr9	112898327	rs1475612	A	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	112899361	rs4978872	A	C	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr9	112900199	rs914358	T	C	10937.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr9	112918531	rs10759392	A	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	112918581	rs7862044	T	C	6156.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	112924558	rs2148989	A	T	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr9	112963504	rs10120707	A	G	22779.77	.	AC=2;AF=1.00;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	1/1:1,890:1.00:891
chr9	113006420	rs5843	A	G	3207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.63;ReadPosRankSum=-0.467;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:38,144:0.79:182
chr9	113007237	rs4135221	G	A	5432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.390;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.990;QD=13.97;ReadPosRankSum=1.259;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:127,262:0.67:389
chr9	113007289	rs4135220	T	G	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:52,128:0.71:180
chr9	113007319	rs4135219	TGAA	T	1549.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr9	113018755	rs1049927	T	C	2987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=1038;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.949;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:781,241:0.24:1022
chr9	113091653	rs10980325	A	C	158.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	113137562	rs138259328	TTCTGAG	T	23585.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.145;QD=44.42;ReadPosRankSum=0.483;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:3,528:0.99:531
chr9	113139489	rs2274485	C	G	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	113139783	rs2077800	G	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	113141815	rs992883	A	G	12128.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,484:1.00:484
chr9	113151713	rs2296779	T	C	3488.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:67,157:0.70:224
chr9	113166697	rs1410049	T	A	9226.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr9	113168501	rs41278435	A	G	11164.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:170,505:0.75:675
chr9	113169630	rs7046213	T	C	19655.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,755:1.00:755
chr9	113171262	rs16914997	G	A	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	113174025	rs41278439	T	C	3216.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:82,155:0.65:237
chr9	113174097	rs41278441	C	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr9	113189954	rs41279045	T	G	7053.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:133,338:0.72:471
chr9	113190203	rs76191498	A	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.79;ReadPosRankSum=-1.282;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr9	113191533	rs75212846	C	T	8247.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:159,386:0.71:545
chr9	113191597	rs76469101	G	A	6773.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:124,319:0.72:443
chr9	113192401	.	T	TTC	893.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.52;ReadPosRankSum=-0.818;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:10,28:0.74:38
chr9	113194127	rs17806670	A	G	3038.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:41,121:0.75:162
chr9	113194686	rs4545168	C	T	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:25,80:0.76:105
chr9	113199041	rs10980386	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.495;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:61,18:0.23:79
chr9	113206141	rs4304395	C	A	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr9	113207962	rs7847560	A	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	113208250	rs7863519	T	G	2668.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:44,114:0.72:158
chr9	113209195	rs1889323	T	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:98,40:0.29:138
chr9	113212205	rs2095294	G	A	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	113212454	rs10817021	A	T	2951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=2.367;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:384,183:0.32:567
chr9	113213726	rs4421419	A	G	14224.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr9	113218098	rs112071235	T	TAAAGA	2466.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	113228096	rs10980400	T	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:166,51:0.24:217
chr9	113233956	rs7860284	C	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	113234507	rs10817025	T	C	12741.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=25.85;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,493:1.00:493
chr9	113234618	rs34710785	CAG	C	14529.73	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr9	113244732	rs41296069	G	T	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,87:0.69:127
chr9	113245758	rs10817030	C	T	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	113261483	rs872665	C	T	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.215;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-1.211;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:154,57:0.27:211
chr9	113308284	rs2991363	A	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.350;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:134,46:0.26:180
chr9	113449271	rs7869057	G	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	113490776	rs10817087	C	T	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	113524511	rs147974075	AT	A	8269.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr9	113547001	rs572189	A	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.63;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	113547322	rs484010	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	113548111	.	C	CAT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.12;ReadPosRankSum=1.960;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr9	113550168	rs2766999	T	C	11782.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr9	113637662	rs955888	C	A	369.56	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr9	113637854	rs3739709	G	A	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=1.546;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:223,46:0.17:269
chr9	113800790	rs28700160	G	A	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-2.769;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:333,123:0.27:456
chr9	114090279	rs314452	A	G	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;ClippingRankSum=0.000;DB;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.618;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:611,146:0.19:757
chr9	114124456	.	G	GA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DP=376;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=1.102;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:259,48:0.16:307
chr9	114170785	rs79202070	TA	T	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=4.150;QD=2.39;ReadPosRankSum=3.012;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:120,63:0.34:183
chr9	114193095	rs12348365	A	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.68;ReadPosRankSum=-0.264;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr9	114202502	rs7860748	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr9	114235064	.	G	GA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.593;QD=2.56;ReadPosRankSum=3.119;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:76,28:0.27:104
chr9	114301585	rs10441737	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr9	114326557	rs138247149	T	TTTA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=34;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.12;ReadPosRankSum=1.030;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr9	114341376	rs17320055	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=6.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.135;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:58,20:0.26:78
chr9	114356659	rs3739703	C	T	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:134,69:0.34:203
chr9	114359624	rs1053959	C	A	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:163,67:0.29:230
chr9	114366028	rs966626	T	C	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:258,156:0.38:414
chr9	114366094	rs966627	G	C	4640.77	.	AC=1;AF=0.500;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	0/1:556,282:0.34:838
chr9	114371322	rs4978450	T	A	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.548;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:195,70:0.26:265
chr9	114371493	rs12351897	C	T	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:211,78:0.27:289
chr9	114393784	rs10980984	G	A	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-1.939;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:70,36:0.34:106
chr9	114394146	rs10980985	G	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr9	114394177	rs10980986	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.196;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr9	114449219	rs10537471	CT	C	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.755;QD=9.19;ReadPosRankSum=1.241;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:18,59:0.77:77
chr9	114454580	rs1475110	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	114659643	rs3780520	A	G	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	114659661	rs3780519	A	T	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	114688807	rs72757814	A	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	114803631	rs2281790	C	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	114803957	rs12553171	A	G	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	114811154	rs1980739	C	T	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	114814828	rs7034341	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	114814899	rs7034671	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	114919707	rs700105	A	G	5067.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	114986021	rs34621641	C	CAGAA	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	114994281	rs3983403	G	A	431.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=1.645;QD=43.13;ReadPosRankSum=-0.967;SOR=3.020;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr9	114994286	rs372535742	G	A	559.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=3.753;QD=43.06;ReadPosRankSum=-0.725;SOR=2.617;set=HC	GT:AD:AF:DP	0/1:1,12:0.92:13
chr9	114994290	rs370701025	AG	A	594.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=7.270;MLEAC=2;MLEAF=1.000;MQ=59.08;MQRankSum=4.131;QD=37.16;ReadPosRankSum=-0.811;SOR=3.092;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr9	114994294	.	GAGAAGAAAAGA	G	595.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=7.270;MLEAC=2;MLEAF=1.000;MQ=59.14;MQRankSum=4.131;QD=37.20;ReadPosRankSum=-0.761;SOR=3.092;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr9	115014799	rs10659246	G	GA	40	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	115051546	rs11792085	A	G	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	115052104	rs10121087	A	G	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	115060090	rs200517232	T	TA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.760;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.575;QD=3.04;ReadPosRankSum=-1.058;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr9	115060205	rs10981348	C	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	115060682	rs3808881	G	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	115092577	rs2418204	G	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	115092624	rs2900539	T	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	115095743	rs7040447	T	C	13887.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr9	115142330	rs35979933	CG	C	3839.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.77;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	115142507	rs7867831	A	G	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	115216222	rs10538330	GATTA	G	2999.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	115249262	rs6477940	T	C	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr9	115249433	rs7031191	T	C	8421.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:1,335:1.00:336
chr9	115450093	rs786970	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	115567015	rs139599865	A	ATG	1656.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	115567184	rs1891402	T	C	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	115580008	rs10117709	G	C	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	115598447	rs6477961	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	115600848	rs7023478	T	C	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	115648997	.	ACT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=-0.089;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr9	115649520	rs3802493	C	T	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	115760586	rs75939690	C	T	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.389;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	115811835	rs2274761	G	C	4622.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:66,209:0.76:275
chr9	115818949	rs2282076	A	T	9136.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:115,385:0.77:500
chr9	115913546	rs76861708	G	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	115925104	rs3810906	C	T	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	115928275	rs3810908	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	115934022	rs5900041	A	AACCTGGATT	1020.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr9	115936903	rs3827673	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	115950156	rs10465129	G	A	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr9	115950706	rs10435864	A	C	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr9	115983540	rs2233914	G	A	9201.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr9	115985499	rs4560868	G	C	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	115985587	rs4641140	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	115985607	rs5900047	TA	T	182.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.775;QD=7.92;ReadPosRankSum=-0.264;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr9	116044905	rs199502579	C	CTT	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=-1.349;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:3,20:0.87:23
chr9	116044998	rs11552582	A	G	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr9	116045311	rs77287785	GA	G	1194.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	116048755	rs4979231	G	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	116048874	rs4979232	A	G	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	116048977	rs10981714	T	C	10773.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr9	116050720	rs36114176	CT	C	196.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-1.599;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr9	116054040	rs2418249	C	T	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	116059733	rs3750535	A	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	116060124	rs3750534	T	C	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	116060221	rs3750533	C	T	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr9	116060487	rs3750532	T	C	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	116079271	rs2296076	A	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	116091077	rs3810920	A	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	116116483	rs10981762	A	G	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	116116626	rs10981763	C	G	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	116124454	.	G	GGT	62.14	.	AC=1;AF=0.500;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,1:0.50:2
chr9	116130725	rs2296074	T	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	116132092	rs818711	G	C	13496.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr9	116136198	rs1043836	C	T	19937.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:0,747:1.00:747
chr9	116153352	rs2761016	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	116153891	rs1800435	C	G	15735.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr9	116183301	rs818714	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	116190531	rs41297197	G	T	9555.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr9	116191667	rs41276817	G	C	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	116241707	rs7021491	T	C	6651.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.40;ReadPosRankSum=1.199;SOR=0.316;set=HC	GT:AD:AF:DP	1/1:1,251:1.00:252
chr9	116246535	rs12335991	C	G	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	116247994	rs56038206	G	A	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	116267829	rs72761971	A	G	8891.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr9	116269520	rs7870265	T	G	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	116269892	rs36062487	C	T	8096.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr9	116356430	rs147596194	G	T	14447.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr9	116356516	rs12341266	A	G	11716.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr9	116356529	rs10817493	C	G	12878.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr9	116359339	rs1051013	T	C	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	116764283	rs4978561	C	T	20584.77	.	AC=2;AF=1.00;AN=2;DB;DP=820;set=Intersection	GT:AD:AF:DP	1/1:0,803:1.00:803
chr9	116764883	rs3034072	C	CCT	23323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=1387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-3.428;QD=18.93;ReadPosRankSum=1.105;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:135,1097:0.89:1232
chr9	116765062	rs942286	G	T	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr9	116769515	rs4979321	C	T	8489.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr9	116770776	rs3748183	C	T	30565.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,697:1.00:697
chr9	116770785	rs3748182	G	A	30244.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,687:1.00:687
chr9	116770918	rs10817552	G	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	116778269	rs4979324	A	G	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	116794784	rs2116407	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	116823490	rs56699313	G	T	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-1.210;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:191,83:0.30:274
chr9	116840204	rs2251680	A	G	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,79:0.69:115
chr9	116856889	rs1465660	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	116857656	rs7036734	T	C	8013.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr9	116858625	rs6478062	T	G	15608.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:1,589:1.00:590
chr9	116859769	rs3810929	T	C	6728.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr9	116929987	rs141549766	G	A	3600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=865;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-1.374;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:616,244:0.28:860
chr9	116930194	rs2567706	A	G	2353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=942;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.432;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:732,201:0.22:933
chr9	116930240	rs147026086	G	A	1593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;ClippingRankSum=0.000;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-1.504;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:642,150:0.19:792
chr9	116930867	rs188197626	T	C	6442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=1588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-1.625;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:1147,423:0.27:1570
chr9	116931445	rs2808770	T	C	5116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=1266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.10;ReadPosRankSum=1.130;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:918,329:0.26:1247
chr9	116931666	rs2567705	A	T	23489.77	.	AC=2;AF=1.00;AN=2;DB;DP=894;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,878:1.00:878
chr9	116931737	rs2808771	C	T	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:580,229:0.28:809
chr9	116940418	rs13295426	A	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.316;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:88,25:0.22:113
chr9	116940489	rs13295729	C	T	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:248,81:0.25:329
chr9	116940594	rs3810930	A	G	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:314,117:0.27:431
chr9	116945381	rs41306500	A	G	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:17,50:0.75:67
chr9	116945454	rs10759688	A	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	116958216	rs2567711	C	T	15260.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr9	116967184	rs77309503	G	A	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr9	116967263	rs2567719	T	G	11947.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.43;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	116967263	.	TCCATCCC	GCCATCCC,GCCATCCT	1499	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=33;MMLQ=24;MQ=60.0;NF=79,52;NR=56,38;PP=363,1499;QD=2.94645342628;SC=GAGTGCACACTCCATCCCGGA;SbPval=0.52;Source=Platypus;TC=135;TCF=79;TCR=56;TR=135,90;WE=116967278;WS=116967253;set=Platypus	GT:AF:DP	0/1:1.00:135
chr9	116967270	rs77564189	C	T	5064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=-0.171;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:82,231:0.74:313
chr9	116967952	rs2567720	T	C	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr9	116971709	rs7026363	G	A	1947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=-0.932;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:27,90:0.77:117
chr9	116980052	rs10982110	C	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.635;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:286,85:0.23:371
chr9	116997994	rs2015408	T	C	20031.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	1/1:0,774:1.00:774
chr9	117002517	rs2014134	C	T	3749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=1198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.914;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:897,286:0.24:1183
chr9	117002787	rs41305461	T	A	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:50,122:0.71:172
chr9	117008025	rs41278645	A	G	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:28,108:0.79:136
chr9	117026581	rs4978576	C	G	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:33,126:0.79:159
chr9	117027165	rs41312228	A	G	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:24,96:0.80:120
chr9	117033096	rs2636866	C	T	15767.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr9	117033219	rs10118121	T	C	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:223,75:0.25:298
chr9	117037820	rs10513241	A	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.682;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:59,24:0.29:83
chr9	117037915	rs12685514	T	C	12067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.71;ReadPosRankSum=1.774;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:196,572:0.74:768
chr9	117044458	rs1628968	A	G	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:22,77:0.78:99
chr9	117044751	rs2787330	T	C	24923.77	.	AC=2;AF=1.00;AN=2;DB;DP=977;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,945:1.00:945
chr9	117044843	rs116496505	C	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:75,30:0.29:105
chr9	117050909	rs56060009	C	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:172,70:0.29:242
chr9	117051614	rs1249742	A	G	5387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.05;ReadPosRankSum=-0.747;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:64,252:0.80:316
chr9	117052738	rs11386651	G	GT	1027.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	117054195	rs10429546	C	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr9	117064306	rs1546049	T	C	8817.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr9	117064345	rs1546048	G	A	5163.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:99,246:0.71:345
chr9	117064405	rs10817586	C	G	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:45,140:0.76:185
chr9	117066823	rs10817590	C	T	4337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.63;ReadPosRankSum=0.562;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:52,194:0.79:246
chr9	117072656	rs1000744	C	A	296.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr9	117073006	rs1249756	C	T	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:87,181:0.68:268
chr9	117085526	rs147960186	G	A	5027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-0.454;QD=16.22;ReadPosRankSum=1.529;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:84,226:0.73:310
chr9	117085635	rs74594458	T	C	9518.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:109,427:0.80:536
chr9	117086226	rs1111796	A	G	11774.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:198,574:0.74:772
chr9	117093729	rs10759691	A	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr9	117094073	rs113974644	T	C	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:86,176:0.67:262
chr9	117103973	rs2250242	A	G	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-1.914;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:24,43:0.64:67
chr9	117106190	rs3748179	C	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:37,92:0.71:129
chr9	117110046	rs3748178	C	T	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:20,109:0.84:129
chr9	117166338	rs6478078	G	C	23139.77	.	AC=2;AF=1.00;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	1/1:0,890:1.00:890
chr9	117170310	rs2274160	C	T	7222.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr9	117188566	rs10817610	C	T	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	117266337	rs35122928	TA	T	989.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.530;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=9.119;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=1.923;QD=9.70;ReadPosRankSum=0.979;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:22,80:0.78:102
chr9	117266965	rs2297815	C	T	10944.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:1,417:1.00:418
chr9	117390300	rs7031094	C	A	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	117428960	rs1055207	T	C	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:17,45:0.73:62
chr9	117430611	rs1359992	A	T	4972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-0.306;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:97,235:0.71:332
chr9	117433685	rs2296948	C	T	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:53,166:0.76:219
chr9	117433811	rs3215861	C	CA	5829.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:89,180:0.67:269
chr9	117552885	rs3810936	T	C	9018.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr9	117553249	rs4246905	T	C	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	117554504	.	TACACACACACAC	T,TAC	1101.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.99;SOR=2.066;set=HC	GT:AD:AF:DP	1/2:0,10,19:0.34,0.66:29
chr9	117568049	rs7030574	C	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr9	117656372	.	G	A	482.77	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:106,33:0.24:139
chr9	117692259	rs56067579	G	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr9	117792426	rs13286441	G	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr9	117792583	rs13321	C	G	13336.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr9	117797359	rs3215885	A	AT	314.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr9	117797394	rs1330361	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr9	117803185	rs35141770	A	AAC,AACAC	3089.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=83;set=Intersection	GT:AF:DP	1/2:0.29,0.70:80
chr9	117804667	rs7021589	T	C	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.174;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:204,87:0.30:291
chr9	117808785	rs2104772	T	A	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	117815273	rs11794797	G	A	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	117835899	rs1138545	C	T	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-1.468;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:331,107:0.24:438
chr9	117836188	rs2210108	A	G	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	117844239	rs2989519	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr9	117846450	rs1755639	A	G	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:27,99:0.79:126
chr9	117846570	rs2274836	C	T	2188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.414;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:434,150:0.26:584
chr9	117846580	rs1061494	T	C	10433.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:177,461:0.72:638
chr9	117848394	rs1757095	T	C	30915.77	.	AC=2;AF=1.00;AN=2;DB;DP=1204;set=Intersection	GT:AD:AF:DP	1/1:0,1192:1.00:1192
chr9	117849314	rs2992147	T	C	22887.77	.	AC=1;AF=0.500;AN=2;DB;DP=1426;set=Intersection	GT:AD:AF:DP	0/1:372,1029:0.73:1401
chr9	117853022	rs944510	C	T	22017.77	.	AC=1;AF=0.500;AN=2;DB;DP=1408;set=Intersection	GT:AD:AF:DP	0/1:392,1003:0.72:1395
chr9	117853103	rs10982521	C	T	23589.77	.	AC=1;AF=0.500;AN=2;DB;DP=1520;set=Intersection	GT:AD:AF:DP	0/1:427,1080:0.72:1507
chr9	118054182	rs2285316	G	A	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:71,167:0.70:238
chr9	118164375	rs370103137	CT	C	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=7.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=2.615;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:230,78:0.25:308
chr9	118949998	rs12375498	C	T	2005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.978;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.570;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:475,147:0.24:622
chr9	118969686	rs11268296	T	TTATTTAAATAG	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr9	118989926	rs13290387	G	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	119106881	rs7020782	C	A	17220.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr9	119158814	rs8456	T	C	1426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.584;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:471,126:0.21:597
chr9	119160748	rs8653	T	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-0.580;QD=4.23;ReadPosRankSum=-0.655;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr9	119187839	rs7518	C	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:34,64:0.65:98
chr9	119199485	rs7034542	T	A	484.88	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:4,24:0.86:28
chr9	119199820	rs7018569	C	G	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	119382768	rs2295741	A	G	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.042;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:303,98:0.24:401
chr9	119462112	rs3019	C	T	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	119495697	rs7863560	T	C	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	119582872	rs3765537	T	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	119738890	rs2274762	T	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr9	119770480	rs3761845	C	T	7102.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:139,331:0.70:470
chr9	119770551	rs7036098	G	A	8835.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr9	119903506	rs10817999	C	T	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr9	119903807	rs57782747	A	C	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	119977051	rs7856971	G	T	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:40,113:0.74:153
chr9	119977077	rs4543613	T	C	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	120053776	rs7848630	T	C	8003.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr9	120466929	rs5900307	CA	C	2052.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:15,129:0.90:144
chr9	120471058	rs2770148	G	A	6213.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr9	121930307	rs1043379	G	A	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	122001000	rs2274157	G	A	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	122004545	rs3831067	GAGGACAGGGAT	G	595.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.04;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	122257627	rs10984560	C	T	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	122275247	rs10984573	A	T	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	123151679	rs4836820	A	G	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	123152099	rs2297457	C	G	9800.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr9	123152241	rs2297456	A	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	123156742	rs10984902	G	A	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:41,139:0.77:180
chr9	123156761	rs4410972	G	C	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	123170733	rs4837768	C	G	4579.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	123171755	rs2297454	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr9	123280950	rs2095064	T	C	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr9	123291036	rs4836822	C	G	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	123313246	rs954214	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	123330813	rs4837782	T	C	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	123342259	rs932975	C	A	12931.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr9	123342275	rs932974	A	G	9992.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr9	123370345	rs991121	C	G	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.754;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr9	123374639	rs2416760	T	C	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-1.116;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:113,49:0.30:162
chr9	123476542	rs369989873	ACGGCGG	A	3116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=2.058;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=5.931;QD=7.20;ReadPosRankSum=2.295;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:328,105:0.24:433
chr9	123550027	rs7026635	G	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:238,88:0.27:326
chr9	123583192	rs1060817	A	G	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-3.593;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:146,39:0.21:185
chr9	123586581	rs35903891	CA	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=2.126;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:59,34:0.37:93
chr9	123586737	rs10760117	T	G	2706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=722;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.194;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:526,186:0.26:712
chr9	123591493	.	T	TA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-1.607;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:121,27:0.18:148
chr9	123631642	rs3753029	G	C	2837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.983;ClippingRankSum=0.000;DB;DP=861;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.258;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:643,216:0.25:859
chr9	123632045	rs1056567	A	G	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.815;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.560;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:283,73:0.21:356
chr9	123632829	rs4836833	G	C	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-2.150;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:499,150:0.23:649
chr9	123636121	rs10985070	C	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	123670505	rs7866003	A	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	123671520	rs2239657	G	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	123676396	rs2416804	G	C	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	123676482	rs2416805	T	C	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	123676699	rs758959	C	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	123715210	rs41314047	A	AT	65.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr9	123716103	rs41258306	T	C	2078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.379;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:360,139:0.28:499
chr9	123725776	rs41312903	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.649;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr9	123725926	rs17612	T	G	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.219;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:407,127:0.24:534
chr9	123726029	rs41312901	A	G	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.540;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:192,69:0.26:261
chr9	123731408	rs10985112	G	A	1545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-2.142;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:438,129:0.23:567
chr9	123737040	rs2269067	G	C	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.266;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:134,36:0.21:170
chr9	123744252	rs41260544	A	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:127,46:0.27:173
chr9	123753600	rs41311867	G	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:130,34:0.21:164
chr9	123758632	rs12683026	A	G	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.307;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.290;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chr9	123776390	rs41309856	G	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:93,33:0.26:126
chr9	123778688	rs41309850	A	C	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:297,90:0.23:387
chr9	123782299	rs2230214	G	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.635;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:145,58:0.29:203
chr9	123783934	rs10985126	T	C	2256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.568;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:545,174:0.24:719
chr9	123783993	rs10985127	A	G	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=4.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-1.809;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:254,89:0.26:343
chr9	123787697	rs140753263	T	TACACACACAC,TACACACACACAC	1929.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=42.88;SOR=1.845;set=HC	GT:AD:AF:DP	1/2:0,36,9:0.80,0.20:45
chr9	123792906	rs3815467	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr9	123812548	rs36223101	G	A	4463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=-0.633;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:89,206:0.70:295
chr9	123850642	rs147018954	C	A	6466.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:61,289:0.83:350
chr9	123850770	rs10818503	G	A	13465.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr9	123876029	rs3831035	TA	T	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.199;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr9	123880570	rs41273412	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr9	123888242	rs10760150	G	T	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr9	123904538	rs148672807	T	C	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.136;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:197,53:0.21:250
chr9	123908345	rs7023214	G	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	123917355	rs10818512	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	123923411	rs139754979	A	AGT	6298.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:4,175:0.98:179
chr9	123924667	rs10586591	CAT	C	1138.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr9	123927477	rs4836841	T	A	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	123928486	rs2273988	T	C	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	123928569	rs1535655	G	A	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr9	123929686	rs72760251	T	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:77,24:0.24:101
chr9	123929710	rs10818513	A	G	5350.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	123929770	rs61745682	C	T	7017.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:105,318:0.75:423
chr9	123937240	rs72760256	G	A	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-1.234;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:180,53:0.23:233
chr9	123955765	rs6478504	A	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	124043867	rs10985200	C	T	15556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=979;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=-1.601;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:249,721:0.74:970
chr9	124048298	rs12683459	G	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-0.888;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:168,42:0.20:210
chr9	124073176	rs306785	T	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	124088768	rs306769	T	C	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	124089173	rs216784	C	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	124091135	rs306771	G	A	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	124218133	rs3747845	C	T	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	124222267	rs2289068	A	G	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	124241369	rs871670	T	G	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.659;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:131,34:0.21:165
chr9	124241603	rs871672	G	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr9	124622502	rs4381015	C	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr9	124632735	rs4384052	C	T	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:17,97:0.85:114
chr9	124633096	rs4370602	G	A	3853.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:69,176:0.72:245
chr9	124736218	rs35609526	C	T	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:10,68:0.87:78
chr9	124895467	rs12380610	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	124895500	rs10985546	A	G	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	124906723	rs3818638	T	C	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:14,65:0.82:79
chr9	124910582	rs3793616	C	A	5987.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:86,275:0.76:361
chr9	124914613	rs4679	C	T	8550.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:127,388:0.75:515
chr9	124929006	rs2274747	G	C	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr9	124929211	rs1411444	A	G	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:42,145:0.78:187
chr9	124972042	rs989798	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.469;QD=1.91;ReadPosRankSum=-0.572;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:150,35:0.19:185
chr9	124976152	rs2274748	G	C	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.184;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:397,110:0.22:507
chr9	124976475	rs62574050	C	G	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	124990773	rs113188211	C	CG	3798.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr9	125133479	rs1236913	T	C	27138.77	.	AC=2;AF=1.00;AN=2;DB;DP=1063;set=Intersection	GT:AD:AF:DP	1/1:0,1056:1.00:1056
chr9	125144145	rs1238420	A	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr9	125315376	rs11412445	C	CT	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=2.221;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	125315393	rs12684786	G	A	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	125315557	rs1831370	T	C	11237.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:1,430:1.00:431
chr9	125315778	rs1411271	G	C	17207.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr9	125316033	rs1341042	T	C	15611.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr9	125316042	rs1341043	T	C	16215.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr9	125316179	rs1341044	T	G	6551.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	125316350	rs1411272	C	T	9589.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr9	125316567	rs11427164	T	TA	150.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=11.59;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr9	125317424	rs10733658	G	T	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	125317485	rs10760239	G	T	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	125317661	rs1041355	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	125330125	rs10739614	C	G	5977.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	125330678	rs10985704	T	G	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	125330739	rs1999182	G	A	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	125330859	rs1999183	G	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	125377087	rs972925	A	G	14206.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=1.204;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:2,560:1.00:562
chr9	125377505	rs1329957	A	G	11033.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:1,426:1.00:427
chr9	125378014	rs7470572	T	G	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	125438390	.	GGT	G	162.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr9	125486968	rs2215530	G	A	11936.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr9	125512193	rs10760252	C	A	22724.77	.	AC=2;AF=1.00;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	1/1:0,876:1.00:876
chr9	125512575	rs4838012	G	A	22223.77	.	AC=2;AF=1.00;AN=2;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.79;QD=25.66;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,866:1.00:866
chr9	125512770	rs10985760	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.86;QD=26.56;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	125512788	rs10818740	G	A	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.73;QD=48.04;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	125512795	rs10818741	G	C	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=41.52;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	125512826	rs28670025	G	A	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.93;QD=26.42;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	125563301	rs375810030	G	A	24851.77	.	AC=2;AF=1.00;AN=2;DB;DP=967;set=Intersection	GT:AD:AF:DP	1/1:0,960:1.00:960
chr9	125617395	rs5900548	TA	T	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.991;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.926;QD=3.96;ReadPosRankSum=1.137;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:55,55:0.50:110
chr9	125620105	rs5900549	C	CA	581.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	125637471	rs2596699	A	T	6751.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	125637648	rs2596698	T	C	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	125659520	rs2793005	T	C	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	125673051	rs1147321	T	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	125747038	rs614274	G	T	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr9	125759861	rs138316961	TTTTC	T	1163.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.11;QD=41.56;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	125760863	rs587364	T	C	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	125761051	rs605546	G	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	125797918	rs71989983	CGTGTGTGTGT	C,CGT	1272.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=67;set=Intersection	GT:AF:DP	1/1:1.00:34
chr9	125832879	rs803733	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	125861695	rs700080	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	125861888	rs700081	A	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	125920376	rs803736	G	A	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	125920807	rs142605162	GA	G	494.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.371;QD=16.49;ReadPosRankSum=0.463;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr9	125922854	rs11437080	C	CA	583.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	125932152	rs147443012	C	CAT	1877.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:32,98:0.75:130
chr9	126028395	rs7863265	C	G	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	126118517	rs72433015	AGCAGAGC	A	3873.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	126125318	rs2808415	C	A	15423.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:1,595:1.00:596
chr9	126131110	rs2488603	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	126132329	rs7034379	T	C	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	126132919	rs33984675	G	A	10592.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr9	126133497	rs13290763	C	T	19625.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,743:1.00:743
chr9	126133547	rs2488602	T	C	12630.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:1,475:1.00:476
chr9	126135715	rs2488601	A	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	126136247	rs2488599	A	G	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	126137676	rs4838053	G	A	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	126144746	rs2491348	T	C	7555.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	126144758	rs2808409	T	C	7733.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	126145907	rs2797946	C	A	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr9	126146197	rs2808411	C	G	12205.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr9	126202551	rs10739633	A	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	126217128	.	C	CT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=60.82;MQRankSum=3.177;QD=2.13;ReadPosRankSum=-1.359;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr9	126220283	rs71390436	C	CT	805.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-0.232;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:14,53:0.79:67
chr9	126439100	rs12377595	T	G	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	126783426	rs140229756	C	A	26534.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.911;ClippingRankSum=0.000;DB;DP=1042;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.09;ReadPosRankSum=1.206;SOR=0.268;set=HC	GT:AD:AF:DP	1/1:1,1016:1.00:1017
chr9	126794642	rs143803976	C	CG	1659.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	127101924	rs10760354	C	T	25399.77	.	AC=2;AF=1.00;AN=2;DB;DP=994;set=Intersection	GT:AD:AF:DP	1/1:0,985:1.00:985
chr9	127177736	rs2236386	G	C	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	127215167	rs59108500	C	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	127215344	rs7861556	A	G	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	127215772	rs72616654	C	G	8517.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	127220952	rs12347840	T	C	18268.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr9	127228596	rs4838184	A	G	7947.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr9	127228824	rs4838185	T	C	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	127230118	rs10818977	C	T	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	127230891	rs10760365	G	A	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr9	127231774	rs1570580	C	G	18730.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,731:1.00:731
chr9	127244955	rs915034	G	A	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	127255448	rs2297605	G	A	10010.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr9	127287158	rs200630959	G	GA	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=2.619;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:189,39:0.17:228
chr9	127495508	rs10760374	C	T	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	127557152	rs7856071	G	T	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	127561559	rs2281923	C	T	9686.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr9	127563364	rs913231	G	A	8363.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr9	127563431	rs151217528	A	C	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	127566378	rs7874348	A	G	13719.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr9	127572710	rs7020260	C	G	8075.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr9	127615705	rs10986467	A	G	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	127615976	rs3814132	G	A	9205.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	127615995	rs3814131	A	G	8172.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	127616323	rs10760380	G	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	127616537	rs12375547	A	G	21316.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	1/1:0,822:1.00:822
chr9	127618776	rs2274970	A	G	10047.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr9	127618839	rs10760381	C	G	14147.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr9	127619625	rs35041146	G	GC	5584.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	127619922	rs944952	T	C	7839.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr9	127620480	rs10593927	CAT	C	2217.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	127637215	rs581558	T	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	127643456	rs687434	T	C	12003.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,469:1.00:469
chr9	127643989	rs3214725	T	TG	3298.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	127644882	rs596231	G	A	19530.77	.	AC=2;AF=1.00;AN=2;DB;DP=773;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,767:1.00:767
chr9	127652621	rs622280	G	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr9	127661521	rs750884	T	C	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=1.638;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	127661526	rs750883	A	C	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=1.511;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	127661645	rs634710	G	A	11871.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:1,460:1.00:461
chr9	127674200	rs583134	A	C	10297.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr9	127765856	.	G	GA	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=0.000;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.320;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:288,70:0.20:358
chr9	127818276	rs589292	C	T	7552.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr9	127904740	rs974826	G	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	127923013	rs4837010	TG	CT	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	127951072	rs57163595	C	CAATAAT	697.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=46.52;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr9	127951863	rs466994	G	A	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.365;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	127962916	rs501963	G	A	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	127969785	rs420423	G	A	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	127975583	rs359588	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	128069955	rs41306461	C	T	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	128074807	rs432757	T	C	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr9	128201098	rs7864593	A	G	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	128206717	rs907501	C	G	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	128327891	rs545320	A	C	6104.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	129097817	rs1230752	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	129184091	rs2286888	T	C	15486.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,603:1.00:603
chr9	129246177	rs2286886	T	C	8921.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr9	129453229	rs2277158	A	G	17769.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr9	129455587	rs13295990	G	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	129595895	rs3118994	T	C	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	129728336	rs480796	G	A	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	129740101	rs10819259	G	T	10412.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr9	129831455	rs3832609	AC	A	1078.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	129831659	rs1281158	T	A	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr9	129854199	rs2297866	G	A	7019.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr9	129928600	rs946430	A	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	129930892	rs2297865	A	G	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	129940379	rs3739556	T	C	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	130166382	rs10819287	C	G	7333.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	130243534	rs371152397	AT	A	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-2.301;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:50,30:0.38:80
chr9	130287287	rs3765602	C	A	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	130331257	rs151147273	CCCGCTCCCG	C	1561.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	130341095	rs4240419	C	T	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	130341253	rs4240420	A	G	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr9	130423271	rs372510099	CA	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.608;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=7.672;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.880;QD=1.04;ReadPosRankSum=1.310;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:138,46:0.25:184
chr9	130446493	rs4836575	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	130457332	rs138071672	T	TTGA	6991.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.06;MQRankSum=1.869;QD=34.96;ReadPosRankSum=-0.291;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:12,188:0.94:200
chr9	130457365	.	A	ATGG	2284	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=18;MMLQ=27;MQ=61.84;NF=1;NR=106;PP=2284;QD=21.3925233645;SC=GATGATGATGATGATGATGGT;SbPval=0.89;Source=Platypus;TC=140;TCF=3;TCR=137;TR=107;WE=130457373;WS=130457355;set=Platypus	GT:AD:AF:DP	0/1:33,107:0.76:140
chr9	130466784	.	C	CA	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.976;QD=1.71;ReadPosRankSum=-0.388;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:72,28:0.28:100
chr9	130475011	rs522328	T	C	19898.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr9	130475442	rs497632	A	C	17461.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,671:1.00:671
chr9	130477160	rs550045	G	A	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	130477768	rs504434	G	A	22370.77	.	AC=2;AF=1.00;AN=2;DB;DP=877;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,857:1.00:857
chr9	130485618	rs537881	G	A	25652.77	.	AC=2;AF=1.00;AN=2;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,986:1.00:986
chr9	130486384	rs836333	C	T	3509.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	130486385	rs35761147	G	GC	1968.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:6,76:0.93:82
chr9	130486915	rs2256139	T	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	130488494	rs538927	C	T	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr9	130489189	rs578997	C	T	12001.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr9	130489558	rs472144	A	G	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	130489743	rs13298768	A	G	5209.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr9	130491726	rs555022	T	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	130491998	rs557630	A	G	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	130492039	rs557749	G	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	130493513	rs482095	A	G	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr9	130493724	rs505268	C	T	7493.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	130494667	rs534652	G	A	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	130494811	rs515182	T	C	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	130494957	rs538066	T	C	22723.77	.	AC=2;AF=1.00;AN=2;DB;DP=879;set=Intersection	GT:AD:AF:DP	1/1:0,877:1.00:877
chr9	130495633	rs564754	C	G	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr9	130495890	rs3739812	A	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	130496415	rs482712	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	130504070	rs514024	G	A	9507.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr9	130524817	rs3962613	C	T	14151.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr9	130571225	.	AT	A	457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.469;QD=4.32;ReadPosRankSum=0.381;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:46,60:0.57:106
chr9	130616621	rs35400405	G	A	5578.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	130630639	rs913986	A	G	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	130634944	rs743537	T	C	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	130635540	rs2767398	A	G	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	130648680	rs913983	G	A	10952.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr9	130649111	rs4837202	G	A	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	130657020	rs5900777	GC	G	4784.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr9	130660232	rs3758330	T	C	14407.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr9	130670652	rs1043012	A	G	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	130670903	rs10760511	C	A	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	130672106	rs7026378	A	G	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	130672221	rs10739700	C	T	26026.77	.	AC=2;AF=1.00;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	1/1:0,995:1.00:995
chr9	130690412	rs10760515	G	C	8432.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr9	130698029	rs7997	G	C	7514.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr9	130698043	rs6781	A	G	8485.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr9	130699917	rs2274424	G	A	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	130700251	rs6478802	T	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr9	130707081	rs2274426	A	G	20755.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:0,802:1.00:802
chr9	130710726	rs4837212	A	G	10041.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr9	130710791	rs4837213	T	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	130715922	rs2417062	A	G	20313.77	.	AC=2;AF=1.00;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	1/1:0,787:1.00:787
chr9	130829039	rs1539350	A	G	14134.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.33;ReadPosRankSum=-1.075;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,556:1.00:558
chr9	130854127	rs10739712	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	130860866	rs947624	T	C	11466.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr9	130861039	rs947623	A	G	6408.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	130864676	rs7859709	T	C	16314.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,637:1.00:637
chr9	130868312	rs7864867	G	C	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	130868831	rs1418420	T	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	130869499	rs4837239	A	T	16955.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr9	130883511	rs2040004	C	T	14019.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,557:1.00:557
chr9	130886906	rs4837241	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	130889571	rs4837242	A	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	130889600	rs4837243	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	130889705	rs4837244	G	A	13655.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,532:1.00:532
chr9	130890449	rs11283643	A	AGGTGCGCGGC	23545.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=47.76;ReadPosRankSum=1.718;SOR=0.670;set=HC	GT:AD:AF:DP	1/1:1,492:1.00:493
chr9	130913608	rs12006030	G	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	130914434	rs2232629	A	G	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	130922952	rs1539351	G	C	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	130931586	rs10987905	C	A	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr9	130941741	rs11788797	C	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	131001846	rs34036148	CGT	C	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.135;QD=7.56;ReadPosRankSum=0.353;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr9	131040842	.	C	CA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-0.690;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:94,20:0.18:114
chr9	131085373	rs3003601	G	C	14354.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,569:1.00:569
chr9	131185295	rs2072401	G	C	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	131185357	rs56988335	C	CTGTCCACTG	4303.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	131186328	rs78986616	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	131186401	rs7038316	C	T	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	131186581	rs2286813	C	T	9777.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr9	131186956	rs28567931	A	G	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	131191338	rs2072399	G	T	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	131193605	rs1009851	T	C	9201.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr9	131196334	rs2072398	G	A	8091.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	131196334	.	GTT	ATA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=5;HapScore=1;MGOF=0;MMLQ=26;MQ=60.0;NF=54;NR=29;PP=2947;QD=20;SC=AGGGAGGGGGGTTGTTTAACT;SbPval=0.52;Source=Platypus;TC=92;TCF=60;TCR=32;TR=83;WE=131196344;WS=131196324;set=Platypus	GT:AD:AF:DP	1/1:9,83:0.90:92
chr9	131196336	rs2072397	T	A	8091.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	131196695	rs7258	C	T	11847.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	131196704	rs7259	G	A	12034.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr9	131196905	rs60807982	TGG	T	4395.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=43.10;SOR=1.212;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	131197896	rs7040989	G	A	17389.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,685:1.00:685
chr9	131219398	rs12683827	G	C	8240.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr9	131219877	rs4240429	T	C	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	131222541	rs6478832	A	G	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	131235321	rs4512487	A	G	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	131243750	.	T	TA	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.772;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.864;QD=10.67;ReadPosRankSum=0.252;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:11,35:0.76:46
chr9	131245175	rs11290748	CT	C	487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.915;QD=2.82;ReadPosRankSum=-0.307;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:99,74:0.43:173
chr9	131247176	rs4075146	C	T	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	131247626	rs3924786	T	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	131250084	rs372216616	AC	A	15427.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=45.24;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr9	131250086	.	ACAC	A	15691.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=44.45;SOR=1.268;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr9	131250091	rs201089175	C	A	10718.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.583;QD=31.34;ReadPosRankSum=0.084;SOR=0.670;set=HC	GT:AD:AF:DP	1/1:27,315:0.92:342
chr9	131250111	rs9632915	C	A	18159.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=40.63;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr9	131267212	rs56164320	C	G	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	131277769	rs112821508	CTTATTTT	C	4175.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=44.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	131285955	rs2275260	A	G	9490.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr9	131289600	rs869455	G	T	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	131298590	rs3763600	A	G	2932.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.010;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=0.079;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,116:0.99:117
chr9	131303522	rs10760563	G	A	8382.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr9	131331320	rs2152833	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	131337389	rs2297768	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	131337661	rs2297769	A	C	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	131340306	rs4837280	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	131340639	rs1890103	T	C	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	131344607	rs5900808	GA	G	282.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	131346218	rs10760566	A	C	8432.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr9	131346479	rs4240431	A	G	8085.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	131347165	rs4836615	G	A	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.74;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	131347169	rs4837284	C	T	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=1.237;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	131350112	rs4837286	A	G	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	131360750	rs2227864	C	T	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	131374165	rs7024498	C	G	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr9	131375701	rs1415568	A	G	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	131379967	rs2227862	C	T	8056.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr9	131380149	rs3750332	C	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	131380994	rs4837290	T	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	131388643	rs3737308	C	T	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	131389060	rs10694437	C	CAA	3479.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	131392553	rs7866175	G	A	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	131397479	rs4837291	G	A	14655.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr9	131398343	rs947182	T	A	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	131398636	rs10760570	C	T	10738.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr9	131403096	rs2298045	A	G	15450.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:2,605:1.00:607
chr9	131418828	rs4837292	A	C	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	131452121	.	C	CG	3652.73	.	AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.36;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	131452126	.	GCC	G	4370.73	.	AC=2;AF=1.00;AN=2;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.67;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	131452137	.	C	CG	4632.73	.	AC=2;AF=1.00;AN=2;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=43.71;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	131453331	rs4837293	G	A	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	131455760	rs10739728	C	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	131455903	rs4836618	C	T	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	131456159	.	C	CT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.000;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:89,21:0.19:110
chr9	131456385	rs10637043	G	GTA	1689.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:12,54:0.82:66
chr9	131465167	rs1572915	A	G	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	131468251	rs1572916	T	C	7508.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	131475951	rs4837297	T	C	6819.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:1,267:1.00:268
chr9	131477544	rs7854055	G	A	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr9	131479023	rs10739729	T	C	13831.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr9	131482467	rs3750325	T	C	10896.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr9	131483749	rs2900268	T	A	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	131502112	rs2298044	A	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	131502440	rs3818931	G	C	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr9	131502460	rs7027146	G	T	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	131505092	rs10739731	A	C	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	131515547	rs8507	G	T	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr9	131550722	rs1891076	C	G	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	131553768	rs10760577	A	G	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	131570178	rs45609236	T	C	22740.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.40;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,524:1.00:524
chr9	131570183	rs7862546	C	G	22325.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.94;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr9	131580998	rs2293969	C	T	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	131583170	rs2280845	T	C	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	131585069	rs2280843	A	G	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr9	131585205	rs2997919	T	C	194.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	131585216	rs2977994	G	T	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	131585994	rs2997918	T	C	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	131586558	.	GGT	G	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=1.948;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=4.234;QD=1.45;ReadPosRankSum=-1.510;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:101,24:0.19:125
chr9	131586918	rs2997917	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	131587240	rs2293968	G	A	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	131588652	rs2997914	T	C	8251.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr9	131589234	rs2977991	C	G	7068.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr9	131592193	rs2997906	T	C	12032.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,450:1.00:450
chr9	131599008	rs2759009	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	131600111	rs2280841	T	C	11259.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr9	131602897	.	AT	A	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.448;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:70,31:0.31:101
chr9	131670919	rs3750319	T	C	16332.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,629:1.00:629
chr9	131715001	rs371313511	CA	C	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.578;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:152,66:0.30:218
chr9	131726683	rs72758898	C	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.66;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	131743701	.	CT	C	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.234;QD=1.40;ReadPosRankSum=-0.907;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:201,75:0.27:276
chr9	131768786	rs150379581	G	A	20154.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:0,780:1.00:780
chr9	131772389	rs3750340	T	G	8804.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr9	131821267	rs17452603	G	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	131857630	rs2229419	C	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	131860901	rs3118635	G	T	12519.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr9	131862073	rs3118638	G	A	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	131864950	rs746873	C	T	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	131865493	rs3124498	C	T	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	131866388	rs2768630	C	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.28;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	131871144	rs2768629	A	G	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	131871249	rs2541163	A	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	131871435	rs2541162	A	C	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	131872847	rs11278777	GCGCCGC	G	6153.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	131873256	rs3118625	A	C	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr9	131882706	rs3124504	G	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.597;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr9	131882761	rs9409311	T	C	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	131885279	rs3118628	G	A	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	131896999	rs3124509	C	T	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	131898880	rs1536548	A	G	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	131899846	rs3118631	T	C	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	131904608	rs3124514	C	T	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	131904617	.	TTG	T	102.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:37,8:0.18:45
chr9	131905177	rs2254230	T	G	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	131905814	rs913272	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	131940019	rs184457	G	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	132084885	rs913771	A	G	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	132377624	rs2275898	G	A	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr9	132377728	rs918166	C	T	13903.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:1,544:1.00:545
chr9	132377900	rs918165	C	T	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr9	132377967	rs75970720	C	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	132396281	rs10819551	G	C	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr9	132396655	rs1558873	A	G	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	132401824	rs2302780	G	A	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	132402908	rs2241247	C	G	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	132404304	rs4837396	C	G	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	132428435	.	G	GCGGGGC	2234.73	.	AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=42.98;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	132501881	rs2302821	A	C	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	132511199	rs10988492	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	132572629	rs1220509	T	G	439.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=-1.886;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr9	132580901	rs1801968	C	G	12949.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr9	132615077	rs2296786	C	T	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	132618578	rs4836674	T	C	8672.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.496;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=3.480;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.12;ReadPosRankSum=0.842;SOR=0.574;set=HC	GT:AD:AF:DP	1/1:1,331:1.00:332
chr9	132618807	rs7862315	G	A	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	132620224	rs2417150	A	G	9036.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr9	132620364	rs10819568	T	C	11797.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr9	132620458	rs10819569	C	A	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.25;SOR=1.554;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	132620464	rs10760638	C	T	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.15;SOR=1.582;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	132620620	rs2174156	T	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	132620707	rs2134601	T	C	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	132620990	rs2174157	T	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	132623293	rs1503375	C	T	15255.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr9	132623868	rs10115249	T	C	12878.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,508:1.00:508
chr9	132623917	rs10124224	C	A	8266.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr9	132625417	rs4837419	CA	TG	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	132625602	rs2900279	T	C	13578.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,539:1.00:539
chr9	132627480	rs913319	C	T	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	132627723	rs913320	G	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	132630231	rs913325	A	G	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	132630664	rs10602985	TGAC	T	15419.73	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr9	132631680	rs6478920	T	C	21522.77	.	AC=2;AF=1.00;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	1/1:0,851:1.00:851
chr9	132632162	rs5900871	G	GC	1520.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	132635653	rs1809959	A	G	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.171;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr9	132635944	rs2296787	C	G	13697.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr9	132636031	rs4332226	A	G	22447.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,505:1.00:505
chr9	132636031	.	AGT	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=23;MQ=59.95;NF=105;NR=128;PP=2947;QD=20;SC=GAGGTGAGCCAGTGGCCTCGG;SbPval=0.53;Source=Platypus;TC=243;TCF=109;TCR=134;TR=233;WE=132636041;WS=132636021;set=Platypus	GT:AD:AF:DP	1/1:10,233:0.96:243
chr9	132636033	rs4415421	T	C	22447.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,496:1.00:496
chr9	132652677	rs60841376	G	GGA	865.75	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr9	132658044	rs2047837	T	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	132658078	rs71738364	G	GT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.147;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:117,32:0.21:149
chr9	132662786	rs1023000	C	T	6548.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr9	132671359	rs3215850	T	TG	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.69;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	132672319	rs7855720	G	A	11092.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr9	132678195	rs7867211	G	A	8962.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr9	132681277	rs5900875	CT	CTT,C	252.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	0/1:0.66:29
chr9	132681619	rs1054874	C	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	132686186	rs4836680	A	G	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	132689671	rs4837429	A	G	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.24;SOR=1.882;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	132719627	rs139055249	C	T	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	132720720	rs11394970	G	GA	4626.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.62;ReadPosRankSum=1.892;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:5,209:0.98:214
chr9	132816398	rs5900882	T	TC	10411.73	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=31.55;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr9	132838063	rs11446412	C	CT,CTT	1271.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.173;SOR=0.684;set=HC	GT:AD:AF:DP	1/2:25,45,37:0.42,0.35:107
chr9	132841808	rs6478942	G	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	132845723	rs7855078	T	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	132845986	rs10819597	T	C	6412.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	132848653	rs11399718	C	CT	2174.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.98;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	132861593	.	C	CA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.896;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr9	132862830	rs10081664	AA	TC	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	132863035	rs2277196	G	C	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr9	132866883	rs7868997	T	C	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	132866906	rs887536	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	132872686	rs4837460	A	G	9319.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:2,366:0.99:368
chr9	132887249	rs11316087	TA	T	168.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.06;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	132891113	rs2286794	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	132891113	.	GGT	AGC	810	.	AC=2;AF=1.00;AN=2;BRF=0.52;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=5;NR=14;PP=810;QD=45.4456776243;SC=GTGTGAATCGGGTCGGCTGCT;SbPval=0.58;Source=Platypus;TC=19;TCF=5;TCR=14;TR=19;WE=132891123;WS=132891103;set=Platypus	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	132891115	rs7853219	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	132897231	rs1003416	G	A	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	132903743	rs56985005	G	A	1412.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.519;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=8.195;MLEAC=2;MLEAF=1.000;MQ=60.46;MQRankSum=0.363;QD=21.41;ReadPosRankSum=-1.666;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:2,64:0.97:66
chr9	132903767	rs11299315	TA	T	670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.467;QD=6.91;ReadPosRankSum=2.080;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:27,70:0.72:97
chr9	132904268	rs74994578	G	A	14200.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:1,545:1.00:546
chr9	132904345	rs7870010	G	A	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	132935121	rs184684756	C	A	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=41.33;SOR=3.698;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	132935126	rs188775356	C	T	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=41.35;SOR=3.471;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	132962801	rs7037407	A	T	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	132962816	rs7022964	T	C	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	132963115	rs887534	T	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	132963129	rs887535	G	A	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	132963350	rs4837482	T	C	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	132988709	rs2277200	T	G	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr9	133028155	rs12336255	G	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	133028196	rs12336285	G	A	7576.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	133028204	rs72240442	CGGCAGT	C	4560.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:4,177:0.98:181
chr9	133028476	rs71387337	A	AC	3668.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	133048501	rs6478957	G	A	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	133058082	rs10739777	G	A	10603.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,406:1.00:407
chr9	133058197	rs7045548	C	A	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	133069946	rs28435140	A	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	133260316	rs7858563	T	G	8470.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	133260353	rs11244109	G	A	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	133263750	rs7849616	T	C	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	133263923	rs7849839	T	C	9074.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr9	133264059	rs35750041	GC	G	775.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr9	133264096	rs11244127	G	A	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	133270740	rs6597641	T	C	7996.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	133280580	rs1475732	C	G	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	133281691	rs11244201	C	T	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	133283255	rs10736862	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	133284310	rs10793975	G	A	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	133294244	rs13294886	G	A	9938.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr9	133305012	rs59218805	G	A	19001.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.64;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,741:1.00:741
chr9	133305103	rs6597679	G	A	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	133307984	rs2282217	C	T	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	133309014	rs7860727	T	C	29050.77	.	AC=2;AF=1.00;AN=2;DB;DP=1138;set=Intersection	GT:AD:AF:DP	1/1:1,1116:1.00:1117
chr9	133324400	rs11243372	A	G	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	133324502	rs10123082	A	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	133325472	rs4740158	T	C	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	133327439	rs1760275	T	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	133327835	rs1615006	G	A	8586.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr9	133342270	rs11243414	A	C	25390.77	.	AC=2;AF=1.00;AN=2;DB;DP=1008;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,975:1.00:975
chr9	133346226	rs10901072	C	T	8907.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr9	133346983	rs641510	A	G	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	133498229	.	TA	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=2.032;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr9	133553993	rs7021384	C	T	10180.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr9	133554065	rs7030674	A	G	5888.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	133573185	.	G	GT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=4.796;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.183;QD=1.77;ReadPosRankSum=0.966;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr9	133710722	rs11433465	G	GC	1023.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.19;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	133710740	rs11433464	G	GC	1623.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.60;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	133710804	rs7866590	T	C	8508.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.54;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	133710819	rs11433463	T	TC	9378.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=1.126;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr9	133779730	rs12552821	G	A	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	133779756	rs11244186	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	133787225	rs6597650	A	G	6250.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	133884820	rs3739512	T	G	20369.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,792:1.00:792
chr9	133911598	rs2275132	A	G	14069.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,539:1.00:539
chr9	133911706	rs2275131	C	T	18419.77	.	AC=2;AF=1.00;AN=2;DB;DP=711;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,706:1.00:706
chr9	133911821	rs2275130	C	T	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	133936334	rs11244268	G	A	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	133936381	rs3824398	G	A	8678.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr9	133936571	rs3739510	C	G	10269.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr9	133942624	rs3765569	A	G	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	133944522	rs2275142	C	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	133946774	rs4740409	C	T	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	133946849	rs34910694	C	CT	6290.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr9	133946909	rs10901344	G	A	8692.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.172;QD=25.05;ReadPosRankSum=-0.474;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:2,345:0.99:347
chr9	133946915	rs10901345	C	G	13920.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=43.78;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr9	133948049	rs2275140	A	G	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	133967295	rs710074	C	A	7833.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr9	133967310	rs10696088	T	TCA	6412.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	133972131	rs2478784	G	T	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	133981491	rs2872823	G	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	133981629	rs2315075	T	C	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	133981721	rs2315076	T	C	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	133986836	rs353528	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	133986980	rs353526	T	G	7539.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr9	133987060	rs353525	G	A	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	133996460	rs353511	T	G	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	133996503	rs353510	T	A	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	134008695	.	T	TG	55.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.000;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr9	134008696	.	T	G	316.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.244;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr9	134020092	rs103612	C	T	14216.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr9	134062770	.	CT	C	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=3.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-1.204;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:71,45:0.39:116
chr9	134064345	rs2274427	T	C	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	134067795	rs4602942	G	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.10;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	134076950	rs56349054	C	CA,CAA	498.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.799;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=-1.239;SOR=1.911;set=HC	GT:AD:AF:DP	1/2:4,16,11:0.52,0.35:31
chr9	134136515	rs352952	A	G	18119.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:0,706:1.00:706
chr9	134136677	rs352951	A	G	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr9	134140113	.	C	CT	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.707;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr9	134165311	rs75017027	G	T	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.367;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	134165888	rs11244356	T	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	134322324	rs2966340	G	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	134323240	rs2994064	A	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	134334588	rs34553878	A	G	9503.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr9	134346315	rs4310250	T	C	33493.77	.	AC=2;AF=1.00;AN=2;DB;DP=1297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,1284:1.00:1284
chr9	134348807	rs4276727	G	A	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	134348818	rs5900941	TG	T	2649.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	134350323	rs10736851	C	G	11197.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr9	134350458	rs10751478	C	T	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr9	134350647	rs10793873	T	C	8121.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr9	134351065	rs7858488	G	T	10580.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=1.713;SOR=0.301;set=HC	GT:AD:AF:DP	1/1:1,412:1.00:413
chr9	134351343	rs11243403	C	T	29118.77	.	AC=2;AF=1.00;AN=2;DB;DP=1143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,1112:1.00:1112
chr9	134358657	rs10901061	G	C	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	134358736	.	A	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.179;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=178.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=2.434;SOR=7.327;set=HC	GT:AD:AF:DP	0/1:68,38:0.36:106
chr9	134359918	rs10751480	G	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	134360015	rs10793874	G	T	4345.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.83;ReadPosRankSum=-0.120;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:2,173:0.99:175
chr9	134361318	rs3808829	C	A	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	134361581	rs10793875	T	A	13583.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr9	134361627	rs10901062	G	A	6027.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	134366773	.	G	C	12782.77	.	AC=2;AF=1.00;AN=2;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr9	134367704	.	G	C	7231.77	.	AC=2;AF=1.00;AN=2;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr9	134382673	rs6597501	C	T	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	134384277	rs11243404	T	C	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	134384500	rs11999204	C	T	7721.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	134384513	rs28447664	A	G	6906.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	134385436	rs2296949	A	G	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	134385599	rs2018621	A	G	8619.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr9	134386659	rs34159422	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	134386675	rs4740163	T	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	134386744	rs10901065	T	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	134386903	rs10901066	G	A	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	134387315	rs10901068	C	G	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	134387488	rs3739494	T	C	10412.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,418:1.00:418
chr9	134394163	rs1547768	A	G	15953.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:1,630:1.00:631
chr9	134394646	rs2010635	A	G	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	134395628	rs2277152	C	G	9137.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr9	134395687	rs2277153	C	A	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	134397624	rs4740165	C	T	13562.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,531:1.00:531
chr9	134398534	rs3739495	T	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	134401335	rs2296957	C	T	7011.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	134404199	rs4740260	A	G	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	134406071	rs7867616	C	G	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	134406131	rs3904960	G	T	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	134406647	rs4740261	A	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	134406650	rs7041225	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	134433463	rs4740167	T	C	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	134458109	rs3765545	C	A	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	134458148	rs3765544	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	134464158	rs2296953	G	C	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	134464431	rs3824397	G	C	6265.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	134465398	rs3818581	T	C	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	134467456	rs2296951	A	G	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	134467578	rs3215862	GA	G	4994.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	134473655	rs11243446	C	T	13466.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr9	134477387	rs3842210	AG	A	1796.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	134479293	rs7037668	A	G	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	134480272	rs72054278	GGT	G	368.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:117,28:0.19:145
chr9	134497450	rs7023385	C	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	134514251	rs11243461	C	T	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	134949155	.	G	GA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-0.144;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:105,22:0.17:127
chr9	135073877	rs3824574	C	T	18934.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr9	135074103	rs3739928	G	A	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	135102254	rs2149171	C	T	7765.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr9	135105964	rs4962173	A	G	9749.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=3.330;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.75;ReadPosRankSum=-0.639;SOR=0.465;set=HC	GT:AD:AF:DP	1/1:1,393:1.00:394
chr9	135106054	rs2274854	T	A	17107.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,662:1.00:662
chr9	135117178	rs12342966	T	G	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	135139901	rs1056899	T	C	5166.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	135147275	.	G	GT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=6.868;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.142;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr9	135152543	rs34769225	TA	T	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.466;QD=1.29;ReadPosRankSum=0.188;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:171,52:0.23:223
chr9	135153668	rs11243704	C	T	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	135153673	rs11243705	T	C	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	135163562	rs35545441	C	CA	2155.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.69;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	135164107	rs2274563	A	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	135172163	rs2296868	T	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	135172412	rs2296869	A	G	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	135173454	rs3831154	C	CA	4734.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.42;SOR=1.665;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	135173685	rs2296871	T	C	8008.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr9	135173758	rs6597570	G	T	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	135187128	rs2296872	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	135203530	rs3739922	A	C	9768.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr9	135205006	rs882709	G	C	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	135205959	rs1011378	A	G	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	135206028	rs1536662	T	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	135218047	rs11790312	A	G	16914.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,663:1.00:663
chr9	135221597	rs497650	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	135262013	rs45610937	G	A	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr9	135263573	rs556386	G	T	9355.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr9	135265876	rs471890	T	C	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	135271987	rs1166321	T	C	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.939;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr9	135272061	rs5900975	GT	G	306.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=0.788;SOR=0.473;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr9	135273507	rs569288	G	A	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	135273607	rs504525	C	G	9812.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr9	135273759	rs5900976	G	GA	2225.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	135276710	rs553323	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	135277130	rs3739915	C	A	12941.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr9	135374898	rs562350	T	C	28002.77	.	AC=2;AF=1.00;AN=2;DB;DP=1102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,1083:1.00:1083
chr9	135388799	rs577416	G	A	8124.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr9	135412913	rs13286286	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	135702490	rs13299768	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	135730078	rs214640	T	G	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	135739226	rs2251448	T	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	135764081	rs1062218	A	G	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	135776034	rs1076160	C	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	135862632	rs633153	C	T	16926.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr9	135865359	rs681470	A	G	19414.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,764:1.00:764
chr9	135930735	rs645841	T	C	6885.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr9	135961809	rs679779	T	C	9302.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	135974079	rs1062356	G	C	7565.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	135974100	rs886017	G	A	8298.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr9	135976664	rs34018822	C	T	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr9	135976698	rs35108384	G	A	12869.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,490:1.00:490
chr9	135977583	rs2519091	C	T	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	135978153	rs694881	G	C	8313.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr9	135979751	rs598499	C	G	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	135985796	rs3761824	C	T	5029.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	136030458	rs651453	C	T	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	136080746	rs1052517	A	G	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	136081173	.	C	T	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.604;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=3.269;MLEAC=1;MLEAF=0.500;MQ=54.73;MQRankSum=-5.717;QD=13.72;ReadPosRankSum=-0.045;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr9	136081174	.	A	G	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.015;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=3.330;MLEAC=1;MLEAF=0.500;MQ=54.81;MQRankSum=-5.779;QD=13.47;ReadPosRankSum=0.153;SOR=1.469;set=HC	GT:AD:AF:DP	0/1:41,25:0.38:66
chr9	136081176	.	C	T	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=5.156;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-5.957;QD=12.79;ReadPosRankSum=0.748;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:44,25:0.36:69
chr9	136081180	.	G	C	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.622;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=9.067;MLEAC=1;MLEAF=0.500;MQ=55.64;MQRankSum=-6.208;QD=12.09;ReadPosRankSum=1.573;SOR=2.077;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr9	136081185	.	T	A	1215.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=13.370;MLEAC=1;MLEAF=0.500;MQ=56.09;MQRankSum=-5.399;QD=13.21;ReadPosRankSum=0.916;SOR=2.475;set=HC	GT:AD:AF:DP	0/1:60,32:0.35:92
chr9	136081186	.	G	GA	1248.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.968;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=13.370;MLEAC=1;MLEAF=0.500;MQ=56.09;MQRankSum=-5.399;QD=13.57;ReadPosRankSum=1.038;SOR=2.475;set=HC	GT:AD:AF:DP	0/1:60,32:0.35:92
chr9	136081191	.	T	G	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=14.102;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-5.326;QD=12.48;ReadPosRankSum=1.501;SOR=2.338;set=HC	GT:AD:AF:DP	0/1:66,36:0.35:102
chr9	136081193	.	G	GCA	1355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.179;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=16.214;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-5.457;QD=12.91;ReadPosRankSum=1.626;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:69,36:0.34:105
chr9	136081196	rs150469509	G	A	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.403;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=20.383;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-5.620;QD=11.76;ReadPosRankSum=1.862;SOR=2.737;set=HC	GT:AD:AF:DP	0/1:77,39:0.34:116
chr9	136081261	rs137892402	AG	A	5649.73	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:278,191:0.41:469
chr9	136081283	rs147134232	C	T	9811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.18;MQRankSum=-8.412;QD=16.41;ReadPosRankSum=-2.334;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:343,255:0.43:598
chr9	136081289	rs146582704	T	C	9941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=54.24;MQRankSum=-8.603;QD=15.71;ReadPosRankSum=-2.194;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:361,272:0.43:633
chr9	136081364	.	GC	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=4;HapScore=1;MGOF=39;MMLQ=24;MQ=51.38;NF=0;NR=72;PP=2962;QD=20;SC=ATTAGAAGGCGCCCTAGACCA;SbPval=1.0;Source=Platypus;TC=185;TCF=15;TCR=170;TR=72;WE=136081372;WS=136081346;set=Platypus	GT:AD:AF:DP	1/0:113,72:0.39:185
chr9	136081391	rs6597608	G	A	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	136081416	.	G	C	821	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=1;MGOF=54;MMLQ=25;MQ=51.72;NF=26;NR=44;PP=821;QD=12.2253030364;SC=GAGCCCCAGAGCCCATCGCAG;SbPval=0.68;Source=Platypus;TC=176;TCF=71;TCR=105;TR=70;WE=136081424;WS=136081406;set=Platypus	GT:AD:AF:DP	1/0:106,70:0.40:176
chr9	136081436	.	C	T	602	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=1;MGOF=57;MMLQ=23;MQ=51.45;NF=16;NR=35;PP=602;QD=12.4857100499;SC=GCCCAGAGCGCGGAGCCCCAG;SbPval=0.75;Source=Platypus;TC=138;TCF=51;TCR=87;TR=51;WE=136081444;WS=136081426;set=Platypus	GT:AD:AF:DP	0/1:87,51:0.37:138
chr9	136081466	rs6597609	C	T	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	136081829	rs11244037	C	T	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	136083580	rs2073870	T	G	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	136083638	rs72769499	C	G	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.048;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=4.004;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-4.054;QD=12.25;ReadPosRankSum=2.659;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:58,90:0.61:148
chr9	136083801	rs4310274	A	G	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	136131289	rs8176748	C	T	21285.77	.	AC=2;AF=1.00;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	1/1:0,814:1.00:814
chr9	136131347	rs8176745	G	A	18986.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr9	136131437	rs8176742	C	T	13075.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr9	136131472	rs8176740	A	T	16731.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,622:1.00:622
chr9	136131576	rs55727303	C	T	18052.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr9	136131783	rs8176737	C	T	4629.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=-0.291;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:2,184:0.99:186
chr9	136131783	.	CGT	TGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=1;HapScore=1;MGOF=12;MMLQ=21;MQ=60.0;NF=59;NR=71;PP=2947;QD=20;SC=AGCCGCCGGCCGTGCACCCCT;SbPval=0.52;Source=Platypus;TC=133;TCF=60;TCR=73;TR=130;WE=136131793;WS=136131773;set=Platypus	GT:AD:AF:DP	1/1:3,130:0.98:133
chr9	136131785	rs8176736	T	C	4433.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.84;ReadPosRankSum=-0.517;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:4,182:0.98:186
chr9	136131846	rs7873416	T	C	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	136132608	rs8176726	C	T	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	136132633	rs2073824	A	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	136132707	rs2073825	A	T	7401.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	136132873	rs8176720	T	C	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	136132957	rs8176718	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	136185077	rs9411507	T	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	136185358	rs544622	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.63;QD=23.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	136201470	rs563666	C	A	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	136213521	rs616836	T	C	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	136214955	rs553877	A	G	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	136218590	rs484248	CA	AG	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	136223221	.	GCCCCGCACCCCGCACCCCGCA	G	1104.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.58;MQRankSum=-1.376;QD=39.45;ReadPosRankSum=0.558;SOR=0.252;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr9	136223366	rs523304	G	A	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	136223541	rs143037947	C	T	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	136227260	rs12763	A	G	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	136234124	rs1179033	A	G	9109.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr9	136237783	rs4962046	C	A	14328.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr9	136260696	rs41306714	G	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	136268084	rs3124747	A	G	8063.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr9	136272148	.	CCTT	C	20902.73	.	AC=2;AF=1.00;AN=2;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr9	136274056	.	CTG	C	168.73	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr9	136291539	rs3118668	A	G	2286.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	136291594	rs28515121	G	A	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	136291621	rs28757785	A	T	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	136295290	rs3124773	A	C	7155.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.104;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	136301982	rs2301612	C	G	10995.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr9	136303253	rs2028002	T	C	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	136311017	rs652600	G	A	9545.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr9	136324239	rs1055432	C	A	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr9	136325160	rs2301614	G	A	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	136328657	rs3124765	T	C	22257.77	.	AC=2;AF=1.00;AN=2;DB;DP=890;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,872:1.00:872
chr9	136340200	rs2073935	T	G	5620.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	136379890	rs17758315	A	G	10344.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:2,410:1.00:412
chr9	136385437	rs9802272	A	G	13125.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr9	136385453	rs9802273	A	G	9950.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr9	136404775	.	A	ACGGCTGTCCCGGCTGTCCCGGCTGTCCCGGCTGTCC	1662.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=97.81;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	136409457	rs9802736	A	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	136409580	rs9802778	T	G	7009.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	136412170	rs2073874	C	T	18780.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,734:1.00:734
chr9	136412236	rs2073875	A	T	16431.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,635:1.00:635
chr9	136412255	rs2073876	A	C	13764.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr9	136412346	rs2073878	C	T	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	136412382	rs2073879	T	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	136518097	rs77905	A	G	9232.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr9	136522187	rs1611131	A	G	14083.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr9	136532107	rs7854480	G	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	136536633	rs2797840	G	A	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	136536679	rs129932	G	A	8663.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:1,342:1.00:343
chr9	136536793	rs2519123	C	G	10084.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr9	136555629	rs886016	T	C	11521.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr9	136559460	rs2073817	C	T	6544.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.252;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=-0.667;SOR=0.253;set=HC	GT:AD:AF:DP	1/1:1,255:1.00:256
chr9	136561303	rs2502739	A	T	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	136561567	rs2427998	G	T	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	136570005	rs2510247	T	C	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	136573648	rs495464	A	T	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	136594864	rs2427988	A	G	10797.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr9	136599315	rs2488553	G	A	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	136629256	rs66574029	CTG	C	486.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=2.421;QD=1.58;ReadPosRankSum=-0.272;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:266,43:0.14:309
chr9	136635409	rs590614	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	136640226	rs2488559	G	A	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	136641313	rs2077065	G	C	6774.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	136648535	rs2488563	T	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	136648565	rs680458	G	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	136648606	rs1468128	G	A	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.28;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr9	136648611	rs56145872	A	AG	4786.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=23.93;ReadPosRankSum=0.337;SOR=0.681;set=HC	GT:AD:AF:DP	1/1:5,195:0.97:200
chr9	136648746	rs13283160	G	C	8375.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.30;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr9	136653436	rs56019925	C	T	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	136654497	rs2072059	G	A	8619.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr9	136654553	rs10821524	A	C	3701.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	136726626	rs7853626	C	G	6955.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	136916969	rs369609588	ATG	A	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr9	137004907	rs28581991	T	C	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	137005023	rs11556390	C	T	26154.77	.	AC=2;AF=1.00;AN=2;DB;DP=1021;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:1,1009:1.00:1010
chr9	137007298	rs28648812	G	A	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	137013582	rs28695913	G	A	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	137019511	rs28703244	T	C	15408.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,586:1.00:586
chr9	137021803	rs28522840	C	T	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	137271318	rs35196866	C	A	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	137271408	rs34133915	G	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	137271454	rs34189335	A	G	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	137293761	rs2234753	G	A	9638.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr9	137299949	rs1805352	C	A	17779.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.281;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=0.798;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,679:1.00:680
chr9	137320855	rs3118570	G	T	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	137321156	rs1536475	A	G	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	137325822	rs3132293	T	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	137328286	rs1805343	G	A	11783.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,461:1.00:461
chr9	137592961	rs4341231	T	C	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	137593099	rs138579182	G	A	6238.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	137630568	rs3109677	C	T	8014.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr9	137630587	rs3128612	T	C	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr9	137642478	rs12685946	A	G	23374.77	.	AC=2;AF=1.00;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	1/1:0,911:1.00:911
chr9	137642577	rs12686426	T	C	21517.77	.	AC=2;AF=1.00;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	1/1:3,836:1.00:839
chr9	137645585	rs73558066	G	A	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	137645648	rs10123014	TC	CT	8813.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	137645662	rs73558067	C	T	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr9	137646046	rs11103501	A	G	8657.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr9	137646217	rs11103502	G	A	6412.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	137658417	rs41306800	G	A	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	137658722	rs4842158	G	A	2530.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.65;ReadPosRankSum=-0.952;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:2,105:0.98:107
chr9	137658730	rs4842159	T	C	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.46;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	137659005	rs4842160	A	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	137660194	rs4842162	G	T	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr9	137660375	rs10776900	A	G	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr9	137715150	rs3128599	AT	TG	11630.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	137717501	rs72774480	C	T	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	137717610	rs7868111	T	C	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	137742018	.	A	ATATCACACCTCCCAGGAAGCACGG	31020.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DP=972;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.55;MQRankSum=1.167;QD=48.02;ReadPosRankSum=2.469;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:4,642:0.99:646
chr9	137742124	rs62571442	G	A	35917.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.128;ClippingRankSum=0.000;DB;DP=1432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.23;MQRankSum=-0.793;QD=25.12;ReadPosRankSum=-1.473;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:1,1429:1.00:1430
chr9	137742496	.	TGGGATCAGACCTCCCAGGGAGCACGGGATCACACCTCCCAGGAAAGCAC	T	12008.73	.	AC=2;AF=1.00;AN=2;DP=1002;set=Intersection	GT:AD:AF:DP	1/1:11,493:0.98:504
chr9	137772792	rs3128627	C	T	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	137801314	rs2989734	A	G	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	137801416	rs2989735	T	C	10293.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr9	137801800	rs1071583	T	C	12576.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:2,499:1.00:501
chr9	137804360	rs2274845	A	G	17481.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,678:1.00:678
chr9	137804830	rs2070622	G	C	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	137806329	rs11421281	T	TC	22729.73	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr9	137806334	rs2989721	A	G	22728.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,502:1.00:502
chr9	137806344	rs3012788	C	T	20661.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.22;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr9	137806487	rs2989722	G	A	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	137806783	rs3012789	G	A	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.28;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	137808427	rs2382714	T	A	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	137968919	rs61043559	G	GAA	18337.73	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=44.95;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr9	137978552	rs4446800	A	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	137978638	rs695156	T	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	137982127	rs500461	T	C	9261.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr9	137982232	rs56337838	T	G	1970.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.45;MQRankSum=0.357;QD=27.37;ReadPosRankSum=0.430;SOR=0.677;set=HC	GT:AD:AF:DP	1/1:6,66:0.92:72
chr9	137982234	rs10672761	G	GTT	1479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=62.47;MQRankSum=0.573;QD=20.27;ReadPosRankSum=1.106;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:21,52:0.71:73
chr9	137988675	rs655559	T	C	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	138236031	rs914398	A	G	15045.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=-0.523;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:2,579:1.00:581
chr9	138236212	rs914397	T	G	3823.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.405;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.67;ReadPosRankSum=-0.938;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,154:0.99:155
chr9	138378856	rs2078266	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	138379002	rs1975518	T	G	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.15;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr9	138437869	rs62578292	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.99;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	138438976	rs78161279	G	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.20;QD=43.34;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	138438980	rs4006724	G	T	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.31;QD=46.15;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	138438982	rs4006725	T	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.39;QD=41.54;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	138439005	rs504061	A	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.39;QD=26.97;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	138439189	rs148884427	G	GC	21944.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=44.15;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,497:1.00:497
chr9	138439190	rs62578296	G	T	21953.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=45.45;SOR=1.020;set=HC	GT:AD:AF:DP	1/1:0,483:1.00:483
chr9	138439806	rs72766543	C	T	10457.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=45.27;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr9	138439809	rs72766544	T	C	10457.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=44.50;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	138439904	rs72766546	C	T	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	138440554	rs55695858	G	C	9914.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.38;QD=44.86;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	138440562	rs3178137	C	T	10986.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=42.09;SOR=1.250;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	138440624	rs3827835	G	C	39862.77	.	AC=2;AF=1.00;AN=2;DB;DP=889;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.37;QD=44.89;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,888:1.00:888
chr9	138440641	rs2853652	T	C	27884.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=1075;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;MQRankSum=-0.376;QD=25.96;ReadPosRankSum=-0.013;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:2,1072:1.00:1074
chr9	138440726	rs3827838	C	T	31054.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,701:1.00:701
chr9	138440726	.	CCA	TCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=4;HapScore=1;MGOF=53;MMLQ=23;MQ=59.96;NF=152;NR=200;PP=2947;QD=20;SC=CCCATGACCCCCATGTCCTCC;SbPval=0.52;Source=Platypus;TC=363;TCF=157;TCR=206;TR=352;WE=138440736;WS=138440716;set=Platypus	GT:AD:AF:DP	1/1:11,352:0.97:363
chr9	138440728	rs3827839	A	G	31245.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,677:1.00:677
chr9	138440748	rs3827840	C	T	22505.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.08;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr9	138440756	rs3827841	G	A	19510.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.45;SOR=1.149;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr9	138441685	rs112851559	G	GC	7276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.299;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=51.56;MQRankSum=0.958;QD=17.92;ReadPosRankSum=2.959;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:139,267:0.66:406
chr9	138441760	rs7859414	C	A	6865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.789;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.54;MQRankSum=5.980;QD=15.82;ReadPosRankSum=5.383;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:122,312:0.72:434
chr9	138453811	rs697448	A	G	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	138516531	rs7466817	G	C	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	138516570	rs58631066	CTTTTTTTTTTTTT	C	1244.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;QD=42.92;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	138518010	rs1333240	A	G	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	138557256	rs492708	C	T	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	138586198	rs572335	G	A	11546.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr9	138586309	rs484524	A	G	23050.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=973;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.29;ReadPosRankSum=-1.081;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:2,947:1.00:949
chr9	138586457	rs548911	T	C	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	138586966	rs3119932	GC	AA	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	138587203	rs2769033	A	G	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	138587220	rs2483364	T	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	138590138	rs506498	T	C	8365.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,320:1.00:321
chr9	138590347	rs529976	C	T	9486.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr9	138590680	rs474061	G	C	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	138590928	rs471525	C	T	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	138591230	rs558113	C	T	9330.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr9	138591266	rs559326	A	G	9128.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr9	138594266	rs5901089	A	AC	4554.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	138606581	rs141291153	C	CGG	12155.73	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:2,475:1.00:477
chr9	138606586	rs2385007	T	C	21161.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.404;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=-5.890;QD=45.41;ReadPosRankSum=1.550;SOR=0.304;set=HC	GT:AD:AF:DP	1/1:1,465:1.00:466
chr9	138642912	rs10122976	C	A	7300.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr9	138644203	rs10735239	T	C	8825.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr9	138645716	rs12378616	C	T	9763.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr9	138646881	rs4842032	C	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	138648813	.	GTCCCCACCC	G	2985	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=4;HapScore=1;MGOF=5;MMLQ=27;MQ=61.3;NF=10;NR=270;PP=2985;QD=20;SC=CTCACAGGGGGTCCCCACCCT;SbPval=0.65;Source=Platypus;TC=297;TCF=12;TCR=285;TR=280;WE=138648876;WS=138648803;set=Platypus	GT:AD:AF:DP	1/1:17,280:0.94:297
chr9	138648829	rs13286338	C	G	16213.77	.	AC=2;AF=1.00;AN=2;DB;DP=773;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.67;QD=42.44;SOR=1.953;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr9	138648837	rs59909130	A	C	16203.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.83;QD=42.75;SOR=2.000;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr9	138648838	.	G	A	16180.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.84;QD=42.69;SOR=2.000;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr9	138648847	.	A	AC	16194.73	.	AC=2;AF=1.00;AN=2;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;QD=42.84;SOR=2.016;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr9	138648851	.	C	CTCCCATCT,CCCCCACCCTCTCCCATCT	16966.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=578;set=Intersection	GT:AF:DP	1/1:1.00:389
chr9	138650122	.	C	CAGGCTGCCCCGTGGGCCTCAGCCGAGACACAGGTGTGGCCAGGTGCAGGCTGCCCCATGGGCCTCAGCCGAGACACAGGTGTGGCCAGGTGT	4221.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.18;MQRankSum=2.129;QD=222.20;ReadPosRankSum=0.178;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:3,16:0.84:19
chr9	138662309	rs10776844	A	G	11722.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,458:1.00:458
chr9	138662661	rs10858172	G	A	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	138669261	rs914428	G	A	17936.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,682:1.00:682
chr9	138676328	.	GCTCCCTCCCTCC	G	2488.73	.	AC=2;AF=1.00;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	138706844	rs3739465	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	138707074	rs3739464	G	A	9923.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr9	138707727	rs913342	C	G	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	138715621	rs3739463	G	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	138754219	rs55684126	CT	C	423.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=0.140;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr9	138754582	rs2039330	A	C	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	138816898	rs4842048	T	C	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	138816906	rs4842049	T	C	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.84;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	138816947	rs11103223	G	A	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	138817000	rs11103224	T	C	10730.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr9	138817003	rs11103225	C	G	10762.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.03;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	138817178	rs10776854	C	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	138837958	rs2297691	C	T	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	138838140	rs7028495	T	C	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	138839888	rs2297689	C	T	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	138898893	rs4842070	C	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	138899222	.	TAC	T	22612.73	.	AC=2;AF=1.00;AN=2;DP=615;set=Intersection	GT:AD:AF:DP	1/1:2,543:1.00:545
chr9	138899253	rs56162840	G	GCA	11765.73	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr9	138903671	rs9626	A	G	19235.77	.	AC=2;AF=1.00;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	1/1:1,751:1.00:752
chr9	138904997	rs2280485	T	C	24242.77	.	AC=2;AF=1.00;AN=2;DB;DP=947;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,930:1.00:930
chr9	138905136	rs2280486	C	T	9041.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr9	138905884	rs11103273	T	C	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr9	138908250	rs2275107	C	T	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	138927108	rs183405924	C	A	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	138927183	rs149084098	T	C	7988.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr9	139008287	rs71508837	C	T	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	139008803	rs3739466	T	G	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	139010319	rs1717447	A	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	139094773	rs2274115	A	G	3873.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.83;ReadPosRankSum=-0.837;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:2,154:0.99:156
chr9	139096622	rs369430724	T	C	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	139137626	rs79849109	C	T	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	139142710	rs62579871	G	A	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	139142808	rs66470520	T	C	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr9	139221798	rs76115134	T	C	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=1.285;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	139221808	rs144733220	ACCCCCTC	A	2568.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	139222174	rs28495820	T	C	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	139222232	rs62579957	G	A	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.67;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	139222249	rs62579958	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	139230292	rs28447209	T	G	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	139230585	rs28583929	T	C	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	139243334	rs28429551	T	A	8264.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr9	139249991	.	T	C	715	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=1;HapScore=1;MGOF=6;MMLQ=24;MQ=57.11;NF=25;NR=5;PP=715;QD=24.9923737516;SC=GGTGACACGTTCTGGGGGAGG;SbPval=0.56;Source=Platypus;TC=30;TCF=25;TCR=5;TR=30;WE=139249999;WS=139249987;set=Platypus	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	139252495	rs3812547	G	A	27439.77	.	AC=2;AF=1.00;AN=2;DB;DP=1091;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,1081:1.00:1081
chr9	139252603	rs139501733	C	T	9203.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr9	139301583	rs3087886	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	139302015	.	TAAA	T	516.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.544;QD=20.68;ReadPosRankSum=-0.755;SOR=0.195;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr9	139302049	rs11145915	A	T	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	139302094	rs4880155	C	G	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	139303301	rs4487900	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	139303635	rs35168798	CT	C	169.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=1.706;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr9	139306467	rs10870144	C	T	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	139307194	rs3841202	T	TA	360.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	139313403	rs4604565	G	A	14377.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr9	139316601	rs10870165	C	T	12301.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,467:1.00:467
chr9	139324680	rs4451431	C	T	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	139324740	rs10870182	C	T	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	139326304	rs10870188	G	A	13408.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.571;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=1.244;SOR=0.504;set=HC	GT:AD:AF:DP	1/1:1,529:1.00:530
chr9	139327034	rs10870194	A	G	12597.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr9	139327439	rs10781542	A	G	13899.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,543:1.00:543
chr9	139328551	rs10870199	T	C	5957.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	139328722	rs7851507	G	T	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	139333049	rs5901103	GCCCT	G	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	139340351	rs36066734	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	139341529	rs3841203	CA	C	5808.73	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:12,299:0.96:311
chr9	139347778	rs11146030	A	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	139357279	rs10870067	G	A	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	139358059	rs11145753	G	A	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	139360354	rs3124590	A	G	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	139368681	rs45459100	G	A	6751.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	139371234	rs10781497	G	A	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	139371786	rs6560632	A	C	14023.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr9	139391636	rs2229974	G	A	12159.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr9	139399070	rs11574903	G	A	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	139410424	rs3125006	A	G	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	139410589	rs4880099	A	G	8003.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr9	139440845	rs3013306	G	A	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.38;SOR=2.701;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	139440852	rs3013307	A	G	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	139565150	rs4636297	A	G	14123.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr9	139565479	rs35614524	TGGG	T	293.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.37;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	139566823	rs1051828	A	G	7109.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	139569066	rs9411215	A	G	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	139572068	rs2236514	C	G	8874.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr9	139616742	rs945384	A	G	8814.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr9	139616840	rs3739939	G	A	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	139621168	rs2275160	G	A	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	139639532	rs145717467	CGGCCCACGCACCACACAGCTCCCAACGTGGGCCCCGAGT	C	9762.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr9	139642961	rs2811728	G	A	15767.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,613:1.00:613
chr9	139649580	rs879467	G	A	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr9	139650060	rs2784068	C	A	12452.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr9	139650167	.	G	GAACAGCATGGGGAACAGTGCAGGGAACCCTGCAGGGAACAGCATGGGGAACGGTGCAGGA	2911.73	.	AC=1;AF=0.500;AN=2;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;QD=22.06;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:129,3:0.02:132
chr9	139650595	rs35874639	T	G	22894.77	.	AC=2;AF=1.00;AN=2;DB;DP=1899;set=Intersection	GT:AD:AF:DP	1/1:608,713:0.54:1321
chr9	139650619	rs35341952	A	G	21774.77	.	AC=2;AF=1.00;AN=2;DB;DP=1861;set=Intersection	GT:AD:AF:DP	1/1:576,706:0.55:1282
chr9	139651163	rs57411373	A	AG	852.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	139652338	rs9411272	C	G	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	139656618	rs2484658	T	C	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	139685672	rs2784044	C	T	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	139685722	rs2784043	T	C	8987.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr9	139686289	rs2811788	A	G	7291.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr9	139686357	rs2784042	T	C	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	139686556	rs2784041	G	A	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	139686949	rs2784040	G	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	139690738	rs2784034	C	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	139697061	rs2784100	C	T	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr9	139699964	rs2811793	T	C	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	139700605	rs2811795	T	C	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr9	139701108	rs2254143	A	C	15923.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr9	139701983	rs3739944	C	G	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	139702908	rs7864908	C	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	139726239	rs2811748	A	G	10065.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr9	139730129	rs2811744	T	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	139731969	rs2811742	C	T	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	139732331	rs2811741	G	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	139732462	rs2811740	C	T	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	139744660	rs2811738	C	T	12371.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr9	139820048	rs17250673	G	A	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	139837700	.	A	AC	362.73	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr9	139837990	rs2271872	G	C	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	139840543	rs7850844	A	G	17933.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr9	139840859	rs908830	T	C	27584.77	.	AC=2;AF=1.00;AN=2;DB;DP=1070;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,1048:1.00:1048
chr9	139863732	rs908829	G	C	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	139864033	rs2386137	G	A	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	139864341	rs2386136	A	G	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	139866247	rs11790360	T	G	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	139872048	rs4880179	A	G	7490.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr9	139872291	rs71897337	AAGGAGGCTGGGTAGCCGCCCG	A	2170.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	139877698	rs968516	A	C	28787.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.432;ClippingRankSum=0.000;DB;DP=1159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=0.214;SOR=0.226;set=HC	GT:AD:AF:DP	1/1:1,1111:1.00:1112
chr9	139879067	rs2049042	T	C	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	139879170	rs17578859	G	A	16417.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:1,635:1.00:636
chr9	139902214	rs10870161	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	139902712	rs4880185	A	G	20462.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,789:1.00:789
chr9	139902786	rs4880186	G	C	19324.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,730:1.00:730
chr9	139902797	rs4880187	C	G	18409.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,706:1.00:706
chr9	139906513	rs2271863	T	C	10498.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr9	139906686	rs45540434	G	A	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	139907842	rs4880188	T	C	8106.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr9	139908139	rs10870162	A	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	139908265	rs10781531	T	C	7322.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr9	139910648	rs6560657	T	C	13695.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,525:1.00:525
chr9	139912178	rs879854	G	A	9469.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr9	139912484	rs908832	A	G	22927.77	.	AC=2;AF=1.00;AN=2;DB;DP=910;set=Intersection	GT:AD:AF:DP	1/1:3,894:1.00:897
chr9	139913239	rs908828	T	G	8817.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr9	139916471	rs142576618	A	ATGGCTCAGATGGGGGTG	6023.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=1.731;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	139923265	rs4880189	A	G	6618.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	139926402	rs7469569	T	C	29511.77	.	AC=2;AF=1.00;AN=2;DB;DP=1171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,1143:1.00:1143
chr9	139937795	rs10781535	T	C	19694.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr9	139937799	rs10781536	G	A	19394.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,427:1.00:427
chr9	139943549	rs7390981	G	A	12902.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr9	139944496	rs10870169	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=-0.000;DB;DP=184;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.31;ReadPosRankSum=1.159;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr9	139944509	rs10735661	T	C	3829.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.151;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=0.568;SOR=0.276;set=HC	GT:AD:AF:DP	1/1:1,149:0.99:150
chr9	139944548	.	T	C	548	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=2;MGOF=56;MMLQ=26;MQ=42.95;NF=5;NR=21;PP=548;QD=22.4142774057;SC=CCGCCTGCCCTTACCCACGAC;SbPval=0.97;Source=Platypus;TC=48;TCF=18;TCR=30;TR=26;WE=139944556;WS=139944538;set=Platypus	GT:AD:AF:DP	1/0:22,26:0.54:48
chr9	139945051	rs7869520	A	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	139946804	rs2271867	C	G	13415.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.123;QD=24.84;ReadPosRankSum=-1.222;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:2,538:1.00:540
chr9	139946905	rs34679600	C	CA	1952.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	139946916	rs11145979	G	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	139960178	rs2176674	A	G	15053.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr9	139960894	rs72763246	C	T	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	139972900	rs10870176	T	C	37763.77	.	AC=2;AF=1.00;AN=2;DB;DP=1441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,1411:1.00:1411
chr9	139973186	rs7390974	T	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	139973629	rs7390710	A	C	17544.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr9	139973652	rs7390711	A	G	15674.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr9	139975108	rs9314874	T	C	11105.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.222;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=0.032;SOR=0.433;set=HC	GT:AD:AF:DP	1/1:1,436:1.00:437
chr9	139977195	rs4390039	T	C	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	139981241	rs968732	GT	CG	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	139981627	rs968733	A	G	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	139982868	rs3750518	C	T	6518.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	139990530	rs7871579	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	139990906	rs4880199	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	139994102	rs4880200	G	A	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	139996193	.	CTG	C	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DP=416;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.376;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:322,43:0.12:365
chr9	139996641	rs13298199	C	A	34078.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.867;ClippingRankSum=0.000;DB;DP=1395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=25.106;QD=24.69;ReadPosRankSum=5.533;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:24,1356:0.98:1380
chr9	139996739	.	A	AGG	10327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.535;ClippingRankSum=0.000;DP=828;ExcessHet=3.0103;FS=35.494;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.739;QD=12.89;ReadPosRankSum=2.180;SOR=3.976;set=HC	GT:AD:AF:DP	0/1:463,338:0.42:801
chr9	139996749	rs11145991	G	A	8775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.096;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=1.374;QD=10.03;ReadPosRankSum=-6.690;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:625,250:0.29:875
chr9	139996764	rs62584544	G	C	3466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;ClippingRankSum=0.000;DB;DP=1031;ExcessHet=3.0103;FS=4.255;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-0.745;QD=3.49;ReadPosRankSum=-14.374;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:875,119:0.12:994
chr9	139996933	rs10118812	T	G	42819.77	.	AC=2;AF=1.00;AN=2;DB;DP=1691;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=26.13;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,1639:1.00:1639
chr9	140001341	rs5901117	G	GAAC	4652.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=44.31;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	140002220	rs10117795	A	G	8283.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr9	140002501	rs6420280	T	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	140002989	rs4880091	T	C	16984.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,671:1.00:671
chr9	140003427	rs4567	A	G	7834.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr9	140006202	rs13631	G	A	12186.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr9	140006425	rs10747048	C	G	22403.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,862:1.00:862
chr9	140008625	.	CCCCCGCCCGCGACCCCGCCCGGCACCCACGTGCCCCGCGA	C	6355.73	.	AC=2;AF=1.00;AN=2;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	140008750	rs10747049	G	C	12827.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.33;QD=31.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr9	140008899	rs10870183	G	A	4745.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.159;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.320;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.11;ReadPosRankSum=-1.014;SOR=0.466;set=HC	GT:AD:AF:DP	1/1:1,188:0.99:189
chr9	140009217	.	G	A	52.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	140040156	rs10870196	G	A	11768.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr9	140055876	rs10747050	G	A	11713.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,441:1.00:441
chr9	140080910	rs148147354	GCA	G	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.657;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr9	140108915	rs149701237	CTG	C	8564.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	140110274	rs7390663	T	C	9254.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr9	140120396	rs6606566	C	T	11047.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr9	140128085	rs28407527	T	C	16692.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:4,661:0.99:665
chr9	140130606	rs28542318	A	T	14395.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,563:1.00:563
chr9	140139757	rs9775264	G	A	8023.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr9	140142299	rs9330201	C	T	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	140147094	rs71387813	C	CCT	24110.73	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr9	140147152	rs28376526	C	G	18874.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,730:1.00:730
chr9	140148051	rs28631372	A	G	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	140157429	rs13294457	G	A	4894.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	140157460	rs13296455	T	C	7460.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,288:1.00:289
chr9	140157701	rs56368095	C	T	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	140158650	rs9695897	C	T	6786.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr9	140158871	rs13295537	T	C	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	140161334	rs9330192	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	140161631	.	TGTGGGGCTGAG	T	2990	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=3;HapScore=1;MMLQ=23;NF=4;NR=37;PP=2990;QD=20;SC=CAGGGGTCGGTGTGGGGCTGA;SbPval=0.71;Source=Platypus;TC=50;TCF=6;TCR=44;TR=41;WE=140161655;WS=140161621;set=Platypus	GT:AD:AF:DP	1/1:9,41:0.82:50
chr9	140161634	.	GGGGCT	G	6045.73	.	AC=2;AF=1.00;AN=2;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.85;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	140161641	.	AGGTGGG	A	6073.73	.	AC=2;AF=1.00;AN=2;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.04;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	140161647	.	G	A	1485	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=3;HapScore=1;MMLQ=27;NF=31;NR=37;SC=GCTGAGGTGGGGCTGAGGTGG;SbPval=0.52;Source=Platypus;TC=97;TCF=44;TCR=53;TR=68;WE=140161655;WS=140161621;set=Platypus	GT:AD:AF:DP	1/1:29,68:0.70:97
chr9	140161871	rs9802270	C	T	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	140161909	rs9802698	G	T	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	140167022	rs3204123	G	A	8003.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr9	140202194	rs13288421	T	C	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	140218025	.	C	T	1481	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=1;MGOF=26;MMLQ=24;MQ=60.02;NF=52;NR=20;PP=1481;QD=21.052377952;SC=GAGGGATGCTCTGCCGACACC;SbPval=0.46;Source=Platypus;TC=79;TCF=58;TCR=21;TR=72;WE=140218033;WS=140218015;set=Platypus	GT:AD:AF:DP	1/1:7,72:0.91:79
chr9	140218025	.	C	CTGCCGACACCTCACCCCGGACCACGAGGGATGCTT	3708.73	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=132.45;SOR=6.736;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	140243844	rs28545754	C	T	19795.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,753:1.00:753
chr9	140246050	rs11534416	T	G	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	140247143	rs7020732	T	G	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr9	140247365	rs28688712	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	140249253	rs11537108	AG	CA	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	140250633	rs13293922	G	A	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	140250818	rs7389423	C	T	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	140262218	rs11533157	T	C	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	140262426	rs11533158	C	T	7318.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	140268183	rs6606585	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	140320792	rs72765154	G	C	8892.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr9	140322404	rs28580293	C	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	140322640	rs28553346	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	140323251	rs11535664	C	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=24.37;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	140323906	rs9697151	G	C	4949.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	140328077	rs35138580	C	T	9577.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr9	140329265	rs28725243	G	C	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	140330976	rs13297080	T	C	5858.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	140331045	.	G	A	7937.77	.	AC=2;AF=1.00;AN=2;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	140331833	rs9414731	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	140332478	rs6606582	A	G	28026.77	.	AC=2;AF=1.00;AN=2;DB;DP=1124;set=Intersection	GT:AD:AF:DP	1/1:0,1118:1.00:1118
chr9	140344328	rs28699612	G	A	10979.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr9	140349874	rs28585539	C	G	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr9	140357848	rs2275781	G	C	9216.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr9	140357972	rs1891627	A	G	14317.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr9	140374861	rs1891630	A	G	9670.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr9	140459303	.	C	A	2298.77	.	AC=2;AF=1.00;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	140483076	rs2259657	G	A	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	140605355	rs4072654	A	C	7176.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	140637804	rs34385417	CT	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.069;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr9	140638461	rs1129768	T	C	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,237:1.00:238
chr9	140656980	rs4876941	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	140686373	rs10867072	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	140693181	rs4876947	G	A	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	140695576	rs7871917	A	G	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	140710603	rs4876902	C	T	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	140728787	rs10667884	T	TTC	29588.73	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr9	140777306	rs4422842	C	G	6106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.761;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=3.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=2.774;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:378,306:0.45:684
chr9	140777370	rs1110146	A	C	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:93,84:0.47:177
chr9	140786918	rs4076712	T	C	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	140846956	rs41277867	G	A	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	140881314	rs7034745	A	C	9384.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr9	140901146	rs2290580	A	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	140904640	rs7040050	G	A	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	140911670	rs7028989	C	T	9431.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr9	140911822	rs7042117	T	C	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	140917779	rs7873074	G	T	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	140918170	rs145816559	TGGAGAAGGAGACCAC	T	6624.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	140918300	rs6559259	G	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=25.55;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	140938183	rs3750506	A	G	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	140942057	rs1547504	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	140946701	rs140068697	C	CGTGTGTGCGTGTGT	2788.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.51;QD=37.18;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	140997349	rs35796437	AG	A	2142.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	141015019	rs2278971	G	C	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	141015351	rs2278972	A	G	12127.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr9	141015869	.	CTTTT	C,CTTT	1230.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.028;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=9.990;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.472;QD=13.67;ReadPosRankSum=1.807;SOR=0.060;set=HC	GT:AD:AF:DP	1/2:8,29,53:0.32,0.59:90
chr9	141016262	rs2278973	T	G	14373.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr9	141069844	rs62581042	T	C	3161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=3.258;MLEAC=1;MLEAF=0.500;MQ=54.89;MQRankSum=2.444;QD=10.33;ReadPosRankSum=-3.277;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:191,115:0.38:306
chr9	141069877	.	C	T	2741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=0.636;QD=4.95;ReadPosRankSum=-1.115;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:453,101:0.18:554
chr9	141069885	rs62581043	A	C	2743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=0.708;QD=4.52;ReadPosRankSum=0.413;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:500,107:0.18:607
chr9	141069897	.	T	TCAACGTGTACCACCACGAGGCCAGCGGTGAGACCCCCGTCCTTCCCCCACC	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DP=725;ExcessHet=3.0103;FS=10.584;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-2.113;QD=1.19;ReadPosRankSum=-1.744;SOR=2.811;set=HC	GT:AD:AF:DP	0/1:350,3:0.01:353
chr9	141069952	rs9410185	T	C	28513.73	.	AC=2;AF=1.00;AN=2;DB;DP=831;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.41;QD=35.07;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,813:1.00:813
chr9	141069977	.	G	GAGA	2011.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DP=689;ExcessHet=3.0103;FS=5.902;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=4.835;QD=3.94;ReadPosRankSum=-3.221;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:366,145:0.28:511
chr9	141069978	.	C	CCCCCGTCCTTCTCCCACCCAACGTGTACCACCACGAGGCCAGCGGTGA	3796.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DP=658;ExcessHet=3.0103;FS=4.875;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=4.857;QD=7.73;ReadPosRankSum=-10.258;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:364,127:0.26:491
chr9	141069993	rs200245769	C	T	2653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.061;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=2.970;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-2.614;QD=7.29;ReadPosRankSum=-2.204;SOR=1.930;set=HC	GT:AD:AF:DP	0/1:282,82:0.23:364
chr9	141070283	rs7868693	T	C	8931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.959;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.24;MQRankSum=-3.742;QD=18.57;ReadPosRankSum=0.735;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:74,407:0.85:481
chr9	141070335	rs7868705	T	G	8651.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr9	141071738	rs199786532	GC	G	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-7.843;QD=2.78;ReadPosRankSum=2.048;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:68,11:0.14:79
chr9	141071755	rs2507130	T	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-6.888;QD=4.46;ReadPosRankSum=-0.074;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr10	95226	rs6560829	A	T	17458.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr10	95229	rs6560830	C	T	17394.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr10	282897	rs4600135	C	T	2865.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.469;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.655;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.70;ReadPosRankSum=1.821;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:1,115:0.99:116
chr10	285200	rs7919436	T	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	285479	rs10655220	G	GTGTT	2040.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.85;QD=30.92;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	288184	rs34123561	G	GAA	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	292927	rs2303990	C	A	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	294165	rs10903752	T	C	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	294953	rs1017361	A	G	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	329182	rs66861796	TG	T	526.06	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr10	370977	rs3123241	A	G	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	387060	rs7904155	G	A	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	394714	rs4880610	G	A	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	395266	rs4880611	T	C	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	395463	rs4242754	G	A	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.264;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	410825	rs10795053	G	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	412449	rs1133113	A	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	428503	rs4881200	A	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	429903	rs11289740	GA	G	114.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.43;ReadPosRankSum=-0.489;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr10	429932	rs7092412	C	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	429977	rs10904083	G	A	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	435880	rs4881219	G	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	444997	rs6560836	C	T	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	445061	rs6560837	C	T	7153.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:1,278:1.00:279
chr10	459940	rs4881274	G	A	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	518547	rs10610683	ACT	A	7674.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	530644	rs1539231	G	A	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	687569	rs1631975	C	T	10090.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr10	696237	rs10904535	G	A	32307.77	.	AC=2;AF=1.00;AN=2;DB;DP=1261;set=Intersection	GT:AD:AF:DP	1/1:2,1221:1.00:1223
chr10	708192	rs3853289	A	G	7473.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	859270	rs3763722	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	1018585	rs4880745	T	G	13158.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr10	1038339	.	C	CA	40	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5001;HP=17;HapScore=2;MGOF=65;MMLQ=22;MQ=59.17;NF=2;NR=0;PP=40;QD=21.5;SC=GACTCTGTCTCAAAAAAAAAA;SbPval=0.12;Source=Platypus;TC=9;TCF=3;TCR=6;TR=2;WE=1038347;WS=1038336;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr10	1042023	rs10665098	A	AAAC	11701.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	1043058	rs1250887	T	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	1046480	.	CT	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=1.823;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.588;QD=1.05;ReadPosRankSum=-1.273;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:97,34:0.26:131
chr10	1046712	rs2306409	G	A	16259.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr10	1054276	rs10904595	T	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	1061625	.	GCTGAGCA	G	2576	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=2;HapScore=1;MGOF=27;MMLQ=24;MQ=59.3;NF=28;NR=18;PP=2576;QD=20;SC=GGTCCTGAGCGCTGAGCACTG;SbPval=0.57;Source=Platypus;TC=51;TCF=31;TCR=20;TR=46;WE=1061639;WS=1061615;set=Platypus	GT:AD:AF:DP	1/1:5,46:0.90:51
chr10	1081944	rs11396609	G	GT	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=7.442;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=5.477;QD=1.08;ReadPosRankSum=-0.455;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:361,90:0.20:451
chr10	1087551	rs12768746	T	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	1089616	rs11250238	T	C	11817.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr10	1093992	rs4880759	A	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	1142208	rs10794716	T	C	13602.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:2,550:1.00:552
chr10	1230968	rs2271275	C	T	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	1231038	.	C	G	839.77	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	1245893	rs1983028	A	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	1263076	rs3750677	C	T	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr10	1279598	rs67687625	G	A	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	1406228	rs11250463	T	C	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	1421516	rs10794748	A	G	8908.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	3124516	rs4881074	G	A	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	3143054	.	CAAAAA	C,CA	1868.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=37.37;ReadPosRankSum=0.729;SOR=1.143;set=HC	GT:AD:AF:DP	1/2:1,19,30:0.38,0.60:50
chr10	3143643	rs4881080	A	C	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	3145885	rs10903966	T	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	3145906	rs11251719	A	C	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	3147096	rs4424569	C	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.48;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	3147099	rs4469783	G	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.48;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	3147192	rs4256893	G	A	6093.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	3147456	rs4271292	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	3149402	rs10903967	A	G	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	3150973	rs1132173	C	T	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr10	3155173	rs7896691	C	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	3155217	rs6602023	T	C	3894.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.623;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=-0.148;SOR=0.687;set=HC	GT:AD:AF:DP	1/1:1,151:0.99:152
chr10	3155237	rs6602024	A	G	4473.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.45;ReadPosRankSum=1.177;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:2,181:0.99:183
chr10	3155263	rs7906901	T	C	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr10	3155408	rs3816700	C	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	3155428	rs3816701	C	T	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	3155540	rs4881085	A	G	8326.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr10	3155620	rs1052309	A	G	6134.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	3155753	rs4881087	G	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	3158848	rs7086902	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	3160917	rs3829913	T	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	3161131	rs3829914	C	T	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	3161216	rs3829916	A	G	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	3161236	rs17285851	C	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.72;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	3161269	rs3829917	G	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	3162033	rs6602025	T	C	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	3167463	rs2306309	T	C	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=43.78;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	3167465	rs3816703	A	G	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=46.12;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	3167527	rs142773253	ATTC	A	1517.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;QD=42.16;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	3171995	rs2279211	G	T	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	3172121	rs1052333	C	T	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	3172229	rs4598574	G	A	4574.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	3172267	rs4381274	A	G	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	3172299	rs4390256	T	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	3175541	rs3740613	C	A	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	3175600	rs72074210	ATAAG	A	1223.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	3178596	rs45590841	C	T	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	3178815	rs9063	G	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	3178905	rs7673	T	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	3178908	rs542	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	3179703	rs4881107	C	T	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	3179708	rs4881108	A	G	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	3180227	rs6901	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	3180316	rs11414	T	C	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	3180343	rs2388559	A	G	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	3181003	rs2279217	A	G	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	3181282	rs2279220	G	A	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	3183747	rs7094698	A	G	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	3185393	rs4881110	A	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	3185798	rs3736093	T	C	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	3186458	rs3752803	C	G	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	3186723	rs9423496	G	C	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	3187749	rs3758632	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	3187924	rs3758631	T	C	147.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	3189380	rs3740607	C	T	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	3190265	rs4881111	A	G	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	3190298	rs4881112	C	T	5453.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	3193557	rs60985673	TAAAAAAGAAACAA	T	1823.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	3197856	rs3765101	C	G	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	3199555	rs7086470	A	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	3200155	rs9423705	G	C	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	3200292	rs3182535	G	A	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	3201010	rs3814592	C	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.92;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	3201072	rs3814593	G	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	3201097	rs3814594	T	C	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	3202065	rs4242746	T	C	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	3202140	rs4242747	C	T	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	3205851	rs6602034	C	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	3206027	rs4609511	A	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	3208557	rs12359035	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=26.25;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	3208581	rs58131139	G	GA	357.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=23.85;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	3208583	.	A	AGAGGAATGGCACGCTAGGGAAGGC	381.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=23.86;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	3212425	rs17133560	T	G	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	3214369	rs4880599	A	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	3214516	rs4881118	A	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	3214995	rs34460808	AC	A	15559.73	.	AC=2;AF=1.00;AN=2;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=32.35;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr10	4867313	rs2961562	A	T	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	4868445	rs2924275	G	T	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	4879465	rs2961584	T	C	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	4884784	rs2924269	T	C	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	4884800	rs2961592	A	G	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	4887988	rs2924267	G	A	8166.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:1,315:1.00:316
chr10	4889525	rs2961597	T	C	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	5005549	rs7069696	G	C	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	5009364	rs2904802	T	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	5010367	rs12250190	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.60;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	5010390	rs200246244	A	G	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.05;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	5014545	rs67671072	T	TA	5003.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:8,219:0.96:227
chr10	5041398	rs56259037	T	C	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.08;MQRankSum=-0.849;QD=15.70;ReadPosRankSum=0.745;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr10	5042664	rs2275929	C	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	5045862	rs67165977	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.09;QD=31.16;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	5120157	rs4881396	G	T	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	5120227	rs11252921	C	T	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	5136651	rs12529	C	G	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	5139685	rs12387	G	A	6004.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	5139815	rs2245191	C	A	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	5147909	rs2275928	G	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	5149703	rs3209896	G	A	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	5196273	rs1781930	A	G	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	5197881	rs1781931	A	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	5199934	rs1781935	G	C	7657.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr10	5200059	rs1761601	T	C	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	5200638	rs1781937	G	A	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	5200739	rs5782810	T	TAGG	2808.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	5202060	rs1781940	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=23.32;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	5202104	rs2801889	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=23.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	5202221	rs41460145	G	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.36;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	5202241	rs1761599	C	T	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=1.963;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	5242004	rs55961423	C	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	5242037	rs55695566	C	T	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	5242164	rs17306779	A	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	5242346	rs7099651	G	A	8695.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:2,343:0.99:345
chr10	5246626	rs56015013	G	A	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	5255025	rs4880718	A	G	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	5258955	rs2050309	C	G	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	5260812	rs2398157	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	5435918	rs7097775	G	A	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	5436260	rs7910290	A	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	5436487	rs6601957	A	G	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	5437365	rs11253156	A	G	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	5446632	rs10904491	G	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	5446794	rs7477466	C	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr10	5446942	rs4881435	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	5446965	rs4881436	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	5471200	rs4604777	C	T	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	5495218	rs4567355	T	C	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	5498248	rs4242790	G	T	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	5558145	rs5782832	G	GC	7030.73	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=37.20;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	5558349	rs4072067	G	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	5567366	rs1142825	G	A	9073.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr10	5682641	rs7896492	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	5682855	rs4427479	T	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr10	5684342	rs6602421	C	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	5684534	rs61006671	T	TA	495.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.974;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;MQRankSum=0.000;QD=13.77;ReadPosRankSum=0.176;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:4,32:0.89:36
chr10	5684553	rs12268809	A	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	5684616	rs56802263	G	GT	241.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.59;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	5693379	rs6602483	A	G	5643.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	5708360	rs75474563	G	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	5708420	rs6602613	T	C	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	5708420	.	TCA	CCT	908	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=3;HapScore=2;MGOF=53;MMLQ=17;MQ=60.0;NF=15;NR=15;PP=908;QD=32.0489291621;SC=GCGGCCGGCCTCAGGAGCCGG;SbPval=0.51;Source=Platypus;TC=31;TCF=16;TCR=15;TR=30;WE=5708442;WS=5708410;set=Platypus	GT:AD:AF:DP	1/1:1,30:0.97:31
chr10	5708422	rs76394459	A	T	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	5708434	rs56178329	C	G	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	5766337	rs10737018	G	A	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	5781628	rs2254067	T	G	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	5781969	rs2797486	A	T	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	5784509	rs2797488	G	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	5788608	rs2797491	G	C	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	5790420	rs2669142	T	C	6843.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.390;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.393;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=-1.052;SOR=0.513;set=HC	GT:AD:AF:DP	1/1:1,272:1.00:273
chr10	5804531	rs2797501	G	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	5837038	rs10752110	T	C	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	5904661	rs61832916	A	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	5944882	rs74646141	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	5990899	rs4367845	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	5995052	rs2229135	C	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.98;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	5998285	rs3136627	G	A	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	6000186	rs151206362	TGGAAACAAACATGGTACAGAAAA	T	2581.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	6000409	rs12260233	T	C	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	6001696	rs3136618	C	T	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	6002368	rs2228059	T	G	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	6005674	rs3136614	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	6008172	rs2296139	C	T	4981.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr10	6041854	rs41294645	C	T	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	6054765	rs12722600	C	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	6061277	rs7069976	G	A	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	6061781	rs10752175	T	C	6562.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr10	6062051	rs9804284	T	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	6063674	rs942200	T	C	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	6131225	rs186705110	A	G	143.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	6152220	rs41295353	C	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	6156118	rs10795823	T	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	6258015	rs2148293	T	C	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	6258052	rs2148294	G	A	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	6258300	rs2516622	A	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	6258311	rs2516623	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	6258796	rs2182412	T	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr10	6258840	rs5782881	GC	G	1012.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	6258937	rs2765827	A	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	6259239	rs2516624	G	A	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	6261704	rs1557111	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	6266956	rs4747951	G	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	6368707	rs7087657	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	6368721	rs7074209	G	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.84;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	6368724	rs7074211	G	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	6368760	.	C	T	46	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=2;MGOF=60;MMLQ=27;MQ=59.07;NF=1;NR=3;PP=46;QD=20.1928031368;SC=TTCGGGCACTCAGGACTTGTT;SbPval=0.68;Source=Platypus;TC=4;TCF=1;TCR=3;TR=4;WE=6368768;WS=6368750;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	6392848	rs744254	G	A	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	6472891	rs11258747	G	T	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr10	6472962	rs601150	T	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	6498723	rs11258943	G	A	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	6506472	rs41301101	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.03;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	6506481	rs35896644	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	6520981	rs17301189	C	T	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,179:0.99:180
chr10	6531552	rs4750528	A	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	6533877	rs3815975	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	6533900	rs3815974	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	6552852	rs563798	C	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	7205717	rs2692756	C	G	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	7230524	rs2462712	G	T	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	7230824	rs2762607	A	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	7239386	rs2762604	C	T	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	7285632	rs2248474	A	G	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	7318724	rs7075434	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	7318803	rs7097601	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	7319078	rs4338435	C	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	7319088	rs4611096	A	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	7390147	rs1749362	T	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	7390214	rs1749361	G	A	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	7390300	rs1751658	A	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	7423960	rs2254756	T	C	112.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	7605067	rs3824658	C	T	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	7605077	rs61199416	TC	T	4521.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	7605101	rs10795551	A	G	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	7605457	rs10737022	G	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	7614918	rs11255194	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	7614936	rs10737023	T	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	7618380	rs3818783	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	7618501	rs2275068	A	G	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	7618686	rs2275069	T	G	8451.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr10	7618993	rs10458802	G	A	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	7618997	rs10458803	G	A	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	7622047	rs12256183	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	7622075	rs12262854	G	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	7627788	.	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.734;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-0.621;QD=1.84;ReadPosRankSum=0.445;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr10	7627805	.	C	CA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.399;QD=0.87;ReadPosRankSum=1.409;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr10	7629168	rs945149	C	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	7683873	rs41382649	A	T	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	7697504	rs11255267	G	A	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	7755088	.	GA	G	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.784;QD=0.91;ReadPosRankSum=0.226;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:83,25:0.23:108
chr10	7763661	rs7075296	A	G	9579.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr10	7776831	rs1926937	C	T	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	7785017	rs3736965	T	C	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	7788495	rs7912419	T	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	7795911	rs7342066	A	G	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	7804308	rs1980856	C	T	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	7811407	rs2296734	G	C	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	7829759	rs17553878	C	T	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr10	7830319	rs1475406	G	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	7841225	rs112785663	T	C	43.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	7846152	rs914609	T	C	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	7866268	rs7070208	C	G	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	8006798	rs4747647	A	G	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	8007559	rs10795583	GT	CC	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=44.58;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	8017033	rs149768737	CA	C	108.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.319;QD=3.40;ReadPosRankSum=0.581;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr10	8055647	rs369220057	T	A	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	8093034	rs501764	G	T	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	8093185	rs485411	T	C	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr10	8106231	rs59622436	GT	G	39	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	8111409	rs422628	C	T	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	8115668	rs373223232	TA	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=3.710;QD=0.55;ReadPosRankSum=0.662;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr10	9449465	rs61843465	A	G	19230.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.91;MQRankSum=-0.296;QD=39.57;ReadPosRankSum=0.499;SOR=0.238;set=HC	GT:AD:AF:DP	1/1:1,485:1.00:486
chr10	9449482	.	C	CACACAGAGCGCCCCAGCGGGGTCCTAGACACAGAGCGCCTCAGCGGGATCCTACACACAGAGCGCCTCAGCGGGGTCCTAG	25482.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DP=594;ExcessHet=3.0103;FS=3.162;MLEAC=2;MLEAF=1.000;MQ=58.25;MQRankSum=-0.458;QD=55.64;ReadPosRankSum=-0.282;SOR=0.344;set=HC	GT:AD:AF:DP	1/1:1,457:1.00:458
chr10	9449607	.	C	CG	2304.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=2.318;QD=34.91;ReadPosRankSum=-0.970;SOR=1.767;set=HC	GT:AD:AF:DP	0/1:5,61:0.92:66
chr10	9449615	rs377332692	A	G	2172.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.112;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.900;MLEAC=2;MLEAF=1.000;MQ=56.08;MQRankSum=0.365;QD=42.60;ReadPosRankSum=-2.867;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:3,48:0.94:51
chr10	9449617	rs370924513	A	T	1958.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.777;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.753;MLEAC=2;MLEAF=1.000;MQ=55.92;MQRankSum=0.325;QD=39.98;ReadPosRankSum=-2.862;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:3,46:0.94:49
chr10	9449620	rs111226405	C	G	1762.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.360;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.401;MLEAC=2;MLEAF=1.000;MQ=55.68;MQRankSum=0.276;QD=40.06;ReadPosRankSum=-2.847;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:3,41:0.93:44
chr10	9449626	rs76028402	C	G	1474.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.474;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.206;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=0.170;QD=42.14;ReadPosRankSum=-2.811;SOR=2.770;set=HC	GT:AD:AF:DP	0/1:3,32:0.91:35
chr10	9449628	.	A	C	1365.77	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.05;QD=41.39;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:3,30:0.91:33
chr10	9449633	rs111900079	T	C	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.798;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.750;MLEAC=1;MLEAF=0.500;MQ=53.87;MQRankSum=-0.136;QD=38.83;ReadPosRankSum=-2.748;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,22:0.88:25
chr10	9449637	rs78515525	T	G	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.52;MQRankSum=-0.414;QD=58.35;ReadPosRankSum=-2.369;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr10	11047207	rs2773499	C	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.99;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	11047218	.	GGA	G	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=6.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=1.591;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr10	11290997	rs2653522	A	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	11299735	rs2277212	A	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	11316813	rs67013685	TAGTG	T	335.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	11316909	rs2244576	G	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	11330548	rs2277215	G	A	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr10	11330576	rs2277216	C	T	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	11356093	rs5783207	T	TTTTG	1929.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	11356160	rs2246449	C	T	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	11360673	rs2279809	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	11362789	rs35548374	GT	G	1542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=8.087;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.613;QD=8.48;ReadPosRankSum=1.900;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:40,142:0.78:182
chr10	11367780	rs3832668	CT	C	3041.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:2,148:0.99:150
chr10	11532758	rs882206	C	A	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	11789290	rs4750089	G	C	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	11789382	rs4750090	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	11789405	rs4750091	G	A	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	11789511	rs4750092	C	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	11791741	rs58243400	CCCAGCAAT	C	775.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=43.10;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	11797322	.	CAA	C,CA	659.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.86;MQRankSum=0.000;QD=10.00;ReadPosRankSum=1.440;SOR=0.846;set=HC	GT:AD:AF:DP	1/2:12,22,32:0.33,0.48:66
chr10	11797436	rs7899215	T	C	18506.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,704:1.00:704
chr10	11797467	rs7910140	G	A	15396.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,587:1.00:587
chr10	11797619	rs902892	C	G	5287.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	11797675	rs3750695	G	A	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	11978499	rs7921794	T	G	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	12046455	rs9943399	T	A	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	12068645	.	C	CT	124.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.734;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr10	12071397	rs11257490	G	A	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	12111090	rs1279138	T	C	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	12123363	rs1722446	T	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	12123667	rs1722445	A	C	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	12140048	rs142073182	G	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	12142284	.	C	CTGTTTTTTTTTTT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=4.867;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=0.873;QD=4.45;ReadPosRankSum=2.208;SOR=1.930;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr10	12148259	rs1701472	A	C	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	12148286	rs1615510	T	C	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	12149939	rs1722462	C	T	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	12159647	rs2399771	A	G	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	12159844	.	GATCTCCCCTCTCCT	G	65	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9999;HP=2;HapScore=3;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=65;QD=36.0;SC=AGGTGATGCAGATCTCCCCTC;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=3;WE=12159870;WS=12159834;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr10	12159845	rs34396265	ATCTCCCCTCTCC	A	458.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.70;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	12159859	rs376672314	ATT	A	459.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.79;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	12159861	.	T	A	46	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9999;HP=4;HapScore=3;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=2;PP=46;QD=26.9237375157;SC=CCTCTCCTATTTTTATTTATT;SbPval=0.5;Source=Platypus;TC=6;TCF=3;TCR=3;TR=3;WE=12159870;WS=12159834;set=Platypus	GT:AD:AF:DP	1/1:3,3:0.50:6
chr10	12160602	rs11257543	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.70;QD=41.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	12160606	rs11257544	T	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.41;QD=41.34;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	12160623	rs11257545	C	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	12191933	rs10466280	C	T	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	12195881	rs2895501	G	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	12198019	rs3758376	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	12200125	rs4750175	C	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	12202866	rs10906092	A	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	12203197	rs2399784	C	G	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	12209752	rs6686	T	C	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	12209936	rs71513318	GT	G	992.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	12215870	rs35088067	CT	C	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=1.541;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr10	12226870	.	G	GA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.696;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr10	12227067	rs2140660	C	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	12228459	rs11257584	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	12240691	.	G	GT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.033;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr10	12252217	rs2271804	G	A	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	12288302	rs36042706	A	G	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	12292286	rs12779647	C	G	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	12292344	rs10951	A	G	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	12292454	rs1051055	A	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	12595037	rs2815629	G	C	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	12595147	rs2895524	C	T	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	12833003	rs10717134	TA	T	1324.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr10	12856057	rs10795984	G	A	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	12866356	rs2482023	A	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	12867598	rs1757051	C	G	6435.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr10	12870642	rs55888132	G	GA	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.14;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	12870659	rs140735308	G	GCC	921.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.87;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	12870714	rs2482075	A	G	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	12940377	rs10752280	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	12940455	rs10906249	A	G	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	13158262	rs2244380	C	T	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	13164332	rs765884	T	C	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	13164596	rs489040	A	G	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	13166076	rs523747	A	G	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	13167860	rs676302	G	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	13206233	rs7090944	A	T	8221.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	13212848	rs75610705	A	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	13212884	rs2147279	C	T	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	13214427	rs17152897	A	G	14450.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr10	13214812	rs6602637	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	13230837	rs6602641	A	G	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	13230950	rs2296222	C	T	8617.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:1,334:1.00:335
chr10	13231194	rs2296221	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	13237015	rs10796036	G	A	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	13239917	rs35803060	AT	A	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.791;QD=7.12;ReadPosRankSum=0.076;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr10	13271513	rs112352250	GA	G	1748.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:16,118:0.88:134
chr10	13275437	rs41291315	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	13275510	rs7893239	C	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.81;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	13275514	rs4750327	A	G	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.19;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	13275553	rs3829925	T	G	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=1.172;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	13275643	rs4750328	G	A	12300.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:4,482:0.99:486
chr10	13275676	rs3829926	T	C	13704.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:2,538:1.00:540
chr10	13275910	.	G	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=30.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=3.257;SOR=5.419;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr10	13276013	rs145048266	G	GT,GTT	3425.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/1:1.00:83
chr10	13276019	.	TA	T	483	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=5;HapScore=2;MGOF=19;MMLQ=27;MQ=60.36;NF=21;NR=21;PP=483;QD=11.8571428571;SC=TACTGTTTTTTATTATTATTA;SbPval=0.34;Source=Platypus;TC=48;TCF=21;TCR=27;TR=42;WE=13276028;WS=13276003;set=Platypus	GT:AD:AF:DP	1/1:6,42:0.88:48
chr10	13276020	rs117607981	A	T	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=42.16;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	13276179	rs942418	A	G	7269.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	13320411	rs825625	A	T	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	13334058	rs1408364	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	13337319	rs654536	A	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	13337330	rs654553	T	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	13337588	rs1747682	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	13340293	rs7916926	A	G	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	13340339	rs10796054	G	A	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	13341836	rs511959	G	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	13341900	rs512109	A	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	13361421	rs10906347	C	T	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	13364143	rs149378948	CT	C	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.572;QD=7.95;ReadPosRankSum=1.813;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:14,29:0.67:43
chr10	13370315	rs3740211	C	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	13375906	rs10752297	T	C	7081.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr10	13378445	rs2275128	A	G	13217.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr10	13481427	rs12415754	T	A	14507.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr10	13494396	rs3832669	TAA	T	588.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	13494594	rs2277222	T	C	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	13538928	rs59561773	C	CA,CAA	1677.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.761;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.000;QD=15.11;ReadPosRankSum=-0.534;SOR=0.380;set=HC	GT:AD:AF:DP	1/2:20,34,57:0.31,0.51:111
chr10	13570569	.	GGCGGCAGCGGCGGCA	G	3612.73	.	AC=2;AF=1.00;AN=2;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;QD=43.53;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	13570673	rs10906401	A	G	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.28;QD=25.80;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	13633835	rs10906419	A	G	10020.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr10	13633928	.	GT	G	159.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=2.393;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:186,52:0.22:238
chr10	13633929	rs10796097	T	G	1605.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=3.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-1.333;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:98,137:0.58:235
chr10	13633930	.	T	G	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.471;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=3.053;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:191,47:0.20:238
chr10	13647579	rs34754785	C	CA	100	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.00;ReadPosRankSum=1.282;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,8:0.80:10
chr10	13653490	rs2478121	C	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	13658335	rs2253308	G	A	5913.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr10	13693883	rs11258499	C	T	11733.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:1,458:1.00:459
chr10	13702668	rs10796105	T	C	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	13705298	rs10796108	G	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	13705307	rs55876188	ACT	A	1240.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	13735603	rs943090	G	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	13743646	rs1541005	G	C	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	13749228	rs11258541	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	13782110	rs11258567	A	C	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	13782124	rs10906462	A	G	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	13782605	rs6602679	G	A	9208.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr10	13838604	rs3740121	A	G	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr10	14050161	.	C	CTGTG	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.783;QD=22.91;ReadPosRankSum=-0.223;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr10	14372306	rs35432616	G	GA	691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.678;QD=11.34;ReadPosRankSum=0.843;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:14,47:0.77:61
chr10	14425204	rs12780876	T	A	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	14595392	rs11259179	A	G	723.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.23;ReadPosRankSum=2.079;SOR=0.436;set=HC	GT:AD:AF:DP	1/1:3,39:0.93:42
chr10	14968656	.	CAA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.72;ReadPosRankSum=-0.272;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr10	14976414	rs7076862	G	A	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	15177191	.	TTTG	T	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-2.562;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr10	15256194	rs3814165	G	A	4819.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr10	15263100	rs6602828	C	T	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	15296572	rs3824620	A	T	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	15317834	rs45612734	GA	G	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	15573050	rs1041135	A	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	15573205	rs9333240	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	15590372	rs9333229	G	T	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	15600271	rs2277204	A	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	15600282	.	A	AT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-1.365;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr10	15648104	rs2282384	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	15648243	rs2282383	C	T	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	15650401	rs3041592	TAC	T	333.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;QD=27.81;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	15685983	rs4748191	A	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	15713507	rs7100228	A	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	15713541	rs6602051	T	C	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	15713667	rs7100510	C	G	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	15729923	rs1954181	C	T	8268.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:2,323:0.99:325
chr10	15760670	rs2298031	C	G	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	15761770	rs11575600	TCTCC	T	2009.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	15902303	rs2297882	A	G	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	16526840	rs2275731	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	16547058	rs7904014	A	G	6519.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr10	16556710	rs7909832	T	C	11251.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr10	16562600	rs72772306	G	A	16464.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.22;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,628:1.00:628
chr10	16736977	rs3740173	T	C	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	16737165	rs72451149	G	GA	1255.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:17,77:0.82:94
chr10	16737166	rs3837313	G	A	2951.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.222;QD=30.12;ReadPosRankSum=-0.729;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:3,95:0.97:98
chr10	16737289	rs3740172	A	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	16911605	rs703075	C	A	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	16918997	rs1801240	T	C	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr10	16919052	rs1801239	T	C	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	16943371	rs2796835	G	C	6932.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	16948177	rs780807	A	G	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	16967401	rs1276712	C	T	6152.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	16967445	rs1276713	T	G	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	16967586	rs62619939	C	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	16975078	rs2271461	G	A	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	17024503	rs1801231	G	A	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	17024615	rs1801229	A	T	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	17026010	rs2291523	A	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	17026384	rs3012494	A	G	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	17032281	rs2291521	C	T	7646.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr10	17032559	rs925522	A	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.24;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	17032559	.	ACA	CCG	830	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=0;NR=15;PP=830;QD=58.8978583241;SC=GGGCAACAGCACATGGAAAAT;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=15;WE=17032569;WS=17032549;set=Platypus	GT:AD:AF:DP	1/1:2,15:0.88:17
chr10	17032561	rs925523	A	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.93;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	17062148	rs35013380	A	G	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	17065357	rs11254331	G	A	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	17065378	rs137856627	GA	G	728.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.691;QD=11.04;ReadPosRankSum=0.220;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:10,56:0.85:66
chr10	17110474	rs4747297	C	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	17110595	rs10795440	G	A	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	17113456	rs138083522	C	T	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	17113563	rs1801225	C	T	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	17141952	rs1033765	C	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	17146667	rs4748353	C	T	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	17147521	rs1801224	G	T	8740.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	17156151	rs1801222	A	G	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	17157630	rs2295813	C	T	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	17164760	rs11409967	A	AC	960.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	17171265	rs2281648	G	C	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	17193907	.	C	T	2365.77	.	AC=2;AF=1.00;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	17199419	rs2295810	C	G	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	17199830	rs7894268	A	C	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	17203356	rs3752950	G	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	17204139	rs33993216	G	A	6672.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	17204187	rs11254413	G	A	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr10	17211383	rs7084476	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	17216419	rs2273735	T	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	17216556	rs2273734	C	T	8627.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr10	17243406	rs1885395	C	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	17243443	rs11271712	G	GCCGCCCCACAGTGT	4505.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.100;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.86;ReadPosRankSum=-1.250;SOR=1.461;set=HC	GT:AD:AF:DP	1/1:4,142:0.97:146
chr10	17243480	rs1885394	T	A	12114.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.83;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,469:1.00:469
chr10	17272903	rs5783538	AT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.45;ReadPosRankSum=-1.157;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr10	17278171	rs165531	C	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	17279211	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=2.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.438;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr10	17365228	.	G	GCA	23	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.4998;HP=2;HapScore=2;MGOF=1;MMLQ=15;MQ=59.08;NF=0;NR=1;PP=23;QD=29.0;SC=ACATATGCGCGCACACACACA;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=1;WE=17365236;WS=17365218;set=Platypus	GT:AD:AF:DP	1/0:6,1:0.14:7
chr10	17495709	rs45551937	G	C	6067.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	17636182	rs2272144	G	C	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	17636309	rs1053926	G	A	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	17645814	rs2252808	C	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	17646048	.	T	TA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.444;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr10	17659131	rs11254692	C	A	7675.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.16;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	17659149	rs7895850	C	T	6596.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	17738763	rs41289337	G	A	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	18242304	rs691112	T	C	8437.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr10	18266989	rs2478568	G	A	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:1,177:0.99:178
chr10	18276682	rs10508555	G	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	18280054	rs58262664	C	CTTT	560.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=1.206;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr10	18550887	rs12261375	T	C	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	18551154	rs10764369	G	A	141.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	18789724	rs4485000	T	G	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	18825192	.	TTTTTTTTTTTGG	T	77.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=9.302;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.351;QD=1.69;ReadPosRankSum=0.376;SOR=2.120;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr10	18825193	rs376046981	TTTTTTTTTTGG	T	44.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=-0.608;QD=1.04;ReadPosRankSum=1.986;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr10	18828635	rs58225473	T	G	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	18828663	rs4747352	G	T	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=40.00;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	18828669	rs67831174	GT	G	89.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.334;QD=1.50;ReadPosRankSum=0.896;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr10	18828670	rs58830289	T	C	414.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-1.019;QD=7.28;ReadPosRankSum=0.064;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:27,30:0.53:57
chr10	18828671	.	T	C	95.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.164;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.564;QD=1.60;ReadPosRankSum=1.857;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr10	18834797	rs58257898	T	TAAAAA	130	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=65.00;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	18836957	rs4747353	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	18840919	rs12767546	T	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	18884992	rs78634075	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	18903281	rs11405681	C	CA	353.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=0.152;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr10	18940185	rs140572895	G	GT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.548;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:74,17:0.19:91
chr10	19355918	rs72787427	A	G	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	19376734	rs112293611	G	GT	2133.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.409;QD=19.40;ReadPosRankSum=1.673;SOR=0.346;set=HC	GT:AD:AF:DP	1/1:6,104:0.95:110
chr10	19392857	rs10159517	T	C	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	19492702	rs16918344	C	T	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr10	19492832	rs7476259	A	C	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	19493117	rs72786543	T	C	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	19493215	rs202203955	T	TG	1268.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:3,63:0.95:66
chr10	19493309	rs10508578	G	A	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=24.96;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	19493993	rs4601653	G	C	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	19494310	rs7090927	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	19498278	rs2358355	G	A	7475.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr10	19498722	rs2245136	A	G	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	19546796	rs10763903	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr10	19571941	rs2499066	A	G	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.50;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	19620285	.	CT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.120;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chr10	19739459	rs6415957	T	G	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	19778072	rs2184035	A	G	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	19780543	rs10827499	C	T	9945.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr10	19884264	rs10827628	G	A	6115.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	19896830	rs7909976	C	A	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	19904870	rs10580913	ATT	A	1830.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	19904879	rs62881061	T	G	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	20019762	rs144880931	AAC	A	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.704;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr10	20105936	rs989767	T	C	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	20105996	rs63234960	TGGC	T	7634.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	20336112	rs10740961	G	T	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	20357267	rs75861169	A	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	20436697	rs41277354	T	C	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	20506326	rs12783379	T	C	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	20506418	rs3817405	G	A	12333.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr10	20534333	rs2778979	A	G	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	20568524	rs2681949	T	C	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	21076307	rs2296607	C	T	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr10	21098879	rs200571909	G	GAA	133.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.04;ReadPosRankSum=-0.000;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr10	21104694	rs4748727	A	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	21108247	rs1006362	C	T	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=25.34;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	21112111	rs11012353	A	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	21115332	rs1409348	T	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	21120116	rs10491056	A	G	11239.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr10	21141440	rs3831100	AG	A	956.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	21141469	rs703089	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	21157763	rs5783755	CA	C	74.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	21176945	rs703100	G	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	21185821	rs788971	A	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	21188197	rs788976	T	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	21414892	rs625223	C	G	8772.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr10	21435340	rs72102767	ACACT	A	16581.73	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.75;QD=43.98;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr10	21461410	rs11413698	G	GA	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.032;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:143,40:0.22:183
chr10	21901255	rs369797804	CT	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.812;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr10	22193422	rs792455	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	22208630	rs2807978	T	C	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	22498749	rs2478476	A	T	10097.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr10	22635359	.	G	GTTCTTC	404.73	.	AC=2;AF=1.00;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	22826093	rs1053454	A	C	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	22828833	.	AGAGAGAGG	A	232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.479;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr10	22828835	rs146089705	AGAGAGG	A	360.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.262;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr10	22830719	rs943192	G	C	10469.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr10	22839463	rs10047326	C	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	22896779	rs2765997	C	T	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	23297301	rs11817610	C	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	23297336	rs11819616	A	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	23303253	rs1054052	T	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	23393226	rs1555805	C	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	23408139	rs2296468	A	G	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	24498289	.	GA	G	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-1.460;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr10	24544276	rs67303587	GCTGA	G	1142.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	24564831	rs10764458	C	T	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	24669747	rs41277412	C	T	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	24722205	rs2274830	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	24784014	rs11341951	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=0.68;ReadPosRankSum=2.665;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:75,27:0.26:102
chr10	24790393	rs1112284	A	G	7401.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr10	24790491	rs2366916	GC	TT	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	24810663	rs2297330	C	A	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	24832885	rs3748218	C	T	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	24878129	rs7478260	G	A	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	24879281	rs10734053	A	G	7991.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr10	25231171	rs3748223	A	G	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	25273311	rs5783912	G	GA	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=4.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.260;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:47,29:0.38:76
chr10	25701341	rs2480345	C	G	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	25877859	rs144466352	TAAAC	T	892.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=42.51;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	25888180	rs10828833	A	G	2241.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.861;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.88;ReadPosRankSum=-0.282;SOR=0.249;set=HC	GT:AD:AF:DP	1/1:1,97:0.99:98
chr10	26240944	rs17450092	C	T	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	26241025	rs11014875	T	A	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	26244089	rs1546700	T	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.62;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	26244096	rs1546699	G	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	26285287	rs41279906	A	C	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	26286066	rs139987960	TTA	T	983.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	26286159	rs12257119	G	T	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	26355771	rs3824703	C	A	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	26355862	rs3824702	G	T	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.89;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	26355872	rs3824701	A	G	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	26355906	rs3824700	G	A	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	26355992	rs3824699	A	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,126:0.98:128
chr10	26356014	rs3824698	CA	TG	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	26356037	rs3824696	C	T	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	26356066	rs3824695	C	T	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	26357625	rs3817421	T	C	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	26357747	rs35379457	CG	TA	15487.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	26357820	rs3817419	C	T	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	26359180	rs3758441	T	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=24.63;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	26359200	rs3834403	T	TA	1616.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=30.50;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	26385578	rs41279908	G	A	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	26436298	rs35241240	TGAG	T	2792.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	26443646	rs3818956	G	A	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	26446312	rs3758449	G	A	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	26457637	rs16926628	T	C	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	26465792	rs17739680	T	C	5855.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	26512638	.	ATGTG	A	57	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=57;QD=32.0;SC=GTGTATGTGCATGTGTGTGTG;SbPval=0.71;Source=Platypus;TC=11;TCF=6;TCR=5;TR=2;WE=26512649;WS=26512628;set=Platypus	GT:AD:AF:DP	0/1:9,2:0.18:11
chr10	26993725	rs1677730	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	26993737	rs1780193	A	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	26994150	rs1780192	A	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	27318371	rs1963735	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	27326999	rs7096505	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	27368126	rs3737055	A	C	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	27371623	rs10829173	G	A	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	27371647	rs10829174	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	27375377	rs10443987	A	T	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	27382240	rs2297147	T	C	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	27389197	rs7897309	T	C	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	27400861	rs9833	G	A	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	27405310	rs2480718	C	G	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	27405331	rs7901976	C	T	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	27409555	rs10829190	G	A	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	27436295	rs3780926	A	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	27444303	rs3824593	G	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	27444328	rs7919803	CT	AC	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	27444344	rs7907988	T	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	27454111	rs7068375	A	T	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr10	27456003	rs788238	G	A	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	27459670	rs1981296	C	T	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr10	27461953	rs6482600	T	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	27469765	.	C	T	831.77	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	27475444	rs10741130	T	C	7922.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	27475494	rs10764686	T	C	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	27497074	rs7919523	C	T	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	27506854	rs1775355	C	T	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	27508758	rs10764690	T	C	8603.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr10	27508837	rs788213	T	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	27529549	rs2797078	C	A	21460.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;ClippingRankSum=0.000;DB;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.085;QD=25.37;ReadPosRankSum=1.209;SOR=0.241;set=HC	GT:AD:AF:DP	1/1:4,842:1.00:846
chr10	27529565	rs2489372	T	C	26501.77	.	AC=2;AF=1.00;AN=2;DB;DP=1032;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.75;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,1029:1.00:1029
chr10	27539507	rs7896532	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	27577568	rs2780686	G	A	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	27577615	rs11015640	T	G	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	27577640	rs3818746	G	T	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	27595356	rs7085523	C	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	27623140	rs7088108	T	C	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	27687225	rs2505323	A	G	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	27687775	rs1638630	T	C	8076.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr10	27687965	rs2505327	A	G	8504.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr10	27687994	rs2484173	A	G	9970.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr10	27688109	rs2429485	T	C	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr10	27688188	rs368432311	AG	A	70.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-1.115;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr10	27688189	rs2484174	G	A	256.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=1.517;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr10	27692307	rs11599425	A	G	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	27700887	rs2429499	G	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	27702042	.	T	TA	6575.73	.	AC=2;AF=1.00;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	27702726	rs11015753	G	A	11711.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr10	27703234	rs7071851	A	G	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	28032136	rs2252651	C	T	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	28149810	rs77530863	T	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	28225897	rs2297646	G	T	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	28228865	rs7893462	A	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	28233120	rs3824590	A	C	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	28233732	rs41283706	C	G	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	28233931	rs34717952	G	A	11366.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr10	28233931	.	GCA	ACG	2187	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=48;NR=76;PP=2187;QD=18.0682893134;SC=AAGGAACACCGCATTCCCATA;SbPval=0.54;Source=Platypus;TC=128;TCF=50;TCR=78;TR=124;WE=28233941;WS=28233921;set=Platypus	GT:AD:AF:DP	1/1:4,124:0.97:128
chr10	28233933	rs34084011	A	G	11366.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	28250610	rs147175768	C	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=-5.248;QD=0.28;ReadPosRankSum=2.349;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:131,22:0.14:153
chr10	28358548	rs2763318	CA	AC	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	28378758	rs2997211	T	C	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	28491313	rs11598304	C	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	28822373	rs12767429	A	C	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	28823126	rs35136724	G	A	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	28879838	rs41283724	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	28903400	rs71391055	G	GTCTTCTTTAAAACA	1204.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	29136129	rs813935	A	G	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr10	29137085	rs787323	C	T	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	29162324	rs35236571	TAC	T	617.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.34;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	29577924	rs2768670	G	C	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	29578084	rs17851935	A	G	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.24;QD=25.84;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	29578180	.	A	ATGAAGCCAACTGTCTC	1324.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.12;QD=88.32;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	29578351	rs2768693	T	C	196.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-1.028;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr10	29580735	rs2148901	C	T	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.72;QD=44.14;SOR=1.888;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	29580743	rs2148902	G	A	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.98;QD=43.53;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	29581493	rs3818551	A	C	19021.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.056;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.99;MQRankSum=2.468;QD=25.26;ReadPosRankSum=1.553;SOR=0.245;set=HC	GT:AD:AF:DP	1/1:1,752:1.00:753
chr10	29598896	rs2796293	A	G	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	29779847	rs199726033	A	C	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-10.153;QD=3.67;ReadPosRankSum=-0.292;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:322,117:0.27:439
chr10	29779977	rs61848920	A	G	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:61,35:0.36:96
chr10	29783908	rs78773460	A	G	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:228,151:0.40:379
chr10	29783984	rs3031505	GAAACT	G	5024.73	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:279,142:0.34:421
chr10	29784004	rs28427082	G	A	5071.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:144,240:0.62:384
chr10	29784072	rs2368406	G	C	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:93,49:0.35:142
chr10	29784114	rs6481601	T	C	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	29784188	rs2368401	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-4.295;QD=5.56;ReadPosRankSum=1.097;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr10	29784188	.	AAA	GAG	226	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=2;MGOF=28;MMLQ=27;MQ=53.41;NF=2;NR=6;PP=226;QD=34.9334843578;SC=GGATCTCCAGAAATCCCAGGG;SbPval=0.42;Source=Platypus;TC=17;TCF=3;TCR=14;TR=8;WE=29784198;WS=29784178;set=Platypus	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	29784190	rs2368400	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-4.295;QD=5.56;ReadPosRankSum=0.908;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr10	29822032	rs1247696	C	T	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	29839864	rs1270874	A	C	17027.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr10	29891161	rs11007666	A	G	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr10	29891260	rs12416605	C	T	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	29891321	rs2505901	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	30306804	rs2478839	G	A	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	30316072	rs3739998	C	G	10230.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr10	30317073	rs9337951	G	A	9509.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr10	30317949	rs2478835	C	T	11858.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr10	30611614	rs2484284	C	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	30615638	rs1029172	A	G	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	30629082	rs2689215	C	T	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	30629136	rs1047988	G	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	30629226	rs1047991	G	A	6806.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	30629434	rs36002941	CTATTT	C	1313.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	30901722	rs3832672	GC	G	1164.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	30901756	rs9954	G	A	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	30918385	.	TG	T	563	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=26;MQ=57.33;NF=14;NR=2;PP=563;QD=37.875;SC=TGCCTTAGAATGTTAACTGAT;SbPval=0.99;Source=Platypus;TC=55;TCF=34;TCR=21;TR=16;WE=30918397;WS=30918375;set=Platypus	GT:AD:AF:DP	0/1:39,16:0.29:55
chr10	30918486	rs75095145	G	A	4328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-7.499;QD=10.71;ReadPosRankSum=4.748;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:280,124:0.31:404
chr10	30918492	rs76101300	G	T	4395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-8.184;QD=11.07;ReadPosRankSum=4.722;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:271,126:0.32:397
chr10	30918549	rs201069868	G	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:189,76:0.29:265
chr10	30918597	rs74551644	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=7.198;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-1.994;QD=0.77;ReadPosRankSum=-3.353;SOR=1.462;set=HC	GT:AD:AF:DP	0/1:157,25:0.14:182
chr10	30974174	rs4749580	T	C	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr10	30978164	rs28363791	A	G	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.36;QD=23.51;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	30978206	rs61844348	G	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=49.03;MQRankSum=-4.679;QD=2.60;ReadPosRankSum=-3.315;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr10	30978274	rs4988769	T	C	2437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.689;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.358;MLEAC=1;MLEAF=0.500;MQ=49.63;MQRankSum=-2.447;QD=19.35;ReadPosRankSum=1.993;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,114:0.90:126
chr10	30978288	rs71023602	C	CAGTTT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.546;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=12.315;MLEAC=1;MLEAF=0.500;MQ=49.65;MQRankSum=-2.500;QD=0.39;ReadPosRankSum=-1.918;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:128,11:0.08:139
chr10	30982453	rs7068641	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.69;QD=28.80;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	30982475	rs7084628	A	G	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.53;QD=25.43;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	30982526	rs7068784	T	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.64;QD=25.44;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	30985081	rs10826846	G	A	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	30986240	rs138927815	C	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	30986242	rs11008188	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	30986244	rs11007616	A	G	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	30986253	rs4747726	G	A	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.82;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	30986296	rs4749587	C	T	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	30986364	rs7078530	G	A	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr10	30989188	rs10740829	G	C	12585.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=25.32;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,497:1.00:497
chr10	30993404	rs11008192	G	A	12929.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr10	30993448	rs10826848	G	A	13607.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr10	31001494	rs1826619	A	C	12117.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.990;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;MQRankSum=-0.114;QD=25.19;ReadPosRankSum=1.139;SOR=0.230;set=HC	GT:AD:AF:DP	1/1:1,480:1.00:481
chr10	31803516	rs220060	G	A	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	32307534	rs11428920	T	TA	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	32307536	rs55938482	T	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	32309005	rs1775715	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	32311969	rs176924	A	G	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	32324718	rs150931224	TTC	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-4.447;QD=0.17;ReadPosRankSum=0.123;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:285,31:0.10:316
chr10	32575793	rs2986931	A	G	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	32667234	rs201264123	GA	G	43	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	32740798	rs146679927	C	CT	5155.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=31.06;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	32742256	rs2490505	T	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	32745396	rs2244153	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	32751901	rs2505380	G	A	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	32763113	rs2002079	G	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	32781030	rs2990982	C	T	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	32806972	rs2990984	C	T	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	32807550	rs3006708	G	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	32832214	rs2990986	G	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	32856936	rs35386168	T	TG	198.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.17;QD=22.08;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	32873056	rs2947085	A	G	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	32974969	rs1762526	A	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	33015782	rs928701	G	A	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	33018351	rs1414548	G	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	33093858	.	TACAC	T,TAC	2960.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.44;QD=31.50;SOR=0.874;set=HC	GT:AD:AF:DP	1/2:0,14,80:0.15,0.85:94
chr10	33113633	rs117792712	G	T	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	33123824	rs4448627	G	C	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	33143396	rs1418538	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	33144132	.	G	GT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=3.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.071;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr10	33165226	rs2488305	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	33165422	rs12217414	G	A	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	33190567	rs2153875	C	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	33197130	rs77744583	GCTTT	G	802.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	33208720	rs3780876	T	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	33209266	rs2230396	G	T	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	33214802	rs2298141	A	G	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	33471761	rs148435065	GCA	G	275.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr10	33542835	rs7074620	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	33545464	rs10827221	G	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	33552407	rs2070299	G	A	149.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	33552518	rs2070298	A	C	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	33552522	rs2070297	G	A	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	33552695	rs2070296	CA	TG	11766.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	33619562	rs1411924	C	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	34408636	rs11009651	T	C	11600.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:2,451:1.00:453
chr10	34619946	rs10740885	A	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	34620220	rs3781128	C	T	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	34636820	rs7077783	C	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	34663981	.	A	AACACAC	630.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.10;ReadPosRankSum=1.208;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:1,16:0.94:17
chr10	34666864	rs10740890	C	T	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	34688287	rs2796011	G	A	7357.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	35324076	rs2244174	A	G	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	35625845	rs59114674	C	G	965.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	35625846	.	G	GC	956.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.60;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	35772402	rs3802509	G	A	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	35894666	rs627267	A	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	35894761	rs637881	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	35928224	rs625858	C	G	7914.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr10	35930412	rs142623421	C	CG	218.74	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr10	36813198	rs2503082	A	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	37419218	rs61737412	C	T	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	37425759	.	G	GTGTA	85	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5032;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=62.65;NF=0;NR=2;PP=85;QD=45.5;SC=GTGTGTGTGTGTATATATATA;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=37425767;WS=37425749;set=Platypus	GT:AD:AF:DP	0/1:1,2:0.67:3
chr10	37433853	.	T	C	74	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=2;MGOF=83;MMLQ=20;MQ=54.61;NF=4;NR=4;PP=74;QD=13.5964015684;SC=TGAAAATAGATTTGTATATGT;SbPval=0.58;Source=Platypus;TC=17;TCF=9;TCR=8;TR=8;WE=37433861;WS=37433843;set=Platypus	GT:AD:AF:DP	1/0:9,8:0.47:17
chr10	37433929	.	G	T	72	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=2;MGOF=106;MMLQ=27;MQ=54.72;NF=3;NR=6;PP=72;QD=11.8634680608;SC=ATAGATCAGAGGTTCCCATCA;SbPval=0.82;Source=Platypus;TC=25;TCF=11;TCR=14;TR=9;WE=37433937;WS=37433919;set=Platypus	GT:AD:AF:DP	0/1:16,9:0.36:25
chr10	37433975	rs200315308	T	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-4.871;QD=3.30;ReadPosRankSum=-0.565;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr10	37433982	rs200974283	C	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-4.601;QD=2.96;ReadPosRankSum=-0.439;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr10	37433983	rs200164455	G	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-4.601;QD=2.96;ReadPosRankSum=-0.439;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr10	37433988	rs200031600	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.827;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-4.310;QD=3.06;ReadPosRankSum=0.377;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:28,4:0.12:32
chr10	37488689	rs1209750	G	C	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	38245843	rs9299755	C	CA	776.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=6.300;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.755;QD=9.14;ReadPosRankSum=-1.462;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:25,60:0.71:85
chr10	38246545	rs2799499	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	38260558	rs200231946	AACACACACAC	A,AAC	4201.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=128;set=Intersection	GT:AF:DP	1/2:0.27,0.73:111
chr10	38299843	rs2293962	G	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	38301353	.	GTTTTT	G	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.680;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr10	38306128	rs2738208	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.91;QD=26.99;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	38344700	rs2505232	C	G	12511.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=25.33;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr10	38385316	rs2474572	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	38385441	rs2474573	G	A	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	38407519	rs176889	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	38537070	rs1780145	A	G	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.34;QD=26.97;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	38599101	rs34686283	C	CT	1976.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	38645343	rs75687299	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=54.82;MQRankSum=-5.356;QD=2.20;ReadPosRankSum=4.324;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:115,32:0.22:147
chr10	38645403	rs72639552	T	C	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.96;QD=25.49;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	38645424	rs117839956	C	T	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.15;QD=25.48;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	38647171	rs2800473	C	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	38647463	rs35215821	A	AT	3255.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:22,174:0.89:196
chr10	38650104	rs2804643	A	G	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	38654940	rs2804645	T	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.76;QD=25.80;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	38667003	rs2804622	A	G	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.59;QD=25.50;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	38740353	rs2754385	T	C	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	38740382	rs2754386	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	42380038	rs9731223	G	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.42;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	42905431	rs3004228	A	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	42905510	rs2419684	A	C	4863.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr10	42907201	rs2505860	G	A	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.09;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr10	42907260	rs2505861	T	C	7138.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr10	42920832	rs2505872	G	A	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	42920884	rs2489720	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	42922568	rs2489723	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.67;QD=42.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	42922579	rs80120306	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.67;QD=42.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	42922595	rs2489725	A	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.44;QD=41.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	42924560	rs6143878	TCACCTTTGCTTGATATGATAATATAGTGCCAAGG	T	2429.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.88;QD=44.18;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	42928605	rs2000380	T	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	42928826	.	A	T	280	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=1;MGOF=37;MMLQ=26;MQ=58.99;NF=5;NR=8;PP=280;QD=24.2131701959;SC=GAAGTATAAGATAAACTTATC;SbPval=0.42;Source=Platypus;TC=53;TCF=17;TCR=36;TR=13;WE=42928834;WS=42928804;set=Platypus	GT:AD:AF:DP	1/0:40,13:0.25:53
chr10	42941685	rs11455507	T	TA	787.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	42947226	.	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-2.100;QD=4.72;ReadPosRankSum=2.100;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr10	42947235	rs112847973	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-1.834;QD=7.29;ReadPosRankSum=1.834;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr10	42947241	.	C	T	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-1.645;QD=8.75;ReadPosRankSum=1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr10	42947242	.	C	A	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-1.645;QD=8.75;ReadPosRankSum=1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr10	42947243	rs189436593	G	A	46.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-1.645;QD=9.35;ReadPosRankSum=1.645;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr10	42949664	rs2490085	A	T	12330.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.48;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,484:1.00:484
chr10	43089965	rs210280	G	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	43119123	rs158377	G	T	1831.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.656;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.10;ReadPosRankSum=2.049;SOR=0.265;set=HC	GT:AD:AF:DP	1/1:1,75:0.99:76
chr10	43119159	rs158378	T	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	43128395	rs209391	C	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	43132232	rs209387	A	G	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	43232419	rs618687	A	G	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;MQ=59.11;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	43280057	rs55869085	CTT	C	8402.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.88;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	43281089	rs7074877	T	C	6837.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr10	43288642	rs7904220	A	C	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	43291861	rs2078397	A	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	43292830	rs17344904	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	43493188	rs61845316	A	G	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	43572950	rs12246855	A	G	1462.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=43.02;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	43572950	.	AA	GC	290	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=2;MGOF=3;MMLQ=20;MQ=59.47;NF=4;NR=6;PP=290;QD=34.3467874862;SC=GCGGCGGGCGAAGGGCAGGAC;SbPval=0.64;Source=Platypus;TC=12;TCF=5;TCR=7;TR=10;WE=43572959;WS=43572940;set=Platypus	GT:AD:AF:DP	1/1:2,10:0.83:12
chr10	43572951	rs12246856	A	C	1462.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=44.33;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	43595836	.	A	AT	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=0.687;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:17,47:0.73:64
chr10	43595968	rs1800858	A	G	8781.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr10	43600689	rs2435352	A	G	9047.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:1,359:1.00:360
chr10	43604390	rs1864404	A	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	43606687	rs1800860	A	G	14737.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:1,576:1.00:577
chr10	43607756	rs3026750	G	A	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	43607759	rs34827976	GC	G	3058.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	43613843	rs1800861	G	T	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	43620551	rs2742236	G	A	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	43622217	rs2075912	T	C	11166.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr10	43657811	rs2257767	T	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	43659536	rs2503865	C	T	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	43671378	rs61579799	GT	G	56.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	43678796	rs2435381	C	T	11158.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr10	43695049	rs1254964	T	C	10624.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr10	43883342	rs1126487	T	A	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	43932479	rs2244396	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	43932542	rs114589475	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	43977929	.	C	T	6579.77	.	AC=2;AF=1.00;AN=2;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr10	44103923	rs3128239	G	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	44104513	rs7342073	C	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	44868856	rs266091	A	C	12526.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.502;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.78;ReadPosRankSum=-1.375;SOR=0.292;set=HC	GT:AD:AF:DP	1/1:1,485:1.00:486
chr10	44874253	rs266085	C	T	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	45466726	rs4948938	G	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	45496120	rs12269028	A	T	7397.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	45891484	rs2029253	A	G	5082.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	45924023	rs1565096	G	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	45924256	rs1565097	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	45939136	rs7900977	T	C	11522.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.55;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr10	45939617	rs2229136	A	G	13661.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr10	45939818	rs2288619	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	45953767	rs7908745	A	G	6964.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	45954807	rs2279433	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	45956828	rs3764990	G	A	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	45958676	rs17157825	G	A	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	45958881	rs2291429	A	G	11351.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr10	45959385	rs12769244	G	A	7727.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	45959652	rs12771275	C	A	7521.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr10	45984725	.	C	CA	76.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.91;ReadPosRankSum=-0.914;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	46135971	rs12354709	C	T	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	46148326	rs7091141	T	C	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	46952667	rs3120429	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=9.410;MLEAC=1;MLEAF=0.500;MQ=50.49;MQRankSum=-3.450;QD=2.70;ReadPosRankSum=0.591;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr10	46960084	rs9422009	G	A	5906.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:122,265:0.68:387
chr10	46963738	rs3127783	A	G	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:67,147:0.69:214
chr10	46965018	rs3127785	C	G	18527.77	.	AC=1;AF=0.500;AN=2;DB;DP=1320;set=Intersection	GT:AD:AF:DP	0/1:418,888:0.68:1306
chr10	46965727	rs1889849	G	A	11305.77	.	AC=1;AF=0.500;AN=2;DB;DP=817;set=Intersection	GT:AD:AF:DP	0/1:272,539:0.66:811
chr10	46967672	rs2152530	C	T	19070.77	.	AC=1;AF=0.500;AN=2;DB;DP=1384;set=Intersection	GT:AD:AF:DP	0/1:483,895:0.65:1378
chr10	46968762	rs3127790	C	G	8498.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:203,396:0.66:599
chr10	46968879	rs10588658	AAC	A	1095.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.708;QD=19.92;ReadPosRankSum=-0.055;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr10	46969496	rs3127792	A	G	12393.77	.	AC=1;AF=0.500;AN=2;DB;DP=923;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:311,581:0.65:892
chr10	46970573	rs6587511	C	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr10	46970654	rs915449	C	A	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:31,83:0.73:114
chr10	46970792	rs915450	G	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr10	46998719	rs201733825	GTCAC	G	2261.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chr10	46998795	rs3127677	A	G	9473.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:213,442:0.67:655
chr10	46998894	rs3127817	G	A	23247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DB;DP=1572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=1.125;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:473,1079:0.70:1552
chr10	46998995	rs4926045	C	G	7420.77	.	AC=1;AF=0.500;AN=2;DB;DP=1357;set=Intersection	GT:AD:AF:DP	0/1:907,438:0.33:1345
chr10	46998999	rs3127818	G	A	20552.77	.	AC=1;AF=0.500;AN=2;DB;DP=1388;set=Intersection	GT:AD:AF:DP	0/1:452,925:0.67:1377
chr10	46999019	rs3127819	G	A	19785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=1432;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=1.198;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:476,942:0.66:1418
chr10	46999030	rs4925989	C	T	7686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.864;ClippingRankSum=0.000;DB;DP=1422;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=1.520;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:964,445:0.32:1409
chr10	46999151	rs3127820	T	C	9514.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:194,441:0.69:635
chr10	46999178	rs7090312	A	C	3586.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:429,206:0.32:635
chr10	46999189	rs3127678	C	T	17606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.68;ReadPosRankSum=0.518;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:219,441:0.67:660
chr10	46999190	rs3127679	A	G	29749.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,666:1.00:666
chr10	46999198	rs3127680	G	T	17609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=0.213;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:236,457:0.66:693
chr10	46999465	rs3127682	A	G	8925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=640;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=3.035;QD=14.19;ReadPosRankSum=0.204;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:209,420:0.67:629
chr10	46999484	rs11204658	G	T	3094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.94;MQRankSum=-4.700;QD=4.94;ReadPosRankSum=0.877;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:430,197:0.31:627
chr10	46999577	rs11204659	G	T	10376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=984;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.27;MQRankSum=-7.924;QD=10.64;ReadPosRankSum=0.319;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:662,313:0.32:975
chr10	46999591	rs112620425	C	CATGAGGGAG	23880.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=960;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=61.31;MQRankSum=8.311;QD=26.74;ReadPosRankSum=1.612;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:303,590:0.66:893
chr10	46999596	rs7895979	G	A	10510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=974;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.18;MQRankSum=-7.406;QD=10.94;ReadPosRankSum=1.893;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:660,301:0.31:961
chr10	46999604	rs3127683	A	G	34082.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.848;ClippingRankSum=0.000;DB;DP=926;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;MQRankSum=0.425;QD=37.33;ReadPosRankSum=-0.859;SOR=0.370;set=HC	GT:AD:AF:DP	1/1:3,910:1.00:913
chr10	46999732	rs4579877	G	A	7638.77	.	AC=1;AF=0.500;AN=2;DB;DP=1128;set=Intersection	GT:AD:AF:DP	0/1:689,426:0.38:1115
chr10	46999747	rs3127821	T	C	14022.77	.	AC=1;AF=0.500;AN=2;DB;DP=1080;set=Intersection	GT:AD:AF:DP	0/1:398,666:0.63:1064
chr10	46999922	rs4926046	G	T	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:291,147:0.34:438
chr10	47000004	rs3127822	T	C	19780.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:0,745:1.00:745
chr10	47000071	rs4244614	G	A	5960.77	.	AC=1;AF=0.500;AN=2;DB;DP=1049;set=Intersection	GT:AD:AF:DP	0/1:694,347:0.33:1041
chr10	47000079	rs3127823	T	C	14546.77	.	AC=1;AF=0.500;AN=2;DB;DP=1049;set=Intersection	GT:AD:AF:DP	0/1:347,695:0.67:1042
chr10	47000146	rs3127684	C	T	10029.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:208,462:0.69:670
chr10	47000188	rs3127824	A	G	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	47000239	rs7912299	C	T	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr10	47087474	rs1129838	C	T	30711.77	.	AC=2;AF=1.00;AN=2;DB;DP=1179;set=Intersection	GT:AD:AF:DP	1/1:1,1156:1.00:1157
chr10	47087501	rs3824733	C	T	5813.77	.	AC=1;AF=0.500;AN=2;DB;DP=1141;set=Intersection	GT:AD:AF:DP	0/1:772,347:0.31:1119
chr10	47087608	rs1936339	T	C	30748.77	.	AC=2;AF=1.00;AN=2;DB;DP=1178;set=Intersection	GT:AD:AF:DP	1/1:2,1161:1.00:1163
chr10	47087680	rs1048157	C	T	33022.77	.	AC=2;AF=1.00;AN=2;DB;DP=1238;set=Intersection	GT:AD:AF:DP	1/1:0,1228:1.00:1228
chr10	47087731	rs1048158	C	T	40394.77	.	AC=2;AF=1.00;AN=2;DB;DP=1569;set=Intersection	GT:AD:AF:DP	1/1:0,1537:1.00:1537
chr10	47087830	rs1129839	G	A	33197.77	.	AC=2;AF=1.00;AN=2;DB;DP=1276;set=Intersection	GT:AD:AF:DP	1/1:0,1264:1.00:1264
chr10	47416867	rs28407202	G	A	6454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DB;DP=1177;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=7.632;QD=5.50;ReadPosRankSum=1.695;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:785,389:0.33:1174
chr10	47416908	rs3127728	A	G	3038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.639;ClippingRankSum=0.000;DB;DP=966;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-20.705;QD=3.16;ReadPosRankSum=6.746;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:734,227:0.24:961
chr10	47667164	rs4076960	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	47667380	rs4076959	C	T	18963.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,746:1.00:746
chr10	47668707	rs4409768	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	47668721	rs4570521	G	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	47669277	rs61845226	C	G	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	47669320	rs113650392	G	A	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.12;QD=40.89;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	47669324	rs113530203	A	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.19;QD=43.87;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	47677955	rs6602879	A	G	3132.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	47678021	rs7100993	C	T	6555.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	47678193	.	C	G	1086.77	.	AC=2;AF=1.00;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	47701302	rs7091749	G	C	24143.77	.	AC=2;AF=1.00;AN=2;DB;DP=1014;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=24.36;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,991:1.00:991
chr10	47756004	rs3013885	T	C	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chr10	47756145	rs200192962	T	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	47915898	rs183064568	A	G	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.860;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=15.331;MLEAC=1;MLEAF=0.500;MQ=48.72;MQRankSum=-4.601;QD=6.20;ReadPosRankSum=-0.268;SOR=1.924;set=HC	GT:AD:AF:DP	0/1:97,75:0.44:172
chr10	47916013	rs187960913	C	A	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.23;QD=28.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	48386110	rs2070706	T	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	48414570	rs7923671	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	48426798	rs743509	C	T	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	48429650	rs2236723	G	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	49392575	rs931743	C	G	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	49419975	rs17770021	C	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	49420008	rs1864345	T	C	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	49420066	rs17011019	A	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	49420315	rs75867102	C	T	176.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	49440346	rs6537556	C	T	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr10	49448329	rs7092864	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	49609578	rs3730154	C	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	49633873	.	T	TAC	592.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	49633875	.	T	A	646.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.20;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	49633877	.	A	AATACATT	907.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=60.52;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	49633879	.	T	TTGTAAATG	1240.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=59.08;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	49654342	rs1051508	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	49654403	rs1051507	C	T	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	49658248	rs1867585	G	A	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	49659559	rs10776601	C	T	13933.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,547:1.00:547
chr10	49659637	rs3827681	T	C	10399.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr10	49661341	rs7092959	A	G	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	49662884	rs11101327	A	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	49667713	rs1867575	G	A	17892.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,698:1.00:698
chr10	49667795	rs3853761	T	C	12261.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr10	49687556	rs4240511	A	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	49687594	rs4838601	G	A	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	49687800	rs4080665	G	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	49687850	rs3888298	G	A	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	49687964	rs4240513	A	C	13278.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.63;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr10	49687971	rs4240514	T	C	13030.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr10	49688014	rs4838602	C	A	5985.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.060;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=9.473;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=1.332;SOR=0.218;set=HC	GT:AD:AF:DP	1/1:3,238:0.99:241
chr10	49690351	rs1445157	T	C	6432.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr10	49701652	rs10735226	G	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	49790972	rs2289808	C	T	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	49804554	rs10776627	A	G	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	49804785	rs10745280	T	G	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	49860130	rs2377612	G	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	49860153	rs2377613	G	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	49860258	rs2377614	A	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	49929491	rs10857625	A	C	5948.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr10	49933974	rs7072606	T	C	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	49968596	rs11101460	G	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	49983890	rs1871604	G	T	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	50108145	rs2671693	G	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	50109902	rs2663046	G	A	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	50149674	rs2671717	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	50151575	rs76716285	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	50151578	rs78878337	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	50154768	rs2663066	A	T	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	50155036	.	TAC	T	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-0.584;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr10	50165411	rs3750867	T	C	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	50186317	rs2292585	G	A	8548.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr10	50190923	rs61366126	G	GA	902.37	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:9,50:0.85:59
chr10	50227785	rs1913525	T	C	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	50227870	rs1913524	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	50227927	rs1913523	C	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	50339754	rs73302786	G	T	15601.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr10	50339962	rs75297145	A	T	8798.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr10	50342079	rs7097375	G	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	50374819	rs9418839	T	C	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	50376106	rs2466756	A	C	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	50531604	rs7093235	T	C	7144.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	50532588	rs10857469	C	G	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	50532683	rs7921186	T	C	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	50532812	rs11101093	A	G	7663.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr10	50533463	rs10857470	T	A	9794.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr10	50533617	rs2377940	T	C	16265.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr10	50533841	rs11101094	G	C	6263.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	50534350	rs11101095	G	A	17120.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr10	50534969	.	A	AACACACACACACAC	2107.73	.	AC=2;AF=1.00;AN=2;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;QD=43.91;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	50594509	rs12261515	C	A	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	50667105	rs2228529	T	C	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	50678369	rs2228527	T	C	13195.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,515:1.00:515
chr10	50678717	rs2228526	T	C	12109.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr10	50691037	rs4253165	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	50691360	rs4253162	T	C	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	50701156	rs4253132	G	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	50723684	rs4253073	G	A	10178.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr10	50724016	rs4253072	C	T	7147.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	50740876	rs2228524	G	C	14422.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr10	50818762	rs1880675	C	T	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	50820345	rs8187730	C	A	20793.77	.	AC=2;AF=1.00;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	1/1:0,795:1.00:795
chr10	50822192	rs7903315	G	C	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.34;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	50822226	rs7923716	T	G	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	50828506	rs1880677	G	A	8194.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	50833839	rs868750	G	A	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	50856652	rs4838544	G	A	6404.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr10	50856772	rs10580502	TAC	T	405.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;QD=31.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	50863147	rs8178992	T	C	15296.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,602:1.00:602
chr10	50863565	rs7076926	C	T	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	50863623	rs7094421	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	50887651	rs1153781	G	C	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	50901809	rs1153797	T	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	50916484	rs1258236	A	G	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	50943186	rs1258256	C	T	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	50944009	rs1258257	T	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	50944613	rs1258258	C	T	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	50947918	rs1258259	A	G	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	50952851	rs1268723	C	T	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	50960209	rs1258184	G	A	15826.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,612:1.00:612
chr10	51124153	rs2664655	T	G	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	51537292	rs4131357	C	A	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	51539745	rs35494443	AC	A	736.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	51539762	rs10763588	G	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	51540291	rs11006274	T	C	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	51549496	rs10993994	T	C	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr10	51549545	rs4935176	G	T	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	51568533	.	CT	C	50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr10	51620317	rs200147310	A	G	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=43.63;MQRankSum=-0.288;QD=15.74;ReadPosRankSum=-0.998;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr10	51620499	rs78584401	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr10	51623004	rs201547968	T	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,49:0.39:126
chr10	51623024	rs146205287	A	C	1817.73	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:155,109:0.41:264
chr10	51623052	rs143647852	C	CT	5561.73	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:233,147:0.39:380
chr10	51623061	rs115719811	G	A	5726.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:260,164:0.39:424
chr10	51623147	rs373071373	C	T	1687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=47.73;MQRankSum=-10.579;QD=7.27;ReadPosRankSum=-2.451;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:138,94:0.41:232
chr10	51623174	rs141118546	C	A	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.88;MQRankSum=-6.087;QD=5.75;ReadPosRankSum=0.071;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:77,38:0.33:115
chr10	51623190	rs137912947	T	C	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.82;MQRankSum=-5.016;QD=6.16;ReadPosRankSum=-0.200;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:40,23:0.37:63
chr10	51623866	rs374725846	A	G	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.40;MQRankSum=-3.521;QD=10.17;ReadPosRankSum=-0.067;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:33,35:0.51:68
chr10	51631812	rs200391397	A	G	4124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=47.88;MQRankSum=-9.720;QD=9.50;ReadPosRankSum=0.899;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:225,209:0.48:434
chr10	51632906	rs146420399	G	A	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.89;MQRankSum=-8.448;QD=9.73;ReadPosRankSum=0.011;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:73,66:0.47:139
chr10	51632971	rs200644678	A	G	4420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.27;MQRankSum=-13.846;QD=8.31;ReadPosRankSum=0.281;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:291,241:0.45:532
chr10	51633027	rs115081809	T	C	5340.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:365,296:0.45:661
chr10	51859716	.	C	A	191.78	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.77;QD=23.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	51859758	rs200416566	A	G	302.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.550;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.93;MQRankSum=0.683;QD=18.92;ReadPosRankSum=-0.624;SOR=0.275;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr10	51974489	.	T	C	182.78	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.23;QD=22.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	51974685	rs201931325	C	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	52008140	rs7071083	C	T	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	52070947	rs2251601	T	C	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	52086939	rs2246994	C	G	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	52569637	rs10994563	G	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	52576068	rs4245008	G	A	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	52751070	rs79957958	A	AGCC	4460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.407;QD=33.79;ReadPosRankSum=2.351;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:17,115:0.87:132
chr10	53667443	rs10823860	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	53667476	rs7081919	G	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	53814229	rs1904010	G	T	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	53814383	rs12778630	C	T	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,205:1.00:206
chr10	53841337	rs1904024	A	G	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr10	53841639	rs5784902	AG	A	30.71	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	54074757	rs2241529	A	G	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	54076271	rs1569198	A	G	7300.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr10	54530694	rs1982267	G	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	55626367	rs10825135	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	55663198	rs10740559	A	C	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	55663202	rs2593124	T	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	55719652	rs2593107	C	T	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr10	55779915	rs3812658	G	A	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.321;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	55838950	rs1911433	A	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	55943184	rs7093302	T	C	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	55973889	rs10763086	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	55996761	rs721825	C	T	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	56076975	rs10763098	A	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	56077209	rs10740579	G	A	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	56089166	rs11004239	C	T	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	56089223	rs11004240	A	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	56089263	rs857395	G	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	56106173	rs34164469	T	C	7005.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.93;ReadPosRankSum=-1.130;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:2,279:0.99:281
chr10	56335031	rs7070334	A	G	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	56335067	rs7070440	A	G	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	56335099	rs10825362	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.04;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	56345303	rs4570492	T	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	56345374	rs71901521	GT	G	1055.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.573;QD=12.13;ReadPosRankSum=2.041;SOR=0.683;set=HC	GT:AD:AF:DP	1/1:9,78:0.90:87
chr10	56345491	rs2026411	C	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.73;QD=25.51;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	58118630	rs2241666	T	C	17024.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:1,677:1.00:678
chr10	58119976	rs3861049	G	A	10783.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr10	59064371	rs1275284	C	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	60095143	rs1905456	T	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	60127732	rs61749178	C	G	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	60148415	rs34084383	G	GT	294.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	60148692	rs2306604	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	60160312	.	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.219;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr10	60273121	rs7100474	T	C	11224.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr10	60273155	rs7079648	C	A	7557.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr10	60273189	rs10571555	ACGGC	A	5795.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	60558125	rs2393503	A	T	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	60559047	rs2893789	G	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	60563062	rs4245600	G	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	60566137	rs3740451	G	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	60573753	rs9416746	G	T	9423.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr10	60577393	rs4344442	T	C	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	60588553	rs4948550	T	C	5087.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.548;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=3.143;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=-1.142;SOR=0.336;set=HC	GT:AD:AF:DP	1/1:1,199:0.99:200
chr10	60966706	rs10509097	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	60996453	rs10763600	G	A	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	60998252	rs3758565	C	T	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	61007592	rs2446724	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	61111975	rs284606	G	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	61122268	rs3078330	T	TTA	2402.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	61552692	rs1053266	G	T	6686.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	61552774	rs1053265	C	T	5409.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	61574357	.	AAC	A	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=3.620;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.278;QD=2.53;ReadPosRankSum=-2.315;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:164,41:0.20:205
chr10	61592547	rs6479654	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	61802342	rs2393603	C	A	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.304;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	61802353	rs2393604	A	T	5053.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	61802374	rs2393605	AA	TT	12377.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	61802550	rs9888033	A	T	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	61802561	rs2393607	G	T	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	61802577	rs5785427	T	TC	3677.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	61819049	rs10733757	T	G	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	61823109	rs4568956	A	G	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	61846677	.	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-0.588;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr10	61871430	rs10821675	C	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	61871598	rs4369346	A	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	61900356	rs6479694	A	C	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	61926728	rs11814723	A	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	62039654	rs1380451	G	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	62539788	rs2260179	C	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	62548098	rs2456772	G	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	62551815	rs3212319	GC	G	3194.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.75;QD=38.96;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	62551889	rs2456777	AA	GT	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	62553763	rs1871446	A	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	63170292	rs7083475	A	G	31138.77	.	AC=2;AF=1.00;AN=2;DB;DP=1221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,1205:1.00:1205
chr10	63175677	rs12766100	A	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	63422754	rs151189963	G	GGGGCCGACCCCGGCA	11626.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=50.55;SOR=1.256;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	63519674	rs2588915	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	63520698	rs1992625	T	C	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	63818920	rs3832683	GA	G	517.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	63829539	rs76296217	C	T	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	63943986	rs11297358	GT	G	143.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	63944176	rs3125730	A	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	63944188	rs7903510	A	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	63964653	rs41274060	C	T	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	63974950	rs4559572	C	G	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	63976912	rs149331212	TAGCTTC	T	11626.73	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	63977011	rs148142088	GAAAAA	G,GA	5569.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.38;SOR=1.467;set=HC	GT:AD:AF:DP	1/2:3,121,25:0.81,0.17:149
chr10	63977069	rs1432414	A	T	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	63978077	rs11355398	GA	G	748.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.316;QD=17.41;ReadPosRankSum=-0.466;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr10	63982984	rs10740069	A	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	63995983	rs3852448	C	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	64000878	rs1368158	T	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	64005711	rs3815999	C	T	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	64019037	rs10675790	A	ATAAAT	1566.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	64136710	rs149800343	CAG	C	1324.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	64136751	rs1873686	G	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	64148125	rs3852424	C	A	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	64148369	rs2893897	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	64159333	rs3758490	G	T	10171.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr10	64415184	rs7076156	A	G	7070.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	64430019	rs74796802	C	T	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	64573771	rs224083	C	T	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	64893433	rs2175197	T	C	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	64914016	rs35751397	T	TA	1175.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	64927823	rs1935	C	G	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	64944317	rs10740107	T	A	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	64945364	rs3211105	G	A	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	64953311	rs4747098	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	64960536	rs10465990	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	64967445	rs1904294	A	T	14126.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr10	64974537	rs10761725	A	T	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	65139865	rs34420480	AT	A	314.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:3,24:0.89:27
chr10	65139945	rs7477425	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	65225244	rs1061259	GA	CG	12397.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	65383515	.	A	ATGTGTG,ATGTG	351.75	.	AC=2,0;AF=1.00,0.00;AN=2;DP=14;set=Intersection	GT:AF:DP	1/1:0.91:11
chr10	65928826	rs10740151	T	C	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	68040325	rs4548513	C	T	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	68535082	rs5785786	C	CT	3277.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.21;ReadPosRankSum=-0.787;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:1,129:0.99:130
chr10	68685929	rs7902006	G	C	5918.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	68979343	rs4745933	C	G	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	69299446	rs1909654	T	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	69366602	rs3750863	T	C	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	69597948	rs117394734	C	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	69647332	rs932657	G	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	69699478	rs142773200	GAT	G	36.70	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	69719074	rs7907843	C	T	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	69750213	rs11422655	G	GA	249.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.792;QD=11.90;ReadPosRankSum=0.045;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr10	69750788	rs5785841	GA	G	2678.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.089;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.675;QD=15.31;ReadPosRankSum=-0.460;SOR=0.549;set=HC	GT:AD:AF:DP	1/1:15,160:0.91:175
chr10	69755112	rs2308195	C	CCTAT	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	69755143	rs117639735	A	G	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	69773841	rs866255	G	A	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	69799072	rs5785844	CA	C	313.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139;ClippingRankSum=-0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.62;ReadPosRankSum=1.602;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:4,23:0.85:27
chr10	69866657	rs11592680	T	C	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	69909802	rs10997948	G	A	8615.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	69909899	rs7096613	G	A	4545.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	69934467	rs3814183	A	G	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	69934535	rs7917519	G	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	69935059	rs7097776	A	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	69935235	rs6480306	T	C	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	69948844	rs10733838	T	C	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	69959097	rs7079549	G	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	69959460	rs12358413	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	69961501	rs7913146	A	G	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	69966392	rs3814185	T	G	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	70045201	rs7909365	C	A	4562.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	70045264	rs3816299	A	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	70051810	rs3835100	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	70056600	rs2394470	C	T	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	70056619	rs60698417	T	TAA	3168.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.63;ReadPosRankSum=0.673;SOR=0.336;set=HC	GT:AD:AF:DP	1/1:1,118:0.99:119
chr10	70066553	rs12359690	G	A	5885.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr10	70123243	rs10823183	G	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	70152683	rs11432211	C	CA	61.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.73;ReadPosRankSum=0.366;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr10	70153014	rs11432212	C	CA	152.14	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr10	70166913	rs59831114	T	G	3089.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.72;ReadPosRankSum=1.595;SOR=2.990;set=HC	GT:AD:AF:DP	1/1:1,124:0.99:125
chr10	70179713	rs7912227	C	G	6902.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	70182680	rs10998153	C	T	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	70197115	rs12775711	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	70204516	rs4237318	G	T	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	70206033	rs34922453	TA	T	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:6,90:0.94:96
chr10	70210007	.	GA	G	49	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=12;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=49;QD=13.75;SC=CACTTGGCCTGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=4;WE=70210015;WS=70209997;set=Platypus	GT:AD:AF:DP	0/1:9,4:0.31:13
chr10	70225504	rs3758626	G	T	9069.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr10	70230336	rs10823209	A	C	10458.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr10	70231701	rs1535539	A	G	12468.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr10	70246874	rs10998222	A	G	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	70252822	rs11288507	GA	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.14;ReadPosRankSum=0.470;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	70253085	rs3758627	G	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	70253113	rs35771588	A	G	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	70263579	rs10823215	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	70266523	rs2275715	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	70276728	rs2664412	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	70392319	rs10733844	G	A	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	70405855	rs3998860	A	G	10803.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr10	70442868	rs11284778	GA	G	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	70481547	rs1616158	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	70482238	rs113255973	G	A	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	70497799	rs1149679	C	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	70502288	rs1300253	G	A	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	70502426	rs1300252	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	70520636	rs58477996	CAAA	C	988.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.424;QD=30.90;ReadPosRankSum=1.607;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr10	70525591	rs1149688	G	A	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	70531217	rs10823258	C	T	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	70534744	rs1782323	A	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	70549579	rs11594683	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	70641860	rs1341667	T	C	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	70673430	rs5030891	G	A	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	70696009	rs7084726	T	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	70696713	rs5030895	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	70696908	rs1539166	G	T	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr10	70700944	rs5030900	A	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	70716106	rs5030896	A	G	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	70722939	rs5030897	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	70723857	.	G	GA	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=1.846;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:83,39:0.32:122
chr10	70734599	rs5030902	A	T	2896.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=-0.219;QD=21.78;ReadPosRankSum=-0.422;SOR=0.433;set=HC	GT:AD:AF:DP	1/1:4,129:0.97:133
chr10	70742192	rs2251911	T	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	70748784	rs2255607	G	A	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	70856852	rs2229498	G	A	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	70946101	rs200502034	G	A	484.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.08;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	70962381	rs2279928	C	G	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	70968199	rs4746821	G	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	70998738	rs4145930	G	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	71010026	rs4745978	T	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	71018660	rs1111335	T	C	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	71027231	rs2611	G	C	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	71055232	rs2894081	T	C	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	71055459	rs4746837	T	C	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	71060610	rs906220	A	G	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	71060634	rs906221	G	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	71060696	rs906222	G	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=25.42;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	71060707	rs906223	T	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=25.48;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	71098195	rs906216	G	T	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	71098295	rs7912524	T	A	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	71098436	rs10578071	AGT	A	331.79	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr10	71103597	rs1133189	C	G	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	71128545	rs12359036	A	G	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	71142420	rs748235	G	A	10444.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr10	71144702	rs749105	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	71168685	rs55953810	A	T	6739.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	71174636	rs150956058	TAC	T	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=962;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.327;QD=0.30;ReadPosRankSum=1.206;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:828,93:0.10:921
chr10	71243323	rs10823396	C	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	71244832	rs2305201	C	A	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	71263991	rs5785921	G	GT	609.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	71264325	rs1652804	G	A	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	71267411	rs201904794	T	TG	118.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.417;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr10	71267412	rs1665583	T	G	338.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=-0.274;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:17,26:0.60:43
chr10	71267417	rs3750790	T	G	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.104;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr10	71332204	rs4536103	A	G	7636.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	71332842	rs144643855	CTG	C	3044.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	71620388	rs10762320	G	A	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.21;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	71620403	rs10823443	G	A	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.77;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	71620436	rs67173564	A	AC	8596.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=35.38;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	71620671	rs4341432	C	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	71637905	rs10823446	C	A	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	71640491	rs1227783	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	71647196	rs113746607	G	GT	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.691;QD=1.98;ReadPosRankSum=-0.678;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:74,28:0.27:102
chr10	71649309	rs2683572	A	G	4648.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	71657272	rs1227746	A	G	19648.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=775;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=0.363;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:2,771:1.00:773
chr10	71658512	rs1227747	G	A	18498.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,727:1.00:727
chr10	71665676	rs2683575	G	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	71685532	rs1227778	G	C	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	71686677	rs2274178	G	A	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	71686905	rs3215785	CG	C	3925.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	71689645	rs2763339	T	G	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	71689966	rs59283631	TG	T	1844.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	71689968	rs115514231	G	A	1829.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	71692556	rs7094009	C	G	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	71703995	rs3750780	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	71849772	rs16927265	A	G	10830.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr10	71851429	rs72075869	CA	C	380.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=5.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=2.835;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:13,41:0.76:54
chr10	71868763	rs2271698	G	A	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	71876382	rs2394656	C	T	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	71880757	rs4746962	A	C	10047.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,381:1.00:382
chr10	71905569	rs3750774	C	A	5883.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	71906150	rs4746970	T	C	7319.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr10	71921591	rs2271690	G	A	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	71969989	rs12412466	C	T	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	71970259	rs3969945	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.76;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	71974468	rs7911572	C	T	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	71989884	rs9415958	T	C	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	71990196	rs7904074	G	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	71993150	rs187499929	G	T	6380.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr10	72043389	rs1889394	T	G	20618.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.77;ReadPosRankSum=0.659;SOR=0.432;set=HC	GT:AD:AF:DP	1/1:3,797:1.00:800
chr10	72061079	rs10740336	C	T	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	72061420	rs4746997	A	G	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	72083835	rs3750764	C	A	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	72136000	rs10999304	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	72164470	rs3750766	C	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	72179746	rs1043098	C	T	11811.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr10	72181460	rs3793809	G	T	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	72195439	rs1904589	T	C	10062.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr10	72201219	rs10999338	G	A	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	72207517	rs34717077	AC	A	1944.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	72288964	rs60188579	GCCCCC	G	6071.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.077;QD=32.47;SOR=0.489;set=HC	GT:AD:AF:DP	1/1:3,184:0.98:187
chr10	72294100	rs41277992	C	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	72297411	rs871870	T	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	72298304	rs10999381	T	C	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	72298631	rs1122918	T	C	17258.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,672:1.00:672
chr10	72324143	rs7093516	A	G	5617.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr10	72326163	rs4747057	G	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	72360038	rs10999426	G	A	9045.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	72360059	rs10999427	C	T	11973.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr10	72432498	rs12762780	C	A	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	72432521	rs12762616	A	C	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	72492212	rs2587478	T	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	72492244	rs10740357	A	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	72493509	rs7085143	A	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	72493876	rs10740358	T	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	72494778	rs12765664	G	A	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.66;SOR=2.080;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	72496375	rs1861517	A	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	72500763	rs10823607	T	C	10320.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr10	72500863	rs10999500	C	G	8213.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	72505315	rs2791183	A	G	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	72509809	rs2541229	C	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	72513682	rs2587475	C	T	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	72517837	rs6480463	C	T	4277.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	72532037	rs2253793	C	T	7136.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	72532238	rs2253801	T	C	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	72533910	rs7077672	C	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	72533952	rs141983416	C	T	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	72535007	rs2254174	C	T	12421.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr10	72536288	rs7897034	T	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	72536779	rs2254422	A	C	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	72537450	rs2254445	T	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	72604263	rs12770335	G	T	6014.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	72619205	rs827255	C	T	9631.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr10	72631626	rs865832	C	T	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	72648086	rs827239	A	G	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	72648134	rs827238	A	G	6620.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	72813306	rs10762420	G	A	7780.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:1,309:1.00:310
chr10	72813361	rs10740361	A	G	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr10	73039860	rs4415677	C	T	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	73044382	rs10823716	T	A	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	73044413	rs10762434	G	C	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	73044580	rs12770025	G	A	24127.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.361;ClippingRankSum=0.000;DB;DP=933;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.37;ReadPosRankSum=1.703;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,914:1.00:915
chr10	73044674	rs10999762	G	A	24560.77	.	AC=2;AF=1.00;AN=2;DB;DP=943;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,935:1.00:935
chr10	73044924	rs7350453	A	G	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	73044930	rs7350455	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.30;SOR=4.103;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	73044954	rs6480503	A	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	73047593	rs7074280	G	A	13227.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr10	73050983	rs3740462	C	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	73078862	rs7924115	C	G	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	73078876	rs72542477	C	G	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.45;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	73079147	rs17525188	G	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	73082563	rs2277257	A	G	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr10	73103904	rs41281300	C	G	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	73104056	rs2243540	A	G	16618.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr10	73111258	rs780667	G	T	4598.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	73111408	rs780668	C	T	17824.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,669:1.00:669
chr10	73115941	rs2252997	TG	CA	13703.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr10	73121645	rs2487067	C	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	73121913	rs2487068	A	G	24595.77	.	AC=2;AF=1.00;AN=2;DB;DP=981;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,967:1.00:967
chr10	73121945	rs1084004	T	C	23481.77	.	AC=2;AF=1.00;AN=2;DB;DP=892;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,884:1.00:884
chr10	73122468	rs780680	G	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	73269714	rs2297953	T	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	73270906	rs3802720	T	C	14795.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.709;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=0.472;SOR=0.335;set=HC	GT:AD:AF:DP	1/1:1,580:1.00:581
chr10	73270982	rs3802719	G	A	17114.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr10	73270995	rs3802718	A	G	15066.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr10	73330467	rs146681389	CTG	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.550;QD=0.95;ReadPosRankSum=0.124;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:37,6:0.14:43
chr10	73377314	rs7903772	C	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	73403490	rs10823810	A	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	73406636	rs11598249	C	T	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	73439066	rs3802717	A	T	10674.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr10	73439101	rs1227042	T	C	22741.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,859:1.00:859
chr10	73455201	rs3752752	T	C	24065.77	.	AC=2;AF=1.00;AN=2;DB;DP=945;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,940:1.00:940
chr10	73455273	rs3752751	T	C	11417.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr10	73455308	rs3752750	T	C	6943.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr10	73492079	rs1227065	A	G	18415.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,718:1.00:718
chr10	73492300	rs41281320	G	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	73494159	rs1227062	T	A	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	73494229	rs1227061	T	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	73499561	rs10762474	C	G	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr10	73501374	rs1227052	C	T	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	73501533	.	T	C	33021.77	.	AC=2;AF=1.00;AN=2;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,782:1.00:782
chr10	73501556	rs1227051	G	A	31918.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	1/1:1,741:1.00:742
chr10	73515103	rs3747858	G	T	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	73520391	rs10999987	C	T	413.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.99;ReadPosRankSum=0.597;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr10	73520632	rs3747869	A	C	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	73521371	rs3747867	C	T	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	73537388	rs7917781	T	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	73537614	rs17712523	G	A	16481.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr10	73538896	rs6480555	T	A	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	73545236	rs3802709	G	T	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr10	73550117	rs11592462	C	G	16902.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,648:1.00:648
chr10	73571581	rs140848302	C	CCT	6962.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	73578704	rs142614739	AAGTCTC	A	1530.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	73583520	rs2249814	G	C	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.775;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	73583573	rs56911723	C	CA	2656.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.656;QD=12.24;ReadPosRankSum=-1.058;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:47,170:0.78:217
chr10	73765773	rs11000129	T	G	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	73767859	rs3740129	G	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	73822507	rs1530803	C	T	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	73822957	rs1530802	G	A	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	73823019	rs1668172	A	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	73824170	rs2242250	G	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	73824181	rs2242251	C	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	73824203	rs2242252	T	C	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	73827292	rs1530804	A	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	73832859	rs896074	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	73846826	rs1245546	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	73848105	rs10713496	TG	T	578.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	73856984	rs3312	A	G	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	73862032	rs1668154	C	T	5835.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr10	73964004	rs4237336	C	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	73970451	rs7069703	G	T	9233.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr10	74100642	rs9416018	G	A	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	74139200	rs11000276	T	G	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	74182917	rs10823922	T	C	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	74183251	rs7069357	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	74234817	rs915432	T	C	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	74235771	rs11000322	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	74268031	rs3793927	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	74293584	rs10509343	A	T	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	74293601	rs11818304	T	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	74690437	rs368917423	CT	C	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=5.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=2.757;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:66,54:0.45:120
chr10	74695287	rs2461917	T	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	74714177	rs3829126	G	T	5356.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	74769729	.	C	CT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.815;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr10	74881951	rs34284214	G	A	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	75140011	.	A	AT	42	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=10;HapScore=2;MGOF=10;MMLQ=27;MQ=60.0;NF=1;NR=3;PP=42;QD=13.5;SC=GTTCTACTAAATTTTTTTTTT;SbPval=0.49;Source=Platypus;TC=19;TCF=3;TCR=16;TR=4;WE=75140019;WS=75140001;set=Platypus	GT:AD:AF:DP	0/1:15,4:0.21:19
chr10	75283637	rs377326169	AT	A	72.25	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	75283642	rs371483348	TTA	T	72.25	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	75302488	rs368216335	CA	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.104;QD=2.91;ReadPosRankSum=-0.066;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr10	75331168	.	G	A	6999.77	.	AC=2;AF=1.00;AN=2;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	75490217	rs11814282	T	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	75519322	rs10740418	T	C	8389.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	75525999	rs3849969	A	G	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	75532848	rs145929404	GCCAGGACTCCAGGTGTCCAGGACTCCAGGTGT	G	1571.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	75545251	rs12256103	A	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=4.223;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	75558867	rs2271271	G	A	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	75559662	rs141230821	C	CTCTA	4614.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	75562161	rs13013	C	A	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	75607696	rs67135801	CA	C	2004.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	75612881	rs2250140	T	C	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	75620757	rs2664282	T	C	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	75632760	rs2675671	C	T	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr10	75671875	rs2227581	G	A	13624.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr10	75672607	rs61567551	C	CA	1152.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.775;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=-1.019;SOR=0.455;set=HC	GT:AD:AF:DP	1/1:10,66:0.87:76
chr10	75673101	rs2227564	T	C	11681.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr10	75673731	rs2227566	C	T	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	75674740	rs2227571	C	T	6248.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	75863750	rs2270552	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	75865065	rs767809	G	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	75866929	rs2131957	C	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	75871735	rs2131956	C	G	10789.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,417:1.00:417
chr10	75874192	rs138018528	T	TGC	594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.105;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.589;QD=18.02;ReadPosRankSum=0.258;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:15,18:0.55:33
chr10	75889760	rs35456205	GA	G	1989.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:7,109:0.94:116
chr10	75896601	rs10762576	A	C	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	75936611	rs10824095	C	T	7879.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr10	76158177	rs2126763	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	76349020	.	C	CT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.778;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr10	76429870	rs10740443	T	C	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:2,217:0.99:219
chr10	76971076	rs45451793	C	T	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.376;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	77162966	rs72807459	C	T	6275.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	78649399	rs2288840	C	T	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	78729669	rs2288837	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	78778734	rs16934182	G	A	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	78782876	rs7078109	T	C	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	78844579	rs34592624	G	GA	1010.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=-0.194;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:9,56:0.86:65
chr10	78868165	rs375194108	CAAAA	CA,C	6065.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.83;QD=32.79;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:3,140,42:0.76,0.23:185
chr10	78944590	rs1131824	G	A	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	78977190	rs16934368	A	C	8552.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr10	79163884	rs11002158	T	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	79397495	.	T	TGCTGCC	2346.73	.	AC=2;AF=1.00;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	79552092	rs2165046	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	79552151	rs1058202	T	C	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	79553673	rs2812425	T	C	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr10	79565655	rs2289311	G	A	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	79566480	rs58116353	CT	C	4176.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	79566632	rs1058198	G	A	15104.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,594:1.00:594
chr10	79571108	rs2289309	C	T	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	79571592	.	G	T	317.77	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	79575879	rs1248638	A	G	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	79577408	rs10824577	G	C	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	79579047	rs1248635	A	G	8564.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr10	79579251	rs2289308	G	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	79584178	rs1248629	G	C	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	79589904	rs55854323	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	79590510	rs77492655	C	G	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	79590685	rs10824579	C	T	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	79590726	rs1248663	C	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	79595417	rs1248661	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	79614189	rs1248692	A	G	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	79616605	rs1248696	T	C	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	79628875	rs1248655	A	G	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	79777204	.	C	CA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.297;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr10	79779150	rs1863898	G	A	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	79793688	rs3740253	C	T	18902.77	.	AC=2;AF=1.00;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	1/1:0,729:1.00:729
chr10	80288406	rs1865706	T	G	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	80310465	rs2670191	T	C	4595.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	80310636	rs7090749	G	A	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	80762010	.	GA	G	462.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.713;SOR=0.409;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr10	80762022	rs72249308	GGAAA	G	865.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.23;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	80763534	rs10762829	A	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	81036869	rs141066948	T	TG	806.75	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chr10	81036921	rs77524869	T	C	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	81037112	rs79407124	A	G	12508.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,482:1.00:482
chr10	81037229	rs1250539	G	A	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	81061789	rs141150173	G	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	81108956	rs2233718	A	G	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	81316937	rs17879546	C	T	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr10	81318545	rs2217231	A	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	81318621	rs17884396	C	T	10336.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr10	81318930	rs1250943	C	G	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.57;QD=26.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	81319423	rs1975008	C	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.82;QD=25.60;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	81319458	rs17883613	C	T	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.17;QD=25.36;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	81319483	rs1975007	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.61;QD=25.56;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	81342369	rs34032311	G	T	4496.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.036;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.88;MQRankSum=-1.177;QD=24.84;ReadPosRankSum=1.181;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,180:0.99:181
chr10	81343036	rs3855862	G	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.78;QD=25.91;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	81371341	rs3997772	G	T	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	81371421	rs2678553	A	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.31;QD=27.99;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	81371953	rs1914663	C	T	442.10	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr10	81372081	rs1136451	A	G	8231.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=25.17;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr10	81373777	rs4253527	C	T	12580.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.598;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.54;MQRankSum=-0.742;QD=25.99;ReadPosRankSum=1.107;SOR=0.310;set=HC	GT:AD:AF:DP	1/1:1,483:1.00:484
chr10	81374651	rs1250991	C	T	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	81680976	rs2819107	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	81681454	rs2257414	A	G	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	81682527	rs7919775	A	G	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	81682645	rs1054053	A	G	9698.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:1,383:1.00:384
chr10	81697818	rs1051246	A	G	11727.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:2,445:1.00:447
chr10	81698097	rs2819098	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	81701722	rs2243639	T	C	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	81904638	rs2819874	G	A	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	81915790	rs2789687	T	C	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	81923205	rs2236558	T	G	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	81925796	.	GCGCACA	G,GCA	2763.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=158;set=Intersection	GT:AF:DP	1/2:0.25,0.64:140
chr10	81932790	rs2236556	T	C	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	81995058	rs2678622	G	A	6098.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.44;MQRankSum=-1.036;QD=24.49;ReadPosRankSum=1.801;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:2,247:0.99:249
chr10	82033594	rs2993763	G	A	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	82033683	rs4933327	G	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	82034262	rs2994388	G	A	18992.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,747:1.00:747
chr10	82034842	rs10887711	A	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	82034854	rs10788546	T	C	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	82040052	rs1143694	A	G	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	82040162	rs71481596	C	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	82040346	rs2282367	A	G	14796.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,578:1.00:578
chr10	82040602	rs71481597	A	G	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr10	82045354	rs10887721	G	C	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	82049251	.	T	TTTTTTC	627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=64.46;MQRankSum=1.367;QD=11.01;ReadPosRankSum=-0.530;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:21,36:0.63:57
chr10	82126600	rs1047951	G	A	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	82182296	rs1870142	G	A	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	82182405	.	C	CT	160	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=6;HapScore=2;MGOF=31;MMLQ=22;MQ=61.34;NF=0;NR=6;PP=160;QD=37.3076267452;SC=CTAGGTATTTCTTTGATTTGT;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=6;WE=82182413;WS=82182395;set=Platypus	GT:AD:AF:DP	1/1:4,6:0.60:10
chr10	82191700	rs17617713	G	A	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	82249108	rs7902355	C	T	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	82276061	rs72821609	C	T	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr10	82329737	rs72805710	A	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	82329822	rs72805711	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	84739018	rs78638961	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	85903888	rs10887241	G	A	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	85908688	rs7069909	G	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	85936342	rs73315862	C	T	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	85944313	rs12250279	A	T	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.36;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	85944322	rs35568118	T	A	4946.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	85954609	rs377213415	C	T	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	85957681	rs11200915	A	C	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	85958658	rs369464330	AAG	A	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.877;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr10	85993836	rs4933986	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr10	86001255	rs3841414	G	GGCCCAGCAA	993.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	86004736	rs2279228	A	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	86004865	rs11200938	C	T	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	86004873	rs2279227	T	C	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	86012713	rs1042454	C	T	5690.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr10	86012831	rs11200942	C	T	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	86018460	rs3526	A	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	86131059	rs3814205	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	86131606	rs373732128	G	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-1.944;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:339,76:0.18:415
chr10	86185654	rs1336202	T	G	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	86198220	rs147451516	AATTGT	A	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	86198533	rs34484957	T	A	1330.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr10	86223795	rs11598369	G	A	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	86237505	rs11594873	G	A	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	86259580	rs11201071	T	G	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	86273249	rs11557865	T	C	9893.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,394:1.00:394
chr10	87361961	rs1054979	G	A	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr10	88024443	rs2607863	T	C	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	88126056	rs11202000	T	G	12433.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,498:1.00:498
chr10	88203068	rs7094132	T	C	7685.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr10	88203208	rs7094269	T	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	88213604	rs6586011	A	G	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	88220866	rs7922658	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	88230874	rs2288362	G	A	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr10	88256943	rs4934215	C	T	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	88277457	rs10887621	C	T	10443.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	88281344	rs2289738	C	G	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	88281344	.	CCA	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=49;NR=24;PP=2947;QD=20;SC=CCGGCCGGGCCCAGGCCTAGC;SbPval=0.54;Source=Platypus;TC=76;TCF=51;TCR=25;TR=73;WE=88281354;WS=88281334;set=Platypus	GT:AD:AF:DP	1/1:3,73:0.96:76
chr10	88281346	rs4934218	A	G	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=1.200;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	88414570	rs11202106	G	A	6814.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	88417724	rs10788521	C	T	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	88420871	rs61612272	C	CA	375.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr10	88422116	rs1079610	C	T	12947.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr10	88422151	rs3740337	C	A	12185.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr10	88426350	rs17425484	C	T	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	88428335	rs2803558	T	C	6901.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chr10	88439005	rs4468255	G	A	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	88445385	rs3740345	G	C	9011.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.891;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr10	88458996	rs201580455	TTC	T	864.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:88,65:0.42:153
chr10	88486102	rs34647099	CT	C	2829.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.86;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	88492235	rs7916248	A	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	88492253	rs71487280	CTGTTTGTT	C	2867.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	88492362	rs7899324	G	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	88492409	rs7899337	G	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	88702350	rs4934281	G	C	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	88702390	rs10887673	G	A	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	88717140	rs4244973	T	A	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	88730106	rs2279602	C	T	23708.77	.	AC=2;AF=1.00;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	1/1:0,896:1.00:896
chr10	88730177	rs2279601	A	G	23854.77	.	AC=2;AF=1.00;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	1/1:0,915:1.00:915
chr10	88730312	rs4869	T	C	17100.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,661:1.00:661
chr10	88768253	rs2641563	A	G	19785.77	.	AC=2;AF=1.00;AN=2;DB;DP=779;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=25.40;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,779:1.00:779
chr10	88768657	rs1745901	C	T	12706.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr10	88817578	rs35186250	GA	G	136.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=1.251;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr10	88819133	rs2296062	T	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	88828050	rs2296061	C	T	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	88835628	rs11202318	G	A	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	88939962	rs7081609	T	C	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.67;QD=25.30;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	88946973	rs187337699	G	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	88964698	rs149975014	G	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=-6.521;QD=3.91;ReadPosRankSum=1.359;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:63,26:0.29:89
chr10	89267957	rs3843597	C	T	1824.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.233;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.33;ReadPosRankSum=-0.737;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,74:0.99:75
chr10	89269267	rs3843598	G	A	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	89420898	.	T	TA	31.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr10	89469083	.	C	CAT	127	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=27;MQ=59.65;NF=0;NR=7;PP=127;QD=19.1428571429;SC=ATGTCATGTTCATATATATAT;SbPval=1.0;Source=Platypus;TC=29;TCF=0;TCR=29;TR=7;WE=89469092;WS=89469073;set=Platypus	GT:AD:AF:DP	0/1:22,7:0.24:29
chr10	89527300	rs1819163	A	G	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	89552283	rs11202557	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	89720633	.	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=2.836;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.594;QD=1.51;ReadPosRankSum=-2.563;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr10	90362307	rs11343654	CT	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.921;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:27,24:0.47:51
chr10	90524335	rs41284088	C	T	9024.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr10	90574222	rs303524	C	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	90588154	rs1977537	A	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.91;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	90588161	rs1029025	C	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	90674434	.	AAT	A	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=1.845;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr10	90982081	rs6586175	A	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.99;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	90983629	rs1556478	C	T	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	90984787	rs2297473	T	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	90984990	rs2297472	G	A	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	91007360	rs1051338	T	G	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	91007470	rs2250781	C	A	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	91065949	rs17468739	A	C	6937.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr10	91066075	rs2070845	A	G	9446.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr10	91066460	rs954439	T	A	6260.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	91066769	rs1727	C	A	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	91092189	rs12255504	C	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	91099630	rs3780878	T	C	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	91099943	rs10749607	C	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	91137826	rs304504	T	C	8237.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr10	91143529	rs304494	T	A	6806.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	91162497	rs303211	A	G	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	91172663	rs304439	C	G	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	91178000	rs304448	C	T	12690.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr10	91222287	rs3740030	A	C	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	91352966	rs2296616	G	A	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	92503619	rs3740048	T	C	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	92678748	.	A	AAT	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.328;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=7.963;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.810;QD=2.75;ReadPosRankSum=-1.286;SOR=1.601;set=HC	GT:AD:AF:DP	0/1:103,23:0.18:126
chr10	93170250	rs7081569	C	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	93170365	rs71025355	CG	C	1299.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.10;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	93577141	rs1539041	T	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	93579117	.	CT	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.799;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr10	93668110	rs1107947	T	A	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	93702405	rs3814640	C	T	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	93702443	rs3814639	G	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	93713405	rs12571564	T	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	93713758	rs11186768	T	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	93716899	rs7894570	G	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	93719495	.	GTGTATATA	G,GTA	344.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=61;set=Intersection	GT:AF:DP	0/1:0.45:42
chr10	93720011	rs183136090	C	A	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.85;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	93767797	rs1711842	G	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	93771192	rs2676802	T	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	93776240	rs11400019	C	CT	182.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;QD=18.27;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	93784489	.	G	GTTTTTTTGTTT	674.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=44.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	93788516	rs10622641	A	ATT	787.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.20;ReadPosRankSum=0.266;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:4,35:0.90:39
chr10	93812334	rs1711841	G	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	93841227	rs2676811	A	G	7591.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr10	93851714	rs1229578	T	C	7205.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr10	94407865	.	C	CA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.119;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr10	94490174	rs2488075	T	C	5585.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=25.39;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	94507612	rs2488066	A	G	16939.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=-0.209;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:2,672:1.00:674
chr10	94511683	rs2096177	G	T	11318.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr10	94594416	rs11408607	A	AT	1477.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.833;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.445;QD=15.56;ReadPosRankSum=1.696;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:12,83:0.87:95
chr10	94594565	rs2490741	G	A	7394.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr10	94695555	rs1326330	G	A	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	94695617	rs1326331	C	T	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	94700460	.	CT	C	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.634;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr10	94816807	rs60582805	G	GA	4195.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	94820860	rs1538648	A	G	8536.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr10	94822686	rs55843714	C	T	10062.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr10	94822895	rs12263200	G	T	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	95070037	rs2761286	A	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	95070080	rs2797581	C	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	95070526	rs787661	G	A	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	95072906	rs787666	T	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	95073046	rs787667	A	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	95083204	rs148815470	ATTTC	A	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.16;QD=40.34;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	95095598	rs117735948	G	A	11850.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	95095617	rs113828380	T	C	13714.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.22;SOR=1.268;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr10	95095792	rs79155397	A	G	7014.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	95097537	rs1614065	T	C	8571.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr10	95098144	rs10786089	T	C	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	95099836	rs200315367	C	CA	461.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	95099849	rs2761329	G	A	804.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=26.82;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	95107324	.	A	AAAAAAAG	548.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=61.15;MQRankSum=-0.000;QD=39.20;ReadPosRankSum=2.189;SOR=3.236;set=HC	GT:AD:AF:DP	1/1:3,11:0.79:14
chr10	95111005	rs35669278	T	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	95113452	rs41290194	C	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	95119576	rs41290196	C	A	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	95123618	rs10882221	G	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	95132905	rs787647	C	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	95139499	rs77863356	T	C	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	95139526	rs10882229	A	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	95159025	rs701862	T	G	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	95159115	rs78464761	A	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	95159335	rs77041759	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr10	95162147	rs41290204	G	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	95162525	rs3841653	TC	T	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	95162660	rs41290206	T	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	95164040	rs788088	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	95216590	rs17481945	C	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	95237861	rs2096181	C	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	95237899	rs58873758	ATAT	A	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	95237963	rs3938769	A	G	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	95238050	rs6583893	C	T	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	95241999	rs947597	A	C	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	95262981	rs7080916	A	G	6980.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr10	95276673	rs4919224	G	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	95278829	rs2280605	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	95278841	rs2280606	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	95279506	rs2293277	A	T	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	95279653	rs7068719	A	G	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	95287643	rs34668129	G	GA	655.87	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr10	95381773	rs701865	T	A	11681.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr10	95386740	rs2785138	C	A	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	95388914	rs2857300	A	G	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	95389041	rs714550	G	A	8490.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr10	95389083	rs714549	A	G	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.060;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	95389124	rs714551	G	A	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	95394455	rs1856563	T	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	95395364	rs3737228	C	G	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr10	95400510	rs12780304	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	95405665	rs3831275	CTA	C	1716.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	95405814	rs1409332	C	A	7190.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr10	95422245	rs10882298	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	95432968	rs1572773	T	C	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	95433124	rs1326214	A	G	10311.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr10	95443688	rs8181435	C	G	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	95444931	rs767701	T	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	95454449	rs11187593	C	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.46;QD=28.80;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	95454681	rs2275438	G	C	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr10	95454768	rs3215997	TA	T	178.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	95458141	rs11187597	A	G	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr10	95459698	rs2275441	G	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	95459817	rs726817	C	T	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	95549836	rs368174638	C	CTT	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=1.427;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,21:0.84:25
chr10	95552653	rs1111820	T	C	10253.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	95658258	rs11187724	C	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	95993979	rs61751496	G	A	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	96014622	rs10786156	C	G	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	96025491	rs3740360	A	C	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	96039597	rs2274224	G	C	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	96043732	rs7084339	A	G	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	96053239	rs3740365	T	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.190;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	96064168	rs3818432	C	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	96066341	rs2274223	A	G	10312.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr10	96068480	rs11187850	A	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	96201839	rs10584329	CT	C	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=2.113;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:41,23:0.36:64
chr10	96271298	rs2860761	A	C	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	96343623	rs962234	T	C	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	96348254	rs11188036	G	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	96466824	rs7904929	C	T	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	96954511	rs681838	T	A	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	97106165	rs726176	T	C	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	97110879	rs6583995	C	T	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	97114560	rs2274632	C	T	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	97114880	rs57853202	A	AC	115.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.17;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	97127264	rs6583997	T	C	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	97127462	rs6583998	C	A	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	97127577	rs7074224	C	T	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	97141523	rs2274490	G	A	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	97146882	rs149449849	G	GA	869.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	97156908	rs17110707	T	C	8329.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr10	97165811	rs3818540	G	A	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	97166103	rs2274488	T	C	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	97174164	rs3818539	A	G	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	97192324	rs943542	A	G	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	97192452	rs732101	A	C	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	97366746	rs7099284	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	97369939	rs10882640	C	T	6777.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	97370989	rs2296691	T	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	97371317	rs11188399	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	97371327	rs11188400	C	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.93;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	97373966	rs2296692	A	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	97381077	.	C	CTT	105.80	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	97392969	rs3750701	G	A	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	97392993	rs3750700	T	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	97397227	rs2275273	T	C	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	97397344	rs11188411	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	97412921	rs9787589	T	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	97442995	rs17461546	A	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	97471837	.	A	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.206;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=15.703;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-8.092;QD=0.59;ReadPosRankSum=0.781;SOR=3.911;set=HC	GT:AD:AF:DP	0/1:61,6:0.09:67
chr10	97471843	.	A	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.518;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=12.352;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-7.776;QD=0.69;ReadPosRankSum=1.179;SOR=3.545;set=HC	GT:AD:AF:DP	0/1:57,5:0.08:62
chr10	97471868	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.822;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=5.562;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-6.195;QD=0.79;ReadPosRankSum=0.474;SOR=2.655;set=HC	GT:AD:AF:DP	0/1:36,4:0.10:40
chr10	97471873	.	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.781;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=5.581;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-6.114;QD=0.89;ReadPosRankSum=0.301;SOR=2.535;set=HC	GT:AD:AF:DP	0/1:35,4:0.10:39
chr10	97471881	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.572;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-5.217;QD=1.82;ReadPosRankSum=-0.108;SOR=2.041;set=HC	GT:AD:AF:DP	0/1:26,3:0.10:29
chr10	97602091	rs3181131	T	C	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	97605057	rs7074403	C	G	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	97607165	rs3181122	G	A	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	97687184	rs56365500	A	G	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	97698370	rs4918979	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	97748040	rs7900838	G	A	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	97769856	rs4145209	G	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	97772253	rs3748224	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	97772496	rs10748652	T	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	97778853	rs1414922	C	T	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.37;QD=20.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	97779219	rs1414921	G	A	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	97791761	rs1336459	A	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	97816420	rs7099399	G	A	12173.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.10;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr10	97920099	rs67530050	T	TC	13125.73	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr10	97964154	rs10748665	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	97964157	rs2242137	A	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	97975167	rs3835127	GTA	G	779.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;QD=33.90;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	97987378	rs34233512	G	A	8918.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	97990583	rs727852	A	G	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr10	98006857	rs2168732	A	T	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.78;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	98007933	rs9663433	G	A	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.40;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	98007943	rs9664029	T	A	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	98078127	rs7081385	C	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	98078239	rs6584066	A	G	7479.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	98082517	rs7097016	T	G	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.89;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	98084231	rs2181320	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	98088387	rs10882773	A	C	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	98095794	rs10736102	T	C	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	98116076	rs2861575	C	T	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	98144312	rs7085022	G	A	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	98240035	rs2281801	A	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	98240382	rs243	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	98287094	rs10786298	T	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	98287261	rs3789957	G	C	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	98311190	rs10882816	G	T	2378.89	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:10,104:0.91:114
chr10	98312891	rs10736113	C	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	98319236	rs10128106	G	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	98319367	rs3818389	A	T	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	98319503	rs3818390	A	T	654.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	98321928	rs7094142	A	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	98346411	rs11188836	A	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	98380074	rs78780339	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	98380277	rs3748234	C	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	98380363	rs7910630	A	G	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	98383329	rs4917745	G	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	98386433	rs1469847	C	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	98386558	rs4344416	G	A	10136.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr10	98392872	rs6584092	A	C	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	98408714	rs912483	A	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	98416533	rs3748231	C	T	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	98469693	rs17112076	C	T	7149.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr10	98762051	rs3740528	T	G	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:1,269:1.00:270
chr10	98778477	rs3740527	C	T	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr10	98778574	rs113945804	C	CTTCA	652.27	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:1,17:0.94:18
chr10	98790674	rs41284248	G	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	98797351	rs2805586	A	G	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	98797360	rs75066754	C	T	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	98808866	rs2805588	C	G	10016.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr10	98817687	rs7914872	A	G	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr10	98825940	rs1106375	G	A	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	98923361	rs2636772	T	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	98979111	rs10714841	AT	A	44.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	98988759	rs1468069	A	C	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	98989454	rs2297987	A	G	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	99003613	rs793528	A	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	99019144	rs3740522	C	T	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr10	99019177	rs2253301	A	G	7651.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=-0.694;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:2,305:0.99:307
chr10	99025611	rs10882884	T	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	99079023	rs11189127	G	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	99117120	rs10882905	G	A	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	99125949	rs2275580	C	T	10286.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr10	99130161	rs149757559	CCCCA	C	16205.73	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr10	99160965	rs2275091	A	G	14565.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:1,561:1.00:562
chr10	99205686	rs2297666	A	G	11865.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr10	99220707	rs3740526	C	T	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr10	99225738	rs2236575	T	A	9968.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr10	99240758	rs2275586	G	C	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	99337473	rs10786357	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	99337572	rs7094973	G	A	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	99376843	rs4919121	A	C	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	99503021	rs72835978	C	T	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	99504630	rs10882993	G	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	99504725	rs10882994	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	99507869	rs11189352	T	C	6637.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr10	99509457	rs946778	T	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	99509969	rs3750615	T	C	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	99510068	rs3750614	G	T	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr10	99512472	rs1538723	T	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	99514645	rs7922907	A	G	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	99516955	rs10882995	G	A	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	99517355	rs3750612	A	G	8749.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr10	99518810	rs1981238	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	99518874	rs10882996	G	A	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	99518901	rs12412543	G	C	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	99519097	rs1981237	A	G	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	99531571	rs11815012	C	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	99638216	.	TG	T	37	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=8;HapScore=2;MGOF=54;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=37;QD=12.75;SC=GCTTTTTTTTTGTTGAATATG;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=4;WE=99638224;WS=99638212;set=Platypus	GT:AD:AF:DP	0/1:2,4:0.67:6
chr10	99640255	rs10883009	G	A	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	99655606	rs2297938	G	C	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	99682981	rs894375	T	C	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	99991408	rs1952061	A	G	2784.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	100003785	rs1359508	T	C	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	100011970	rs3750598	G	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	100012011	rs10748722	C	T	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	100013244	rs3750599	A	C	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	100020880	rs33995374	C	T	8603.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr10	100021983	rs746257	G	A	7680.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr10	100022446	rs10736125	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	100022917	rs112780536	A	ATG	592.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.20;ReadPosRankSum=-1.282;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr10	100183774	rs10883093	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	100184062	rs2296433	CC	AG	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	100189138	rs1061135	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	100193679	rs1886728	G	C	19958.77	.	AC=2;AF=1.00;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	1/1:0,775:1.00:775
chr10	100250019	rs59184373	GACACACACACAC	GAC,G	1883.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=60;set=Intersection	GT:AF:DP	1/1:1.00:46
chr10	100481315	rs147098746	A	AAAAT	181.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	100991971	.	TACAC	T	1905.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.96;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	100991974	.	A	G	37.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.463;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr10	100991976	.	A	G	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.52;ReadPosRankSum=0.011;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:15,33:0.69:48
chr10	100991978	.	A	G	68.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.841;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.381;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:44,8:0.15:52
chr10	100991979	.	C	T	883.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.027;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.00;ReadPosRankSum=-0.060;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:16,36:0.69:52
chr10	100991981	.	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.294;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:47,10:0.18:57
chr10	101090428	rs2862600	T	G	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr10	101120787	rs3763792	C	T	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	101137063	rs3829211	G	A	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	101150256	rs3793931	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	101295274	.	GGGC	G	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-1.813;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:80,9:0.10:89
chr10	101372411	rs880568	T	C	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	101420283	.	GCACACACACACA	GCACA,GCA,G	1316.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=46;set=Intersection	GT:AF:DP	2/1:0.44,0.56:32
chr10	101420318	rs28529459	C	G	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=45.66;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	101420324	rs11190227	T	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=49.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	101439252	rs3740079	G	A	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	101462193	rs10748790	C	T	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	101473218	rs2231687	A	G	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	101480604	rs3832650	C	CAG	1675.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	101489216	rs145861614	CAAA	C	849.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.923;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=22.97;ReadPosRankSum=1.636;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr10	101544447	rs927344	A	T	8125.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr10	101551902	rs2756108	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	101571528	rs3740074	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	101576960	rs3740073	T	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	101591944	rs4148396	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	101823543	rs4462272	T	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	101825160	rs3829161	C	G	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	101841153	rs10883439	A	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	101912064	rs2862954	T	C	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr10	101912194	rs1408579	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	101914544	rs41290524	T	C	7993.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	101953705	rs11597086	A	C	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	101967212	rs7909855	C	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	101977883	rs2230804	C	T	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	101980459	rs986266	A	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	102006429	rs4919438	T	C	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	102016268	rs2270961	G	A	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	102027407	rs12784396	C	T	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	102055750	rs117721667	C	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	102056745	rs2278842	C	T	6735.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	102059329	rs2242050	G	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	102088906	rs3829159	C	T	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	102104600	.	A	AT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=3.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.978;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr10	102107251	rs1054411	C	G	6637.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=25.05;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr10	102116208	rs111712956	ATCCCC	A	10059.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.84;QD=43.93;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	102116311	rs2234970	A	C	10695.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr10	102222825	rs3793772	T	C	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	102222957	rs3793771	G	C	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	102238953	rs11190578	C	T	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	102239829	rs2295770	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	102241998	rs17113137	G	C	8069.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	102247408	rs2298075	C	A	6199.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=0.678;SOR=0.262;set=HC	GT:AD:AF:DP	1/1:1,241:1.00:242
chr10	102247526	rs2298074	G	C	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	102248884	rs3750720	C	T	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	102248950	rs3750719	C	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	102258439	rs9420792	C	T	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	102265183	rs2295772	G	A	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	102265815	rs2295773	A	G	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	102265847	rs2295774	A	C	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	102266316	rs3750626	C	T	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	102269085	rs3793706	C	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	102269206	rs3763695	A	G	7430.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr10	102275780	rs3750630	A	G	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	102289078	rs1800662	C	A	12348.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.684;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=-1.062;SOR=0.312;set=HC	GT:AD:AF:DP	1/1:1,484:1.00:485
chr10	102289743	rs10883506	C	G	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr10	102295629	rs2295776	G	T	7908.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,313:1.00:314
chr10	102295658	rs11190600	T	G,TG	6020.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=281;set=Intersection	GT:AF:DP	1/2:0.79,0.20:256
chr10	102296061	rs2295779	A	G	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	102296461	rs10883509	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	102307671	rs7073586	A	G	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	102673063	rs3802725	G	T	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	102684380	rs10883563	C	A	9517.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr10	102689217	rs2273654	T	C	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	102689504	rs10786614	G	A	147.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	102716318	.	C	CT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.841;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr10	102738766	rs118166648	T	C	7612.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr10	102744331	rs11591349	A	T	7379.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	102746231	rs7184	C	T	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	102762256	rs752974	C	T	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	102770082	rs807023	T	G	13893.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr10	102770293	rs200896335	T	TGCTGCG	3304.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.22;MQRankSum=0.911;QD=25.62;ReadPosRankSum=1.516;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:2,127:0.98:129
chr10	102770327	rs807022	A	G	3566.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.043;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.220;QD=26.82;ReadPosRankSum=0.495;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,132:0.99:133
chr10	102775221	rs71929129	ATGTGTG	A,ATG	1869.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/2:0.21,0.79:47
chr10	102792295	rs807014	G	A	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	102798346	rs807049	T	C	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	102824349	rs807037	G	C	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	102824760	rs12359843	G	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	102849455	rs12356580	A	G	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	102997581	rs678741	G	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	103221870	rs5787432	CAGG	C	4354.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=43.99;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	103454357	.	GCCT	G	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=4.307;QD=1.01;ReadPosRankSum=-1.213;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:230,25:0.10:255
chr10	103530438	rs3218238	C	T	7012.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	103542959	rs935445	CC	GG	38942.77	.	AC=2;AF=1.00;AN=2;DB;DP=874;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,863:1.00:863
chr10	103567665	rs372242564	GA	G	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.420;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:85,34:0.29:119
chr10	103573222	rs11191118	C	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	103717493	rs376923161	T	TA	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.810;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.073;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=1.669;QD=6.79;ReadPosRankSum=-0.036;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:20,28:0.58:48
chr10	103904763	rs11357964	TC	T	5922.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=27.94;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	103908080	rs3740405	G	A	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	104110843	.	CA	C	101.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.981;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr10	104120731	.	C	CA	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.688;QD=4.97;ReadPosRankSum=-0.426;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:52,50:0.49:102
chr10	104121807	.	CTT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.912;QD=2.81;ReadPosRankSum=-0.363;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr10	104122842	rs1890060	A	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	104126341	.	CT	C	153.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-1.995;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr10	104128954	rs7902882	T	A	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	104136469	rs2180707	T	C	10927.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr10	104156390	rs138364110	G	GT	4376.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	104157727	rs4919632	C	T	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	104158933	rs3740418	C	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	104158972	rs11331332	CA	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.179;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:61,31:0.34:92
chr10	104159196	rs4919633	A	G	3501.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=-0.918;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:2,137:0.99:139
chr10	104160434	rs4919634	A	G	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	104161967	rs7077329	T	C	15389.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,591:1.00:591
chr10	104163489	rs7068416	G	A	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	104163569	rs11191283	G	A	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	104179219	rs56384670	C	A	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	104184213	rs41287462	G	A	11644.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr10	104184953	rs11597439	C	G	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	104184981	rs11593146	A	G	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	104214080	rs148334455	CT	C	2182.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.492;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.293;QD=16.79;ReadPosRankSum=0.390;SOR=0.367;set=HC	GT:AD:AF:DP	1/1:8,122:0.94:130
chr10	104231234	rs913028	T	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	104235807	rs34731010	TGG	T	1934.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	104235809	.	G	GTTTT	1736.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	104240498	rs12162	A	G	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	104240974	rs2296578	C	G	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	104242886	rs2296581	G	A	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	104243883	rs7079810	C	T	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	104244139	rs2296582	G	T	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr10	104245549	rs2296585	C	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	104245575	rs2296586	G	A	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	104245588	rs2296587	G	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	104248087	rs2296588	T	C	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	104248106	rs2296589	T	A	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	104250209	rs111446950	CT	C	2146.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	104268877	rs2281879	G	C	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	104356822	rs10786690	A	G	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	104375258	rs2001389	G	A	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	104378750	rs10786698	G	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.49;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	104389932	rs4917980	T	G	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	104415720	rs4274160	T	C	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	104445545	rs3832710	AG	A	708.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	104449836	rs61869211	A	G	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	104459079	rs59504153	TAA	T	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	104473813	rs2248684	C	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	104474107	rs2248679	G	A	9736.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr10	104486304	rs2244647	G	C	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	104486974	rs2244524	C	T	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	104487072	rs2244518	G	T	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	104489011	rs2244254	G	C	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr10	104492707	rs2778037	G	C	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	104536365	rs2254563	C	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	104572276	rs284861	A	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	104572963	rs284860	T	C	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:3,329:0.99:332
chr10	104860395	rs2863727	T	G	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	105108810	.	C	CT	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.802;QD=4.59;ReadPosRankSum=1.978;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:67,46:0.41:113
chr10	105128134	rs10883859	T	G	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	105144986	rs7069667	A	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	105165615	rs7919031	G	A	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	105176179	rs7894407	T	C	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	105214932	rs729211	T	C	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	105215016	rs2986016	A	G	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr10	105218252	rs2986017	A	G	21910.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr10	105218254	rs4918016	C	T	21910.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,484:1.00:484
chr10	105218359	rs2986018	T	C	14617.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr10	105233110	rs2986035	C	T	11147.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr10	105254090	rs2986041	G	T	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	105344756	rs2236209	T	C	8482.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	105361816	rs4918031	T	G	9400.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:2,360:0.99:362
chr10	105362209	rs4917396	T	C	16280.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr10	105363289	rs3740471	T	C	15822.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr10	105365386	rs7088714	A	G	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	105428453	rs10533306	CAG	C	24114.73	.	AC=2;AF=1.00;AN=2;DB;DP=698;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=39.34;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,613:1.00:613
chr10	105483964	rs12220667	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	105495612	rs6584568	T	C	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	105561300	.	T	TACACACACACACACACAC	868	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=0.9998;HP=4;HapScore=1;MGOF=17;MMLQ=17;MQ=55.57;NF=0;NR=2;PP=868;QD=436.0;SC=TATGTCTAAATACACACACAC;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=2;WE=105561308;WS=105561290;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr10	105614884	rs4918064	A	G	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	105615105	rs10883929	G	C	13737.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=-0.331;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:2,535:1.00:537
chr10	105657316	rs10786775	G	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	105658588	rs2902639	G	C	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	105659826	rs2487999	T	C	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	105670134	rs200538919	TG	T	381.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	105758670	rs10883960	A	G	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	105763026	rs3740469	C	T	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	105768158	rs805664	A	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr10	105781596	rs68117222	CAT	C	5552.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	105793173	rs1747675	T	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	105793587	rs11596192	C	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	105793750	rs17116350	T	C	17214.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:2,677:1.00:679
chr10	105796399	rs2274098	G	C	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	105796449	rs2476957	A	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	105796738	rs805714	A	C	144.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	105796819	rs2476958	A	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	105797045	rs34553613	A	ATT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;QD=22.85;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	105797378	rs2282437	G	A	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	105797693	rs61382109	TA	T	1028.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	105797989	.	TACACACACACACACACACACACAC	T,TACAC	2096.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=67;set=Intersection	GT:AF:DP	1/2:0.23,0.71:56
chr10	105798872	rs2274100	T	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	105799216	rs2296219	G	T	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	105799550	rs376820281	ACACG	A	128.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=-0.456;QD=2.63;ReadPosRankSum=-0.137;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr10	105799552	rs67083195	ACG	A	636.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr10	105799599	rs11191905	C	A	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	105800321	rs12763538	C	T	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	105800348	rs139480552	ATGGATGGATAGG	A	713.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr10	105801253	rs4918079	G	A	6137.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.36;ReadPosRankSum=0.084;SOR=0.291;set=HC	GT:AD:AF:DP	1/1:1,251:1.00:252
chr10	105803080	rs2147269	A	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	105805310	rs805719	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	105805436	rs805720	G	A	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	105806310	rs805721	C	A	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	105810400	rs805722	T	C	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	105810879	rs805723	C	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	105814826	rs805691	C	A	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	105814937	rs805692	C	T	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	105815201	rs201385541	G	GTC	249.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=64.58;MQRankSum=-0.897;QD=8.61;ReadPosRankSum=2.098;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr10	105815202	.	T	TCTCA	209.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr10	105815241	rs1747677	A	C	1082.53	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.66;ReadPosRankSum=-0.858;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:2,26:0.93:28
chr10	105816685	rs805696	T	C	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	105816916	rs805698	C	T	12317.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr10	105817043	rs805699	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	105819956	rs805701	G	A	5892.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	105821136	rs805704	A	T	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	105821294	rs805705	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	105821836	rs805706	C	T	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	105824333	rs805708	G	A	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	105837000	rs2274106	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	105938913	rs60561340	CAG	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-0.495;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:51,8:0.14:59
chr10	105952135	rs200467306	CCA	C	1261.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	105991884	rs789577	T	G	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr10	106582029	rs1490182	C	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	106602537	rs41317264	C	T	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	106675485	rs17117920	G	A	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	106865381	rs17118359	G	A	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	106907440	rs791125	C	T	5157.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	106907586	rs791126	C	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	106916819	rs2297500	G	A	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	106923973	rs11192344	C	T	4401.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	106927230	rs12411545	C	T	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=2.160;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	106974123	.	AAC	A	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DP=792;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.718;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:664,91:0.12:755
chr10	107005570	rs72819920	C	T	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	108371571	rs137930414	A	AGTTT	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	108380006	.	CAG	C	57	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=57;QD=32.0;SC=GGAGAGGGGCCAGAGAGAGAG;SbPval=1.0;Source=Platypus;TC=11;TCF=7;TCR=4;TR=2;WE=108380015;WS=108379998;set=Platypus	GT:AD:AF:DP	1/0:9,2:0.18:11
chr10	108389249	rs1322004	T	C	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	108427682	rs66783381	CA	C	97.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=13.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	108439103	rs821929	A	C	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	108447836	rs821935	C	T	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	108466412	rs2756231	C	T	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr10	108469161	rs2756232	C	G	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	111440605	rs7898586	A	G	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	111440719	rs7915504	T	A	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr10	111625108	rs483072	T	C	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	111630731	rs612155	G	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	111633025	rs642938	A	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	111646147	rs623980	A	G	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	111667702	rs686155	T	C	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	111683280	rs145751207	CGGCG	C	2515.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	111886089	rs3731566	G	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	112044559	.	CT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.865;QD=1.15;ReadPosRankSum=1.094;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr10	112266822	rs1889566	GC	AT	28806.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr10	112327678	rs55750861	C	CA	6618.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.50;QD=39.40;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	112328838	rs4917577	C	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	112349204	rs2419572	A	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	112356331	rs7075340	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	112360315	.	G	GT	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.884;QD=2.43;ReadPosRankSum=0.123;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:100,46:0.32:146
chr10	112361870	rs2419565	A	G	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	112362019	rs2039874	G	T	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	112570243	rs11195338	T	C	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	112572458	rs1417635	G	C	14822.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr10	112579663	rs11195343	C	T	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	112583189	rs202034773	CTTTTTTTTTTTTT	C	2587.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;QD=34.50;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:1,74:0.99:75
chr10	112590810	rs7070640	G	C	10858.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr10	112595719	rs942077	G	C	3674.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	112641053	rs7081726	A	G	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	112667273	rs34559519	G	GA	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=0.543;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr10	112697017	.	CT	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.801;QD=1.30;ReadPosRankSum=-1.571;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:127,47:0.27:174
chr10	112764594	rs1980869	T	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	114061979	rs10749114	G	A	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	114154662	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.511;QD=0.22;ReadPosRankSum=-0.341;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:148,27:0.15:175
chr10	114168056	.	C	CA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.383;QD=0.80;ReadPosRankSum=2.392;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:77,20:0.21:97
chr10	114169552	rs7919710	G	A	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	114171385	rs372207130	TAC	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.242;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr10	114181683	rs2255740	A	G	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr10	114185353	rs68098308	T	TAA	342.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	114185856	rs34341101	T	TG	455.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	114186624	rs2256368	G	A	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	114224502	rs3740143	C	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	114496687	rs12770115	A	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	114849353	rs10749127	C	T	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	114889837	rs34096467	TC	T	167.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	114903847	rs72143488	CTGTGTGTGTGTCTGTGTGTGTGTGTG	CTG,C	1974.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=67;set=Intersection	GT:AF:DP	1/1:1.00:52
chr10	114910667	rs113579124	G	GT,GTT	3238.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.72;ReadPosRankSum=2.576;SOR=0.621;set=HC	GT:AD:AF:DP	1/2:11,127,35:0.73,0.20:173
chr10	115327193	rs2286745	A	G	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	115334124	rs3740530	C	T	5892.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	115335843	rs911709	A	G	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	115340492	rs2286742	G	A	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	115341753	rs2245056	G	A	6407.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr10	115341846	rs2245058	G	A	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	115349397	rs11196388	AG	A	2460.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=33.25;SOR=1.457;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	115357078	rs12241995	G	A	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.35;SOR=1.646;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	115357131	rs113389465	CA	C	587.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	115370113	rs11333099	TA	T	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.941;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr10	115370254	rs12243176	A	G	21248.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:1,493:1.00:494
chr10	115370274	rs10749138	T	C	21117.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr10	115371873	rs1539588	G	T	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	115373851	rs2419850	T	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	115375528	rs11196397	C	A	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	115381747	rs868738	G	A	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	115392919	rs2270182	T	A	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	115401031	rs5788038	AT	A	2161.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	115409840	rs2275799	C	T	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr10	115411598	rs4918861	C	A	7221.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr10	115411614	rs2154028	A	G	7654.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.93;ReadPosRankSum=2.105;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,306:1.00:307
chr10	115412686	rs3121488	G	A	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	115412793	rs3737322	A	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	115413901	rs41310308	T	C	8549.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr10	115417289	rs1891762	G	A	9055.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr10	115422277	rs10430683	G	A	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	115422474	rs3127122	A	G	11507.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr10	115439569	rs7921977	C	T	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	115515120	rs3981351	G	A	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	115609915	rs3750898	C	G	8786.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	115618246	rs2301180	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	115644040	rs7913176	G	A	4499.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	115675025	rs7895609	G	A	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	115805056	rs1801253	G	C	26917.77	.	AC=2;AF=1.00;AN=2;DB;DP=1089;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,1053:1.00:1053
chr10	115933905	rs17091403	C	T	9160.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr10	115987550	rs11196660	G	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	116032519	rs597371	A	G	6978.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr10	116058933	rs1889450	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	116060194	rs3214266	A	AG	7906.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	116060387	rs2286396	T	C	15033.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:1,582:1.00:583
chr10	116068176	rs581327	A	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	116073696	rs3813722	C	T	10574.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,415:1.00:415
chr10	116075228	rs694883	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	116075271	rs377755078	T	TCC	3948.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	116079505	rs10885547	G	A	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	116085784	rs74928179	C	CCCG	15564.73	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=44.98;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	116091555	rs10787524	T	C	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	116100320	rs4752395	T	G	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	116196143	.	G	GA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.396;QD=1.52;ReadPosRankSum=0.449;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chr10	116196198	rs74160409	G	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	116199175	rs941853	G	A	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	116203911	rs57563904	G	GA	711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.475;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:27,58:0.68:85
chr10	116209978	.	A	AAC	736.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;QD=36.84;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	116210018	rs10885568	T	C	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	116222749	rs7920878	G	A	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	116225365	rs7899255	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	116304958	rs10885579	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	116304971	rs2483595	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	116307504	rs2247528	A	G	9060.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr10	116719543	rs7099565	G	A	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	116730337	rs6585309	G	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	116856543	rs1264777	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	116931101	rs3086141	C	CTT	1361.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	117075175	rs1953758	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	117226880	rs17723399	T	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	117228946	rs12770375	C	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	117278988	rs6421370	G	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	117308880	rs1336109	A	G	148.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	117309098	rs1336108	G	A	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	117357169	rs11197326	G	A	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	117486910	rs2286631	T	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	117856379	rs66851912	TGCACAC	T	1459.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:10,47:0.82:57
chr10	117856386	rs376047022	GCACACGCA	G	81.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=62.04;MQRankSum=-0.865;QD=1.39;ReadPosRankSum=0.252;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr10	117971016	rs7090693	T	C	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	117986207	rs7094346	G	T	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	118031376	rs2532691	C	A	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	118031619	rs2577360	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	118116798	rs4751960	G	A	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	118117576	rs7909371	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	118138704	.	AT	A	26	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=12;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=2;NR=0;PP=26;QD=20.0;SC=CTTTGAATTTATTTTTTTTTA;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=118138712;WS=118138699;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	118138939	rs12254317	T	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	118187399	rs10787669	T	G	140.03	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.68;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	118187405	rs10787670	T	C	140.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	118215150	rs34077637	C	CT	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	118231360	rs10736251	G	A	7554.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	118231363	rs1897519	A	G	7554.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	118231406	rs10749217	A	C	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	118310802	rs200851172	CAA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=1.523;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr10	118313116	rs2915749	T	C	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	118313265	rs2915748	T	C	8491.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr10	118351905	rs1867991	A	C	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	118357490	rs2915764	C	T	7574.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr10	118359548	rs3816355	T	C	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	118368493	rs5003367	C	A	6313.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.246;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr10	118380511	rs3010502	A	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=25.68;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	118380629	rs3214321	TC	T	794.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	118383463	rs56189579	A	AG	6724.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;MQ=60.23;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	118387137	rs7092580	A	G	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	118394551	rs2286779	G	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	118396278	rs11197776	G	T	1099.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.605;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.619;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.29;ReadPosRankSum=0.794;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:6,51:0.89:57
chr10	118397884	rs4751995	A	G	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	118397894	rs4751996	A	G	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	118397971	rs10885997	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	118398046	rs7910135	C	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	118404620	rs2301179	A	G	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	118436068	rs2166634	G	T	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	118466664	rs66564530	GCACACACA	GCACA,G	1140.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	1/1:1.00:24
chr10	118501765	rs3095121	A	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	118620732	rs56177931	TAA	T	182.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	118628036	rs1637571	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	118633548	rs1637574	A	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	118643670	rs2257791	G	A	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	118646129	rs2531685	G	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	118667346	rs2531690	A	C	10211.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr10	118708315	rs10595325	GAGA	G	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	118897632	rs113752965	C	G	60.03	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	119001151	rs2619094	A	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	119013080	rs2256299	T	G	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	119014023	rs2072362	C	T	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	119014931	rs363420	C	T	11672.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr10	119014948	rs363343	C	A	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	119026401	rs363266	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	119036625	rs363279	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	119042761	rs363293	C	T	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	119078593	rs10082507	T	C	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	119133968	rs3814230	G	C	12838.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,493:1.00:493
chr10	119134058	rs3814229	T	C	14728.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:2,580:1.00:582
chr10	119307524	rs2240776	T	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	119793617	rs2928119	C	G	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	119793629	rs2928118	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	119805684	rs2240778	T	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	120070427	rs4751651	G	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	120070843	rs34120011	G	GA	385.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	120081948	rs853911	C	T	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	120095037	rs34302018	GA	G	4325.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	120353910	rs1613448	T	C	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr10	120445794	rs752483	G	A	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	120460715	rs2274314	G	T	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	120795795	.	T	TA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.394;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr10	120803435	rs565922	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	120803788	rs658352	T	C	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	120810623	rs669964	A	C	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	120817450	rs10886375	A	G	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.340;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	120818609	rs6585524	C	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.91;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	120819453	rs10787901	A	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	120819458	rs10787902	T	C	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	120820224	rs3740555	C	A	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	120828969	rs7908387	A	G	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.32;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	120832872	rs1397616	T	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	120864868	rs1511033	T	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	120865187	rs11198775	T	A	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	120883117	.	C	CT	946.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DP=611;ExcessHet=3.0103;FS=12.035;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.908;QD=2.37;ReadPosRankSum=2.238;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:277,122:0.31:399
chr10	120889022	rs3802739	T	C	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=26.89;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	120896027	rs11198799	G	A	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=25.34;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	120896194	rs41284414	A	C	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.75;QD=27.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	120905940	.	CGTGTGT	C,CGT	4217.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=178;set=Intersection	GT:AF:DP	1/2:0.28,0.69:116
chr10	120905976	rs33947324	C	CGT	3734.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:5,103:0.95:108
chr10	120917269	rs2420494	A	T	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	120917445	rs2275111	G	A	12185.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr10	120919179	rs3740558	G	A	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	120919246	rs2181118	T	C	10141.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr10	120920588	rs10749291	T	C	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	120923552	.	CAA	C	34.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.81;ReadPosRankSum=0.253;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr10	120923780	rs35023478	C	CTT	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	120924874	rs933092	G	C	8429.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	120928938	rs2271362	C	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.727;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	120933324	rs3758609	G	A	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	121093160	rs10886461	A	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	121140511	rs4751714	A	G	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	121140534	rs2275037	C	G	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	121190040	rs10787967	C	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	121196062	rs2275040	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	121199189	rs2245364	T	C	8455.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr10	121199310	rs1109490	T	C	7395.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.50;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr10	121199365	rs1109489	T	C	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	121199437	rs915116	T	C	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	121201626	rs2275044	T	C	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	121287019	rs3009921	G	A	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	121338401	rs4752334	T	A	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	121347839	rs146020828	TTTTC	T	250	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr10	121429394	rs35434411	G	A	10986.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr10	121436362	rs196295	A	G	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,186:0.99:187
chr10	121541048	rs5788367	C	CT	305.74	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr10	121551581	rs2289306	A	C	8921.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=-0.308;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:4,351:0.99:355
chr10	121556450	rs35384980	T	G	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	121565165	rs12776803	G	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	121571507	rs3781503	T	C	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	121579040	rs17099318	T	C	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	121583464	rs35535788	T	TA	3834.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	121586827	rs56055506	A	G	9928.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr10	121591511	rs2273747	G	A	15737.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr10	121596611	rs3765508	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	121602732	rs17099338	C	T	10172.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr10	121602949	rs3740565	G	A	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	121607015	rs3740567	C	T	150.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	121607024	rs3740568	G	A	181.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	121607324	rs17099343	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	121618382	rs34469768	T	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	121618787	rs200257739	TACACAC	TAC,T	308.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=16;set=Intersection	GT:AF:DP	1/1:1.00:12
chr10	121632120	rs11556853	A	T	6991.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr10	121668501	rs3740569	C	A	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	121668656	rs3740570	T	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	121671651	rs17099368	T	C	7659.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr10	121675238	rs71482627	C	CTT	1325.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.422;QD=21.73;ReadPosRankSum=-1.346;SOR=0.232;set=HC	GT:AD:AF:DP	1/1:4,57:0.93:61
chr10	121678146	rs41300221	T	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	121678896	rs2475300	C	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	121679013	rs2475298	A	G	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	121680359	rs2271123	A	G	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	121685448	rs6585564	A	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	121685559	rs12771873	G	A	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	121692777	rs2279940	A	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	121693246	rs34826964	A	G	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	121717956	rs34665773	GT	G	1337.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:11,81:0.88:92
chr10	122216790	rs10886691	A	T	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	122263555	rs2478418	A	T	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	122273276	rs5788426	CT	C	587.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr10	122334561	rs4751791	C	T	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	122619466	rs3217470	TAC	T	844.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr10	122622121	rs3816173	A	C	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	122630587	rs4281410	A	G	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	122640168	rs11453234	C	CA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=1.189;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr10	122649482	rs2289337	A	G	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	122663585	rs1652727	G	A	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	122664694	rs10788127	G	A	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	122664967	rs1866516	C	T	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	122665285	rs1652726	A	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	122667939	rs78898484	C	T	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	123239112	rs1047057	G	A	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr10	123243197	rs2278202	G	A	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	123246732	rs148450955	TTTCTAAGGCCAGCTCCTGCACC	T	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	123247037	rs2981461	C	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.61;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	123247044	rs2981460	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	123277742	rs2420942	C	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	123279745	rs2981448	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	123298158	rs1047100	T	C	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	123503431	rs71852543	C	CTT	378.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-0.656;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr10	123596254	rs4237536	T	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	123670759	rs17631200	G	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	123673339	rs10749435	T	C	8445.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr10	123721624	rs374541666	TAA	T	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.861;QD=6.80;ReadPosRankSum=-0.508;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr10	123722951	rs59415272	CT	C	353.74	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:3,24:0.89:27
chr10	123724767	rs4752626	T	G	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	123734278	rs113959117	C	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	123792509	rs142496257	A	T,AACT	1392.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=53.57;SOR=1.220;set=HC	GT:AD:AF:DP	1/2:0,7,19:0.27,0.73:26
chr10	123792527	rs11361502	AC	A	1714.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=41.82;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	123842065	rs2459103	A	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	123842523	rs11200385	G	A	15841.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:1,606:1.00:607
chr10	123844503	rs10887063	C	T	8462.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr10	123845211	rs11200387	G	A	13239.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr10	123845322	rs7073433	T	C	7155.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr10	123845897	rs1106992	G	C	12723.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr10	123846288	rs4752642	G	A	10148.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:2,390:0.99:392
chr10	123846485	rs4751871	A	G	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:2,285:0.99:287
chr10	123846860	rs11599291	C	T	13880.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr10	123847355	rs10788237	G	A	8822.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr10	123986119	rs61312157	AT	A	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.316;QD=1.31;ReadPosRankSum=-0.744;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:85,31:0.27:116
chr10	124001539	rs11200496	G	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	124008927	rs2273794	T	C	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	124008959	rs2273795	G	T	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	124034528	rs7096744	G	T	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	124034703	rs7080859	T	C	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	124036141	rs6585808	T	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	124036190	rs7086389	T	C	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	124036226	rs7086403	T	C	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	124036494	rs7090214	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	124036543	rs7072288	C	G	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	124049445	.	A	G	7511.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.846;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=3.099;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=0.741;SOR=0.299;set=HC	GT:AD:AF:DP	1/1:1,295:1.00:296
chr10	124066652	rs7082865	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	124089036	rs2421013	G	A	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	124089075	rs986178	G	A	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	124152936	rs3838776	G	GA	326.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	124159835	rs9988734	A	G	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	124175273	rs4751892	G	A	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	124183732	rs4405249	T	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	124186367	rs2292625	G	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	124271589	rs2672586	G	A	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	124271595	rs2272599	G	A	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	124273671	rs2293871	C	T	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	124320194	rs2981745	T	C	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	124325409	rs3019515	T	G	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	124325569	rs3019516	A	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	124325631	rs2981768	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	124329580	rs11524819	C	A	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=45.81;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	124329583	rs11524820	G	A	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=43.26;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	124329672	rs3740220	TC	CT	10426.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr10	124329710	rs11523871	C	A	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	124329746	rs3740222	A	T	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	124329801	rs3740223	G	A	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	124330240	rs2981790	A	G	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	124330252	rs2981791	A	G	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	124330427	rs3013236	C	T	8889.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr10	124331867	rs7084792	C	T	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.73;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	124331944	rs2277229	C	T	7817.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	124331957	rs2277230	T	C	7503.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=45.48;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	124331963	rs2277231	A	G	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=45.90;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	124332035	rs2277232	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	124333308	rs2277235	G	A	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	124335866	rs1985025	C	T	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	124347917	.	G	GA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.871;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr10	124697198	rs10794580	G	A	8903.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr10	124711632	rs9804347	T	A	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	124742586	rs3736585	G	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	124742683	rs3736584	C	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	124742792	rs3736583	G	A	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	124742895	rs3736582	G	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	124743002	rs148894669	A	G	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	124746801	rs7096614	T	G	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	124800853	rs1140591	C	T	6194.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	124810746	.	C	CT	150	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.9973;HP=10;HapScore=2;MGOF=38;MMLQ=27;MQ=59.81;NF=0;NR=13;PP=150;QD=12.4615384615;SC=GTAATTCAGCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=13;WE=124810754;WS=124810736;set=Platypus	GT:AD:AF:DP	0/1:1,13:0.93:14
chr10	124812487	rs2421166	A	G	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	124812685	rs11307362	AT	A	1842.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:14,121:0.90:135
chr10	124813390	rs34955007	G	A	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	125425822	rs10902974	T	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	125426412	rs12263344	A	G	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr10	125426565	rs4980313	G	C	10174.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr10	125426627	rs3808964	G	T	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	125473208	rs12256385	G	A	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	125506302	rs7088479	T	C	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	125521533	rs10794566	G	A	12204.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr10	125521590	rs10794567	G	A	11598.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr10	125521721	rs10751743	G	A	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	125521751	rs10794568	C	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	125526689	rs1896392	G	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	125557769	rs11356678	GA	G	32	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.57;ReadPosRankSum=-1.465;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr10	125558507	rs55721423	A	T	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	125650793	rs28513406	A	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.89;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	125673492	rs7893288	A	G	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	125673547	rs4329614	T	G	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	126086730	rs2459217	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	126089656	rs2459215	T	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	126089703	rs2491158	G	A	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	126091814	rs2240882	A	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	126093991	rs9422807	T	C	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	126097716	rs7923012	G	A	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	126100523	rs10794058	G	A	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	126150338	rs2459213	C	T	236.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.73;ReadPosRankSum=1.304;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr10	126150388	rs2491156	C	A	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	126172863	rs6597801	A	G	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	126185451	rs10794134	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	126185618	rs3824810	A	G	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr10	126185707	rs3824809	C	T	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	126186771	rs17620824	A	G	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	126187229	rs10558100	CTT	C	415.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;MQRankSum=-0.737;QD=13.86;ReadPosRankSum=0.245;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:7,23:0.77:30
chr10	126187451	.	CTTT	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.115;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr10	126394993	rs3781447	C	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	126395123	rs7897256	T	C	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr10	126471382	.	C	CAA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.617;QD=5.57;ReadPosRankSum=1.201;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr10	126480276	rs74866494	C	T	11856.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr10	126505062	rs11451694	T	TA	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr10	126629204	rs7074163	G	A	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	126660781	rs3802700	A	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	126662451	rs3740534	C	T	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	126678122	rs140913543	GT	G	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=12.505;MLEAC=1;MLEAF=0.500;MQ=52.69;MQRankSum=-2.817;QD=12.99;ReadPosRankSum=0.522;SOR=0.029;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr10	126678128	.	T	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.538;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=11.954;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-3.224;QD=10.46;ReadPosRankSum=0.943;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr10	126686827	rs1982225	T	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	126714714	rs2946994	G	C	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr10	126714966	rs3012075	A	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	126716346	rs2938006	C	T	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	126721441	rs2839737	C	A	10016.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr10	127414473	.	TA	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.026;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr10	127426430	rs3740181	A	G	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	127426588	rs3740180	C	A	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	127426835	rs3943225	G	T	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	127436411	rs2296832	T	C	7986.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr10	127441573	rs10751530	G	T	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr10	127445408	rs4962313	G	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	127460952	rs10901424	G	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr10	127462525	rs10901425	A	G	17700.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,674:1.00:674
chr10	127462833	rs28381281	C	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	127483573	rs3740179	G	A	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	127484617	rs2281955	C	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	127484653	rs2281954	G	A	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	127491732	rs74366862	CT	C	2802.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr10	127500718	rs10901444	C	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	127504660	rs2366044	A	G	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	127515069	rs10159992	C	T	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	127520313	rs11596442	A	G	178.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	127522572	rs3740206	T	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	127524612	rs4075326	C	T	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	127530325	rs3208565	T	C	6607.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	127548587	rs1539315	C	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	127584978	rs5006357	A	G	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr10	127585015	rs79042596	G	T	2348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=3.699;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-8.770;QD=13.82;ReadPosRankSum=1.687;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:103,67:0.39:170
chr10	127585035	rs113524015	C	G	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.417;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-11.170;QD=10.09;ReadPosRankSum=3.552;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:169,72:0.30:241
chr10	127585040	rs5006358	G	A	2612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.002;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-12.315;QD=9.79;ReadPosRankSum=3.269;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:187,80:0.30:267
chr10	127585090	rs74635147	C	A	9644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.526;ClippingRankSum=0.000;DB;DP=811;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-25.999;QD=11.97;ReadPosRankSum=-1.182;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:536,270:0.33:806
chr10	127585097	rs78188902	T	C	10035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.609;ClippingRankSum=0.000;DB;DP=832;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=56.00;MQRankSum=-26.808;QD=12.14;ReadPosRankSum=1.007;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:553,274:0.33:827
chr10	127585099	rs79920605	A	G	10171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.035;ClippingRankSum=0.000;DB;DP=831;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=-26.848;QD=12.31;ReadPosRankSum=1.152;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:549,277:0.34:826
chr10	127585112	rs72832617	T	C	10200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.874;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=-26.410;QD=12.30;ReadPosRankSum=5.218;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:548,281:0.34:829
chr10	127585120	rs80288044	G	C	10152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.162;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-24.942;QD=12.64;ReadPosRankSum=5.686;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:521,282:0.35:803
chr10	127585150	rs74162870	C	A	6292.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:429,315:0.42:744
chr10	127585179	rs74162871	G	C	6838.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:339,324:0.49:663
chr10	127585237	rs5013589	C	T	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=4.846;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-3.667;QD=3.43;ReadPosRankSum=1.121;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:162,28:0.15:190
chr10	127585260	rs4986789	G	T	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.914;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=9.747;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-4.341;QD=7.51;ReadPosRankSum=1.942;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:95,33:0.26:128
chr10	127585288	rs5013590	C	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr10	127585307	rs74579856	C	T	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.163;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=9.641;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-0.024;QD=11.39;ReadPosRankSum=-1.278;SOR=2.286;set=HC	GT:AD:AF:DP	0/1:46,31:0.40:77
chr10	127585316	rs113284764	G	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-0.981;QD=3.56;ReadPosRankSum=0.369;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr10	127585360	rs78190003	C	A	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.412;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-1.302;QD=9.36;ReadPosRankSum=-1.310;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr10	127585363	rs74162872	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-2.007;QD=10.38;ReadPosRankSum=-0.252;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr10	127668317	rs11244744	G	A	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	127668431	rs11244745	A	G	7734.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr10	127668487	rs2176097	G	A	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	127668610	rs2138275	C	T	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	127677374	rs2280173	A	G	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	127685091	rs3736477	T	C	9634.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr10	127693432	rs2138283	C	T	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	127697165	rs2292690	T	G	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	127706028	rs3781001	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	127708091	rs2176099	AG	GT	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	127708428	rs2138280	A	T	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	127708468	rs35835884	G	A	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	127708503	rs2292694	G	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	127730972	rs150225509	CTGTG	C	1583.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	127730991	rs45535336	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	127731012	rs11244780	T	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	127731535	rs7911793	TG	CA	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	127734486	rs1710312	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	127734513	rs1710313	A	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	127755544	rs1278280	T	G	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	127759943	rs7903316	T	A	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	127786969	rs2290842	A	G	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	127829012	rs1551678	C	G	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	127829043	rs71490760	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	127829304	rs17154306	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	127843641	rs1466358	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	127843740	rs1466359	G	T	4746.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	127843756	rs1466360	G	A	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	127843921	rs1466361	T	C	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	128019025	rs3740199	C	A	4061.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	128202435	rs1436803	T	C	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	128209769	rs2099552	T	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	128209797	rs2099553	C	T	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	128209959	rs4962342	G	T	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	128335010	rs2842150	C	T	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	128335225	rs2842149	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	128788633	rs3750560	C	A	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	128797717	rs2275540	T	C	8390.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr10	128797809	rs41282888	T	C	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	128807078	rs9418678	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	128807096	rs9418679	G	C	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	128821616	rs9418791	T	G	7612.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr10	128821636	rs9418698	C	T	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	128822873	rs3818879	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	128822886	rs3818880	G	A	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	128830336	rs2275534	G	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	128830409	rs2229597	A	G	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	128835834	rs77532250	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	128836214	rs7085407	G	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	128840842	rs880272	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	128841245	rs144019822	CAG	C	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	128841570	rs882052	T	C	110.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	128850789	rs72279241	CA	C	54.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=6.81;ReadPosRankSum=1.534;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr10	128908472	rs3740012	A	G	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	128944408	rs117367773	G	T	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	128952265	rs7068954	A	G	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	128974716	rs2489384	A	G	7149.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	129178415	rs142651905	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	129183015	rs878562	T	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	129207514	rs2296629	G	A	7772.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr10	129208894	rs6482874	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	129208954	rs11017943	T	G	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	129209084	rs2296628	A	G	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	129213586	rs3736940	C	T	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	129213631	rs3736939	A	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	129216658	rs2229600	T	C	16018.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr10	129237580	rs2275052	C	T	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	129249662	rs2229603	G	A	11517.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr10	129249676	rs2229604	C	T	12938.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr10	129249693	rs2229605	G	A	24880.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,560:1.00:560
chr10	129249701	rs2229606	C	G	25419.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,580:1.00:580
chr10	129249914	rs3824814	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	129249925	rs10765104	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	129534475	.	C	CGCGG	187.87	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	129534476	.	CCA	C	187.87	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	129534679	rs4751501	T	C	5394.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	129534722	rs79103670	C	T	6985.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	129534864	rs4751503	A	C	19132.77	.	AC=2;AF=1.00;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	1/1:0,740:1.00:740
chr10	129535455	rs77244569	G	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	129763277	rs4751554	C	T	6853.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr10	129845547	rs4262642	A	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	129845902	rs71474240	G	A	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	129846010	rs7911904	G	A	9001.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr10	129854369	rs4424589	T	C	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	129859061	rs28411949	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	129859065	rs11016046	T	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.14;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	129866449	rs7100666	C	G	12287.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr10	129870293	rs11016049	G	C	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	129870622	rs34882498	TA	T	762.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=19.56;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	129871690	rs2275803	A	G	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	129871747	rs2275802	C	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.56;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	129871766	rs3216057	A	AG	518.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	129871795	rs11016053	C	T	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	129883291	rs4750684	G	T	9382.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr10	129883370	rs1129205	A	G	16132.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,638:1.00:638
chr10	129897565	rs3781301	C	T	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	129899543	rs10082504	C	T	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	129899578	rs8473	T	C	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	129899778	rs11106	G	C	8605.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:2,328:0.99:330
chr10	129901393	rs11016071	T	C	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	129901722	rs10082432	G	A	6891.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	129901726	rs10082533	C	T	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	129901825	rs10082391	T	C	11571.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr10	129901946	rs1050767	T	G	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	129902158	rs12777740	C	T	9675.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr10	129902281	rs1063535	G	A	8811.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr10	129903016	rs7071768	T	C	15316.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:6,611:0.99:617
chr10	129904474	rs61738284	G	A	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	129904477	rs11591817	C	T	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	129905429	rs7918199	C	T	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	129906364	rs4750685	G	A	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	129906468	rs4750936	C	T	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr10	129907544	rs2240	G	C	9586.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr10	129910475	rs997983	T	G	8264.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr10	129911856	rs11016076	C	G	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	129917560	rs2071498	T	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	131265665	rs16906255	T	G	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	131334789	rs10734087	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	131639306	rs68001511	T	TCCCC	801.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.18;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	131641361	rs35210769	T	TG	2506.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr10	131755652	rs36101167	A	AT	444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.997;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:163,56:0.26:219
chr10	131904286	rs61749960	G	A	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	131905056	rs149953039	C	T	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	131905518	rs145120760	T	A	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	131906096	rs55975328	C	T	8730.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr10	131934552	rs2274221	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	131934628	rs2274220	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	131943423	rs7073590	G	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	131943719	rs7922450	T	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=24.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	131965026	rs3736899	A	G	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	131967693	rs17297984	T	A	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	132961575	rs35645120	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	133109602	rs148913526	G	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	133607892	rs4897739	T	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	133607904	rs4897781	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	133607937	rs4897782	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	133607947	rs4897740	T	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	133608210	rs4897741	A	G	5765.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	133608237	rs4897783	G	A	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	133608291	rs4897742	TT	GG	6791.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=-1.003;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:2,266:0.99:268
chr10	133608495	rs4897744	A	T	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	133955569	rs5789117	C	CCG	3413.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.216;QD=24.92;ReadPosRankSum=-0.045;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:2,135:0.99:137
chr10	133961494	rs2818384	C	T	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	133961564	rs2818383	T	C	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	133961636	rs111344225	C	CTGAACA	500.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	133963096	.	C	CT	1375	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=5;HapScore=1;MGOF=77;MMLQ=23;MQ=55.22;NF=0;NR=34;PP=1375;QD=41.2058823529;SC=GCCCCACCCCCCTCCGCCCCC;SbPval=1.0;Source=Platypus;TC=34;TCF=0;TCR=34;TR=34;WE=133963104;WS=133963086;set=Platypus	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	133963348	rs112413966	T	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.61;QD=21.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	133963466	rs9419380	A	G	8366.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr10	133967593	rs7906747	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	133976706	rs12776458	G	T	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	133981361	.	C	CCTCTCGG	4662.73	.	AC=2;AF=1.00;AN=2;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.13;QD=49.60;SOR=2.204;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	133981368	rs45456394	G	C	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.67;QD=40.53;SOR=1.490;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	133981682	rs4880338	G	A	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr10	134000498	rs71905561	TCCCCCCGCCCGC	T	20923.73	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr10	134010224	rs1552681	C	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	134013856	rs871883	G	T	9437.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.617;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.624;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.93;ReadPosRankSum=0.568;SOR=0.676;set=HC	GT:AD:AF:DP	1/1:1,363:1.00:364
chr10	134013990	rs2247705	G	A	29613.77	.	AC=2;AF=1.00;AN=2;DB;DP=1167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,1157:1.00:1157
chr10	134014033	.	G	C	8887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=0.000;DP=671;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=0.645;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:231,434:0.65:665
chr10	134014653	rs11592988	T	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	134016115	rs2637629	G	A	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	134016396	rs3736258	G	A	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	134017295	rs12313	A	G	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	134021740	rs923659	G	A	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	134021810	rs923660	T	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	134036053	rs2814197	G	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	134036057	rs2637635	C	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.96;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	134036073	rs2814196	G	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	134036193	rs2818401	A	G	10790.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr10	134036596	rs1994688	G	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	134038715	rs902629	A	G	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	134137627	rs7914257	T	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	134143942	rs1052281	C	T	13735.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr10	134143985	rs1132165	GC	TT	22747.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr10	134145136	rs7086691	A	G	14276.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	134145136	.	ACC	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=2;HapScore=1;MGOF=28;MMLQ=23;MQ=60.0;NF=87;NR=67;PP=2947;QD=20;SC=GGCAGCGAGGACCGCTCCAAA;SbPval=0.55;Source=Platypus;TC=165;TCF=93;TCR=72;TR=154;WE=134145146;WS=134145126;set=Platypus	GT:AD:AF:DP	1/1:11,154:0.93:165
chr10	134145138	rs7080014	C	G	14276.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr10	134145153	rs7100410	G	A	9284.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	134145166	rs13882	T	C	10200.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr10	134145288	rs12778987	C	A	20677.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.09;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,469:1.00:469
chr10	134145293	rs12784130	G	T	20284.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.98;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr10	134145336	rs12784321	G	T	6107.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr10	134145398	rs199941683	A	AC	1516.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr10	134145420	rs56274613	AC	A	1770.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	134145438	.	CAA	C	1623.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=43.88;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	134145439	.	AA	CC	803	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=1;HapScore=2;MGOF=108;MMLQ=24;MQ=59.83;NF=3;NR=13;PP=803;QD=53.5292421789;SC=CCGCAAGCGCAACCCCCCGCC;SbPval=0.55;Source=Platypus;TC=17;TCF=3;TCR=14;TR=16;WE=134145449;WS=134145429;set=Platypus	GT:AD:AF:DP	1/1:1,16:0.94:17
chr10	134145441	.	C	CCCT,CT	1562.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=38;set=Intersection	GT:AF:DP	1/1:1.00:35
chr10	134147341	rs12416634	T	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	134151034	rs2259594	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	134151288	rs2259600	A	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	134157875	rs2698779	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	134161517	rs2474329	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	134161633	rs2474328	A	G	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	134165291	rs2261222	C	G	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	134166273	rs72479351	A	G	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	134180353	rs45626936	C	T	11147.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr10	134188874	rs1054038	G	A	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	134210667	.	CCGGCGG	C	1273.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.291;MLEAC=2;MLEAF=1.000;MQ=61.01;MQRankSum=-2.551;QD=39.80;ReadPosRankSum=0.109;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr10	134210943	rs188071015	T	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	134218269	rs11146363	C	T	11440.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr10	134237240	rs1881746	T	C	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	134237249	rs150298334	C	CTGTG	2874.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=42.28;SOR=2.041;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	134237276	rs1574449	T	G	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=34.68;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	134237425	rs1574448	A	G	6932.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr10	134239228	rs12775406	T	C	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	134598628	rs2804003	A	G	5812.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	134622408	rs2767434	T	C	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr10	134622507	rs2767431	A	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	134623959	rs2254419	T	C	10138.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr10	134626453	rs3750586	C	T	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	134627593	rs11146529	G	A	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	134627882	rs7070307	G	T	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	134647453	rs3750583	C	T	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	134659626	rs10870341	A	G	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	134659766	rs12260141	G	C	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	134664875	rs7913626	A	G	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,217:1.00:218
chr10	134726094	.	TCTCTCTC	T	1799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=5.262;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.760;QD=17.14;ReadPosRankSum=2.464;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:36,69:0.66:105
chr10	134884516	rs4271312	G	A	6511.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr10	134884546	rs4576736	A	G	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	134884595	rs4271313	G	A	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	134884610	rs4486541	C	G	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr10	134884755	rs11101751	C	A	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	134885677	rs7069085	A	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	134885700	rs7094939	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	134886618	rs4838684	G	C	7881.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr10	134895530	rs34883766	C	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	134898594	rs4838694	A	G	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	134902314	rs10745302	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	134902396	rs10776692	C	G	7196.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	134902396	.	CGC	GGT	2413	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=21;MQ=60.0;NF=45;NR=30;PP=2413;QD=32.8862383315;SC=CTCACGCTTCCGCAACTTTGC;SbPval=0.52;Source=Platypus;TC=75;TCF=45;TCR=30;TR=75;WE=134902406;WS=134902386;set=Platypus	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	134902398	rs10776693	C	T	7196.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	134906347	rs58370938	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.94;MQRankSum=0.792;QD=7.22;ReadPosRankSum=2.450;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr10	134910629	rs11101914	G	A	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr10	134915993	rs7905581	G	C	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	134916121	rs7918862	T	A	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	134981690	rs2998152	T	C	12134.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.701;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.82;ReadPosRankSum=0.200;SOR=0.170;set=HC	GT:AD:AF:DP	1/1:2,468:1.00:470
chr10	134981837	rs2998151	T	C	10829.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr10	134981942	rs3008303	C	T	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	134997480	rs57510763	C	T	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=25.64;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	134997514	rs67800134	A	G	6467.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.507;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.242;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.235;QD=41.46;ReadPosRankSum=1.249;SOR=0.413;set=HC	GT:AD:AF:DP	1/1:1,155:0.99:156
chr10	134997524	rs138319019	T	TCTTG	6434.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.195;MLEAC=2;MLEAF=1.000;MQ=60.45;MQRankSum=0.243;QD=44.69;ReadPosRankSum=1.516;SOR=0.381;set=HC	GT:AD:AF:DP	1/1:1,143:0.99:144
chr10	134999416	.	C	CGGGAGGAGAGGGGAGGGGCGGGAGGGGAGGGGTGGGAGGAGAGGGGAGGGGT	1139.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.208;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=9.622;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=1.616;QD=103.61;ReadPosRankSum=2.965;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:4,7:0.64:11
chr10	134999602	rs3008393	G	C	7526.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr10	135000148	rs3810965	T	C	15987.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr10	135000159	rs3810964	A	G	13891.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:1,533:1.00:534
chr10	135012162	rs2998139	T	C	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	135012429	rs3008390	TT	AC	19850.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr10	135012652	rs3008388	T	C	14451.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:2,570:1.00:572
chr10	135015427	rs9418941	C	A	8396.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	135015667	rs9419023	C	T	16891.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,652:1.00:652
chr10	135016089	rs3008386	T	C	18204.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:1,697:1.00:698
chr10	135016175	rs3008385	T	G	14866.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:1,584:1.00:585
chr10	135020315	rs3008375	T	C	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr10	135032376	rs3008370	A	G	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	135038088	rs11597218	C	T	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	135043802	rs7092433	C	A	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	135061112	rs12355840	C	T	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	135076523	rs2995300	C	A	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	135076596	rs2230576	T	C	6263.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr10	135076758	rs3008318	T	C	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	135076903	rs3121298	A	G	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	135077121	rs3216041	C	CGTCAGCCCCGTGGGGAGGCCGTGCCACT,CGTGCCACT	611.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=12;set=Intersection	GT:AF:DP	1/1:1.00:5
chr10	135077311	rs2995301	C	G	8262.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr10	135077387	rs72864780	G	A	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	135081030	.	G	A	611.77	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	135081684	rs2995309	T	C	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	135081754	rs11101672	G	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	135082346	rs2275720	A	G	21063.77	.	AC=2;AF=1.00;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	1/1:1,834:1.00:835
chr10	135082810	rs2995310	C	T	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	135082874	rs2995311	G	A	9929.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr10	135083164	rs2275719	C	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	135083812	rs885023	C	A	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	135084232	rs5789159	C	CAGA	7225.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	135084322	rs3008321	A	G	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr10	135084601	rs2995314	T	C	14545.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr10	135085321	rs1131720	C	T	6367.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr10	135085426	rs1131719	A	G	11982.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:1,452:1.00:453
chr10	135085754	rs1131718	G	A	21161.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.891;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=1.716;SOR=0.385;set=HC	GT:AD:AF:DP	1/1:1,827:1.00:828
chr10	135086380	rs3008324	C	T	11574.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,443:1.00:443
chr10	135087521	rs3008326	G	A	14279.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr10	135089035	rs2275725	A	G	8441.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr10	135090183	rs2995317	A	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	135093511	rs41299173	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	135096784	rs2995325	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	135097224	rs56403249	T	G	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.90;QD=44.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	135097227	.	CGCA	C,CCA	1447.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=34;set=Intersection	GT:AF:DP	1/1:1.00:33
chr10	135097232	.	T	TCG	1447.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.90;QD=43.87;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	135097434	rs2995326	A	G	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	135098519	rs72864790	G	A	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	135098672	rs3008334	G	A	11429.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,440:1.00:440
chr10	135098830	rs3008335	T	C	15207.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr10	135098845	rs2995327	C	T	14272.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr10	135103311	rs141370078	C	CGCCCGCTGCGCCGCGGACGCCAAGTCCCT	1386.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.97;QD=92.45;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	135105879	.	C	CT	163	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=4;HapScore=4;MGOF=146;MMLQ=23;MQ=44.18;NF=3;NR=0;PP=163;QD=61.3333333333;SC=CTCCGTGTCCCCCGTGTCCCC;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=3;WE=135105897;WS=135105874;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	135105889	.	C	T	310	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=3;HapScore=4;MGOF=146;MMLQ=26;MQ=55.0;NF=9;NR=0;PP=310;QD=38.3079125052;SC=CCCGTGTCCCCGTGTCCCGGG;SbPval=1.0;Source=Platypus;TC=10;TCF=10;TCR=0;TR=9;WE=135105897;WS=135105874;set=Platypus	GT:AD:AF:DP	1/1:1,9:0.90:10
chr10	135105944	.	C	T	1087	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=4;HapScore=1;MGOF=104;MMLQ=23;MQ=60.39;NF=35;NR=14;PP=1087;QD=22.893290052;SC=ACTCCGTGTCCCCCATGTCCC;SbPval=0.75;Source=Platypus;TC=57;TCF=38;TCR=19;TR=49;WE=135105952;WS=135105934;set=Platypus	GT:AD:AF:DP	1/1:8,49:0.86:57
chr10	135107034	rs72864794	G	A	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	135141572	rs2298122	G	T	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	135160950	rs4838721	C	T	13418.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.961;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=1.729;SOR=0.282;set=HC	GT:AD:AF:DP	1/1:1,525:1.00:526
chr10	135165790	rs4369319	A	G	11217.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:3,438:0.99:441
chr10	135171364	rs1891372	T	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	135178087	rs10745294	A	C	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	135179458	rs6537598	G	C	4632.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	135180430	rs2230261	A	G	8409.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	135184126	rs1049951	G	A	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	135186806	rs10466126	A	G	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	135192762	rs12250188	C	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.15;QD=24.55;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	135194890	rs10745295	A	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	135197419	rs4240520	G	A	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	135202594	rs10776679	T	C	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	135204799	rs6537600	C	T	12348.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr10	135204950	rs1046175	C	G	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	135205009	rs1046178	C	G	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	135207936	rs10160083	T	C	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	135209105	rs4838742	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	135211892	rs2252852	A	G	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	135213263	rs2814206	T	C	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	135232934	rs2243619	C	T	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	135233541	rs2255246	A	G	16466.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,649:1.00:649
chr10	135237060	rs2480253	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	135237166	rs2492666	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	135237196	rs4838682	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=25.05;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	135267445	rs2253522	T	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	135267738	rs2253529	T	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr10	135271789	rs2480245	C	T	11225.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr10	135272947	rs2257044	C	A	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	135272947	.	CC	AG	350	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=2;HapScore=2;MGOF=4;MMLQ=27;MQ=60.0;NF=7;NR=3;PP=350;QD=40.3467874862;SC=GGTCCTGGGTCCCTCCCGCTG;SbPval=0.54;Source=Platypus;TC=11;TCF=8;TCR=3;TR=10;WE=135272956;WS=135272937;set=Platypus	GT:AD:AF:DP	1/1:1,10:0.91:11
chr10	135272948	rs2257045	C	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	135273463	rs731947	C	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	135278193	rs2492654	A	G	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	135279283	rs2243812	T	C	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	135279810	rs2243909	T	G	7328.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	135280765	rs2246634	C	T	5119.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	135340866	rs11445593	T	TC	480.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	135347397	rs915909	T	C	7221.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr10	135347533	rs943976	A	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	135350490	rs147973606	A	AGATGGGTGGAT	429.74	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.65;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	135351137	rs2070676	G	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	135351174	rs2070677	T	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	135351362	rs2515641	T	C	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr10	135352153	rs2249694	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	135352168	rs2249695	T	C	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	135352509	rs2480257	T	A	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=1.504;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	135352514	rs2480256	A	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.17;SOR=1.550;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	135369054	rs3020514	A	G	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	135370060	rs2987791	G	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	135371466	rs2987792	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	135372722	rs45439092	A	G	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	135381215	rs3020499	A	G	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	135381276	rs3020500	T	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.25;QD=24.66;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	135381592	rs3020501	C	G	9275.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.14;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr10	135381623	rs3020502	T	C	15128.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.47;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,594:1.00:594
chr10	135381766	rs3020503	C	T	14279.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.680;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;MQRankSum=-0.115;QD=26.25;ReadPosRankSum=0.833;SOR=0.324;set=HC	GT:AD:AF:DP	1/1:1,543:1.00:544
chr10	135381927	rs2987800	T	G	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	135438929	rs201901202	T	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.010;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=54.11;MQRankSum=-14.531;QD=0.62;ReadPosRankSum=-0.889;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:643,83:0.11:726
chr10	135438951	rs200483318	G	A	1560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=55.56;MQRankSum=-16.445;QD=2.17;ReadPosRankSum=3.892;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:632,86:0.12:718
chr10	135438955	rs201563622	C	T	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.681;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=55.79;MQRankSum=-16.429;QD=2.03;ReadPosRankSum=5.948;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:650,82:0.11:732
chr10	135438967	rs145018822	C	T	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0.000;DB;DP=740;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=-18.265;QD=2.00;ReadPosRankSum=6.254;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:654,84:0.11:738
chr10	135438977	rs79631365	G	A	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.694;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-22.203;QD=2.31;ReadPosRankSum=4.414;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:599,82:0.12:681
chr10	135439206	rs199827946	C	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.500;MQ=42.46;MQRankSum=-0.675;QD=1.45;ReadPosRankSum=1.196;SOR=0.049;set=HC	GT:AD:AF:DP	0/1:21,3:0.12:24
chr11	193096	rs2280539	T	C	9531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=1011;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.518;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:507,497:0.50:1004
chr11	193112	rs7951297	C	T	9807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;ClippingRankSum=0.000;DB;DP=1021;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=2.982;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:518,501:0.49:1019
chr11	193194	rs2686896	T	C	3491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.523;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=6.19;ReadPosRankSum=5.692;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:331,233:0.41:564
chr11	193863	rs2294081	T	C	14428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.42;ReadPosRankSum=0.507;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:373,370:0.50:743
chr11	193863	.	TAT	CAG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=26;MQ=60.0;NF=98;NR=105;PP=2944;QD=20;SC=TCAAGTCCTGTATAGATGGCC;SbPval=0.53;Source=Platypus;TC=377;TCF=181;TCR=196;TR=203;WE=193873;WS=193853;set=Platypus	GT:AD:AF:DP	1/0:174,203:0.54:377
chr11	193865	rs2686894	T	G	14422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=0.072;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:372,373:0.50:745
chr11	194323	rs144736936	A	AC	1553.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:101,82:0.45:183
chr11	194598	rs79601819	C	T	3289.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:91,115:0.56:206
chr11	194640	rs2979429	G	A	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:56,60:0.52:116
chr11	197557	rs7103852	A	G	8077.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	207359	rs375304678	C	CGGCCACAGCCGCCTCAGACGT	4537.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.163;QD=26.23;ReadPosRankSum=1.143;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:2,171:0.99:173
chr11	207400	rs71487219	A	G	5298.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.36;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	207462	rs11245998	A	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.34;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	209002	rs2177173	A	G	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	214421	rs3216	G	C	26438.77	.	AC=2;AF=1.00;AN=2;DB;DP=1033;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,1012:1.00:1012
chr11	219089	rs511744	T	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	223976	.	ACTCCTCCCTGCACAGGCCTGCCGACAGCCCATGAGATGACTCCTGTACCCCTCCCTTCCCCTGCCCTCCAGC	A	4638.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=10.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:102,189:0.65:291
chr11	233067	rs11246020	C	T	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	233212	rs11555236	C	A	8963.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:1,340:1.00:341
chr11	233298	rs12365010	T	G	13756.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr11	235894	rs9795476	T	G	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	236343	rs7118852	A	G	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	236370	.	C	CCGGCGCCCCGCCCG	1389.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=6.335;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.365;QD=32.32;ReadPosRankSum=1.647;SOR=2.469;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr11	236871	rs2272563	T	C	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	237087	rs1045288	A	G	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,316:0.99:318
chr11	243987	rs6598060	G	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	244106	rs10902112	A	G	10865.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	244108	rs7107362	A	G	10914.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	244115	rs7128044	G	A	10550.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	244129	rs7116130	C	T	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	244141	rs7128029	G	A	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	244167	rs1128320	C	T	5664.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.59;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	244171	rs1128321	T	C	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	244197	rs1128322	T	C	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	244414	rs2272565	C	T	7301.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	244490	rs3830667	ATACCTTTTAG	A	12852.73	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	244552	rs2272566	A	G	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr11	247200	rs3830001	G	T	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	252318	rs6598055	C	T	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	284093	rs9734280	A	G	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	284538	rs6598047	T	C	21507.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,818:1.00:818
chr11	290816	rs10902120	A	G	7319.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	292798	rs11602423	A	G	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	293001	rs35259273	A	AG	8439.73	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr11	294512	rs149098966	A	ACCCCAGGCTGTCCCTCACCCCCAGACTGCCCTCTCAC	7805.73	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.53;QD=63.46;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	308065	rs9704108	T	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	308363	rs1058935	G	C	10113.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	314207	rs9667990	C	G	26847.77	.	AC=2;AF=1.00;AN=2;DB;DP=1054;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,1028:1.00:1028
chr11	320166	rs28655829	T	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.15;QD=29.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	320237	rs28688930	C	G	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.94;QD=26.87;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	320394	rs6421983	C	T	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	373408	rs376849299	AC	A	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=0.278;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:122,33:0.21:155
chr11	379598	rs1134699	A	G	9139.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr11	380774	rs35355019	A	AC	20435.73	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr11	381560	.	C	T	977	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=4;HapScore=1;MGOF=11;MMLQ=23;MQ=55.99;NF=40;NR=4;PP=977;QD=22.9948002852;SC=CACCTCTCCGCCCCCGGCCCC;SbPval=0.56;Source=Platypus;TC=44;TCF=40;TCR=4;TR=44;WE=381568;WS=381550;set=Platypus	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	396701	rs11246147	C	T	10884.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr11	396915	rs12419281	C	T	12293.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.530;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.94;ReadPosRankSum=0.464;SOR=0.312;set=HC	GT:AD:AF:DP	1/1:1,473:1.00:474
chr11	397706	rs9795298	T	C	4242.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	397732	rs9795299	T	G	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	400109	rs8858	A	G	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	403030	.	CCCGACCCG	C	4669.73	.	AC=2;AF=1.00;AN=2;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.66;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	403040	.	TCACCCC	T	4670.73	.	AC=2;AF=1.00;AN=2;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.60;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	403046	.	C	T	1713	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=3;HapScore=1;MGOF=78;MMLQ=24;MQ=59.44;NF=52;NR=34;PP=1713;QD=20.3229210761;SC=CCGCTCACCCCGACCCCGCCG;SbPval=0.5;Source=Platypus;TC=87;TCF=53;TCR=34;TR=86;WE=403054;WS=403036;set=Platypus	GT:AD:AF:DP	1/1:1,86:0.99:87
chr11	403939	rs7479832	A	G	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:3,273:0.99:276
chr11	403980	rs11748	G	A	10464.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr11	404317	rs1134578	C	T	21410.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,806:1.00:806
chr11	406043	rs7947	G	A	13890.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr11	406473	rs3087588	A	C	22682.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,527:1.00:527
chr11	406483	rs3210908	T	C	21803.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr11	407236	rs7395890	T	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	407366	.	T	TGGGATGGGGCGGGGCGGGGC	2856.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.578;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=6.463;MLEAC=2;MLEAF=1.000;MQ=58.54;MQRankSum=-0.288;QD=54.94;ReadPosRankSum=1.746;SOR=2.565;set=HC	GT:AD:AF:DP	1/1:1,51:0.98:52
chr11	407708	rs6421977	A	C	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	409385	rs6421976	C	G	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	409720	rs6598024	T	G	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr11	409766	rs111715314	C	A	12866.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr11	433387	rs7395065	A	G	22641.77	.	AC=2;AF=1.00;AN=2;DB;DP=879;set=Intersection	GT:AD:AF:DP	1/1:0,869:1.00:869
chr11	460303	rs11821341	T	C	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	486826	rs55653405	C	T	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=44.40;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	486835	rs55976759	G	A	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=46.41;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	486843	rs56352613	A	G	6089.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=46.13;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	486855	rs55961417	T	A	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	487101	rs61876332	C	T	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	487136	rs61876333	G	A	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	489537	rs61876336	C	T	21653.77	.	AC=2;AF=1.00;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	1/1:0,824:1.00:824
chr11	494942	rs7983	G	C	12664.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr11	495103	rs11246165	A	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	498383	rs11825121	C	T	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	499059	rs17584	C	T	29123.77	.	AC=2;AF=1.00;AN=2;DB;DP=1145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,1120:1.00:1120
chr11	499547	rs61876345	A	C	14490.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.03;ReadPosRankSum=-0.685;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:2,577:1.00:579
chr11	499583	rs61876346	G	A	12402.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,488:1.00:488
chr11	500056	rs12417451	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	502013	rs7930593	G	A	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	502217	rs7944548	C	T	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	533415	rs201986435	G	A	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	534242	rs12628	A	G	22845.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.957;ClippingRankSum=0.000;DB;DP=905;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=1.397;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:1,896:1.00:897
chr11	534403	rs146677294	GCCCAGGCCCAGC	G	2997.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	540584	rs11246178	G	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	540604	rs79948463	A	C	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	544827	rs76537666	C	T	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	549959	rs7942030	C	T	16988.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr11	550028	rs11246180	C	G	20501.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	1/1:2,781:1.00:783
chr11	551235	rs35537971	G	A	20144.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	1/1:0,763:1.00:763
chr11	551405	rs7396875	G	A	31677.77	.	AC=2;AF=1.00;AN=2;DB;DP=1243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,1233:1.00:1233
chr11	552547	rs3740652	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	552756	rs12361381	T	C	14221.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr11	552787	rs12361383	T	C	11024.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr11	552875	rs28575794	A	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	554047	rs12793222	G	A	15652.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,609:1.00:609
chr11	554166	rs10902170	C	G	11011.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr11	554214	rs10902171	G	C	18157.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,709:1.00:709
chr11	554299	rs10902172	C	G	16952.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,652:1.00:652
chr11	555182	.	G	GGGAGGGGCGGGGAGGAGAGC	1284.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=59.44;MQRankSum=2.884;QD=40.15;ReadPosRankSum=1.513;SOR=1.539;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr11	555210	.	A	C	210	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=8;HapScore=2;MGOF=91;MMLQ=17;MQ=56.14;NF=7;NR=10;PP=210;QD=14.3983066204;SC=AGCGGAGGGGAGGGGACGAGG;SbPval=0.77;Source=Platypus;TC=66;TCF=32;TCR=34;TR=17;WE=555218;WS=555200;set=Platypus	GT:AD:AF:DP	0/1:49,17:0.26:66
chr11	555223	rs55731724	AC	A	2640.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=38.83;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	556121	rs936467	G	A	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	556457	rs28407128	T	C	11052.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr11	556521	rs28406183	C	G	10189.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr11	556857	rs7938269	G	C	8099.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	557342	rs936466	T	C	7941.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	559016	rs3943356	C	T	16027.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr11	562437	rs11246189	G	A	10160.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr11	582264	rs71022934	CT	C	427.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.574;QD=12.22;ReadPosRankSum=-3.287;SOR=0.148;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr11	606656	rs936470	G	C	8297.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	610277	rs11246212	T	C	11454.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr11	612822	rs34948036	C	CT	3740.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	614864	rs1061501	C	T	35575.77	.	AC=2;AF=1.00;AN=2;DB;DP=1416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,1389:1.00:1389
chr11	616970	rs1610161	A	T	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	617537	rs2740380	C	T	19129.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,748:1.00:748
chr11	617967	rs2740379	C	G	10897.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	618172	rs6598008	A	G	19367.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.21;ReadPosRankSum=1.189;SOR=1.070;set=HC	GT:AD:AF:DP	1/1:2,737:1.00:739
chr11	618998	rs2740375	G	A	6769.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.644;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=3.190;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.98;ReadPosRankSum=-0.695;SOR=0.367;set=HC	GT:AD:AF:DP	1/1:1,270:1.00:271
chr11	619789	rs2246614	T	G	9620.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=0.749;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:2,376:0.99:378
chr11	636496	rs936461	A	G	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	636689	rs747302	G	C	10808.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.48;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	636690	rs936462	G	A	10808.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.66;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	636701	rs3842250	CG	C	5083.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.798;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.134;QD=27.33;ReadPosRankSum=2.794;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:5,181:0.97:186
chr11	636703	rs2396543	G	T	4929.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.342;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.200;QD=26.50;ReadPosRankSum=1.651;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:9,177:0.95:186
chr11	636784	rs1800955	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	639374	rs28540443	C	G	5554.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:9,216:0.96:225
chr11	640119	rs762502	C	T	3455.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.625;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;MQRankSum=-0.061;QD=25.04;ReadPosRankSum=-0.882;SOR=0.326;set=HC	GT:AD:AF:DP	1/1:1,137:0.99:138
chr11	640742	rs372134586	TG	T	1832.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	654091	rs7112962	G	A	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	654165	.	C	CT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-1.573;QD=3.71;ReadPosRankSum=0.541;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr11	674454	rs11246258	G	T	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	674458	rs6597997	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	674499	rs6597996	G	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	679915	rs28392994	G	A	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	685082	.	C	CTTT	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=-0.000;DP=58;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-0.000;QD=14.87;ReadPosRankSum=0.705;SOR=2.258;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr11	686714	rs10794330	G	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	688091	rs12277188	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	691636	rs11246268	G	A	15477.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,599:1.00:599
chr11	694955	.	GGCCGCGGCCGCCGCCGCCACAGCGGCCGCGGCCGCCACCGCC	G	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=4.255;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.708;QD=2.07;ReadPosRankSum=3.169;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:86,12:0.12:98
chr11	698807	rs4963166	C	T	9124.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr11	700247	rs7482162	A	C	12019.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr11	700526	rs34654075	C	CA	383.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.712;QD=10.96;ReadPosRankSum=0.882;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr11	702923	rs5789195	T	TC	1184.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	704583	rs10902201	A	G	32340.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,760:1.00:760
chr11	704604	rs35782494	GA	G	19545.73	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:2,756:1.00:758
chr11	704753	rs7941896	G	A	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	721877	rs74916186	G	C	7809.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	722202	rs9734804	G	C	7853.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	726178	rs28498399	G	C	38885.77	.	AC=2;AF=1.00;AN=2;DB;DP=952;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=41.19;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,944:1.00:944
chr11	726193	rs12796837	G	A	20861.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.025;QD=26.41;ReadPosRankSum=1.194;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:2,788:1.00:790
chr11	726581	rs10902206	T	C	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	726814	rs10902207	C	G	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	752245	.	A	AT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-1.449;QD=4.12;ReadPosRankSum=1.418;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr11	758927	rs34225557	CT	C	7139.73	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	792570	rs145322467	G	A	16312.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,634:1.00:634
chr11	793502	rs79478359	C	T	14840.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,578:1.00:578
chr11	793588	rs80335370	G	A	11350.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr11	799670	rs28649421	G	C	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	801644	rs113521642	A	T	6538.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	802115	rs7479101	A	G	26333.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=1037;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=-0.047;QD=25.77;ReadPosRankSum=0.670;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:4,1018:1.00:1022
chr11	802125	rs28498421	T	C	43819.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.113;ClippingRankSum=0.000;DB;DP=999;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=44.17;ReadPosRankSum=1.656;SOR=0.242;set=HC	GT:AD:AF:DP	1/1:1,991:1.00:992
chr11	802902	rs28360884	T	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	804027	rs77173309	G	A	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	824496	rs76574419	C	G	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	824789	rs1138693	T	C	30263.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,693:1.00:693
chr11	824805	rs1138694	C	T	31736.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	1/1:0,752:1.00:752
chr11	824987	rs66460720	CTGCA	C	24150.73	.	AC=2;AF=1.00;AN=2;DB;DP=615;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=44.72;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,540:1.00:540
chr11	828784	rs28507876	A	G	14526.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr11	828916	rs7126805	G	A	23707.77	.	AC=2;AF=1.00;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr11	829539	rs28558789	A	G	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	830487	rs4075290	C	T	62447.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=2456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=0.187;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:2,2432:1.00:2434
chr11	830670	rs4075289	G	T	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	831122	rs7114218	C	T	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	836008	rs5030778	T	C	8821.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	836023	rs28475448	C	T	10807.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr11	836227	rs28434354	A	G	13545.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr11	836539	rs56063221	TG	T	9693.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:7,363:0.98:370
chr11	836971	rs28620453	G	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	837121	rs28655651	G	C	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	837582	rs1130663	G	A	7309.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	837661	rs56265615	GT	G	1133.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr11	838110	rs5030780	C	T	29006.77	.	AC=2;AF=1.00;AN=2;DB;DP=1146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,1126:1.00:1126
chr11	840319	rs3059	C	T	5213.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.279;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	840363	rs6591	C	T	15720.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,596:1.00:596
chr11	840477	rs4895	A	G	22442.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.992;ClippingRankSum=0.000;DB;DP=863;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.098;QD=26.13;ReadPosRankSum=1.652;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:1,858:1.00:859
chr11	840578	rs34627090	AC	A	8022.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:4,273:0.99:277
chr11	840604	rs28677123	C	G	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	840639	rs28636471	T	A	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	842543	rs28372895	C	G	11619.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=1.261;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr11	842627	rs9705236	T	C	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=2.743;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	842630	rs9704020	C	T	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=2.743;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	842653	rs35249369	C	G	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	849090	rs28402197	C	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	850170	rs28704105	T	G	11297.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr11	862652	rs28505621	T	C	16681.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,649:1.00:649
chr11	864626	rs28377158	A	G	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	865447	rs28423070	G	A	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	865503	rs28581489	G	A	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	866044	rs28457111	A	G	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	866133	rs11246335	G	A	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	866183	rs28439203	T	C	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	866498	rs28663055	T	C	12941.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,505:1.00:505
chr11	900809	rs11246340	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	900894	rs28454252	T	G	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr11	902939	rs12799186	G	A	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	903070	rs28380110	G	C	12854.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	904911	rs28634117	T	C	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	970029	rs7396107	C	T	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	970373	rs7394436	G	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	970405	rs7394427	G	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	972270	rs7933889	C	T	11808.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr11	977036	rs6597960	C	T	11569.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:1,417:1.00:418
chr11	985547	rs10794358	C	T	16939.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr11	992691	rs10902263	G	T	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	993745	rs7104956	C	G	14468.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.16;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,575:1.00:575
chr11	1003523	rs10902264	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	1003642	rs10902265	G	A	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	1007831	rs10902267	T	C	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	1009416	rs7126709	C	T	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	1009589	rs28612764	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	1009622	rs28464902	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	1009890	rs11246380	T	C	6937.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	1010694	rs1128413	C	T	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	1010750	rs1128419	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	1011490	rs7950955	G	A	16233.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr11	1016640	rs111704427	G	A	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=7.737;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-5.892;QD=1.72;ReadPosRankSum=6.991;SOR=1.478;set=HC	GT:AD:AF:DP	0/1:478,59:0.11:537
chr11	1016655	rs77024070	G	A	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=5.773;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-7.166;QD=1.91;ReadPosRankSum=7.719;SOR=1.374;set=HC	GT:AD:AF:DP	0/1:493,63:0.11:556
chr11	1016665	rs77438942	C	T	4526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.984;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-12.064;QD=7.93;ReadPosRankSum=3.149;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:381,190:0.33:571
chr11	1016704	rs75826443	C	A	6208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-6.124;QD=10.97;ReadPosRankSum=-1.780;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:379,187:0.33:566
chr11	1016713	rs76406481	T	C	7220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-7.146;QD=12.99;ReadPosRankSum=-2.973;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:369,187:0.34:556
chr11	1016715	rs78295717	T	C	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-9.203;QD=1.07;ReadPosRankSum=0.983;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:503,50:0.09:553
chr11	1016719	.	T	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DP=584;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-8.308;QD=1.12;ReadPosRankSum=0.839;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:501,55:0.10:556
chr11	1016722	rs144616203	T	G	4703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.774;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=12.779;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-13.798;QD=8.22;ReadPosRankSum=-5.287;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:419,153:0.27:572
chr11	1016724	rs3208810	A	G	11370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=11.823;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-14.516;QD=20.05;ReadPosRankSum=-5.084;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:285,282:0.50:567
chr11	1016742	rs201591120	C	T	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=6.517;QD=2.06;ReadPosRankSum=2.800;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:570,131:0.19:701
chr11	1016776	rs33988517	C	T	13520.77	.	AC=1;AF=0.500;AN=2;DB;DP=1044;set=Intersection	GT:AD:AF:DP	0/1:574,463:0.45:1037
chr11	1016779	.	G	A	1820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DP=1078;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-1.742;QD=1.70;ReadPosRankSum=0.182;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:958,115:0.11:1073
chr11	1016789	rs79968742	T	A	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=1235;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-0.759;QD=1.70;ReadPosRankSum=-0.797;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:1101,129:0.10:1230
chr11	1016795	rs111397691	C	G	1946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DB;DP=1336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-1.433;QD=1.46;ReadPosRankSum=-0.193;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:1189,141:0.11:1330
chr11	1016800	rs199626069	G	A	4386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DB;DP=1407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-9.098;QD=3.14;ReadPosRankSum=3.653;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:1204,193:0.14:1397
chr11	1016802	rs77342817	T	A	1593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=1437;ExcessHet=3.0103;FS=2.142;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=0.343;QD=1.12;ReadPosRankSum=0.533;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:1297,130:0.09:1427
chr11	1016810	rs75998609	G	T	1802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=1553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-0.782;QD=1.17;ReadPosRankSum=-1.253;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:1388,153:0.10:1541
chr11	1016819	rs369828826	G	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=1713;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=0.608;QD=0.07;ReadPosRankSum=-0.947;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:1498,202:0.12:1700
chr11	1016825	.	G	A	1663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;ClippingRankSum=0.000;DP=1895;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=0.030;QD=0.89;ReadPosRankSum=-1.682;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:1677,201:0.11:1878
chr11	1016833	.	G	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DP=2017;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-12.026;QD=0.20;ReadPosRankSum=-3.244;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:1859,142:0.07:2001
chr11	1016834	rs34740154	G	A	8637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DB;DP=2031;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=5.811;QD=4.29;ReadPosRankSum=2.383;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:1587,428:0.21:2015
chr11	1016836	.	A	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DP=2079;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-11.816;QD=0.16;ReadPosRankSum=-3.258;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:1907,153:0.07:2060
chr11	1016869	rs35469308	A	T	31375.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=1786;set=Intersection	GT:AD:AF:DP	0/1:543,981:0.64:1524
chr11	1016870	rs76307106	G	A	1191.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.315;ClippingRankSum=0.000;DB;DP=1785;ExcessHet=3.0103;FS=2.232;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=2.381;QD=0.68;ReadPosRankSum=-3.817;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:1615,144:0.08:1759
chr11	1016871	.	G	T	1159.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DP=1776;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=1.900;QD=0.66;ReadPosRankSum=-3.922;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:1608,143:0.08:1751
chr11	1016890	rs113508205	G	A	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.667;ClippingRankSum=0.000;DB;DP=1554;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-2.270;QD=0.73;ReadPosRankSum=-6.195;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:1359,131:0.09:1490
chr11	1016894	rs34281988	G	A	21372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=1505;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=3.140;QD=14.41;ReadPosRankSum=4.363;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:871,612:0.41:1483
chr11	1016910	rs113559934	G	A	8531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=1351;ExcessHet=3.0103;FS=2.152;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-0.457;QD=6.39;ReadPosRankSum=3.149;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:1037,298:0.22:1335
chr11	1016914	.	G	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=115;MMLQ=22;MQ=54.59;NF=193;NR=230;PP=2962;QD=20;SC=AAGGGTGTGGGTAGCCTGCTG;SbPval=0.6;Source=Platypus;TC=1388;TCF=657;TCR=731;TR=423;WE=1016941;WS=1016900;set=Platypus	GT:AD:AF:DP	0/1:965,423:0.30:1388
chr11	1016916	.	A	G	8701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DP=1276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-11.641;QD=7.05;ReadPosRankSum=0.752;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:960,275:0.22:1235
chr11	1016918	rs34375705	C	T	7742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=1253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=4.197;QD=6.26;ReadPosRankSum=0.627;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:974,263:0.21:1237
chr11	1016928	rs34053383	C	G	34431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=1159;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-9.924;QD=29.94;ReadPosRankSum=-0.018;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:332,818:0.71:1150
chr11	1016928	.	CTGGCC	GTGGCC,GTGGCT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=115;MMLQ=27;MQ=54.32;NF=507,205;NR=607,279;PP=2962,2944;QD=20;SC=CCTGCTGCTGCTGGCCGAGGT;SbPval=0.55;Source=Platypus;TC=1308;TCF=601;TCR=707;TR=1114,484;WE=1016941;WS=1016900;set=Platypus	GT:AF:DP	0/1:0.85:1308
chr11	1016934	.	G	A	7318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;ClippingRankSum=0.000;DP=1132;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-11.396;QD=6.53;ReadPosRankSum=2.520;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:885,236:0.21:1121
chr11	1016957	rs200695483	T	G	6702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DB;DP=995;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-13.282;QD=6.80;ReadPosRankSum=1.271;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:774,211:0.21:985
chr11	1016963	rs76273000	G	T	4266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.440;ClippingRankSum=0.000;DB;DP=945;ExcessHet=3.0103;FS=9.755;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-12.087;QD=4.56;ReadPosRankSum=1.119;SOR=1.578;set=HC	GT:AD:AF:DP	0/1:796,140:0.15:936
chr11	1016968	.	T	C	3022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.540;ClippingRankSum=0.000;DP=909;ExcessHet=3.0103;FS=10.206;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-13.227;QD=3.36;ReadPosRankSum=0.648;SOR=1.698;set=HC	GT:AD:AF:DP	0/1:772,127:0.14:899
chr11	1016972	.	G	A	2887.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.838;ClippingRankSum=0.000;DP=904;ExcessHet=3.0103;FS=8.587;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-15.746;QD=3.36;ReadPosRankSum=0.765;SOR=1.692;set=HC	GT:AD:AF:DP	0/1:745,115:0.13:860
chr11	1016976	rs78728217	T	G	2323.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.357;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=9.025;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-14.746;QD=2.71;ReadPosRankSum=-0.511;SOR=1.716;set=HC	GT:AD:AF:DP	0/1:750,109:0.13:859
chr11	1016977	.	G	A	2239.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.337;ClippingRankSum=0.000;DP=856;ExcessHet=3.0103;FS=9.000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-14.629;QD=2.64;ReadPosRankSum=-0.848;SOR=1.726;set=HC	GT:AD:AF:DP	0/1:742,107:0.13:849
chr11	1016978	.	T	C	2347.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.362;ClippingRankSum=0.000;DP=848;ExcessHet=3.0103;FS=8.928;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-16.035;QD=2.91;ReadPosRankSum=-0.623;SOR=1.606;set=HC	GT:AD:AF:DP	0/1:703,103:0.13:806
chr11	1016984	rs78839362	G	A	3049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.443;ClippingRankSum=0.000;DB;DP=836;ExcessHet=3.0103;FS=8.052;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-18.487;QD=3.68;ReadPosRankSum=-0.031;SOR=1.370;set=HC	GT:AD:AF:DP	0/1:708,121:0.15:829
chr11	1016987	.	G	A	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.442;ClippingRankSum=0.000;DP=815;ExcessHet=3.0103;FS=12.118;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-19.613;QD=1.81;ReadPosRankSum=-1.397;SOR=2.146;set=HC	GT:AD:AF:DP	0/1:694,83:0.11:777
chr11	1017008	.	G	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.007;ClippingRankSum=0.000;DP=785;ExcessHet=3.0103;FS=5.974;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-21.127;QD=0.04;ReadPosRankSum=-4.546;SOR=1.787;set=HC	GT:AD:AF:DP	0/1:725,53:0.07:778
chr11	1017029	rs35621365	T	G	13912.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:306,451:0.60:757
chr11	1017068	rs78992004	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-19.691;QD=0.06;ReadPosRankSum=-7.183;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:706,51:0.07:757
chr11	1017069	rs80333708	G	A	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=765;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=2.561;QD=1.13;ReadPosRankSum=-0.327;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:626,124:0.17:750
chr11	1017074	rs79277162	A	G	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=2.206;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-21.281;QD=0.73;ReadPosRankSum=-6.668;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:685,57:0.08:742
chr11	1017084	rs34649796	G	A	5490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DB;DP=786;ExcessHet=3.0103;FS=2.516;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=6.505;QD=7.13;ReadPosRankSum=3.587;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:469,301:0.39:770
chr11	1017088	rs74990443	A	C	1373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;ClippingRankSum=0.000;DB;DP=787;ExcessHet=3.0103;FS=10.332;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-22.873;QD=1.81;ReadPosRankSum=-5.881;SOR=1.502;set=HC	GT:AD:AF:DP	0/1:680,77:0.10:757
chr11	1017113	rs74202058	T	C	2279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.776;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=7.007;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-23.286;QD=2.79;ReadPosRankSum=1.865;SOR=1.353;set=HC	GT:AD:AF:DP	0/1:710,107:0.13:817
chr11	1017134	rs201950836	G	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.079;ClippingRankSum=0.000;DB;DP=867;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-4.939;QD=0.57;ReadPosRankSum=1.721;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:779,70:0.08:849
chr11	1017135	.	G	A	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DP=863;ExcessHet=3.0103;FS=8.199;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-17.960;QD=1.40;ReadPosRankSum=7.480;SOR=1.580;set=HC	GT:AD:AF:DP	0/1:758,87:0.10:845
chr11	1017154	rs112965257	T	G	8860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.695;ClippingRankSum=0.000;DB;DP=1232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-16.516;QD=7.37;ReadPosRankSum=3.305;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:928,275:0.23:1203
chr11	1017158	rs36143620	G	T	8487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;ClippingRankSum=0.000;DB;DP=1214;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-17.165;QD=7.15;ReadPosRankSum=3.172;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:922,265:0.22:1187
chr11	1017161	rs374837441	C	T	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.679;ClippingRankSum=0.000;DB;DP=1175;ExcessHet=3.0103;FS=4.343;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-7.154;QD=1.49;ReadPosRankSum=1.497;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:1022,125:0.11:1147
chr11	1017169	rs200932890	G	A	1837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.564;ClippingRankSum=0.000;DB;DP=1152;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-8.113;QD=1.63;ReadPosRankSum=0.494;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:1005,121:0.11:1126
chr11	1017173	rs61869004	G	A	3602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=1126;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-1.597;QD=3.26;ReadPosRankSum=3.974;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:838,268:0.24:1106
chr11	1017183	rs34844844	G	T	3680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.182;ClippingRankSum=0.000;DB;DP=1030;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=5.125;QD=3.64;ReadPosRankSum=0.730;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:744,266:0.26:1010
chr11	1017186	rs74579726	A	G	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.397;ClippingRankSum=0.000;DB;DP=1007;ExcessHet=3.0103;FS=4.512;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-9.561;QD=1.36;ReadPosRankSum=-3.751;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:882,102:0.10:984
chr11	1017220	rs56238842	T	C	15667.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:218,409:0.65:627
chr11	1017231	rs35840539	A	G	14525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=4.330;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-11.995;QD=26.85;ReadPosRankSum=-3.208;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:195,346:0.64:541
chr11	1017239	rs56386804	C	T	13587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.318;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-12.402;QD=26.70;ReadPosRankSum=-1.292;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:185,324:0.64:509
chr11	1017240	rs62891761	G	A	7003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=8.254;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-5.749;QD=13.84;ReadPosRankSum=1.755;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:231,275:0.54:506
chr11	1017249	.	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0.000;DP=534;ExcessHet=3.0103;FS=6.032;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-8.272;QD=0.15;ReadPosRankSum=-1.551;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:475,36:0.07:511
chr11	1017273	rs200476918	A	G	1625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=2.809;MLEAC=1;MLEAF=0.500;MQ=56.03;MQRankSum=-8.234;QD=2.85;ReadPosRankSum=-0.969;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:496,74:0.13:570
chr11	1017277	rs111373859	A	G	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.966;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=2.615;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-8.646;QD=3.05;ReadPosRankSum=-1.638;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:511,88:0.15:599
chr11	1017280	rs199539548	G	T	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=640;ExcessHet=3.0103;FS=2.930;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-2.051;QD=1.97;ReadPosRankSum=-1.930;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:547,74:0.12:621
chr11	1017294	rs200241162	A	T	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-2.886;QD=1.95;ReadPosRankSum=-1.561;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:614,99:0.14:713
chr11	1017302	rs35330958	G	C	10179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.419;ClippingRankSum=0.000;DB;DP=830;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-8.527;QD=12.44;ReadPosRankSum=-0.346;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:547,271:0.33:818
chr11	1017307	rs372717767	G	A	3270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.564;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-6.262;QD=3.64;ReadPosRankSum=0.900;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:724,175:0.19:899
chr11	1017317	rs33943903	G	T	13309.77	.	AC=1;AF=0.500;AN=2;DB;DP=1008;set=Intersection	GT:AD:AF:DP	0/1:650,351:0.35:1001
chr11	1017325	rs55903826	A	C	2443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.813;ClippingRankSum=0.000;DB;DP=1128;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=7.318;QD=2.18;ReadPosRankSum=-1.310;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:891,228:0.20:1119
chr11	1017337	rs76686156	T	C	18581.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.229;ClippingRankSum=0.000;DB;DP=1333;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-5.791;QD=14.03;ReadPosRankSum=-0.739;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:822,502:0.38:1324
chr11	1017338	rs78943453	C	A	18545.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=1345;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-5.652;QD=13.89;ReadPosRankSum=-0.394;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:831,504:0.38:1335
chr11	1017372	.	G	A	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DP=1360;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-12.309;QD=0.33;ReadPosRankSum=-0.546;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:1235,105:0.08:1340
chr11	1017381	rs34912894	G	C	3946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.191;ClippingRankSum=0.000;DB;DP=1281;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-26.434;QD=3.13;ReadPosRankSum=-2.251;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:1031,230:0.18:1261
chr11	1017384	rs34095361	G	C	11421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DB;DP=1263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-19.748;QD=9.19;ReadPosRankSum=1.374;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:817,426:0.34:1243
chr11	1017386	.	C	T	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.927;ClippingRankSum=0.000;DP=1252;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-13.902;QD=0.61;ReadPosRankSum=-7.205;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:1131,101:0.08:1232
chr11	1017421	rs35549382	G	T	14729.77	.	AC=1;AF=0.500;AN=2;DB;DP=943;set=Intersection	GT:AD:AF:DP	0/1:545,394:0.42:939
chr11	1017440	rs78729877	C	T	12456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.697;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-12.878;QD=14.78;ReadPosRankSum=-3.847;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:517,326:0.39:843
chr11	1017443	rs80266715	C	G	12278.77	.	AC=1;AF=0.500;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	0/1:503,319:0.39:822
chr11	1017458	.	A	G	5156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.711;ClippingRankSum=0.000;DP=764;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-11.427;QD=7.65;ReadPosRankSum=1.962;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:506,168:0.25:674
chr11	1017461	rs77216712	G	T	3158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=3.612;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-8.951;QD=4.20;ReadPosRankSum=3.427;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:630,122:0.16:752
chr11	1017463	.	TTCTGGTGCCTGTACTGGTGTGGTTGGGGGTGATGCTGGTGGTAGAAGTTGAGGTGACTTCAGGATGGTGTGTGGAGGAAGTGTGTGAATGTAGGGATGTAGAGGTTTTGGCCGTGCTAAATGAGCTTCGGGATTGGCTG	T	608.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.750;ClippingRankSum=0.000;DP=1522;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-7.716;QD=0.41;ReadPosRankSum=-10.492;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1389,114:0.08:1503
chr11	1017464	rs112874139	T	C	3092.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=2.472;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-9.069;QD=4.25;ReadPosRankSum=2.543;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:606,121:0.17:727
chr11	1017466	.	T	A	3336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=0.000;DP=734;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-9.238;QD=4.56;ReadPosRankSum=2.516;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:612,119:0.16:731
chr11	1017470	rs75533660	G	T	3377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=742;ExcessHet=3.0103;FS=3.457;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-11.717;QD=4.57;ReadPosRankSum=0.237;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:611,128:0.17:739
chr11	1017474	.	G	A	3005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348;ClippingRankSum=0.000;DP=746;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-12.990;QD=4.05;ReadPosRankSum=-0.586;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:614,129:0.17:743
chr11	1017483	rs79986665	T	G	2762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-13.519;QD=3.61;ReadPosRankSum=-2.519;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:642,123:0.16:765
chr11	1017489	.	G	A	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DP=742;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-10.841;QD=1.74;ReadPosRankSum=2.040;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:663,76:0.10:739
chr11	1017498	rs76707565	C	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DB;DP=687;ExcessHet=3.0103;FS=6.549;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-10.670;QD=0.99;ReadPosRankSum=-0.402;SOR=1.594;set=HC	GT:AD:AF:DP	0/1:621,64:0.09:685
chr11	1017504	rs201997835	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=9.735;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-12.369;QD=0.56;ReadPosRankSum=-0.425;SOR=2.087;set=HC	GT:AD:AF:DP	0/1:647,53:0.08:700
chr11	1017608	.	ACTGGTGGTCACTGTCATTGGTGGG	A	1681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.653;ClippingRankSum=0.000;DP=887;ExcessHet=3.0103;FS=3.100;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-11.254;QD=1.96;ReadPosRankSum=-10.636;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:766,91:0.11:857
chr11	1017691	rs77359624	C	G	3288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.814;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-6.690;QD=3.12;ReadPosRankSum=-0.787;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:814,240:0.23:1054
chr11	1017746	rs78848170	T	G	5794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=1323;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-17.135;QD=4.42;ReadPosRankSum=4.479;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:1080,230:0.18:1310
chr11	1017767	rs75637734	G	C	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=1276;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=2.340;QD=1.05;ReadPosRankSum=0.813;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:1149,114:0.09:1263
chr11	1017772	rs199757729	C	T	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=1260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=2.136;QD=0.87;ReadPosRankSum=-0.304;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:1139,109:0.09:1248
chr11	1017773	rs57384288	G	A	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=1261;ExcessHet=3.0103;FS=2.055;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-31.227;QD=1.01;ReadPosRankSum=-0.183;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:1135,114:0.09:1249
chr11	1017783	.	A	C	6289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DP=1202;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=0.757;QD=6.28;ReadPosRankSum=-0.514;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:638,364:0.36:1002
chr11	1017789	rs78819924	A	C	2434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=1151;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=4.012;QD=2.13;ReadPosRankSum=3.256;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:910,231:0.20:1141
chr11	1017793	rs77940304	T	G	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=1117;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-26.306;QD=0.36;ReadPosRankSum=-3.275;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:1031,80:0.07:1111
chr11	1017797	rs76800954	C	G	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=1093;ExcessHet=3.0103;FS=4.215;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-25.001;QD=0.15;ReadPosRankSum=-4.022;SOR=1.293;set=HC	GT:AD:AF:DP	0/1:1013,74:0.07:1087
chr11	1017845	rs74610224	C	G	5581.77	.	AC=1;AF=0.500;AN=2;DB;DP=932;set=Intersection	GT:AD:AF:DP	0/1:714,212:0.23:926
chr11	1017858	rs79583615	A	G	5154.77	.	AC=1;AF=0.500;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	0/1:656,178:0.21:834
chr11	1017883	rs79644784	C	A	2629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.368;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-3.534;QD=4.33;ReadPosRankSum=3.376;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:504,104:0.17:608
chr11	1017900	rs77920671	G	T	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.546;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=0.420;QD=3.68;ReadPosRankSum=3.692;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:457,81:0.15:538
chr11	1017921	.	C	T	1820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.825;ClippingRankSum=0.000;DP=451;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=1.969;QD=4.23;ReadPosRankSum=-1.707;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:362,68:0.16:430
chr11	1017932	.	CA	TG	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DP=417;ExcessHet=3.0103;FS=2.489;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-5.352;QD=0.17;ReadPosRankSum=1.205;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:386,30:0.07:416
chr11	1017935	rs138784536	A	G	2101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-2.576;QD=5.62;ReadPosRankSum=-2.070;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:302,72:0.19:374
chr11	1017939	.	G	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DP=389;ExcessHet=3.0103;FS=8.529;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-5.605;QD=0.45;ReadPosRankSum=2.446;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:356,32:0.08:388
chr11	1017941	rs61869007	G	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=8.589;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=2.398;QD=0.71;ReadPosRankSum=-1.396;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:351,32:0.08:383
chr11	1017945	.	A	G	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=2.393;QD=2.78;ReadPosRankSum=-4.960;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:317,42:0.12:359
chr11	1017963	rs61869008	G	A	1747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=11.364;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=4.894;QD=6.03;ReadPosRankSum=-0.942;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:234,56:0.19:290
chr11	1017968	rs61869009	T	A	2084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=11.778;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=5.605;QD=7.39;ReadPosRankSum=-1.404;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:216,66:0.23:282
chr11	1017981	rs61869010	T	A	2595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=17.453;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=7.051;QD=9.51;ReadPosRankSum=-0.056;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:189,84:0.31:273
chr11	1017988	rs112579249	G	T	1894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=9.784;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-4.138;QD=7.07;ReadPosRankSum=-0.482;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:192,76:0.28:268
chr11	1018012	rs10751676	T	G	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.219;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=47.186;MLEAC=1;MLEAF=0.500;MQ=56.65;MQRankSum=-8.354;QD=4.14;ReadPosRankSum=-0.438;SOR=1.616;set=HC	GT:AD:AF:DP	0/1:271,58:0.18:329
chr11	1018024	.	C	G	5862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=1.847;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-1.031;QD=14.40;ReadPosRankSum=0.224;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:264,143:0.35:407
chr11	1018025	rs10751677	C	A	9036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=12.010;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-10.194;QD=21.99;ReadPosRankSum=-3.367;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:197,214:0.52:411
chr11	1018031	rs10751678	G	A	8260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=9.303;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-9.374;QD=19.91;ReadPosRankSum=-1.946;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:209,206:0.50:415
chr11	1018042	rs200364398	A	G	6812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-3.078;QD=15.84;ReadPosRankSum=1.872;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:253,177:0.41:430
chr11	1018048	rs12787400	A	G	7230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.582;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-6.031;QD=16.58;ReadPosRankSum=1.671;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:245,191:0.44:436
chr11	1018059	rs78336072	C	T	7272.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:248,199:0.45:447
chr11	1018116	rs10902269	T	G	8711.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:358,251:0.41:609
chr11	1018138	rs71454075	T	C	8323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-7.840;QD=13.58;ReadPosRankSum=-1.096;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:387,226:0.37:613
chr11	1018144	rs12807084	G	C	8189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-7.948;QD=13.34;ReadPosRankSum=-0.836;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:396,218:0.36:614
chr11	1018169	rs77647814	C	G	5933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-7.840;QD=11.43;ReadPosRankSum=-3.108;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:355,164:0.32:519
chr11	1018175	rs12418172	A	G	5276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-8.274;QD=11.09;ReadPosRankSum=-3.078;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:336,140:0.29:476
chr11	1018182	.	G	T	3626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DP=465;ExcessHet=3.0103;FS=3.942;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-8.407;QD=7.83;ReadPosRankSum=-0.535;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:352,111:0.24:463
chr11	1018186	.	G	T	3269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DP=452;ExcessHet=3.0103;FS=4.026;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-8.204;QD=7.27;ReadPosRankSum=-0.679;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:347,103:0.23:450
chr11	1018192	.	C	T	3125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DP=440;ExcessHet=3.0103;FS=4.095;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-7.798;QD=7.14;ReadPosRankSum=-2.001;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:342,96:0.22:438
chr11	1018196	.	A	T	2837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=4.189;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-7.901;QD=6.49;ReadPosRankSum=-2.751;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:346,91:0.21:437
chr11	1018215	.	G	GCA	1965.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-10.343;QD=4.83;ReadPosRankSum=-4.745;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:341,66:0.16:407
chr11	1018218	.	T	G	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.458;ClippingRankSum=0.000;DP=388;ExcessHet=3.0103;FS=56.601;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-9.097;QD=0.87;ReadPosRankSum=1.226;SOR=4.112;set=HC	GT:AD:AF:DP	0/1:352,33:0.09:385
chr11	1018220	.	T	A	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.805;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=11.355;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-11.562;QD=2.27;ReadPosRankSum=-0.835;SOR=1.489;set=HC	GT:AD:AF:DP	0/1:337,43:0.11:380
chr11	1018222	.	AAT	A	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.718;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=47.138;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-10.719;QD=0.95;ReadPosRankSum=0.511;SOR=3.849;set=HC	GT:AD:AF:DP	0/1:335,32:0.09:367
chr11	1018226	.	T	G	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.517;ClippingRankSum=0.000;DP=375;ExcessHet=3.0103;FS=48.208;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-9.261;QD=1.02;ReadPosRankSum=-0.063;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:339,33:0.09:372
chr11	1018229	rs77630889	C	G	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=15.940;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-13.247;QD=2.16;ReadPosRankSum=0.348;SOR=1.653;set=HC	GT:AD:AF:DP	0/1:339,44:0.11:383
chr11	1018232	rs113063572	G	T	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.074;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-15.540;QD=3.70;ReadPosRankSum=-0.320;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:315,54:0.15:369
chr11	1018237	rs79892432	GT	AG	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.352;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=2.529;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-16.268;QD=3.55;ReadPosRankSum=-0.557;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:309,55:0.15:364
chr11	1018245	rs76423553	TT	GC	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.850;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=4.258;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-16.371;QD=5.59;ReadPosRankSum=-0.482;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:298,54:0.15:352
chr11	1018262	rs78003962	GT	CG	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-13.349;QD=2.93;ReadPosRankSum=-4.691;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:330,52:0.14:382
chr11	1018279	.	C	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-6.010;QD=0.19;ReadPosRankSum=1.196;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:348,27:0.07:375
chr11	1018290	.	G	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DP=412;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-6.172;QD=0.29;ReadPosRankSum=1.535;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:362,30:0.08:392
chr11	1018291	.	G	C	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.606;ClippingRankSum=0.000;DP=413;ExcessHet=3.0103;FS=4.071;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-8.207;QD=2.91;ReadPosRankSum=-0.400;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:356,52:0.13:408
chr11	1018295	rs73403297	T	C	2984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=8.489;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-12.843;QD=7.32;ReadPosRankSum=0.517;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:306,102:0.25:408
chr11	1018303	.	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.33;MQRankSum=-5.742;QD=0.16;ReadPosRankSum=2.135;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:389,31:0.07:420
chr11	1018313	rs75499910	G	T	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.554;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-9.160;QD=2.35;ReadPosRankSum=0.723;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:366,50:0.12:416
chr11	1018316	rs201954368	G	A	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.466;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=7.413;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-8.045;QD=1.09;ReadPosRankSum=4.802;SOR=1.504;set=HC	GT:AD:AF:DP	0/1:359,48:0.12:407
chr11	1018329	.	T	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DP=394;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-6.960;QD=0.84;ReadPosRankSum=1.592;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:344,44:0.11:388
chr11	1018340	rs77556339	T	C	1027.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.519;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=3.635;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-9.993;QD=2.98;ReadPosRankSum=0.669;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:296,49:0.14:345
chr11	1018341	rs79748612	G	A	1030.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.219;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=4.540;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-10.014;QD=2.98;ReadPosRankSum=0.560;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:297,49:0.14:346
chr11	1018385	rs7396380	T	A	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.241;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=14.034;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-14.166;QD=8.11;ReadPosRankSum=-0.066;SOR=1.571;set=HC	GT:AD:AF:DP	0/1:159,55:0.26:214
chr11	1018390	rs111785507	C	A	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=22.330;MLEAC=1;MLEAF=0.500;MQ=56.04;MQRankSum=-11.330;QD=4.99;ReadPosRankSum=-0.724;SOR=2.280;set=HC	GT:AD:AF:DP	0/1:171,38:0.18:209
chr11	1018399	.	C	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-6.363;QD=0.43;ReadPosRankSum=1.302;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:191,16:0.08:207
chr11	1018456	rs79920422	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.898;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-9.060;QD=0.51;ReadPosRankSum=5.998;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:166,24:0.13:190
chr11	1018483	rs78265558	C	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=5.324;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-11.171;QD=1.03;ReadPosRankSum=5.080;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:235,24:0.09:259
chr11	1018496	rs67341709	G	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=5.334;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-11.029;QD=0.62;ReadPosRankSum=1.839;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:264,24:0.08:288
chr11	1019375	rs9704308	C	T	14138.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr11	1027811	rs7481521	C	T	11486.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr11	1033240	rs61869016	T	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	1036454	rs116996199	G	A	8061.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	1075092	rs41369349	G	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	1075850	rs11825969	G	A	20027.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,756:1.00:756
chr11	1075920	rs11825977	G	A	10801.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr11	1077493	rs34367348	C	T	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	1078393	rs7104590	T	C	18628.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,722:1.00:722
chr11	1078752	rs41500945	C	T	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	1078763	rs11245922	TT	GG	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=45.90;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	1078787	rs61870062	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;QD=43.66;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	1079532	.	C	CT	578	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=1;HapScore=1;MGOF=85;MMLQ=27;MQ=57.5;NF=10;NR=5;PP=578;QD=40.7333333333;SC=GGGACACTCACCACGCCGGGC;SbPval=0.6;Source=Platypus;TC=15;TCF=10;TCR=5;TR=15;WE=1079545;WS=1079524;set=Platypus	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	1079534	.	ACGCC	A	742	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=3;HapScore=1;MGOF=85;MMLQ=24;MQ=57.89;NF=9;NR=5;PP=742;QD=55.3571428571;SC=GACACTCACCACGCCGGGCAC;SbPval=0.58;Source=Platypus;TC=14;TCF=9;TCR=5;TR=14;WE=1079545;WS=1079524;set=Platypus	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	1079809	rs10902081	C	T	9709.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	1079879	rs7127117	T	C	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	1082582	rs7952257	G	A	22732.77	.	AC=2;AF=1.00;AN=2;DB;DP=893;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,884:1.00:884
chr11	1086163	rs7926689	C	A	24996.77	.	AC=2;AF=1.00;AN=2;DB;DP=978;set=Intersection	GT:AD:AF:DP	1/1:2,940:1.00:942
chr11	1090501	rs35179278	C	A	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	1093710	rs7944723	C	G	66562.77	.	AC=2;AF=1.00;AN=2;DB;DP=2621;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,2574:1.00:2574
chr11	1101649	rs7480563	T	C	10380.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr11	1103137	rs11245955	G	A	10037.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr11	1103477	rs11245956	C	T	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	1103786	rs9988872	A	G	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	1104520	rs137871940	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	1154073	rs33962059	A	AC	2132.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	1158073	rs28691231	T	C	26658.77	.	AC=2;AF=1.00;AN=2;DB;DP=1029;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,1023:1.00:1023
chr11	1158834	rs28433367	C	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	1159133	rs35917282	G	A	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	1159150	rs28542750	A	T	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	1161315	rs28403537	T	C	13829.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr11	1162017	rs75423548	C	T	47672.77	.	AC=2;AF=1.00;AN=2;DB;DP=1849;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,1826:1.00:1826
chr11	1213245	rs67624660	T	A	130368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.345;ClippingRankSum=0.000;DB;DP=5186;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.951;QD=26.07;ReadPosRankSum=-3.501;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:1611,3389:0.68:5000
chr11	1213256	rs370028072	C	T	13104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.717;ClippingRankSum=0.000;DB;DP=4859;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.171;QD=2.79;ReadPosRankSum=4.230;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:3683,1009:0.22:4692
chr11	1213257	rs76779582	T	C	133896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.654;ClippingRankSum=0.000;DB;DP=4777;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.672;QD=29.04;ReadPosRankSum=-4.124;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:1465,3146:0.68:4611
chr11	1213259	rs75991767	T	G	131917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.022;ClippingRankSum=0.000;DB;DP=4779;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.664;QD=28.60;ReadPosRankSum=-4.420;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:1456,3157:0.68:4613
chr11	1213264	rs72846341	G	A	131515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.247;ClippingRankSum=0.000;DB;DP=4711;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.660;QD=28.92;ReadPosRankSum=-3.827;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:1430,3118:0.69:4548
chr11	1213272	rs78252457	A	C	104239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.912;ClippingRankSum=0.000;DB;DP=4694;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.841;QD=22.94;ReadPosRankSum=3.706;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:1912,2632:0.58:4544
chr11	1213275	rs71251383	G	A	19880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.504;ClippingRankSum=0.000;DB;DP=4680;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.600;QD=4.38;ReadPosRankSum=3.631;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:3771,764:0.17:4535
chr11	1213281	rs75618268	C	T	104372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.036;ClippingRankSum=0.000;DB;DP=4642;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.358;QD=23.17;ReadPosRankSum=2.207;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:1935,2569:0.57:4504
chr11	1213284	rs200981907	C	T	19690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.009;ClippingRankSum=0.000;DB;DP=4655;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.611;QD=4.35;ReadPosRankSum=2.773;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:3768,758:0.17:4526
chr11	1213287	rs112774721	G	A	26733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=4678;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.849;QD=5.87;ReadPosRankSum=1.214;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:3607,946:0.21:4553
chr11	1213293	rs77207494	C	T	61044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=4689;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.225;QD=13.35;ReadPosRankSum=0.301;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:2952,1620:0.35:4572
chr11	1213296	rs78466479	A	G	12468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=4706;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-4.160;QD=2.71;ReadPosRankSum=-1.354;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:3895,701:0.15:4596
chr11	1213302	rs371630624	T	C	19912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=4742;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-3.470;QD=4.30;ReadPosRankSum=-0.092;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:3888,748:0.16:4636
chr11	1213311	rs80058880	C	T	23869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.107;ClippingRankSum=0.000;DB;DP=4787;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.678;QD=5.10;ReadPosRankSum=0.280;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:3848,829:0.18:4677
chr11	1213314	rs73395695	C	T	92604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;ClippingRankSum=0.000;DB;DP=4796;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.997;QD=19.76;ReadPosRankSum=0.405;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:2215,2471:0.53:4686
chr11	1213317	rs76191775	G	A	22174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.899;ClippingRankSum=0.000;DB;DP=4798;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.006;QD=4.73;ReadPosRankSum=0.746;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:3821,869:0.19:4690
chr11	1213405	rs67262263	G	A	62834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0.000;DB;DP=4423;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.284;QD=14.32;ReadPosRankSum=4.260;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:2355,2034:0.46:4389
chr11	1213416	rs78511643	G	A	20960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=4170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.434;QD=5.06;ReadPosRankSum=2.739;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:2857,1286:0.31:4143
chr11	1213424	rs61867531	A	G	102625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=3918;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.124;QD=26.39;ReadPosRankSum=6.103;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:784,3105:0.80:3889
chr11	1213428	rs61867532	T	C	83290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=3828;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.742;QD=21.95;ReadPosRankSum=4.303;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:1433,2362:0.62:3795
chr11	1213440	rs61867533	T	C	116605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.141;ClippingRankSum=0.000;DB;DP=3533;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.891;QD=33.23;ReadPosRankSum=5.352;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:734,2775:0.79:3509
chr11	1213460	rs200307483	G	A	9486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=3191;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.00;ReadPosRankSum=2.214;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:2734,428:0.14:3162
chr11	1213461	rs61867534	T	G	30348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=3169;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.07;ReadPosRankSum=0.212;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:1277,1465:0.53:2742
chr11	1213533	rs73395699	C	T	22544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0.000;DB;DP=2501;ExcessHet=3.0103;FS=20.598;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-15.451;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:1259,1168:0.48:2427
chr11	1215271	rs71025716	GA	G	2589.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	1215698	rs28452143	A	G	16619.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.228;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=25.41;ReadPosRankSum=1.132;SOR=0.229;set=HC	GT:AD:AF:DP	1/1:1,653:1.00:654
chr11	1216316	rs58550179	G	GC	38811.73	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:0,875:1.00:875
chr11	1216333	rs60138698	TA	T	37883.73	.	AC=2;AF=1.00;AN=2;DB;DP=853;set=Intersection	GT:AD:AF:DP	1/1:0,841:1.00:841
chr11	1216440	rs28415193	G	C	60043.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0.000;DB;DP=1632;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=0.763;QD=37.18;ReadPosRankSum=12.119;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:81,1534:0.95:1615
chr11	1216491	rs1132434	G	C	55064.77	.	AC=2;AF=1.00;AN=2;DB;DP=1356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=40.97;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,1344:1.00:1344
chr11	1217228	rs28592983	T	C	17113.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	1/1:2,676:1.00:678
chr11	1218143	rs28515631	A	C	12787.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr11	1220967	rs1132436	C	T	12220.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	1221592	rs28728088	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	1221817	rs1132440	G	C	11735.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr11	1248491	rs908223	T	G	9582.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr11	1253942	rs908229	T	C	4004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.809;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=9.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=0.904;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:539,246:0.31:785
chr11	1253969	rs72846370	A	G	5698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.926;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-2.488;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:423,175:0.29:598
chr11	1253976	rs76956995	A	G	5484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-4.729;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:368,154:0.30:522
chr11	1253980	rs202127660	A	G	4817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=3.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-4.980;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:348,137:0.28:485
chr11	1258175	rs80092233	C	T	13028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.185;ClippingRankSum=0.000;DB;DP=1615;ExcessHet=3.0103;FS=21.400;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-7.067;SOR=1.966;set=HC	GT:AD:AF:DP	0/1:1199,389:0.24:1588
chr11	1258192	rs76589014	A	T	14995.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.009;ClippingRankSum=0.000;DB;DP=1776;ExcessHet=3.0103;FS=13.144;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.58;ReadPosRankSum=4.202;SOR=1.610;set=HC	GT:AD:AF:DP	0/1:1307,441:0.25:1748
chr11	1258193	rs74904842	T	C	15037.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.792;ClippingRankSum=0.000;DB;DP=1779;ExcessHet=3.0103;FS=13.144;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.59;ReadPosRankSum=4.639;SOR=1.594;set=HC	GT:AD:AF:DP	0/1:1309,442:0.25:1751
chr11	1258197	rs78674028	A	G	15157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.815;ClippingRankSum=0.000;DB;DP=1765;ExcessHet=3.0103;FS=11.402;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.72;ReadPosRankSum=4.921;SOR=1.539;set=HC	GT:AD:AF:DP	0/1:1287,451:0.26:1738
chr11	1258199	rs80200632	C	T	15733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.328;ClippingRankSum=0.000;DB;DP=1758;ExcessHet=3.0103;FS=12.810;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.09;ReadPosRankSum=5.004;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:1277,453:0.26:1730
chr11	1258217	rs74648489	T	G	17273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.175;ClippingRankSum=0.000;DB;DP=1643;ExcessHet=3.0103;FS=10.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=2.193;SOR=1.427;set=HC	GT:AD:AF:DP	0/1:1135,489:0.30:1624
chr11	1258226	rs55700357	C	T	17877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.813;ClippingRankSum=0.000;DB;DP=1582;ExcessHet=3.0103;FS=10.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.847;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:1075,491:0.31:1566
chr11	1258240	rs77287508	CA	TG	17748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.145;ClippingRankSum=0.000;DB;DP=1428;ExcessHet=3.0103;FS=6.444;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=0.831;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:943,473:0.33:1416
chr11	1258283	rs78669250	G	A	16269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;ClippingRankSum=0.000;DB;DP=1182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=1.170;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:733,441:0.38:1174
chr11	1258286	rs77996005	C	T	16427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;ClippingRankSum=0.000;DB;DP=1166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=0.948;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:721,437:0.38:1158
chr11	1258295	rs79118814	A	G	16047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;ClippingRankSum=0.000;DB;DP=1143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=0.259;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:701,432:0.38:1133
chr11	1271309	.	C	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DP=919;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.43;MQRankSum=-3.794;QD=0.43;ReadPosRankSum=0.738;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:794,120:0.13:914
chr11	1304706	rs3838783	TG	T	1926.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	1309956	rs3750920	C	T	23338.77	.	AC=2;AF=1.00;AN=2;DB;DP=919;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,897:1.00:897
chr11	1411501	rs112066837	C	T	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	1462162	rs61002819	AG	A	8477.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	1462217	rs9651643	C	T	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	1464131	rs12293991	G	A	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	1464903	rs56896587	CG	C	3651.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	1466720	rs3817589	G	A	9967.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	1471154	rs11028332	C	T	9257.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr11	1472050	rs61869028	A	G	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr11	1472475	rs3838784	TG	T	9310.73	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	1475628	rs66529968	C	T	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	1477768	rs67861777	C	T	22395.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,850:1.00:850
chr11	1481610	rs28555282	T	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	1481690	.	CCTTT	C,CT	4385.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;QD=32.73;SOR=1.557;set=HC	GT:AD:AF:DP	1/2:1,48,85:0.36,0.63:134
chr11	1481930	rs4963048	A	G	1524.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.29;ReadPosRankSum=-0.209;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:1,57:0.98:58
chr11	1481962	rs34875491	GC	G	842.82	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:6,39:0.87:45
chr11	1491096	rs9440	G	A	26952.77	.	AC=2;AF=1.00;AN=2;DB;DP=1069;set=Intersection	GT:AD:AF:DP	1/1:0,1043:1.00:1043
chr11	1492445	rs4881724	A	G	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	1501670	rs10742185	G	C	16216.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr11	1502097	rs10767696	A	G	8793.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	1502401	rs4881735	A	C	8227.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	1507512	rs1881502	T	C	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	1507731	rs1881503	A	G	19598.77	.	AC=2;AF=1.00;AN=2;DB;DP=780;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,773:1.00:773
chr11	1509238	rs2334554	T	C	32278.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=1289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;MQRankSum=0.060;QD=25.38;ReadPosRankSum=-1.482;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:2,1270:1.00:1272
chr11	1509421	rs2334553	G	A	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	1576005	rs59483236	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	1576137	rs11604635	C	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	1576235	rs6578504	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	1576283	rs11603496	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	1576863	rs12576976	A	G	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	1578090	rs7129499	G	A	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	1585277	rs3740620	C	T	13897.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=-0.091;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:2,536:1.00:538
chr11	1605904	.	T	TCCCCCACAAGAACCGCAGCCCCCCTTGCAGCCTCCACAGGAGCCACAGCCCCCCTTGGAG	1488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DP=649;ExcessHet=3.0103;FS=16.628;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-0.895;QD=10.56;ReadPosRankSum=0.343;SOR=6.091;set=HC	GT:AD:AF:DP	0/1:57,84:0.60:141
chr11	1606120	.	ACCACAGCCACCCTTGGATCCCCCACAAGAG	A	13526.73	.	AC=2;AF=1.00;AN=2;DP=409;set=Intersection	GT:AD:AF:DP	1/1:3,332:0.99:335
chr11	1619172	.	ACCCCCACAGGAGCCACAGCCCCCCTTGGAG	A	7456.73	.	AC=2;AF=1.00;AN=2;DP=708;set=Intersection	GT:AD:AF:DP	1/1:4,282:0.99:286
chr11	1628844	rs1989592	A	G	14075.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr11	1628965	rs57186801	G	A	47856.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.626;ClippingRankSum=0.000;DB;DP=1217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;MQRankSum=-0.265;QD=39.45;ReadPosRankSum=2.292;SOR=0.113;set=HC	GT:AD:AF:DP	1/1:2,1211:1.00:1213
chr11	1628992	rs60210378	G	A	45035.77	.	AC=2;AF=1.00;AN=2;DB;DP=1104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=41.09;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,1096:1.00:1096
chr11	1630342	rs10837527	T	A	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	1756681	rs7943617	G	A	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	1770224	rs111693235	C	G	13467.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr11	1771797	rs3740621	T	C	14378.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr11	1774757	rs138733377	G	T	24217.77	.	AC=2;AF=1.00;AN=2;DB;DP=935;set=Intersection	GT:AD:AF:DP	1/1:1,916:1.00:917
chr11	1776024	rs55725229	TC	T	2942.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	1857042	rs907605	G	T	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	1857173	rs564271	T	C	12552.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr11	1858262	rs484955	C	T	19603.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr11	1861760	rs907610	T	C	6408.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	1874221	rs907612	C	T	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	1880730	rs75966923	C	A	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	1880811	rs571122	G	A	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	1890990	rs592373	G	A	6535.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	1891035	rs61278563	G	GA	3221.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	1891599	rs7929436	A	C	8151.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	1901467	rs2271439	A	C	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	1905292	rs661348	T	C	29863.77	.	AC=2;AF=1.00;AN=2;DB;DP=1183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.52;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,1170:1.00:1170
chr11	1944050	rs370860604	CCT	C	1009.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=1040;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.759;QD=1.04;ReadPosRankSum=-0.803;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:852,118:0.12:970
chr11	1961701	.	TCTCACACA	T	1386.73	.	AC=2;AF=1.00;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	1961869	rs11041941	T	C	7468.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	1968490	rs190924294	C	T	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	1971977	rs477940	A	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	1973205	rs217205	T	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	1976988	rs177720	A	G	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr11	1977651	rs116624254	C	A	4190.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:157,174:0.53:331
chr11	1993975	rs190063	C	A	7711.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	2156536	rs3213225	G	A	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	2167618	rs1003484	A	G	11977.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr11	2169110	rs3741211	A	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	2181073	rs3842752	G	A	8530.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	2182004	rs5506	A	G	8638.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr11	2186459	rs371566928	C	G	17433.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,681:1.00:681
chr11	2187071	rs6578990	T	C	8328.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	2187398	rs4072823	T	G	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	2187855	rs12419447	G	C	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	2188238	rs6357	C	T	6374.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.521;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=3.474;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=0.600;SOR=0.573;set=HC	GT:AD:AF:DP	1/1:1,246:1.00:247
chr11	2188566	rs7925924	C	T	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	2189983	rs4930043	C	T	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	2194175	rs10743149	T	C	8168.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr11	2321042	.	ATGCACACACATCCACGTCTGCACACGCATCCACGCC	A	351.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	2322829	rs11022157	C	A	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	2323022	rs12276847	C	T	60684.77	.	AC=2;AF=1.00;AN=2;DB;DP=1397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,1371:1.00:1371
chr11	2323029	rs756924	T	C	61109.77	.	AC=2;AF=1.00;AN=2;DB;DP=1397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,1374:1.00:1374
chr11	2323528	rs2074021	T	C	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr11	2324041	rs2074022	A	G	12558.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr11	2324692	rs1501467	C	T	11991.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr11	2324852	rs2651824	A	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	2329880	rs12796957	G	C	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.33;QD=42.29;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	2329894	rs34400624	GC	G	1534.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;QD=35.69;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	2329995	rs11554947	C	T	13849.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.09;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,552:1.00:552
chr11	2330077	rs2234297	C	G	8676.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	2330400	rs2521273	G	A	4609.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	2330479	rs2521274	G	A	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	2330563	rs2521275	C	T	9327.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=3.058;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=0.580;SOR=0.267;set=HC	GT:AD:AF:DP	1/1:1,363:1.00:364
chr11	2334740	rs739546	G	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	2337012	rs11022252	G	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	2356603	rs2651795	T	C	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	2356769	rs2651794	T	C	18175.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.23;QD=26.77;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,679:1.00:679
chr11	2357108	rs2173888	C	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	2400338	rs2651796	C	G	9389.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr11	2405766	rs145228369	GGGTGGGGCATCTCGGGA	G	958.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	2407084	rs71029143	G	GT	16017.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.151;QD=25.51;ReadPosRankSum=-0.927;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:2,626:1.00:628
chr11	2424684	rs2234283	A	C	8988.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	2426984	rs2301696	G	C	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	2427291	rs800342	A	C	33969.77	.	AC=2;AF=1.00;AN=2;DB;DP=1339;set=Intersection	GT:AD:AF:DP	1/1:2,1312:1.00:1314
chr11	2427364	rs61873460	T	C	21814.77	.	AC=2;AF=1.00;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	1/1:1,836:1.00:837
chr11	2428341	rs11022676	G	A	1532.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	2429032	rs145871474	C	A	15864.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr11	2432820	rs2651822	A	G	14839.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr11	2435303	.	G	A	6544.77	.	AC=2;AF=1.00;AN=2;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	2435910	rs76270811	G	GC	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=47.51;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	2435931	rs4929980	C	T	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=48.14;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	2435946	rs4929981	A	G	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=44.80;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	2435956	rs4929982	C	T	6833.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=39.73;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	2437185	rs34599318	C	T	16530.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.736;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.75;ReadPosRankSum=0.767;SOR=0.251;set=HC	GT:AD:AF:DP	1/1:1,641:1.00:642
chr11	2437376	rs141432890	TGAG	T	1399.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	2439542	rs3986599	A	G	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr11	2439621	rs2074236	A	T	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	2439651	rs886276	G	T	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	2439672	rs147746598	T	TC	4527.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	2439767	rs886277	T	C	11724.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.164;QD=25.60;ReadPosRankSum=1.369;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:2,456:1.00:458
chr11	2439876	rs886278	G	A	8451.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	2440041	rs4244810	T	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	2441686	rs35998237	T	TG	2881.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	2542605	rs10400376	TA	GG	11813.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	2549329	rs145292450	TGG	T	4878.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	2683357	rs760419	A	G	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	2789856	rs163161	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	2797320	rs163150	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	2798448	rs163148	A	G	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.98;SOR=1.958;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	2868878	rs3852520	T	C	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	2905204	rs34289096	G	GC	10298.73	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:6,419:0.99:425
chr11	2906804	rs143992355	C	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	2920666	rs365605	C	T	12366.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr11	2920764	rs74840067	G	A	11136.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr11	2924610	rs1048047	G	A	15843.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr11	2924850	rs34816459	T	TC	5026.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	2929552	rs429886	A	G	7499.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	2929659	rs424663	G	A	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	2930594	rs67769451	CG	C	5637.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=6.688;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.283;QD=30.81;ReadPosRankSum=2.169;SOR=0.406;set=HC	GT:AD:AF:DP	1/1:2,181:0.99:183
chr11	2930656	rs2286660	T	G	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	2939392	rs445679	G	A	20639.77	.	AC=2;AF=1.00;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	1/1:1,795:1.00:796
chr11	2940492	rs450244	T	C	10750.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr11	2943671	rs1129782	G	C	13121.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	2943912	rs2411773	GT	AG	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=44.39;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	2943916	rs2411771	A	T	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=47.49;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	2943921	rs1618222	A	G	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=47.29;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	2946522	rs3764896	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	2973159	rs2071117	G	A	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	2975987	rs2073581	A	G	15372.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,611:1.00:611
chr11	2979798	rs7940694	G	T	11930.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr11	2997485	rs2277298	G	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	3000330	rs11826983	G	T	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	3000395	rs10488674	C	T	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	3026692	rs4758458	T	G	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	3026712	rs7931504	C	T	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	3028270	rs7950766	A	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	3036933	rs2071104	G	T	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	3048140	rs494427	A	G	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	3061949	rs2285390	C	A	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	3076018	rs7934892	T	C	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.35;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	3076257	rs7945933	C	T	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	3078536	rs4758463	C	G	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	3108506	rs8813	G	A	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	3109279	rs11553374	G	A	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	3109284	rs3217567	G	GC	1487.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	3109403	rs2289999	A	G	11604.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=44.81;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	3109408	rs2289998	C	T	11653.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=43.65;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	3109426	rs10160757	T	C	7647.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=24.43;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	3110976	rs895563	A	G	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	3111866	rs2277301	C	T	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	3113596	rs113239327	C	T	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	3115354	rs9795009	T	C	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	3121248	rs71035481	C	CA	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=5.27;ReadPosRankSum=1.231;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:26,33:0.56:59
chr11	3128774	rs3741353	T	C	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	3242833	rs7929163	G	C	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	3242907	rs11602794	G	A	6189.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	3242933	rs10833491	C	T	7871.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	3243346	rs11026004	C	T	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	3243367	rs12280457	G	T	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	3243427	rs12275900	T	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	3249984	rs12295710	C	T	8373.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	3361087	rs2073805	T	C	8563.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	3381843	rs2157763	A	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	3382069	rs6578335	C	G	6191.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	3382215	rs6578336	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	3383962	rs10734319	T	C	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	3388293	.	TAAA	T	83.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.86;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr11	3390006	rs7943767	T	C	6171.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	3390173	rs1989786	A	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	3390547	rs7925972	G	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	3392351	rs2269735	T	C	12073.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=1.381;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	3392357	rs2269734	T	G	11749.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=1.443;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	3392972	rs2269732	G	A	16218.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr11	3394894	rs10833820	G	A	9908.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr11	3394960	rs10833821	A	G	8227.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	3398760	rs7932709	G	T	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	3398795	rs7932797	G	A	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	3400334	rs7931660	A	G	7831.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	3400422	rs6578342	C	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	3661140	rs4910876	T	C	16652.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr11	3661585	rs3062849	A	ATGG	17826.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=804;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.081;QD=25.87;ReadPosRankSum=0.116;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:2,687:1.00:689
chr11	3662892	rs72844325	G	T	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	3663170	rs7111519	G	C	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	3681519	rs2280134	T	C	16130.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr11	3682720	.	C	CTTTT	193.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=24.15;ReadPosRankSum=1.534;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr11	3704775	rs35532049	CT	C	514.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr11	3756559	.	T	TA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-1.606;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr11	3756581	rs370033397	AAT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.346;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr11	3829419	rs2278845	G	C	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	3838910	rs7946577	G	C	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	3838953	rs10835147	T	C	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	3839292	rs112928434	T	TAA	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=1.387;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr11	4103524	rs2304891	A	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	4104060	rs2898950	A	C	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	4104087	rs10767828	T	C	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	4104355	rs894455	T	C	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	4104745	rs2289570	C	G	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	4116335	rs12801088	A	C	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	4123345	rs1348310	C	G	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	4123427	rs232054	C	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	4126808	rs55705631	C	CT,CTT	538.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.358;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=-0.856;SOR=0.595;set=HC	GT:AD:AF:DP	1/2:1,13,15:0.45,0.52:29
chr11	4128845	rs725518	G	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	4133317	rs56336381	C	A	6734.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,261:1.00:262
chr11	4141132	rs183484	C	A	7660.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,307:1.00:308
chr11	4153767	rs10835662	A	G	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	4159457	rs9937	A	G	6717.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=1.441;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	4159466	rs1042858	G	A	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.21;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	4159764	rs1042919	A	T	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	4159770	rs866902	AT	A	64.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	4185766	rs7948314	G	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	4388905	rs11031960	C	T	10811.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr11	4389587	rs7929171	G	C	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	4389639	rs4910623	G	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	4409386	rs2554933	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	4409511	rs12805578	A	G	5507.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	4410752	rs2855142	C	T	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	4510285	rs96489	A	G	10664.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr11	4510342	rs138616789	T	C	8240.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	4510587	rs331510	C	T	28688.77	.	AC=2;AF=1.00;AN=2;DB;DP=1117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=26.08;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,1100:1.00:1100
chr11	4562831	rs2657172	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=25.42;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	4562947	rs2641414	G	T	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.35;QD=25.98;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	4562970	rs67163911	A	ATTT	2958.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.83;QD=42.27;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	4566377	rs2657168	C	T	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	4566711	rs2709182	C	T	10364.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:2,403:1.00:405
chr11	4567335	rs2657167	C	G	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	4592706	rs141600462	T	TAC	10259.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	4592923	.	CAA	C	696.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.80;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	4594739	rs919519	C	T	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	4608542	rs1847632	C	T	16910.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:1,649:1.00:650
chr11	4615390	rs2010722	C	T	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.63;QD=28.19;SOR=2.006;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	4615508	rs2010719	C	G	14792.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.97;QD=25.73;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,575:1.00:575
chr11	4621485	rs2231978	C	G	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	4622159	rs2231972	T	C	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	4623788	rs931811	T	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	4703165	rs1123991	C	A	13389.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr11	4730985	rs4619142	C	T	17501.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,680:1.00:680
chr11	4731180	rs4432013	G	A	16023.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr11	4731468	rs4436535	G	A	11642.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr11	4731583	rs4471413	C	T	15055.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr11	4791111	rs17324812	T	C	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	4869649	rs12361955	G	A	8303.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	4869906	rs7117260	A	C	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	4870139	rs11602455	G	A	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	4870261	rs11602499	G	C	8011.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	4870298	rs11601065	T	G	9498.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr11	4880892	rs11034368	T	C	11297.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr11	4928841	rs7108225	T	C	12113.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr11	4936608	rs12419598	C	G	10927.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	4945196	rs1378739	T	G	9614.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	4964627	rs2595993	C	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	4964649	rs2595992	G	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	4964753	rs2605301	A	G	7377.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	4964784	rs2605302	A	T	8625.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	4965239	rs2570581	G	T	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	4965301	rs2605303	G	T	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	4967468	rs28698374	G	A	14046.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.99;QD=25.68;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,547:1.00:547
chr11	4968198	rs3845246	C	A	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.86;QD=27.04;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	4976768	rs112749434	C	T	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	4976811	rs28482315	C	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.10;SOR=6.804;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	5013169	.	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.665;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:118,22:0.16:140
chr11	5013421	rs5789346	G	GT	2566.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.000;QD=18.87;ReadPosRankSum=0.972;SOR=0.601;set=HC	GT:AD:AF:DP	1/1:8,128:0.94:136
chr11	5020416	rs2445290	A	G	8498.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr11	5020458	.	C	A	4346.77	.	AC=1;AF=0.500;AN=2;DP=365;set=Intersection	GT:AD:AF:DP	0/1:152,205:0.57:357
chr11	5079847	rs150815558	C	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	5079946	rs2445332	C	T	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	5080844	rs16909440	T	C	11713.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr11	5141902	rs10837374	T	C	4540.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	5141980	rs4426129	A	G	6358.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	5142270	rs10837375	T	G	12986.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.29;ReadPosRankSum=-0.765;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:2,492:1.00:494
chr11	5142932	rs369996791	AACTT	A	1070.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	5172786	rs10768611	A	G	9057.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	5199222	rs7924390	A	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	5199340	rs113029548	A	AATGCCC	9066.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	5199645	rs6578560	T	C	10856.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr11	5199660	rs6578561	T	C	9376.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	5199675	rs6578562	C	T	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	5199708	rs6578563	T	A	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	5199817	rs5789371	GC	G	958.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	5247726	rs7946748	G	A	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	5263577	rs10128555	C	G	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	5269582	rs371855998	AG	A	13301.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.07;MQRankSum=2.621;QD=25.68;ReadPosRankSum=0.026;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:2,516:1.00:518
chr11	5269584	rs1065686	T	A	23794.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.00;QD=45.15;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,527:1.00:527
chr11	5269586	rs371890964	A	AG	23834.73	.	AC=2;AF=1.00;AN=2;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.93;QD=45.06;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,529:1.00:529
chr11	5269799	rs28440105	A	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.40;QD=41.87;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	5269806	rs28379094	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.49;QD=46.37;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	5270539	rs111624259	C	A	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.07;QD=25.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	5270686	rs1061234	G	A	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.88;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	5274717	rs2070972	A	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.44;QD=28.86;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	5289896	rs3061750	A	AAAAC	5886.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:3,136:0.98:139
chr11	5322737	rs10837771	A	G	13715.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr11	5323071	rs7118113	C	T	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	5344552	rs7934105	C	T	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.16;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	5344561	rs7933257	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.45;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	5344681	rs11036815	G	A	6536.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	5344772	rs10742622	T	C	10974.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr11	5344847	rs10768793	A	G	9157.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr11	5344902	rs7937237	C	G	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	5345170	rs7952293	A	G	13872.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr11	5345486	rs4910750	G	A	5148.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	5364276	rs4910551	G	A	11301.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr11	5364450	rs11036912	A	G	13614.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr11	5372690	rs4373970	A	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	5372718	rs4494330	G	T	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	5372751	rs4910755	A	C	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	5372856	rs4910756	A	G	14146.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:2,544:1.00:546
chr11	5373006	rs7483122	T	C	10237.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr11	5373104	rs5006889	A	G	12599.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=46.15;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	5373111	rs7479477	G	A	13038.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=46.07;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	5373114	rs5006888	G	A	12849.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=44.77;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	5373129	rs5006887	C	T	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	5373170	rs5006886	C	G	9402.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr11	5373242	rs5006885	T	G	23814.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,528:1.00:528
chr11	5373251	rs5006884	C	T	24155.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr11	5373311	rs5006883	T	C	14361.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr11	5373334	rs5006882	A	G	13521.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr11	5373562	rs5024042	C	A	16695.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr11	5373646	rs5024041	T	C	16414.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr11	5373724	rs5024040	A	G	11022.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=1.277;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	5373728	rs5024039	C	A	10868.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	5373738	rs5024038	A	G	8774.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=1.479;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	5373807	rs5024037	G	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	5410934	rs1498467	T	G	15280.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr11	5411031	rs1498468	C	T	11125.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr11	5411239	rs1498469	T	C	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	5411395	rs9783355	C	A	16365.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	5411398	rs2736531	T	G	16348.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr11	5411579	rs10768906	GT	AC	11602.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	5423775	rs7481498	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.66;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	5423779	rs2736527	G	A	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.42;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	5424050	rs1909262	G	A	13402.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr11	5424430	rs7929412	A	G	16824.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:1,640:1.00:641
chr11	5424838	rs2736525	T	A	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	5443442	rs2736590	G	C	15876.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr11	5443700	rs2736588	C	T	14608.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr11	5443739	rs2736587	T	C	12937.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr11	5443867	rs10838092	C	T	24558.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr11	5443887	rs10838093	T	C	26355.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.16;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,571:1.00:571
chr11	5443893	rs10838094	G	A	14590.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=-0.329;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:2,565:1.00:567
chr11	5443963	rs10838095	G	A	13779.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr11	5444061	rs2736586	G	A	9416.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr11	5444136	rs2647574	C	T	11447.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr11	5444353	rs2647573	T	C	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	5452418	rs1566278	G	A	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	5462085	rs11037444	G	A	8846.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	5462255	rs11037445	C	G	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	5474838	rs2030094	G	T	9152.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:2,363:0.99:365
chr11	5475431	rs35301588	T	TCA	28747.73	.	AC=2;AF=1.00;AN=2;DB;DP=683;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=43.89;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,655:1.00:655
chr11	5475597	rs11037503	C	T	14298.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr11	5510284	rs417425	A	G	11120.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:2,430:1.00:432
chr11	5510341	rs404280	C	T	15720.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr11	5510497	rs2467219	T	C	11309.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr11	5510626	rs444878	T	C	14880.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr11	5510688	rs7101919	T	C	17215.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chr11	5510928	rs392296	G	A	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	5511003	rs426886	G	A	195.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	5528918	rs2227271	C	T	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	5529139	rs2234456	T	C	21084.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	1/1:0,825:1.00:825
chr11	5529865	rs186434	G	A	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	5536415	rs10769023	C	T	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	5536537	rs393044	A	C	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	5536852	rs2017434	A	G	5900.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	5537045	rs872751	T	G	12064.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr11	5537161	rs2047456	A	G	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	5537780	rs1809862	C	A	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	5549254	rs1498480	T	C	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	5549316	rs1846317	A	G	11895.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr11	5549531	rs1560811	T	C	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.761;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	5566030	rs1995158	A	G	15227.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	5566051	rs1995157	C	A	14511.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	5566112	rs1995156	C	T	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	5566365	rs1566275	T	C	7216.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	5566489	rs10769054	C	T	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	5566830	rs10838299	A	C	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	5602968	rs10769086	G	A	7895.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	5617987	rs12272467	G	A	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	5618298	rs146384026	A	ATTTTAT	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	5631479	rs3740999	A	C	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	5631622	rs7125403	G	T	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	5653417	rs4287358	AT	GA	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	5655150	rs7941976	T	A	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	5655233	rs3824951	G	A	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	5655697	rs150979036	A	AAT	727.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.64;ReadPosRankSum=1.687;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr11	5655722	rs3060967	TAC	T	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-0.851;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr11	5655758	.	CACAT	C	178	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=27;MQ=59.55;NF=9;NR=6;PP=178;QD=12.0666666667;SC=CACACACACACACATATATAT;SbPval=0.17;Source=Platypus;TC=55;TCF=23;TCR=32;TR=15;WE=5655771;WS=5655748;set=Platypus	GT:AD:AF:DP	0/1:40,15:0.27:55
chr11	5662319	rs7108834	C	T	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	5663575	rs12792498	T	C	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	5663920	rs66637086	CT	C	2993.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	5664355	.	A	ATATATAT	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.816;QD=9.93;ReadPosRankSum=-0.145;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:17,27:0.61:44
chr11	5664974	rs7109861	T	C	18872.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,751:1.00:751
chr11	5687320	rs35734937	T	TA	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.433;QD=1.63;ReadPosRankSum=0.520;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:97,36:0.27:133
chr11	5689145	rs34080219	C	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	5691191	rs4309185	C	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=26.43;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	5700340	rs3740995	T	C	6551.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	5701409	rs3824949	G	C	8174.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	5718517	rs7935564	G	A	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	5719667	rs2291842	T	C	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	5719835	rs2291844	T	C	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	5719848	rs7950912	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	5730248	rs999295	A	G	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	5755605	rs1498552	A	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	5757785	rs12792180	C	T	8752.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	5758118	rs7396766	A	C	16003.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.90;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,618:1.00:618
chr11	5776287	rs7936512	C	T	19200.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr11	5776470	rs7394584	T	G	17494.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr11	5776484	rs4910844	A	T	17502.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr11	5776623	rs7396938	A	T	11999.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr11	5777023	rs10742782	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	5777053	rs10742783	A	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	5809308	rs7934670	A	T	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	5809477	rs10838637	A	G	9714.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr11	5809673	rs10769224	C	T	12979.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr11	5809746	rs10742787	C	T	10027.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	5810080	rs10742788	T	C	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	5810103	rs68146349	AAT	A	1694.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	5817841	rs1453423	C	T	11853.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.00;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,456:1.00:456
chr11	5817896	rs1453422	G	A	10103.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr11	5841856	rs4758435	C	T	16557.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr11	5862075	rs7946139	T	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	5862532	rs10742809	A	C	10398.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr11	5862653	rs4357719	T	C	10544.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	5862731	rs10838719	A	G	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	5862780	rs4362172	T	C	8976.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	5862845	rs4592451	A	G	9496.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	5862937	rs4495918	C	A	6985.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	5862984	rs10769272	G	C	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	5863013	rs4362173	T	C	8438.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	5863113	rs10742810	G	A	11749.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr11	5863240	rs4417311	C	G	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	5863306	rs4363637	G	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	5906048	rs4758168	G	A	10459.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr11	5906073	rs4757986	G	T	9620.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	5906192	rs1453435	A	C	21421.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,807:1.00:807
chr11	5906205	rs4757987	G	A	24218.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.642;ClippingRankSum=0.000;DB;DP=953;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=0.469;SOR=0.320;set=HC	GT:AD:AF:DP	1/1:1,936:1.00:937
chr11	5906369	.	G	A	18360.77	.	AC=2;AF=1.00;AN=2;DP=705;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr11	5922707	rs7106300	C	T	11476.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr11	5923297	rs4601752	A	G	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	5923419	rs4559671	C	T	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	5989293	rs7113548	G	A	14834.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr11	5989415	rs7114672	C	T	9088.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	6007272	rs4237768	A	G	11318.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr11	6007613	rs4354673	T	G	14736.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr11	6007680	rs4436524	A	G	15722.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr11	6007743	rs4436525	A	G	13943.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:1,531:1.00:532
chr11	6023581	rs11040248	A	G	13744.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:1,535:1.00:536
chr11	6023640	rs11040249	T	C	12862.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr11	6023818	rs10839221	G	A	9340.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	6079001	rs4448669	G	A	18220.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr11	6129837	rs1462983	C	T	13031.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr11	6150738	rs325637	A	G	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	6173364	rs325695	T	A	12133.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr11	6220376	rs325610	G	C	8454.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	6221169	rs10839531	A	G	12000.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr11	6221214	rs11040799	T	A	14609.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr11	6227083	rs10742968	C	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	6231731	rs10769671	C	T	23793.77	.	AC=2;AF=1.00;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	1/1:0,903:1.00:903
chr11	6243804	rs3750945	A	G	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	6243843	rs3750946	C	G	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	6243963	rs3750947	G	A	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	6243982	rs325606	T	G	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	6281108	rs2929180	T	G	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	6281400	rs11040819	T	C	26475.77	.	AC=2;AF=1.00;AN=2;DB;DP=1067;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.24;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,1049:1.00:1049
chr11	6292065	rs1800843	C	A	10405.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	6292837	rs10839535	CG	GA	8553.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	6340525	rs12570	A	T	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	6340706	rs1051992	A	G	18865.77	.	AC=2;AF=1.00;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	1/1:0,743:1.00:743
chr11	6340869	rs79889908	A	G	17239.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,659:1.00:659
chr11	6341684	rs2682123	C	G	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	6411935	rs1050228	T	C	12310.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:8,494:0.98:502
chr11	6416959	rs1800606	C	T	26866.77	.	AC=2;AF=1.00;AN=2;DB;DP=1022;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.68;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,1007:1.00:1007
chr11	6461277	rs2682099	T	A	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	6461797	.	TAAAAAAAAAAAAA	T	1136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=46.823;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=19.60;ReadPosRankSum=-0.935;SOR=4.160;set=HC	GT:AD:AF:DP	0/1:21,37:0.64:58
chr11	6470057	rs2723636	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	6541580	rs2555143	T	G	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	6549634	rs55919773	G	GGTGT,GGT	306.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=18;set=Intersection	GT:AF:DP	0/1:0.80:10
chr11	6549779	rs4633449	A	C	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	6549995	rs7480644	A	G	7876.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.58;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	6550004	rs2344828	A	G	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	6550309	rs2344829	G	A	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	6565487	rs75814048	G	T	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	6567895	rs11270441	C	CTGCCCTACTGCA	11054.73	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	6579106	rs11040920	C	A	10607.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr11	6579539	rs10839583	A	G	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	6585502	rs7107072	T	C	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	6588228	rs10769699	G	A	10175.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr11	6593188	rs185616789	T	C	23333.77	.	AC=2;AF=1.00;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	1/1:0,894:1.00:894
chr11	6621516	rs11040933	G	A	7357.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	6624617	rs12420389	T	C	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,376:1.00:377
chr11	6629530	rs2048092	G	A	6237.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	6630028	rs11314683	TC	T	33515.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=1369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.162;QD=25.53;ReadPosRankSum=-0.854;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:4,1309:1.00:1313
chr11	6630410	rs11826498	T	C	17707.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr11	6631016	rs2292195	C	T	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	6632450	rs12451	C	T	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	6636300	rs1800723	A	G	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	6636900	rs1800745	G	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	6637518	rs7943955	A	G	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	6637739	.	ATT	A	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=5.343;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.286;QD=12.75;ReadPosRankSum=1.364;SOR=1.724;set=HC	GT:AD:AF:DP	0/1:20,46:0.70:66
chr11	6643976	rs7122587	C	T	10568.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	6644600	rs72911011	C	T	29663.77	.	AC=2;AF=1.00;AN=2;DB;DP=1161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,1137:1.00:1137
chr11	6647622	rs11827437	T	C	10703.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:1,412:1.00:413
chr11	6647931	rs34782445	C	T	10442.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	6647978	rs4442534	C	T	12736.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr11	6648424	rs4758443	G	A	9188.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	6648937	rs11040937	C	T	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	6651810	rs2659872	A	G	13393.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.778;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=25.91;ReadPosRankSum=1.481;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,516:1.00:517
chr11	6652618	rs2659871	C	T	26432.77	.	AC=2;AF=1.00;AN=2;DB;DP=1017;set=Intersection	GT:AD:AF:DP	1/1:0,1002:1.00:1002
chr11	6653232	rs2659870	C	G	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	6654613	rs11040938	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	6655332	rs2659869	T	A	30909.77	.	AC=2;AF=1.00;AN=2;DB;DP=1200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,1182:1.00:1182
chr11	6655433	rs997263	G	A	18130.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,694:1.00:694
chr11	6703892	rs1567135	T	G	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	6735869	rs7937911	A	G	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.72;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	6736745	rs7130858	G	A	10232.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr11	6737138	rs3741274	T	C	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	6737258	rs3741273	C	T	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	6737893	rs11040980	C	T	11466.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr11	6737927	rs11040981	G	A	13453.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,520:1.00:520
chr11	6738291	rs11040983	C	T	9402.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	6738728	rs17262495	T	C	16303.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,638:1.00:638
chr11	6738952	rs10769716	G	T	16610.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,650:1.00:650
chr11	6739551	rs11040984	T	C	11508.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr11	6739809	rs11040985	C	T	22413.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.65;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,502:1.00:502
chr11	6739814	rs7114441	C	T	22457.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.38;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr11	6739841	rs79708590	G	A	15347.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr11	6740136	rs10839601	G	A	12114.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr11	6740206	rs10839602	C	T	10519.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	6740285	rs10839603	G	A	9198.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr11	6740462	rs10839604	G	C	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	6790106	rs7102536	T	C	10418.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr11	6890939	rs4758141	C	T	16400.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=45.56;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr11	6890946	rs4758142	A	G	17393.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=42.01;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr11	6891113	rs3930075	A	G	12897.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr11	6891528	rs7117739	C	G	9937.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	6891605	rs10839631	A	G	10833.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:2,413:1.00:415
chr11	6891758	rs7926083	A	C	21653.77	.	AC=2;AF=1.00;AN=2;DB;DP=861;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=25.66;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,844:1.00:844
chr11	6898758	rs7102808	A	C	10457.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr11	6913127	rs2741804	A	G	8327.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr11	6913244	rs1965208	A	G	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	6913290	rs1965209	A	G	9985.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	6942476	rs10839658	C	A	12723.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,493:1.00:493
chr11	6962957	rs2857891	C	T	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	6964926	rs79180154	T	G	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	6965012	rs2515947	C	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	6977175	rs2239730	G	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	7021875	rs61879014	T	A	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	7021922	rs143785175	T	C	9181.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr11	7022160	rs2857919	A	G	9854.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	7022360	rs2239734	A	C	17402.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,670:1.00:670
chr11	7059960	rs12801277	A	C	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	7063755	rs7123944	C	T	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	7071031	rs1552726	G	A	13882.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr11	7110751	rs11041171	A	G	4110.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.667;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.398;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=0.097;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:1,163:0.99:164
chr11	7324475	rs4412741	T	C	27569.77	.	AC=2;AF=1.00;AN=2;DB;DP=1067;set=Intersection	GT:AD:AF:DP	1/1:0,1054:1.00:1054
chr11	7335424	rs2035639	C	G	9104.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr11	7437426	rs193028891	C	G	6252.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	7439093	rs4757993	G	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	7487951	rs5789520	C	CA,CAA	1348.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.908;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;MQRankSum=0.556;QD=12.49;ReadPosRankSum=1.062;SOR=0.883;set=HC	GT:AD:AF:DP	1/2:23,52,33:0.48,0.31:108
chr11	7507252	rs200453743	C	T	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	7570607	rs7122137	G	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	7570840	.	C	CTT	3182.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.470;QD=16.16;ReadPosRankSum=-1.364;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:35,162:0.82:197
chr11	7570898	rs7125594	G	A	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	7586738	rs6578874	G	T	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	7598952	rs6578880	C	G	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	7618953	rs4758203	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	7619518	rs4758206	T	C	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	7619549	rs34347748	G	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	7642031	rs10769813	G	A	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	7642407	rs10839822	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	7649640	rs6578886	C	G	8362.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	7650607	rs6578887	A	C	9830.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	7652385	rs4130354	T	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	7660921	rs11041491	C	T	7927.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	7662361	rs10839829	C	T	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	7662732	rs4643071	C	T	9522.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr11	7663726	rs4402283	T	C	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	7663779	rs3861066	C	T	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	7670160	rs4421737	T	C	10784.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr11	7670249	rs4237757	A	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	7670305	rs4758008	C	A	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	7670353	rs4758009	A	C	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	7670440	rs4758209	A	G	14121.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,555:1.00:555
chr11	7671974	rs11041497	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	7672272	rs3923491	G	A	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	7673015	rs5864	G	A	15186.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,584:1.00:584
chr11	7686596	rs13172	G	A	8765.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	7686602	rs16411	G	GTGTT	14356.73	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	7686674	rs13854	T	C	6044.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	7687146	rs67173996	G	A	11667.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr11	7687265	rs59114959	A	T	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	7687669	rs12796110	A	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	7687715	rs12801394	T	C	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	7689633	rs10743030	A	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	7690685	rs4631871	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	7693853	rs57207415	GCA	G	7981.73	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:25,360:0.94:385
chr11	7716549	rs4287332	C	G	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	7716855	rs4528317	T	A	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	7723171	rs5789540	GA	G	3042.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	7723206	rs146353406	A	G	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	7723683	rs4373911	G	A	10315.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr11	7725173	rs3924748	G	A	7245.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	7727745	rs118099904	A	G	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	7750166	rs117085034	T	A	16795.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr11	7794545	rs1482784	C	A	14168.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr11	7794724	rs12293183	T	C	19807.77	.	AC=2;AF=1.00;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr11	7794976	rs980145	T	A	23855.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,536:1.00:536
chr11	7794980	rs12285181	C	G	23887.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,534:1.00:534
chr11	7817379	rs77840152	A	G	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	7818471	rs1482804	C	T	9249.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	7847466	rs1482792	A	G	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	7847523	rs1482794	T	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	7871011	rs4758022	A	G	18831.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr11	7949134	rs12273639	T	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	7949192	rs11041669	G	A	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	7949350	rs4758258	A	G	13645.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr11	7950024	rs12272735	A	G	14460.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:2,560:1.00:562
chr11	7960045	rs6578915	G	A	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	7961130	rs4758259	C	T	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	8009241	rs12421289	C	T	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	8014479	rs4758267	C	T	9287.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	8060654	rs17847547	A	G	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	8061100	rs10769865	C	T	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	8115762	rs7396690	C	G	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	8117228	rs11041739	A	G	16400.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:1,628:1.00:629
chr11	8118185	rs10160258	C	G	13456.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	8118200	rs7931842	C	A	14239.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	8119063	rs7950355	A	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr11	8122234	rs7394561	G	A	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	8122242	rs138755629	A	AG	5800.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	8246326	rs34544683	G	A	9094.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr11	8251921	rs3750952	G	C	11047.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr11	8284838	rs204931	A	G	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr11	8284860	rs204930	G	T	10426.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr11	8284981	rs176083	A	C	8335.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	8284995	rs204929	T	C	8187.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	8494843	.	TA	T	1306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=-0.505;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:27,86:0.76:113
chr11	8496516	rs2289923	G	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr11	8639325	rs4929924	G	A	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	8641501	rs7946508	C	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	8641882	rs7943945	G	A	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	8642218	rs7950166	C	T	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	8644530	rs4929948	T	G	11782.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr11	8644562	rs10533257	TCATA	T	10957.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	8646237	rs12803166	G	T	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	8662090	rs11042022	T	C	2678.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.987;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.624;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=0.000;QD=23.09;ReadPosRankSum=-1.159;SOR=1.375;set=HC	GT:AD:AF:DP	1/1:1,115:0.99:116
chr11	8662516	rs11042023	T	C	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	8669437	rs10840100	A	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	8670172	rs7950801	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	8671369	rs10840101	C	T	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	8693405	rs11517718	G	T	7985.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	8704965	rs2073684	C	T	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	8705528	rs61875926	C	G	13684.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr11	8717003	rs2270956	C	T	18126.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,698:1.00:698
chr11	8719615	rs10840113	C	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	8721611	rs36089509	TG	T	1655.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr11	8732300	.	GCA	G	428.73	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr11	8736046	rs931757	C	T	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	8751640	rs3812762	G	C	11959.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=7.283;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=23.667;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=-1.204;SOR=0.426;set=HC	GT:AD:AF:DP	1/1:21,537:0.96:558
chr11	8797707	.	GCACACACA	G,GCA	4231.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=125;set=Intersection	GT:AF:DP	1/2:0.17,0.81:89
chr11	8797715	.	A	G	1521.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.276;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=-1.332;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:17,72:0.81:89
chr11	8797715	.	ACA	GCG	1456	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=1;MGOF=20;MMLQ=17;MQ=59.85;NF=30;NR=29;PP=1456;QD=25.5842012689;SC=GCGCACACACACACACACACA;SbPval=0.34;Source=Platypus;TC=86;TCF=48;TCR=38;TR=59;WE=8797725;WS=8797683;set=Platypus	GT:AD:AF:DP	0/1:27,59:0.69:86
chr11	8797717	.	A	G	2319.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=6.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.90;ReadPosRankSum=2.182;SOR=0.221;set=HC	GT:AD:AF:DP	0/1:12,99:0.89:111
chr11	8933064	rs1133833	G	A	10647.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr11	8934101	rs2742518	A	G	11135.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr11	8938934	rs2016844	C	T	11649.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:1,461:1.00:462
chr11	8942942	rs2653601	C	T	19252.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr11	8942999	rs2568023	G	A	17077.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:1,671:1.00:672
chr11	8947021	rs2653588	A	G	14104.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr11	8947179	rs2568077	G	A	11836.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr11	8949094	rs2568075	A	G	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,279:0.99:281
chr11	8959370	rs2742505	G	A	6884.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	9001289	rs71062805	TA	T	878.75	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=1.905;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:9,63:0.88:72
chr11	9001291	rs199678234	A	T	785.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.472;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=1.162;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:17,55:0.76:72
chr11	9004376	.	CTT	C,CT	1200.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=13.651;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.703;QD=9.92;ReadPosRankSum=-0.392;SOR=0.111;set=HC	GT:AD:AF:DP	1/2:21,37,63:0.31,0.52:121
chr11	9005036	rs2568046	T	A	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	9045831	rs72856032	A	C	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	9051385	rs7479998	C	A	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	9052423	rs7395988	A	C	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	9096189	rs7930311	G	C	9472.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr11	9112020	rs7484187	T	A	500.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	9113008	rs142900716	GGCA	G	7424.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	9167399	rs10732517	T	C	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	9171775	rs7123970	A	G	4331.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	9172432	rs10769995	A	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	9187634	.	C	CT,CTT	432.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=-1.425;SOR=0.365;set=HC	GT:AD:AF:DP	1/2:1,12,9:0.55,0.41:22
chr11	9192336	rs10550560	TAC	T	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.875;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr11	9198276	rs7394878	T	C	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	9199650	rs60693427	C	T	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	9228785	rs7396439	G	A	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	9309405	rs5014247	A	G	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	9316937	rs4601780	G	A	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	9321399	rs10743101	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	9321415	rs11042272	C	T	1078.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.468;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.45;ReadPosRankSum=-0.569;SOR=0.292;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr11	9336093	rs72850544	C	T	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr11	9406349	rs4606477	T	C	10715.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=25.88;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr11	9442388	rs12418581	C	A	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	9450377	rs2290423	T	G	8054.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	9459592	.	GTTTTTTTTTTTTTT	G	1116.73	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	9493100	rs7119680	G	T	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	9494461	rs35668857	C	CT	1069.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=1.232;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:36,82:0.69:118
chr11	9495961	rs2278900	A	T	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	9519375	.	CT	C	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=3.743;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.020;QD=2.64;ReadPosRankSum=0.202;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:45,33:0.42:78
chr11	9519420	rs10840249	T	C	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	9522567	rs2290425	T	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	9537904	rs10743108	G	C	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	9595732	rs11042428	C	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.35;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	9715628	rs360049	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	9724837	rs2572940	C	T	6702.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	9725030	rs2572939	T	A	9218.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	9734945	rs1390679	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	9735192	rs1496477	G	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	9746137	rs419412	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	9746201	rs1695613	G	A	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	9746552	rs1960386	A	G	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	9748483	rs2453831	T	C	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	9748620	rs2453832	G	T	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=41.54;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	9748624	rs2454612	C	T	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=43.74;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	9749552	rs67364105	CT	C	1312.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	9749554	rs56116109	T	G	1272.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	9749645	rs397686	A	C	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	9749894	rs413976	T	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	9751089	rs12360647	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	9754221	rs360157	C	T	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	9759608	rs93139	T	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	9759713	rs93138	T	G	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	9759918	rs173396	G	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	9769562	rs415895	C	G	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	9771687	rs6483656	G	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=26.31;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	9801925	rs3751000	T	G	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	9802228	rs360124	G	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	9806914	rs71453928	T	TACTG	4624.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	9812236	rs2645029	G	A	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	9830732	rs10770066	A	T	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	9853777	rs12574508	G	C	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	9861009	rs7483882	G	A	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	9875353	rs375686	G	T	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.34;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	9878332	rs11322743	AT	A	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.631;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:18,51:0.74:69
chr11	9917620	rs4910073	G	C	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	10215598	rs4910097	C	T	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	10472492	rs35417007	GC	G	5327.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=34.60;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	10508938	rs3802917	T	C	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	10518289	rs1466426	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	10518521	rs2071016	C	T	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	10553675	rs4910155	C	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	10655609	rs2162044	C	T	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr11	10673739	rs4909945	T	C	16875.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr11	10709194	rs1035694	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	10711817	rs7123827	A	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	10715124	rs10770136	T	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	10778510	rs6484483	T	G	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr11	10791983	rs2132517	G	A	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	10795431	.	CA	C	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.236;QD=2.69;ReadPosRankSum=1.488;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:75,44:0.37:119
chr11	10820663	.	TAA	T,TA	5080.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=0.939;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.436;QD=17.34;ReadPosRankSum=-0.074;SOR=0.531;set=HC	GT:AD:AF:DP	1/2:18,223,52:0.76,0.18:293
chr11	10822350	rs7951708	C	T	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	10823576	.	C	CACACTCCTAAAATAGTTTCATGTTTTAATAGCAAATGAAATCACATATATTGCAGAATTTAACATTTGTTGCCTAA	2675.73	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,0:0:0
chr11	10823815	rs7105210	C	T	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	10824540	rs10743150	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	10828490	rs11373962	T	TA	1955.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	10830106	rs7127279	A	G	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.80;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	11348669	rs17435705	G	A	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	11348828	rs745181	A	G	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	11354346	rs901553	T	C	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	11354393	rs901554	A	G	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	11373508	rs7948121	T	C	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	11373587	rs7945066	A	G	24592.77	.	AC=2;AF=1.00;AN=2;DB;DP=939;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=26.27;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,936:1.00:936
chr11	11373635	rs1056963	C	T	33466.77	.	AC=2;AF=1.00;AN=2;DB;DP=1292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=25.98;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,1288:1.00:1288
chr11	11373808	rs1056951	T	G	12765.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:1,490:1.00:491
chr11	11373925	rs4243927	A	C	21113.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=25.84;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,817:1.00:817
chr11	11374016	rs2896586	T	A	13028.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr11	11374283	rs2896585	T	G	15077.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.524;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=-0.063;QD=26.18;ReadPosRankSum=-0.898;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:1,575:1.00:576
chr11	11398698	rs10444245	G	A	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	11905993	rs10765894	C	T	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	11913585	rs11022079	G	T	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	11944265	rs72857625	A	G	5242.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	11954786	rs10741562	G	A	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	11969414	rs72857637	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	11969971	rs72857639	G	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	11976628	rs7933089	G	A	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	11977573	rs2307073	T	C	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.221;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	11986061	rs3206824	T	C	11262.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:2,443:1.00:445
chr11	11989899	rs2291599	T	C	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	12115630	rs7104830	C	T	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	12262476	rs2641936	C	A	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	12264140	rs880963	A	C	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	12279937	rs2270513	T	C	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	12279991	rs11022265	G	C	7315.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	12283928	rs10765933	C	T	9513.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:1,365:1.00:366
chr11	12313887	rs1874043	C	G	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	12315186	rs10741578	G	A	23286.77	.	AC=2;AF=1.00;AN=2;DB;DP=892;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,885:1.00:885
chr11	12315407	rs10741579	G	C	9346.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	12315716	rs1493951	C	T	10658.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr11	12315848	rs1493952	C	T	12587.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr11	12315891	rs1493953	G	A	11937.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr11	12315915	rs1493954	A	G	12785.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr11	12316344	.	G	GCTC,GCTCCTC	2831.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=246;set=Intersection	GT:AF:DP	1/2:0.15,0.79:78
chr11	12345459	rs903213	C	T	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	12379792	rs10741583	G	C	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	12474560	rs72862241	G	A	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	12495607	rs2288291	T	C	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	12495623	rs7109678	G	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	12517892	rs138094049	A	AGAGTGCATGCATGCAT	561.73	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	12518237	rs12223547	G	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	12534808	rs2403631	A	G	21509.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	1/1:0,831:1.00:831
chr11	12535415	rs11022380	A	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	12900359	rs11022528	T	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	12903443	rs2304733	C	T	16656.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,648:1.00:648
chr11	12951926	rs2727360	A	G	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	13032679	rs10603579	AGG	A	1438.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.41;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	13032686	rs11399899	T	TC	1514.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.28;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	13398129	rs10741617	T	A	12832.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr11	13399791	rs10832030	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	13514263	rs6254	C	T	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:1,330:1.00:331
chr11	13514417	rs694	C	T	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	13716530	rs7130943	A	G	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	13984583	rs3761859	C	T	24069.77	.	AC=2;AF=1.00;AN=2;DB;DP=951;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,940:1.00:940
chr11	13984720	rs10741631	A	C	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	14101493	rs5789820	G	GC	15685.73	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr11	14246296	rs1025412	G	A	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	14264916	rs2303973	A	G	8641.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:1,336:1.00:337
chr11	14284599	.	TAA	T	93.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=-0.674;QD=7.79;ReadPosRankSum=-2.670;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:6,6:0.50:12
chr11	14303282	rs2303972	T	A	16890.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr11	14329984	rs2915408	C	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	14378347	rs34757328	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=4.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-1.325;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr11	14501267	.	G	GA	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.399;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:137,35:0.20:172
chr11	14504774	.	C	CCACACACA	618.73	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	14540671	rs1823466	A	G	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	14991539	rs5239	T	C	6312.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	14992598	rs35909067	TAAGAGG	T	8906.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	14992606	rs34294892	A	T	8914.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	14999877	rs7929159	G	A	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	15098718	rs2282653	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	15170644	rs1714354	T	C	9574.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	15170879	rs1714353	C	T	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	15197186	rs1792588	A	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	15198772	rs1624731	G	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	15199957	rs1714376	T	C	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	15262261	rs80167082	A	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	15267597	rs1054952	C	A	9772.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,382:0.99:384
chr11	15267727	rs1945624	A	G	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	16117460	rs3059081	TA	T	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=4.140;QD=1.52;ReadPosRankSum=0.485;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:137,62:0.31:199
chr11	16117684	.	G	GA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.024;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr11	16205323	rs7926424	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	16205595	rs1455111	C	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	16339918	rs34820506	C	CT	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.816;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:184,57:0.24:241
chr11	16760244	rs1846936	T	G	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	16815883	rs78875781	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	16847558	rs400458	A	G	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	16848077	rs390974	G	A	17812.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr11	16863049	rs369457	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	16863087	rs452745	A	G	1577.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=-0.756;SOR=0.456;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr11	16863362	rs454869	T	A	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	16863424	rs431208	C	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	16873799	rs417406	C	T	9388.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	16874067	rs418113	C	T	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	16876618	rs409354	G	A	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	16892477	rs402973	C	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	17035487	.	A	AC	1418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-1.224;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:29,66:0.69:95
chr11	17035718	rs61881311	A	G	14325.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr11	17099243	.	C	G	6639.77	.	AC=2;AF=1.00;AN=2;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=26.99;SOR=1.780;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	17111533	.	C	T	288.77	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	17113483	rs7113396	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	17126670	rs2052188	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	17172133	rs2302511	T	C	19848.77	.	AC=2;AF=1.00;AN=2;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,786:1.00:786
chr11	17191019	rs214936	A	G	7782.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr11	17333377	rs12225041	T	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	17333663	rs2521998	G	A	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	17339127	rs2634462	T	C	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	17351873	rs34471145	T	TA	3053.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	17352477	rs3842269	TACA	T	3371.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=44.36;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	17394073	rs10832778	C	G	11501.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr11	17408404	rs5213	C	T	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	17408630	rs5215	C	T	13362.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:1,533:1.00:534
chr11	17409069	rs5218	G	A	20369.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	1/1:1,753:1.00:754
chr11	17409572	rs5219	T	C	18747.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,723:1.00:723
chr11	17410283	rs5222	C	T	29119.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.173;ClippingRankSum=0.000;DB;DP=1154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;MQRankSum=0.060;QD=26.21;ReadPosRankSum=0.267;SOR=0.484;set=HC	GT:AD:AF:DP	1/1:1,1110:1.00:1111
chr11	17414757	rs41282912	C	T	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	17415190	rs4148646	C	G	12335.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr11	17416097	rs118117634	G	A	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	17418477	rs757110	C	A	10588.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr11	17435936	rs4148631	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	17435966	rs4148630	G	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	17436191	rs1800852	A	G	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	17436191	.	AAG	GAA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=23;MQ=60.0;NF=27;NR=61;PP=2947;QD=20;SC=GGGGGTGCGGAAGGCATTCTC;SbPval=0.55;Source=Platypus;TC=93;TCF=29;TCR=64;TR=88;WE=17436201;WS=17436181;set=Platypus	GT:AD:AF:DP	1/1:5,88:0.95:93
chr11	17436193	rs1800851	G	A	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	17436936	rs4148626	A	G	11077.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr11	17449929	rs1799858	C	T	13719.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr11	17452492	rs1799857	G	A	7339.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	17452580	rs2074308	C	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	17464534	rs2073587	T	C	6003.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	17484971	rs2301703	G	A	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	17491571	rs10400389	C	T	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	17491730	rs8192695	G	A	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	17515833	rs1055574	A	G	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	17516038	rs2072227	C	T	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	17516081	rs113336938	CA	C	893.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	17517381	rs10530940	CAT	C	1247.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	17517407	rs1859824	G	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	17531449	rs2237965	G	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	17531831	rs733874	A	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	17533397	rs2190453	G	A	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	17533635	rs2190454	G	A	11832.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr11	17539212	rs10766408	T	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	17542439	rs2240487	T	C	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	17542583	rs2108332	C	T	21919.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr11	17542586	rs2041031	T	C	21976.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.03;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,488:1.00:488
chr11	17542649	rs2041032	T	C	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	17542872	rs2240488	G	C	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	17545091	rs4757539	A	G	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,222:0.99:224
chr11	17548659	.	A	C	391	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=2;MGOF=33;MMLQ=15;MQ=53.48;NF=22;NR=12;PP=391;QD=12.522682722;SC=TGGAGTACTGACCTGCTCCCC;SbPval=0.11;Source=Platypus;TC=110;TCF=53;TCR=57;TR=34;WE=17548667;WS=17548649;set=Platypus	GT:AD:AF:DP	0/1:76,34:0.31:110
chr11	17548737	rs12795083	T	C	6699.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=25.38;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	17574588	rs4757543	T	C	11481.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr11	17582470	rs1990180	T	C	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	17591961	rs10832802	C	T	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	17593709	rs7106548	T	C	14281.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr11	17594513	rs1076312	A	T	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	17596313	rs4757548	G	A	21255.77	.	AC=2;AF=1.00;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	1/1:1,813:1.00:814
chr11	17598187	rs4756901	G	A	28397.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,653:1.00:653
chr11	17598191	rs4756902	G	A	27784.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,611:1.00:611
chr11	17600033	rs2355466	G	A	13086.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,516:1.00:516
chr11	17667439	rs11024357	G	C	16526.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr11	17742681	rs10832853	G	C	12675.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,493:1.00:493
chr11	17800923	rs61882396	C	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	17940200	rs74865487	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.09;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	17940204	.	C	CACACAT	557.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=7.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.57;ReadPosRankSum=2.224;SOR=4.514;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr11	17940211	rs1080246	T	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.99;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	17940213	rs77640161	T	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.89;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	17948311	rs1468291	T	C	7864.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	17948537	rs728639	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	18023414	rs211134	C	T	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	18034592	rs3741202	G	C	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	18034605	rs3741201	C	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	18044304	rs211101	C	T	6657.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	18047255	rs1799913	G	T	7008.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	18054777	rs10832874	A	G	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	18063977	rs623580	A	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	18111872	.	C	CA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=4.191;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=0.75;ReadPosRankSum=1.678;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:113,34:0.23:147
chr11	18159169	rs2468839	A	G	11141.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr11	18159254	rs4274188	A	G	27963.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.053;ClippingRankSum=0.000;DB;DP=1083;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;MQRankSum=-0.115;QD=25.94;ReadPosRankSum=1.814;SOR=0.233;set=HC	GT:AD:AF:DP	1/1:1,1077:1.00:1078
chr11	18195051	rs2445179	T	C	20321.77	.	AC=2;AF=1.00;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr11	18210480	rs2445150	T	C	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	18210580	rs2124372	C	T	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	18231188	rs56386150	T	TA	1468.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.010;QD=12.04;ReadPosRankSum=1.012;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:25,97:0.80:122
chr11	18231749	rs2468789	T	G	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	18253176	rs2460827	C	T	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	18267027	rs2468844	C	T	22176.77	.	AC=2;AF=1.00;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	1/1:0,866:1.00:866
chr11	18267135	rs56373142	C	T	12939.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr11	18267188	rs58546509	GA	G	2942.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	18267373	rs1671927	C	T	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr11	18267471	rs1136766	A	G	6670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.366;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.51;MQRankSum=-5.392;QD=9.93;ReadPosRankSum=-1.261;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:328,344:0.51:672
chr11	18267651	rs80208174	A	C	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.62;QD=27.34;SOR=1.771;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	18267702	rs4757631	T	A	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	18290880	rs28720026	C	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.21;QD=27.99;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	18314579	rs10665418	C	CTT	2766.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=32.17;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	18318287	rs11024607	G	A	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	18318354	rs143784823	C	T	10104.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,393:1.00:394
chr11	18318550	.	C	CA	199.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.775;QD=9.97;ReadPosRankSum=0.903;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr11	18319180	rs7128017	G	T	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	18319279	rs7128146	G	T	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	18327648	rs7122032	T	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	18327684	rs1140047	G	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	18330385	rs35952141	G	GA	2589.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=23.76;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	18333060	.	T	TA	292.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.708;QD=4.37;ReadPosRankSum=-0.108;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr11	18333061	rs11024618	T	A	285.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.127;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=6.680;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.081;QD=4.20;ReadPosRankSum=0.259;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr11	18354877	rs4150561	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	18357180	rs4150579	A	G	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	18357624	rs200088497	TTTTTG	T	2988.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.67;QD=40.94;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	18359983	rs111946613	ATGTT	A	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	18379446	rs202243676	CA	C	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.501;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chr11	18379629	rs4150661	C	A	7967.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	18422113	rs5790035	C	CA	273.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	18424451	rs5030621	C	T	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.34;QD=25.77;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	18424487	rs4820	A	G	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.73;QD=26.29;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	18424590	rs3758680	T	A	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.92;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	18426656	rs6486424	A	T	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	18426796	rs6486425	T	G	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr11	18428552	rs56345574	C	CA	740.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;MQRankSum=-0.127;QD=22.45;ReadPosRankSum=-0.114;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr11	18428637	rs113340412	A	ATTT,ATTTT	9206.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=34.61;ReadPosRankSum=0.573;SOR=0.796;set=HC	GT:AD:AF:DP	1/2:2,77,187:0.29,0.70:266
chr11	18434536	rs10766477	T	C	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.15;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	18456235	rs4757664	A	T	799.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	18467821	rs2658565	T	C	8305.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	18487425	rs2658563	A	G	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	18498166	rs34248982	C	T	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	18548574	rs1857908	T	C	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	18557605	rs140210665	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	18596966	rs35906676	G	GA	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.587;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=2.022;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr11	18600421	.	C	CT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.445;SOR=0.179;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr11	18632984	rs10128711	T	C	13688.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr11	18633971	rs11605097	G	A	9615.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.28;ReadPosRankSum=2.180;SOR=0.371;set=HC	GT:AD:AF:DP	1/1:3,393:0.99:396
chr11	18720304	rs7946446	C	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	18728650	rs2289965	T	C	18733.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	1/1:0,734:1.00:734
chr11	18730895	rs11024768	A	G	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	18732426	rs4237728	T	G	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	18733521	rs7128042	C	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	18733579	rs10832972	T	C	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	18735321	rs10766493	A	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	18735396	rs10741752	G	T	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	18735753	rs7106673	G	A	12537.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr11	18735947	rs7125943	T	C	19489.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	1/1:0,738:1.00:738
chr11	18736247	rs4265581	G	A	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	18736942	rs3887900	G	A	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	18737095	rs4424652	C	T	12105.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr11	18738281	rs10766494	C	T	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	18738603	rs10766495	G	A	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	18741260	rs61886896	T	C	7505.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	18763698	rs4757706	A	G	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	18764087	rs2278733	C	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	18770822	rs921082	T	C	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	18771041	rs2028897	G	C	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	18978501	rs12363322	C	A	15756.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr11	18994005	rs7114481	T	C	8540.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	19169319	.	TC	T	763.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=79.005;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.660;QD=4.71;ReadPosRankSum=-1.958;SOR=0.002;set=HC	GT:AD:AF:DP	0/1:114,48:0.30:162
chr11	19188122	rs2242458	A	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	19191851	rs7114038	A	G	62.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	19191922	.	CTT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=1.177;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr11	19194141	rs7111850	T	C	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	19204423	rs72904149	G	A	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	19256250	rs793269	C	T	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	19372616	rs10655705	G	GGA	5716.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=43.97;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	19735987	rs2278132	A	G	9842.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	19798951	rs200083334	C	CT	1361.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:53,88:0.62:141
chr11	19854088	rs6483617	G	A	8920.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	19901632	rs11025310	G	A	16928.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	1/1:42,699:0.94:741
chr11	19955500	rs1372989	A	G	13512.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:1,509:1.00:510
chr11	19961457	rs11423145	C	CT	801.52	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:8,47:0.85:55
chr11	19970558	rs2585773	T	C	11993.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:2,469:1.00:471
chr11	19970579	rs2707084	C	T	8439.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	20057371	rs6483634	T	G	5091.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	20065779	rs3802800	C	G	8869.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	20067064	rs7125647	C	T	22402.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:0,853:1.00:853
chr11	20070225	rs12283929	C	G	3009.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:20,132:0.87:152
chr11	20072779	rs6483635	C	T	9982.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr11	20099112	rs4757028	A	T	11992.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr11	20099399	rs6483641	G	T	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	20099449	rs12146551	C	T	507.81	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr11	20099541	rs6483642	C	T	6632.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.33;ReadPosRankSum=-0.072;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:21,276:0.93:297
chr11	20099767	rs7121301	A	C	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.99;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	20101704	rs1867114	C	T	7845.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:34,341:0.91:375
chr11	20101744	rs1867115	C	A	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:27,276:0.91:303
chr11	20101924	rs1867116	T	G	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	20104669	rs2028570	G	A	3898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.30;ReadPosRankSum=-1.473;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,176:0.87:202
chr11	20112373	rs2289560	A	G	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:14,202:0.94:216
chr11	20112417	rs2243624	A	C	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:18,217:0.92:235
chr11	20122392	rs2245314	C	A	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	20124914	rs2243411	A	C	19702.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:0,782:1.00:782
chr11	20127046	rs11025385	C	A	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	20129075	rs4757890	G	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	20178131	rs75944386	C	G	15335.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.91;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,592:1.00:592
chr11	20178551	rs10717537	CG	C	8665.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=29.68;SOR=1.490;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	20181027	rs80216726	T	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	20385228	rs3808991	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	20398034	rs10741834	T	C	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	20403825	rs7926967	A	T	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	20403904	rs10766664	G	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	20404506	rs2403587	T	C	691.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-1.057;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:25,50:0.67:75
chr11	20404507	.	T	C	30.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=0.433;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr11	20404613	rs3824886	T	G	5565.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	20404757	rs3781679	T	C	9249.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	20411199	rs56308542	TAAAA	T,TA	2021.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=63;set=Intersection	GT:AF:DP	1/1:0.98:53
chr11	20411418	rs7937501	G	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	20411424	rs7937204	A	G	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	20419028	rs7934372	T	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	20424326	rs10833319	A	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	20429454	rs10741836	T	C	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	20448531	rs12797994	G	A	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	20473655	rs1001669	T	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	20483748	rs3758803	T	C	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	20515555	rs6483697	G	A	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	20529886	rs6483700	G	A	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	20623156	rs1443549	C	G	13004.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr11	20639400	rs7925597	A	G	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	20648364	rs3740870	G	C	10748.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	20648380	rs1805091	G	A	9425.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	20648418	rs4923548	C	T	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	20649448	rs2276429	G	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	20676253	rs2276432	T	C	5163.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	20699394	rs1793003	C	G	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	20805286	rs8176785	G	A	12797.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr11	20981894	rs2280584	T	C	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	21305927	rs4151053	T	C	9991.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	21306113	rs4151054	A	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	21581665	rs7119475	C	T	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	21581805	rs8176789	C	T	8964.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	21581997	rs8176790	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	21592228	rs4922847	C	A	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	22214877	rs139514865	A	AAGGAGGAGGGGAATGAGGAGGAGG	6941.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.536;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=7.726;MLEAC=2;MLEAF=1.000;MQ=66.44;MQRankSum=2.041;QD=34.37;ReadPosRankSum=-0.952;SOR=2.966;set=HC	GT:AD:AF:DP	1/1:4,198:0.98:202
chr11	22214903	rs12792259	G	C	10956.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.20;QD=27.12;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	22233029	rs4922980	G	A	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	22239661	.	T	TCTCACACACACACACACA,TCTCACACACACACACA	743.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=18;set=Intersection	GT:AF:DP	1/1:1.00:16
chr11	22242729	rs4312063	T	C	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	22296094	rs374045760	CT	C	5345.73	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:18,301:0.94:319
chr11	22297606	rs5790245	AT	A	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.963;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:43,20:0.32:63
chr11	22301410	rs67178076	CTT	C	329.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.98;ReadPosRankSum=-0.580;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr11	22391534	rs2665677	G	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	22397739	rs2248436	A	C	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	22646398	rs45451294	G	A	11058.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr11	22696451	rs922571	A	G	6364.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	22747745	rs337448	A	C	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	22759168	rs7934119	A	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	22770922	rs2270755	G	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	22851409	rs2286810	A	G	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	22880918	rs3213707	T	G	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	24759855	rs1564992	G	A	8421.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	24784862	rs2716532	A	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	24998252	rs369489744	CAAA	C	2388.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.369;QD=25.41;ReadPosRankSum=-1.032;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:5,89:0.95:94
chr11	24998335	rs11028314	A	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	25098938	rs7930185	G	C	15727.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr11	25099056	rs11028403	A	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:6,54:0.90:60
chr11	25100229	rs10500994	G	A	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	26353991	rs56225203	T	TA	709.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.428;QD=7.55;ReadPosRankSum=-0.516;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:34,60:0.64:94
chr11	26481497	rs12277506	A	G	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.451;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	26481611	rs2047099	G	A	14799.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr11	26484496	rs7942432	G	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	26552702	rs293937	T	C	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	26574766	rs201093158	G	GT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.267;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.697;QD=2.60;ReadPosRankSum=1.738;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr11	26574771	rs56104576	G	T	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=56.17;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	26574777	rs56197314	G	T	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=44.31;SOR=2.770;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	26574783	rs56325113	G	T	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=42.15;SOR=2.455;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	26588804	rs293976	C	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	26619872	rs7112022	T	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	26620101	rs10835009	T	C	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	26645894	rs1012552	A	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	26655624	rs7929611	T	C	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	26655641	rs71047869	A	AT	1001.79	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.397;QD=11.38;ReadPosRankSum=1.996;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:12,76:0.86:88
chr11	26655642	rs79764198	A	T	4443.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=42.73;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	26655658	rs7943086	G	A	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	26656370	rs7933233	T	C	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	26656563	rs7946841	C	T	8019.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	26656714	rs10835033	C	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	26663284	rs10835039	T	C	209.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	26663298	rs11603910	T	A	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.71;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	26663304	rs57264690	A	T	649.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.10;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	26663394	rs10835040	A	G	5867.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	26677867	rs10835050	T	C	8140.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	26677947	rs10835051	C	T	5935.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	26692594	rs149763956	TTG	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=2.242;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:95,14:0.13:109
chr11	26694812	rs4278475	C	T	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	26694842	rs4551716	C	T	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	26694979	rs4369354	A	G	18476.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:3,726:1.00:729
chr11	26702482	rs10767569	T	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	26702664	rs10734383	C	T	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	26705124	rs3924552	C	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	26705310	rs3924551	A	G	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	26734209	rs10742156	C	T	20843.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,828:1.00:828
chr11	27077118	rs10767598	C	T	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,202:1.00:203
chr11	27078643	rs140671117	C	CATA	1553.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	27362257	rs80317617	T	C	12851.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr11	27384585	rs11549824	G	A	33855.77	.	AC=2;AF=1.00;AN=2;DB;DP=1330;set=Intersection	GT:AD:AF:DP	1/1:0,1287:1.00:1287
chr11	27390089	rs2447997	T	C	8083.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	27393813	rs2448001	G	A	10943.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr11	27395447	rs77328098	C	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	27401703	rs78698326	G	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr11	27401743	rs2472623	A	T	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	27401940	rs2472622	T	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	27412782	.	C	CTTTT	718.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.25;ReadPosRankSum=-0.290;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr11	27412823	.	T	TG	140.80	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	27413855	rs1871251	T	C	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	27414071	rs369213743	GAA	G,GA	3343.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=6.656;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;MQRankSum=0.774;QD=18.89;ReadPosRankSum=1.266;SOR=1.236;set=HC	GT:AD:AF:DP	1/2:12,132,33:0.75,0.19:177
chr11	27679662	rs2353512	T	C	22314.77	.	AC=2;AF=1.00;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	1/1:0,848:1.00:848
chr11	27681596	rs11030102	C	G	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	27681915	rs117314519	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	27720937	rs66866077	C	T	20332.77	.	AC=2;AF=1.00;AN=2;DB;DP=825;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,797:1.00:797
chr11	27910923	rs6484341	T	A	8543.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	28045430	rs34088899	AT	A	674.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.09;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	28106058	rs997555	C	G	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	30253318	rs611246	A	T	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	30253641	rs609896	T	C	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	30255185	rs6169	C	T	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	30352473	rs35824273	C	CAG	4133.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	30358033	.	CT	C	967.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.337;QD=15.61;ReadPosRankSum=0.944;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:3,59:0.95:62
chr11	30433147	.	G	T	9034.77	.	AC=2;AF=1.00;AN=2;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr11	30601733	rs66528013	CT	C	3301.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	30900263	rs5790842	TA	T	420.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.691;QD=13.15;ReadPosRankSum=0.553;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr11	30902893	rs273613	T	C	4675.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	30922081	rs273560	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	30930393	rs175398	T	G	78.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	30953608	rs163877	A	G	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	30965855	rs273605	A	T	11952.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:1,474:1.00:475
chr11	30974203	rs10767883	T	A	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	31123625	.	G	GA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.907;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.390;QD=2.46;ReadPosRankSum=0.273;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr11	31326420	rs2616821	T	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	31327316	rs2616815	C	T	9170.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	31327766	rs2761592	G	A	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	31458730	rs7479413	T	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	31648529	rs2273943	G	A	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	31653956	rs4922872	C	A	13453.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:1,518:1.00:519
chr11	31811460	.	CTT	C	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=8.109;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.907;QD=9.30;ReadPosRankSum=1.349;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:50,64:0.56:114
chr11	31811645	.	C	CAAAA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.55;ReadPosRankSum=-0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr11	31812582	rs2071754	C	T	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	31814879	rs3026384	G	A	7952.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	31838252	rs5790869	C	CG	1376.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	32113057	rs223045	A	G	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	32118665	.	C	CT,CTT	2594.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=7.894;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.02;MQRankSum=0.566;QD=12.01;ReadPosRankSum=0.992;SOR=1.548;set=HC	GT:AD:AF:DP	1/2:59,66,91:0.31,0.42:216
chr11	32118925	rs223073	A	G	4990.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr11	32119030	rs223072	T	C	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	32122268	rs223065	C	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	32124579	rs223060	C	T	11739.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr11	32124685	rs223059	G	A	15978.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr11	32125855	rs223058	A	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	32451978	rs370524588	CAG	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.531;QD=1.09;ReadPosRankSum=1.955;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr11	32452001	.	G	GGA	956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=2.068;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.716;QD=12.76;ReadPosRankSum=0.188;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:27,48:0.64:75
chr11	32460624	rs3087923	G	C	9278.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	32610467	rs11031885	G	C	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	32610726	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=-0.806;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr11	32615352	rs66536432	A	AT	1277.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=2.160;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	32657266	rs201854	T	C	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	32676631	.	A	ATTTC	52	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=2;MGOF=3;MMLQ=25;MQ=61.78;NF=0;NR=3;PP=52;QD=25.0;SC=AATTTGTTATAATTCCCTTGC;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=32676639;WS=32676621;set=Platypus	GT:AD:AF:DP	1/1:3,3:0.50:6
chr11	32697291	rs7116464	A	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	32704946	rs1396995	C	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	32724611	rs4756174	C	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	32781829	rs11442361	G	GA	85.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	32949463	rs146740108	A	AT	487.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr11	32954344	rs1022586	G	A	8920.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	32956244	rs7940077	A	G	8564.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	32956620	rs7481878	A	G	9533.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	32975333	rs7395190	T	G	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	32990842	rs6416072	G	T	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	33005708	rs184830540	G	A	6395.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	33014668	rs7941237	G	A	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	33106908	rs3834432	C	CTTTATAG	4095.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	33113653	rs7950763	T	C	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	33113910	rs113144162	A	AT	2946.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=24.56;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	33118529	rs11363325	GC	G	2432.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	33123981	.	C	A	2888.77	.	AC=2;AF=1.00;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	33183017	rs3736213	A	G	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	33307937	.	CTTT	C,CT	2108.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=2.311;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.82;MQRankSum=-0.101;QD=18.66;ReadPosRankSum=0.544;SOR=1.771;set=HC	GT:AD:AF:DP	1/2:22,42,49:0.37,0.43:113
chr11	33360783	rs3847592	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	33360886	rs5790925	AT	A	4978.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	33362723	rs266470	G	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	33363057	rs80111299	C	T	8945.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	33370884	rs4756641	G	A	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	33374613	.	AT	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=2.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-1.428;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:144,36:0.20:180
chr11	33640104	rs768474	A	C	10399.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr11	33667333	rs1033543	A	G	19816.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:2,776:1.00:778
chr11	33667596	rs1033542	T	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	33680249	rs11032332	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	33680263	rs12226271	A	T	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	33680371	rs12280103	C	T	12977.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	33680613	rs2295064	A	G	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	33719821	rs831611	T	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	33719850	rs831612	A	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	33773161	rs7479064	G	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	33775982	rs2272065	A	G	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	33881016	rs3740617	T	C	7744.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	33886547	rs3824848	C	T	7060.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	34093349	rs10718447	AT	A	1266.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	34101452	rs377455073	GTTTTTTTTTTTTTTTTT	G	395.84	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.34;MQRankSum=1.810;QD=35.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr11	34107785	rs4755360	G	A	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	34110830	.	CAAAA	C	142.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.61;MQRankSum=-0.000;QD=23.82;ReadPosRankSum=0.431;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr11	34113717	rs2982592	C	T	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	34129607	.	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=1.850;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	34149199	rs2957512	T	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	34152939	rs2957516	T	C	11909.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr11	34154641	rs2957518	C	T	24092.77	.	AC=2;AF=1.00;AN=2;DB;DP=940;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,930:1.00:930
chr11	34158411	rs2982615	A	G	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	34158431	rs2957521	T	C	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	34163705	rs2982612	T	C	8637.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	34176214	rs2957525	A	G	5119.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	34188981	rs7120870	CA	TG	8179.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;JOINED;set=Intersection	GT:AD:AF:DP	1/1:1,184:0.99:185
chr11	34189564	rs4756111	A	G	16624.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.959;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.89;ReadPosRankSum=-1.309;SOR=0.064;set=HC	GT:AD:AF:DP	1/1:3,693:1.00:696
chr11	34226041	rs2955944	A	G	14682.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr11	34378381	rs1925368	G	C	18621.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr11	34460704	rs10836235	C	T	5911.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	34470679	rs769218	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	34482908	rs769217	C	T	13575.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr11	34492443	rs17881488	C	A	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	34492747	rs12803540	T	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	34678435	rs435537	C	G	7566.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	34680053	rs3818514	G	A	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	34680598	rs11032804	C	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	34904399	rs2288667	C	T	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	34904509	rs2288668	T	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	34905145	rs2303957	T	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	34909827	rs35393135	GA	G	2253.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	34909833	rs61752923	A	C	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	34909926	rs1571133	T	G	8905.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	34910077	rs1571134	G	A	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	34910397	rs1977420	C	T	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	34910433	rs1977421	A	G	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.30;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	34911967	rs2303958	T	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	34912013	rs2303959	A	G	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	34912289	rs2915224	T	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	34916484	rs1326940	A	G	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	34916710	rs1326941	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	34916785	rs1326942	A	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	34918273	rs34774694	G	GCAA	6144.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:3,135:0.98:138
chr11	34918375	rs2986429	A	G	11710.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr11	34937813	rs2956114	G	A	19921.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	1/1:0,762:1.00:762
chr11	34937884	rs2956113	G	A	29397.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr11	34937901	rs2956112	A	G	27128.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr11	34937931	rs2956111	G	A	10753.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr11	34938115	rs2956110	C	A	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	34938265	rs2956109	C	T	6579.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	34953088	rs34345153	G	GT,GTT	1297.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.586;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.77;MQRankSum=0.847;QD=17.08;ReadPosRankSum=0.769;SOR=1.148;set=HC	GT:AD:AF:DP	1/2:10,49,17:0.64,0.22:76
chr11	34963224	rs2915190	C	T	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	34963416	rs2986407	T	C	4358.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.566;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.63;ReadPosRankSum=-0.945;SOR=0.262;set=HC	GT:AD:AF:DP	1/1:1,176:0.99:177
chr11	34978892	rs2243948	G	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	34982146	rs2732554	T	G	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	34982146	.	TTC	GTA	1555	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=26;MQ=59.98;NF=4;NR=27;PP=1555;QD=51.8860604794;SC=AAAGAGCTTATTCAGTCTTAA;SbPval=0.48;Source=Platypus;TC=35;TCF=4;TCR=31;TR=31;WE=34982156;WS=34982136;set=Platypus	GT:AD:AF:DP	1/1:4,31:0.89:35
chr11	34982148	rs2767036	C	A	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.80;SOR=2.560;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	34991727	rs497582	T	C	12832.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr11	34999484	rs733567	G	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	34999745	rs10768108	C	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	35161076	rs3751031	T	C	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	35161285	rs75624136	A	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	35198007	rs111607249	G	A	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	35198032	rs4756195	A	G	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	35198108	rs4756196	A	G	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	35223158	rs11033025	T	C	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	35226155	rs9666607	A	G	14919.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr11	35229673	rs1467558	T	C	15142.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,591:1.00:591
chr11	35244044	rs7116739	G	C	6999.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	35244058	rs7116432	A	G	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	35287000	.	G	GTT	633.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.433;QD=24.38;ReadPosRankSum=0.194;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr11	35302668	rs2236273	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	35323200	rs2273689	A	G	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr11	35344345	rs7115450	A	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	35441682	.	A	AT	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=1.268;QD=8.96;ReadPosRankSum=0.899;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:25,39:0.61:64
chr11	35453796	rs11344760	GC	G	1670.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	36031593	rs262404	G	A	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	36103381	rs3740962	A	G	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	36251046	rs4755444	G	A	5811.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	36293048	rs7107433	G	A	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	36298555	rs2289986	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	36311014	rs7939948	G	T	5472.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	36422792	rs330261	G	A	21714.77	.	AC=2;AF=1.00;AN=2;DB;DP=856;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,836:1.00:836
chr11	36453506	rs746761	T	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	36484208	rs514352	T	C	10319.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr11	36514054	.	A	AT	31	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=10;HapScore=2;MGOF=8;MMLQ=26;MQ=60.0;NF=2;NR=1;PP=31;QD=15.0;SC=TGATGTAAATATTTTTTTTTA;SbPval=0.83;Source=Platypus;TC=20;TCF=11;TCR=9;TR=3;WE=36514062;WS=36514044;set=Platypus	GT:AD:AF:DP	0/1:17,3:0.15:20
chr11	36514290	rs2303439	T	C	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	36516488	rs143141923	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	36518824	rs3830511	T	TA	3068.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=24.36;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	36595157	rs4151025	G	A	14455.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:1,557:1.00:558
chr11	36597480	rs145772007	G	A	5475.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	42209105	rs11416548	G	GA	1904.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:17,101:0.86:118
chr11	42262449	rs10837795	G	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	43340429	rs2270573	G	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	43342887	rs5743220	A	G	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	43357057	rs5743254	A	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	43413157	rs202071795	TTTGCG	T	74.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-0.785;QD=1.01;ReadPosRankSum=1.292;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr11	43413158	rs67884453	TTGCG	T	579.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.175;QD=7.43;ReadPosRankSum=0.531;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:31,47:0.60:78
chr11	43419087	rs59435306	C	CT	321.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=8.70;ReadPosRankSum=1.015;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:11,26:0.70:37
chr11	43419451	rs72077599	CGTGT	C,CGT	796.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.36;MQRankSum=-0.603;QD=19.43;ReadPosRankSum=1.403;SOR=0.813;set=HC	GT:AD:AF:DP	1/2:7,16,18:0.39,0.44:41
chr11	43421339	.	TA	T	972.73	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	43425855	rs17508921	A	G	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	43472693	rs79406295	G	A	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,122:0.98:124
chr11	43472746	rs11551137	C	T	8194.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.619;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=3.077;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.06;ReadPosRankSum=1.035;SOR=0.282;set=HC	GT:AD:AF:DP	1/1:1,326:1.00:327
chr11	43472895	rs6485426	G	C	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	43515304	rs12276980	C	G	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	43702581	rs4573669	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	43702615	rs4573668	G	C	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.20;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	43772549	rs12801203	A	G	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	43775734	rs4643069	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	43776481	rs7115919	C	T	8092.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.29;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	43852491	rs6485471	T	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	43861748	rs10734518	G	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.52;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	43911365	rs2434478	T	C	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	43940566	rs7926534	T	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	43940602	rs1130290	C	G	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	43954812	rs2434476	T	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	43964275	.	C	A	1310.77	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	44080210	rs2074051	T	C	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	44096238	rs178521	G	A	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	44096324	.	T	TTC	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=7.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.63;ReadPosRankSum=2.597;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr11	44096330	rs61491891	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=9.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.91;ReadPosRankSum=0.652;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	44096334	.	C	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=9.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.91;ReadPosRankSum=-0.783;SOR=4.047;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	44097226	rs178523	A	G	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	44104701	rs79395013	C	CCT	9025.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	44117898	rs11037860	T	G	5453.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	44146257	rs10769018	A	G	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	44151457	rs7125352	T	C	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	44151480	rs11037881	G	T	6133.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr11	44151577	rs11037882	T	A	15209.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr11	44255614	rs11037909	T	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	44257802	rs3740878	T	C	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr11	44289183	rs75147697	C	T	16734.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr11	44289289	rs10742699	A	G	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	44289312	rs10769024	C	G	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	44297054	rs10769028	T	C	27180.77	.	AC=2;AF=1.00;AN=2;DB;DP=1054;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,1044:1.00:1044
chr11	44297253	rs11037929	A	G	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	44297343	rs11037930	C	A	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	44608866	rs7930303	T	C	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	44609198	rs7102843	G	A	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	44636684	rs12788360	G	T	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	44636839	rs883752	C	T	12411.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr11	44640268	rs1139971	A	G	11793.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,465:1.00:465
chr11	44925359	rs11456363	C	CT	16845.73	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr11	44948052	rs835988	G	T	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	44950784	rs835990	G	A	8950.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	44959083	rs12792390	C	G	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	45204071	rs1078930	A	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	45230443	rs12226640	T	C	10113.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr11	45230862	rs3781705	C	A	17577.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,685:1.00:685
chr11	45234877	rs11038356	T	C	14883.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr11	45235433	rs3781704	G	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	45672261	rs3802762	A	G	7337.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,287:0.99:289
chr11	45832935	rs1139266	G	A	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	45834044	rs4756027	C	T	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	45834198	rs7943306	T	C	9025.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	45868850	rs11394694	C	CG	12003.73	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr11	45877529	rs2292913	A	G	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	45877688	rs2292912	C	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	45883914	rs4755343	T	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	45891508	rs4755345	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	45926445	rs2271847	T	C	33691.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=1328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=1.372;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:2,1313:1.00:1315
chr11	45935253	rs2271845	C	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	45935384	rs1132349	A	G	12044.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr11	45936035	rs3802758	G	A	11353.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr11	45937267	rs10742772	C	T	40413.77	.	AC=2;AF=1.00;AN=2;DB;DP=1550;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,1536:1.00:1536
chr11	45937968	rs3215273	CTA	C	1365.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	45944994	rs33927614	G	GC	5272.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	45949201	rs884668	C	T	10798.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr11	45949534	rs939105	C	T	13810.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,505:1.00:505
chr11	46070935	rs61882549	C	T	14380.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:1,547:1.00:548
chr11	46331806	rs10629837	T	TTTTG	2631.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=43.14;SOR=2.119;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	46332893	rs4625425	T	G	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	46342081	rs67946579	TG	T	8107.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	46342259	rs79068197	A	AG	23421.73	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr11	46369267	rs114974750	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-3.141;QD=3.30;ReadPosRankSum=1.756;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr11	46387868	rs1317826	A	G	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	46391602	rs12575519	T	G	16006.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr11	46392825	rs10838601	C	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	46393958	rs7936413	T	C	5968.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	46396479	rs2046768	T	C	13557.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	46397323	rs3740974	A	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	46398916	rs34406563	T	C	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	46399538	rs2279465	T	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	46404340	rs74916763	GCCCC	G,GC	4209.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=11.635;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;MQRankSum=0.310;QD=34.79;ReadPosRankSum=1.427;SOR=5.238;set=HC	GT:AD:AF:DP	1/2:1,40,80:0.33,0.66:121
chr11	46406767	rs2067482	G	A	24916.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=997;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.085;QD=25.35;ReadPosRankSum=-1.256;SOR=0.483;set=HC	GT:AD:AF:DP	1/1:3,980:1.00:983
chr11	46515902	rs3802888	A	G	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	46534546	rs3802890	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	46567475	rs61882746	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	46569434	rs58268270	CA	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.435;QD=0.97;ReadPosRankSum=-0.636;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:131,41:0.24:172
chr11	46666805	rs61884275	A	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	46678462	rs150786219	C	CACACAT	1195.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	46694313	rs67065551	GTC	G	8505.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.53;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	46702691	rs4319473	G	A	7328.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:1,303:1.00:304
chr11	46702920	rs4268467	T	C	10284.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	46722731	rs4752928	T	C	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	46741908	rs3136433	C	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	46742249	rs3136434	T	C	19298.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=788;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.70;ReadPosRankSum=0.981;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:2,749:1.00:751
chr11	46742489	rs3136436	A	G	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	46749648	rs5898	G	A	10679.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,424:1.00:424
chr11	46750064	rs3136472	C	G	93.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	46760466	rs3136515	G	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	46776697	rs4237546	A	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	46781718	rs10466476	A	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	46784697	rs7928445	A	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	46799174	rs11300195	GC	G	5136.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	46802094	rs6485691	C	A	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	46837625	rs59649961	AC	A	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=44.09;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	46837631	.	CCA	C	706	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=6;HapScore=1;MGOF=1;MMLQ=27;MQ=60.17;NF=19;NR=8;PP=706;QD=27.0740740741;SC=AACGACCCCCCCATTCCCCCC;SbPval=0.56;Source=Platypus;TC=27;TCF=19;TCR=8;TR=27;WE=46837642;WS=46837621;set=Platypus	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	46837633	rs58152993	AT	A	1930.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=42.91;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	46837634	.	T	A	695	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=27;MQ=60.15;NF=25;NR=8;PP=695;QD=22.1142791681;SC=GACCCCCCCATTCCCCCCAAC;SbPval=0.49;Source=Platypus;TC=35;TCF=27;TCR=8;TR=33;WE=46837642;WS=46837621;set=Platypus	GT:AD:AF:DP	1/1:2,33:0.94:35
chr11	46842841	rs7106323	C	A	4819.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	46889719	rs12273360	T	C	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	46911704	rs2306036	C	T	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	46914583	rs10838631	T	C	8604.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	46914598	rs10769215	A	G	5795.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,231:0.99:233
chr11	46917983	rs898604	G	A	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	46958299	rs17787930	G	T	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	46969616	rs2867207	T	C	6130.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	47009041	.	G	GT	256.74	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	47181040	rs1965952	G	A	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	47185510	rs4752969	A	G	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	47187067	rs7117346	G	A	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=36.70;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	47187071	.	GAA	G,GA	1226.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=1.257;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.407;QD=12.65;ReadPosRankSum=1.276;SOR=0.440;set=HC	GT:AD:AF:DP	1/2:11,28,58:0.29,0.60:97
chr11	47188314	rs4752820	T	C	6934.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	47189416	rs60076400	T	TA	2198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=1.517;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:50,139:0.74:189
chr11	47193367	rs57323109	T	G	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	47196982	rs2279439	C	T	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	47201924	rs11039119	G	A	31643.77	.	AC=2;AF=1.00;AN=2;DB;DP=1231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,1192:1.00:1192
chr11	47203904	rs10838664	G	A	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	47238522	rs326212	T	C	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	47238665	rs326211	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=25.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	47251199	rs830085	G	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	47251369	rs11376360	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=5.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=0.353;SOR=1.793;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr11	47259668	rs326222	T	C	16188.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,631:1.00:631
chr11	47267408	.	C	CGT,CGTGT	2348.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=102;set=Intersection	GT:AF:DP	1/2:0.17,0.77:66
chr11	47283415	rs41275186	A	G	9876.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	47298360	rs326214	G	A	14558.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.280;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=-0.045;SOR=0.371;set=HC	GT:AD:AF:DP	1/1:1,572:1.00:573
chr11	47303401	rs142080041	C	CTTTTTTTTTTT	622.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;QD=41.52;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	47307332	rs148495681	G	GTCATTA	186.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.37;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	47331116	rs1017594	T	C	6679.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	47362431	rs2697926	A	G	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	47364762	rs896818	A	G	9319.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr11	47371484	rs11570050	AG	A	11365.73	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=34.03;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	47371598	rs3729986	C	T	10502.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.25;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chr11	47380061	rs10734557	A	C	8617.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	47380340	rs3740688	G	T	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	47380688	rs35284836	GGAA	G	863.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	47431728	rs2010519	A	G	11945.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr11	47432034	rs755554	G	C	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	47434986	rs2293576	G	A	17933.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr11	47436531	rs11039228	G	T	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	47440758	rs2293579	G	A	13842.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:1,520:1.00:521
chr11	47447346	rs10838709	C	T	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	47460098	rs10769267	C	T	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	47460306	rs7126210	A	G	15579.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,598:1.00:598
chr11	47462837	rs10716680	AG	A	4200.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	47463483	rs34729771	AG	A	2463.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	47469439	rs7111873	A	G	21007.77	.	AC=2;AF=1.00;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	1/1:0,821:1.00:821
chr11	47500677	.	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=1.716;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr11	47587577	rs58926533	TC	T	6494.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	47598846	.	GAAT	G	952.73	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	47609142	.	G	A	3987.77	.	AC=2;AF=1.00;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	47609867	rs4486587	G	A	17834.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr11	47611316	rs10769279	C	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	47640429	rs1064608	G	C	9370.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.53;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	47684450	rs6485766	C	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	47701528	rs12286721	C	A	7144.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=25.25;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	47727193	rs11418886	C	CA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.443;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr11	47732461	rs60310587	CA	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=2.089;QD=7.34;ReadPosRankSum=0.000;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	47736314	rs4752863	C	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	47755552	rs147094173	C	CA	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.724;QD=3.77;ReadPosRankSum=1.813;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:47,31:0.40:78
chr11	47758449	rs34910028	T	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.13;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	47767836	.	CTCT	C	19128.73	.	AC=2;AF=1.00;AN=2;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.28;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,432:1.00:432
chr11	47772401	rs11039366	C	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	47776047	rs7928954	G	A	6596.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	47802092	rs72169400	CT	C	584.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=2.719;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:17,52:0.75:69
chr11	47813436	rs10742821	C	T	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	47828404	rs3837374	C	T	226.90	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr11	47834592	rs7110289	G	A	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	47837638	rs7130715	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	47840864	rs71308358	C	CA	773.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-0.213;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:28,55:0.66:83
chr11	47843133	rs7122182	A	C	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	47869200	rs148902006	T	TG	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=0.135;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr11	48118199	rs4752806	G	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	48118347	rs11382316	T	TA	7670.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	48142528	.	ATT	A,AT	1046.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.391;QD=11.38;ReadPosRankSum=1.448;SOR=0.906;set=HC	GT:AD:AF:DP	1/2:13,23,56:0.25,0.61:92
chr11	48145247	rs2270992	T	C	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	48157869	rs2270994	T	C	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	48166267	rs4752904	G	C	7011.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	48170870	rs4752908	T	G	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	48171793	rs10734565	T	C	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	48184971	rs3830431	CCTTT	C	20109.73	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr11	48184983	rs2270990	G	T	21262.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr11	48186110	rs60806872	AT	A	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=6.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.552;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr11	48238302	rs1566737	G	T	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	48238421	rs10769329	T	G	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr11	48266582	rs7120549	A	C	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	48267589	rs1503180	A	G	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	48285301	rs713325	A	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	48285524	.	C	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DP=322;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.882;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:257,50:0.16:307
chr11	48285842	rs1503193	A	G	16847.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr11	48285856	rs10838850	C	T	15853.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:1,608:1.00:609
chr11	48285981	rs76884411	CCTT	C	35139.73	.	AC=2;AF=1.00;AN=2;DB;DP=820;set=Intersection	GT:AD:AF:DP	1/1:0,788:1.00:788
chr11	48286231	rs10838851	T	A	9999.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr11	48286256	rs10838852	C	T	8185.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	48346450	rs79776366	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.624;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr11	48346458	rs77295176	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=0.932;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr11	48346487	rs33950768	TC	T	726.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:53,19:0.26:72
chr11	48346513	rs78206553	T	C	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.760;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=11.204;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.406;QD=8.33;ReadPosRankSum=0.103;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:88,31:0.26:119
chr11	48346523	rs72911451	C	T	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.225;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=7.564;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.491;QD=8.17;ReadPosRankSum=0.543;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:113,37:0.25:150
chr11	48346535	rs76964780	G	C	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=6.131;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.399;QD=8.37;ReadPosRankSum=-0.396;SOR=1.181;set=HC	GT:AD:AF:DP	0/1:145,51:0.26:196
chr11	48346541	rs75498992	A	T	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.922;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=5.758;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.433;QD=9.03;ReadPosRankSum=0.065;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:167,57:0.25:224
chr11	48346547	rs79042268	C	T	2306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.851;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=8.529;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.333;QD=9.05;ReadPosRankSum=-0.495;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:186,69:0.27:255
chr11	48346551	rs77470587	C	A	2329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.615;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=8.276;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.360;QD=8.73;ReadPosRankSum=-0.139;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:196,71:0.27:267
chr11	48346579	rs72911452	C	A	4766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.003;QD=11.01;ReadPosRankSum=-1.579;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:301,132:0.30:433
chr11	48346588	rs75900655	A	C	5722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.002;QD=11.54;ReadPosRankSum=-1.495;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:338,158:0.32:496
chr11	48346604	rs75647397	T	G	6951.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:385,203:0.35:588
chr11	48346615	rs73463988	G	A	7539.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:421,224:0.35:645
chr11	48346660	rs138704181	TTTGCTGATC	T	8112.73	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:454,227:0.33:681
chr11	48346681	rs78490540	G	A	6598.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:423,232:0.35:655
chr11	48346729	rs73463990	G	C	5651.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:370,291:0.44:661
chr11	48346791	rs73463994	C	T	7645.77	.	AC=1;AF=0.500;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	0/1:497,386:0.44:883
chr11	48346822	rs73463997	A	C	8393.77	.	AC=1;AF=0.500;AN=2;DB;DP=984;set=Intersection	GT:AD:AF:DP	0/1:538,439:0.45:977
chr11	48346843	rs73463998	C	T	8346.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:524,428:0.45:952
chr11	48346916	rs77069283	G	C	13030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.909;QD=16.88;ReadPosRankSum=2.480;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:424,348:0.45:772
chr11	48346924	rs72911454	T	C	13243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.883;QD=16.96;ReadPosRankSum=3.328;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:440,341:0.44:781
chr11	48346932	rs80285195	G	A	12953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.891;QD=16.52;ReadPosRankSum=1.397;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:438,346:0.44:784
chr11	48346961	rs75493089	AA	TG	12394.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;JOINED;set=Intersection	GT:AD:AF:DP	0/1:491,332:0.40:823
chr11	48346999	rs72473367	T	G	7579.77	.	AC=1;AF=0.500;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	0/1:519,366:0.41:885
chr11	48347014	rs72473368	G	A	13458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=916;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=0.838;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:530,373:0.41:903
chr11	48347023	rs67077733	C	T	13475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=882;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=0.538;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:500,366:0.42:866
chr11	48347067	rs73464001	C	T	5955.77	.	AC=1;AF=0.500;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	0/1:458,315:0.41:773
chr11	48347100	rs73465905	C	T	8673.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:475,265:0.36:740
chr11	48347124	rs79019124	A	G	8862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-0.583;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:445,240:0.35:685
chr11	48347130	rs77395846	C	G	8731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=0.611;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:437,218:0.33:655
chr11	48347140	rs10838874	T	C	8049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.859;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=0.475;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:442,219:0.33:661
chr11	48347142	rs79891698	C	T	8023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.433;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=0.543;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:439,217:0.33:656
chr11	48347144	rs79124801	T	C	7801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.728;ClippingRankSum=0.000;DB;DP=659;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.050;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:431,218:0.34:649
chr11	48347267	rs73465910	T	C	4669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-0.276;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:391,263:0.40:654
chr11	48347306	rs73465911	G	T	4198.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:374,233:0.38:607
chr11	48347342	rs76958755	G	A	5694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-1.886;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:327,165:0.34:492
chr11	48347346	rs74590631	A	T	5600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-1.923;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:313,154:0.33:467
chr11	48347358	rs76274696	C	T	4957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-3.099;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:280,147:0.34:427
chr11	48347363	rs77814753	C	T	4742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-1.934;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:274,132:0.33:406
chr11	48347392	rs79127479	T	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:242,123:0.34:365
chr11	48347419	rs73465913	A	G	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:207,115:0.36:322
chr11	48347492	rs79775762	G	A	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=-0.934;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:74,59:0.44:133
chr11	48347498	rs78309417	A	T	1806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.71;ReadPosRankSum=-0.135;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:66,49:0.43:115
chr11	48347539	rs79172951	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr11	48347563	.	CT	C	104	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=7;HapScore=2;MGOF=78;MMLQ=27;MQ=54.45;NF=0;NR=4;PP=104;QD=31.25;SC=CCAAGCCTTACTTTTTTTGTA;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=4;WE=48347571;WS=48347553;set=Platypus	GT:AD:AF:DP	1/0:4,4:0.50:8
chr11	48347583	.	G	A	82	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5001;HP=2;HapScore=2;MGOF=137;MMLQ=26;MQ=53.67;NF=1;NR=4;PP=82;QD=23.3542425094;SC=ATCATGTATAGTTGTATTCCA;SbPval=0.8;Source=Platypus;TC=7;TCF=2;TCR=5;TR=5;WE=48347591;WS=48347573;set=Platypus	GT:AD:AF:DP	1/0:2,5:0.71:7
chr11	48349128	rs76530627	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.18;ReadPosRankSum=0.637;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr11	48349130	rs75661263	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.18;ReadPosRankSum=0.637;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr11	48349152	rs73465924	A	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=0.234;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr11	48349171	rs73465926	T	C	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=1.295;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr11	48349209	rs73465927	A	C	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=-0.022;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:55,33:0.38:88
chr11	48349230	rs74884553	G	A	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-1.230;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:90,53:0.37:143
chr11	48349252	rs76041098	G	A	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-2.772;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:106,72:0.40:178
chr11	48349312	rs79572913	A	G	2524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=14.85;ReadPosRankSum=0.947;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:101,69:0.41:170
chr11	48349316	rs76607933	T	A	2560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.81;ReadPosRankSum=0.330;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:94,68:0.42:162
chr11	48349320	rs77184441	A	T	2552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.47;ReadPosRankSum=1.307;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:89,66:0.43:155
chr11	48349329	rs76765071	C	A	2298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=1.304;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:78,58:0.43:136
chr11	48349377	rs72911466	A	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr11	48349389	rs79223613	A	C	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-0.144;SOR=1.899;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr11	48349391	rs76599777	TG	CA	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.327;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=8.908;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.071;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr11	48349394	rs78755709	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.707;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=6.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-0.334;SOR=2.349;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr11	48349407	rs72911467	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr11	48349425	rs79941850	T	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr11	48366895	rs72473369	A	C	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,35:0.43:82
chr11	48366958	rs76319939	T	G	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:195,124:0.39:319
chr11	48366971	rs75689989	G	C	5344.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.320;QD=13.23;ReadPosRankSum=1.260;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:256,148:0.37:404
chr11	48366971	.	GG	CA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=25;MMLQ=25;MQ=59.99;NF=44;NR=31;PP=2944;QD=20;SC=TTATTTTTGAGGGTGTAGATT;SbPval=0.43;Source=Platypus;TC=192;TCF=117;TCR=75;TR=75;WE=48366980;WS=48366948;set=Platypus	GT:AD:AF:DP	1/0:117,75:0.39:192
chr11	48366972	rs75621879	G	A	5344.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.343;QD=13.04;ReadPosRankSum=1.792;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:263,147:0.36:410
chr11	48367050	rs113897236	T	TAG	9492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.002;QD=13.28;ReadPosRankSum=2.528;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:450,265:0.37:715
chr11	48367073	rs7941588	A	C	28072.77	.	AC=2;AF=1.00;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	1/1:1,838:1.00:839
chr11	48367097	rs73453179	A	G	5667.77	.	AC=1;AF=0.500;AN=2;DB;DP=919;set=Intersection	GT:AD:AF:DP	0/1:589,326:0.36:915
chr11	48367133	rs79453749	C	A	10029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=902;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-0.348;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:610,288:0.32:898
chr11	48367136	rs78927905	C	T	9951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=891;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.168;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:609,279:0.31:888
chr11	48367155	rs75315666	T	A	7686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DB;DP=780;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=3.115;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:554,224:0.29:778
chr11	48367159	rs75667244	C	T	7573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=2.995;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:533,216:0.29:749
chr11	48367163	rs74650698	A	G	7457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DB;DP=741;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=2.980;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:527,212:0.29:739
chr11	48367170	rs77876442	G	A	7107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=2.513;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:509,206:0.29:715
chr11	48367190	rs78661795	A	T	7179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.968;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-0.349;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:455,205:0.31:660
chr11	48367195	rs79063955	C	T	7040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.178;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:445,200:0.31:645
chr11	48367249	rs74815769	C	T	6828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=0.544;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:340,187:0.35:527
chr11	48367252	rs76287086	G	A	6752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=0.422;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:338,192:0.36:530
chr11	48367311	rs73453180	T	C	3971.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:340,223:0.40:563
chr11	48367363	rs73453183	C	T	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:307,145:0.32:452
chr11	48367387	rs78788561	C	T	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.447;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:266,101:0.28:367
chr11	48367419	rs77576379	G	A	3179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.521;QD=8.76;ReadPosRankSum=-3.212;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:254,109:0.30:363
chr11	48367424	rs77976451	C	G	3128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.502;QD=9.02;ReadPosRankSum=-3.907;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:241,106:0.31:347
chr11	48367455	rs79175163	G	A	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:199,31:0.13:230
chr11	48367469	rs79686513	TG	CA	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=5.579;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.164;QD=6.98;ReadPosRankSum=0.540;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:176,53:0.23:229
chr11	48367474	rs75116918	A	G	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-3.180;QD=7.14;ReadPosRankSum=0.975;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:171,51:0.23:222
chr11	48367499	rs72896822	A	G	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=5.169;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.713;QD=3.70;ReadPosRankSum=-1.598;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:137,46:0.25:183
chr11	48367511	rs72896823	T	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:118,38:0.24:156
chr11	48373632	rs4882248	T	A	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	48373748	rs73453188	C	G	3023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=4.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=1.368;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:140,85:0.38:225
chr11	48373770	rs73453191	T	A	3420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-1.174;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:193,107:0.36:300
chr11	48373797	rs72896825	C	T	4851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.001;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.000;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:274,135:0.33:409
chr11	48373805	rs75618010	G	A	5431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=-0.328;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:284,146:0.34:430
chr11	48373815	rs74350365	A	G	5636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=-0.272;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:288,154:0.35:442
chr11	48373817	rs75951679	C	T	5777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=0.277;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:293,154:0.34:447
chr11	48373827	rs80081241	G	A	6164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=1.158;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:317,167:0.35:484
chr11	48373833	rs75965588	GA	AG	6043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=2.274;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:330,168:0.34:498
chr11	48373885	rs76292854	A	G	6302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.636;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-0.235;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:356,215:0.38:571
chr11	48373900	rs77877396	A	G	5899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=0.454;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:327,189:0.37:516
chr11	48373936	rs76304554	A	G	2935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.247;QD=7.04;ReadPosRankSum=-0.752;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:253,164:0.39:417
chr11	48373976	rs80225178	T	G	2539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.332;QD=12.33;ReadPosRankSum=1.261;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:131,75:0.36:206
chr11	48373986	rs12420054	A	G	2393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.234;QD=14.78;ReadPosRankSum=-0.143;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:97,65:0.40:162
chr11	48374000	rs112772888	C	CT	806.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,42:0.41:102
chr11	48374031	rs72896827	G	A	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.115;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=7.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-0.889;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:43,28:0.39:71
chr11	48374041	rs72896828	T	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.303;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-1.339;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr11	48386956	.	C	CA	239.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr11	48387098	rs77594589	A	C	7676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=17.10;ReadPosRankSum=-1.132;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:241,208:0.46:449
chr11	48387107	rs77606603	T	C	7873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=17.50;ReadPosRankSum=-0.226;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:247,203:0.45:450
chr11	48387115	rs75003399	G	A	7788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=17.12;ReadPosRankSum=0.642;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:253,202:0.44:455
chr11	48387118	rs79339252	G	A	7738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=16.93;ReadPosRankSum=0.507;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:253,204:0.45:457
chr11	48387154	rs72473370	A	G	6344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=14.76;ReadPosRankSum=2.477;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:255,175:0.41:430
chr11	48387164	rs72473371	G	A	6343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=15.55;ReadPosRankSum=0.732;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:240,168:0.41:408
chr11	48387186	rs1994140	A	G	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:117,202:0.63:319
chr11	48387201	rs77053100	G	A	2731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.093;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=10.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=1.734;SOR=1.243;set=HC	GT:AD:AF:DP	0/1:211,83:0.28:294
chr11	48387206	rs76817095	T	C	2764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.720;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=14.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.272;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:197,79:0.29:276
chr11	48387210	rs78428763	CC	TG	2659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=14.967;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.383;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:199,76:0.28:275
chr11	48387237	rs72898877	C	T	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.385;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=3.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-3.244;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:208,57:0.22:265
chr11	48387254	rs75441735	A	G	1549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=3.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-3.752;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:208,52:0.20:260
chr11	48387258	rs78030134	C	T	1669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=4.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-3.259;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:209,50:0.19:259
chr11	48387262	rs75430864	G	A	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=9.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-3.182;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:217,53:0.20:270
chr11	48387278	rs139139147	C	CACTGTCCTTCTGT	1828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.472;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=23.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-1.424;SOR=2.062;set=HC	GT:AD:AF:DP	0/1:223,49:0.18:272
chr11	48387284	.	G	GAGTCTTTAGTA	2827.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.301;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=39.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-1.076;SOR=2.491;set=HC	GT:AD:AF:DP	0/1:225,59:0.21:284
chr11	48387301	rs76220342	G	A	3088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=5.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-3.511;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:228,116:0.34:344
chr11	48387335	rs73460769	C	A	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:292,170:0.37:462
chr11	48387370	rs73460772	A	G	3998.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:329,217:0.40:546
chr11	48387424	rs61917478	G	T	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:402,227:0.36:629
chr11	48387490	rs77144540	G	A	7607.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:574,239:0.29:813
chr11	48387506	rs72898882	A	G	7523.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:603,211:0.26:814
chr11	48387526	rs78378263	G	T	7142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.401;QD=8.93;ReadPosRankSum=-0.763;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:594,206:0.26:800
chr11	48387535	rs72898883	T	C	6223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=779;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.488;QD=8.04;ReadPosRankSum=-0.011;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:585,189:0.24:774
chr11	48387540	rs72898885	G	T	6088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DB;DP=773;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.274;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:581,187:0.24:768
chr11	48387580	rs78299098	G	T	5801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.186;ClippingRankSum=0.000;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.764;QD=7.76;ReadPosRankSum=0.589;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:567,181:0.24:748
chr11	48387582	rs75027745	C	T	5843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.785;QD=7.82;ReadPosRankSum=1.188;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:569,178:0.24:747
chr11	48387584	rs75821991	A	T	5756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.790;QD=7.72;ReadPosRankSum=1.377;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:569,177:0.24:746
chr11	48387591	rs75297075	A	G	5969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.796;QD=7.74;ReadPosRankSum=1.560;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:589,182:0.24:771
chr11	48387604	rs72898886	C	T	5866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=779;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.750;QD=7.58;ReadPosRankSum=0.519;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:584,190:0.25:774
chr11	48387630	rs73460777	C	T	5371.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:543,178:0.25:721
chr11	48387647	rs75615667	A	G	5834.77	.	AC=1;AF=0.500;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	0/1:489,171:0.26:660
chr11	48387668	rs10769651	C	G	5626.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:432,163:0.27:595
chr11	48387679	rs76209049	A	G	5740.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:361,154:0.30:515
chr11	48387683	rs67755516	GT	G	5699.73	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:358,155:0.30:513
chr11	48387689	rs75371569	T	C	6011.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:349,166:0.32:515
chr11	48387705	rs34926479	C	T	5447.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:338,158:0.32:496
chr11	48387737	rs73460780	G	C	4494.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:331,199:0.38:530
chr11	48387757	rs74557904	A	C	4345.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:306,196:0.39:502
chr11	48387780	rs76329018	C	T	8943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=0.921;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:296,233:0.44:529
chr11	48387789	rs80222485	C	G	8901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=2.142;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:310,240:0.44:550
chr11	48387825	rs75650204	T	G	9204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=3.129;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:348,254:0.42:602
chr11	48387833	rs79515387	T	C	8958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=4.337;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:381,248:0.39:629
chr11	48387850	rs73460781	G	T	4114.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:443,240:0.35:683
chr11	48387890	rs74623688	T	C	7495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=3.475;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-3.045;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:440,217:0.33:657
chr11	48387894	rs75065468	C	T	7378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.809;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-2.075;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:444,203:0.31:647
chr11	48387900	rs74338058	G	A	7143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;ClippingRankSum=0.000;DB;DP=652;ExcessHet=3.0103;FS=3.530;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-2.532;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:445,199:0.31:644
chr11	48387917	rs66829866	AT	A	5623.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:414,158:0.28:572
chr11	48387919	rs114441034	G	A	5485.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:409,156:0.28:565
chr11	48387930	rs75939575	T	C	5134.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:386,148:0.28:534
chr11	48387945	rs139770813	C	CCA	4074.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:304,115:0.27:419
chr11	48387946	rs114053360	G	T	4086.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:295,110:0.27:405
chr11	48387960	rs79688019	T	C	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:262,96:0.27:358
chr11	48387978	rs78160589	T	A	2599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=8.75;ReadPosRankSum=3.015;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:222,75:0.25:297
chr11	48387983	rs75819836	T	C	2323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=9.22;ReadPosRankSum=2.740;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:186,66:0.26:252
chr11	48388047	rs75982328	T	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-1.773;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr11	48388047	.	TTA	CTG	657	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=1;MGOF=60;MMLQ=26;MQ=60.0;NF=8;NR=12;PP=657;QD=35.5233937431;SC=TTGGTCAGGATTATTTTCTGT;SbPval=0.15;Source=Platypus;TC=54;TCF=14;TCR=40;TR=20;WE=48388057;WS=48388037;set=Platypus	GT:AD:AF:DP	1/0:34,20:0.37:54
chr11	48388049	rs77697332	A	G	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-1.486;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr11	48388067	rs73460782	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr11	48388487	rs78414756	C	A	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	48388524	rs76789954	C	T	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.783;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr11	48388524	.	CAA	TAG	382	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=1;MGOF=43;MMLQ=27;MQ=60.0;NF=9;NR=0;PP=382;QD=48.3853194291;SC=ATTTCAGAATCAACTGAACTG;SbPval=1.0;Source=Platypus;TC=33;TCF=30;TCR=3;TR=9;WE=48388534;WS=48388514;set=Platypus	GT:AD:AF:DP	0/1:24,9:0.27:33
chr11	48388526	rs77473022	A	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.736;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=0.336;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr11	48388542	rs77282201	G	A	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.498;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-0.124;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr11	48388544	rs74346885	T	C	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=-0.206;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr11	48388553	rs80082776	C	G	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.587;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:62,31:0.33:93
chr11	48388563	rs77148147	CT	AG	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.435;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.769;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=0.352;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:92,40:0.30:132
chr11	48388567	rs79767657	A	C	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.089;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:102,46:0.31:148
chr11	48388571	rs79079495	C	T	2060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=3.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-0.281;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:116,53:0.31:169
chr11	48388583	rs77992774	A	T	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:150,75:0.33:225
chr11	48388610	rs79108820	T	G	4036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.418;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:222,112:0.34:334
chr11	48388612	rs76366705	T	C	4011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.634;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:226,113:0.33:339
chr11	48388614	rs146852809	T	C	4319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=1.430;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:231,115:0.33:346
chr11	48388621	rs75849499	ACA	GTC	4563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.581;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=2.921;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=1.790;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:268,125:0.32:393
chr11	48388641	rs80267937	G	A	6323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=0.638;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:349,170:0.33:519
chr11	48388657	rs80000751	G	A	7501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=-0.370;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:411,208:0.34:619
chr11	48388681	rs76712816	G	A	9039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=-3.721;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:436,245:0.36:681
chr11	48388698	rs77483743	C	T	8466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=-1.121;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:420,226:0.35:646
chr11	48388717	rs78132200	T	C	7361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-0.149;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:349,202:0.37:551
chr11	48388782	rs76039310	A	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,44:0.36:123
chr11	48388833	rs73460789	A	C	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr11	48453787	rs4882063	G	A	5781.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.16;MQRankSum=1.413;QD=24.50;ReadPosRankSum=2.595;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:4,232:0.98:236
chr11	48454154	.	A	C	15724.77	.	AC=2;AF=1.00;AN=2;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr11	48510654	rs7103557	A	C	11065.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:2,440:1.00:442
chr11	48510777	rs7103992	G	A	8129.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	48997278	rs113897686	G	C	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	48997592	rs1813231	C	T	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	49000423	rs1965370	C	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	49000522	rs1963629	C	T	8495.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=25.59;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	49002343	rs9783302	T	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	49056627	rs60632912	C	CT,CTT	2411.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.888;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.04;MQRankSum=-1.130;QD=13.47;ReadPosRankSum=-1.124;SOR=0.580;set=HC	GT:AD:AF:DP	1/2:35,84,60:0.47,0.34:179
chr11	49059362	rs2696914	C	A	10997.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:1,427:1.00:428
chr11	49075605	rs2851535	G	A	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	49076963	rs34650085	C	CAA	7021.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.021;QD=25.17;ReadPosRankSum=1.357;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:6,273:0.98:279
chr11	49077012	rs2773242	C	T	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=24.94;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	49077889	rs36015501	AT	A	3652.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	49080677	rs34947092	T	TA	755.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.633;QD=10.64;ReadPosRankSum=2.653;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:20,51:0.72:71
chr11	49140590	rs138552394	AG	A	3995.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	49145045	rs111676965	A	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	49146000	rs113731705	G	C	10897.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr11	49168512	rs149464210	G	A	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	49192905	rs34828796	GA	G	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-0.546;QD=4.02;ReadPosRankSum=-2.451;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr11	49196555	.	T	TA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=2.145;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=2.310;QD=0.33;ReadPosRankSum=0.515;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:102,20:0.16:122
chr11	49214499	rs4315497	G	A	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	49229488	.	AAAAC	A	8723.73	.	AC=2;AF=1.00;AN=2;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	49229778	rs76707037	G	A	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	49329552	rs1164670	G	A	9453.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr11	49356400	.	GT	G	38	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.7330;HP=14;HapScore=2;MGOF=2;MMLQ=27;MQ=62.65;NF=0;NR=4;PP=38;QD=10.5;SC=AGCTGTTCTGGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=4;WE=49356408;WS=49356390;set=Platypus	GT:AD:AF:DP	1/0:4,4:0.50:8
chr11	49372872	rs3915110	G	A	6696.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	49400965	rs3974576	T	C	5350.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.31;QD=25.85;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	49401125	rs7102702	T	G	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	49437043	rs7950270	C	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	49597799	rs7131345	C	T	10457.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	49598178	rs7101761	G	A	12097.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr11	49598209	rs7939515	T	C	11126.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr11	49637416	rs7125677	A	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	49655814	rs144145381	T	C	349.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.44;MQRankSum=0.093;QD=20.58;ReadPosRankSum=-2.231;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr11	49729155	rs7934809	G	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	49729190	rs140906567	C	G	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	49813442	rs7943083	A	G	94.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	49813637	rs11530434	A	G	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.99;QD=27.29;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	49974371	rs28662375	G	A	16170.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr11	51516278	rs202091349	AATC	A	2883.27	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:5,70:0.93:75
chr11	55541098	rs297118	G	A	9610.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	55563336	rs76383258	A	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.199;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:216,41:0.16:257
chr11	55563776	rs297054	T	G	16225.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr11	55563900	rs297055	T	C	9616.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:61,434:0.88:495
chr11	55587117	rs297082	T	A	4175.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	55587511	rs297081	A	G	13813.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr11	55595081	rs7102394	C	T	13366.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:35,548:0.94:583
chr11	55595324	rs7102663	C	T	7728.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:35,328:0.90:363
chr11	55606302	rs6591699	G	T	8256.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	55606693	rs6591700	G	A	9780.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:14,384:0.96:398
chr11	55656483	rs7483200	T	A	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	55681336	rs11231529	G	A	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:22,206:0.90:228
chr11	55681494	rs2457239	G	A	7893.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr11	55682111	rs2940752	T	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	55703981	rs35841857	T	TA	383.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	55734972	rs11231705	A	T	256.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	55746891	rs7481466	G	A	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	55761221	rs2449134	C	T	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	55761738	rs2128152	T	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	55762167	rs34270187	CA	C	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.656;QD=7.67;ReadPosRankSum=1.498;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr11	55798152	rs1482011	G	A	15695.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,619:1.00:619
chr11	55860780	rs1842700	G	A	11335.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr11	55872876	rs2512961	C	T	13205.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.533;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=3.544;MLEAC=2;MLEAF=1.000;MQ=59.54;MQRankSum=-0.470;QD=24.19;ReadPosRankSum=0.046;SOR=0.517;set=HC	GT:AD:AF:DP	1/1:3,543:0.99:546
chr11	55873024	rs2449148	A	G	27890.77	.	AC=2;AF=1.00;AN=2;DB;DP=1065;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=26.34;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,1059:1.00:1059
chr11	55873368	rs1842696	G	A	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	55889790	rs2035408	G	T	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	55890257	rs1842691	C	T	10334.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:2,419:1.00:421
chr11	56000403	rs10791893	C	G	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	56127746	rs7942390	A	G	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	56128081	rs10896290	A	G	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:18,185:0.91:203
chr11	56128524	rs7928704	C	T	13270.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,523:1.00:523
chr11	56128772	rs7938038	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr11	56128775	rs7938865	C	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.53;ReadPosRankSum=-0.319;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr11	56143103	rs200929810	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.892;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=24.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=-5.686;SOR=2.741;set=HC	GT:AD:AF:DP	0/1:328,27:0.08:355
chr11	56143108	rs74639624	C	G	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.904;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=24.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-5.218;SOR=2.579;set=HC	GT:AD:AF:DP	0/1:346,31:0.08:377
chr11	56143125	rs74467122	C	T	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-6.153;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:389,77:0.17:466
chr11	56143156	rs11228165	C	T	4873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=-2.152;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:438,146:0.25:584
chr11	56143158	rs11228166	A	G	3256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-2.211;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:444,149:0.25:593
chr11	56143198	rs80034856	C	T	5786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.373;QD=8.97;ReadPosRankSum=0.924;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:476,169:0.26:645
chr11	56143204	rs79445223	C	T	6000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.349;QD=9.06;ReadPosRankSum=1.250;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:486,176:0.27:662
chr11	56143207	rs75547926	C	T	6327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.316;QD=9.54;ReadPosRankSum=1.124;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:483,180:0.27:663
chr11	56143216	rs76044076	G	A	6933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.196;QD=10.21;ReadPosRankSum=0.161;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:480,199:0.29:679
chr11	56143225	rs77854836	CT	TC	7290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=1.912;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.152;QD=10.57;ReadPosRankSum=0.636;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:482,208:0.30:690
chr11	56143250	rs76390346	G	A	7256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.134;QD=10.59;ReadPosRankSum=3.867;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:476,209:0.31:685
chr11	56143252	rs75101573	G	A	7228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=687;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.146;QD=10.57;ReadPosRankSum=4.411;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:477,207:0.30:684
chr11	56143255	.	T	TGA	7368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DP=673;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.129;QD=11.00;ReadPosRankSum=4.585;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:465,205:0.31:670
chr11	56143257	rs77515824	C	A	7329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.117;QD=10.97;ReadPosRankSum=4.268;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:462,206:0.31:668
chr11	56143259	.	AGT	A	7227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DP=676;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.136;QD=10.74;ReadPosRankSum=4.310;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:468,205:0.30:673
chr11	56143357	rs76949582	G	A	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=4.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-5.718;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:254,36:0.12:290
chr11	56143360	rs79469149	C	T	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=5.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-5.925;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:251,31:0.11:282
chr11	56143408	rs79327545	C	T	2906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.510;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=23.974;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.698;QD=6.81;ReadPosRankSum=0.661;SOR=2.240;set=HC	GT:AD:AF:DP	0/1:335,92:0.22:427
chr11	56143411	rs77484944	T	C	2960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.362;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=19.230;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.710;QD=6.67;ReadPosRankSum=0.555;SOR=2.092;set=HC	GT:AD:AF:DP	0/1:349,95:0.21:444
chr11	56143414	rs74329097	CA	GG	3146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.116;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=21.178;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.683;QD=6.98;ReadPosRankSum=-0.365;SOR=2.166;set=HC	GT:AD:AF:DP	0/1:353,98:0.22:451
chr11	56143424	.	A	ACGGC	3572.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.961;ClippingRankSum=0.000;DP=486;ExcessHet=3.0103;FS=31.552;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.595;QD=7.37;ReadPosRankSum=-2.447;SOR=2.655;set=HC	GT:AD:AF:DP	0/1:374,111:0.23:485
chr11	56143425	.	TATCA	T	3602.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=13.923;ClippingRankSum=0.000;DP=494;ExcessHet=3.0103;FS=31.609;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.608;QD=7.31;ReadPosRankSum=-1.866;SOR=2.693;set=HC	GT:AD:AF:DP	0/1:381,112:0.23:493
chr11	56143432	rs78396581	A	G	3664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.595;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=33.574;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.566;QD=7.36;ReadPosRankSum=-3.748;SOR=2.742;set=HC	GT:AD:AF:DP	0/1:382,116:0.23:498
chr11	56143434	rs10791961	C	G	14555.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:25,484:0.95:509
chr11	56143489	rs74711788	AT	GA	9248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.743;ClippingRankSum=0.000;DB;DP=931;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.614;QD=9.99;ReadPosRankSum=-0.716;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:669,257:0.28:926
chr11	56143501	rs12272237	T	G	10250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.813;ClippingRankSum=0.000;DB;DP=1038;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-3.195;QD=9.93;ReadPosRankSum=-1.025;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:741,291:0.28:1032
chr11	56143508	rs10791962	A	T	11054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.772;ClippingRankSum=0.000;DB;DP=1092;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-3.565;QD=10.19;ReadPosRankSum=-0.888;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:778,307:0.28:1085
chr11	56143510	rs10791963	T	C	11378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.757;ClippingRankSum=0.000;DB;DP=1110;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-3.550;QD=10.32;ReadPosRankSum=-0.961;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:789,314:0.28:1103
chr11	56143528	rs10791964	A	G	12654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.377;ClippingRankSum=0.000;DB;DP=1225;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.693;QD=10.41;ReadPosRankSum=0.365;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:860,356:0.29:1216
chr11	56143534	rs78854227	A	G	12797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.717;ClippingRankSum=0.000;DB;DP=1249;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.729;QD=10.33;ReadPosRankSum=1.640;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:883,356:0.29:1239
chr11	56143537	rs74691432	A	T	12617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.888;ClippingRankSum=0.000;DB;DP=1334;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.835;QD=9.53;ReadPosRankSum=3.755;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:964,360:0.27:1324
chr11	56143539	rs75226392	T	C	12869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.845;ClippingRankSum=0.000;DB;DP=1362;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.828;QD=9.52;ReadPosRankSum=3.624;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:983,369:0.27:1352
chr11	56143543	rs76579014	TT	CC	13000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.217;ClippingRankSum=0.000;DB;DP=1397;ExcessHet=3.0103;FS=2.813;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.814;QD=9.38;ReadPosRankSum=3.369;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:1005,381:0.27:1386
chr11	56143556	rs80334520	T	A	14604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.109;ClippingRankSum=0.000;DB;DP=1496;ExcessHet=3.0103;FS=9.513;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.768;QD=9.83;ReadPosRankSum=2.582;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:1067,418:0.28:1485
chr11	56143559	rs74603674	C	T	14625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.868;ClippingRankSum=0.000;DB;DP=1520;ExcessHet=3.0103;FS=10.826;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.781;QD=9.69;ReadPosRankSum=2.779;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:1087,422:0.28:1509
chr11	56143561	rs75242425	AA	GG	14856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=16.362;ClippingRankSum=0.000;DB;DP=1529;ExcessHet=3.0103;FS=10.826;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.774;QD=9.79;ReadPosRankSum=2.538;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:1092,426:0.28:1518
chr11	56143564	rs77640279	G	T	17532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.061;ClippingRankSum=0.000;DB;DP=1545;ExcessHet=3.0103;FS=12.507;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.758;QD=11.43;ReadPosRankSum=1.994;SOR=1.497;set=HC	GT:AD:AF:DP	0/1:1100,434:0.28:1534
chr11	56143570	rs11228169	A	G	17839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.238;ClippingRankSum=0.000;DB;DP=1717;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.435;QD=10.46;ReadPosRankSum=-5.343;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:1132,573:0.34:1705
chr11	56143690	rs4990123	C	A	11494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.374;ClippingRankSum=0.000;DB;DP=865;ExcessHet=3.0103;FS=5.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-1.579;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:516,327:0.39:843
chr11	56143696	rs4990122	C	T	10979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.560;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=5.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-0.951;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:511,294:0.37:805
chr11	56143699	rs4990121	T	G	10547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.298;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=4.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=-1.404;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:502,283:0.36:785
chr11	56143716	rs10896309	TG	CA	8064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.344;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=9.358;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.985;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:450,198:0.31:648
chr11	56143723	rs12272349	T	C	6583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.082;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=5.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-2.046;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:430,186:0.30:616
chr11	56143725	rs77042014	C	G	6505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.236;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=4.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=-2.404;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:428,185:0.30:613
chr11	56143729	rs55888197	CC	TG	6253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.831;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=3.632;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=-2.913;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:407,173:0.30:580
chr11	56143762	rs79307272	C	T	3191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=4.049;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.542;QD=7.32;ReadPosRankSum=-0.367;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:333,103:0.24:436
chr11	56143767	rs79705206	C	T	3256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.521;QD=7.79;ReadPosRankSum=-0.678;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:318,100:0.24:418
chr11	56143782	.	T	TGA	2559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.309;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=6.703;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-3.747;QD=6.79;ReadPosRankSum=1.118;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:293,84:0.22:377
chr11	56143784	.	CAT	C	2634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.742;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=11.474;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-4.019;QD=6.92;ReadPosRankSum=2.820;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:305,76:0.20:381
chr11	56143795	.	G	A	2214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.989;ClippingRankSum=0.000;DP=340;ExcessHet=3.0103;FS=9.411;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.791;QD=6.55;ReadPosRankSum=2.057;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:264,74:0.22:338
chr11	56143803	rs202193035	AG	GC	2167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=4.655;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-3.806;QD=6.84;ReadPosRankSum=2.004;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:248,69:0.22:317
chr11	56143807	rs201727202	G	A	2113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=3.808;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-3.760;QD=6.80;ReadPosRankSum=1.384;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:242,69:0.22:311
chr11	56143810	rs201982103	T	C	2113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=4.735;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-3.808;QD=6.86;ReadPosRankSum=1.514;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:241,67:0.22:308
chr11	56143816	rs111512467	G	C	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=3.984;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-3.943;QD=6.34;ReadPosRankSum=2.087;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:243,63:0.21:306
chr11	56143819	rs113312059	G	C	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-3.999;QD=5.99;ReadPosRankSum=2.229;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:242,61:0.20:303
chr11	56143823	rs77614949	G	A	1711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-4.120;QD=5.76;ReadPosRankSum=2.701;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:240,57:0.19:297
chr11	56143858	rs78068762	G	C	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=7.509;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.054;QD=4.47;ReadPosRankSum=-0.403;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:252,54:0.18:306
chr11	56143864	rs111260371	C	G	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.573;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=6.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.038;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:254,48:0.16:302
chr11	56143867	rs111341120	T	C	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=5.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.078;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:252,46:0.15:298
chr11	56143882	rs113061820	G	A	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.323;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=4.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.223;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:252,37:0.13:289
chr11	56143885	rs111871244	T	A	748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.855;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=6.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-1.002;SOR=1.212;set=HC	GT:AD:AF:DP	0/1:243,37:0.13:280
chr11	56143891	rs112265664	T	A	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.751;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-1.822;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:243,37:0.13:280
chr11	56143898	rs373392784	G	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.354;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=4.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-1.807;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:236,34:0.13:270
chr11	56143900	rs202086525	C	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.712;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-1.422;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:237,32:0.12:269
chr11	56143903	.	G	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.957;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-1.362;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:233,31:0.12:264
chr11	56143906	rs201664860	C	T	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-1.334;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:234,31:0.12:265
chr11	56143907	rs374830614	A	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.698;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-1.419;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:234,31:0.12:265
chr11	56143936	rs72925527	A	G	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-1.565;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:205,28:0.12:233
chr11	56143942	rs72925528	C	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=4.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-1.742;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:196,22:0.10:218
chr11	56143966	rs12291978	C	T	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:14,148:0.91:162
chr11	56143976	.	C	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.027;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=18.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=1.467;SOR=3.846;set=HC	GT:AD:AF:DP	0/1:120,11:0.08:131
chr11	56143977	rs12272403	A	G	3229.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:4,120:0.97:124
chr11	56143981	.	T	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.932;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=15.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.547;SOR=3.667;set=HC	GT:AD:AF:DP	0/1:87,10:0.10:97
chr11	56143984	.	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.547;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=12.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.375;SOR=3.446;set=HC	GT:AD:AF:DP	0/1:74,9:0.11:83
chr11	56143987	rs199932239	G	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=12.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.205;SOR=3.300;set=HC	GT:AD:AF:DP	0/1:66,9:0.12:75
chr11	56143990	.	G	A	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=7.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.022;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:55,7:0.11:62
chr11	56143996	rs201080515	A	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=5.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-0.535;SOR=2.322;set=HC	GT:AD:AF:DP	0/1:41,6:0.13:47
chr11	56143999	.	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=5.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.018;SOR=2.108;set=HC	GT:AD:AF:DP	0/1:40,5:0.11:45
chr11	56185159	rs7930678	A	G	8591.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:26,360:0.93:386
chr11	56185327	rs7933772	T	C	7299.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:18,294:0.94:312
chr11	56185345	rs6591324	A	G	8151.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	56185689	rs7931261	A	G	8514.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:22,355:0.94:377
chr11	56237410	rs617315	A	G	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:13,172:0.93:185
chr11	56237722	rs605734	T	A	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:16,155:0.91:171
chr11	56238047	rs35496190	A	G	349.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.44;ReadPosRankSum=-0.676;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr11	56310222	rs628524	C	T	7889.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	56310877	rs66945922	C	CTT	411.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	56344260	rs10896488	A	G	9391.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.466;QD=20.82;ReadPosRankSum=-0.629;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:45,406:0.90:451
chr11	56344993	rs10792043	C	A	8254.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	56380546	rs72003051	CCAGA	C	12580.73	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:35,305:0.90:340
chr11	56431216	rs11228710	C	T	8087.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	56467757	.	CACG	C	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.39;ReadPosRankSum=-0.967;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr11	56467763	.	A	AGAT	271.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.349;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.98;ReadPosRankSum=-0.000;SOR=2.765;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	56467764	rs78916686	C	T	280.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.187;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.52;ReadPosRankSum=0.855;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr11	56467787	rs74218731	A	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr11	56467810	rs76085479	A	T	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.713;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=1.782;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr11	56467813	rs77180330	A	G	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.74;ReadPosRankSum=1.086;SOR=1.261;set=HC	GT:AD:AF:DP	0/1:32,35:0.52:67
chr11	56467816	rs78119960	G	T	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.88;ReadPosRankSum=1.311;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr11	56467819	rs78036340	A	G	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.267;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.02;ReadPosRankSum=1.468;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:36,37:0.51:73
chr11	56467833	rs73474897	T	C	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr11	56467881	rs73474900	T	C	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:161,169:0.51:330
chr11	56467926	rs1704284	A	G	4962.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:235,235:0.50:470
chr11	56468020	rs532637	TG	CA	6972.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;JOINED;set=Intersection	GT:AD:AF:DP	0/1:258,186:0.42:444
chr11	56468044	rs3975155	T	G	14858.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.08;QD=47.02;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	56468047	rs2865519	AC	GT	13999.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=58.01;QD=45.45;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	56468111	rs602224	C	T	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:163,97:0.37:260
chr11	56468198	rs4990194	A	G	11834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-3.418;QD=18.97;ReadPosRankSum=-0.266;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:319,305:0.49:624
chr11	56468200	rs4990195	C	T	12140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-3.455;QD=19.24;ReadPosRankSum=0.456;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:326,305:0.48:631
chr11	56468202	rs4990196	G	A	12552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-3.474;QD=19.52;ReadPosRankSum=0.883;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:334,309:0.48:643
chr11	56468212	rs591369	G	A	12488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-3.670;QD=17.39;ReadPosRankSum=2.210;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:377,341:0.47:718
chr11	56468259	rs503776	C	T	8962.77	.	AC=1;AF=0.500;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	0/1:421,447:0.51:868
chr11	56468817	rs74605930	G	T	3971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=5.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=1.308;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:114,102:0.47:216
chr11	56468819	rs78460796	CC	TT	3971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.263;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=7.113;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=0.767;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:112,103:0.48:215
chr11	56468828	rs530142	G	C	3500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=5.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=0.614;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:90,88:0.49:178
chr11	56468832	rs79579174	G	T	3227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.10;ReadPosRankSum=0.318;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:86,83:0.49:169
chr11	56468835	rs588308	G	T	3212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=7.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.86;ReadPosRankSum=-0.574;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:75,79:0.51:154
chr11	56468870	.	GTG	ACA	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=12.976;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=0.831;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:37,28:0.43:65
chr11	56468877	.	G	A	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=6.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=1.870;SOR=1.810;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr11	56468881	.	C	T	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.542;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=4.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=1.354;SOR=1.453;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr11	56468883	.	T	C	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.979;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=0.912;SOR=1.367;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr11	56468893	rs79757227	G	A	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=0.749;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr11	56468897	.	G	C	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=0.489;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr11	56468909	rs79696743	TG	CA	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr11	56508525	rs556056	A	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:8,82:0.91:90
chr11	56508604	rs545081	T	C	5792.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:18,145:0.89:163
chr11	56508619	rs545772	G	A	5795.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:19,144:0.88:163
chr11	56510623	rs513873	A	G	7969.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:27,325:0.92:352
chr11	56510672	rs577576	T	C	10792.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	56570012	rs552409	C	T	10576.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:41,448:0.92:489
chr11	56570095	rs483365	A	T	8233.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:21,337:0.94:358
chr11	56570229	rs550500	G	A	1730.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.733;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.08;ReadPosRankSum=0.865;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:6,69:0.92:75
chr11	56756664	rs2853083	G	A	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:22,236:0.91:258
chr11	56757021	rs61886711	G	A	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:25,255:0.91:280
chr11	56785801	rs139442186	C	T	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:30,158:0.84:188
chr11	56954846	rs716745	C	T	21223.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=990;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.68;ReadPosRankSum=-0.777;SOR=0.668;set=HC	GT:AD:AF:DP	1/1:82,897:0.92:979
chr11	57004577	rs11544374	C	T	276.53	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr11	57081197	rs4939134	G	C	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	57081475	rs4939135	C	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	57117385	rs2276042	C	T	4998.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	57118467	rs3741090	A	C	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:4,94:0.96:98
chr11	57135663	rs55655702	A	AG	1674.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	57137424	rs2276038	C	T	25280.77	.	AC=2;AF=1.00;AN=2;DB;DP=1002;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=25.46;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,993:1.00:993
chr11	57137538	rs67821929	A	AG	3469.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	57144152	rs1867126	G	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	57147016	rs540687	A	G	7622.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	57147353	rs544079	G	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	57148053	rs571651	G	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	57148175	rs669661	A	G	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	57155001	rs536455	G	A	8694.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	57155288	rs630396	T	C	10851.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr11	57156438	rs3741089	A	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	57176628	rs2241899	C	T	7819.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr11	57184218	rs4938865	C	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=1.958;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	57184224	rs60961847	G	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.11;SOR=2.007;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	57193653	rs12422015	A	G	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	57313469	rs12223229	C	G	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	57313659	rs2649658	G	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	57320044	rs2234412	T	C	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	57334420	rs66697438	GC	G	127.80	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=21.30;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	57369730	rs11229063	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	57374332	rs11603020	T	C	7422.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	57379170	rs2511988	A	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	57381989	rs4926	G	A	7967.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	57414387	rs7947357	A	G	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	57424389	rs55969690	GA	G	529.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=1.524;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr11	57461225	rs141993890	GTC	G	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-0.362;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr11	57461473	rs11287593	GT	G	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.407;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.711;QD=7.07;ReadPosRankSum=-0.131;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr11	57463500	rs1783978	T	C	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	57467035	rs11604333	C	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	57505520	.	CT	C	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=3.300;QD=1.22;ReadPosRankSum=-0.366;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:191,62:0.25:253
chr11	57507983	rs4827	C	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	57509429	rs635663	A	G	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	57571232	rs11229137	C	T	6930.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	57581613	rs623541	C	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	57799183	rs7123727	C	T	18636.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr11	57799371	rs1374570	G	C	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	57876436	rs7935428	C	A	6949.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	57995330	rs17555381	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	57996084	rs61902844	G	A	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	57996312	rs4245219	C	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	58034668	rs141451642	C	T	10671.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	58125620	rs4127353	T	C	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	58126305	rs4939208	A	T	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	58190136	rs4298923	A	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	58207204	rs4938895	A	G	6242.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr11	58378382	rs2245938	G	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	58380192	.	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.468;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr11	58381686	rs1938596	A	G	6936.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	58386049	rs11426880	A	AT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=1.039;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr11	58391501	rs1800169	G	A	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	58478026	rs675423	G	A	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	58478039	rs675757	T	C	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	58478084	rs675815	T	C	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	58492073	rs58778620	GTT	G	484.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.08;ReadPosRankSum=-0.869;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:4,19:0.83:23
chr11	58492105	rs117851698	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	58605922	rs10896850	A	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	58674952	rs35731745	G	GT	1815.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:3,70:0.96:73
chr11	58715513	rs11229707	T	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	59056153	rs1894123	C	T	6995.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.08;QD=25.53;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	59132798	rs7941190	G	C	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	59132882	rs10896964	A	G	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	59189405	rs9988824	T	C	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	59210550	rs7947825	G	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	59211188	rs6591536	G	A	14034.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr11	59211265	rs7941591	T	C	8791.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	59224720	rs1453543	A	G	12405.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:1,474:1.00:475
chr11	59368218	.	C	CA	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.519;QD=1.61;ReadPosRankSum=0.828;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:166,52:0.24:218
chr11	59369401	rs7106463	A	G	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	59480951	rs499033	T	C	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	59623378	rs34324219	C	A	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	59626477	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=-0.677;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:137,24:0.15:161
chr11	59829804	rs506053	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	59830103	rs481950	A	G	7113.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	59830198	rs533855	T	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	59831716	rs1151065	C	A	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	59834318	rs579721	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	59837097	rs528823	C	T	8293.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.884;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=3.065;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.112;QD=25.76;ReadPosRankSum=1.474;SOR=0.273;set=HC	GT:AD:AF:DP	1/1:1,321:1.00:322
chr11	59837721	rs144234019	T	TTATGAAAA	5778.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=60.83;SOR=2.044;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	59858036	rs2847663	C	G	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	59860178	rs502581	G	T	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	59940396	rs595718	A	G	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	59940400	rs2044979	C	T	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.05;SOR=1.760;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	59940403	rs2044978	A	G	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.28;SOR=1.925;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	59940407	rs592346	A	G	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.31;SOR=1.753;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	59940599	rs7232	T	A	11858.73	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr11	59942815	rs7935829	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	59943109	rs2278867	A	T	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	59945745	rs12453	T	C	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	59946302	rs598862	C	T	17212.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr11	59946310	rs5792172	CA	C	6060.73	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:20,341:0.94:361
chr11	59946466	rs587634	T	A	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	59982144	rs183375097	G	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	59997335	rs608659	T	C	7788.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	60050125	rs10792260	A	G	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	60064953	rs79818091	C	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	60073597	rs4644658	C	T	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=26.11;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	60073702	rs3018806	A	T	8300.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.78;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	60102790	rs1443250	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	60152563	rs950803	T	A	7633.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	60157107	rs2233252	T	G	11218.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr11	60157166	rs2233253	C	T	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	60163958	rs6591579	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	60164204	rs2241920	G	A	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	60164302	rs2241921	C	T	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	60165352	rs3217518	ATT	A	31455.73	.	AC=2;AF=1.00;AN=2;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.68;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,704:1.00:704
chr11	60172087	rs10750937	C	T	16648.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr11	60172273	rs10897057	A	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	60173360	rs4938941	A	G	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	60173554	rs4939353	A	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	60182970	rs7131283	A	T	5150.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	60184191	rs3825020	G	A	14503.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:2,559:1.00:561
chr11	60201232	rs3763845	T	C	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	60202747	rs894590	C	A	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	60202892	rs4938945	G	T	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	60215066	rs12787520	C	A	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	60264755	rs2298551	G	A	8497.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	60264947	rs2298552	C	T	9021.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	60265002	rs2298553	C	T	7115.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	60265164	rs2298554	G	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	60268679	rs2186918	G	C	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	60268736	rs2298555	C	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	60271325	rs2298556	A	T	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	60274393	rs2298558	G	A	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	60274640	rs2298559	T	C	7928.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	60285575	rs10736706	A	G	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	60291413	rs6591595	C	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	60297007	.	G	C	223	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.9991;HP=2;HapScore=2;MGOF=0;MMLQ=15;MQ=60.0;NF=0;NR=21;PP=223;QD=12.2748196451;SC=AGAAGATGAAGTGCACTGATA;SbPval=1.0;Source=Platypus;TC=38;TCF=9;TCR=29;TR=21;WE=60297015;WS=60296997;set=Platypus	GT:AD:AF:DP	1/0:17,21:0.55:38
chr11	60309947	rs4939400	A	T	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	60310083	rs11230378	A	T	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	60504424	rs11363998	CT	C	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.496;QD=2.10;ReadPosRankSum=0.897;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:114,68:0.37:182
chr11	60531346	rs1032939	T	G	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	60534901	rs4939450	G	C	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	60543367	rs17628721	C	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	60558375	rs11602321	A	G	8065.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	60559805	rs931861	A	G	13007.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.87;ReadPosRankSum=0.092;SOR=0.378;set=HC	GT:AD:AF:DP	1/1:3,520:0.99:523
chr11	60561613	rs751026	C	T	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	60562975	rs4939457	G	A	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	60567230	rs11230483	C	T	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	60567275	rs579967	G	A	11824.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr11	60610065	rs2074420	G	A	27552.77	.	AC=2;AF=1.00;AN=2;DB;DP=1068;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,1048:1.00:1048
chr11	60617646	rs495949	T	C	34749.77	.	AC=2;AF=1.00;AN=2;DB;DP=1363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,1352:1.00:1352
chr11	60620585	rs2467642	A	G	14569.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	60620590	rs2428461	C	G	14619.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	60635091	rs550479	T	C	7847.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr11	60638461	rs10897122	C	T	40284.77	.	AC=2;AF=1.00;AN=2;DB;DP=912;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,892:1.00:892
chr11	60638470	rs566411	A	G	43086.77	.	AC=2;AF=1.00;AN=2;DB;DP=1039;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.49;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,1014:1.00:1014
chr11	60658566	.	ACC	A,AC	221	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=17;HapScore=3;MGOF=90;MMLQ=25;MQ=59.34;NF=4,4;NR=4,4;PP=40,221;QD=6.125;SC=GATTCCCCCCACCCCCCCCCC;SbPval=0.55;Source=Platypus;TC=13;TCF=7;TCR=6;TR=8,8;WE=60658575;WS=60658556;set=Platypus	GT:AF:DP	0/1:0.62:13
chr11	60689445	rs555835	T	C	9947.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr11	60695301	rs575123	C	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	60703076	rs11230522	C	T	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	60703777	rs55920775	G	A	10421.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	60705454	rs2905692	A	G	10015.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	60750048	rs2905506	T	C	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	60750240	rs3019541	G	A	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	60750298	rs72195127	GTCTGCAGGGAC	G	1745.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	60776186	rs11230562	C	T	11344.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	60776306	rs2074225	C	T	14438.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr11	60776334	rs2905518	A	G	14570.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:1,569:1.00:570
chr11	60776465	rs11230564	A	G	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	60778513	rs74860834	T	C	9968.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr11	60778650	rs10528068	C	CGT,CGTGT	4845.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=340;set=Intersection	GT:AF:DP	1/2:0.29,0.62:234
chr11	60783126	rs3019556	C	T	66463.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=1518;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.090;QD=44.19;ReadPosRankSum=1.582;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:2,1502:1.00:1504
chr11	60783135	rs3019557	A	G	69908.77	.	AC=2;AF=1.00;AN=2;DB;DP=1630;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=43.34;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,1613:1.00:1613
chr11	60784934	rs2074231	A	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr11	60785038	rs2074232	A	G	7937.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	60785352	rs1050922	A	G	11670.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr11	60785464	rs2074233	G	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	60893322	rs574843	G	C	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	60899815	rs2232142	A	T	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	61044021	.	TA	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.226;QD=0.62;ReadPosRankSum=1.645;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:92,27:0.23:119
chr11	61096676	.	G	GA	998.73	.	AC=2;AF=1.00;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	61100308	rs2512810	G	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	61106525	rs2512809	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	61106892	rs2513329	G	C	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	61108974	rs2260655	G	A	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	61110169	rs4939514	A	C	21711.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=860;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=0.206;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:2,822:1.00:824
chr11	61111831	rs145461522	CTT	C	873.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=7.732;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.287;QD=10.28;ReadPosRankSum=1.205;SOR=1.995;set=HC	GT:AD:AF:DP	0/1:37,48:0.56:85
chr11	61112802	rs2305465	C	T	12337.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr11	61123965	rs76030461	A	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	61165280	rs3741265	G	A	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	61165731	rs11382548	C	CA	11683.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	61165741	rs10897158	G	C	11728.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	61179285	rs3019198	G	A	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	61183554	rs80264062	C	G	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	61197460	rs34378918	GC	G	2117.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr11	61204361	rs896831	A	C	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	61205434	rs879647	G	A	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	61205676	rs5792226	C	CT	1072.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=16.01;ReadPosRankSum=1.543;SOR=0.227;set=HC	GT:AD:AF:DP	1/1:7,60:0.90:67
chr11	61249383	rs3019200	C	A	10366.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr11	61253200	rs3019187	G	A	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	61253973	rs2957858	A	G	7590.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	61254376	rs3019188	G	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	61487690	rs198430	G	A	9621.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,372:1.00:373
chr11	61491097	rs566009	A	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	61496657	rs198417	C	T	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	61505168	rs198444	G	A	21010.77	.	AC=2;AF=1.00;AN=2;DB;DP=822;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,812:1.00:812
chr11	61505696	rs198443	G	T	33720.77	.	AC=2;AF=1.00;AN=2;DB;DP=1313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,1304:1.00:1304
chr11	61508003	.	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.802;ClippingRankSum=0.000;DP=478;ExcessHet=3.0103;FS=290.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=1.463;SOR=9.840;set=HC	GT:AD:AF:DP	0/1:336,136:0.29:472
chr11	61508522	rs198440	A	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	61534872	rs547589	A	C	16622.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:2,641:1.00:643
chr11	61536583	rs579383	G	A	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr11	61548559	rs509360	A	G	10523.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr11	61548874	rs174532	G	A	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	61560096	.	T	C	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.288;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:146,100:0.41:246
chr11	61624885	rs526126	G	C	6564.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	61641211	rs6591665	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	61647427	rs174635	T	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	61658629	rs693672	T	C	7378.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	61658800	rs174465	C	T	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	61670037	rs174471	C	T	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	61674118	rs174476	C	T	7196.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=25.52;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	61724514	rs195162	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	61725599	rs113492158	A	ATCCTCC,ATCCTCCTCC	9734.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=222;set=Intersection	GT:AF:DP	1/2:0.08,0.92:209
chr11	61726871	rs195158	G	T	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	61730036	rs149698	G	A	11793.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr11	61731534	rs195155	G	T	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	61735553	rs11271453	T	TGCTGCAGATTGGGAA	4874.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	61895541	rs1675130	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	61895741	rs1675131	A	G	9581.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:1,371:1.00:372
chr11	61896215	rs1792946	G	A	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	61897197	rs1792944	C	T	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	61897359	rs1675133	C	T	23858.77	.	AC=2;AF=1.00;AN=2;DB;DP=928;set=Intersection	GT:AD:AF:DP	1/1:0,911:1.00:911
chr11	61906299	rs1614060	A	G	17808.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,680:1.00:680
chr11	61906374	rs1675126	T	C	20952.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638;ClippingRankSum=0.000;DB;DP=824;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.49;ReadPosRankSum=-1.358;SOR=0.253;set=HC	GT:AD:AF:DP	1/1:1,821:1.00:822
chr11	61907909	rs1675124	A	G	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	61908440	rs2277283	T	C	27546.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=1097;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=-0.305;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:2,1078:1.00:1080
chr11	61908672	rs1675123	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	61913196	rs7129085	G	T	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	61914056	rs11230931	G	A	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	61915823	rs3890102	A	G	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	61959725	rs3831484	GTC	G	3761.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	61977858	.	CTTTT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=9.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.077;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr11	62037583	rs11603383	G	A	6929.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	62105391	rs2513749	C	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	62123717	rs2463837	G	A	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	62124696	rs143687152	C	CTTTTG	455.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	62158924	rs2958532	C	T	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	62186542	rs3741240	G	A	27842.77	.	AC=2;AF=1.00;AN=2;DB;DP=1063;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,1056:1.00:1056
chr11	62201131	rs2259606	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	62286666	rs114515655	C	T	10276.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr11	62292882	rs566144	G	T	19139.77	.	AC=2;AF=1.00;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	1/1:0,726:1.00:726
chr11	62293948	rs486903	G	A	16515.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr11	62344743	rs117162358	C	T	15916.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr11	62365665	rs2849031	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	62371773	rs2516633	A	C	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	62377095	.	A	G	5594.77	.	AC=1;AF=0.500;AN=2;DP=511;set=Intersection	GT:AD:AF:DP	0/1:227,271:0.54:498
chr11	62380732	rs4387351	T	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	62381106	rs1799959	G	C	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	62383714	.	T	TC	133.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.038;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=2.479;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.597;QD=0.68;ReadPosRankSum=2.593;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:159,37:0.19:196
chr11	62383715	rs12794886	G	C	1848.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-3.539;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:34,149:0.81:183
chr11	62384869	rs4963224	T	C	13402.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,523:1.00:523
chr11	62397177	rs948683	C	G	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	62401716	rs2957121	A	G	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	62430659	rs597259	T	A	5067.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	62433781	.	CA	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.20;ReadPosRankSum=2.598;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:242,53:0.18:295
chr11	62437647	rs489778	G	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	62438819	rs693698	G	T	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,109:0.98:111
chr11	62439569	rs13941	G	A	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	62458275	rs6856	T	C	14475.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr11	62462217	rs181164682	T	A	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	62469929	rs72929434	C	A	8083.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr11	62487378	rs12291015	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	62488917	rs11431777	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.055;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr11	62490219	rs576251	G	A	17753.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,686:1.00:686
chr11	62496519	rs584845	T	C	12949.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr11	62500444	rs143308039	CT	C	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=1.210;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr11	62505764	rs6675	C	T	7060.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	62521408	rs72929469	A	T	9970.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr11	62521475	rs72929471	T	C	31342.77	.	AC=2;AF=1.00;AN=2;DB;DP=1209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=26.23;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,1195:1.00:1195
chr11	62521663	rs3829248	C	T	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	62543398	rs144825291	C	T	10645.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr11	62546491	.	G	GT	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.847;QD=1.31;ReadPosRankSum=-0.755;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:89,34:0.28:123
chr11	62559351	rs118167825	T	C	14940.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,590:1.00:590
chr11	62563353	rs539465	G	A	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.354;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	62564538	.	C	CA	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.270;QD=3.01;ReadPosRankSum=0.789;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr11	62638197	.	A	AT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-2.676;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr11	62638330	rs11231260	T	A	714.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.733;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;MQRankSum=0.000;QD=22.34;ReadPosRankSum=-0.217;SOR=0.321;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr11	62644535	rs71691999	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.626;QD=1.30;ReadPosRankSum=-2.554;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr11	62677220	rs2067480	G	A	7058.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	62677790	rs141441306	G	A	9805.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	62678306	rs2067477	G	T	14174.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr11	62744899	rs3017670	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	62747145	rs3017671	A	G	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	62748289	rs4149174	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	62749590	rs11568621	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	62751812	rs11568629	T	C	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	62751911	rs11568628	C	A	13119.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr11	62752182	rs4149171	T	C	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	62847453	rs7945121	T	C	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	62847562	rs7926818	G	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	62848367	rs10897341	A	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	62848445	rs11231340	A	G	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	62848487	rs11231341	A	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	62848568	rs11231342	C	G	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	62848995	rs6591733	G	C	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	62850684	rs4963356	C	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	62863518	rs7113279	A	G	13124.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,505:1.00:505
chr11	62871460	rs12283166	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	62886319	rs948060	G	C	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	62886800	rs4963245	G	C	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	62902172	rs1939782	A	C	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	62910849	rs1939749	T	C	7896.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	62911079	rs1939748	G	C	9401.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	62951064	rs1525072	C	A	7700.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.227;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=-0.861;SOR=0.500;set=HC	GT:AD:AF:DP	1/1:1,293:1.00:294
chr11	62995875	rs7106186	G	A	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	63057925	rs1790218	G	A	17405.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:0,684:1.00:684
chr11	63064823	rs576641	T	C	12911.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	63064970	rs575009	T	G	6822.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	63066903	rs515213	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	63067138	rs513338	T	G	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	63067181	.	A	AGTGTGTGTGT,AGTGTGTGTGTGT	1140.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=59;set=Intersection	GT:AF:DP	1/2:0.54,0.46:26
chr11	63069715	rs557658	A	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr11	63072310	rs1201559	C	T	9965.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,394:1.00:394
chr11	63129782	rs517655	A	G	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	63129876	rs516763	T	G	9034.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	63138482	rs566456	G	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	63258416	rs10897424	T	C	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	63313644	rs584905	T	C	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr11	63357919	rs593759	C	T	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	63381458	rs61929725	C	T	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	63398495	rs148102000	TCAG	T	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	63400493	rs17656941	C	T	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	63410985	rs12274980	G	C	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	63411839	.	A	AGATAC	31	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=0.9999;HP=2;HapScore=4;MGOF=9;MMLQ=23;MQ=60.0;NF=0;NR=2;PP=31;QD=59.5513761702;SC=AAGGGGGTAAAGTAGAAGGAT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=63411850;WS=63411829;set=Platypus	GT:AD:AF:DP	1/1:3,2:0.40:5
chr11	63411840	rs148441781	G	GA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	63411842	.	A	ACGTACT,ACT	321.75	.	AC=2,0;AF=1.00,0.00;AN=2;DP=8;set=Intersection	GT:AF:DP	1/1:1.00:6
chr11	63419880	rs61928195	C	T	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	63438836	rs2959880	C	T	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	63438972	rs74383103	G	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	63449125	rs11551944	C	A	9539.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	63531175	rs2959886	C	G	9739.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	63533334	.	TTCC	T	863.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DP=378;ExcessHet=3.0103;FS=2.856;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=5.258;QD=2.50;ReadPosRankSum=-1.617;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:301,44:0.13:345
chr11	63533905	rs11272963	A	ACAGCAATAAAAGGGATGG	2022.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	63657494	rs4980528	G	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	63663130	.	CTTTTTTTTTTTT	C	2082.73	.	AC=2;AF=1.00;AN=2;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;QD=33.59;SOR=4.743;set=HC	GT:AD:AF:DP	1/1:2,60:0.97:62
chr11	63666705	.	T	TTTTC	239.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.32;MQRankSum=0.674;QD=9.99;ReadPosRankSum=-0.168;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr11	63668557	rs224174	C	T	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	63670387	rs1486936	C	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	63673603	.	CTG	C	1785.73	.	AC=2;AF=1.00;AN=2;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.79;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	63676313	rs56263226	G	GC	1887.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.76;ReadPosRankSum=1.219;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,67:0.99:68
chr11	63679369	rs320108	T	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	63680297	rs320110	A	G	20781.77	.	AC=2;AF=1.00;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	1/1:0,822:1.00:822
chr11	63681513	rs10897461	T	C	8584.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	63681648	rs4980533	G	A	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	63682312	rs4375445	G	C	49594.77	.	AC=2;AF=1.00;AN=2;DB;DP=1107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=45.17;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,1098:1.00:1098
chr11	63682315	rs34212439	C	G	49896.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=1107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.045;QD=45.44;ReadPosRankSum=2.428;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:2,1096:1.00:1098
chr11	63682318	rs11231638	G	C	49298.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=1110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.045;QD=44.86;ReadPosRankSum=2.278;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:2,1097:1.00:1099
chr11	63682869	rs3802941	A	G	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	63706443	.	AA	GG	102	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=14;HapScore=2;MGOF=220;MMLQ=28;MQ=60.13;NF=3;NR=0;PP=102;QD=51.8226249541;SC=GGGGGGGGGGAAGCTGCGAGG;SbPval=1.0;Source=Platypus;TC=12;TCF=10;TCR=2;TR=3;WE=63706452;WS=63706432;set=Platypus	GT:AD:AF:DP	1/1:9,3:0.25:12
chr11	63706474	rs873928	G	C	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	63706504	rs3903058	A	G	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	63714596	rs116356906	G	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	63719762	rs150657969	G	A	11673.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr11	63720086	rs4980513	T	G	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	63755961	rs744864	A	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	63764302	rs7939571	G	C	13128.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr11	63765135	rs35611728	A	AC	3622.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-0.841;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:38,185:0.83:223
chr11	63767096	rs74751881	C	T	11658.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=27.24;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr11	63767186	rs709594	A	G	8923.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	63768798	rs79355361	G	A	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	63769144	rs539432	C	G	9484.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	63883985	rs614397	T	C	30903.77	.	AC=2;AF=1.00;AN=2;DB;DP=1230;set=Intersection	GT:AD:AF:DP	1/1:3,1214:1.00:1217
chr11	63884027	rs614035	C	T	24845.77	.	AC=2;AF=1.00;AN=2;DB;DP=947;set=Intersection	GT:AD:AF:DP	1/1:0,938:1.00:938
chr11	63885632	rs4379854	A	G	23199.77	.	AC=2;AF=1.00;AN=2;DB;DP=892;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,886:1.00:886
chr11	63885704	rs677447	C	T	23211.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=5.179;ClippingRankSum=0.000;DB;DP=900;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.039;QD=25.88;ReadPosRankSum=-0.002;SOR=0.078;set=HC	GT:AD:AF:DP	1/1:3,894:1.00:897
chr11	63994692	rs1860368	T	C	29298.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,660:1.00:660
chr11	63994696	rs2429456	T	C	29577.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,662:1.00:662
chr11	63995302	rs2429455	C	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	63997329	rs633561	A	G	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.486;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	63997338	rs633557	T	C	7429.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	63997566	rs10708923	GA	G	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=-0.678;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:20,51:0.72:71
chr11	63997882	rs11311686	AT	A	2002.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.400;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.349;QD=10.60;ReadPosRankSum=0.931;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:40,149:0.79:189
chr11	63999529	rs3741403	C	T	4825.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	64002238	rs7482791	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	64004524	rs61761272	C	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=39.31;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	64004553	.	CTCAAA	C	462.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.91;QD=46.27;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	64004692	rs12366035	C	T	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	64011441	rs654573	T	C	11775.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr11	64012225	rs605187	G	C	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	64012949	rs57467371	TG	T	318.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	64022459	rs632439	A	G	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	64024056	rs588177	C	A	14091.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr11	64026144	rs2244625	G	A	35684.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.763;ClippingRankSum=0.000;DB;DP=1379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.24;ReadPosRankSum=-0.897;SOR=0.230;set=HC	GT:AD:AF:DP	1/1:1,1359:1.00:1360
chr11	64030944	rs2510067	T	C	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	64035100	.	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.279;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr11	64052306	rs652611	T	G	21460.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,808:1.00:808
chr11	64066859	rs2232417	G	A	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	64082437	rs650008	C	T	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	64085074	rs550819	T	A	18608.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,709:1.00:709
chr11	64085785	rs7938623	A	G	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	64085938	rs7941847	T	C	15933.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,638:1.00:638
chr11	64088435	rs566049	A	G	6078.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr11	64107735	rs663743	G	A	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr11	64109118	rs647152	T	G	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	64109315	.	GGTTGTGGTCTGAGGTCTTGGGCCATCAGTGATGTCACAACCAGATGGCCCAAGACCCCAGACCACAACCCCATGTCTGGT	G	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.397;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=10.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.279;SOR=1.728;set=HC	GT:AD:AF:DP	0/1:178,24:0.12:202
chr11	64110348	rs11602301	T	G	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.70;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	64110422	rs11601860	A	T	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	64110668	rs574835	G	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	64110683	rs479552	G	C	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	64111928	rs685870	T	C	6976.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	64116843	rs1318165	A	C	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	64118422	rs614047	G	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	64120435	rs489419	T	C	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	64120451	rs61886887	C	T	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	64124515	rs612448	T	C	17344.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr11	64124622	rs61886888	G	A	15398.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,588:1.00:588
chr11	64124823	rs519763	C	T	6471.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	64124940	rs600377	T	G	7155.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	64124980	rs542907	G	A	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	64127744	rs521950	A	G	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	64127881	rs564687	T	G	14836.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,583:1.00:583
chr11	64128423	rs516124	G	T	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	64135435	rs508168	G	A	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	64135541	rs3217512	GTC	G	39696.73	.	AC=2;AF=1.00;AN=2;DB;DP=919;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,896:1.00:896
chr11	64136877	rs11606015	C	G	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	64137875	rs11606081	T	C	5209.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	64138805	rs11542299	T	C	15251.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr11	64138905	rs17857342	T	G	6626.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	64326795	rs2277312	A	G	10337.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:1,395:1.00:396
chr11	64332862	rs71456318	A	C	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	64359286	rs3825016	C	T	13613.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr11	64360274	rs11231825	T	C	25616.77	.	AC=2;AF=1.00;AN=2;DB;DP=1011;set=Intersection	GT:AD:AF:DP	1/1:0,1005:1.00:1005
chr11	64361384	rs2021860	G	T	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	64365943	rs1529909	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	64367050	rs1705361	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.60;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	64367325	rs1630320	A	G	7208.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	64387932	rs2277311	G	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	64387983	.	C	T	1773.77	.	AC=2;AF=1.00;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	64418900	rs526338	G	A	14762.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr11	64421249	.	G	GT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.640;QD=1.40;ReadPosRankSum=-0.951;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr11	64480308	rs2666560	C	T	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	64480641	rs2518907	G	A	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	64494978	rs145001220	ATT	A	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-2.644;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr11	64496587	rs559977	T	C	7661.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	64497161	rs534221	C	T	8770.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.33;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr11	64497189	rs533515	A	C	8717.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=6.225;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=38.089;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.242;QD=19.90;ReadPosRankSum=2.537;SOR=0.548;set=HC	GT:AD:AF:DP	1/1:26,412:0.94:438
chr11	64503179	rs553618	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	64503496	rs556356	A	G	6579.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	64503543	rs33956572	CT	C	2806.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	64507315	rs550930	T	C	9667.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr11	64507680	rs547280	A	C	32117.77	.	AC=2;AF=1.00;AN=2;DB;DP=1251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,1236:1.00:1236
chr11	64507799	rs546323	G	C	9482.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:2,370:0.99:372
chr11	64510898	rs2904961	C	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	64511050	rs2073797	G	C	7244.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	64520942	rs2959652	G	T	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	64522066	rs625172	A	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	64525216	rs589691	C	T	17118.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr11	64525464	rs490980	C	T	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	64525644	rs489192	G	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	64535357	rs575375	T	C	12503.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr11	64535849	rs561158	C	T	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	64536866	rs484886	T	C	9260.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	64563934	rs483544	A	G	19119.77	.	AC=2;AF=1.00;AN=2;DB;DP=746;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,728:1.00:728
chr11	64565175	rs35199527	C	CT	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-0.507;QD=9.06;ReadPosRankSum=0.419;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,35:0.71:49
chr11	64572018	rs2959656	T	C	12369.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr11	64572403	rs654440	C	G	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	64572557	rs540012	A	G	11232.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:2,443:1.00:445
chr11	64591972	rs10792447	T	C	10723.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr11	64594490	rs646709	A	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	64596916	rs10897529	C	T	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	64597506	rs3741395	T	C	18089.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr11	64598944	rs684071	A	G	14225.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr11	64602782	rs11605623	C	T	27794.77	.	AC=2;AF=1.00;AN=2;DB;DP=1077;set=Intersection	GT:AD:AF:DP	1/1:0,1066:1.00:1066
chr11	64603844	rs138577794	A	ACTCACCCAC	31203.73	.	AC=2;AF=1.00;AN=2;DB;DP=880;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.08;QD=46.37;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,673:1.00:673
chr11	64604178	rs2904960	T	C	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=24.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	64605689	rs541525	A	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	64606765	rs676977	T	C	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	64606910	rs142726755	C	CCTGCTCCCA	5883.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.16;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	64621856	rs3897618	A	G	15989.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr11	64622869	rs10897533	G	C	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	64645871	rs1211284	A	G	17737.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,701:1.00:701
chr11	64668654	.	A	AT	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-1.695;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:50,23:0.32:73
chr11	64669417	rs682673	T	C	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	64674676	rs34944753	G	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	64677293	rs656195	G	C	6067.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr11	64678013	rs72929102	G	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	64678920	rs638583	T	C	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	64680407	rs594820	G	C	881.81	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr11	64693086	.	G	GC,GCC	4304.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.07;ReadPosRankSum=1.214;SOR=0.732;set=HC	GT:AD:AF:DP	1/2:7,54,98:0.34,0.62:159
chr11	64695185	.	GA	G	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.862;QD=2.27;ReadPosRankSum=1.502;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:91,48:0.35:139
chr11	64703083	.	TTGTG	T	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-1.191;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr11	64715330	rs35160886	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.952;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr11	64789194	rs664226	T	C	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	64794918	rs3832791	T	TG	3722.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	64799789	rs532373	C	T	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	64799894	rs678614	A	C	13801.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr11	64799998	rs534236	T	C	20053.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,797:1.00:797
chr11	64802267	rs6591869	G	A	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	64807294	rs653111	G	A	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	64808647	rs10160811	A	C	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	64808681	rs34998502	AC	A	5177.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	64809090	rs12271134	T	G	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	64809133	rs10792455	T	G	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	64809167	rs10792456	A	G	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	64809441	rs3862374	C	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	64810771	rs11231929	A	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	64820654	rs477539	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	64833935	rs548150	G	A	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	64834432	rs573957	T	A	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	64835463	rs149675910	ACT	A	783.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=1.629;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:279,63:0.18:342
chr11	64847363	rs372909961	CT	C	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.953;QD=7.12;ReadPosRankSum=0.543;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr11	64851305	rs947799	C	T	15883.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.12;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,608:1.00:608
chr11	64851453	rs35819335	CT	C	33963.73	.	AC=2;AF=1.00;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	1/1:1,907:1.00:908
chr11	64855986	rs2282498	A	G	17751.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr11	64856108	rs2282499	A	C	25934.77	.	AC=2;AF=1.00;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	1/1:2,989:1.00:991
chr11	64856500	rs525781	A	G	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	64863969	rs61505294	TG	T	2380.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.76;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	64876740	rs72932837	C	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	64878661	rs625004	T	C	28090.77	.	AC=2;AF=1.00;AN=2;DB;DP=1105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,1090:1.00:1090
chr11	64880090	rs4930284	G	C	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	64882789	rs1129195	C	T	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	64884052	rs1546532	G	A	12096.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr11	64896237	rs3802936	G	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	64898226	rs9971407	C	T	7804.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=26.02;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	64898357	rs11369296	G	GC	13735.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	64955369	.	G	GA	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-1.744;QD=1.34;ReadPosRankSum=0.253;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:84,24:0.22:108
chr11	64972464	rs17881454	C	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	64977644	rs625750	C	T	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	64977937	rs542380	A	G	15404.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr11	64981522	rs11605576	C	A	31054.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.769;ClippingRankSum=0.000;DB;DP=1200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.23;ReadPosRankSum=1.385;SOR=0.258;set=HC	GT:AD:AF:DP	1/1:1,1183:1.00:1184
chr11	64981587	rs11605632	G	A	22870.77	.	AC=2;AF=1.00;AN=2;DB;DP=886;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,878:1.00:878
chr11	64981837	rs12420456	C	T	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	64990041	rs514076	G	C	7545.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	64993195	rs10633296	C	CAGTA	4552.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	65000478	rs2904978	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	65000719	rs2904979	C	T	14378.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:2,563:1.00:565
chr11	65003812	rs625427	T	C	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	65004301	rs2904982	G	T	23847.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.072;ClippingRankSum=0.000;DB;DP=916;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=-1.211;SOR=0.260;set=HC	GT:AD:AF:DP	1/1:1,911:1.00:912
chr11	65004386	rs56657874	C	T	9528.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	65118971	rs620888	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	65143701	rs80042162	CT	C	4287.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	65144075	rs624307	T	C	28015.77	.	AC=2;AF=1.00;AN=2;DB;DP=1095;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,1082:1.00:1082
chr11	65147294	rs547221	G	A	11842.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.868;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.09;ReadPosRankSum=-1.086;SOR=0.410;set=HC	GT:AD:AF:DP	1/1:1,471:1.00:472
chr11	65147862	rs573864	C	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.79;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	65161129	rs2073800	C	T	20157.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	1/1:1,788:1.00:789
chr11	65178620	rs2957274	G	A	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	65268479	rs72004824	GT	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.990;QD=0.32;ReadPosRankSum=-3.077;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:109,24:0.18:133
chr11	65271779	rs36002528	CT	C	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=4.134;QD=0.86;ReadPosRankSum=1.173;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:177,53:0.23:230
chr11	65293819	rs75169347	G	A	12750.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	65320780	rs4244811	G	A	8282.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	65325325	.	CCAG	C	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DP=452;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.937;QD=1.54;ReadPosRankSum=2.007;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:274,32:0.10:306
chr11	65347297	rs5792362	C	CA	295.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.878;QD=8.45;ReadPosRankSum=1.044;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr11	65347636	rs1194100	G	C	8164.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	65349849	rs1194099	A	T	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	65352062	rs2298615	C	T	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	65352401	rs373476868	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	65357697	rs1151503	A	G	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	65359625	rs4261292	C	G	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	65363275	rs3814752	G	A	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	65366192	rs7946115	G	C	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	65366240	rs7932616	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	65366847	rs10791820	C	T	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	65367253	rs4326800	C	T	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	65373621	rs1151527	A	G	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	65383755	rs58950470	G	T	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	65383896	rs7947140	G	C	25670.77	.	AC=2;AF=1.00;AN=2;DB;DP=993;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,983:1.00:983
chr11	65385606	rs1151489	A	G	8090.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr11	65386206	rs1193851	C	G	18304.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,696:1.00:696
chr11	65389631	rs1144789	A	G	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	65392695	rs1205259	C	T	21806.77	.	AC=2;AF=1.00;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	1/1:0,828:1.00:828
chr11	65393566	rs11227242	C	T	14483.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,551:1.00:551
chr11	65394322	rs10896024	A	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	65415028	rs4930157	T	G	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	65423082	rs1144792	G	A	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	65480791	rs551115	A	G	6878.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	65481166	rs1151500	T	C	13305.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	65481465	rs487264	T	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	65484569	rs563427	A	G	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	65546857	rs610037	A	C	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr11	65547333	rs12146493	G	A	22583.77	.	AC=2;AF=1.00;AN=2;DB;DP=884;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,868:1.00:868
chr11	65554680	rs10896044	C	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	65601560	rs17854357	G	C	16919.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr11	65617113	rs11327250	AG	A	10134.73	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr11	65623739	rs11227332	A	G	18453.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-1.762;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:2,720:1.00:722
chr11	65625631	.	G	A	896.77	.	AC=2;AF=1.00;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	65630098	rs3216088	T	TG	6824.73	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:44,272:0.86:316
chr11	65636053	rs601314	T	C	6778.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	65637984	rs630394	C	G	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	65647796	.	C	CT	646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.548;QD=1.66;ReadPosRankSum=2.452;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:297,93:0.24:390
chr11	65649774	rs604630	A	G	13498.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	65653242	rs568617	C	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	65654917	rs35947009	G	GA	99.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.849;QD=4.99;ReadPosRankSum=0.368;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr11	65655393	rs641018	G	C	11856.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=-1.290;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:2,460:1.00:462
chr11	65661656	rs507062	T	C	10472.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.42;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr11	65664346	rs637571	T	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	65667796	rs1058068	G	A	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	65684929	rs9667389	C	T	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	65685225	rs7947504	T	C	14052.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr11	65713207	rs9795469	T	C	17533.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:2,687:1.00:689
chr11	65727301	rs491973	A	G	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	65732651	rs550435	G	A	7540.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	65732800	rs552130	T	C	10572.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr11	65733289	rs556643	G	A	12288.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr11	65734539	rs1151505	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	65735174	rs660118	G	C	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	65744275	rs543952	T	C	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	65744421	rs542332	C	T	6818.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	65746653	rs679581	A	G	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	65767153	rs507672	A	G	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	65767215	rs506873	G	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	65771050	rs147010511	TCACTGAG	T	2112.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	65780702	rs9667817	A	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr11	65788072	rs3814747	C	T	11316.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr11	65790527	rs2845570	G	T	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	65792566	rs683191	G	T	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	65810209	rs61895584	C	T	6061.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	65810749	rs7937692	T	C	11358.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr11	65811208	rs4930170	G	T	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	65824994	rs2302883	T	C	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	65825455	rs376356384	AAAG	A	616.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;MQRankSum=-0.467;QD=18.68;ReadPosRankSum=1.327;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr11	65829637	rs11227395	A	C	213.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	65868310	rs475817	T	A	21857.77	.	AC=2;AF=1.00;AN=2;DB;DP=851;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,844:1.00:844
chr11	65983522	rs548858	A	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	65985000	rs557082	A	C	9551.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr11	65997898	rs561948	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	66010633	rs524268	T	C	11030.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr11	66029130	rs572827	G	C	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	66031450	rs525698	T	C	10517.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr11	66036293	rs150627444	A	ACC,ACCC	16782.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.322;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=36.48;ReadPosRankSum=2.939;SOR=1.861;set=HC	GT:AD:AF:DP	1/2:5,186,269:0.40,0.58:460
chr11	66040053	rs555826	A	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	66043253	rs55931871	T	C	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	66050948	rs3016315	C	T	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	66054823	rs510398	C	T	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr11	66059642	rs150934757	G	A	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	66059782	rs6591210	T	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	66099987	rs1784029	C	T	25525.77	.	AC=2;AF=1.00;AN=2;DB;DP=995;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.40;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,967:1.00:967
chr11	66100152	rs1784030	T	C	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	66101974	rs3016317	C	T	9318.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	66103046	rs3016763	C	T	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	66104057	rs3016316	T	A	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	66105194	rs1052566	G	A	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	66105817	rs2276106	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	66107527	rs1785633	C	A	14337.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.974;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.20;ReadPosRankSum=1.166;SOR=0.458;set=HC	GT:AD:AF:DP	1/1:3,566:0.99:569
chr11	66107674	rs1784035	A	G	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr11	66108660	rs947978	C	T	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	66109527	rs112182142	C	CTGTG,CTGTGTG	5005.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=226;set=Intersection	GT:AF:DP	1/2:0.21,0.77:204
chr11	66109779	rs1784037	AT	GA	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	66130736	rs1039593	A	G	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	66131149	rs1039594	C	T	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	66131906	rs7125100	A	G	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	66133311	rs4930358	T	C	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	66133336	rs2279861	A	G	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.554;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	66135179	rs2279862	C	T	6300.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	66135898	rs2292123	T	C	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	66138894	rs7946434	G	C	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	66258916	rs75546553	G	A	6982.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	66262806	rs10791878	T	C	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	66278059	rs1791688	C	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	66285925	.	C	CT	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.678;QD=1.83;ReadPosRankSum=-0.937;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:108,39:0.27:147
chr11	66358126	rs486584	C	T	7696.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	66384143	rs76192789	C	A	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	66406070	rs670900	A	C	6594.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	66410791	.	A	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=80.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=6.299;SOR=7.137;set=HC	GT:AD:AF:DP	0/1:82,38:0.32:120
chr11	66436923	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.436;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr11	66438278	.	CA	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.903;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:91,34:0.27:125
chr11	66456387	rs2276138	T	C	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	66458696	rs12804382	C	T	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	66469032	rs532439	T	C	10579.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr11	66472274	rs4930388	T	C	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	66481264	rs615536	C	T	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	66483265	rs12805133	A	G	11097.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr11	66512290	.	G	GGGC	10172.70	.	AC=2;AF=1.00;AN=2;DP=323;set=Intersection	GT:AD:AF:DP	1/1:18,253:0.93:271
chr11	66812338	rs11227668	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	66833265	rs12803688	G	A	8328.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	66833471	rs59589410	G	C	11988.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.523;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.03;ReadPosRankSum=1.206;SOR=0.361;set=HC	GT:AD:AF:DP	1/1:1,478:1.00:479
chr11	66837965	rs4930409	T	C	11439.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr11	66995603	rs3741189	T	C	12018.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr11	67017445	rs34463980	C	CA	3716.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	67021929	rs3892144	GC	AA	17477.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	67034122	.	AGCG	A	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=5.714;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-3.668;QD=1.60;ReadPosRankSum=0.520;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:27,4:0.13:31
chr11	67050123	rs3730145	T	G	20010.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,763:1.00:763
chr11	67052466	rs10896164	G	A	10708.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	67066878	rs3802745	T	G	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	67068356	rs60229295	C	T	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	67068859	rs2298815	T	C	18224.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:0,700:1.00:700
chr11	67071584	rs4244822	C	G	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	67075131	rs57238619	C	T	9514.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	67076810	rs3737460	T	G	7311.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	67160285	rs2066491	C	T	11678.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr11	67160961	rs2066496	A	G	7881.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:2,312:0.99:314
chr11	67164791	rs872110	T	C	12690.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:1,479:1.00:480
chr11	67166984	rs2286620	T	C	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	67171736	rs2514256	C	T	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	67176368	rs11227786	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	67176736	rs11227787	C	G	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	67176898	rs11227788	A	G	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	67177278	rs7122299	G	A	13760.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,532:1.00:532
chr11	67183492	rs34596169	T	C	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	67186000	rs1790733	A	G	8614.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	67191449	rs1790747	T	C	14216.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr11	67192107	rs1790748	T	A	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	67192332	.	C	CCACACACACACA	659.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	67192555	rs1626067	G	A	8808.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	67196237	rs1476792	T	C	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	67196544	rs917570	C	G	9338.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,357:1.00:358
chr11	67199706	rs1638588	C	A	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr11	67200812	rs55987642	C	T	25846.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr11	67200819	rs4930427	C	T	26506.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,608:1.00:608
chr11	67201008	rs1790753	C	T	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	67202044	rs1790752	G	A	11104.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:2,432:1.00:434
chr11	67202156	rs13859	C	T	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	67203442	rs60969594	C	T	24290.77	.	AC=2;AF=1.00;AN=2;DB;DP=934;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,919:1.00:919
chr11	67205978	rs872375	G	A	22839.77	.	AC=2;AF=1.00;AN=2;DB;DP=888;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,868:1.00:868
chr11	67207426	rs2302264	G	A	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	67223920	rs1638564	CA	GC	12784.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;JOINED;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:2,484:1.00:486
chr11	67257037	rs4084113	C	T	15162.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr11	67257273	rs611697	G	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	67257823	rs641081	C	A	22002.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	1/1:0,855:1.00:855
chr11	67258391	rs4930199	A	G	8499.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr11	67262282	rs202207490	C	CGA	9322.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	67262289	.	G	GCGAGAGGA	11407.73	.	AC=2;AF=1.00;AN=2;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	67263767	rs618633	A	G	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	67264679	rs2276120	C	T	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	67267043	rs79324721	T	A	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.34;MQRankSum=4.096;QD=9.44;ReadPosRankSum=-2.575;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr11	67267043	.	T	TCCAA	634	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=2;HapScore=1;MGOF=28;MMLQ=26;MQ=60.95;NF=17;NR=2;PP=634;QD=33.6842105263;SC=CATCCATCCATCCATCCATCC;SbPval=0.92;Source=Platypus;TC=23;TCF=18;TCR=5;TR=19;WE=67267051;WS=67267033;set=Platypus	GT:AD:AF:DP	1/1:4,19:0.83:23
chr11	67267059	rs147135540	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=16.843;MLEAC=1;MLEAF=0.500;MQ=62.48;MQRankSum=-1.401;QD=1.70;ReadPosRankSum=0.299;SOR=3.598;set=HC	GT:AD:AF:DP	0/1:36,5:0.12:41
chr11	67267061	rs201473637	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=13.202;MLEAC=1;MLEAF=0.500;MQ=62.43;MQRankSum=-1.377;QD=1.68;ReadPosRankSum=-0.136;SOR=3.600;set=HC	GT:AD:AF:DP	0/1:37,5:0.12:42
chr11	67267063	rs59749660	T	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.160;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=13.202;MLEAC=1;MLEAF=0.500;MQ=62.43;MQRankSum=-1.377;QD=1.47;ReadPosRankSum=-1.381;SOR=3.600;set=HC	GT:AD:AF:DP	0/1:37,5:0.12:42
chr11	67267066	.	A	ACCCGCCCAC	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=13.557;MLEAC=1;MLEAF=0.500;MQ=62.25;MQRankSum=-1.170;QD=1.18;ReadPosRankSum=-1.432;SOR=3.241;set=HC	GT:AD:AF:DP	0/1:40,4:0.09:44
chr11	67351531	rs1079719	G	A	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.06;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	67351540	rs1871041	A	G	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.68;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	67351774	rs2370143	C	T	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	67352256	rs762803	C	A	11359.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr11	67352689	rs1695	A	G	25314.77	.	AC=2;AF=1.00;AN=2;DB;DP=1010;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,995:1.00:995
chr11	67353844	rs1871042	C	T	24189.77	.	AC=2;AF=1.00;AN=2;DB;DP=924;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,914:1.00:914
chr11	67353970	rs4891	T	C	18606.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr11	67372143	rs61889938	G	A	6002.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	67372477	rs12421329	G	T	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	67372593	rs12793832	A	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	67374581	rs1871043	T	C	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	67375162	rs1382089	T	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	67375184	rs7948073	T	G	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	67397251	rs17851655	G	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	67399735	rs2514021	T	C	16654.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr11	67399914	rs11227869	G	T	7627.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	67400235	rs10896189	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	67400622	rs61894500	G	A	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	67402744	rs59223436	G	A	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	67406829	rs1993839	T	C	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	67407146	rs2447591	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	67412203	rs143219248	CCACA	C,CCA	3990.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.34;ReadPosRankSum=0.507;SOR=0.687;set=HC	GT:AD:AF:DP	1/2:9,49,113:0.29,0.66:171
chr11	67412771	rs17148450	G	C	18503.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,717:1.00:717
chr11	67414246	rs948444	T	C	6213.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	67430589	rs78402723	A	G	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	67430762	rs1551886	T	C	12639.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr11	67431038	rs1979375	G	A	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	67431086	rs113365834	G	T	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	67431110	rs1979376	G	A	9820.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr11	67432804	rs2447571	T	C	19560.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:0,765:1.00:765
chr11	67432854	rs6591270	T	C	14135.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr11	67433708	rs5792424	C	CG	12586.73	.	AC=2;AF=1.00;AN=2;DB;DP=404;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr11	67433758	rs1551887	G	A	11901.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr11	67433869	rs1551888	C	T	11595.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr11	67434010	rs1871032	C	T	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	67434416	rs4646823	C	A	10753.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr11	67564162	rs75324740	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.09;QD=22.20;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	67564181	rs79260939	G	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.06;QD=24.78;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	67564197	rs72657419	T	C	1348.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.009;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.321;MLEAC=2;MLEAF=1.000;MQ=48.07;MQRankSum=-1.449;QD=23.25;ReadPosRankSum=-0.645;SOR=0.504;set=HC	GT:AD:AF:DP	1/1:1,57:0.98:58
chr11	67564293	rs117919932	T	A	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.44;QD=24.15;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	67765163	rs5792426	A	AG	8446.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	67770384	rs3751085	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	67782947	rs2286170	G	T	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	67786064	rs11433668	A	AC	6527.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,262:0.99:264
chr11	67786764	rs1636207	A	G	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	67787366	rs4646811	CCT	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.330;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr11	67789293	rs58160034	G	GC	27953.73	.	AC=2;AF=1.00;AN=2;DB;DP=780;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=37.27;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,750:1.00:750
chr11	67790243	rs3764818	C	T	6573.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=25.58;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	67795299	rs308341	G	A	34555.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=1305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.088;QD=26.54;ReadPosRankSum=0.013;SOR=0.310;set=HC	GT:AD:AF:DP	1/1:1,1301:1.00:1302
chr11	67795353	rs3751082	G	A	23576.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.671;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.151;QD=26.52;ReadPosRankSum=1.732;SOR=0.106;set=HC	GT:AD:AF:DP	1/1:2,887:1.00:889
chr11	67795378	rs11436139	G	GC	26917.73	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:0,754:1.00:754
chr11	67799731	rs3133266	C	G	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	67800494	rs3115545	T	G	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	67801282	rs3133267	C	T	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	67801517	rs3115546	G	T	15809.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:1,613:1.00:614
chr11	67814473	rs5792432	C	CT	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.337;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.295;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.393;QD=4.70;ReadPosRankSum=1.113;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr11	67814979	rs2471829	G	C	20673.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	1/1:0,782:1.00:782
chr11	67815086	rs12418239	G	A	25707.77	.	AC=2;AF=1.00;AN=2;DB;DP=994;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=26.67;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,964:1.00:964
chr11	67829386	rs200958186	G	GA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=0.628;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:167,35:0.17:202
chr11	67837771	rs3819255	A	T	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	67957518	rs2512606	A	T	11783.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr11	68030015	rs901827	C	T	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	68115764	rs643981	C	T	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	68131124	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=3.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-1.220;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr11	68131167	rs10791978	A	T	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	68133035	rs314776	T	C	8739.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	68153710	rs17848255	C	T	8362.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	68157299	rs4988320	G	A	8976.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	68170825	rs687482	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	68170833	rs686921	G	T	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=2.726;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	68171013	rs545382	T	C	17557.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,693:1.00:693
chr11	68173861	rs471966	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	68177318	.	C	CA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=4.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.672;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:75,21:0.22:96
chr11	68179166	rs689179	A	G	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr11	68192690	rs556442	G	A	12196.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,471:1.00:471
chr11	68214119	rs2242340	C	T	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	68305494	rs60212556	C	T	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	68315798	rs10736668	C	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	68326236	rs12271290	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	68338491	.	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.506;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr11	68341722	rs3740631	T	G	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	68343593	rs3740629	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	68358106	rs5792446	CTTTTA	C	1972.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	68377602	rs7104877	A	C	11935.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr11	68382193	rs12941	C	T	6672.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	68382591	rs1996	C	T	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	68456410	rs3136540	T	C	10483.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	68458470	rs1042577	T	C	7348.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chr11	68476011	rs4930597	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	68530318	rs7112615	C	A	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr11	68548260	rs3019576	C	A	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr11	68549340	rs2228502	A	G	11346.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr11	68566647	.	GAAA	G	2661.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.53;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	68566651	.	A	ACGCT	2661.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.70;SOR=2.428;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	68566839	rs3019603	G	A	4414.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:4,189:0.98:193
chr11	68658686	rs61887147	C	A	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	68664011	rs372240224	G	A	7205.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	68671477	rs1249463	T	C	10078.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr11	68678962	rs560096	T	C	6955.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	68700701	rs645436	G	C	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	68703009	rs598255	C	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	68705674	rs17612126	C	A	6061.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	68705876	rs4378405	G	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	68748003	rs34847539	T	C	15518.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr11	68773810	rs57545280	AG	A	797.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	68816370	rs4930642	A	G	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	68822739	rs1470892	T	C	30080.77	.	AC=2;AF=1.00;AN=2;DB;DP=1172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,1158:1.00:1158
chr11	68825037	rs3750973	A	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	68830226	rs10792015	G	A	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	68831293	rs11228472	C	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	68834968	rs6591368	T	C	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	68835182	rs10750840	T	A	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	68839334	rs10896415	G	A	14805.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr11	68840014	rs3750963	G	A	7025.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	68840397	rs1466221	T	C	9770.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	68840412	rs1466220	C	G	10284.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	68840617	rs3750966	T	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	68845867	rs7945151	G	A	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	68846098	rs4930649	A	G	22191.77	.	AC=2;AF=1.00;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	1/1:0,831:1.00:831
chr11	68846276	.	G	C	13377.77	.	AC=2;AF=1.00;AN=2;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr11	68846519	rs7124310	A	C	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	68847138	rs12804893	T	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	68849073	rs3829240	G	A	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=1.652;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	68851414	rs2376558	T	C	7503.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:2,299:0.99:301
chr11	68851466	rs896973	G	T	7006.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	68855233	rs1551305	G	A	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	68855363	rs3829241	G	A	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	69588729	rs2073464	G	A	23815.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	1/1:0,921:1.00:921
chr11	69589959	rs9666584	A	G	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	69924226	rs2509134	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	69924476	rs11233122	T	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	69931876	rs2509128	C	G	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	69933717	rs2509133	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	69949135	rs55698329	GCC	G	1990.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=39.81;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	69949370	rs113704420	T	TA	490.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=0.428;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:4,28:0.88:32
chr11	69954412	rs2509182	A	G	8160.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	69957940	rs2515251	C	A	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	69962642	rs2515245	A	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	69970412	rs2509160	G	A	13505.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,528:1.00:528
chr11	69970637	rs2515258	A	G	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	69999122	rs10160639	A	C	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	69999252	rs3781663	G	A	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	70001976	rs10751195	A	G	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	70002185	rs34657087	AT	A	1973.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr11	70002987	rs3781658	G	A	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	70007311	rs2276066	A	G	12898.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr11	70007392	rs2276067	A	G	22573.77	.	AC=2;AF=1.00;AN=2;DB;DP=890;set=Intersection	GT:AD:AF:DP	1/1:0,877:1.00:877
chr11	70007484	rs2276068	C	G	9104.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	70007865	rs2155461	A	C	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	70009720	rs11235460	G	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	70013186	rs3781654	G	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	70016247	rs35843284	T	TG	2660.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr11	70016922	rs7127005	C	T	9031.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	70016944	rs3842255	AT	A	13551.73	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr11	70031909	rs7937532	C	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	70049523	rs1131677	A	G	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	70118251	rs670012	T	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.61;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	70118489	rs546502	G	A	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	70179672	rs2282481	C	T	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	70200594	rs7943389	C	T	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	70208311	rs7130178	G	A	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	70208350	rs10751231	G	A	10601.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	70211574	rs670310	A	G	12753.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr11	70222604	rs664130	G	A	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	70229171	rs552282	G	A	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	70253586	rs569732	T	C	4767.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=0.039;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:2,189:0.99:191
chr11	70279766	rs643301	C	T	8809.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	70280992	rs3802780	G	A	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	70349061	rs7110158	A	G	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	70506206	rs525304	G	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	70507605	.	TACACACACACACACACACACACACACACACACAC	T,TAC	6159.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=197;set=Intersection	GT:AF:DP	1/2:0.17,0.83:151
chr11	70544937	rs7117514	A	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	70672399	rs3019835	G	A	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	70757705	rs4246962	C	T	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	70761002	.	TA	T	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.646;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:95,36:0.27:131
chr11	70766554	rs4077321	C	T	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	70766664	rs4495913	A	G	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	70789000	rs11238042	G	A	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	70798895	rs35132270	CG	C	10275.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	70798902	rs34650500	G	T	10610.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	71146577	rs909217	G	A	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	71146691	rs760241	A	G	10378.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr11	71146952	rs1792268	G	A	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	71149069	rs949176	A	G	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	71150217	rs2852853	C	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	71152461	rs949177	A	G	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	71153459	rs11603330	C	A	12263.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr11	71155153	rs1790334	A	G	20780.77	.	AC=2;AF=1.00;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	1/1:0,794:1.00:794
chr11	71155171	rs1044482	C	T	21565.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,818:1.00:818
chr11	71164471	rs12789751	G	A	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr11	71164544	rs12791871	A	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	71166060	rs2276359	T	TG	5387.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	71166337	rs1790373	A	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	71169547	rs2276360	G	C	10657.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr11	71169648	rs2276361	A	G	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	71174452	rs2276362	A	G	18086.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,718:1.00:718
chr11	71174589	rs1629304	T	C	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	71183474	rs2282621	C	T	6199.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.20;ReadPosRankSum=-0.838;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,244:0.99:246
chr11	71183477	rs2282620	C	T	10801.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	71183645	rs2282619	T	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	71184190	rs7935125	C	A	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	71184678	rs7950441	A	C	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	71185479	rs2276354	T	C	13754.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,534:1.00:534
chr11	71185518	rs2186778	T	C	17593.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,679:1.00:679
chr11	71188502	rs3794065	G	A	8507.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	71189436	rs2276353	T	C	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	71192602	rs3814731	T	C	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	71192851	rs3814734	A	G	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	71279936	rs72475645	A	C	4085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=792;ExcessHet=3.0103;FS=10.464;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-13.097;QD=5.18;ReadPosRankSum=6.061;SOR=1.424;set=HC	GT:AD:AF:DP	0/1:538,250:0.32:788
chr11	71279995	rs200834593	C	T	4749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.519;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=14.326;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-6.031;QD=9.75;ReadPosRankSum=-2.540;SOR=1.611;set=HC	GT:AD:AF:DP	0/1:345,142:0.29:487
chr11	71280000	.	T	G	4672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;ClippingRankSum=0.000;DP=461;ExcessHet=3.0103;FS=11.146;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-5.653;QD=10.18;ReadPosRankSum=-4.225;SOR=1.503;set=HC	GT:AD:AF:DP	0/1:323,136:0.30:459
chr11	71280070	.	G	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.554;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=22.534;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-7.052;QD=1.86;ReadPosRankSum=-1.476;SOR=4.181;set=HC	GT:AD:AF:DP	0/1:104,16:0.13:120
chr11	71280089	rs78987639	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.348;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.898;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=-5.100;QD=2.25;ReadPosRankSum=-2.110;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:57,6:0.10:63
chr11	71290670	rs2015464	C	G	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	71290740	rs4081429	A	C	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.71;QD=25.18;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	71290790	.	A	ACAGCAGCTGGACTGGGAGCAGCAGGACCTG	1195.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.14;MQRankSum=-1.686;QD=66.43;ReadPosRankSum=-0.575;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr11	71507022	rs374595711	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.337;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-3.711;QD=1.37;ReadPosRankSum=1.670;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr11	71507152	rs117374975	T	G	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.629;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=14.974;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-22.339;QD=3.80;ReadPosRankSum=1.864;SOR=2.060;set=HC	GT:AD:AF:DP	0/1:493,72:0.13:565
chr11	71507157	rs150702586	CA	TG	2437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.781;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=3.683;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-21.873;QD=3.88;ReadPosRankSum=-1.294;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:531,97:0.15:628
chr11	71507232	rs113587125	C	G	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:371,150:0.29:521
chr11	71507261	rs111708284	A	G	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:200,128:0.39:328
chr11	71576817	rs57369261	G	GT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-3.006;QD=0.54;ReadPosRankSum=2.026;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:241,48:0.17:289
chr11	71634606	rs11446262	G	GT	312.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-0.000;QD=14.89;ReadPosRankSum=0.126;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:3,18:0.86:21
chr11	71668362	rs3216157	CT	C	3494.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr11	71701523	rs2276384	G	A	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	71707465	rs1055452	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	71712175	rs1892919	G	A	4989.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	71714526	rs949324	G	C	16585.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	71714526	.	GGT	CGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=1;HapScore=1;MGOF=16;MMLQ=23;MQ=59.95;NF=124;NR=87;PP=2947;QD=20;SC=GACCAGGTGAGGTCAGCATCG;SbPval=0.57;Source=Platypus;TC=222;TCF=128;TCR=94;TR=211;WE=71714536;WS=71714516;set=Platypus	GT:AD:AF:DP	1/1:11,211:0.95:222
chr11	71714528	rs949323	T	G	16585.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr11	71715215	rs2845857	C	G	29154.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,657:1.00:657
chr11	71715218	rs2852365	T	C	29031.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,641:1.00:641
chr11	71719619	rs2155145	G	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	71727422	rs1057992	A	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	71728543	rs34393610	G	GA	1981.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:11,99:0.90:110
chr11	71728908	rs11278712	AGTCAAC	A	2655.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	71729656	rs949325	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	71730715	rs2298456	T	A	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	71733519	rs10128658	C	T	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	71734211	rs2298457	T	C	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	71740378	rs35948003	A	AAC	13168.73	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	71740521	rs1939247	A	T	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	71797422	rs597513	T	A	10983.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,427:1.00:427
chr11	71849741	rs652197	C	T	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	71883540	rs633738	G	A	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	71932120	rs2508202	G	C	23380.77	.	AC=2;AF=1.00;AN=2;DB;DP=917;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,888:1.00:888
chr11	72281818	rs380126	A	G	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,275:0.99:277
chr11	72281884	rs433640	C	T	14152.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr11	72282039	rs409512	T	C	41344.77	.	AC=2;AF=1.00;AN=2;DB;DP=1622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,1611:1.00:1611
chr11	72289176	rs379276	C	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	72289291	rs1135029	T	C	8841.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	72290199	rs11605051	G	A	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	72291477	rs56350365	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	72291883	rs644698	C	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	72291927	rs577536	T	C	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	72292167	rs3781939	G	T	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.05;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	72292176	rs7108477	C	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	72292185	rs3781938	C	A	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	72292353	rs57803658	G	GA	6036.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	72292860	rs376724	C	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	72293039	rs379638	G	A	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	72293079	rs414178	A	G	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	72293602	rs4944557	A	G	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	72294714	rs408269	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	72294734	rs56267207	A	AC	321.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	72295502	rs366711	T	C	20520.77	.	AC=2;AF=1.00;AN=2;DB;DP=832;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,816:1.00:816
chr11	72295906	rs452228	A	G	22421.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.861;ClippingRankSum=0.000;DB;DP=881;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.74;ReadPosRankSum=-1.363;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:1,870:1.00:871
chr11	72296039	rs907850	G	T	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	72296700	rs424234	C	T	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	72326210	rs572421	A	G	8383.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	72361893	rs72349218	TCCCTGAC	T	2842.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.85;SOR=4.548;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	72361920	.	TACACACACACACACACACAC	T,TAC	3532.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=147;set=Intersection	GT:AF:DP	1/2:0.26,0.73:95
chr11	72399451	rs7944294	A	G	8758.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	72404003	rs11235567	A	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	72404958	rs12276972	A	C	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	72408055	rs56200889	G	C	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	72409189	rs12575364	C	T	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	72416732	rs4598696	GG	CT	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	72528973	rs891655	C	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	72532569	rs1864651	G	T	8899.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr11	72532621	rs1864652	T	G	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	72532708	rs11235603	C	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	72533711	rs4944806	A	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	72536272	rs2303969	G	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	72538141	rs3862793	T	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	72540225	rs891657	G	T	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	72598704	rs7129851	G	A	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	72788823	rs6592510	C	T	4309.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	72945341	rs2511241	C	T	18259.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,697:1.00:697
chr11	72946020	rs1783596	C	T	33093.77	.	AC=2;AF=1.00;AN=2;DB;DP=1285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,1270:1.00:1270
chr11	72946140	rs3741156	G	C	24132.77	.	AC=2;AF=1.00;AN=2;DB;DP=961;set=Intersection	GT:AD:AF:DP	1/1:0,931:1.00:931
chr11	73362766	rs670811	C	T	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	73366751	rs3741147	T	G	7153.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	73390618	rs17132305	A	G	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	73441772	rs2037709	A	C	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	73471472	.	G	A	899.77	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	73498933	rs1792174	T	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	73528717	rs1670564	G	C	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	73587997	rs2010583	G	C	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	73588240	rs1122373	G	A	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	73600351	rs12295206	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	73610110	rs1670558	A	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	73611478	rs2067913	C	G	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	73611520	rs3741139	A	G	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	73620537	rs3741138	C	G	8947.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	73638306	rs935985	G	A	8459.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	73669310	rs10793068	C	A	12382.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr11	73669334	rs10793069	A	C	13887.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr11	73670645	rs653263	T	C	7067.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	73686859	rs10535527	ACTT	A	1568.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	73689104	rs660339	G	A	11177.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr11	73715542	rs2075577	G	A	6670.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	73717024	rs1726747	AT	TC	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	73717074	rs11235972	G	A	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	73717121	rs2075576	C	T	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	73717254	rs1800006	A	G	15538.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr11	73785326	rs4453265	T	C	6289.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	73789777	rs1726735	T	G	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	73796608	rs1095424	T	C	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	73803389	rs7941525	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	73806443	rs11235995	C	T	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	73824724	.	CAA	C	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=1.308;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr11	73825503	rs10898957	T	C	9008.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	73833944	rs60834556	G	A	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	73833957	rs145193996	C	CTGTCTGGCAAGTGA	353.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	73844434	rs61901246	A	G	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	73850973	rs11236018	C	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	73881580	rs3814724	T	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	73882260	rs1726746	T	G	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	73947080	rs2302508	C	G	5391.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	73964689	rs3741133	G	A	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	73978243	rs3741132	G	A	16149.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:1,626:1.00:627
chr11	73988167	rs2282488	C	T	7459.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	73999993	.	C	CAA	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.538;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr11	74000180	rs35776286	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-1.849;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr11	74015599	rs10898976	G	C	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	74047683	rs1044782	A	G	25224.77	.	AC=2;AF=1.00;AN=2;DB;DP=1011;set=Intersection	GT:AD:AF:DP	1/1:0,1008:1.00:1008
chr11	74049569	rs3867270	A	G	8090.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	74053547	rs592644	C	T	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	74054346	rs641271	G	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	74057647	rs519083	T	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	74057931	rs3741130	C	T	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	74079475	rs11236077	A	G	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	74085384	rs61288268	C	T	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	74085420	rs35170680	T	G	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	74109166	rs12049823	A	G	11071.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	74109342	rs904155	C	T	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	74110353	rs515924	A	G	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	74110542	rs676103	T	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	74168411	rs2270676	A	G	11973.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr11	74204198	rs10736797	G	A	15227.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.176;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-0.180;SOR=0.123;set=HC	GT:AD:AF:DP	1/1:2,601:1.00:603
chr11	74204269	rs10736798	T	G	11932.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,460:1.00:460
chr11	74204727	rs4944895	A	G	5780.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	74207856	rs643738	G	A	6857.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.980;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=10.976;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.94;ReadPosRankSum=0.502;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:3,272:0.99:275
chr11	74303841	rs2298572	T	C	8180.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.71;SOR=1.212;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	74303850	rs2298573	T	C	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	74329615	rs4944052	T	C	13058.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr11	74330980	rs10501417	A	G	5173.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	74347434	rs4944920	G	C	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	74379809	rs56330626	G	GT	2541.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.239;QD=22.10;ReadPosRankSum=1.050;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:4,111:0.97:115
chr11	74379887	rs117526209	C	T	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	74407676	rs3819242	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	74408384	rs10751240	C	T	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr11	74408619	rs3741124	C	G	44119.77	.	AC=2;AF=1.00;AN=2;DB;DP=1016;set=Intersection	GT:AD:AF:DP	1/1:0,1006:1.00:1006
chr11	74408633	rs3741123	A	G	43065.77	.	AC=2;AF=1.00;AN=2;DB;DP=1041;set=Intersection	GT:AD:AF:DP	1/1:0,1028:1.00:1028
chr11	74413843	rs34695217	T	C	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	74419357	rs1944937	C	T	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	74460517	rs187201698	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	74546948	.	T	C	4209.77	.	AC=2;AF=1.00;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	74641436	.	GA	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.131;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:121,34:0.22:155
chr11	74645032	rs140602440	G	GTTCA	2399.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr11	74660504	rs1282689	A	C	12394.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr11	74660631	rs1282690	G	A	19712.77	.	AC=2;AF=1.00;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	1/1:0,769:1.00:769
chr11	74674616	rs562581	A	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr11	74676794	rs514534	G	C	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	74700896	rs681566	A	G	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	74705696	rs544115	T	C	29409.77	.	AC=2;AF=1.00;AN=2;DB;DP=1134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,1128:1.00:1128
chr11	74862356	rs2851069	T	C	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	74862391	rs1944612	A	G	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	74904362	rs1621378	T	C	15736.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,607:1.00:607
chr11	74992267	rs746168	A	C	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	74995350	rs647630	C	T	8146.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr11	75017436	rs536852	A	G	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	75062547	rs34867163	A	G	8337.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr11	75062783	rs35382855	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	75167704	rs1793410	T	C	14956.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr11	75188569	rs1790149	C	T	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	75277628	rs584961	A	G	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	75277992	rs651581	C	T	14588.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=26.29;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,555:1.00:555
chr11	75278040	rs35462148	G	GTCC	10995.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=3.941;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.392;QD=42.62;ReadPosRankSum=2.611;SOR=1.628;set=HC	GT:AD:AF:DP	1/1:6,252:0.98:258
chr11	75378674	rs12225010	A	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	75501852	rs2510635	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	75902571	rs2508779	A	G	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	75905800	rs1533767	G	A	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	75917189	rs1717626	G	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	75917334	rs1879633	T	C	22158.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.954;ClippingRankSum=0.000;DB;DP=875;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;MQRankSum=0.072;QD=25.59;ReadPosRankSum=1.862;SOR=0.358;set=HC	GT:AD:AF:DP	1/1:2,864:1.00:866
chr11	76207633	rs10899226	G	A	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	76207709	rs72930511	G	A	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	76237725	rs11363199	CA	C	2118.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	76257215	rs3753051	T	C	8088.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	76260909	.	C	CT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-2.410;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr11	76370792	rs4304809	A	G	12685.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,498:1.00:498
chr11	76372418	rs3740778	T	C	11337.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr11	76393988	rs145698889	C	T	6178.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	76400254	rs11236860	T	C	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	76400343	rs10793181	C	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	76402532	rs76049815	C	T	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	76406341	rs10751260	G	C	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	76415184	rs11236878	T	C	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	76418482	rs11607917	T	C	13623.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	76418737	rs2120898	A	G	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	76427731	rs10751261	T	C	20736.77	.	AC=2;AF=1.00;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	1/1:2,795:1.00:797
chr11	76429160	rs10899266	T	A	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	76430529	.	C	G	1191	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=1;MGOF=8;MMLQ=23;MQ=59.44;NF=42;NR=16;PP=1191;QD=21.1339864232;SC=GTCTGCACGACGAGCATGCCT;SbPval=0.54;Source=Platypus;TC=58;TCF=42;TCR=16;TR=58;WE=76430537;WS=76430519;set=Platypus	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	76430684	rs35033550	A	C	9275.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr11	76506548	rs75410995	G	A	6544.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	76506572	rs1149620	T	A	9096.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	76507403	rs11236938	G	A	16089.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr11	76507692	rs1149621	T	A	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	76579419	rs376319450	ATCTC	A	312.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.95;QD=39.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	76579433	.	CTC	GTG	29	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=2;HapScore=4;MGOF=10;MMLQ=26;MQ=55.68;NF=1;NR=1;PP=29;QD=41.2339374311;SC=CTCTCTCTCTCTCTGTGTGTG;SbPval=0.56;Source=Platypus;TC=9;TCF=3;TCR=6;TR=2;WE=76579443;WS=76579409;set=Platypus	GT:AD:AF:DP	1/1:7,2:0.22:9
chr11	76637651	rs4379869	G	A	7940.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	76637680	rs4479014	G	A	8321.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	76637730	rs4604914	C	G	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	76637785	rs4457775	G	A	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	76668478	rs4945125	C	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	76687399	rs1517909	A	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	76687448	rs1517908	A	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	76701365	rs3824889	G	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	76701606	rs3740767	G	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	76705180	rs56841188	CT	C	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-1.637;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr11	76751541	rs11292198	CT	C	30256.73	.	AC=2;AF=1.00;AN=2;DB;DP=830;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.94;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,819:1.00:819
chr11	76751584	rs11292199	CT	C	39208.73	.	AC=2;AF=1.00;AN=2;DB;DP=874;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.35;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,846:1.00:846
chr11	76751587	rs34153015	G	A	39207.73	.	AC=2;AF=1.00;AN=2;DB;DP=844;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.79;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,838:1.00:838
chr11	76751603	rs11292200	CT	C	37676.73	.	AC=2;AF=1.00;AN=2;DB;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=44.85;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,840:1.00:840
chr11	76799004	rs7121748	T	C	11264.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr11	76868372	rs762667	T	C	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	76870634	rs4944145	T	C	15098.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,584:1.00:584
chr11	76874149	rs111580784	C	CAT	1852.14	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:6,59:0.91:65
chr11	76876976	rs11374303	G	GT	738.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	76893280	rs57741157	A	AG	2489.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	76923352	rs12418037	A	G	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	76924130	rs2276289	A	T	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	76925040	rs883224	G	A	9682.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr11	76925075	rs948959	G	T	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	76928025	rs12363944	A	G	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	76928149	rs2282576	A	G	6020.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	76954898	rs7104577	A	G	8486.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr11	76979465	rs1618188	A	C	12741.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr11	76979889	rs1621624	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	76979900	rs1613357	C	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	76980743	rs1620915	T	C	2578.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.313;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	77051820	rs51500	C	T	9183.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	77090211	rs562939	T	C	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	77389238	.	CT	C	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=4.843;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.676;QD=9.47;ReadPosRankSum=1.579;SOR=2.128;set=HC	GT:AD:AF:DP	0/1:7,31:0.82:38
chr11	77531810	rs10751277	T	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	77672189	.	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.363;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:74,26:0.26:100
chr11	77734001	rs11237360	G	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	77734007	rs11237361	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.22;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	77734209	rs11237362	T	C	19158.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr11	77749617	rs10793277	G	A	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	77775466	rs545869	C	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	77790653	rs534418	T	C	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	77790863	rs499799	C	G	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	77811990	rs1263505	T	C	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	77813997	rs35218171	CA	C	235	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.079;QD=8.39;ReadPosRankSum=-0.866;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr11	77823557	rs624350	G	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	77825275	rs10899440	A	G	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	77825642	rs653721	A	G	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	77832076	rs518624	T	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	77838373	rs59662312	TA	T	699.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:4,45:0.92:49
chr11	77850517	rs10793289	C	A	23360.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	1/1:2,919:1.00:921
chr11	77884782	rs230661	C	T	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	77921527	rs2512526	G	C	19148.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:1,736:1.00:737
chr11	78204073	rs66546995	CACAGAT	C	4472.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	78204299	rs56279811	T	TA	1686.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	78204380	rs4474465	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	78277277	rs10751296	A	G	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	78279790	rs10501429	T	G	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	78372536	rs2277277	G	A	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	78437182	rs689369	G	A	11758.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr11	78440736	rs512004	G	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	78498022	rs11237621	C	T	9948.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	78516320	.	T	TCTCCCCACCCTCCACACCCCACCCCTCATTCTTCCCCACCCCCACTCCTCCTCCACCCACCCTTC	4193.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=279.58;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	78602525	rs10736817	C	A	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	82443417	rs3780	C	T	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	82443672	rs6592081	C	G	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	82444216	rs986097	C	G	9203.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	82444226	rs986096	C	A	9653.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	82868798	rs150185044	C	G	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	82874970	rs10898088	G	A	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	82921538	rs553484	C	T	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	82952108	rs625102	T	C	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	82959338	rs200602645	TACACAC	T	359.90	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.802;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.99;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr11	82967023	rs565276	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.57;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	82968164	rs628223	G	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	82968418	rs657824	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	82973004	rs8789	C	T	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	82973045	rs645954	C	T	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	82985161	rs34416960	GA	G	212.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr11	82996986	rs494791	A	C	20454.77	.	AC=2;AF=1.00;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	1/1:0,782:1.00:782
chr11	83585289	rs144508115	G	GGGAAGGAAGGAAGGAGAGAGGGAA	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.32;QD=90.53;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	83585584	rs75948804	TA	AT	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=39.96;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	83691501	rs56209818	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	83810113	rs3750917	T	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	83878075	rs1869472	G	A	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	83962251	rs7933566	A	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	85339542	rs575050	G	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	85346865	rs58671332	CT	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.139;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr11	85374467	rs71274435	G	GA	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-1.136;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:292,70:0.19:362
chr11	85418591	rs3069561	AACAG	A	6758.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	85419193	rs290197	C	T	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=30.26;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	85419196	rs201488817	C	CA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.701;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr11	85435001	rs34653849	T	TA	786.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	85435730	rs550404	C	T	7362.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	85436352	rs641393	G	A	7640.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	85436394	rs556669	T	C	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	85436500	rs580459	T	C	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	85436699	rs598346	A	G	9857.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:1,390:1.00:391
chr11	85436868	rs597480	G	C	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	85437896	rs491867	A	G	12109.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr11	85447611	rs680498	T	C	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	85456703	rs647912	T	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	85576113	rs11389838	C	CT	3194.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.04;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	85576127	rs36093844	C	T	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	85584151	rs142446208	G	GT	304.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	85593529	rs17817308	G	A	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	85597163	rs17744699	C	T	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	85609806	rs10501601	A	T	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	85610109	rs725459	G	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	85626569	rs60185300	G	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	85627108	rs7927222	T	C	10164.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr11	85630557	rs185817115	G	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	85671702	rs618679	A	C	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	85685574	rs4944550	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	85692061	rs17817690	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	85692342	rs2508688	A	C	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	85714288	rs7951988	T	C	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	85722238	rs57263198	G	GA	305.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	85723527	rs17745153	C	T	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	85725937	rs592297	C	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	85966177	rs7950735	G	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	85977117	rs10898460	G	A	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	85979497	.	G	T	2217.77	.	AC=2;AF=1.00;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	85979636	rs71040225	C	CGTGTGTGT	1038.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr11	86111700	rs12272824	A	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	86119396	rs4412777	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	86120280	rs57270595	C	CT	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-0.527;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:12,30:0.71:42
chr11	86123467	rs3741006	G	A	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	86133784	rs1056194	C	T	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	86153911	rs7548	G	A	5660.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	86157998	rs4944580	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	86161147	rs4944581	A	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	86161388	rs1042780	C	G	9692.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	86175193	rs11234662	A	G	6038.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.754;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=3.027;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.16;ReadPosRankSum=-1.079;SOR=0.109;set=HC	GT:AD:AF:DP	1/1:2,248:0.99:250
chr11	86175300	rs605251	G	A	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	86198596	rs2279048	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=25.99;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	86208897	rs609848	A	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	86267678	rs4943943	G	A	12618.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr11	86270684	rs34249558	C	T	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	86519925	.	CGT	C	173.73	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,13:0.18:72
chr11	86650282	rs4631906	T	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	86662182	rs61749246	C	A	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr11	86782716	rs5793233	AT	A	1891.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.68;ReadPosRankSum=-2.437;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:4,103:0.96:107
chr11	86782728	rs2513239	T	G	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.90;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	86868347	rs556139	C	T	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=25.89;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	86868361	rs59532014	GT	G	1144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.058;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.491;QD=11.92;ReadPosRankSum=0.522;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:17,79:0.82:96
chr11	87013252	rs2276103	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	87013438	rs2276102	G	A	10040.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr11	87016818	rs111653145	A	AAAATAAAT	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	87016869	rs199727648	C	CT	296.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.632;QD=12.90;ReadPosRankSum=-0.560;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr11	87032215	rs7112344	T	C	1182.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.936;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.586;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=1.199;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr11	87847018	rs3740925	C	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr11	87908448	rs302646	A	G	16849.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,641:1.00:641
chr11	87908563	rs3812730	G	A	13420.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr11	88033661	rs217116	A	G	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	88045583	rs217086	A	G	7918.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	88045815	rs5793312	C	CT	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	88059683	rs217060	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	88061405	rs580743	A	C	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	88068052	rs217076	G	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	88068329	rs217077	T	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	88070563	rs580808	C	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	88242024	rs2941563	T	G	13541.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.703;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=-1.347;SOR=0.296;set=HC	GT:AD:AF:DP	1/1:1,532:1.00:533
chr11	88258689	rs4753486	C	T	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	88338165	rs3816649	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	88645129	rs626218	T	A	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.77;QD=25.60;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	88911084	.	A	G	968.77	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	88925242	rs10765196	G	C	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	88925328	rs10765197	A	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	89017961	rs1126809	G	A	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	89133449	rs317139	C	T	13778.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.60;QD=25.38;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,543:1.00:543
chr11	89221958	rs597046	G	C	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	89223616	rs490934	C	G	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	89223931	rs2304500	G	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	89224101	rs3816123	G	T	10299.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.56;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr11	89224131	rs34495256	T	TCTC	16154.73	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=45.00;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,359:1.00:359
chr11	89224229	rs35177439	G	GT	7482.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	89224326	rs10830279	G	A	11384.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr11	89224453	rs2289125	A	C	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	89403414	rs10734120	C	T	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	89531812	.	A	G	4614.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.478;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=3.732;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=9.838;QD=19.64;ReadPosRankSum=1.005;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:29,206:0.88:235
chr11	89774197	rs200350663	CT	C	1191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.89;MQRankSum=-7.133;QD=8.51;ReadPosRankSum=1.508;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:39,101:0.72:140
chr11	89909096	.	A	ATG	2581.73	.	AC=1;AF=0.500;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:15,90:0.86:105
chr11	89935586	rs1045861	G	T	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	89936093	rs3758757	T	C	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	89938615	rs36109540	AAG	A	359.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	89939448	rs1943381	G	A	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	89939569	rs723715	T	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	89943548	rs3832739	T	TCAGA	3066.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	89946502	rs199835809	CAAA	C	2215.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.35;SOR=2.078;set=HC	GT:AD:AF:DP	1/1:1,72:0.99:73
chr11	89951367	rs34787918	GA	G	1138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.472;QD=11.86;ReadPosRankSum=-0.761;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:17,79:0.82:96
chr11	89951510	rs10830446	G	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	91545212	rs4753345	C	G	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	92570812	rs11020075	TC	AA	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	92577031	rs4753068	C	T	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	92577070	rs4753419	T	C	6797.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	92590448	rs4753069	A	G	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr11	92599851	rs3847553	G	A	9705.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	92600266	rs75649640	G	A	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	92615715	rs12224637	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	92615748	.	CCCT	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=0.991;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	92622244	rs73560556	G	T	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	92914765	rs61920515	T	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	93122128	rs72972364	C	T	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	93212161	rs2605594	A	G	18489.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,722:1.00:722
chr11	93212254	rs2658797	C	T	26694.77	.	AC=2;AF=1.00;AN=2;DB;DP=1042;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.77;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,1036:1.00:1036
chr11	93400052	rs7123801	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	93402096	rs1944101	C	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	93403067	rs1954994	G	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	93408831	rs10831088	G	A	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.14;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	93408958	rs35646565	C	CA	301.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;MQ=61.53;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	93412774	rs1944100	A	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	93425159	rs4753495	C	A	6631.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=5.734;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.027;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.75;ReadPosRankSum=0.258;SOR=0.132;set=HC	GT:AD:AF:DP	1/1:2,266:0.99:268
chr11	93454831	.	GGTGTGT	G,GGT	1170.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.381;QD=31.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:2,19,16:0.51,0.43:37
chr11	93457532	rs78544176	C	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	93462607	rs7131178	A	T	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	93463145	rs200136546	A	AT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=1.229;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:150,38:0.20:188
chr11	93463332	rs7101779	A	G	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	93463666	rs7119918	C	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	93464175	rs1944108	A	C	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	93466866	rs2155248	G	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	93474570	rs11280945	T	TGCGTGA	34778.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=1338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=-0.089;QD=26.55;ReadPosRankSum=0.343;SOR=0.414;set=HC	GT:AD:AF:DP	1/1:3,1307:1.00:1310
chr11	93474678	rs630648	G	C	16191.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=26.63;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,608:1.00:608
chr11	93474791	rs623510	G	T	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	93474827	rs631116	T	C	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	93483346	rs681321	G	A	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	93487008	rs623993	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	93490682	rs604414	T	A	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	93521405	rs676586	C	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	93527219	rs657177	T	C	8787.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	93527282	rs5793656	GA	G	1892.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	93534929	.	T	TGA	1042.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	93534930	.	TTC	GAT	1187	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=3;HapScore=1;MGOF=0;MMLQ=27;MQ=60.0;NF=15;NR=4;PP=1187;QD=65.814098677;SC=TCATAAAATTTTCGAATCATT;SbPval=0.57;Source=Platypus;TC=19;TCF=15;TCR=4;TR=19;WE=93534940;WS=93534920;set=Platypus	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	93534930	.	TTC	T	1042.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	93540914	rs72978409	T	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	93583790	rs10831106	T	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	93754508	rs2511403	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	93797619	rs1945783	A	G	8299.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:2,330:0.99:332
chr11	93801012	rs10765650	C	T	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	93801062	rs10765651	C	T	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	93803717	rs1878799	C	G	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	93806416	rs1914725	T	C	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	93834223	rs7927016	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	93844034	rs7925817	G	T	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	93862493	rs1138800	A	C	9501.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	93911830	rs72972543	G	A	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	93913458	rs3020015	T	C	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	94179125	rs1014666	T	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	94197568	rs640627	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	94203868	rs610611	A	T	8130.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	94212048	rs535801	C	T	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	94212154	rs680695	A	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	94223855	rs608452	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	94225807	rs496797	C	T	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	94225920	rs497763	C	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	94229665	rs540199	A	G	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	94261255	rs647484	C	G	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	94261280	rs11605546	G	A	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	94320237	rs7110167	T	C	5634.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	94326710	rs7119735	G	A	6593.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	94328339	rs515115	A	T	1321.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	94328340	rs11418768	T	TA	1312.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	94351397	rs57878936	T	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.13;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	94352884	rs146440470	T	C	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	94474044	rs11300560	GT	G	5027.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	94501849	rs2915239	G	A	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	94699391	.	T	TACAC	929.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr11	94699507	rs34805065	A	AT	3760.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=35.82;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	94704037	rs3737505	C	G	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	94704092	rs4753645	T	A	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	94704094	rs4753646	G	A	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	94704689	rs3831469	A	AAC,AACAC	3155.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=210;set=Intersection	GT:AF:DP	1/2:0.16,0.81:151
chr11	94704709	.	C	CACAG	1338	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=1;MGOF=18;MMLQ=27;MQ=59.9;NF=3;NR=54;PP=1338;QD=23.5789473684;SC=CACACACACACAGAGACTGTA;SbPval=0.51;Source=Platypus;TC=62;TCF=3;TCR=59;TR=57;WE=94704717;WS=94704699;set=Platypus	GT:AD:AF:DP	1/1:5,57:0.92:62
chr11	94705163	rs72977727	C	T	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	94782539	rs620838	G	A	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	94783070	.	A	G	6466.77	.	AC=2;AF=1.00;AN=2;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.65;QD=26.18;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	94800902	rs5793709	G	GC	54244.73	.	AC=2;AF=1.00;AN=2;DB;DP=1477;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=37.49;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,1447:1.00:1447
chr11	94823448	rs3016947	A	T	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	95528663	rs5793747	C	CT	1281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.578;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:20,80:0.80:100
chr11	95562286	rs199616632	G	C	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	95712897	rs7123133	G	T	11993.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr11	95713024	rs7123272	G	A	13562.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr11	95713175	rs74393839	C	T	1044.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.770;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=6.255;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.49;ReadPosRankSum=0.047;SOR=2.430;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr11	95825374	.	TTGCTGCTGCTGC	T,TTGC	9141.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=696;set=Intersection	GT:AF:DP	1/2:0.11,0.84:492
chr11	95825407	.	CTGCTGCTGT	C	2994	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=22;MMLQ=27;MQ=61.85;NF=6;NR=163;PP=2994;QD=20;SC=GCTGCTGCTGCTGCTGCTGTT;SbPval=0.84;Source=Platypus;TC=208;TCF=11;TCR=197;TR=169;WE=95825423;WS=95825397;set=Platypus	GT:AD:AF:DP	0/1:39,169:0.81:208
chr11	95825797	rs7931870	A	G	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	96092376	rs10765801	C	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	96106661	rs11021560	C	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	96123734	rs3842515	T	TG	801.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	96125435	rs10545425	CTT	C	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	99428929	rs11375374	C	CT	2164.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.55;ReadPosRankSum=1.353;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:2,94:0.98:96
chr11	99690286	rs10790978	T	G	1855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=-0.206;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:75,89:0.54:164
chr11	99690428	rs7125822	T	G	3824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=7.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-2.480;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:374,220:0.37:594
chr11	99690461	rs10893933	A	G	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=45.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-7.613;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:276,89:0.24:365
chr11	99941322	rs2059014	C	T	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	100061827	rs3031278	G	GA	1320.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	100168289	rs1944178	C	T	6292.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	100168320	rs75986029	T	TC	15036.73	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=37.78;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr11	100169829	rs1944180	A	G	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	100641200	rs7944598	A	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	100730087	rs661237	G	A	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	100730213	rs646392	G	A	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	100804088	rs626529	A	G	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	100807130	rs581921	T	C	9370.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr11	100811574	rs35159175	CAT	C	3827.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	100811690	rs661973	G	T	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	100812338	rs151209547	A	AAC	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	100812340	.	GAC	CAG	305	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=3;HapScore=2;MGOF=10;MMLQ=27;MQ=60.0;NF=6;NR=3;PP=305;QD=39.8297638736;SC=CTGATTCTAAGACACTCTACC;SbPval=0.54;Source=Platypus;TC=10;TCF=7;TCR=3;TR=9;WE=100812361;WS=100812330;set=Platypus	GT:AD:AF:DP	1/1:1,9:0.90:10
chr11	100812342	rs370937549	CACTCTACCCTAT	C	618.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=41.25;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	100812344	.	CTCTACCCTAT	C	1973	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=2;MGOF=10;MMLQ=24;MQ=60.86;NF=2;NR=4;PP=1973;QD=334.666666667;SC=TTCTAAGACACTCTACCCTAT;SbPval=0.65;Source=Platypus;TC=6;TCF=2;TCR=4;TR=6;WE=100812361;WS=100812330;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	100814409	rs619066	G	A	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	100814609	rs618155	G	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	100819305	rs633967	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	100819392	rs504081	A	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	100820440	rs138799665	C	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	100820555	rs11820715	C	G	12026.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr11	100820725	rs694556	A	T	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	100827326	rs151243237	AAATAT	A	14736.73	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	100830371	rs190097530	A	G	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	100830440	rs7950832	T	C	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	100830579	rs6590829	G	A	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	100830693	rs563460	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	100922404	rs578029	A	T	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	100933598	rs11571221	G	GAATGA	39.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.19;QD=19.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	100998105	rs11571153	C	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	100998623	rs1379130	G	A	6020.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	100999838	rs11437764	A	AG	3423.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	101375397	rs367841560	G	C	14186.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr11	101771248	rs3858418	G	A	12581.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr11	101771381	rs3858419	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	101775663	rs1661409	G	A	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	101778710	rs1661410	A	G	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	101786014	rs117883580	G	A	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	101818728	rs11225080	A	G	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	101826949	rs930469	T	C	33066.77	.	AC=2;AF=1.00;AN=2;DB;DP=1284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,1259:1.00:1259
chr11	101832478	rs7926728	G	T	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	101833644	rs7109233	C	T	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	101848990	rs3740931	A	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	101857758	rs6590942	G	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	101863706	rs1274901	C	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	101868415	rs1783742	C	T	9568.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	101918327	rs12804542	A	G	9311.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr11	101984718	rs2033082	A	G	113.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	102323160	rs2436036	C	T	7238.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	102449650	rs7934921	T	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	102449951	rs1940054	A	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	102465226	rs1711437	C	T	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	102465390	.	TAAGCTGCATCCACATTGG	T	563	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=22;MQ=59.86;NF=2;NR=7;PP=563;QD=70.3633872326;SC=AGCCACTTCGTAAGCTGCATC;SbPval=0.81;Source=Platypus;TC=29;TCF=9;TCR=20;TR=9;WE=102465415;WS=102465380;set=Platypus	GT:AD:AF:DP	0/1:20,9:0.31:29
chr11	102465502	rs144425539	CAA	C	561.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=10.447;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.544;QD=20.80;ReadPosRankSum=2.068;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr11	102477377	rs1784424	G	T	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	102477395	rs1784423	A	G	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	102482738	rs1711416	G	A	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	102495998	rs2245803	T	G	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	102563739	rs1276289	C	T	6987.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	102567207	rs1276286	T	A	7564.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	102567626	rs1940480	C	G	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	102573396	rs2701994	C	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	102575137	.	C	T	2129.77	.	AC=2;AF=1.00;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	102575379	rs61754772	T	C	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	102576358	rs2846707	T	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	102576375	rs1939015	G	A	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.59;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	102576382	rs12099177	G	A	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.69;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	102584023	rs1939018	T	A	10821.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr11	102584292	rs3740936	A	T	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	102584466	rs3832755	G	GT	3888.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.492;QD=21.02;ReadPosRankSum=0.689;SOR=0.620;set=HC	GT:AD:AF:DP	1/1:5,180:0.97:185
chr11	102584607	rs2509013	T	C	5805.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=25.80;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	102585874	rs4564300	T	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	102587062	rs3740938	G	A	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.126;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	102587180	rs35508510	G	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	102592049	.	TTG	T	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.611;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:86,20:0.19:106
chr11	102594427	rs6590984	T	C	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	102595666	rs2155052	C	G	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	102622758	rs72975593	A	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr11	102623115	rs531335	A	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	102623120	.	GGT	G	65	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=4;MGOF=3;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=65;QD=37.5;SC=AAGCTACACAGGTGTGTGTGT;SbPval=0.27;Source=Platypus;TC=7;TCF=1;TCR=6;TR=2;WE=102623129;WS=102623105;set=Platypus	GT:AD:AF:DP	1/0:5,2:0.29:7
chr11	102642716	rs17860997	A	AT	4414.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	102642899	rs17860995	C	T	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	102647310	rs470154	T	G	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	102649543	rs470277	T	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	102650246	rs17860949	G	A	8821.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:2,343:0.99:345
chr11	102666043	rs491152	A	G	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	102666164	rs5031036	T	C	10628.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr11	102666316	rs470558	T	C	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	102668022	rs10488	C	T	9382.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr11	102668603	rs5794198	CA	C	306.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=61.04;MQRankSum=0.834;QD=9.89;ReadPosRankSum=2.391;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr11	102668702	rs470358	T	C	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=25.46;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	102707339	rs639752	C	A	5967.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	102707914	rs575027	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	102709425	rs520540	A	G	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	102711338	rs591058	T	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	102713114	rs371497584	TTTTTGTTTTG	T	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.97;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	102713465	rs602128	A	G	14590.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.42;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,574:1.00:574
chr11	102713620	rs679620	T	C	7468.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	102713777	rs678815	G	C	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.64;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	102714266	rs144383864	A	T	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	102735103	rs476185	A	G	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	102738793	rs5794199	G	GT	12505.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	102738795	rs5003690	G	T	12514.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	102816356	rs3758854	G	A	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	102820965	rs17860556	G	A	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	102822649	rs11225490	T	C	261.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	102822733	rs3819089	C	T	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	102822966	.	T	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=88.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=2.049;SOR=6.735;set=HC	GT:AD:AF:DP	0/1:53,28:0.35:81
chr11	102825417	rs17860529	C	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	102826042	rs151254531	C	A	7986.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	102960146	rs200511043	G	GT	779.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.371;QD=19.49;ReadPosRankSum=-1.331;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr11	102985018	rs2245404	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	102991197	rs17301182	C	T	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	102996095	rs71465387	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.34;ReadPosRankSum=1.072;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	103004929	rs2450918	C	G	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	103022842	rs10664799	G	GT	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.932;QD=10.55;ReadPosRankSum=1.931;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr11	103025564	rs190084640	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	103027234	rs17301750	A	G	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	103029373	rs688094	G	A	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	103039707	rs144263658	G	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	103041040	rs12576037	A	C	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	103047007	rs585692	C	A	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	103048249	rs61899764	T	C	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	103055490	rs17374415	T	C	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	103060309	rs617059	A	G	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	103060671	rs12577323	A	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	103062371	rs146014868	T	TTG	1608.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr11	103074349	rs631712	C	T	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.68;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	103074639	rs613978	C	A	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	103082558	rs17394217	A	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	103086399	rs78873690	G	GTA	1411.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	103090518	rs12574017	G	A	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	103091237	rs636510	A	G	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	103091546	rs670464	G	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	103092945	rs654061	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	103092968	rs669940	C	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	103093560	rs76754213	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	103101903	rs11225611	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.82;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	103101918	rs61896694	A	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.66;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	103104669	rs11823725	A	G	277.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	103104930	rs1784259	C	A	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	103114694	rs140939541	ATATT	A	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	103123938	rs11820029	A	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	103123999	rs648387	G	T	2121.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.616;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.57;ReadPosRankSum=0.298;SOR=0.326;set=HC	GT:AD:AF:DP	1/1:2,88:0.98:90
chr11	103124135	rs11225634	T	G	11113.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr11	103126996	rs959890	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	103128510	rs650238	C	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	103151034	rs7103616	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	103152919	rs12574626	G	A	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	103192039	rs313407	T	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	103229027	rs2566913	T	C	7175.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	103229110	rs2671333	G	A	11328.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr11	103229173	rs2514408	A	C	7868.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	103229188	rs2512128	G	C	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	103229238	rs2512129	G	A	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	103780455	rs10791649	A	G	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	103780610	rs4754997	C	T	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	103780695	rs4754998	G	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	103814453	rs78383143	G	A	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	103818344	rs11226083	G	C	8310.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	103818395	rs35045740	T	C	7716.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	104757836	rs5794352	T	TA	326.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	104758035	rs484438	G	A	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=25.26;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	104758111	rs147443677	G	GA	171.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.230;QD=13.19;ReadPosRankSum=-0.230;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr11	104761013	rs635846	T	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.49;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	104761100	rs513131	T	C	7311.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	104761206	rs647039	C	T	7437.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	104761271	rs693506	A	C	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr11	104762228	rs544216	G	A	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	104763117	rs497116	G	A	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	104763716	rs617983	A	G	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	104768000	rs693001	G	A	12413.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,483:1.00:483
chr11	104768098	rs555367	T	C	6166.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	104768909	rs650940	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	104819327	rs9507	T	C	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	104819542	rs5794358	G	GAAAC,GAAACAGAC	2931.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=69;set=Intersection	GT:AF:DP	1/1:1.00:64
chr11	104819544	.	GAG	CAC	1401	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=17;MQ=60.47;NF=12;NR=24;PP=1401;QD=40.4018854128;SC=CACACAGAGAGAGACACACAC;SbPval=0.81;Source=Platypus;TC=46;TCF=19;TCR=27;TR=36;WE=104819554;WS=104819530;set=Platypus	GT:AD:AF:DP	1/1:10,36:0.78:46
chr11	104819544	rs33955446	G	GACAC	2762.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.30;QD=43.17;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	104819546	rs5004914	G	C	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=46.00;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	104820163	rs649739	A	C	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.32;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	104839222	rs658560	A	G	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	104866461	rs540819	A	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	104869708	rs523104	G	C	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	104872981	rs544211	C	T	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	104896375	rs2509648	G	T	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	104915444	rs473394	C	A	4452.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	105481597	rs55973528	CT	C	116.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.34;ReadPosRankSum=1.834;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr11	105782501	rs60005308	A	AATATAT	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.000;QD=26.67;ReadPosRankSum=-0.140;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	105836923	rs632549	G	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	105842916	rs559190	C	T	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	105844923	rs509512	C	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	105929469	.	G	GT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.332;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr11	106408031	rs11279851	TCAAATG	T	13646.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=44.89;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	106408071	rs1791468	C	T	7408.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.317;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=3.070;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.117;QD=25.37;ReadPosRankSum=-1.561;SOR=0.278;set=HC	GT:AD:AF:DP	1/1:1,291:1.00:292
chr11	106408212	rs2852371	A	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	106697172	rs61678754	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	106807443	rs11331245	AT	A	3400.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:21,210:0.91:231
chr11	106849520	rs10890630	T	C	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	107197536	rs630782	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	107207441	.	T	TA	28	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5004;HP=12;HapScore=2;MGOF=7;MMLQ=23;MQ=60.0;NF=0;NR=3;PP=28;QD=11.3333333333;SC=TCTGAACATCTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=3;WE=107207449;WS=107207431;set=Platypus	GT:AD:AF:DP	1/0:4,3:0.43:7
chr11	107216272	.	G	GA	2362.73	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	107216388	rs474364	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	107286893	rs11439588	T	TG	1355.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.74;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	107313608	rs144259680	G	GAGGAAGGA	1164.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.29;QD=44.80;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	107381533	rs655009	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	107381765	rs654093	G	A	5801.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	107402995	rs589788	A	T	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	107403202	rs5794554	TAG	T	2831.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	107420530	rs645056	A	G	13327.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,521:1.00:521
chr11	107422434	rs1269387	T	A	188.94	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=37.79;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	107422437	rs60431822	T	A	188.94	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=37.79;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	107422440	rs71488261	T	A	188.94	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=37.79;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	107462878	rs542650	A	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	107462895	rs4085361	G	A	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	107462977	rs5794560	G	GT	242.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	107578721	rs583362	C	G	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	107643102	rs28695914	T	A	242.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr11	107643289	rs60511673	T	G	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	107646894	rs34492014	C	CA	430.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=11.63;ReadPosRankSum=2.806;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr11	107729205	rs11603925	C	G	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	107729561	rs3741065	T	C	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	107925557	rs2271853	T	C	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	107943260	rs113786799	TAGTG	T	1749.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;MQ=60.24;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	107968520	rs73000527	T	A	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	107969300	.	GTT	G	218.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.775;QD=8.42;ReadPosRankSum=0.000;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr11	108012510	rs34420529	A	AAAGT	398.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	108014684	rs374107553	AC	A	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.583;QD=3.95;ReadPosRankSum=-2.786;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr11	108043988	rs2070661	C	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	108059000	rs3781869	T	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.95;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	108061379	rs659584	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	108064935	rs11212546	A	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	108068954	rs683312	T	C	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	108079315	rs34033921	T	TA	265.75	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr11	108093208	rs228589	A	T	7770.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	108114661	.	A	AT	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.097;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr11	108121410	rs34325032	C	CT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.313;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr11	108129657	rs672655	A	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	108137775	rs642496	T	A	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	108141955	rs373881770	CT	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.771;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:59,27:0.31:86
chr11	108143182	rs664677	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	108150207	rs1799757	CT	C	4181.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.05;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	108151707	rs3218681	T	TA	1294.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.14;QD=28.77;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	108175462	rs1801516	G	A	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	108183167	rs659243	A	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	108188266	rs58978479	AT	A	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.789;QD=1.05;ReadPosRankSum=-2.166;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:105,32:0.23:137
chr11	108188342	rs376739319	TTATATA	T	45.52	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	108196712	rs3212322	CATT	C	687.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	108218196	rs227075	T	C	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	108224697	rs179108	G	A	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	108225483	rs664982	C	T	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	108225661	rs664143	A	G	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	108253645	rs78172743	G	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	108256837	rs113995	A	T	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	108352160	rs3901850	C	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	108380335	rs1943382	T	C	13088.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr11	108549186	.	TA	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.771;QD=0.77;ReadPosRankSum=-0.094;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr11	108723102	rs2553755	T	C	141.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	109964007	rs7116424	A	G	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	109964079	rs7116552	C	A	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	109964089	rs11395531	T	TG	2621.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	109964257	rs7116683	A	G	473.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.186;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.388;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.74;ReadPosRankSum=1.790;SOR=0.626;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr11	110023628	rs665013	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	110033860	rs11213287	T	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	110050632	rs191613836	T	C	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=9.22;ReadPosRankSum=0.791;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:29,57:0.66:86
chr11	110128925	.	C	CA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-1.116;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr11	110306748	rs35520653	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.243;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr11	110452999	rs2008772	C	A	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.13;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	110453009	rs4079590	G	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.55;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	110453250	rs4142632	C	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	110582310	rs2305289	T	C	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr11	110697305	rs120434	C	G	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr11	110697444	rs120436	G	A	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	111152263	rs5794734	ACT	A	2674.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=41.15;SOR=1.539;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	111156836	rs3087967	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	111167206	rs5794737	CA	C	194.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-2.245;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:4,21:0.84:25
chr11	111179054	rs3087587	A	G	11659.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr11	111230529	rs4938496	A	G	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	111324146	rs61896867	A	C	12422.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.976;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=-0.809;SOR=0.281;set=HC	GT:AD:AF:DP	1/1:1,490:1.00:491
chr11	111325118	.	A	G	5606.77	.	AC=2;AF=1.00;AN=2;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	111326284	rs7925584	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	111327213	rs11213913	G	A	14251.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr11	111368047	rs489078	G	T	5446.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	111383789	rs11606481	C	T	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	111383846	rs2187473	C	T	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	111420364	rs634679	A	G	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	111422217	rs663763	C	T	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	111487106	rs571462	C	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	111625566	rs3737445	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	111626314	rs72173499	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=1.815;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr11	111637117	.	T	TCCCGCCCCGCGCCCAGGCCCCGCCCCGCGCCCAGGCCCCGCCCCGCGCCCAGGC	3262.73	.	AC=2;AF=1.00;AN=2;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=50.98;SOR=4.943;set=HC	GT:AD:AF:DP	1/1:1,63:0.98:64
chr11	111659476	rs2554996	C	A	116.10	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	111742145	rs10708475	CG	C	10643.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	111749349	rs611010	A	T	9168.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr11	111780104	rs68187136	TA	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=2.165;QD=1.25;ReadPosRankSum=-1.210;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr11	111848361	rs11364849	AG	A	3064.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	111853106	rs11455434	G	GC	8752.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.15;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	111899144	.	CAAAAAAAA	C,CA	1138.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.67;SOR=1.863;set=HC	GT:AD:AF:DP	1/2:0,19,9:0.68,0.32:28
chr11	111915765	rs11455845	C	CA,CAA	2101.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.432;QD=17.66;ReadPosRankSum=-1.797;SOR=0.680;set=HC	GT:AD:AF:DP	1/2:10,70,39:0.59,0.33:119
chr11	111916001	rs11335731	AG	A	6147.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	111916411	.	C	CA	40	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5634;HP=15;HapScore=2;MGOF=6;MMLQ=25;MQ=56.54;NF=1;NR=2;PP=40;QD=14.3333333333;SC=GACTCCATCTCAAAAAAAAAA;SbPval=0.48;Source=Platypus;TC=5;TCF=1;TCR=4;TR=3;WE=111916419;WS=111916404;set=Platypus	GT:AD:AF:DP	1/0:2,3:0.60:5
chr11	111941959	rs1425917	G	A	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	111956989	rs14396	C	A	7507.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	111957143	rs487201	T	C	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.088;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	111963860	rs592626	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.19;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	112041128	rs149903853	TTTTGTCCTG	T	5328.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	112064431	rs7105056	T	C	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	112065434	rs10891338	T	C	10384.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	112065483	rs7123686	A	C	7743.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	112071570	rs7948124	AA	TT	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	112072930	rs4935984	G	A	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	112072992	rs376091859	TTC	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.037;QD=2.29;ReadPosRankSum=-2.689;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr11	112087124	rs7938116	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	112088499	rs2217401	A	C	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	112088766	rs2455	G	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	112101499	rs76465815	T	A	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	112104245	rs59731976	T	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	112832307	rs11381910	G	GA	18834.73	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr11	112832339	rs11284059	GC	G	15320.73	.	AC=2;AF=1.00;AN=2;DB;DP=373;MQ=59.87;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr11	112832353	rs7105734	T	C	14265.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=46.02;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	112832358	rs6589347	T	C	13420.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=45.49;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr11	112832391	.	AT	A	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=4.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.783;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:104,29:0.22:133
chr11	112984037	rs1245087	G	A	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	113111501	rs2303377	T	C	21277.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,821:1.00:821
chr11	113113515	rs635596	G	A	12018.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr11	113186776	rs2236709	G	A	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	113195595	rs948178	A	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	113200709	rs2303380	G	A	5127.85	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:29,222:0.88:251
chr11	113209428	rs10891536	C	G	7752.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	113211370	rs10891537	T	G	9131.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr11	113230773	.	C	CTTGTTTTGTTTTGTTTTGTT	766.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	113233059	rs2298490	G	A	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	113234679	rs719802	T	C	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	113235419	rs2298489	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	113239082	rs10891540	G	A	28707.77	.	AC=2;AF=1.00;AN=2;DB;DP=1126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,1116:1.00:1116
chr11	113264272	rs17115439	T	C	10472.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr11	113264470	rs4938013	A	C	7941.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	113264511	rs11214596	C	G	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	113265292	rs10891546	T	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	113266702	rs11214598	T	C	9226.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	113268059	rs11604671	G	A	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	113270015	rs4938016	G	C	20434.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr11	113270160	rs2734849	A	G	12537.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr11	113270374	rs2734848	C	T	10263.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr11	113271065	rs2734847	T	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	113281397	rs6276	C	T	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	113283459	rs6277	G	A	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	113283477	rs6275	A	G	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	113285299	rs2511521	G	A	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	113287511	rs35352421	G	T	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.476;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	113294976	rs11608185	T	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	113294998	rs12808482	T	A	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	113295289	.	C	T	19811.77	.	AC=2;AF=1.00;AN=2;DP=782;set=Intersection	GT:AD:AF:DP	1/1:2,765:1.00:767
chr11	113561054	rs7110736	A	G	22539.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,504:1.00:504
chr11	113561057	rs7110738	A	G	22606.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,507:1.00:507
chr11	113563688	rs11604602	A	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	113566327	rs45503699	C	A	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	113569575	rs10891587	T	G	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	113569927	rs72103801	CTGTCTG	C	536.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.82;QD=41.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	113570208	rs73568808	C	T	11818.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr11	113570405	rs4936280	T	C	13112.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,505:1.00:505
chr11	113570490	rs3802856	T	C	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	113570852	rs3802854	C	T	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr11	113576932	rs7926267	A	G	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	113609854	rs4351850	T	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	113618470	rs2459977	T	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	113618968	rs2513584	G	C	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	113631413	rs60170555	TA	T	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=1.154;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:109,37:0.25:146
chr11	113670052	rs2459971	T	A	11941.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr11	113678924	rs2513582	G	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	113679119	rs2465647	C	T	7810.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	113680018	rs2513581	G	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	113706122	rs10789965	G	A	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	113775653	rs72466468	G	A	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	113802601	rs1176746	A	G	21028.77	.	AC=2;AF=1.00;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	1/1:4,840:1.00:844
chr11	113803028	rs1176744	A	C	9926.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr11	113803887	rs2276307	A	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	113846006	rs1062613	T	C	7129.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	113848184	rs4020460	G	GCT	6177.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	113848273	rs1985242	A	T	9066.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr11	113856681	rs10160548	G	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	114393652	rs10891692	C	T	3553.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.132;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=7.335;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.64;ReadPosRankSum=1.540;SOR=2.998;set=HC	GT:AD:AF:DP	1/1:1,156:0.99:157
chr11	114398627	rs34542949	C	CA	5813.73	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:18,290:0.94:308
chr11	114401577	rs524911	T	C	19222.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.63;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,750:1.00:750
chr11	114421674	rs75026329	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-1.336;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:38,6:0.14:44
chr11	114421683	rs79413019	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.054;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:49,6:0.11:55
chr11	114421698	rs75909356	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.816;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:73,8:0.10:81
chr11	114421705	rs78231204	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.354;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:83,10:0.11:93
chr11	114421711	rs77069178	C	T	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.794;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:101,16:0.14:117
chr11	114421713	rs112529011	GT	G	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=7.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.304;SOR=1.546;set=HC	GT:AD:AF:DP	0/1:103,18:0.15:121
chr11	114421721	rs78612878	G	A	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-1.626;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:123,25:0.17:148
chr11	114421747	rs78105386	G	A	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-1.217;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:159,37:0.19:196
chr11	114421754	rs73016111	G	A	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-1.745;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:167,43:0.20:210
chr11	114421768	rs75860289	A	T	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.113;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=4.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=-0.715;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:186,50:0.21:236
chr11	114421769	rs76481835	C	G	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.796;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=4.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=-0.536;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:186,50:0.21:236
chr11	114421773	rs74572030	A	G	1647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=2.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.118;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:188,51:0.21:239
chr11	114421789	rs113431368	A	AC	1960.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:196,57:0.23:253
chr11	114421799	rs79701489	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:208,64:0.24:272
chr11	114421817	rs73568242	G	T	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:202,69:0.25:271
chr11	114421857	rs78453693	T	C	3801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.954;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.414;QD=11.92;ReadPosRankSum=-0.223;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:212,107:0.34:319
chr11	114421861	rs76118887	G	A	3833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.385;QD=12.13;ReadPosRankSum=-0.401;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:207,109:0.34:316
chr11	114421895	rs78257939	G	A	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:235,136:0.37:371
chr11	114421909	rs79082937	T	C	4603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.345;QD=13.08;ReadPosRankSum=0.102;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:226,126:0.36:352
chr11	114421912	rs78658939	A	G	4581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.345;QD=13.13;ReadPosRankSum=0.277;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:224,125:0.36:349
chr11	114421927	rs78842965	G	A	2246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.359;QD=6.79;ReadPosRankSum=0.170;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:214,117:0.35:331
chr11	114421962	rs75409523	G	A	2569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=0.083;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:162,76:0.32:238
chr11	114421967	rs79109814	A	G	2525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=-0.261;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:149,71:0.32:220
chr11	114422003	rs73568250	A	C	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,41:0.36:113
chr11	114422016	rs76270589	T	A	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.023;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:57,20:0.26:77
chr11	114422025	rs75158214	C	A	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=1.132;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr11	114422029	rs78778953	T	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=1.520;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr11	114422036	rs77481744	C	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.337;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr11	114422052	rs10790022	G	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr11	114422068	rs76698432	C	T	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.27;ReadPosRankSum=-1.426;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr11	114422068	.	CTA	TTC	139	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=2;MGOF=140;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=139;QD=48.1169687156;SC=TTTCCCTCTGCTAACTAACAA;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=4;WE=114422078;WS=114422058;set=Platypus	GT:AD:AF:DP	0/1:4,4:0.50:8
chr11	114422070	rs75429280	A	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.27;ReadPosRankSum=-1.426;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr11	114441943	rs10891705	G	A	7076.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	114442103	rs550897	A	G	7296.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	114442265	rs481080	G	A	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	114550334	rs1612325	A	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	114569054	rs1712838	A	G	16428.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:1,640:1.00:641
chr11	115049180	rs17304149	C	T	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	115049203	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.315;QD=2.09;ReadPosRankSum=-0.635;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr11	115061533	rs4936322	T	C	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chr11	115102224	rs11607928	A	G	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	116628057	rs61905112	G	A	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	116628396	rs143811287	C	T	4587.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.34;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	116628401	rs2075295	T	C	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.00;SOR=1.200;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	116629734	rs67735092	T	TAA	1427.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.00;ReadPosRankSum=-0.214;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:4,64:0.94:68
chr11	116631707	rs3825041	T	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	116633825	rs918144	C	T	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	116633862	rs11820589	G	A	7706.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	116640772	rs34855544	C	CAA	1217.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.622;QD=17.39;ReadPosRankSum=1.133;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:13,57:0.81:70
chr11	116652728	.	C	CA	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.071;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr11	116654435	rs603446	C	T	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	116661826	rs2072560	T	C	16392.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr11	116662579	rs651821	C	T	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	116691634	rs5110	C	A	6904.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chr11	116692334	rs5104	C	T	15207.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr11	116692694	rs5100	G	A	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	116693464	rs5092	C	T	9422.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr11	116701153	rs2070668	T	G	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	116701535	rs4520	T	C	12318.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,476:1.00:476
chr11	116703640	rs5128	G	C	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	116703671	rs4225	G	T	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	116707684	rs2070665	A	G	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	116708020	rs5070	A	G	8241.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr11	116720089	rs2289893	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	116732512	rs2075292	G	T	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	116732856	rs484646	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	116734545	rs11216164	G	A	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	116744219	rs200802456	G	A	13126.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr11	116824884	rs511676	T	G	6064.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	117015195	rs2735183	C	T	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	117030581	rs1871757	T	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	117030624	rs35139041	AT	A	1525.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:5,86:0.95:91
chr11	117032125	rs3736120	G	T	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	117034388	rs3057863	CAAAAAA	C	3223.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.93;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:1,84:0.99:85
chr11	117034619	rs7122944	G	T	7371.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr11	117034729	rs10790175	T	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	117042238	rs10750103	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	117042254	.	GA	G	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=5.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=1.295;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr11	117042377	rs4936367	G	A	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	117052069	rs35248926	GTCTCT	G	8564.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	117053165	rs7946257	A	G	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	117059347	rs90192	C	T	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	117059552	rs474339	G	A	15462.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=0.027;SOR=0.295;set=HC	GT:AD:AF:DP	1/1:1,604:1.00:605
chr11	117064693	rs521171	C	G	9539.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	117078338	rs199953984	A	T	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=47.73;MQRankSum=-7.999;QD=7.26;ReadPosRankSum=-0.784;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:70,65:0.48:135
chr11	117078378	rs2269396	C	T	3148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.390;MLEAC=1;MLEAF=0.500;MQ=49.62;MQRankSum=-3.903;QD=9.10;ReadPosRankSum=1.153;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:180,166:0.48:346
chr11	117078604	rs192640086	C	T	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.68;MQRankSum=-5.282;QD=15.17;ReadPosRankSum=-0.892;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr11	117160347	rs539765	A	G	8872.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,354:0.99:356
chr11	117241760	rs2305826	T	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	117251143	rs2305828	A	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	117251521	rs2061293	G	C	218.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	117252489	rs897836	T	C	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:4,128:0.97:132
chr11	117258198	rs501776	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	117266312	rs2305830	C	G	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	117266754	rs693147	A	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	117267884	rs573455	A	G	12616.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr11	117282800	rs522885	G	T	26320.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.536;ClippingRankSum=0.000;DB;DP=1000;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.64;ReadPosRankSum=-0.239;SOR=0.248;set=HC	GT:AD:AF:DP	1/1:1,987:1.00:988
chr11	117299015	rs2925768	T	C	2660.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=0.181;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:2,107:0.98:109
chr11	117303858	rs11216382	T	C	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	117306291	rs661789	G	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr11	117309581	rs61905269	G	A	16852.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.540;ClippingRankSum=0.000;DB;DP=683;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.077;QD=25.00;ReadPosRankSum=-0.676;SOR=0.244;set=HC	GT:AD:AF:DP	1/1:1,673:1.00:674
chr11	117332343	rs2298766	C	T	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.11;SOR=2.331;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	117332352	rs588048	A	G	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.66;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	117335722	rs538847	T	C	7896.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	117395497	rs55642294	C	A	3962.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.130;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=1.046;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:1,158:0.99:159
chr11	117580254	rs2508559	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	117580356	rs605500	C	T	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	117580509	rs655086	A	G	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	117580585	rs604245	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	117693255	rs529623	T	C	9287.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,357:1.00:357
chr11	117698762	rs7117314	G	A	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	117709028	rs516655	G	A	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	117711232	rs496164	A	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	117712887	rs473057	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	117713653	rs149530999	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-0.406;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:147,31:0.17:178
chr11	117772787	rs3839950	GCACA	G,GCA	791.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.32;ReadPosRankSum=1.917;SOR=0.749;set=HC	GT:AD:AF:DP	1/2:1,9,17:0.33,0.63:27
chr11	117773110	rs494457	G	C	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	117774394	rs59590191	A	G	12725.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	117776526	rs3802872	A	G	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	117781435	rs2155194	A	G	6626.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	117784310	rs199970429	C	CTG	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.55;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	117784313	rs201070052	AC	A	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	117784714	rs11216618	T	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	117789312	rs201746372	CGGGCTGGAGATGCCT	C	5004.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	117790474	.	G	C	4531.77	.	AC=2;AF=1.00;AN=2;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	117790658	rs10790220	C	G	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	117790674	rs12418028	A	G	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr11	117863829	rs2508450	T	C	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	117864047	rs2256111	A	G	9775.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr11	117869670	rs2229113	A	G	9512.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	117965530	rs2276122	A	G	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	117982495	rs1941635	T	G	15446.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:1,597:1.00:598
chr11	117986152	rs7925897	A	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	117988082	rs642215	T	C	10190.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr11	117988223	rs643014	G	A	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	117996119	rs7944738	C	T	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	118011776	rs668468	G	A	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	118011805	rs644287	C	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	118016068	rs1793137	C	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	118037564	rs8192614	G	A	6995.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	118037813	rs8192613	G	T	9486.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr11	118047333	.	AAG	A	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.57;ReadPosRankSum=-1.440;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr11	118068752	rs2298831	T	C	10643.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr11	118074117	rs1793173	A	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	118074337	rs1793174	A	G	7475.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	118083664	rs1715429	A	G	11870.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr11	118100699	rs3062199	CAT	C	11279.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	118107805	rs1793140	A	G	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	118108003	rs1793141	G	A	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	118110977	rs2853006	T	C	12147.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr11	118175540	rs2231441	A	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	118178007	rs1126924	C	T	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	118179197	rs1599810	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	118182801	rs1945764	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	118183733	rs28423005	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	118185140	rs2298821	T	C	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	118186354	rs193922618	G	GAATC	3542.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	118209960	rs2276424	A	C	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,95:0.99:96
chr11	118210106	rs2276423	G	C	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	118210424	.	T	TAC,TACAC	5512.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DP=414;ExcessHet=3.0103;FS=9.722;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;MQRankSum=0.000;QD=18.62;ReadPosRankSum=-0.946;SOR=1.682;set=HC	GT:AD:AF:DP	1/2:32,71,193:0.24,0.65:296
chr11	118215075	rs150376137	AGGCT	A	2065.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	118221474	rs1561966	G	A	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	118240332	rs11216860	T	C	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=24.61;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	118240361	.	CT	C	124.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.722;QD=5.68;ReadPosRankSum=-0.454;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr11	118243700	rs34104337	TA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-0.269;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr11	118247264	.	CT	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=0.057;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr11	118255662	rs370025001	TAA	T	664.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.488;QD=6.45;ReadPosRankSum=1.391;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:60,43:0.42:103
chr11	118353037	rs59281381	G	GT	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.904;QD=3.39;ReadPosRankSum=-0.916;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:77,39:0.34:116
chr11	118359161	rs572126	G	A	138.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	118362414	rs562780	T	C	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	118403205	rs7933243	T	G	11144.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr11	118405343	rs512849	G	A	15317.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr11	118422385	.	C	CA	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-0.439;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr11	118443063	rs375845726	GC	G	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=17.903;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.211;QD=4.48;ReadPosRankSum=0.354;SOR=1.424;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr11	118500963	rs680465	G	A	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	118505676	rs58507527	GT	G	6156.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	118518964	rs11314049	GC	G	528.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	118529017	rs6589669	T	G	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=25.57;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	118529044	rs11448549	C	CG	4826.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=43.88;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	118529069	rs6589670	G	C	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=45.58;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	118529078	rs6589671	G	C	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=45.84;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	118622744	rs6589689	G	A	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	118625609	rs580079	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	118626215	.	T	TA	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.251;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr11	118757056	.	G	GA	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=1.399;QD=7.27;ReadPosRankSum=0.149;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:20,34:0.63:54
chr11	118757201	rs3176908	C	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=24.84;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	118765267	rs598207	G	C	23386.77	.	AC=2;AF=1.00;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	1/1:0,884:1.00:884
chr11	118765283	rs665648	G	A	19776.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:0,746:1.00:746
chr11	118768466	rs35636302	C	CT	1786.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.176;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=4.875;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.699;QD=14.41;ReadPosRankSum=-0.306;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:23,101:0.81:124
chr11	118769442	rs7104819	A	G	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	118770321	rs11217083	A	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	118773904	.	CAG	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-0.093;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr11	118781601	rs11376918	C	CA	25330.73	.	AC=2;AF=1.00;AN=2;DB;DP=861;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=31.39;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,807:1.00:807
chr11	118781638	rs11376919	C	CG	14952.73	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	118781655	rs11376920	C	CG	12627.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	118828942	rs623500	A	G	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	118842745	rs36158515	A	AG	17104.73	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr11	118842780	.	A	AG	10096.73	.	AC=2;AF=1.00;AN=2;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	118868842	rs58467585	A	AG	465.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	118885668	.	TA	T	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=4.590;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.248;QD=6.53;ReadPosRankSum=-0.148;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:18,34:0.65:52
chr11	118898435	rs56966114	AC	A	20471.73	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr11	118915757	rs11363127	TG	T	6373.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	118915944	rs1043314	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	118919132	rs2276060	G	A	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	118919206	rs568922	T	C	7582.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	118920112	rs670192	A	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	118920453	rs673768	T	C	13422.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	118925341	rs538478	G	A	4736.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.116;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.67;ReadPosRankSum=1.120;SOR=0.245;set=HC	GT:AD:AF:DP	1/1:1,191:0.99:192
chr11	118926720	rs470679	A	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	118927013	rs57740718	T	TC	10421.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	118938880	rs584115	A	G	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=3.293;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	118938880	.	ATC	GTT	2147	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=4;NR=38;PP=2147;QD=52.3920922586;SC=AAGGAAGTCCATCTCCTAACT;SbPval=0.81;Source=Platypus;TC=44;TCF=6;TCR=38;TR=42;WE=118938890;WS=118938870;set=Platypus	GT:AD:AF:DP	1/1:2,42:0.95:44
chr11	118938882	rs670526	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=3.682;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	118939939	rs5795166	T	TC	4711.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	118947634	rs540261	C	T	18649.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:0,710:1.00:710
chr11	118955679	rs589925	C	T	25701.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=1015;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=-2.700;SOR=0.667;set=HC	GT:AD:AF:DP	1/1:5,982:0.99:987
chr11	118962230	rs1131488	G	T	10128.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:41,434:0.91:475
chr11	118967758	rs643788	T	C	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:9,189:0.95:198
chr11	118968959	rs10544271	TAG	T	834.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr11	118970875	rs10892330	T	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	118970878	rs603826	A	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.62;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	118971251	rs649870	A	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr11	118973112	rs3825060	AA	GC	16094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.928;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.43;ReadPosRankSum=1.375;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:41,389:0.90:430
chr11	118978411	rs7940073	G	C	686.79	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:3,30:0.91:33
chr11	118984287	rs4938630	A	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	118985151	rs595782	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	119003322	rs662069	C	A	22918.77	.	AC=2;AF=1.00;AN=2;DB;DP=902;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,888:1.00:888
chr11	119004009	rs672189	G	T	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.289;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	119004026	rs537153	C	T	1959.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;MQRankSum=5.167;QD=25.45;ReadPosRankSum=0.317;SOR=0.539;set=HC	GT:AD:AF:DP	1/1:1,76:0.99:77
chr11	119004686	rs658922	T	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	119005088	rs512703	C	T	17620.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr11	119005132	rs100803	C	T	11251.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr11	119028813	rs626776	C	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	119031841	rs11383101	G	GC	6346.73	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	119043500	rs644252	T	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	119043656	rs643423	C	T	10874.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr11	119043745	rs561830	C	T	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	119052826	rs4245191	C	A	10322.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr11	119054488	rs10790286	C	T	14595.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr11	119059404	rs1815811	G	A	11622.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr11	119063908	rs2301574	C	T	9410.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	119065484	rs60630529	A	AC	14192.73	.	AC=2;AF=1.00;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=33.55;SOR=1.350;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr11	119065709	rs10750139	G	C	18314.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr11	119144791	rs373788107	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-0.116;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr11	119145463	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.250;QD=0.21;ReadPosRankSum=1.329;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:170,31:0.15:201
chr11	119146659	rs2511854	G	C	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	119148573	rs2510152	G	T	9964.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.885;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=1.397;SOR=0.311;set=HC	GT:AD:AF:DP	1/1:1,391:1.00:392
chr11	119184106	.	AT	A	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.779;QD=1.82;ReadPosRankSum=-0.406;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:49,23:0.32:72
chr11	119216231	rs2510143	A	G	8681.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr11	119216279	rs36015759	G	A	8368.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	119252151	rs565296	C	T	22669.77	.	AC=2;AF=1.00;AN=2;DB;DP=873;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,869:1.00:869
chr11	119252199	rs670906	T	G	19204.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,750:1.00:750
chr11	119252448	rs7943722	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	119291403	rs3138093	T	C	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	119291445	rs3138092	T	C	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	119291688	rs3751026	A	G	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	119509625	rs1022080	C	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	119510644	rs7940667	A	C	15938.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr11	119548052	rs10892429	G	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	119584506	rs4245205	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	119879327	rs17245368	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	119984202	rs506127	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	119984535	rs519672	G	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	119986167	rs503559	T	C	14960.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr11	119987576	rs488222	C	T	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	119989107	rs10466595	C	G	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	119989123	rs10466596	G	T	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr11	119992839	.	A	AGTGTGT	4013.73	.	AC=2;AF=1.00;AN=2;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;QD=36.82;SOR=1.463;set=HC	GT:AD:AF:DP	1/1:5,104:0.95:109
chr11	119993897	rs66674912	CCT	C	30642.73	.	AC=2;AF=1.00;AN=2;DB;DP=728;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=44.03;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,696:1.00:696
chr11	119999191	rs569044	A	G	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	120007889	rs470645	G	T	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	120040442	rs2444240	T	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr11	120097498	rs873059	T	C	11299.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.576;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.22;ReadPosRankSum=-1.103;SOR=0.405;set=HC	GT:AD:AF:DP	1/1:1,430:1.00:431
chr11	120099658	rs2508489	A	G	16938.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.35;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr11	120099679	rs2508490	G	A	17980.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.41;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr11	120107411	rs882856	G	A	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	120175749	rs7110845	A	G	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	120176310	rs12790634	G	A	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	120180298	rs185925330	GA	AG	13548.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	120292570	rs532006	T	A	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	120302456	rs117092333	G	A	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	120302729	rs55869319	C	T	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	120338040	rs2305011	A	G	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	120348128	.	G	GT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.441;QD=3.36;ReadPosRankSum=-1.246;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr11	120382409	rs7952113	T	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	120530973	rs6589829	C	T	9364.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	120690372	rs56326825	T	C	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	120707644	rs3934628	C	T	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	120776001	rs2156634	G	A	8281.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	120823528	rs10750178	A	G	6922.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	120837821	rs2276319	G	A	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	120856998	rs371012924	CGGGCGGGGCGGGAG	C	4534.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:3,186:0.98:189
chr11	121032978	rs526433	G	A	11189.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	121178302	rs1061332	A	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	121361015	rs2298525	G	A	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	121393212	rs630813	C	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	121403229	rs636588	T	C	11991.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr11	121403345	rs631232	T	C	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	121437819	rs1699107	C	G	7226.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	121445084	rs1792126	T	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	121447807	rs1790212	A	G	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	121456962	rs1699102	C	T	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	121460664	rs1625828	G	A	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	121475798	rs1784929	T	A	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	121483401	rs1010159	C	T	7624.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	121483651	rs1010158	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	121489416	rs1784933	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	121491782	rs1792120	G	A	6194.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	121493001	rs1614735	T	G	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	121493072	rs11454566	T	TA	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:5,47:0.90:52
chr11	122165766	rs532540	G	A	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	122172113	rs558962	T	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	122172318	rs615683	C	T	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.09;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	122172321	rs693194	T	C	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.32;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	122646967	rs12790613	G	A	6707.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	122650172	rs4935813	C	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	122709178	rs3134425	T	C	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	122722535	.	G	A	4228.77	.	AC=1;AF=0.500;AN=2;DP=463;set=Intersection	GT:AD:AF:DP	0/1:235,213:0.48:448
chr11	122724592	rs58811874	CT	C	2210.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	122738062	rs57365669	CAA	C	497.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=0.661;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr11	122738261	rs2272094	A	G	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	122738896	.	ATGTGTGTG	A	509.73	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	122775227	rs3107630	T	C	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	122795781	rs75347095	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	122928934	.	GA	G	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.015;QD=1.28;ReadPosRankSum=0.062;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:116,47:0.29:163
chr11	122945667	.	G	GT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-1.720;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr11	123154894	rs149387350	TTC	T	3425.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.100;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.217;QD=34.96;ReadPosRankSum=1.062;SOR=0.321;set=HC	GT:AD:AF:DP	1/1:1,97:0.99:98
chr11	123396674	rs35709687	G	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	123448305	rs76968140	G	A	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	123454935	rs75440287	C	T	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr11	123464637	rs1148101	G	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	123479150	rs1148088	G	A	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	123485444	rs732211	T	C	11348.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr11	123485561	rs1275061	T	C	8273.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	123489111	rs1275077	C	T	7064.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	123504673	rs1148111	C	G	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	123504959	rs1148110	C	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	123513506	rs1783901	C	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	123597804	rs679597	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	123599044	rs675172	T	C	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	123600475	rs1144507	A	G	8473.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	123624658	rs12364099	G	T	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	123676413	rs7952150	G	A	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	123676777	rs147835876	C	T	10405.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr11	123754844	rs10893099	T	C	8563.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	123754929	rs61366176	CA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.331;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr11	123886307	rs79057843	CA	TG	38721.77	.	AC=2;AF=1.00;AN=2;DB;DP=864;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=44.92;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,862:1.00:862
chr11	123886681	rs1893766	A	G	28100.77	.	AC=2;AF=1.00;AN=2;DB;DP=1099;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.58;QD=25.59;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,1098:1.00:1098
chr11	123886865	rs4084209	T	A	30039.77	.	AC=2;AF=1.00;AN=2;DB;DP=1168;set=Intersection	GT:AD:AF:DP	1/1:0,1159:1.00:1159
chr11	123886984	rs4936880	A	G	13511.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr11	123887164	rs4936881	A	C	11639.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr11	123887184	rs4936882	T	G	9592.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	123887314	rs517598	T	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	123893987	rs142337884	G	A	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.86;QD=28.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	123894119	rs12366219	A	G	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.15;QD=26.79;SOR=2.388;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	123894136	rs28499345	A	G	7698.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.72;MQRankSum=0.198;QD=27.30;ReadPosRankSum=0.087;SOR=0.652;set=HC	GT:AD:AF:DP	1/1:1,281:1.00:282
chr11	123909627	rs11219420	T	C	20982.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.96;QD=45.12;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,465:1.00:465
chr11	123909637	rs4936889	G	T	22161.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.29;QD=42.70;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr11	123909695	rs3894197	G	C	17089.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr11	124006972	rs2276054	G	T	4287.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr11	124006993	rs2276053	G	A	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	124015796	rs17690410	C	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	124015994	rs1056615	C	T	12359.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr11	124016366	rs2282505	C	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	124016740	rs9326269	A	T	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.96;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	124029037	rs4936895	G	A	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	124029075	rs4935866	G	A	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	124029292	rs1893011	G	A	10129.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:1,394:1.00:395
chr11	124029541	rs4936896	A	G	17940.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr11	124056377	rs2512228	T	C	7767.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	124056581	rs2466584	A	G	10021.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr11	124056732	rs2512227	T	G	5654.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr11	124056787	rs2512226	G	A	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	124180359	rs2510433	A	C	7921.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	124189306	rs2466620	G	A	11088.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr11	124189729	rs2512219	C	T	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	124190137	rs2466621	A	G	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	124266912	rs28398895	A	G	13845.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr11	124267177	rs61910862	T	C	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.20;QD=25.06;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	124267189	rs507335	T	C	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.79;QD=25.45;SOR=1.470;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	124293767	rs2188707	G	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	124294236	rs4057749	A	G	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	124294377	rs4057750	A	G	12608.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr11	124440362	rs55861866	C	G	8147.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	124440617	rs12792184	C	T	10985.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr11	124622193	rs111478435	T	TA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.129;QD=1.19;ReadPosRankSum=2.525;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:66,15:0.19:81
chr11	124624705	.	T	TA	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.644;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:100,31:0.24:131
chr11	124740410	rs3923890	A	T	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	124740691	rs7925879	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	124740980	rs35978862	C	T	6000.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	124747333	rs10790713	A	G	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	124747837	rs7933204	G	A	17910.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr11	124748196	rs111277969	G	A	14282.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr11	124750232	rs4366494	C	T	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	124750447	rs71859853	CCGGAGT	C	11711.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	124756406	rs7104934	G	A	12941.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr11	124757560	rs12418548	G	A	11133.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	124757758	rs57713193	T	C	8319.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=1.475;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	124757762	rs117896640	G	A	8177.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=1.434;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	124757815	rs59771534	A	T	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	124763647	rs7927528	A	G	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	124763989	rs7928168	G	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	124765168	rs12421354	C	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	124765229	rs12421677	G	C	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	124766128	rs4078313	A	G	18001.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr11	124766591	rs4078483	C	G	15420.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr11	124767067	rs59648931	T	C	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	124767876	rs117483938	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	124789755	rs3802904	T	C	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	124790922	rs10893303	C	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	124792173	rs10893304	C	G	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	124793682	rs10790715	T	C	10608.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr11	124856563	rs146292043	CTG	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.869;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:78,11:0.12:89
chr11	124856951	rs4608089	C	T	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	124861269	rs4936967	C	T	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	124910494	rs373190979	C	T	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	124946817	rs12276292	C	A	7971.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=1.285;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	124946823	rs12276295	C	T	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.69;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	124947149	rs12276567	G	A	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	124947396	rs55752830	A	G	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	124951467	rs4396301	C	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	124954282	rs948270	A	G	8106.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	124954652	rs4936976	G	C	10017.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr11	124955032	rs948268	T	C	12887.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr11	124955977	rs3808995	C	T	7853.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	124958122	rs3802808	A	G	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	124967774	rs2186888	G	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	124972208	rs14065	A	G	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	124972377	rs2155663	C	T	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	124972518	rs2155664	A	G	11916.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	124972522	rs2155665	T	C	11934.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	124972691	rs2155666	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	125003004	rs653552	A	G	4648.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	125298871	rs595849	A	G	17697.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,681:1.00:681
chr11	125323965	rs11220082	C	T	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	125326026	rs2241514	C	T	18788.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr11	125442503	rs369141998	CT	C	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=5.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.165;QD=1.86;ReadPosRankSum=-1.878;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:212,86:0.29:298
chr11	125443575	rs367941056	C	CTT	159.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	125445680	rs61493355	A	AT,ATT	1522.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.027;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.000;QD=12.38;ReadPosRankSum=-1.152;SOR=0.982;set=HC	GT:AD:AF:DP	1/2:28,59,36:0.48,0.29:123
chr11	125452300	rs55912941	A	AC	7335.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	125462162	rs573173	A	G	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr11	125467144	rs513209	C	A	2501.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.57;ReadPosRankSum=-2.270;SOR=0.555;set=HC	GT:AD:AF:DP	1/1:6,110:0.95:116
chr11	125482345	rs538232	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	125490765	.	AT	A	767.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.035;QD=4.31;ReadPosRankSum=1.294;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:82,96:0.54:178
chr11	125514573	rs521102	G	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	125525195	rs506504	A	G	7108.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	125616483	rs498803	G	T	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	125616502	rs2553829	T	A	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	125617317	rs496459	A	G	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	125617376	rs5795459	CT	C	944.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.74;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	125617606	rs537916	G	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	125617769	rs542285	C	T	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	125617881	rs541350	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	125647712	rs522690	T	C	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	125648216	rs517463	C	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	125648503	rs494361	G	A	11221.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,426:1.00:426
chr11	125659423	rs495869	A	C	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	125707761	rs11220236	A	C	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	125708198	rs10160391	C	T	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	125763567	rs10717222	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	125763746	rs3088241	C	G	13513.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr11	125766044	rs549990	C	A	10391.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr11	125766173	rs622756	A	C	5482.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	125766204	rs600761	G	C	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	125766207	rs471980	C	T	6613.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.61;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	125776216	rs34692223	A	ATT	936.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	125776259	rs681416	G	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	125778074	rs5795465	AT	A	1412.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:4,78:0.95:82
chr11	125780194	rs2272104	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	125788678	rs683155	T	C	7367.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr11	125810571	rs4937070	T	C	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	125810663	.	C	CT	310.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.291;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=1.345;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:3,20:0.87:23
chr11	125825412	rs73019364	A	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	125830970	rs684535	A	T	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr11	125831701	rs2276061	G	A	16317.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr11	125859783	rs1939985	T	C	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	125864972	rs138741332	AAAC	A	572.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=40.91;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	125867053	rs11220309	G	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	125873639	rs512761	G	T	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	125891162	rs35131477	A	G	6593.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	126075768	rs534804	G	A	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.319;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	126079333	rs1783955	G	A	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	126080611	rs149928866	CTTAT	C	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	126080757	rs608367	T	C	6611.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	126081336	rs587891	T	C	10447.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr11	126134698	rs638766	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	126139100	rs1786702	T	C	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	126139313	rs1786703	T	A	10784.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr11	126146244	rs56321210	C	T	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=27.69;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	126147697	rs667627	G	A	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	126161490	rs614700	T	C	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	126162862	rs7932766	C	T	21521.77	.	AC=2;AF=1.00;AN=2;DB;DP=849;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,832:1.00:832
chr11	126163124	rs609634	C	T	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	126163612	rs8177376	T	G	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	126163691	rs611953	A	G	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	126164349	rs625413	T	C	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	126176578	rs637462	G	A	8897.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	126201238	rs651983	G	T	9253.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:1,361:1.00:362
chr11	126201290	rs651922	A	G	13807.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr11	126201403	rs616360	T	C	5323.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	126201458	rs651034	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	126213341	rs240537	G	T	14384.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:1,541:1.00:542
chr11	126275960	rs10893506	T	C	8597.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	126277216	rs2230278	C	T	13608.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr11	126277570	rs11220480	A	G	12929.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr11	126278075	rs2230279	C	T	14956.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr11	126279365	rs1316361	A	T	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	126283785	rs2236653	C	T	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	126294817	rs948052	G	A	14720.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr11	126301481	rs3802817	T	A	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	126305279	rs4937132	C	G	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	126310082	rs878830	A	T	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	126310156	rs3740918	G	A	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	126315024	rs3802819	T	C	13924.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr11	126316610	rs1574534	C	T	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	126343135	rs12786235	A	C	8694.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.024;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	126873721	rs11377295	G	GC	9102.73	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=33.34;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	126968472	rs11220767	C	T	7256.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	128333503	rs2230004	T	C	13705.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,530:1.00:530
chr11	128350071	rs61909072	C	T	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	128355859	rs1122832	T	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.13;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	128391937	rs61907765	C	T	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	128396738	rs7117118	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	128443083	rs7935676	G	C	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	128443099	rs7935393	A	C	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	128638216	rs35044982	TG	T	9183.73	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr11	128642979	rs12418597	C	T	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	128652012	rs639336	G	T	5845.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=26.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	128652053	rs3216814	A	AG	3132.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	128772452	rs11221503	C	T	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	128773413	rs4937387	T	C	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	128781339	rs6590357	T	C	19735.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	1/1:0,761:1.00:761
chr11	128781978	rs7118824	T	G	19239.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr11	128782002	rs7118833	T	C	17181.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.94;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	128782012	rs7102584	C	G	15575.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr11	128786139	rs61176061	A	AGATGGATG	911.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=47.99;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	128786294	rs4937391	G	A	6221.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	128804789	rs2155548	C	A	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	128804955	rs2186833	C	T	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	128842243	rs77561606	A	T	319.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	128842251	rs76301868	G	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.89;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	128846547	rs665619	C	A	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	128846664	rs10893943	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	128855726	rs369790310	CGTGT	C	127.87	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	128868090	rs669678	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	128868239	rs670440	T	C	13033.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.33;ReadPosRankSum=-1.328;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:2,493:1.00:495
chr11	128932128	rs35714464	A	AG	9825.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	129061849	rs2511810	G	T	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	129727148	rs55962420	G	A	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	129743012	rs1650826	A	G	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	129746707	rs2229650	G	T	15445.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,602:1.00:602
chr11	129753945	rs56112470	G	A	11611.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr11	129754103	rs3214551	T	TG	6544.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.41;QD=39.67;SOR=1.470;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	129754644	rs1131972	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	129754668	rs2303662	T	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	129755669	rs1783914	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	129758327	rs1650823	G	A	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	129780608	rs73016839	C	T	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	129784966	rs73016844	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	129940806	rs112826009	A	G	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.274;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	129991652	rs71750553	TGAAGAG	T	2929.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=43.08;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	129998900	rs651935	T	C	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	130060612	rs858704	A	G	7021.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	130064223	rs610005	A	G	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	130064647	rs597661	G	A	14240.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,541:1.00:541
chr11	130064705	rs597576	A	G	6178.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.070;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	130064746	.	C	CGT	1138.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr11	130064747	rs7113578	A	G	1847.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:8,49:0.86:57
chr11	130066372	rs858713	G	A	13225.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=26.56;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,498:1.00:498
chr11	130066452	rs11368852	G	GC	33445.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=1191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.000;QD=29.94;ReadPosRankSum=1.191;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:8,1109:0.99:1117
chr11	130067892	rs858715	C	T	5409.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	130069790	rs613501	T	G	7927.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.335;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=6.750;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=1.357;SOR=0.418;set=HC	GT:AD:AF:DP	1/1:2,315:0.99:317
chr11	130104253	rs12789105	A	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	130332338	rs11604959	A	G	19249.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,730:1.00:730
chr11	130339312	rs731446	T	C	3000.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=-0.147;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:2,115:0.98:117
chr11	130749715	rs2282528	A	G	6331.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	130750642	rs2298566	A	C	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	130763772	rs3794143	C	T	6641.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.16;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	130775688	rs3198419	C	T	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	130775782	rs1865298	C	T	15003.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr11	130776524	rs4414223	T	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	130776613	rs4373936	A	G	5554.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	130776646	rs4586174	T	A	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	130776690	rs6590536	C	T	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	130776701	rs6590537	A	T	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	130777886	rs2276098	G	A	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	130780015	rs1781	C	T	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	130780225	rs681982	C	A	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	130780269	rs202209451	CCAAAA	C	533.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	130781475	rs3751038	C	G	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	130781675	rs12420822	C	T	14844.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	130781685	rs12420847	G	C	15068.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	130781767	rs12420834	C	A	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	130784396	rs62621284	G	A	7764.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	130784488	rs61734874	A	G	11295.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr11	130784616	rs3190345	T	C	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	130784647	rs1050081	G	C	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	130784694	rs61736758	C	T	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	130784707	rs61736752	C	T	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	130784754	rs3751037	C	G	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	130784971	rs3751036	C	G	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	130785205	rs3751035	G	A	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	130785304	rs3751034	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	131530083	rs2472253	G	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	131531000	rs2739287	T	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	131531015	rs2658857	T	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	131781634	rs11222836	G	A	8034.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	132177633	rs2305271	A	C	10995.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr11	132179950	rs71477755	CA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.473;QD=3.43;ReadPosRankSum=-0.179;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr11	132184394	rs730253	G	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	132200128	rs3837377	T	TA	4126.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	132205215	rs8894	A	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	132306153	rs1940024	T	C	9631.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr11	132306403	rs2298479	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	132812642	rs12575270	G	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	133788869	rs10791338	A	G	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	133788992	rs12800905	T	C	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	133789013	.	CG	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=26.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.478;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr11	133792021	rs596430	T	C	10040.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr11	133792644	rs34845616	G	A	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	133794599	rs329670	T	C	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	133801262	rs329671	G	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	133805585	rs329637	C	T	9089.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr11	133814191	rs595986	A	G	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	134018850	.	AAC	A	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=1.146;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:38,22:0.37:60
chr11	134054705	rs369433129	TAC	T	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.844;QD=3.03;ReadPosRankSum=-0.481;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr11	134072616	.	G	GA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.564;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr11	134105030	rs1259022	A	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	134151975	rs472287	G	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	134152030	rs10791352	G	A	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	134177275	rs2510356	C	T	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	134180695	rs526507	G	C	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	134181101	rs1144218	T	C	14771.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr11	134182135	rs751719	T	C	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	134182375	rs2509062	G	A	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	134182856	rs1144216	A	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	134183450	rs1144215	T	C	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	134184141	rs1144214	C	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	134188542	rs481252	T	C	6917.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	134188851	rs5795879	A	AT	1215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.866;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:28,86:0.75:114
chr11	134201864	rs3098651	T	C	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	134226244	rs61740182	G	A	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	176219	.	G	A	1153.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chr12	235022	rs12822449	C	T	9810.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr12	235126	rs112633842	G	GC	1339.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr12	235128	rs11608642	T	C	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,56:0.50:111
chr12	235142	rs11609616	A	G	1775.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.09;ReadPosRankSum=-3.339;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:45,48:0.52:93
chr12	235142	.	AG	GC	1898	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=4;HapScore=4;MGOF=17;MMLQ=23;MQ=60.0;NF=6;NR=19;PP=1898;QD=78.0587149945;SC=GGGGCTGTCGAGGGTACCAGG;SbPval=0.82;Source=Platypus;TC=59;TCF=19;TCR=40;TR=25;WE=235151;WS=235116;set=Platypus	GT:AD:AF:DP	1/0:34,25:0.42:59
chr12	235143	rs11610983	G	C	1775.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.725;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.95;ReadPosRankSum=-2.841;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:45,44:0.49:89
chr12	247923	rs75677829	A	G	8555.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr12	248155	rs55923022	C	T	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	248202	rs56204927	C	G	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	250130	rs12321262	T	C	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr12	250239	rs2291928	A	G	3998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=695;ExcessHet=3.0103;FS=7.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-0.049;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:447,238:0.35:685
chr12	271022	rs12579600	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr12	271373	rs4980805	A	G	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	274572	rs11061700	G	C	4558.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	284058	rs216230	T	C	29698.77	.	AC=2;AF=1.00;AN=2;DB;DP=1161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,1132:1.00:1132
chr12	300500	rs10128942	T	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	301843	rs646569	A	G	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	305254	rs533572	T	C	1427.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.406;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.655;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.62;ReadPosRankSum=-0.844;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:1,57:0.98:58
chr12	309753	rs7967868	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:36,47:0.57:83
chr12	310113	rs4980863	A	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	310901	rs216248	T	C	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	311816	rs216249	C	T	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	311949	rs216250	A	G	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	312200	rs216251	C	T	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	347068	rs2289957	T	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr12	351711	rs525797	T	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	405043	rs77854644	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr12	406292	rs2229351	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:86,61:0.41:147
chr12	416046	rs35042439	C	CT	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.625;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:48,22:0.31:70
chr12	418916	rs4980877	C	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr12	427165	rs11442012	C	CA	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=-0.174;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr12	427575	rs11062385	A	G	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:191,137:0.42:328
chr12	442620	rs4980885	C	T	4040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-1.245;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:327,226:0.41:553
chr12	461269	rs58266653	CAA	C	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.534;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=8.24;ReadPosRankSum=1.580;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr12	464254	rs3759371	T	C	2057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=1.276;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:85,101:0.54:186
chr12	495217	rs10774152	G	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	496392	rs201508413	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-1.946;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr12	496439	rs7965303	A	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=2.606;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	498267	rs3043226	CG	C	4793.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=4.895;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.422;QD=21.89;ReadPosRankSum=0.293;SOR=0.214;set=HC	GT:AD:AF:DP	1/1:14,205:0.94:219
chr12	537828	rs11062934	G	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	537841	rs35713455	T	TA	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	540994	rs7310504	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr12	550911	rs34054482	CT	C	2302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-1.436;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:58,201:0.78:259
chr12	661458	rs10588224	TACAC	T,TAC	1083.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.63;ReadPosRankSum=0.497;SOR=5.136;set=HC	GT:AD:AF:DP	1/2:2,16,26:0.36,0.59:44
chr12	662448	rs758790	T	C	4887.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:184,237:0.56:421
chr12	667910	rs12368256	A	G	3181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.64;ReadPosRankSum=-0.174;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:64,83:0.56:147
chr12	667915	rs61916654	C	T	3108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.53;ReadPosRankSum=0.666;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:60,78:0.57:138
chr12	668350	rs2072385	AC	CT	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr12	675441	rs4980836	T	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr12	719681	rs2535405	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	752327	rs6489690	C	A	17486.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:2,661:1.00:663
chr12	752998	rs9669247	G	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr12	772458	rs3782851	C	T	3248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.381;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-1.582;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:199,167:0.46:366
chr12	862641	rs3088353	T	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr12	862989	rs3168640	T	C	20178.77	.	AC=2;AF=1.00;AN=2;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,782:1.00:782
chr12	863517	rs3858703	G	A	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	936468	rs2158502	C	G	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	939302	rs10774466	A	G	5858.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	966208	rs2240284	G	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	970093	rs11286613	CT	C	836.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr12	974137	rs11441896	C	CA	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr12	974308	rs141823469	T	TC	9600.73	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:332,469:0.59:801
chr12	974355	rs11441897	T	TC	15568.73	.	AC=1;AF=0.500;AN=2;DB;DP=944;set=Intersection	GT:AD:AF:DP	0/1:423,511:0.55:934
chr12	974404	rs7300829	T	C	9112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=952;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.375;QD=9.65;ReadPosRankSum=0.373;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:485,459:0.49:944
chr12	987482	rs1012729	G	A	8761.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr12	987533	rs5795952	C	CT,CTT	1635.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.260;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.391;QD=14.48;ReadPosRankSum=1.039;SOR=1.135;set=HC	GT:AD:AF:DP	1/2:18,67,28:0.59,0.25:113
chr12	990912	rs956868	A	C	7414.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	993930	rs7300444	C	T	20947.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.821;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=1.066;SOR=0.350;set=HC	GT:AD:AF:DP	1/1:1,818:1.00:819
chr12	994487	rs7955371	G	C	11404.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr12	995291	rs11450919	G	GT	945.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	999638	rs17755373	C	T	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:203,178:0.47:381
chr12	1017197	rs4766334	C	T	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	1022679	rs6413436	A	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	1023218	rs4987207	G	T	3937.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:283,212:0.43:495
chr12	1035947	rs6489763	C	A	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	1040219	rs11571409	G	A	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	1041981	rs201398506	A	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.85;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	1041983	rs199628282	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	1041986	rs200633668	C	G	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	1041991	.	TAG	CGC	740.77	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.15;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	1041996	rs113084521	A	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.88;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	1042261	.	G	GA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=4.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.173;SOR=1.598;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr12	1221221	rs74679668	T	TAG	446.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	1290949	rs35973834	CA	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.375;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr12	1313732	rs7977526	T	C	10128.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr12	1372114	rs2286031	A	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	1480878	.	GC	AT	47	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5338;HP=1;HapScore=2;MGOF=7;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=47;QD=50.2339374311;SC=GGGGTGAATGGCGCTGTTGGC;SbPval=1.0;Source=Platypus;TC=4;TCF=3;TCR=1;TR=2;WE=1480887;WS=1480872;set=Platypus	GT:AD:AF:DP	1/0:2,2:0.50:4
chr12	1517234	rs1001785	G	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=0.888;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,31:0.66:47
chr12	1589821	rs7315267	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr12	1589868	rs111377772	T	TGAA	2053.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,53:0.51:103
chr12	1676039	rs12422360	C	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	1703322	.	A	AGCC	2777.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=2.375;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=0.099;QD=24.15;ReadPosRankSum=1.100;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:3,112:0.97:115
chr12	1748766	rs6489313	G	A	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	1748834	rs2270036	T	C	8861.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr12	1889823	rs767870	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr12	1889920	.	T	TA	461.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.48;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	1889921	rs2887630	T	A	503.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	1902766	rs2058111	T	G	12355.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr12	1904726	rs3078853	G	GAC	1694.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	1919543	rs2286377	C	T	5370.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	1937511	rs10437823	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	1943384	rs79174514	G	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr12	1950011	rs58188909	A	AC	16927.73	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr12	1953866	rs2286375	A	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr12	1955664	rs7137553	G	T	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.19;ReadPosRankSum=2.031;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:46,55:0.54:101
chr12	1955668	rs7138458	C	A	2164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.82;ReadPosRankSum=2.144;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:48,56:0.54:104
chr12	1955786	rs11836202	G	A	3798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=0.601;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:256,198:0.44:454
chr12	1955890	rs7137876	T	C	21255.77	.	AC=2;AF=1.00;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	1/1:0,845:1.00:845
chr12	1963359	rs4766425	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr12	1965369	rs2286372	G	A	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=0.361;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:125,94:0.43:219
chr12	1967676	rs2286371	G	A	5187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=0.202;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:382,285:0.43:667
chr12	1967947	rs2286369	C	G	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr12	1969262	rs10848582	T	C	5617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.191;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:220,277:0.56:497
chr12	1969435	rs2370057	G	C	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr12	1969505	rs56110511	G	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.301;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	1987313	rs140595785	T	G	47.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	1991971	rs55779143	A	G	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:102,104:0.50:206
chr12	1993337	rs2429184	T	C	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	1995042	rs10774003	A	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	1995403	rs10735005	T	C	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	2016550	rs112521420	A	ATTGTC	1041.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	2016811	rs146752695	CCTGGTGGGCGTGT	C	3856.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:134,106:0.44:240
chr12	2016938	rs113797488	AGCCTGGTGAGTAT	A	6723.73	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:192,175:0.48:367
chr12	2018987	rs34288687	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr12	2019322	rs8181786	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	2022411	rs1558142	T	C	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	2024316	rs758157	A	G	30760.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DB;DP=1225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=-2.392;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:4,1211:1.00:1215
chr12	2038978	rs79802812	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=0.802;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr12	2039022	rs66541354	G	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=2.887;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr12	2039155	rs200831723	GGGGAGGAGGAGGAAGAGA	G	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=0.247;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	2039690	rs2429172	A	G	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr12	2061874	rs145623669	G	C	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:129,85:0.40:214
chr12	2064529	rs150660202	A	G	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:63,78:0.55:141
chr12	2064733	rs139886104	T	C	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:88,102:0.54:190
chr12	2100324	rs11062046	A	C	2875.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:209,159:0.43:368
chr12	2102623	rs12813534	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr12	2113348	rs7298333	A	C	11240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=1422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=0.237;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:817,596:0.42:1413
chr12	2558298	rs1544515	G	A	6151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=2.353;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:165,160:0.49:325
chr12	2558298	.	GTT	ATC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=34;NR=62;PP=2944;QD=20;SC=ATCACTGTCTGTTTCTTTCCC;SbPval=0.56;Source=Platypus;TC=189;TCF=68;TCR=121;TR=96;WE=2558308;WS=2558288;set=Platypus	GT:AD:AF:DP	1/0:93,96:0.51:189
chr12	2558300	rs1544516	T	C	6151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.28;ReadPosRankSum=1.337;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:160,159:0.50:319
chr12	2602307	rs56412831	C	G	4792.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:193,238:0.55:431
chr12	2613521	rs1008832	A	G	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:73,50:0.41:123
chr12	2659044	rs34277236	TG	T	15186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.014;QD=16.78;ReadPosRankSum=0.992;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:458,447:0.49:905
chr12	2659082	rs11062272	G	T	12199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=1240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.399;QD=9.86;ReadPosRankSum=0.624;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:611,626:0.51:1237
chr12	2659622	rs12304811	G	A	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr12	2659848	rs10848675	T	C	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	2659942	rs79331677	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.647;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	2676683	rs2370602	C	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr12	2692186	rs3751254	T	G	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr12	2706720	rs215983	G	C	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:147,171:0.54:318
chr12	2743360	rs10713529	CT	C	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.922;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr12	2757756	rs2239127	T	C	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	2757769	rs2239128	T	C	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	2757782	rs2239129	C	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	2760708	rs216045	G	A	8092.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	2760970	rs1990322	G	A	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	2773855	rs7315556	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	2773862	rs4765702	T	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr12	2774668	rs2302728	C	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr12	2778272	rs35749666	G	GC	5907.73	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:173,198:0.53:371
chr12	2783476	rs7136355	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr12	2783517	rs11062308	G	A	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.614;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:57,70:0.55:127
chr12	2786115	rs12818148	C	G	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.146;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=0.408;SOR=1.527;set=HC	GT:AD:AF:DP	0/1:30,35:0.54:65
chr12	2787058	rs2302731	C	T	3918.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:165,189:0.53:354
chr12	2788879	rs1051375	G	A	12894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=1354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=1.289;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:701,638:0.48:1339
chr12	2789401	rs35692616	C	CA	1250.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr12	2789787	rs12299577	A	G	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.81;ReadPosRankSum=-1.811;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:28,37:0.57:65
chr12	2789789	rs12319450	C	G	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.50;ReadPosRankSum=-2.220;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:27,36:0.57:63
chr12	2791130	rs10848683	C	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=-1.107;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	2791130	.	CGA	TGG	454	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=23;MQ=60.0;NF=10;NR=1;PP=454;QD=46.1334431693;SC=AGGCACGTTCCGATGTGTGAG;SbPval=0.61;Source=Platypus;TC=24;TCF=22;TCR=2;TR=11;WE=2791140;WS=2791120;set=Platypus	GT:AD:AF:DP	0/1:13,11:0.46:24
chr12	2791132	rs10774053	A	G	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.704;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=-1.037;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr12	2791205	rs10774054	A	G	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	2795119	.	T	TG	807.73	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr12	2795255	rs2270373	C	T	2977.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:180,156:0.46:336
chr12	2851185	rs12319038	A	G	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	2851259	rs12319097	A	G	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	2851357	rs10774059	C	T	8055.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.13;QD=42.85;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	2851365	rs4765989	T	C	7712.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.23;QD=44.84;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	2876636	rs4313632	A	G	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:47,97:0.67:144
chr12	2906579	.	C	CT	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=2.144;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=2.11;ReadPosRankSum=3.064;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:64,23:0.26:87
chr12	2907087	rs41456246	G	A	10387.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr12	2937013	rs4765998	G	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	2968458	rs2215292	T	C	19766.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=781;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=0.063;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:2,775:1.00:777
chr12	2997058	.	C	CT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=2.243;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:66,26:0.28:92
chr12	3017102	rs11062412	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr12	3017219	rs10848733	A	G	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-1.056;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:143,104:0.42:247
chr12	3018675	rs11305670	AT	A	770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.143;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:93,78:0.46:171
chr12	3031358	rs2302283	T	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr12	3039319	rs10848747	A	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-0.492;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr12	3040029	rs10848749	C	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.339;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-0.390;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	3046677	rs116444325	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr12	3046965	.	CA	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.852;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr12	3047466	rs2074987	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr12	3049631	rs2302282	C	T	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:113,97:0.46:210
chr12	3127652	rs2159411	A	G	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	3128103	rs71534246	G	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr12	3128416	rs67719910	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr12	3130938	rs4759380	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr12	3131206	rs3741952	T	C	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.052;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:109,93:0.46:202
chr12	3131238	rs4759379	A	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr12	3149483	rs7294804	A	G	8800.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr12	3310335	rs740777	C	T	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-0.572;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:51,39:0.43:90
chr12	3310439	rs740776	C	T	4492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.469;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-1.208;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:198,227:0.53:425
chr12	3310482	rs740775	C	G	3689.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:176,190:0.52:366
chr12	3315433	rs2058243	A	G	11084.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr12	3409277	rs7306401	C	T	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr12	3490546	rs9804924	T	C	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,61:0.45:136
chr12	3490820	rs10848860	T	C	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr12	3600967	rs757609	T	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	3647766	rs3741938	C	T	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:104,117:0.53:221
chr12	3678745	rs3741936	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:83,31:0.27:114
chr12	3701390	rs3741935	C	T	13889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=1414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.661;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:691,716:0.51:1407
chr12	3702219	rs4765741	A	G	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr12	3724583	rs11062745	T	C	2465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-1.062;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:168,135:0.45:303
chr12	3736734	rs10848893	C	T	6407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.261;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:232,310:0.57:542
chr12	3736745	rs10848894	T	C	5917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=1.203;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:229,293:0.56:522
chr12	3736940	rs17836183	C	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr12	3749874	rs7138453	T	C	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:224,142:0.39:366
chr12	3749889	rs76779686	A	G	4745.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:144,229:0.61:373
chr12	3750070	rs4766151	T	C	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	3751046	rs7297853	T	C	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:239,203:0.46:442
chr12	3753975	rs7975304	T	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	3757548	rs887304	T	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	3757839	rs150013368	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr12	3765493	rs71534241	G	T	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.911;QD=8.42;ReadPosRankSum=-0.982;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:94,80:0.46:174
chr12	3782456	rs55825408	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	3782480	rs56040859	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	3782647	rs36030417	A	T	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	3782701	rs17697920	C	T	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	3782779	rs61907258	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	3787956	rs242019	A	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	3788145	rs242018	C	T	11724.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr12	3788188	rs3803135	C	T	13306.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr12	3788222	rs242017	G	A	11906.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:1,463:1.00:464
chr12	3789452	rs17836273	C	T	8096.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr12	3789562	rs61537702	GG	CA	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	3789607	rs17780600	T	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	3806147	rs9788233	T	C	7844.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:6,307:0.98:313
chr12	3923061	rs2231381	G	A	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr12	3924358	rs58512506	A	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr12	3924367	rs10848940	C	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=0.319;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr12	3938366	rs10491977	G	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	3948550	rs12319851	A	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,48:0.47:102
chr12	3948619	rs59836757	C	T	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:145,140:0.49:285
chr12	3948718	rs3809251	G	A	8104.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr12	3950977	rs7295047	T	C	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:154,147:0.49:301
chr12	3951309	rs3816506	A	G	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:178,112:0.39:290
chr12	3951557	rs3816503	G	T	3441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-0.780;QD=7.70;ReadPosRankSum=0.799;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:258,189:0.42:447
chr12	3982482	rs66847009	C	T	5056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.101;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:228,250:0.52:478
chr12	3982657	rs4766179	A	G	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	4430547	rs10774222	C	T	9136.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	4430561	rs11063080	C	G	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:96,144:0.60:240
chr12	4446116	rs7296163	T	C	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr12	4461485	rs7133330	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chr12	4537658	rs2970806	G	A	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	4554548	rs7358740	G	C	40666.77	.	AC=2;AF=1.00;AN=2;DB;DP=1601;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,1579:1.00:1579
chr12	4662195	rs61755425	T	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.14;ReadPosRankSum=0.066;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	4671429	rs34206253	G	T	17580.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,665:1.00:665
chr12	4671490	rs740059	G	A	15130.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.13;ReadPosRankSum=-1.391;SOR=0.245;set=HC	GT:AD:AF:DP	1/1:1,578:1.00:579
chr12	4677255	rs2240766	T	C	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,48:0.42:113
chr12	4682418	rs3815360	T	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr12	4697987	rs2041295	A	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	4697991	rs2041294	AT	GG	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	4700221	rs2302248	G	T	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	4705317	rs3741925	C	T	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-1.359;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:92,67:0.42:159
chr12	4708150	rs3741926	T	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr12	4708438	rs202029653	T	TTTG	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.378;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.789;QD=6.01;ReadPosRankSum=-1.263;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr12	4714008	rs2286576	T	G	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	4716572	rs997373	C	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr12	4725134	rs7301885	G	A	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	4735737	rs2072358	A	G	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:87,131:0.60:218
chr12	4735965	rs200178782	T	TC	5746.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.724;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=6.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.61;ReadPosRankSum=2.822;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:194,152:0.44:346
chr12	4735968	.	AGA	CAG	2934	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=27;MQ=59.94;NF=41;NR=26;PP=2934;QD=20;SC=TGGCATCTCCAGACTTGTCAT;SbPval=0.81;Source=Platypus;TC=150;TCF=81;TCR=69;TR=67;WE=4735978;WS=4735958;set=Platypus	GT:AD:AF:DP	0/1:83,67:0.45:150
chr12	4735969	rs67512580	GA	G	5787.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.254;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=6.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.17;ReadPosRankSum=3.041;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:205,153:0.43:358
chr12	4736495	rs1990312	C	T	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	4736569	rs12366671	A	G	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:120,118:0.50:238
chr12	4736631	rs11063265	A	G	10198.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr12	4736677	rs11063266	G	C	11730.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr12	4736690	rs10774251	A	G	12118.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr12	4737318	rs7960207	A	G	9157.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr12	4737459	rs2072356	C	T	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:126,147:0.54:273
chr12	4737715	rs2072355	C	T	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:130,168:0.56:298
chr12	4740515	rs11063270	A	T	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:214,94:0.31:308
chr12	4740588	rs11063271	G	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:117,47:0.29:164
chr12	4758188	rs714621	G	C	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:61,126:0.67:187
chr12	4762871	rs200108366	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.505;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr12	4763780	rs3217056	GCA	G	736.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr12	4768354	rs7972657	A	C	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	4768437	rs7958182	C	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	4768504	rs4147683	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.32;ReadPosRankSum=0.293;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	4771682	rs2267549	G	A	1454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=0.045;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:49,73:0.60:122
chr12	4779087	rs1009633	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	4791451	rs34076756	C	T	4166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=1.004;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:230,216:0.48:446
chr12	4854539	rs34073667	T	TC	1166.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	4959874	rs10774275	T	C	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.46;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	4959904	rs34855288	G	GA	2046.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.687;QD=7.81;ReadPosRankSum=1.470;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:154,108:0.41:262
chr12	4959987	rs10774276	C	T	8266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.751;QD=14.35;ReadPosRankSum=2.142;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:348,228:0.40:576
chr12	4959993	rs3168377	C	A	8227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.743;QD=14.82;ReadPosRankSum=2.167;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:334,221:0.40:555
chr12	4960023	rs14054	C	A	3490.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:266,192:0.42:458
chr12	4960089	rs700480	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:97,71:0.42:168
chr12	4960117	rs12336	T	C	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,35:0.44:80
chr12	5021228	rs1048500	T	C	19092.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.987;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=0.451;SOR=0.432;set=HC	GT:AD:AF:DP	1/1:3,739:1.00:742
chr12	5021348	rs2227910	G	C	10938.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr12	5021984	rs4766309	T	A	10419.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,407:1.00:407
chr12	5022041	rs4766310	G	A	7576.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.625;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=3.378;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=-0.659;SOR=0.502;set=HC	GT:AD:AF:DP	1/1:1,295:1.00:296
chr12	5154462	rs2359641	T	C	14982.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:2,579:1.00:581
chr12	5674754	rs2277398	G	A	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	5721962	rs3741837	A	G	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	5756795	rs444834	T	G	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:71,73:0.51:144
chr12	5756824	rs367978	C	T	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:107,123:0.53:230
chr12	5757029	rs367206	C	T	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr12	5848953	rs17195410	C	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:77,58:0.43:135
chr12	5848977	rs79853037	C	T	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:91,124:0.58:215
chr12	5849004	rs79278925	C	A	3391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=4.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=1.398;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:158,173:0.52:331
chr12	5961048	rs7485945	G	A	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr12	6030154	rs3825331	G	A	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:81,72:0.47:153
chr12	6030165	rs3825332	G	A	3104.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:97,92:0.49:189
chr12	6030302	rs3741902	T	C	4983.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:176,238:0.57:414
chr12	6030405	rs3741903	A	G	6047.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:331,313:0.49:644
chr12	6032129	rs12817045	A	G	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.11;ReadPosRankSum=1.028;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr12	6032138	rs12817050	A	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.09;ReadPosRankSum=0.336;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr12	6054277	rs6416321	G	A	5373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=2.143;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:361,279:0.44:640
chr12	6054395	rs6489680	A	G	14257.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr12	6055132	rs6489682	T	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	6060960	rs2270151	G	A	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:112,123:0.52:235
chr12	6061069	rs2270152	T	G	5278.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:270,270:0.50:540
chr12	6061491	rs2286646	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,55:0.50:109
chr12	6062853	rs3759320	C	T	3231.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:80,153:0.66:233
chr12	6062878	rs3759321	G	A	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:40,99:0.71:139
chr12	6078616	rs2270239	T	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:81,65:0.45:146
chr12	6085513	rs216855	A	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	6090825	rs216866	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	6091000	rs216867	A	G	12814.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr12	6091164	rs216868	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr12	6092567	rs138350612	G	GGATAGATAGATA,GGATAGATAGATAGATA	697.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;set=Intersection	GT:AF:DP	1/2:0.47,0.53:15
chr12	6092629	rs10535241	TGATA	T	149.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.31;ReadPosRankSum=-1.465;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	6094845	rs177702	G	A	7297.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	6105387	rs216902	G	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr12	6121078	rs216305	C	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	6127943	rs216310	A	G	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	6128443	rs216311	T	C	8985.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	6128984	rs216312	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	6143984	rs216321	T	C	13823.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:2,549:1.00:551
chr12	6144164	rs499648	T	C	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.92;SOR=1.758;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	6144169	rs669667	T	G	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=1.961;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	6145529	rs216325	G	A	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	6153386	rs71582893	C	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr12	6153514	rs1063857	A	G	15776.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:312,409:0.57:721
chr12	6153534	rs1063856	T	C	16582.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:341,454:0.57:795
chr12	6153659	rs216293	G	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:95,57:0.38:152
chr12	6153738	rs1558519	AC	GT	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	6153750	rs216294	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	6161963	rs10622633	G	GAGA	2050.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.877;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=7.433;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.096;QD=17.23;ReadPosRankSum=0.101;SOR=1.388;set=HC	GT:AD:AF:DP	0/1:64,55:0.46:119
chr12	6172202	rs1800378	T	C	4392.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:246,226:0.48:472
chr12	6172348	rs2239159	C	A	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr12	6204902	rs5796209	CA	C	1248.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	6230288	rs6489694	A	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	6232426	rs2286608	G	A	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:115,88:0.43:203
chr12	6344600	rs2072372	C	A	4485.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:202,226:0.53:428
chr12	6352292	rs9668222	T	A	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	6422272	rs10849440	T	C	7015.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr12	6424577	rs1003563	A	G	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chr12	6439255	rs10849443	A	G	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	6439470	rs12426675	A	G	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:171,132:0.44:303
chr12	6442346	rs1800692	A	G	3263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.159;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:189,170:0.47:359
chr12	6457062	rs2228576	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr12	6458084	rs3764875	C	T	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	6458274	rs3764874	G	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr12	6463862	rs11614164	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr12	6483463	rs3741914	T	C	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr12	6484709	rs10849447	T	C	3948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.106;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:184,207:0.53:391
chr12	6494306	.	TG	T	11335.73	.	AC=1;AF=0.500;AN=2;DP=647;set=Intersection	GT:AD:AF:DP	0/1:282,343:0.55:625
chr12	6495070	rs4020662	C	CAAA,CAAAA	932.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.59;MQRankSum=-0.218;QD=30.09;ReadPosRankSum=0.603;SOR=1.802;set=HC	GT:AD:AF:DP	1/2:3,18,10:0.58,0.32:31
chr12	6495275	rs2364480	C	A	13208.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr12	6495635	rs5796232	C	CA,CGG	2257.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=80;set=Intersection	GT:AF:DP	1/2:0.63,0.37:70
chr12	6499533	rs2286599	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-0.813;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr12	6500105	rs12354	T	G	11519.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:2,462:1.00:464
chr12	6551899	rs2886090	C	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr12	6552048	rs12316584	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.020;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr12	6552154	rs3759341	A	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=2.444;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr12	6560473	rs2532502	A	G	11540.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr12	6562753	rs2532501	A	G	4602.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:193,231:0.54:424
chr12	6562810	rs2532500	A	G	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:96,97:0.50:193
chr12	6565750	rs10774432	A	G	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.408;QD=9.20;ReadPosRankSum=-0.535;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:61,61:0.50:122
chr12	6567541	.	T	TA	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=4.012;QD=2.59;ReadPosRankSum=0.239;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:97,49:0.34:146
chr12	6570163	rs2534710	C	T	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:129,155:0.55:284
chr12	6572048	rs1045452	A	G	3246.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:155,165:0.52:320
chr12	6572191	rs12964	T	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr12	6574539	rs10849461	A	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.60;ReadPosRankSum=-1.465;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	6575191	rs2534718	A	T	6604.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	6579565	rs2534720	A	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	6579757	rs2532489	T	C	11414.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:4,455:0.99:459
chr12	6579812	rs2072376	T	C	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:87,126:0.59:213
chr12	6601743	rs1001127	A	C	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	6601980	rs4764600	C	G	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:159,151:0.49:310
chr12	6604418	rs6489718	C	T	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:139,100:0.42:239
chr12	6618871	rs7309414	C	T	4422.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:212,215:0.50:427
chr12	6619054	rs7298053	T	C	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:58,83:0.59:141
chr12	6619081	rs144245376	TCTA	T	1155.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr12	6619284	rs714774	C	G	6056.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr12	6619402	rs714775	T	C	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:132,106:0.45:238
chr12	6620495	rs7358768	G	T	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=28.30;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	6623382	rs4764604	A	G	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-1.436;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:47,40:0.46:87
chr12	6623389	rs4764605	T	C	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.28;SOR=1.449;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	6624139	rs9788151	T	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=6.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.198;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:44,29:0.40:73
chr12	6626369	rs758739	G	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	6631169	rs917634	C	A	8744.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	6631888	rs2072373	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr12	6632564	.	G	GTTTTTT	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=0.041;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr12	6635567	rs7311174	A	T	21795.77	.	AC=2;AF=1.00;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	1/1:0,852:1.00:852
chr12	6637845	rs2072374	T	C	8661.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.903;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=3.234;MLEAC=2;MLEAF=1.000;MQ=59.93;MQRankSum=0.000;QD=25.55;ReadPosRankSum=0.964;SOR=0.396;set=HC	GT:AD:AF:DP	1/1:1,338:1.00:339
chr12	6638116	rs740850	C	T	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:132,136:0.51:268
chr12	6638666	rs7316224	C	T	6690.77	.	AC=1;AF=0.500;AN=2;DB;DP=888;set=Intersection	GT:AD:AF:DP	0/1:513,368:0.42:881
chr12	6639088	rs1043262	A	G	11542.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr12	6639981	rs2240871	C	G	3919.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:214,203:0.49:417
chr12	6640676	rs1043271	T	A	147.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.349;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.85;ReadPosRankSum=2.015;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	6640677	rs1127198	T	A	458.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.58;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	6643927	rs3741915	T	G	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:79,135:0.63:214
chr12	6643991	rs1136666	C	G	4757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=11.69;ReadPosRankSum=1.521;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:174,233:0.57:407
chr12	6644256	rs3741918	T	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr12	6646320	rs1065691	T	C	5351.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:220,262:0.54:482
chr12	6647109	rs1803621	T	C	1637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.893;QD=13.21;ReadPosRankSum=1.920;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:45,79:0.64:124
chr12	6657538	rs2286724	T	G	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:60,71:0.54:131
chr12	6659694	rs2286726	G	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr12	6660219	rs7312991	C	T	14389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.48;ReadPosRankSum=1.739;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:273,367:0.57:640
chr12	6660225	rs7301426	T	C	14369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.38;ReadPosRankSum=1.341;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:272,370:0.58:642
chr12	6675870	rs78187632	T	C	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:248,200:0.45:448
chr12	6702095	.	T	C	347.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr12	6709945	rs12816349	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr12	6711144	.	ATCC	A	184.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.850;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:252,24:0.09:276
chr12	6711147	rs1639122	C	A	2063.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:174,113:0.39:287
chr12	6747578	rs1882553	G	C	4873.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:303,255:0.46:558
chr12	6749093	rs2365087	A	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	6756240	rs3803130	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	6762026	rs4764506	T	C	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	6764831	rs4764616	G	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	6777069	rs3835029	TTGC	T	3398.73	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:182,188:0.51:370
chr12	6804902	rs10849498	A	G	6360.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr12	6835068	rs7487866	A	G	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:124,88:0.42:212
chr12	6835081	rs2365100	G	A	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:101,69:0.41:170
chr12	6836852	rs7138427	A	G	9050.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr12	6836913	rs2178691	G	T	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:142,126:0.47:268
chr12	6839388	rs871366	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr12	6839453	rs871365	G	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,40:0.40:99
chr12	6839913	rs2286730	C	T	4039.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:211,210:0.50:421
chr12	6840209	rs3168600	G	A	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:157,121:0.44:278
chr12	6840371	rs11227	G	T	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.516;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:85,46:0.35:131
chr12	6858126	rs2302371	G	A	4247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.754;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:196,219:0.53:415
chr12	6858971	rs7970575	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr12	6859191	rs7969956	G	A	12989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=1103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.426;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:460,627:0.58:1087
chr12	6859308	rs2302370	T	C	12329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=1071;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-0.975;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:462,595:0.56:1057
chr12	6859797	rs2302368	T	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr12	6860030	rs59347851	C	T	4661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=1.052;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:173,229:0.57:402
chr12	6861043	rs2302367	T	C	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:117,105:0.47:222
chr12	6861383	rs11303348	AC	A	9102.73	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:330,328:0.50:658
chr12	6879202	rs4764622	T	C	3106.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:108,142:0.57:250
chr12	6879279	rs4764621	A	G	5589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.144;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=1.373;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:224,282:0.56:506
chr12	6887020	rs870849	T	C	5067.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:208,256:0.55:464
chr12	6909380	rs3216776	TG	T	5598.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:207,149:0.42:356
chr12	6909388	rs2365568	A	G	5501.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:203,147:0.42:350
chr12	6909442	rs2255301	T	C	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:231,126:0.35:357
chr12	6928135	rs55764611	T	G	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	6928586	rs7136817	CA	AG	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	6932967	rs2040353	G	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:126,151:0.55:277
chr12	6933223	rs11575110	C	T	5718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-0.485;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:261,281:0.52:542
chr12	6933787	rs1051409	A	G	6957.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:340,337:0.50:677
chr12	6934989	rs2071080	C	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr12	6935419	rs140165402	C	T	3403.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:159,173:0.52:332
chr12	6935977	rs11612427	A	G	4264.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:259,214:0.45:473
chr12	6938023	rs57050687	C	CG	3598.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	6939850	rs10744716	A	G	9315.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr12	6940254	rs7305463	A	G	9815.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr12	6941021	rs1047771	G	A	13740.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr12	6942672	rs4963513	A	C	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	6942823	rs4963512	A	G	14691.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr12	6946247	rs1129646	G	T	22559.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:2,883:1.00:885
chr12	6946545	rs4963510	C	A	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	6948468	rs1129649	T	C	10896.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr12	6954875	rs5443	C	T	6566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=2.466;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:451,352:0.44:803
chr12	6955865	rs138991440	C	CCACA	2380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.000;QD=10.72;ReadPosRankSum=4.940;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:144,78:0.35:222
chr12	6959095	rs367917525	AC	A	1089.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:63,44:0.41:107
chr12	6965194	rs2226955	A	G	3930.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:196,202:0.51:398
chr12	6965740	rs2238114	C	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:78,65:0.45:143
chr12	6965763	rs72181812	AAG	A	1232.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr12	6965805	rs66621175	T	C	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr12	6969731	rs2071059	A	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr12	6979010	rs2071069	G	A	12617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.646;ClippingRankSum=0.000;DB;DP=1400;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.345;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:740,651:0.47:1391
chr12	7014962	rs2071071	A	G	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:77,69:0.47:146
chr12	7015915	rs1007924	A	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr12	7016449	rs3741921	C	T	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr12	7018949	rs2301137	C	T	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=1.438;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:29,35:0.55:64
chr12	7022085	rs1057077	T	A	5496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.432;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=2.523;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:354,278:0.44:632
chr12	7023123	rs710415	A	G	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:162,151:0.48:313
chr12	7026893	rs376463507	A	AG	2692.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	7026932	rs2071419	T	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr12	7044647	rs367827860	A	AG	1706.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	7045891	rs66756893	ACAGCAGCAGCAGCAGCAGCAG	A,ACAGCAGCAGCAGCAGCAGCAGCAG	13272.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=1232;set=Intersection	GT:AF:DP	1/2:0.46,0.45:786
chr12	7047143	rs7969685	C	A	1760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.411;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:93,91:0.49:184
chr12	7049999	rs2071076	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:83,42:0.34:125
chr12	7053085	rs3087835	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr12	7053149	rs1044189	A	C	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:111,92:0.45:203
chr12	7053362	rs915997	A	G	9562.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr12	7054859	rs2019743	G	A	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	7055860	rs2301262	T	C	6649.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	7065281	rs10744724	C	T	12212.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:1,478:1.00:479
chr12	7065406	rs7963446	G	A	10369.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr12	7065576	rs2110071	G	A	15188.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr12	7065635	rs2110072	T	C	14931.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:2,580:1.00:582
chr12	7069422	rs35119590	TG	T	367.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.206;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:215,43:0.17:258
chr12	7069424	.	G	GC	301.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.093;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:215,42:0.16:257
chr12	7069425	rs28579154	G	C	3292.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=3.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.352;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:97,168:0.63:265
chr12	7069426	.	G	C	354.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=3.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.022;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:231,43:0.16:274
chr12	7069620	rs759052	T	C	19764.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,777:1.00:777
chr12	7069654	rs759053	G	A	11927.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr12	7079215	rs7301709	T	G	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr12	7080210	rs60117710	A	AG	10406.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=44.86;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	7080212	rs17857448	T	C	10415.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	7087711	rs56157656	T	C	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:185,147:0.44:332
chr12	7087910	rs148741189	G	GCA	1607.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chr12	7090193	rs1984564	A	G	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:73,81:0.53:154
chr12	7090659	rs60570787	A	AG	5601.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	7091918	rs3764031	C	T	1716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.383;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:126,94:0.43:220
chr12	7092665	rs34196984	A	G	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:174,148:0.46:322
chr12	7125672	rs61733160	C	G	7432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=906;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-0.004;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:498,397:0.44:895
chr12	7169362	rs12311345	C	T	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr12	7171620	rs7965055	C	T	5931.77	.	AC=1;AF=0.500;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	0/1:469,325:0.41:794
chr12	7175047	rs1143664	A	G	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr12	7187784	rs374614759	GT	G	1350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.828;QD=5.63;ReadPosRankSum=2.605;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:135,105:0.44:240
chr12	7188562	rs75380747	G	T	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:243,174:0.42:417
chr12	7242299	rs1801046	G	A	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:243,229:0.49:472
chr12	7242950	rs4332595	A	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	7244956	rs12422724	A	T	12527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=906;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=0.223;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:553,345:0.38:898
chr12	7244962	rs12426834	T	G	12726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=937;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.232;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:569,358:0.39:927
chr12	7246581	rs56876910	T	TTG	684.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,26:0.44:59
chr12	7249598	rs3742089	T	C	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:279,197:0.41:476
chr12	7261607	rs375807151	TG	T	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.123;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	7274573	rs2290240	A	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr12	7277236	rs2290237	T	A	3826.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:311,212:0.41:523
chr12	7281317	rs10963	C	T	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:93,108:0.54:201
chr12	7284301	rs2167285	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	7284340	rs113297706	C	CGCCTCCTA	553.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr12	7284484	rs10772466	A	C	7020.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr12	7287886	rs6488452	A	C	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:189,163:0.46:352
chr12	7287914	rs2278822	C	T	4861.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:310,257:0.45:567
chr12	7288734	rs2278823	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr12	7290391	rs373564322	T	TGTGTGAGA	514.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.25;MQRankSum=-0.000;QD=27.09;ReadPosRankSum=1.930;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr12	7293796	rs2305341	C	G	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:157,191:0.55:348
chr12	7294657	rs63110460	GT	G,GTT	1069.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.772;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-0.424;SOR=0.947;set=HC	GT:AD:AF:DP	1/2:28,79,49:0.51,0.31:156
chr12	7295314	.	C	CT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.070;QD=3.70;ReadPosRankSum=1.475;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr12	7309199	rs7296261	G	A	4967.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:413,265:0.39:678
chr12	7309471	rs1868799	C	A	2567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-1.130;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:136,71:0.34:207
chr12	7309471	.	CGG	AGC	1662	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=24;MQ=59.77;NF=5;NR=24;PP=1662;QD=59.1540646504;SC=CCAGACGTCCCGGAGCCCCAA;SbPval=0.78;Source=Platypus;TC=98;TCF=22;TCR=76;TR=29;WE=7309481;WS=7309461;set=Platypus	GT:AD:AF:DP	1/0:69,29:0.30:98
chr12	7309473	rs1868800	G	C	2567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=-1.682;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:129,72:0.36:201
chr12	7342858	rs74926388	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr12	7351843	rs1839623	T	C	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	7354201	rs185611606	T	C	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr12	7355898	rs4883087	C	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr12	7360143	rs3825405	C	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr12	7362204	rs141721291	G	GCTGAGTCGGTGGAGTAATGTGCAGAGTTTGAT	4273.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.75;QD=82.19;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	7459443	rs59277746	CA	C	279.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=0.964;SOR=0.442;set=HC	GT:AD:AF:DP	1/1:4,23:0.85:27
chr12	7463241	rs7968241	A	T	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	7463491	rs7962994	C	G	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	7470534	rs7968312	A	T	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	7477298	rs10743732	G	A	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	7519826	rs7974006	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:66,35:0.35:101
chr12	7521563	rs148414953	TGA	T	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.548;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:73,16:0.18:89
chr12	7525795	rs10845007	C	T	161.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	7525865	rs11053518	G	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	7527124	rs35480970	A	G	7186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=917;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=2.168;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:527,384:0.42:911
chr12	7527390	rs113542421	T	C	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:201,190:0.49:391
chr12	7528471	rs7306824	G	A	3854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=-0.889;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:295,210:0.42:505
chr12	7548996	rs4072796	C	G	5424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=-0.989;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:292,272:0.48:564
chr12	7549009	rs4072797	C	T	4080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.247;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:240,207:0.46:447
chr12	7551022	rs6488268	A	T	25822.77	.	AC=2;AF=1.00;AN=2;DB;DP=995;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,984:1.00:984
chr12	7551050	rs6488269	A	C	28666.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=1127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.87;ReadPosRankSum=1.725;SOR=0.267;set=HC	GT:AD:AF:DP	1/1:1,1107:1.00:1108
chr12	7551222	rs7489145	G	C	1444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.002;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=2.270;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:81,71:0.47:152
chr12	7551307	rs7487128	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	7585247	rs58195891	T	C	9241.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:314,445:0.59:759
chr12	7585971	rs10845159	A	G	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:162,183:0.53:345
chr12	7591536	rs59581534	T	A	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:129,94:0.42:223
chr12	7591715	rs58992912	T	G	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:112,88:0.44:200
chr12	7592035	rs10772330	G	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr12	7592139	rs10772331	G	A	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=0.851;QD=11.30;ReadPosRankSum=0.709;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:41,53:0.56:94
chr12	7592194	rs61748920	T	C	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.298;QD=7.33;ReadPosRankSum=-0.490;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:100,70:0.41:170
chr12	7596855	rs7954905	T	C	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	7632376	rs12304718	T	C	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:69,66:0.49:135
chr12	7638020	rs10743939	G	A	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	7649484	rs4883263	T	C	12643.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr12	7649653	rs4883264	T	C	17299.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr12	7655137	rs3210140	A	G	11532.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:2,451:1.00:453
chr12	7655278	rs11836971	T	A	7534.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	7803562	rs10431308	C	A	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	7805236	rs2302515	C	G	6948.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr12	7805467	rs2080127	C	T	8164.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr12	7805511	rs5796282	T	TA	3759.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr12	7807138	rs10845624	G	A	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	7818348	.	GAC	G	522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=8.522;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.858;QD=14.13;ReadPosRankSum=1.045;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr12	7842932	rs12819884	C	T	2491.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:133,127:0.49:260
chr12	7843373	rs3815479	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr12	7847940	rs6488591	C	T	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.85;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	7864312	rs999074	C	T	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=23.67;SOR=1.357;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	7894056	rs73056605	G	A	13140.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.22;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,521:1.00:521
chr12	7894132	rs80204298	GA	G	5569.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	7894188	rs73056607	C	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	7898824	rs7134479	A	G	959.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.792;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.59;ReadPosRankSum=-1.423;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr12	7942472	rs12826131	AG	GA	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	7942514	rs12816791	C	A	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	7942556	rs12821889	G	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	7945640	rs2889551	G	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.47;QD=31.24;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	7945670	rs4354764	G	A	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.95;QD=29.86;SOR=3.872;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	7945757	rs4438116	C	T	10798.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.99;QD=25.77;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr12	7945829	rs4242903	G	C	12202.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.41;QD=25.80;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr12	7945871	rs11831829	C	T	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	7945916	rs34261320	G	A	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	7945927	rs58791167	A	G	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	7947017	rs1860931	T	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	7947304	rs4012939	T	C	15699.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.15;QD=27.02;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,581:1.00:581
chr12	7970347	.	T	TATAGATAGATAGATAGATAG	3073.73	.	AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.60;QD=64.04;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	7970721	rs10845990	T	G	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	7980035	rs10846003	T	C	9105.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.37;QD=26.09;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	7980306	rs56049529	T	TA	2848.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	7982753	rs71038781	CT	C	495.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=1.308;QD=9.71;ReadPosRankSum=-1.052;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,41:0.80:51
chr12	7984447	rs10772787	G	A	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	7985460	rs17728008	T	C	2171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.079;QD=9.28;ReadPosRankSum=2.565;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:121,113:0.48:234
chr12	8074192	rs25684	G	A	8004.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	8082585	.	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.221;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:73,19:0.21:92
chr12	8088766	rs2541281	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	8090271	rs11056574	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=23.01;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	8090317	.	C	CA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.533;QD=1.12;ReadPosRankSum=0.356;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr12	8091038	.	T	C	2488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DP=715;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.956;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:517,184:0.26:701
chr12	8196445	rs2277414	T	G	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	8197424	rs35642012	C	G	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:95,80:0.46:175
chr12	8203273	rs17801353	T	G	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:84,78:0.48:162
chr12	8203400	rs61922169	G	C	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=0.378;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	8211784	rs56136109	A	G	5575.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:221,274:0.55:495
chr12	8235172	rs66928724	GT	G	2217.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;MQ=60.31;set=Intersection	GT:AD:AF:DP	1/1:8,122:0.94:130
chr12	8276432	rs7295783	C	T	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	8278181	rs2024301	A	T	13419.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,522:1.00:522
chr12	8286762	rs7315526	G	C	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	8287048	rs11043498	C	T	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	8288098	rs10840746	T	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	8288403	rs17728942	G	A	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	8289226	rs4322490	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	8289300	rs4573763	T	C	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	8374770	rs9668474	G	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	8374781	rs71265055	C	CACG	3654.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	8543143	rs4403873	T	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.01;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	8543152	rs149165389	C	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.01;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	8543158	rs138583618	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.01;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	8543279	rs116662399	T	C	183.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.77;QD=45.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	8543285	rs117574727	G	C	183.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.23;QD=36.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	8543323	rs9706467	A	C	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	8543366	rs34978072	A	G	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	8543389	rs9706468	A	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.66;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	8543395	rs9705548	G	A	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.66;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	8608502	rs4628756	T	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	8608583	rs4528410	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	8612336	rs10770736	G	C	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	8612481	rs12300621	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	8617976	rs7302011	A	T	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	8617982	rs7315873	G	A	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	8757481	rs2028373	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.77;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	8757522	rs5796316	C	CA	439.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.671;QD=14.66;ReadPosRankSum=1.282;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:5,25:0.83:30
chr12	8759445	rs2518144	C	T	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:123,96:0.44:219
chr12	8765447	rs1345004	T	C	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	8808006	rs11046589	T	C	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.718;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-0.981;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:76,57:0.43:133
chr12	8808655	rs11359613	CT	C	90.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-1.022;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr12	8926011	rs2969089	T	C	9765.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.50;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr12	8987417	rs17729632	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr12	8988403	rs4883188	A	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	8988777	rs1894814	A	G	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr12	8989916	rs11047510	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr12	8990813	rs10743504	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr12	8997841	rs7300139	G	T	1970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-0.428;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:157,111:0.41:268
chr12	8998892	rs55906630	A	G	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.424;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.376;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:49,45:0.48:94
chr12	9002932	rs6487407	A	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr12	9004512	rs1860927	G	A	3386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=2.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=1.555;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:164,175:0.52:339
chr12	9004667	rs4882965	G	C	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:53,96:0.64:149
chr12	9004892	rs1860926	C	A	8741.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr12	9007225	rs6144605	GAGTTCTTCTGAGCTTC	G	459.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr12	9007492	rs35075098	A	ATT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=-0.340;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	9008318	rs1468711	G	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.09;ReadPosRankSum=-0.475;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	9009999	rs3079157	T	TAA	1650.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr12	9010226	rs73038782	A	G	3722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.993;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:290,207:0.42:497
chr12	9013755	rs1860967	C	T	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr12	9016456	rs73040625	C	T	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:115,123:0.52:238
chr12	9016573	rs10219561	A	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	9020489	rs7308811	A	G	3359.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:204,182:0.47:386
chr12	9020912	rs1476910	A	G	9804.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr12	9021053	rs5796325	C	CGT,CGTGT	3909.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=111;set=Intersection	GT:AF:DP	1/2:0.17,0.81:98
chr12	9021316	rs10664353	T	TAC	298.74	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	9027716	rs73047833	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr12	9068472	rs10771204	G	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	9068813	rs7304121	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	9068814	.	T	TG	31	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=8;HapScore=4;MGOF=12;MMLQ=23;MQ=59.86;NF=0;NR=3;PP=31;QD=16.0;SC=AACTAAAGACTGGGGGGGGAT;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=3;WE=9068822;WS=9068803;set=Platypus	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	9070366	rs4883198	T	A	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:130,176:0.58:306
chr12	9074259	rs1805741	C	T	5641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=1.244;QD=10.87;ReadPosRankSum=-1.052;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:247,272:0.52:519
chr12	9082855	rs1805778	A	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	9083336	rs1805777	A	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.68;QD=30.84;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	9085099	rs887783	G	A	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:197,189:0.49:386
chr12	9086683	rs1805735	A	T	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:123,83:0.40:206
chr12	9090668	rs3026261	C	T	4883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-0.978;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:330,262:0.44:592
chr12	9095226	rs1805731	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr12	9095268	rs1805730	A	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	9095905	rs113829875	T	TAC	2103.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:54,59:0.52:113
chr12	9097933	rs1805725	C	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr12	9098995	rs149871778	G	GAAC	5712.73	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:121,146:0.55:267
chr12	9099034	rs4140911	G	A	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:67,61:0.48:128
chr12	9205540	rs2216143	T	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	9220729	rs7955940	G	A	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-0.414;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:122,86:0.41:208
chr12	9222286	rs1805664	C	T	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-1.947;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:125,95:0.43:220
chr12	9223242	rs16917971	A	C	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:55,81:0.60:136
chr12	9227058	rs1805660	T	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	9230038	rs2377682	C	T	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:97,114:0.54:211
chr12	9230131	rs1805653	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr12	9230572	rs1805652	G	T	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.714;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr12	9232268	rs669	T	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr12	9242623	rs11609582	A	T	2375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.005;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=0.929;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:120,174:0.59:294
chr12	9242924	rs2193005	G	C	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:214,132:0.38:346
chr12	9246176	rs3832852	CTATGG	C	4681.73	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:178,126:0.41:304
chr12	9246250	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-2.011;QD=0.90;ReadPosRankSum=-1.550;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:102,25:0.20:127
chr12	9248233	rs226405	T	C	8461.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.113;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=3.222;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=1.687;SOR=0.388;set=HC	GT:AD:AF:DP	1/1:1,335:1.00:336
chr12	9253894	rs226397	C	T	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	9256708	rs226390	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	9260280	rs226388	T	C	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	9262727	rs226386	T	G	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	9264946	rs226383	T	G	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:117,139:0.54:256
chr12	9268473	rs226380	A	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	9268585	rs226379	T	C	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	9303349	rs3741852	G	C	2757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=2.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-0.207;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:172,148:0.46:320
chr12	9305473	rs10771357	T	C	3790.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:176,197:0.53:373
chr12	9307373	rs2377741	T	G	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	9310565	rs4882981	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr12	9310576	rs10771364	T	G	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr12	9310959	rs7298673	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr12	9311265	rs3741850	A	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr12	9313518	rs7972015	T	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr12	9317784	rs2277413	A	G	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	9321501	rs3213832	C	T	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr12	9321677	rs10492114	C	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.06;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	9333907	rs3782676	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	9334571	rs3741849	C	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr12	9334728	rs3832849	G	GAGTGAGACAAAATGGTCATA	1594.73	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr12	9344962	rs12423745	A	G	4326.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:209,215:0.51:424
chr12	9345273	rs10771407	A	G	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:142,168:0.54:310
chr12	9345408	rs2075395	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr12	9349370	rs11049396	C	CT	129.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	9352908	rs6487668	C	A	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-1.444;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:25,44:0.64:69
chr12	9446913	rs61916248	C	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr12	9446932	rs61916249	G	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr12	9446977	rs3874129	G	C	6897.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr12	9447061	rs200332681	C	T	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:105,128:0.55:233
chr12	9447484	rs77482466	C	T	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.231;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=5.734;MLEAC=1;MLEAF=0.500;MQ=52.85;MQRankSum=-10.279;QD=7.06;ReadPosRankSum=-1.313;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:128,57:0.31:185
chr12	9447492	rs75754601	T	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=-3.231;QD=1.52;ReadPosRankSum=-1.254;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:133,32:0.19:165
chr12	9450357	rs375411540	A	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.22;QD=26.96;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	9450594	rs61916255	C	T	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.49;QD=39.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	9450603	rs142596611	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.28;QD=42.65;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	9451295	.	CG	C	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=43.99;MQRankSum=-2.489;QD=6.46;ReadPosRankSum=-1.511;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr12	9451370	rs200995345	T	C	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=3.964;MLEAC=1;MLEAF=0.500;MQ=51.62;MQRankSum=-11.180;QD=2.79;ReadPosRankSum=4.912;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:296,91:0.24:387
chr12	9451397	rs74390404	G	A	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=52.69;MQRankSum=-11.961;QD=2.70;ReadPosRankSum=2.471;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:413,125:0.23:538
chr12	9452062	rs75887043	A	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.61;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	9452110	rs79328008	G	A	56.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.61;QD=14.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	9453656	rs61917368	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.024;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.22;MQRankSum=-0.888;QD=8.15;ReadPosRankSum=0.045;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr12	9453726	rs61917369	G	A	2575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.961;MLEAC=1;MLEAF=0.500;MQ=46.62;MQRankSum=3.919;QD=32.20;ReadPosRankSum=-0.153;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:17,63:0.79:80
chr12	9453743	rs28415351	C	A,G	4478.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=49.26;QD=31.54;SOR=1.819;set=HC	GT:AD:AF:DP	1/2:0,109,33:0.77,0.23:142
chr12	9453854	rs370590832	TC	T	1904.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-6.431;QD=4.69;ReadPosRankSum=2.004;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:311,95:0.23:406
chr12	9453864	rs61917370	A	G	5036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.127;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=4.637;MLEAC=1;MLEAF=0.500;MQ=54.36;MQRankSum=-14.846;QD=13.84;ReadPosRankSum=1.241;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:188,176:0.48:364
chr12	9455171	rs373750394	A	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.78;MQRankSum=1.584;QD=17.06;ReadPosRankSum=-0.075;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	9455342	rs80134739	A	G	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-13.129;QD=9.16;ReadPosRankSum=-0.011;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:131,125:0.49:256
chr12	9455428	rs11050141	A	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	9456640	rs201046098	C	A	692.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.429;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=6.546;MLEAC=2;MLEAF=1.000;MQ=39.96;MQRankSum=-0.144;QD=26.64;ReadPosRankSum=0.617;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr12	9456729	rs11050148	T	C	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.89;QD=26.23;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	9456838	rs10843357	G	A	7817.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=25.38;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr12	9458412	rs10743653	G	C	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.400;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=10.268;MLEAC=1;MLEAF=0.500;MQ=44.11;MQRankSum=-3.279;QD=23.99;ReadPosRankSum=-0.864;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr12	9459854	rs9971685	G	C	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=5.503;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-5.874;QD=4.62;ReadPosRankSum=-1.325;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:235,99:0.30:334
chr12	9459898	rs2911825	G	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:163,29:0.15:192
chr12	9462680	.	GTAA	G	1380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.910;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=53.27;MQRankSum=-3.239;QD=16.84;ReadPosRankSum=1.580;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:45,37:0.45:82
chr12	9462681	.	T	TGCC	1974	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=1;MGOF=15;MMLQ=24;MQ=52.46;NF=4;NR=12;PP=1974;QD=128.123391025;SC=TTTCTGTGGGTAATACCTCAT;SbPval=0.19;Source=Platypus;TC=50;TCF=7;TCR=43;TR=16;WE=9462694;WS=9462671;set=Platypus	GT:AD:AF:DP	0/1:34,16:0.32:50
chr12	9462685	.	A	G	1434.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.232;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.67;MQRankSum=-3.441;QD=17.93;ReadPosRankSum=2.081;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:43,37:0.46:80
chr12	9462686	.	C	CCGTTTT	1425.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.375;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.74;MQRankSum=-3.441;QD=17.82;ReadPosRankSum=2.081;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:43,37:0.46:80
chr12	9462709	rs2889720	A	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	9463010	rs4883234	C	G	19903.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.49;QD=26.57;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,749:1.00:749
chr12	9463077	rs10771513	A	C	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:119,102:0.46:221
chr12	9463105	rs11050177	A	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr12	9463774	rs55809356	G	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:135,119:0.47:254
chr12	9463806	rs10771515	T	C	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.80;QD=26.14;SOR=1.228;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	9464060	rs12822747	G	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.690;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-5.901;QD=1.82;ReadPosRankSum=-2.335;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:48,8:0.14:56
chr12	9464109	rs12824979	A	G	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:170,103:0.38:273
chr12	9464126	rs201695391	A	G	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.284;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=2.749;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-5.485;QD=1.68;ReadPosRankSum=-0.442;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:380,74:0.16:454
chr12	9464133	rs10843383	C	G	2016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=5.064;QD=3.80;ReadPosRankSum=1.870;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:399,132:0.25:531
chr12	9464178	rs112191067	G	A	2642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=1097;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-9.759;QD=2.42;ReadPosRankSum=-1.215;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:857,236:0.22:1093
chr12	9464241	rs61917427	C	A	8659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0.000;DB;DP=1424;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-23.970;QD=6.10;ReadPosRankSum=6.623;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:911,509:0.36:1420
chr12	9464271	.	C	CGTT	10044.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DP=1276;ExcessHet=3.0103;FS=4.895;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-26.159;QD=8.33;ReadPosRankSum=-1.311;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:898,308:0.26:1206
chr12	9464748	rs10771516	G	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr12	9464828	rs12581470	C	T	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:141,178:0.56:319
chr12	9465465	rs11050199	A	G	3490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=3.617;QD=7.67;ReadPosRankSum=-1.973;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:267,188:0.41:455
chr12	9465495	rs147788242	A	AT	2353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.595;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=2.990;QD=6.84;ReadPosRankSum=0.054;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:221,123:0.36:344
chr12	9465660	rs200338757	A	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.02;MQRankSum=-3.814;QD=10.56;ReadPosRankSum=-0.995;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr12	9465872	rs4012572	G	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	9549634	rs11308534	AG	A	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr12	9555110	rs12821647	A	G	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.257;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=22.109;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-9.985;QD=2.73;ReadPosRankSum=-4.632;SOR=2.123;set=HC	GT:AD:AF:DP	0/1:143,39:0.21:182
chr12	9555185	rs72475431	A	G	2075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=56.51;MQRankSum=-8.108;QD=12.97;ReadPosRankSum=6.873;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:83,77:0.48:160
chr12	9555195	rs58903301	T	TC	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-8.482;QD=3.25;ReadPosRankSum=7.490;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:111,31:0.22:142
chr12	9571547	rs61916776	C	G	11420.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr12	9571599	rs73242993	C	A	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:342,214:0.38:556
chr12	9571619	rs146700084	T	C	6100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=4.293;QD=13.38;ReadPosRankSum=0.080;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:168,288:0.63:456
chr12	9571670	rs77617533	T	C	4648.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.65;QD=26.26;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	9572244	rs7305608	A	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	9572788	rs145731114	C	CGCACCTGGAT	5193.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.20;QD=45.16;SOR=5.838;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	9572819	rs10843740	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.15;MQRankSum=0.942;QD=8.79;ReadPosRankSum=-0.397;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr12	9572871	rs10843741	T	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.76;MQRankSum=1.569;QD=7.14;ReadPosRankSum=2.942;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr12	9572944	rs7955974	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.75;MQRankSum=0.185;QD=6.87;ReadPosRankSum=1.972;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	9573130	rs7358608	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:60,18:0.23:78
chr12	9573223	rs4763936	C	A	3023.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.937;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=3.019;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=1.038;QD=9.57;ReadPosRankSum=0.218;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:164,152:0.48:316
chr12	9573224	rs7358609	C	T	2140.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=3.453;QD=6.73;ReadPosRankSum=0.422;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:197,121:0.38:318
chr12	9573287	rs375873947	AAGGAAGGG	A	2920.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.538;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.504;QD=17.18;ReadPosRankSum=4.200;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:92,78:0.46:170
chr12	9573291	rs67766754	AAGGG	A	866.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=7.422;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-1.412;QD=5.59;ReadPosRankSum=2.221;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:102,53:0.34:155
chr12	9573309	.	G	GCCC	1811.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=1.619;QD=13.62;ReadPosRankSum=0.593;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:83,50:0.38:133
chr12	9573338	rs4763950	G	A	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	9574002	rs10771709	C	T	18352.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=26.64;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,689:1.00:689
chr12	9574042	rs7298124	C	A	9401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=1069;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-1.102;QD=8.81;ReadPosRankSum=1.767;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:574,493:0.46:1067
chr12	9574119	rs4764050	A	G	20584.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:1,767:1.00:768
chr12	9574344	rs4237949	T	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.09;QD=27.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	9574480	rs7132464	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.19;QD=27.65;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	9577027	rs3825308	C	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr12	9577310	rs7296629	A	C	8045.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr12	9577992	rs201150453	C	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.430;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=44.44;MQRankSum=-0.424;QD=4.52;ReadPosRankSum=0.700;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr12	9578197	rs76671194	A	T	19016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.814;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=7.268;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=10.904;QD=19.60;ReadPosRankSum=5.608;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:118,852:0.88:970
chr12	9580122	rs61914680	A	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:85,31:0.27:116
chr12	9580203	rs58705479	G	C	10013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=11.838;QD=18.97;ReadPosRankSum=-4.774;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:78,450:0.85:528
chr12	9580395	rs61914681	C	G	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.82;QD=41.78;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	9581584	rs4763564	C	G	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=2.766;QD=11.54;ReadPosRankSum=0.279;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:37,49:0.57:86
chr12	9581791	rs4763566	T	C	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:84,60:0.42:144
chr12	9581856	rs200761361	C	T	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=40.31;MQRankSum=-1.058;QD=13.99;ReadPosRankSum=1.142;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	9582244	rs201653123	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.929;MLEAC=1;MLEAF=0.500;MQ=42.91;MQRankSum=1.629;QD=7.39;ReadPosRankSum=1.332;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	9583216	rs3864916	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.09;QD=43.58;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	9583221	rs3864915	G	A	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.26;QD=40.40;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	9583324	rs4012577	G	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.279;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.76;MQRankSum=0.396;QD=7.07;ReadPosRankSum=0.621;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr12	9583365	.	A	AGGGCG	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.14;MQRankSum=0.992;QD=17.37;ReadPosRankSum=0.565;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	9585487	rs56309949	G	T	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.500;MQ=48.94;MQRankSum=-4.139;QD=9.33;ReadPosRankSum=-3.170;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:40,42:0.51:82
chr12	9585598	rs200479049	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.98;QD=25.85;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	9590052	rs149680272	G	A	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:107,126:0.54:233
chr12	9590197	rs61914700	T	C	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.91;QD=25.70;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	9590505	rs201948852	G	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=47.11;MQRankSum=-1.609;QD=18.18;ReadPosRankSum=-2.323;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:14,40:0.74:54
chr12	9590651	.	A	ACTGAGTAAC	7668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DP=759;ExcessHet=3.0103;FS=5.355;MLEAC=1;MLEAF=0.500;MQ=48.24;MQRankSum=-12.387;QD=11.98;ReadPosRankSum=1.611;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:425,215:0.34:640
chr12	9633258	rs4015230	A	G	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.71;QD=25.02;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	9633375	rs4015231	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	9664292	rs10843926	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.15;QD=26.10;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	9688883	rs2536903	A	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	9693196	rs138943288	G	A	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.86;QD=25.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	9707098	rs7309655	C	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.31;QD=25.42;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	9711954	rs2536846	A	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.47;QD=29.20;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	9712911	rs200418990	G	A	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.03;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	9725847	rs78525383	T	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	9747744	rs3214342	T	TA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.063;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-0.976;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr12	9750669	rs1135816	A	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr12	9751035	rs3072716	C	CAT	2710.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	9752576	rs67712680	TAAA	T	64.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-0.792;QD=9.25;ReadPosRankSum=1.465;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	9754221	rs3072720	A	AAAAC	6751.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.599;MLEAC=2;MLEAF=1.000;MQ=60.58;MQRankSum=0.761;QD=40.43;ReadPosRankSum=-0.753;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:6,161:0.96:167
chr12	9832822	rs2114872	C	T	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=24.83;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	9832882	rs2114873	T	C	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	9833524	rs3764022	C	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr12	9833628	rs3764021	C	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,41:0.41:101
chr12	9840773	rs7310460	T	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.32;ReadPosRankSum=0.879;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	9846521	rs7968401	C	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr12	9869271	rs2268146	A	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr12	9885526	rs12304510	C	T	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:116,81:0.41:197
chr12	9885707	rs71045297	A	ATAAGT	6191.73	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:143,158:0.52:301
chr12	9906067	rs1051065	T	C	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	9906324	rs111791571	A	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	9906350	rs57931161	GA	G	171.06	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr12	9980243	rs2232543	A	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	9994445	rs33911869	GTGT	G	4282.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	10010006	rs33873	G	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr12	10014936	rs253148	A	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	10015082	rs253147	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	10015177	rs253146	A	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	10069302	rs526680	C	T	3788.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:311,208:0.40:519
chr12	10124373	rs2961542	C	T	42.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	10131684	rs607567	T	G	4230.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:206,207:0.50:413
chr12	10136672	rs2961544	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	10137557	rs479499	A	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-1.270;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:33,32:0.49:65
chr12	10137645	rs588272	T	G	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	10146005	rs11412323	C	CA	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.842;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr12	10146014	rs11447004	A	AC	608.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-1.039;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr12	10146236	rs617956	C	T	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:215,134:0.38:349
chr12	10146470	rs542700	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr12	10149406	rs581949	T	C	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chr12	10149657	rs582968	T	C	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=0.594;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:95,93:0.49:188
chr12	10149851	rs583903	C	T	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	10150974	rs2273986	A	G	4923.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:264,253:0.49:517
chr12	10151642	rs612593	T	C	8724.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.218;QD=25.29;ReadPosRankSum=-1.029;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:2,343:0.99:345
chr12	10151762	rs11379994	T	TC	16716.73	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=38.08;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr12	10163375	rs1359082	C	A	4281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=3.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=-0.514;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:121,110:0.48:231
chr12	10163379	rs1359083	C	T	4323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=4.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=-0.697;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:125,118:0.49:243
chr12	10165469	rs476474	A	G	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	10165593	rs620449	T	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr12	10167277	rs637790	G	C	8123.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr12	10206925	rs7315231	A	G	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr12	10215582	rs10772230	G	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	10217326	rs10622534	C	CTT	5947.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=44.72;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	10241593	rs1352477	A	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	10241829	rs2277416	G	T	6312.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	10245158	rs11347002	GA	G	1336.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	10245237	rs11444183	G	GT	185.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	10251256	rs10706436	GA	G	336.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	10251287	rs6488257	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr12	10251385	rs3816845	T	C	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	10251445	rs2306894	C	G	7665.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr12	10271055	rs7959451	T	C	10564.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=0.670;SOR=0.334;set=HC	GT:AD:AF:DP	1/1:1,407:1.00:408
chr12	10275684	rs11053608	T	G	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	10275993	.	AAG	A	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.132;QD=2.64;ReadPosRankSum=-2.144;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr12	10279513	rs35532667	T	TA	125.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	10312648	rs13306593	C	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	10312691	rs17174597	T	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	10312878	rs2634156	C	T	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	10312914	rs3816844	G	A	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	10313075	rs3736235	T	C	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	10313134	rs3736234	G	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	10313358	rs3736232	C	G	6095.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	10370763	rs73058099	A	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:116,99:0.46:215
chr12	10373324	rs7301041	T	A	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	10460543	rs2302489	A	T	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=0.706;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:33,73:0.69:106
chr12	10461883	rs10734825	A	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	10462052	rs10772256	T	G	4982.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	10462431	rs7980604	G	A	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	10467533	rs2537752	T	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.52;ReadPosRankSum=0.330;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	10511662	rs10743886	C	T	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	10525644	rs1351113	A	G	7368.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr12	10525740	rs1049172	C	T	15051.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr12	10531896	rs2255364	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	10532111	rs2255353	T	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	10532326	rs2255336	T	C	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr12	10532434	rs2617151	A	G	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	10560824	rs2617169	T	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	10560957	rs2617170	T	C	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	10562025	rs1841957	C	T	7349.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	10562089	rs1841958	A	C	9919.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr12	10570965	rs2682495	C	G	10868.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr12	10571042	rs2741882	A	G	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	10571091	rs2682494	T	G	5657.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	10571106	rs2682493	G	C	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	10571158	rs10743890	C	T	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	10571177	rs4394921	A	G	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	10571504	rs4579992	C	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.24;QD=41.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	10571514	rs4275705	C	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.22;QD=42.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	10571536	rs33947579	A	AT	286.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.22;QD=26.07;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	10572839	rs2253365	A	T	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	10572982	rs2741881	A	G	8087.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	10573094	rs2682491	C	G	4764.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.52;MQRankSum=-0.804;QD=41.80;ReadPosRankSum=-1.071;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:2,112:0.98:114
chr12	10573095	rs2682490	A	G	4764.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.49;MQRankSum=-0.804;QD=44.95;ReadPosRankSum=-1.034;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:2,104:0.98:106
chr12	10573145	rs2682489	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.719;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=13.570;MLEAC=1;MLEAF=0.500;MQ=47.31;MQRankSum=-2.863;QD=14.85;ReadPosRankSum=-3.195;SOR=4.615;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	10583611	rs3003	C	T	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	10583696	rs2981593	C	T	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	10586921	.	C	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=16.938;MLEAC=1;MLEAF=0.500;MQ=51.68;MQRankSum=-4.416;QD=6.12;ReadPosRankSum=-1.834;SOR=3.952;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr12	10586946	rs113946028	C	T	2221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=7.022;MLEAC=1;MLEAF=0.500;MQ=49.17;MQRankSum=-4.589;QD=15.65;ReadPosRankSum=-1.838;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:87,55:0.39:142
chr12	10586956	rs72475445	C	G	2703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.35;MQRankSum=-3.071;QD=13.59;ReadPosRankSum=-2.415;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:111,88:0.44:199
chr12	10586961	rs1356930	T	C	2695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=50.97;MQRankSum=2.467;QD=12.20;ReadPosRankSum=1.903;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:98,123:0.56:221
chr12	10586978	rs144149096	A	AT	3329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=52.47;MQRankSum=-0.849;QD=10.74;ReadPosRankSum=-1.394;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:164,146:0.47:310
chr12	10587111	rs61917677	A	G	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=26.28;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	10587158	rs35801775	A	T	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,53:0.52:102
chr12	10587631	rs144960284	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr12	10588530	rs75545535	C	G	3685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=2.444;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=1.221;QD=8.88;ReadPosRankSum=1.974;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:214,201:0.48:415
chr12	10588581	rs28403159	T	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:174,55:0.24:229
chr12	10588647	rs28730284	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.975;MLEAC=1;MLEAF=0.500;MQ=53.76;MQRankSum=-0.444;QD=4.03;ReadPosRankSum=1.056;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr12	10594848	rs78547237	C	A	48.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.41;QD=16.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	10599427	rs4763533	C	T	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	10600282	rs11053804	C	T	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr12	10602077	rs2734440	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr12	10602624	rs3216778	TTTTAAG	T	70.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	10603670	rs2253849	T	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	10658942	rs7135490	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:46,76:0.62:122
chr12	10659438	rs10772299	T	C	7768.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr12	10659964	rs10772300	C	G	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	10675250	rs7980396	G	C	10519.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr12	10746385	rs2244387	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	10748403	rs2682484	A	T	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	10759032	rs10772333	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	10760305	rs2290718	G	C	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-1.114;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	10760328	rs3947920	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.53;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	10760335	rs2125090	T	A	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.31;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	10760380	rs2125089	G	A	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	10760624	rs10845180	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.000;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr12	10762069	rs7311796	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	10763205	rs11053880	T	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.73;ReadPosRankSum=-2.531;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr12	10763236	rs10845182	G	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	10763419	rs72054859	CTAGACATG	C	233.79	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	10763440	rs12811247	G	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	10766244	rs10772335	A	C	10168.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr12	10772983	rs1870194	A	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-1.541;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	10774698	rs2900467	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.47;ReadPosRankSum=0.226;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	10775195	rs1078437	T	C	9002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=819;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.188;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:362,448:0.55:810
chr12	10782115	rs3759259	T	C	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr12	10782116	rs4763567	G	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr12	10783729	rs2290717	A	G	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:87,89:0.51:176
chr12	10784021	rs2168746	G	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	10786757	rs5796407	T	TGAA	7911.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	10786797	rs2252664	C	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr12	10854878	rs3782670	A	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	10856219	rs2418102	C	T	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:138,121:0.47:259
chr12	10856255	rs2418103	A	G	2470.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:162,135:0.45:297
chr12	10856799	rs7963247	T	C	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:132,73:0.36:205
chr12	10856845	rs141466000	CA	C	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr12	10865971	rs2305848	G	C	3112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.400;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:193,159:0.45:352
chr12	10870900	rs11309033	AC	A	397.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	10871667	rs33016	A	G	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	10875488	rs1126501	T	C	5617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DB;DP=728;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.807;QD=7.80;ReadPosRankSum=0.777;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:415,305:0.42:720
chr12	10875525	rs1042085	G	A	3658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.872;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:263,192:0.42:455
chr12	10954258	rs619381	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr12	10958658	rs2537817	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.32;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	10959031	rs1548803	C	T	2824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=3.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-0.391;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:136,138:0.50:274
chr12	10962115	rs3741845	A	G	2057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.406;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:144,112:0.44:256
chr12	10978402	rs597468	G	A	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	10999708	rs1047699	T	C	2038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=-0.159;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:145,114:0.44:259
chr12	10999780	rs1063193	C	T	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:139,110:0.44:249
chr12	11138935	rs66679979	T	C	9734.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr12	11183191	rs116737741	T	C	22287.77	.	AC=2;AF=1.00;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	1/1:0,879:1.00:879
chr12	11201689	rs2597986	C	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	11201962	rs2597987	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	11244941	rs73064974	G	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr12	11418954	rs1896551	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	11421093	rs61463237	T	TGGG	9213.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	11421522	rs59152757	C	T	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	11461836	rs6488386	T	C	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.299;QD=8.34;ReadPosRankSum=2.798;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:120,91:0.43:211
chr12	11462275	rs1834857	A	G	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:97,86:0.47:183
chr12	11506211	rs76504934	A	C	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:97,67:0.41:164
chr12	11506749	.	T	C	1799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=3.627;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=-11.935;QD=5.23;ReadPosRankSum=0.882;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:270,74:0.22:344
chr12	11506774	rs202083397	C	T	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=6.879;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-12.920;QD=4.70;ReadPosRankSum=-3.647;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:237,48:0.17:285
chr12	11506785	rs201935302	C	T	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=7.153;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-11.226;QD=2.86;ReadPosRankSum=-3.887;SOR=1.326;set=HC	GT:AD:AF:DP	0/1:228,33:0.13:261
chr12	11506893	rs10845341	C	T	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	11546742	rs201044388	T	C	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.472;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=55.04;MQRankSum=-5.210;QD=3.38;ReadPosRankSum=4.220;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:183,70:0.28:253
chr12	11546781	rs71443675	C	T	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=3.710;QD=5.52;ReadPosRankSum=0.711;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:132,70:0.35:202
chr12	11803220	rs2856305	A	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.88;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	11904752	rs2856338	T	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	11904767	rs10845410	C	T	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.53;ReadPosRankSum=-1.002;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:30,41:0.58:71
chr12	11904770	rs2724599	A	T	1602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.90;ReadPosRankSum=-0.655;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:30,40:0.57:70
chr12	11904983	rs2724600	A	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.77;ReadPosRankSum=-1.050;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	12037318	rs10845417	C	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-0.040;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr12	12044393	rs71435871	T	TTA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.81;ReadPosRankSum=-0.496;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	12230938	rs1641721	C	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=-1.070;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr12	12240199	rs879732	C	T	8441.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr12	12247594	rs11054682	A	G	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:150,141:0.48:291
chr12	12247616	rs11054683	T	C	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:167,154:0.48:321
chr12	12247921	rs71435888	AT	A	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.380;QD=5.45;ReadPosRankSum=-0.645;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:34,52:0.60:86
chr12	12251711	rs2448031	C	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr12	12251761	rs1797646	C	G	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:97,62:0.39:159
chr12	12252078	rs1797647	T	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr12	12265118	rs55833207	CA	C	373.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=19.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	12291479	rs2075241	G	C	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=4.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-1.177;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:50,37:0.43:87
chr12	12301898	rs2302685	C	T	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:74,43:0.37:117
chr12	12397668	rs10219768	T	A	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.47;ReadPosRankSum=2.142;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr12	12397668	.	TTA	ATT	488	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=24;MQ=60.0;NF=2;NR=11;PP=488;QD=41.6513749894;SC=TCAAATCGGTTTAAGTGAGCA;SbPval=0.7;Source=Platypus;TC=22;TCF=4;TCR=18;TR=13;WE=12397678;WS=12397658;set=Platypus	GT:AD:AF:DP	1/0:9,13:0.59:22
chr12	12397670	rs10219748	A	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.49;ReadPosRankSum=2.008;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr12	12483275	rs1861676	G	A	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	12483713	rs4763282	A	G	6553.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr12	12483927	rs4763818	G	A	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	12510097	rs10772552	C	T	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	12618427	rs3751261	C	T	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:137,127:0.48:264
chr12	12618715	rs967648	T	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	12630346	rs12815760	G	A	5792.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:251,286:0.53:537
chr12	12790737	rs10845599	G	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr12	12814818	rs4763862	C	T	6625.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	12873906	rs76967889	A	G	62.81	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	12879057	rs34323	G	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-0.915;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,34:0.61:56
chr12	12938793	rs7297140	G	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr12	12966967	rs7978823	A	G	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:79,111:0.58:190
chr12	12967127	rs1051374	C	T	4011.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:291,218:0.43:509
chr12	12967264	rs3741826	C	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	12977400	rs1010878	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr12	12980446	rs12425168	G	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr12	13028653	rs10845659	A	G	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr12	13061294	rs2075288	C	T	4722.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:291,233:0.44:524
chr12	13101454	rs7294444	G	T	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=0.372;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:42,49:0.54:91
chr12	13102605	rs4630382	G	A	7884.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:336,385:0.53:721
chr12	13136615	rs759601	C	G	3871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.611;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:260,200:0.43:460
chr12	13136623	rs735689	T	C	5059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.160;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:198,250:0.56:448
chr12	13136729	rs2052329	G	T	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:136,109:0.44:245
chr12	13142174	rs850918	C	G	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	13153126	.	C	CGGCGGCAGGGCGGCAG	4144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DP=787;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=61.31;MQRankSum=11.404;QD=17.20;ReadPosRankSum=1.067;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:108,133:0.55:241
chr12	13153388	.	G	GGCAGCAGTCCAGCAGTGCAGCAGT	4360.73	.	AC=2;AF=1.00;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.28;QD=48.45;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	13153773	rs1291364	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	13154077	rs67498669	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	13154105	rs9919709	A	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	13154123	rs61912779	G	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	13154582	rs59113920	CG	C	4141.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	13154790	rs1291363	G	C	14598.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr12	13154911	rs1291362	A	G	22563.77	.	AC=2;AF=1.00;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	1/1:2,883:1.00:885
chr12	13155166	rs1291361	G	T	11234.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:1,432:1.00:433
chr12	13211212	rs6488582	G	A	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	13214537	rs3741818	A	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	13215685	rs2200498	C	A	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	13221606	rs1386005	T	C	8518.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr12	13248445	rs2291396	C	A	5352.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	13294280	rs7978768	C	A	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	13369196	rs8885	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	13526328	rs17821405	G	T	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:115,60:0.34:175
chr12	13529068	rs4763975	A	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	13529401	rs7957232	T	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	13716638	rs1806191	G	A	4103.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:303,217:0.42:520
chr12	13719859	rs3026159	A	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr12	13720264	rs61216234	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=1.023;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr12	13720272	rs4764010	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	13768354	rs1468845	C	T	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	13769664	rs1805199	T	C	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	14019157	rs12818068	C	T	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:180,146:0.45:326
chr12	14577892	rs2231909	A	T	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=-0.215;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:73,53:0.42:126
chr12	14579235	rs11055969	A	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.195;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.37;ReadPosRankSum=-1.426;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr12	14590981	rs10734876	T	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=23.67;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	14591220	rs4479040	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.229;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr12	14599904	rs5796595	C	CT	375.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.134;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-1.848;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:13,29:0.69:42
chr12	14628705	rs7298275	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	14634392	rs140044044	C	CAGTT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	14656768	rs1600	G	C	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:119,103:0.46:222
chr12	14664595	rs10846013	A	G	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	14688644	rs7957558	C	T	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr12	14689451	rs1345531	T	C	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	14694993	rs1862014	G	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	14720366	rs10846023	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	14720554	rs147342083	GGCA	G	14264.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:3,324:0.99:327
chr12	14720574	.	CAGA	C	1658	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=1;MGOF=23;MMLQ=24;MQ=60.28;NF=12;NR=76;PP=1658;QD=18.9545454545;SC=GCAGCAGCAGCAGAAGCGGTG;SbPval=0.5;Source=Platypus;TC=105;TCF=14;TCR=91;TR=88;WE=14720591;WS=14720564;set=Platypus	GT:AD:AF:DP	0/1:17,88:0.84:105
chr12	14720583	rs7954623	T	C	8825.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,341:1.00:342
chr12	14769468	rs1558795	G	A	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	14774849	rs7302418	T	A	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	14775214	rs2287538	T	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	14781503	rs4764105	A	T	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	14781678	rs3217210	G	GA	893.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.617;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:38,54:0.59:92
chr12	14794062	rs10772800	G	A	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	14804994	rs7313027	G	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	14822855	rs7314345	G	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	14827463	rs3217157	AATC	A	21441.73	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr12	14829893	rs1420635	A	C	7163.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	14834421	rs56944147	GA	G	18358.73	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr12	14834427	rs58911033	G	T	18497.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr12	14841126	rs76507201	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr12	14927825	rs6645	C	G	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:116,131:0.53:247
chr12	14928493	rs17761740	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	14947675	rs34868934	TA	T	794.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=3.272;QD=6.74;ReadPosRankSum=1.157;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:58,60:0.51:118
chr12	15034996	rs2430735	T	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	15067511	rs148149515	T	TGTGC	2310.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.84;MQRankSum=0.404;QD=21.01;ReadPosRankSum=0.000;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:5,105:0.95:110
chr12	15073831	rs2445382	G	C	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	15081897	rs2445371	A	C	10310.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr12	15091221	rs11432737	A	AT	7604.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=40.45;SOR=1.272;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	15095558	rs4703	C	G	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	15095707	rs10772822	T	C	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	15100684	rs7979291	C	T	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	15101034	rs71926892	G	GCGCGCACA	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.03;MQRankSum=0.366;QD=23.96;ReadPosRankSum=-1.465;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	15101072	rs4764142	T	G	356.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	15103605	rs2430711	A	G	8312.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr12	15131995	rs2233623	C	A	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	15273932	rs2247574	C	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:67,83:0.55:150
chr12	15273957	rs2247568	A	G	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:110,130:0.54:240
chr12	15650356	rs138770041	G	A	2455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.014;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:133,128:0.49:261
chr12	15652330	rs4764197	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	15656832	rs4764199	T	A	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=2.335;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chr12	15661441	rs888163	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr12	15677992	rs960666	A	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr12	15679120	rs6488782	C	A	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:153,125:0.45:278
chr12	15679208	rs7134888	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:83,48:0.37:131
chr12	15731724	rs5796639	T	TG	6149.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	15731744	rs1024843	C	T	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	15742313	rs34222753	GA	G	1159.52	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:13,81:0.86:94
chr12	15748020	rs1558787	C	T	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	15776223	.	TA	T	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-2.825;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:106,31:0.23:137
chr12	15803992	rs4237955	T	C	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	15818880	rs4363660	T	A	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	15822229	rs4237957	A	C	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	15822244	rs4237958	T	C	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	16036261	rs10734889	C	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	16050808	rs10772879	T	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	16055926	rs71042275	G	GT	1339.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	16185463	rs57961487	CTT	C	891.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,31:0.42:74
chr12	16189542	rs2290978	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.63;ReadPosRankSum=-1.617;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	16347308	rs3942536	G	A	3331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.903;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:184,176:0.49:360
chr12	16369828	rs1671511	A	T	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr12	16392545	rs11056836	C	T	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	16397677	rs1527014	G	A	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	16397746	rs1852451	C	T	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	16425423	rs1671483	C	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	16425656	rs1799516	A	T	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:86,78:0.48:164
chr12	16430284	rs1671487	G	A	12302.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr12	16430516	.	T	A	6403.77	.	AC=1;AF=0.500;AN=2;DP=573;set=Intersection	GT:AD:AF:DP	0/1:247,313:0.56:560
chr12	16510395	rs2075239	T	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr12	16516710	rs3759207	T	C	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:149,127:0.46:276
chr12	16529036	rs71054810	AT	A	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.711;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr12	16743165	rs2058798	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	16743217	rs2058799	A	G	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	16757757	rs74774526	A	C	3178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-1.968;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:223,169:0.43:392
chr12	17142546	rs7955087	T	C	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	18234422	rs11043839	C	A	3203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-2.787;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:160,161:0.50:321
chr12	18234461	rs11043840	T	A	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.834;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.269;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:59,31:0.34:90
chr12	18237688	rs6486881	C	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr12	18238804	rs112896269	GAGCCAC	G	583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=20.85;ReadPosRankSum=0.870;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr12	18243260	.	T	TA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=0.926;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr12	18435398	rs35277916	GCCC	G	3351.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:102,88:0.46:190
chr12	18435452	rs11044004	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr12	18499777	rs10770357	C	G	10306.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr12	18641326	rs7137852	T	C	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	18800989	rs67711384	CA	C	815.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.182;QD=19.90;ReadPosRankSum=-1.124;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr12	18801017	rs501379	T	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	18848131	rs1487070	T	C	166.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	18849071	rs3825081	G	C	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-2.062;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr12	18849256	rs149450833	CTATATATA	C	189.84	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	18854476	.	C	T	2032.77	.	AC=1;AF=0.500;AN=2;DP=272;set=Intersection	GT:AD:AF:DP	0/1:160,110:0.41:270
chr12	18854540	.	ATCCTCCTCCTCC	A,ATCC	6475.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=301;set=Intersection	GT:AF:DP	1/2:0.55,0.44:160
chr12	18889149	rs12300257	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr12	18889517	rs144525318	A	AAATTTGAG	828.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr12	18889547	rs10841080	C	A	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chr12	18889565	rs12306752	A	T	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr12	18890472	rs5796766	GT	G	1080.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	18891079	rs1075421	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr12	19282670	rs28512290	C	T	1744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-0.757;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:150,98:0.40:248
chr12	19283135	rs61913270	C	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr12	19406863	rs6486942	C	T	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	19410474	rs10706958	AT	A	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.006;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-1.512;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr12	19418874	rs7316780	C	T	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	19427764	rs76626801	T	C	7302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.53;ReadPosRankSum=0.669;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:188,186:0.50:374
chr12	19427764	.	TTA	CTG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=26;MQ=60.0;NF=48;NR=55;PP=2944;QD=20;SC=ATAGTCAATGTTAGCCTGGCA;SbPval=0.47;Source=Platypus;TC=207;TCF=93;TCR=114;TR=103;WE=19427774;WS=19427754;set=Platypus	GT:AD:AF:DP	1/0:104,103:0.50:207
chr12	19427766	rs77598867	A	G	7302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.321;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.27;ReadPosRankSum=0.360;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:189,190:0.50:379
chr12	19428009	rs2279537	T	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	19441011	rs34307661	CA	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=1.415;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr12	19441082	rs7960486	C	A	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:72,60:0.45:132
chr12	19500196	.	ACT	A	173.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	19500199	.	T	A	182.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	19512563	rs11044515	G	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	19519133	rs1344717	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr12	19522484	rs113006194	A	AAAAG	395.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	19522494	rs57357758	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	19592600	rs143333997	GGGA	G	5794.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	19593516	rs61914968	A	G	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr12	19626311	.	AT	A	1655.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.115;QD=41.39;ReadPosRankSum=-0.839;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:2,38:0.95:40
chr12	19626315	.	ATTT	A	1701.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.112;QD=40.52;ReadPosRankSum=-0.333;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr12	19626322	rs11044583	T	A	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=44.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	19626326	rs12370241	T	A	1711.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.110;QD=39.81;ReadPosRankSum=-0.029;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:2,41:0.95:43
chr12	19646943	rs66556640	CTGGTGTATTTCA	C	863.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	19873411	rs4301848	G	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	19873497	rs4369485	A	G	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	20522124	rs144106925	CGTGT	C,CGTGTGT	1391.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.56;MQRankSum=0.000;QD=17.84;ReadPosRankSum=0.472;SOR=1.005;set=HC	GT:AD:AF:DP	1/2:11,26,41:0.33,0.53:78
chr12	20522252	rs12305038	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:86,76:0.47:162
chr12	20709733	rs4762972	G	A	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	20724988	rs7966459	G	A	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.613;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:29,35:0.55:64
chr12	20766559	rs10743380	C	T	9789.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr12	20766685	rs7308381	G	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	20774464	rs10743381	A	G	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	20774539	rs10734705	A	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	20783099	rs7304499	A	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.88;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	20783099	.	AC	CC,CT	207	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=4;HapScore=3;MGOF=1;MMLQ=24;MQ=60.0;NF=6,5;NR=17,12;PP=29,207;QD=2.7726614151;SC=AATAATAAAAACGATGATAGT;SbPval=0.68;Source=Platypus;TC=24;TCF=7;TCR=17;TR=23,17;WE=20783108;WS=20783089;set=Platypus	GT:AF:DP	0/1:0.96:24
chr12	20783100	rs11045348	C	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=-0.952;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:9,27:0.75:36
chr12	20786787	rs4265636	T	C	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	20786841	rs10743382	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	20801855	rs9284155	C	T	825.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.125;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.57;ReadPosRankSum=-0.229;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:4,43:0.91:47
chr12	20803323	rs9804769	A	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	20803549	rs10743384	T	C	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	20864356	rs7963279	C	T	3810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=1.416;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:302,209:0.41:511
chr12	20893052	rs2037154	C	A	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	20893108	rs2271656	C	T	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	20893354	rs12368368	G	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	20903757	rs10841611	T	C	13800.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr12	20903865	rs10841612	G	A	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.430;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	20905250	rs6487138	C	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	20968828	rs10734710	C	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	21011480	rs4149117	T	G	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr12	21011581	rs4149118	G	A	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	21013948	rs3764009	C	T	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	21014139	rs3764008	C	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	21014163	rs3764007	T	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	21015610	rs1036261	A	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	21015760	rs7311358	G	A	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	21031020	rs2417938	A	G	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	21032242	rs4149142	T	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21036411	rs2053098	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	21051489	rs4149153	C	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21054369	rs3764006	G	A	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	21054918	rs2082518	T	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	21065235	rs142241896	TTTTATTTATTTATTTA	T	2774.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.87;QD=44.04;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	21065365	rs10841706	C	A	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=25.81;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	21069049	rs60571683	G	A	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	21168758	rs34168692	T	TA	89.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.75;ReadPosRankSum=1.465;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	21176135	rs1546308	T	C	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:2,292:0.99:294
chr12	21176247	rs1546307	A	G	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	21196424	rs11045676	T	A	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	21200089	rs11045681	A	G	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	21201544	rs34320144	GTA	G	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	21201572	rs11045687	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	21207389	rs11045699	T	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21207642	rs117717755	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr12	21317668	rs10444413	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	21317791	rs4149032	C	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	21317810	rs4149033	A	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	21317922	rs4149034	G	A	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	21327652	rs34728625	T	TA	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.439;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.459;QD=6.00;ReadPosRankSum=-0.578;SOR=1.858;set=HC	GT:AD:AF:DP	0/1:30,32:0.52:62
chr12	21329738	rs2306283	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr12	21329761	rs11045818	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr12	21329813	rs11045819	C	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr12	21331389	rs61760242	TTACTTG	T	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	21331599	rs4149057	T	C	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	21331625	rs2291075	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr12	21331987	rs2291076	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:39,30:0.43:69
chr12	21375061	rs11045873	T	A	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.08;ReadPosRankSum=2.148;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr12	21375061	.	TTG	ATC	613	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=13;NR=8;PP=613;QD=31.7365654696;SC=ATTATTATTATTGCTCAAGTG;SbPval=0.6;Source=Platypus;TC=31;TCF=19;TCR=12;TR=21;WE=21375071;WS=21375051;set=Platypus	GT:AD:AF:DP	1/0:10,21:0.68:31
chr12	21375063	rs11045874	G	C	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.14;ReadPosRankSum=1.275;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:20,27:0.57:47
chr12	21427608	rs3736080	G	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.83;ReadPosRankSum=-0.872;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	21450250	rs4148999	C	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:69,52:0.43:121
chr12	21457514	rs3833795	TA	T	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:47,30:0.39:77
chr12	21487544	rs10841795	A	G	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-0.434;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,66:0.46:143
chr12	21526318	.	TG	T	5308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.963;QD=16.69;ReadPosRankSum=1.912;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:155,163:0.51:318
chr12	21590621	rs2058464	T	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	21590788	rs2110165	C	A	14057.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.554;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=0.019;SOR=0.328;set=HC	GT:AD:AF:DP	1/1:1,556:1.00:557
chr12	21593404	rs4762702	G	C	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	21602792	rs71537701	CTTTTTTTTTTTT	C	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	21605157	rs3759229	A	C	93.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	21608891	rs2302500	T	C	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	21609127	rs4367993	T	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	21609180	rs11046066	T	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.99;ReadPosRankSum=0.898;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	21609222	rs4388943	G	T	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	21609684	rs55861860	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	21609733	rs7964140	A	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	21609761	rs34335650	C	CAACT	3559.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	21609773	rs7964152	A	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr12	21609907	rs7964568	G	A	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	21609936	rs68030467	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr12	21614141	rs151311552	CAATTT	C	1223.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	21615664	rs3782660	T	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	21615917	rs34595378	C	CAG	1746.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.60;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	21615935	rs10841819	A	T	336.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.183;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=2.007;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr12	21621419	rs11046075	C	A	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:76,91:0.54:167
chr12	21621737	rs61926324	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr12	21623179	rs61754415	T	C	2379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=50.74;MQRankSum=-1.991;QD=10.39;ReadPosRankSum=1.939;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:109,120:0.52:229
chr12	21623284	.	C	CA	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.500;MQ=52.47;MQRankSum=-3.112;QD=2.55;ReadPosRankSum=0.231;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:47,25:0.35:72
chr12	21623969	rs6500	A	G	2798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-1.232;QD=10.10;ReadPosRankSum=-0.320;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:130,147:0.53:277
chr12	21624308	rs56736899	TA	T	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=2.922;QD=3.48;ReadPosRankSum=-0.163;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr12	21626324	rs917852	A	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	21626330	rs917853	C	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.29;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21627672	rs35159698	C	G	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21628320	rs10841831	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	21628336	rs10841832	G	A	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	21628791	rs3752648	T	C	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	21628812	rs10160843	G	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	21629987	rs917854	T	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	21629993	rs5796903	A	AC	1742.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	21639528	rs10712738	GA	G	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=8.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.798;SOR=1.757;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr12	21639591	rs7964104	G	C	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	21654831	rs1060126	G	T	9725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.760;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-1.828;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:411,488:0.54:899
chr12	21655029	rs11046087	G	T	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr12	21659973	rs16923862	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr12	21661508	rs11046091	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	21665207	rs61926342	A	G	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=0.727;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:57,57:0.50:114
chr12	21679652	rs10564739	CTT	C	609.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr12	21680609	rs7966780	C	G	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	21684029	rs3765093	G	A	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	21693243	rs1871129	AT	TA	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	21695584	rs3741841	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr12	21727315	rs7963756	C	A	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	21733121	rs2126887	T	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	21757272	rs153944	A	G	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	21789968	rs1677134	G	T	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	21791272	rs1650289	T	C	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	21791410	rs71053332	TA	T	986.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.94;MQRankSum=0.773;QD=13.70;ReadPosRankSum=1.113;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:4,68:0.94:72
chr12	21791455	rs1427830	A	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=24.64;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	21794865	rs1626023	A	T	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	21796814	rs4762862	G	A	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	21797029	rs1650294	A	G	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr12	21799999	rs1540405	G	C	12949.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr12	21807432	rs1677078	T	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	21807640	rs1650315	G	A	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	21807687	rs7953579	C	G	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	21958998	.	C	CA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.38;ReadPosRankSum=3.146;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:284,57:0.17:341
chr12	21995555	rs1643235	C	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	22005003	rs2307024	T	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr12	22005510	rs704183	A	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	22014161	rs2418018	C	A	51.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	22014163	rs2418019	C	T	51.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	22016004	rs4148670	GA	G	746.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.699;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:24,50:0.68:74
chr12	22017422	rs697250	A	G	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	22017486	rs697251	C	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	22035873	rs1356368	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,35:0.40:88
chr12	22035883	rs1283802	T	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,40:0.56:71
chr12	22047151	rs704216	G	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	22047174	rs704217	C	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	22063115	rs10770865	A	G	13429.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,514:1.00:514
chr12	22063251	rs35857705	CA	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.267;QD=1.33;ReadPosRankSum=-0.260;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:163,56:0.26:219
chr12	22063337	rs4148656	A	G	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	22063737	rs4762719	G	T	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	22063749	rs4762720	T	C	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	22063971	rs4148654	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	22065699	rs3835048	G	GA	224.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	22068849	rs3759236	G	T	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	22078245	rs2900493	G	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	22078556	rs2277404	T	C	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=1.849;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr12	22078571	rs2176394	T	A	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	22078838	rs2277405	T	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	22086976	rs6487252	A	C	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	22089348	rs4586220	G	A	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	22215194	rs375987416	CT	C	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.699;QD=3.38;ReadPosRankSum=0.850;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:47,44:0.48:91
chr12	22354921	rs704219	A	G	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	22439322	rs3819878	T	C	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.547;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:70,72:0.51:142
chr12	22439467	rs3819879	T	G	1986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=1.048;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:132,104:0.44:236
chr12	22478425	rs4762904	A	G	6747.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr12	22478698	rs4762905	C	A	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	22489150	rs3809202	A	G	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:116,116:0.50:232
chr12	22602796	rs2063573	A	G	12944.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,512:1.00:512
chr12	22606738	rs12424580	G	C	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	22625135	.	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=3.450;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr12	22671147	rs139364979	C	T	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:58,93:0.62:151
chr12	22778701	rs2271098	C	G	13615.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr12	22796994	rs11429701	A	AT	4740.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	22814036	rs4963793	A	G	3824.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:149,188:0.56:337
chr12	23689301	rs4636755	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr12	23696116	rs7485662	C	T	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:160,113:0.41:273
chr12	23737664	rs34653390	AGT	A	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr12	23893898	.	T	A	2144.77	.	AC=1;AF=0.500;AN=2;DP=240;set=Intersection	GT:AD:AF:DP	0/1:121,112:0.48:233
chr12	23915547	rs71059921	G	GA	815.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=-0.611;SOR=0.483;set=HC	GT:AD:AF:DP	1/1:5,47:0.90:52
chr12	23998888	rs7980561	T	C	4024.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:177,192:0.52:369
chr12	24102565	.	A	C	4088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DP=523;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.761;QD=7.95;ReadPosRankSum=1.221;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:290,224:0.44:514
chr12	24102665	rs141363242	CCT	C	1178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.504;QD=16.60;ReadPosRankSum=0.410;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:25,46:0.65:71
chr12	24102700	.	GTCTCTC	G	611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=19.73;ReadPosRankSum=-0.369;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr12	24103911	rs35800209	GCA	G	459.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr12	25031449	rs6487436	A	G	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.203;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.798;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:102,101:0.50:203
chr12	25054891	rs2291894	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr12	25147300	rs699030	G	C	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	25148755	rs864161	C	G	15454.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,611:1.00:611
chr12	25242595	rs7969931	C	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	25242776	rs10743538	C	T	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.05;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	25243115	rs1908946	G	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:82,68:0.45:150
chr12	25249743	rs10842464	T	C	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	25249785	rs10771166	T	C	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr12	25253984	rs11047834	A	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	25254975	rs7303889	A	C	7659.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr12	25255034	rs10842467	C	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr12	25257166	rs12828225	T	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr12	25257182	rs34133737	GA	G	602.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	25261735	rs859146	G	T	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	25261759	.	T	TAAAAAAAAAAAAAA	88.50	.	AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.50;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	25272027	rs2291365	A	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr12	25274593	rs2220195	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	25276351	rs3830289	TGCTCTACC	T	5454.73	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:187,146:0.44:333
chr12	25297713	rs7971062	C	T	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	25299921	rs11047863	G	A	11615.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr12	25302481	rs10842485	T	C	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	25311333	rs12367971	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	25311489	rs10842496	G	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-2.347;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr12	25343516	rs10842501	C	T	360.88	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr12	25343707	rs10842502	C	T	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr12	25362217	rs9266	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr12	25362777	rs1137282	A	G	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr12	25368462	rs4362222	C	T	10231.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.30;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr12	25368593	.	AT	A	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.979;QD=0.86;ReadPosRankSum=-1.191;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:97,26:0.21:123
chr12	25388290	rs7133635	G	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr12	25388316	rs7133640	G	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr12	25671759	rs1479500	T	A	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	25673073	.	GATATAC	G	133.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	25673075	rs63213562	TATAC	T	96.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	25679932	rs1705419	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	25699523	rs278990	A	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	26231843	rs7133685	G	T	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	26231898	rs4963952	G	A	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	26275555	rs11048413	G	A	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	26275571	.	GGCCGCCGCCGCT	G	2518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.083;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.32;ReadPosRankSum=2.917;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:44,64:0.59:108
chr12	26492555	rs34679762	A	AT	622.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	26551649	rs17470625	A	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.07;ReadPosRankSum=0.852;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	26580814	rs1818135	T	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr12	26596618	rs2220406	C	T	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:93,86:0.48:179
chr12	26639346	rs36049222	T	TA	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.88;MQRankSum=2.294;QD=7.95;ReadPosRankSum=0.272;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	26703459	rs11048575	T	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.126;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	26709489	.	AT	A	78	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=12;HapScore=4;MGOF=14;MMLQ=27;MQ=59.46;NF=0;NR=6;PP=78;QD=14.5;SC=CTGGGTCTCTATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=13;TCF=1;TCR=12;TR=6;WE=26709505;WS=26709479;set=Platypus	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	26709497	.	T	TTGTG	71	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=10;HapScore=4;MGOF=14;MMLQ=28;MQ=59.27;NF=0;NR=6;PP=71;QD=13.3333333333;SC=CTATTTTTTTTTTTGTGTGTG;SbPval=1.0;Source=Platypus;TC=11;TCF=1;TCR=10;TR=6;WE=26709505;WS=26709479;set=Platypus	GT:AD:AF:DP	1/0:5,6:0.55:11
chr12	26714768	.	C	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DP=620;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-1.120;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:529,88:0.14:617
chr12	26732987	rs2230376	G	A	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	26733062	rs2230375	T	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	26749831	rs2230377	G	A	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	26752897	rs12832680	C	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	26755546	rs3736185	C	T	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	26784850	rs2230372	G	A	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:239,197:0.45:436
chr12	26807065	.	T	TA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.91;MQRankSum=2.670;QD=4.95;ReadPosRankSum=0.552;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr12	26809177	rs2880877	C	T	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr12	26810777	rs2291264	T	C	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:168,186:0.53:354
chr12	26816496	rs1375656	T	C	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-0.306;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:24,33:0.58:57
chr12	26819095	.	A	ATAGATAGATAGAT	1959	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=9;HapScore=1;MGOF=44;MMLQ=27;MQ=56.9;NF=0;NR=6;PP=1959;QD=327.833333333;SC=AGATAGATAGATTTTTTTTTA;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=6;WE=26819103;WS=26819085;set=Platypus	GT:AD:AF:DP	1/1:5,6:0.55:11
chr12	26834804	rs111626763	T	TACTC	2126.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr12	26834858	rs2230384	G	A	4876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.733;QD=11.37;ReadPosRankSum=-0.971;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:183,246:0.57:429
chr12	26848663	rs3830260	A	AT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-0.385;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	26868322	rs1900941	T	C	9064.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr12	26869047	rs12812095	C	T	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	26869233	rs7957289	C	T	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	26874138	rs11407207	G	GT	724.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.349;QD=18.58;ReadPosRankSum=-1.501;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr12	26875235	rs2291262	A	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	26875565	rs2291261	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	26943170	rs7314747	A	T	12027.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr12	26985537	rs11048706	G	C	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	26985807	rs11048708	T	G	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	27058563	rs7397665	A	G	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	27059224	rs1488052	G	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	27081566	rs2029309	C	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	27087703	rs708158	T	C	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	27117382	rs11048788	G	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.78;ReadPosRankSum=0.243;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	27132691	rs143662680	C	CA	1617.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:147,84:0.36:231
chr12	27143508	rs10771314	G	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:92,76:0.45:168
chr12	27152666	rs7314394	T	C	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	27175494	rs3963548	T	C	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	27175640	rs1872191	A	G	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	27175669	rs117322672	T	C	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:130,73:0.36:203
chr12	27183055	rs144222775	G	GTT	575.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr12	27234200	rs708165	T	C	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:170,151:0.47:321
chr12	27234878	rs74075111	G	A	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.632;QD=7.94;ReadPosRankSum=0.931;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:55,41:0.43:96
chr12	27234914	rs61741737	G	A	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.776;QD=6.69;ReadPosRankSum=-2.492;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:84,53:0.39:137
chr12	27234999	rs708167	T	C	2318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-4.021;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:100,110:0.52:210
chr12	27235279	rs12228215	G	A	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,85:0.52:163
chr12	27300420	rs841618	T	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	27461984	rs6487599	T	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	27470682	rs2242185	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	27470866	rs6487601	G	A	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,189:0.99:191
chr12	27486167	rs71524340	G	C	70.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.205;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=-1.763;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	27486168	rs62758860	GA	G	388.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	27529219	rs4964059	A	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr12	27533367	rs4964060	A	G	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:152,131:0.46:283
chr12	27553741	rs1037920	A	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	27623433	rs35052632	G	GT	259.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr12	27623490	rs776199	A	G	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	27625823	rs386428	A	T	3099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=0.715;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:235,175:0.43:410
chr12	27625879	rs381905	G	A	3880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-1.494;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:152,108:0.42:260
chr12	27625887	rs401739	T	C	3820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.61;ReadPosRankSum=-2.664;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:129,101:0.44:230
chr12	27627805	rs411816	G	A	2437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-0.694;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:141,125:0.47:266
chr12	27800576	rs34792131	C	CT	1190.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:49,64:0.57:113
chr12	27800746	rs2194816	G	T	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	27802932	rs17224002	A	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-0.000;QD=9.48;ReadPosRankSum=0.541;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	27807906	rs7979973	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr12	27813754	rs7132997	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	27813903	rs7133222	C	T	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	27813961	rs7133231	A	G	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	27813973	rs7133328	C	T	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	27813981	rs7133545	G	C	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	27814085	rs6487629	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	27820302	rs2033024	C	T	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	27826780	rs2052673	T	G	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-1.696;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:85,59:0.41:144
chr12	27832308	rs10743607	G	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	27832347	rs11049093	C	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr12	27841925	rs35617482	C	CT	659.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=1.769;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:88,51:0.37:139
chr12	27845924	rs3764010	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr12	27849795	rs929948	C	T	2243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=2.985;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:121,111:0.48:232
chr12	27849795	.	CA	TG	969	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=26;MQ=60.0;NF=30;NR=41;PP=969;QD=14.400955984;SC=TTTGGGGATCCAACAAGCAAA;SbPval=0.5;Source=Platypus;TC=142;TCF=59;TCR=83;TR=71;WE=27849804;WS=27849785;set=Platypus	GT:AD:AF:DP	0/1:71,71:0.50:142
chr12	27849796	rs929949	A	G	8181.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.42;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	27850113	rs12819160	A	T	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:65,72:0.53:137
chr12	27867706	rs11049106	C	T	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.25;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	27867727	rs1127787	G	A	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.424;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:93,90:0.49:183
chr12	27878475	rs61915366	G	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-2.238;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:21,24:0.53:45
chr12	27915718	rs10842975	A	T	7138.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr12	27919491	rs9668702	T	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	27950067	.	C	CAAA	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.919;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr12	28336969	rs71438734	T	TAAATGCAAAAAGAAATGAA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=1.517;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr12	28412398	rs7969414	G	T	964.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.609;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=4.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.628;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:129,60:0.32:189
chr12	28412415	rs11049489	T	C	1355.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:87,82:0.49:169
chr12	28457618	rs6487674	A	C	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	28459652	.	A	AT	726.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=0.864;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:72,51:0.41:123
chr12	28544464	rs3741760	G	A	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr12	28605426	rs10771427	G	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.038;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr12	28724216	rs6487691	T	C	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:129,126:0.49:255
chr12	28726042	rs6487692	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=0.833;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr12	28732873	rs61207045	CA	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.689;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.754;QD=3.98;ReadPosRankSum=0.327;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr12	29423460	rs2216854	G	A	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:141,106:0.43:247
chr12	29423583	rs2194519	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr12	29444284	rs7972032	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:78,65:0.45:143
chr12	29446477	rs10679359	T	TA	502.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:78,40:0.34:118
chr12	29462224	rs6487807	C	G	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-0.781;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:61,51:0.46:112
chr12	29485449	rs10743656	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr12	29486745	rs1052583	T	C	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:75,51:0.40:126
chr12	29496224	rs3782511	G	A	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:122,75:0.38:197
chr12	29502236	rs3764953	T	C	43.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	29519980	.	CAA	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.34;ReadPosRankSum=0.648;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	29524365	rs3214493	TA	T	1813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.038;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:60,64:0.52:124
chr12	29580751	rs7301354	A	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr12	29586810	rs148996239	CA	C	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.254;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:24,28:0.54:52
chr12	29593769	rs2304458	A	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	29596365	rs78265994	T	C	2413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.444;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:145,127:0.47:272
chr12	29604392	rs1347570	C	G	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:79,87:0.52:166
chr12	29607931	rs2060570	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr12	29608361	rs11050237	T	A	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:106,115:0.52:221
chr12	29614709	rs73278740	A	G	6280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.277;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:239,311:0.57:550
chr12	29617550	rs11050243	G	A	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:208,184:0.47:392
chr12	29617736	rs3741751	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr12	29618027	rs17660557	A	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:68,89:0.57:157
chr12	29618273	rs10771537	G	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr12	29625929	rs7306407	T	C	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:43,53:0.55:96
chr12	29626054	rs11453988	A	AT	610.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.911;QD=11.98;ReadPosRankSum=0.486;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:22,29:0.57:51
chr12	29626201	rs7138552	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	29628016	rs2043623	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:71,54:0.43:125
chr12	29630081	rs7975356	G	A	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:197,211:0.52:408
chr12	29639186	rs3847680	T	C	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:170,190:0.53:360
chr12	29642542	rs967182	C	T	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:56,57:0.50:113
chr12	29642573	rs967181	A	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr12	29648275	rs10843438	G	A	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:113,112:0.50:225
chr12	29649155	rs73069554	A	G	1960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.670;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:100,103:0.51:203
chr12	29650361	rs10771544	A	C	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr12	29650702	rs822879	C	T	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	29667659	rs299438	G	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	29667680	rs299437	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	29721945	rs2254945	C	T	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	29813709	rs144268878	GTA	G	34.71	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	29819161	rs11395199	C	CT	1291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=1.376;QD=9.86;ReadPosRankSum=1.631;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:37,94:0.72:131
chr12	29921074	rs302316	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	29936613	rs184221	T	G	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.88;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	29936626	rs654825	C	A	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	30783743	rs2278558	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr12	30814043	rs67741303	CTATTA	C	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr12	30814259	rs10771753	C	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:72,49:0.40:121
chr12	30815157	rs2118780	A	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr12	30818081	rs10843807	A	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	30822240	rs7955420	C	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=5.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-1.557;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:51,37:0.42:88
chr12	30823971	rs1054426	A	G	4225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=1.825;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:181,214:0.54:395
chr12	30827086	rs2289301	G	C	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.28;ReadPosRankSum=0.549;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr12	30841285	rs12809355	G	C	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=0.682;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:64,61:0.49:125
chr12	30843377	rs2289302	T	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr12	30848675	rs12809335	C	T	7598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=0.575;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:380,384:0.50:764
chr12	30867794	rs10843820	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr12	30868002	rs13656	C	T	3421.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:198,178:0.47:376
chr12	30877391	rs7299800	G	T	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr12	30878859	rs7304879	G	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	30879088	rs10843822	T	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:45,68:0.60:113
chr12	30881488	rs11406794	C	CA	448.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.037;QD=5.83;ReadPosRankSum=1.966;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:38,39:0.51:77
chr12	30881809	rs2304630	T	C	4047.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:142,198:0.58:340
chr12	30888001	rs12146709	T	C	6828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=1.278;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:268,347:0.56:615
chr12	30893875	rs10771762	T	C	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,57:0.50:115
chr12	30948848	rs256653	G	C	5741.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:201,270:0.57:471
chr12	30949206	rs256654	A	G	2646.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:94,126:0.57:220
chr12	31131712	rs35097	T	C	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	31132479	rs35096	A	C	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	31135418	rs2075332	C	A	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:141,155:0.52:296
chr12	31135478	rs35089	T	C	9992.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr12	31135579	rs2075333	T	C	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:95,118:0.55:213
chr12	31135905	rs888473	A	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	31136256	rs35088	C	T	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:92,81:0.47:173
chr12	31144884	rs35076	A	G	18160.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr12	31244703	rs374684190	C	T	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.774;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.500;MQ=50.69;MQRankSum=-15.860;QD=1.79;ReadPosRankSum=-0.529;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:586,136:0.19:722
chr12	31247682	rs61917225	T	C	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=9.997;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-2.759;QD=3.59;ReadPosRankSum=3.182;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:279,99:0.26:378
chr12	31256025	.	G	A	1491.77	.	AC=1;AF=0.500;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	0/1:47,71:0.60:118
chr12	31256905	rs1046458	T	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-6.107;QD=5.07;ReadPosRankSum=-0.104;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr12	31285101	rs2933405	A	G	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	31285169	rs2287449	A	T	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	31286189	rs3844571	T	C	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.28;QD=26.01;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	31288835	rs200865477	G	GA	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.80;QD=29.40;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	31288884	rs4931444	G	T	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.87;QD=27.78;SOR=1.516;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	31288955	rs11051266	G	A	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:4,195:0.98:199
chr12	31297722	rs55758709	C	T	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.62;QD=26.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	31297871	rs12309295	G	C	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr12	31298250	rs115596083	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.09;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	31300754	rs116358569	T	C	4391.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.62;MQRankSum=-1.114;QD=24.95;ReadPosRankSum=-0.901;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:2,174:0.99:176
chr12	31300891	rs56144986	C	A	8685.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.63;QD=26.08;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr12	31301888	rs11051274	T	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=25.07;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	31307173	rs4931449	A	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	31310983	rs7971718	G	A	2741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.344;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-2.530;QD=8.76;ReadPosRankSum=0.194;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:168,145:0.46:313
chr12	31311973	rs61733843	G	A	1799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=52.72;MQRankSum=-0.328;QD=9.47;ReadPosRankSum=0.133;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:100,90:0.47:190
chr12	31359083	rs61917095	C	T	2718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-1.446;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:175,144:0.45:319
chr12	31359210	rs2164498	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr12	31539122	rs3741877	A	G	2526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.275;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=1.496;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:118,136:0.54:254
chr12	31542191	rs10843937	A	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr12	31545103	rs708218	T	C	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=-1.498;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr12	31545381	rs792874	A	G	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:108,107:0.50:215
chr12	31545682	rs7975761	A	G	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:130,141:0.52:271
chr12	31551350	rs1798769	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr12	31568221	rs793159	C	T	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:85,79:0.48:164
chr12	31600400	rs7976644	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	31632449	rs3741878	T	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr12	31633258	rs113784337	G	GT	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr12	31648723	rs4931506	G	A	2665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.295;QD=10.97;ReadPosRankSum=-0.102;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:110,133:0.55:243
chr12	31648728	rs143241018	GA	G	2076.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.345;QD=8.31;ReadPosRankSum=0.732;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:118,132:0.53:250
chr12	31648826	rs4930979	C	T	2237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.379;QD=10.22;ReadPosRankSum=-0.351;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:106,113:0.52:219
chr12	31648948	rs4931507	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.31;ReadPosRankSum=-0.847;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	31693814	rs1262391	A	G	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr12	31693975	rs34225458	T	TA,TAA	3256.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.643;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.123;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.298;QD=18.61;ReadPosRankSum=-0.705;SOR=0.533;set=HC	GT:AD:AF:DP	1/2:12,129,34:0.74,0.19:175
chr12	31814741	rs7959989	G	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	31820564	rs201646763	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.160;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr12	31908050	rs6488005	A	C	26581.77	.	AC=2;AF=1.00;AN=2;DB;DP=1032;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,1030:1.00:1030
chr12	31944691	rs3759294	A	C	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:274,205:0.43:479
chr12	32134064	rs7298803	A	G	4943.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:376,262:0.41:638
chr12	32134240	rs2388982	C	T	5651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-0.475;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:356,286:0.45:642
chr12	32134638	rs2166807	T	C	4793.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:195,227:0.54:422
chr12	32134943	rs10771894	A	G	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:171,128:0.43:299
chr12	32135441	rs3759301	T	C	9536.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr12	32135938	rs11051718	A	G	4338.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:316,235:0.43:551
chr12	32137512	rs3759299	C	G	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:173,131:0.43:304
chr12	32138410	rs12827942	A	G	4272.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:338,236:0.41:574
chr12	32138924	rs7302975	T	C	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:70,65:0.48:135
chr12	32138974	rs35804480	CT	C	395.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	32261435	rs1144715	A	G	84.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	32459070	rs41521147	T	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr12	32481093	rs3748275	G	C	8277.77	.	AC=1;AF=0.500;AN=2;DB;DP=911;set=Intersection	GT:AD:AF:DP	0/1:473,420:0.47:893
chr12	32481577	rs3748276	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	32487644	rs10844188	T	A	1538.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:120,82:0.41:202
chr12	32490348	rs2388988	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr12	32490369	rs2388987	G	A	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=-0.063;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr12	32490375	rs4604975	C	G	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.278;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.64;ReadPosRankSum=0.529;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr12	32490764	rs2270786	G	A	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.802;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:74,71:0.49:145
chr12	32490849	rs7309590	GC	AG	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.317;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.26;ReadPosRankSum=0.913;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr12	32520416	rs11351681	GA	G	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.61;ReadPosRankSum=1.473;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	32530257	rs7298381	G	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	32530385	rs7298319	C	G	5502.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:338,283:0.46:621
chr12	32552769	rs2651369	C	G	3508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-0.478;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:217,182:0.46:399
chr12	32639156	rs6488061	C	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr12	32716948	rs371242429	GGGGAGA	G	421.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr12	32716988	rs61926167	T	A	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.244;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.578;QD=10.13;ReadPosRankSum=-2.367;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:37,40:0.52:77
chr12	32735236	rs904582	C	T	8145.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr12	32753219	rs10844251	C	T	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	32753518	.	C	CTTT	211.80	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	32753522	rs41276674	C	T	222.84	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	32753526	rs3862407	C	T	214.79	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.68;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	32755058	rs4931641	T	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.80;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	32763668	rs1004969	G	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr12	32764184	rs10844253	G	A	3669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.035;QD=9.04;ReadPosRankSum=-1.035;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:211,195:0.48:406
chr12	32772620	rs73083501	C	T	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:121,94:0.44:215
chr12	32777362	rs11052110	G	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=1.207;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr12	32777416	rs10700807	C	CT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=1.094;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr12	32777889	rs17539792	T	G	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr12	32778039	rs7970584	A	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr12	32778581	rs11052113	T	C	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=4.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.735;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:96,70:0.42:166
chr12	32778742	rs17539848	T	G	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:156,133:0.46:289
chr12	32786700	rs59572242	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-1.617;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr12	32791796	rs4575368	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,58:0.40:145
chr12	32793164	rs74073032	A	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:110,85:0.44:195
chr12	32793315	rs61753359	G	A	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:93,123:0.57:216
chr12	32854200	rs11052192	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	32854366	rs10844308	A	C	1802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-1.014;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:97,94:0.49:191
chr12	32854602	rs9737752	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	32859757	rs10844309	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr12	32860302	rs2272238	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr12	32863824	rs11052197	T	C	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=1.299;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr12	32866399	rs7971495	G	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.98;ReadPosRankSum=-1.221;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr12	32866403	rs7958074	T	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.86;ReadPosRankSum=-0.812;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	32871481	rs10844314	G	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.762;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=9.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.079;SOR=0.032;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	32875406	rs10844318	A	G	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-1.115;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:28,52:0.65:80
chr12	32884187	rs138148657	AAAAAGCATTTTTCATG	A	558.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr12	32884741	rs144761384	A	AAAAAAAC	752.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.81;ReadPosRankSum=0.602;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr12	32890161	rs7302970	C	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr12	32890685	rs2177704	C	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	32890912	rs4506737	T	A	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	32896365	rs1059422	GA	CT	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;JOINED;set=Intersection	GT:AD:AF:DP	0/1:64,58:0.48:122
chr12	32897557	rs11052213	G	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr12	32897586	rs10844336	G	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr12	32897647	.	C	CA	1146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.623;QD=5.07;ReadPosRankSum=-0.669;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:132,94:0.42:226
chr12	32905674	rs56907654	CAAAAAA	C	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.39;ReadPosRankSum=0.339;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr12	32908237	rs11539445	C	T,A	19976.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=887;set=Intersection	GT:AF:DP	1/2:0.43,0.57:875
chr12	32908518	rs11539444	G	A	7634.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:385,381:0.50:766
chr12	32945495	rs7956824	C	T	5973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0.000;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-0.698;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:467,327:0.41:794
chr12	32945721	rs6488091	G	T	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr12	32945769	rs6488092	G	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr12	32955647	rs7975824	C	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-1.827;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	32974245	rs10772008	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr12	33021934	rs1046116	A	G	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:112,89:0.44:201
chr12	33030893	.	A	G	3296.77	.	AC=1;AF=0.500;AN=2;DP=352;set=Intersection	GT:AD:AF:DP	0/1:181,168:0.48:349
chr12	33049781	rs187291890	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	33535510	rs74075211	T	G	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	33576990	rs7980799	A	C	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	33578997	rs141090671	TCA	T	174.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:43,13:0.23:56
chr12	33579034	rs10844595	C	T	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.409;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:54,53:0.50:107
chr12	33579297	rs11052695	C	G	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:153,115:0.43:268
chr12	33579408	rs10844596	A	T	1285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.893;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:115,74:0.39:189
chr12	33592545	rs76345615	C	T	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.335;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:92,70:0.43:162
chr12	34175794	rs11831435	T	C	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr12	34176796	rs7308242	A	G	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:98,57:0.37:155
chr12	34179157	rs78273253	C	T	4811.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:321,245:0.43:566
chr12	34182460	rs113101586	A	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr12	38711020	rs11183276	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	38712142	rs6582584	C	G	24655.77	.	AC=2;AF=1.00;AN=2;DB;DP=972;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.31;QD=25.52;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,966:1.00:966
chr12	38715000	rs35518352	A	G	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;MQ=59.86;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr12	38717678	rs6582607	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.76;QD=26.64;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	39087609	rs3759139	G	A	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:167,206:0.55:373
chr12	39087687	rs826877	A	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:52,76:0.59:128
chr12	39096664	rs7960616	T	A	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.677;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr12	39117384	rs844115	C	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr12	39124173	rs5797589	G	GA	562.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr12	39154492	rs12300353	G	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr12	39233771	rs3803020	A	G	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=0.466;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr12	40001547	.	G	GT	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.215;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr12	40037727	rs10735878	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	40077028	rs10047563	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	40077844	.	A	G	405.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr12	40085906	rs73270414	A	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr12	40345185	rs11446411	G	GA	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=1.778;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr12	40442111	rs10878036	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.652;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=4.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=0.367;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	40499639	rs7305766	G	T	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	40619082	rs2256408	G	A	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	40619301	rs2723273	G	A	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	40619542	rs2256286	A	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	40626230	rs1352879	T	C	7893.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr12	40626285	rs1352878	C	T	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	40631791	rs10878245	T	C	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	40645257	rs7955902	C	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr12	40657537	rs10784461	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	40657771	rs10784462	C	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	40681142	rs138343113	C	CT	3234.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	40696533	.	AT	A	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.431;QD=16.73;ReadPosRankSum=1.758;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	40702846	rs7305344	A	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.73;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	40703087	rs10650388	C	CGT	1059.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:11,48:0.81:59
chr12	40708922	rs1427266	C	T	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	40709185	rs721713	A	G	6007.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	40713759	rs1896252	T	C	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	40713834	rs1427263	C	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	40713873	rs11176013	A	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	40713901	rs11564148	T	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.710;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr12	40714009	rs11564205	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.64;ReadPosRankSum=-0.000;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	40714785	rs10878368	A	T	8870.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr12	40715013	rs7307276	T	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	40716015	rs7137665	C	T	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	40716037	.	T	TA	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.490;QD=1.99;ReadPosRankSum=-0.403;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:134,46:0.26:180
chr12	40716260	rs10878371	T	C	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	40742254	rs10878405	G	A	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-0.069;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:29,26:0.47:55
chr12	40753044	rs111612315	C	CT	242.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=0.813;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr12	40753303	rs3789330	A	G	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	40757114	rs10626458	A	ACATG	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	40757186	rs11317573	AT	A	1696.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	40757330	rs33962975	A	G	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:111,77:0.41:188
chr12	40758652	rs3761863	T	C	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	40761007	rs3789328	A	G	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	40761358	rs4768238	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	40787385	rs7968721	C	A	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	40793993	rs1820544	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-0.381;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	40799969	rs10784595	C	T	3428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.973;QD=18.74;ReadPosRankSum=1.873;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:93,90:0.49:183
chr12	40799975	rs10784596	G	C	3530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-1.023;QD=19.62;ReadPosRankSum=0.507;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:87,93:0.52:180
chr12	40802150	rs1019709	G	A	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:103,128:0.55:231
chr12	40805209	rs78703257	G	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.35;ReadPosRankSum=-0.126;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	40805948	rs10878538	G	C	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:73,92:0.56:165
chr12	40808832	rs994798	A	G	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:83,68:0.45:151
chr12	40812123	rs10878551	C	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.96;ReadPosRankSum=-0.189;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	40815548	rs6581732	T	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	40820208	rs11176575	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr12	40821176	rs7955308	G	A	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.69;QD=26.20;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	40821736	rs17444896	A	G	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr12	40821867	rs7958987	G	A	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:206,143:0.41:349
chr12	40822012	rs7960062	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	40827479	rs2162470	T	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr12	40830599	.	CGTGTGTGTGT	C,CGT	2918.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=105;set=Intersection	GT:AF:DP	1/2:0.20,0.79:76
chr12	40832126	rs10878584	C	T	8354.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr12	40832161	rs11176635	T	C	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	40834376	rs10878592	C	G	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	40834955	rs10784618	C	A	9711.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr12	40835596	rs4768263	T	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.26;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	40835734	rs7966110	C	G	7739.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	40835786	rs4768264	G	A	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-0.115;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:105,98:0.48:203
chr12	40836947	rs11564231	C	T	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=1.149;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:58,49:0.46:107
chr12	40837049	rs11564165	A	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,56:0.63:89
chr12	40837331	rs11564228	G	A	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.42;ReadPosRankSum=0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	40838146	rs10784620	A	T	10398.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr12	40838216	rs10784621	T	C	7612.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr12	40839467	rs7972395	A	G	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	40839521	rs1346307	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	40840325	rs10878597	T	C	14414.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr12	40841781	rs1820547	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=25.10;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	40841938	rs11176682	G	T	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.264;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:36,30:0.45:66
chr12	40843506	rs78223471	CT	C	912.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr12	40844667	rs10784623	A	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	40852398	rs1035811	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.84;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	40854265	rs78417680	A	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr12	40857126	rs144249723	TAAGTA	T	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	40857214	rs10878623	T	C	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	40857943	rs2933353	A	C	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	40858122	rs12228358	G	T	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.896;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:53,43:0.45:96
chr12	40858454	rs1492332	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.62;ReadPosRankSum=-2.509;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	40859036	rs2131202	C	T	7576.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr12	40859551	rs2131203	T	A	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	40868529	rs35850095	C	T	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:108,102:0.49:210
chr12	40868767	rs1444222	A	G	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	40894745	rs111256342	A	ACTGAGAATAC	4039.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	40894964	rs719228	G	T	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	40895026	rs719227	C	T	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	40895492	.	G	GA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.155;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr12	40911882	rs7300780	G	A	2912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=1.262;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:182,156:0.46:338
chr12	40911896	rs17128387	C	T	3193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=-0.159;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:141,160:0.53:301
chr12	40912236	rs2588399	G	T	3779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=3.522;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:192,194:0.50:386
chr12	40915787	rs2920821	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr12	40916218	.	CTTTTTTTTTTTTTTTTT	C,CTTT	1333.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.390;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=35.10;ReadPosRankSum=0.482;SOR=0.773;set=HC	GT:AD:AF:DP	1/2:3,12,23:0.32,0.61:38
chr12	40917312	rs2920820	C	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:42,62:0.60:104
chr12	40917324	rs4768286	T	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:27,51:0.65:78
chr12	40917532	rs201141559	TA	T	972.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr12	40918902	rs2933352	T	C	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:90,137:0.60:227
chr12	40920110	rs2933351	T	C	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	40920872	rs35635655	C	CT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=7.420;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.086;QD=3.53;ReadPosRankSum=2.179;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr12	40922104	rs1444220	A	C	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:167,175:0.51:342
chr12	40924191	rs12813020	T	A	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr12	40924470	rs2588403	T	C	190.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	40925908	rs7139187	A	C	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	40926493	rs4768290	C	T	2354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=1.431;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:178,129:0.42:307
chr12	40927890	rs7977973	T	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr12	40928587	.	CA	C	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.597;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr12	40929482	rs34442007	GT	G	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.958;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr12	40930709	rs7971316	G	C	10247.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr12	40933367	rs17128443	G	A	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.153;QD=6.59;ReadPosRankSum=0.949;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:69,45:0.39:114
chr12	40938944	rs7133943	C	T	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr12	40941113	rs1844978	C	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=1.948;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr12	40942463	rs35702138	GT	G	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.660;QD=0.58;ReadPosRankSum=-0.040;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:205,59:0.22:264
chr12	40943970	rs1492316	G	A	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,75:0.59:128
chr12	40950883	rs7487017	A	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.557;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	40951950	rs3751172	G	A	5787.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:244,289:0.54:533
chr12	40952895	rs11613339	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr12	40952934	rs1352938	A	G	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	40955544	rs17128462	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=0.328;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	40959673	rs17128481	T	G	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.15;ReadPosRankSum=0.547;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:23,51:0.69:74
chr12	41302223	rs115378305	A	G	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.735;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr12	41312365	rs10879356	A	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	41327426	rs55976072	TG	GT	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;JOINED;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr12	41330531	rs2289522	T	C	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-1.369;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:29,33:0.53:62
chr12	41331300	rs73275694	C	A	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	41331612	rs1442193	T	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.18;ReadPosRankSum=0.431;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	41337435	rs1056019	C	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:93,60:0.39:153
chr12	41387110	rs278911	C	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr12	41408134	rs397967	G	A	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:72,57:0.44:129
chr12	41463680	rs12297122	C	T	3579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=-1.789;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:122,91:0.43:213
chr12	41463689	rs11179698	T	C	3958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=-2.949;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:134,117:0.47:251
chr12	41582590	rs10879830	G	C	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.75;ReadPosRankSum=-0.095;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:42,51:0.55:93
chr12	41582603	rs10879831	G	C	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.18;ReadPosRankSum=1.557;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:35,36:0.51:71
chr12	41588124	rs3847980	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr12	41946453	rs285585	T	C	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	41946539	rs285584	G	A	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:73,70:0.49:143
chr12	41949370	rs285580	T	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	41949677	rs76597388	A	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.23;ReadPosRankSum=-2.323;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	41957568	rs157971	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr12	42481617	rs75740340	G	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.09;MQRankSum=-0.967;QD=17.59;ReadPosRankSum=-0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr12	42481627	rs78709072	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-1.645;QD=9.35;ReadPosRankSum=0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr12	42481670	rs200973030	C	T	34.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-2.200;QD=3.86;ReadPosRankSum=0.319;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr12	42481671	rs202200134	A	G	34.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-2.200;QD=3.86;ReadPosRankSum=0.319;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr12	42481803	rs824722	G	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=2.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	42503505	rs824695	T	A	1216.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.98;ReadPosRankSum=-1.153;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:4,54:0.93:58
chr12	42513100	rs824690	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr12	42538352	.	C	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.762;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:59,6:0.09:65
chr12	42538356	.	T	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.196;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:58,6:0.09:64
chr12	42538366	.	A	T	78.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.739;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:48,6:0.11:54
chr12	42538367	.	C	T	78.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.840;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:47,6:0.11:53
chr12	42538371	.	G	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-1.534;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:44,6:0.12:50
chr12	42538383	.	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-3.187;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:41,6:0.13:47
chr12	42538386	.	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-1.540;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:41,2:0.05:43
chr12	42629550	rs7960176	T	C	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.805;QD=7.15;ReadPosRankSum=-1.548;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:34,24:0.41:58
chr12	42631630	.	T	C	354.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr12	42632354	rs75085410	C	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr12	42717811	rs17091074	A	T	3871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=0.373;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:289,214:0.43:503
chr12	42717961	rs3747557	G	T	2061.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;MQRankSum=-0.214;QD=21.70;ReadPosRankSum=2.546;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:3,92:0.97:95
chr12	42726533	rs73285662	A	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.874;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr12	42729891	rs7296357	T	G	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	42768646	rs59428088	G	GT	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.597;QD=3.35;ReadPosRankSum=-0.503;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:49,30:0.38:79
chr12	42778675	rs78737005	T	C	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr12	42778916	rs76824507	C	G	1950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.754;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:110,100:0.48:210
chr12	42778922	rs1669906	G	A	6925.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.12;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	42781178	rs2243465	A	T	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	42787579	rs1376931	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr12	42835082	rs73273932	A	G	34.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr12	42836270	rs1452104	A	G	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:36,54:0.60:90
chr12	42839003	rs112504464	A	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr12	42839836	rs1669885	A	C	23200.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.980;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=-0.143;QD=24.60;ReadPosRankSum=2.490;SOR=0.624;set=HC	GT:AD:AF:DP	1/1:3,940:1.00:943
chr12	42840307	rs113369350	A	AC	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr12	42853058	rs68074167	GT	G	1029.27	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:10,68:0.87:78
chr12	42853350	rs1043656	A	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=1.803;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	42853520	rs1043652	A	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	42854205	rs3747562	A	G	10836.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr12	42854208	rs3747563	A	G	10871.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.19;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	42859961	rs12230583	A	G	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,74:0.55:134
chr12	42862750	rs2708062	T	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	42863516	rs67128387	G	A	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:67,64:0.49:131
chr12	43763234	rs1390000	G	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr12	43769228	rs10506226	A	C	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:125,118:0.49:243
chr12	43769276	rs10880473	T	C	2342.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:125,122:0.49:247
chr12	43769718	rs7972295	A	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	43770617	rs9804726	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr12	43817445	rs6582463	C	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	43819209	rs61925141	C	A	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,62:0.46:134
chr12	43819298	rs10785430	G	A	4408.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:312,230:0.42:542
chr12	43821335	rs60438862	T	TA	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.595;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=6.24;ReadPosRankSum=0.503;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:45,37:0.45:82
chr12	43823545	rs139600751	G	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,59:0.60:99
chr12	43824042	rs10880489	G	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	43824316	rs11182071	A	G	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,61:0.45:136
chr12	43827506	rs140835441	AACACACACAC	A,AACACAC	704.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	1/2:0.44,0.48:25
chr12	43837403	.	G	GT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.551;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr12	43846272	rs7307955	C	T	5237.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	43847941	rs6582464	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr12	43860526	rs11182088	A	G	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.410;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:65,73:0.53:138
chr12	43884330	rs7297170	C	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-0.109;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:81,47:0.37:128
chr12	43886199	rs11182110	G	C,GAAAAA	1892.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.87;QD=43.02;SOR=1.105;set=HC	GT:AD:AF:DP	1/2:0,22,22:0.50,0.50:44
chr12	43886205	rs55821433	G	C	924.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-0.536;QD=17.12;ReadPosRankSum=2.422;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:28,26:0.48:54
chr12	43945603	rs275602	A	C	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	44164689	rs1461567	G	A	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=0.199;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:32,50:0.61:82
chr12	44191625	rs12829856	G	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=1.923;QD=5.99;ReadPosRankSum=0.297;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr12	44192424	rs35482343	T	TA	598.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.838;QD=6.58;ReadPosRankSum=0.261;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:44,47:0.52:91
chr12	44196350	rs34291769	T	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-1.798;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr12	44196407	rs10880568	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr12	44199961	rs71435960	C	CCTCCCGGCT	2070.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.30;ReadPosRankSum=1.786;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:78,49:0.39:127
chr12	44338153	rs6582491	T	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	44537495	rs115427402	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr12	44605273	rs189717638	A	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	44913682	rs60797262	GA	G	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.96;ReadPosRankSum=0.842;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	44913698	rs59255697	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	44926334	rs2270479	T	A	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:66,74:0.53:140
chr12	45004824	rs2305448	G	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=7.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-1.962;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr12	45004829	rs61323848	G	T	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.880;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=7.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=-2.137;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	45059237	rs2290353	T	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:71,66:0.48:137
chr12	45170006	rs4768572	T	C	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	45170063	rs12309477	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr12	45173571	rs1123078	C	A	4365.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	45173858	rs1122352	T	A	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	45173884	rs1122351	G	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=0.311;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr12	45269439	rs11373833	G	GA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=1.396;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr12	45270272	rs4415832	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr12	45278055	rs56181373	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:46,70:0.60:116
chr12	45307633	rs374144	T	C	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=1.711;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr12	45410075	rs1224442	A	G	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:247,246:0.50:493
chr12	45417666	rs2731038	T	C	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:107,138:0.56:245
chr12	45429911	rs2160987	A	G	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:89,76:0.46:165
chr12	45444238	rs11182810	T	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr12	45444264	rs11182811	G	C	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr12	45568299	rs73279272	G	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,54:0.43:127
chr12	45664213	rs10748415	G	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	45695735	rs4140756	C	A	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	45771901	.	G	GT	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.879;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:75,26:0.26:101
chr12	46215163	rs2059404	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr12	46230510	rs151327096	A	C	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=2.216;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:23,45:0.66:68
chr12	46287170	rs138252675	TTC	T	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-1.620;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:203,34:0.14:237
chr12	46321417	rs11574971	G	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:105,74:0.41:179
chr12	46321514	rs7315731	A	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr12	46322449	rs10880868	C	T	4780.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:208,236:0.53:444
chr12	46338992	rs11348395	CA	C	471.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr12	46367903	rs10880879	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr12	46367939	rs11183268	G	T	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:59,81:0.58:140
chr12	46367953	rs74081611	C	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,64:0.42:151
chr12	46385848	rs12828693	C	T	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:247,206:0.45:453
chr12	46582540	rs1045278	T	A	110.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	46589988	rs11608815	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:168,120:0.42:288
chr12	46591906	rs7954255	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	46601056	rs2289768	C	T	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	46633328	rs7959095	G	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.113;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr12	46662485	rs2242355	G	C	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	46755112	rs7961994	A	T	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	46758494	rs2307061	A	G	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr12	46759017	rs7968173	T	A	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	46759057	rs12307969	G	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	46761127	rs10880959	G	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	47159123	rs4768756	A	G	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	47159151	rs78974211	G	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,43:0.41:105
chr12	47159196	rs2430921	A	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,52:0.56:93
chr12	47160259	rs76844129	G	A	2738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.735;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:186,146:0.44:332
chr12	47162889	rs2465582	A	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr12	47162938	rs2216433	T	G	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	47163253	rs144308867	T	C	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.819;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:38,22:0.37:60
chr12	47168898	rs180414	G	A	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	47170887	rs180419	C	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=2.224;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr12	47173391	rs80164301	T	C	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:109,123:0.53:232
chr12	47173662	rs180426	A	G	7777.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	47178307	rs180430	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=2.416;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:66,28:0.30:94
chr12	47186708	rs74084202	T	C	4294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-1.135;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:231,220:0.49:451
chr12	47581629	rs832733	T	C	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-1.493;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:43,30:0.41:73
chr12	47758032	rs215383	A	G	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	47761212	rs58616	G	A	3558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.521;QD=8.81;ReadPosRankSum=2.007;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:216,188:0.47:404
chr12	47761313	rs11419253	A	AT	1518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=6.49;ReadPosRankSum=0.918;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:129,105:0.45:234
chr12	48061435	rs7311790	G	A	52.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.20;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	48075597	rs36123489	A	G	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr12	48081539	rs7136422	C	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.891;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=9.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=-1.377;SOR=0.038;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	48091524	rs149483016	CAG	C	2355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.329;QD=12.46;ReadPosRankSum=-0.420;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:121,68:0.36:189
chr12	48091557	rs142105667	GA	G	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.541;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.704;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:61,29:0.32:90
chr12	48091586	rs200741779	CAAAT	C	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.180;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr12	48096741	rs111862039	C	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	48104746	rs1235152	G	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	48106488	rs1234820	G	T	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.972;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr12	48110325	rs1235153	A	G	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	48110608	rs2524318	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	48110613	rs2524317	G	A	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.91;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	48112104	rs73300701	G	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,23:0.32:72
chr12	48119049	rs7967546	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr12	48132451	rs2072116	T	C	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	48132889	rs2074535	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr12	48134300	rs12828238	G	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:84,74:0.47:158
chr12	48134381	rs35703007	CG	C	3658.73	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:130,144:0.53:274
chr12	48134695	rs2074533	T	C	4949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=1.090;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:410,275:0.40:685
chr12	48134768	rs80097705	A	T	4363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-1.129;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:276,232:0.46:508
chr12	48137950	rs7308119	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr12	48140381	rs11168223	T	C	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr12	48141798	rs56199059	T	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:61,61:0.50:122
chr12	48142418	rs757281	C	G	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	48143095	rs149061709	G	GCTCTGGT	9843.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.97;ReadPosRankSum=4.534;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:278,241:0.46:519
chr12	48143360	rs757280	T	C	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	48144243	rs757279	A	C	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	48144925	rs2016123	T	C	10288.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr12	48145104	rs1018939	G	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr12	48145153	rs757287	G	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:61,61:0.50:122
chr12	48145171	rs757286	C	T	1811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-0.449;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:95,92:0.49:187
chr12	48151760	rs201123081	C	T	3115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-1.005;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:183,164:0.47:347
chr12	48151822	rs11168230	C	G	2260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-0.374;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:145,118:0.45:263
chr12	48164758	rs2544025	G	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr12	48174351	rs60379857	C	CT	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.432;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:28,24:0.46:52
chr12	48178127	rs3192737	A	G	1529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-2.546;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:92,82:0.47:174
chr12	48178465	rs3815138	T	C	4118.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:233,214:0.48:447
chr12	48179263	rs201356739	A	G	2842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-0.322;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:164,151:0.48:315
chr12	48179402	rs3815131	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr12	48179463	rs3815130	C	T	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:61,55:0.47:116
chr12	48181778	rs6580637	T	C	14440.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:1,556:1.00:557
chr12	48185167	rs11832133	G	C	11462.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,432:1.00:432
chr12	48185192	rs56047798	G	T	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:134,152:0.53:286
chr12	48238757	rs731236	A	G	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	48238837	rs7975232	C	A	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	48249259	rs11168265	C	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr12	48251533	rs11168266	C	T	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	48259126	rs12717991	C	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:56,63:0.53:119
chr12	48272743	rs10783218	G	A	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:175,122:0.41:297
chr12	48272895	rs2228570	A	G	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:130,139:0.52:269
chr12	48295181	rs57946627	T	C	8641.77	.	AC=1;AF=0.500;AN=2;DB;DP=922;set=Intersection	GT:AD:AF:DP	0/1:469,445:0.49:914
chr12	48358279	rs11609253	C	A	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	48360620	rs2286024	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	48360947	.	T	TA	757.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=1.959;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:308,99:0.24:407
chr12	48371595	rs1793949	G	A	3411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=1.313;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:128,156:0.55:284
chr12	48372640	rs115194627	G	A	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr12	48373718	rs11443755	A	AC	1798.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	48374513	rs1635554	A	G	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	48374616	rs12300271	T	C	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-0.037;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:109,56:0.34:165
chr12	48374826	rs2276458	T	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=-0.060;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	48375475	rs1793937	C	G	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:85,67:0.44:152
chr12	48375568	rs1635553	A	G	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:112,99:0.47:211
chr12	48375965	rs2276457	C	T	4393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=1.214;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:114,123:0.52:237
chr12	48375975	rs2276456	A	G	2081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=1.493;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:100,105:0.51:205
chr12	48376137	rs2276455	G	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=0.809;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:30,29:0.49:59
chr12	48376291	rs2276454	G	A	3050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.361;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:117,152:0.57:269
chr12	48376443	rs3842680	A	AC	1540.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr12	48376447	rs3829737	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr12	48376503	rs3829736	C	T	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:152,165:0.52:317
chr12	48376530	rs11168337	C	A	6146.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:300,302:0.50:602
chr12	48377970	rs1635550	A	G	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:108,95:0.47:203
chr12	48379810	rs3829734	G	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr12	48379961	rs1635547	A	C	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=-1.918;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:45,52:0.54:97
chr12	48379964	rs1635546	A	G	2009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.10;ReadPosRankSum=-1.874;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:46,54:0.54:100
chr12	48380031	rs1635544	A	G	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:186,198:0.52:384
chr12	48383235	rs1635537	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr12	48386553	rs1635534	A	G	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:75,62:0.45:137
chr12	48386577	rs1793915	G	T	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:109,95:0.47:204
chr12	48387052	rs1793912	A	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.24;ReadPosRankSum=-1.220;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr12	48387057	rs1793911	G	C	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.78;ReadPosRankSum=-1.380;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr12	48389245	rs12423250	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr12	48389643	rs1034762	A	C	10408.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr12	48392433	rs1793958	A	G	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	48398002	rs3803184	G	C	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:1,286:1.00:287
chr12	48398080	rs3803183	T	A	6862.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr12	48413789	rs113940474	A	ATATTGT	4822.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.631;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:173,121:0.41:294
chr12	48413875	rs17122567	G	A	3918.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:384,226:0.37:610
chr12	48413944	rs7299135	C	T	4139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.670;QD=10.72;ReadPosRankSum=0.411;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:265,121:0.31:386
chr12	48413950	rs28459711	A	C	4085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.678;QD=11.32;ReadPosRankSum=-0.121;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:246,115:0.32:361
chr12	48413979	rs7299364	G	T	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:140,64:0.31:204
chr12	48414009	rs59863032	CT	C	408.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.789;QD=4.92;ReadPosRankSum=0.479;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:36,47:0.57:83
chr12	48441608	.	C	T	214.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	48441692	rs1018973	C	G	2032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=1.447;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:109,102:0.48:211
chr12	48457385	rs3742074	C	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	48459488	rs17122612	C	G	1580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-0.959;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:107,86:0.45:193
chr12	48460563	rs77759793	G	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.977;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.202;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr12	48465425	rs72644844	A	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr12	48465559	rs138171426	TC	T	378.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	48468588	rs59901073	C	CA	835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.603;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=5.699;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=7.88;ReadPosRankSum=-1.081;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:45,61:0.58:106
chr12	48468652	rs4258439	A	G	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	48477422	rs886588	A	G	5513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=0.960;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:297,285:0.49:582
chr12	48490243	rs63235460	AT	A	857.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=5.665;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.864;QD=6.55;ReadPosRankSum=0.817;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:57,74:0.56:131
chr12	48499131	rs2408955	G	T	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	48501161	rs11609399	A	T	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-2.093;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:119,91:0.43:210
chr12	48501411	rs10492080	A	G	30.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	48502100	rs725454	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr12	48512285	rs4760682	C	A	3696.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.309;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.98;ReadPosRankSum=-0.473;SOR=0.290;set=HC	GT:AD:AF:DP	1/1:1,147:0.99:148
chr12	48512331	rs11168414	C	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:74,64:0.46:138
chr12	48512521	rs11168415	A	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr12	48516464	rs2269935	G	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr12	48525861	rs10875747	A	G	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:131,154:0.54:285
chr12	48526712	rs2228500	G	A	5233.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:244,262:0.52:506
chr12	48527059	rs2269933	G	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:62,70:0.53:132
chr12	48534814	rs34700912	A	AG	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	48535080	rs56117548	G	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr12	48535278	rs79454264	C	T	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:64,84:0.57:148
chr12	48537624	rs4075913	A	G	4083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=1.448;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:144,196:0.58:340
chr12	48538979	rs11168427	A	G	5113.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:260,266:0.51:526
chr12	48543978	rs61918826	T	C	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-0.073;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:62,68:0.52:130
chr12	48545553	rs10783230	G	T	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:53,74:0.58:127
chr12	48545630	rs10875750	C	T	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr12	48578325	rs10783231	A	C	3017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.325;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:124,151:0.55:275
chr12	48596875	rs144247841	C	CA	3219.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:119,106:0.47:225
chr12	48723784	rs2291483	C	T	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=0.086;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:95,90:0.49:185
chr12	48738555	rs34591795	GA	G	145.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr12	48741219	rs901962	A	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	48877056	rs7972785	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr12	48879951	rs11168599	T	G	1858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-2.382;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:92,99:0.52:191
chr12	48880381	rs2731091	A	G	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=2.425;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:149,134:0.47:283
chr12	48880550	rs2731092	T	C	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:150,119:0.44:269
chr12	48883012	rs2705127	T	C	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr12	48884535	rs2731102	G	C	5373.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:311,285:0.48:596
chr12	48884756	rs2731103	C	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr12	48888594	rs11458	C	T	5209.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:255,264:0.51:519
chr12	48888689	rs9268	C	G	8581.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr12	48888763	rs2705132	A	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	48919556	rs2731073	A	G	12504.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr12	48919659	rs4075258	TG	CA	6933.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;JOINED;set=Intersection	GT:AD:AF:DP	0/1:174,178:0.51:352
chr12	48919796	rs12425460	C	T	4233.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:216,209:0.49:425
chr12	48920073	rs61941963	G	A	5467.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:284,278:0.49:562
chr12	48953504	rs11168637	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	48954040	rs1807757	A	G	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:130,136:0.51:266
chr12	48954225	rs7312017	G	C	6378.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:333,319:0.49:652
chr12	49048738	rs3741628	G	T	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	49048985	rs6580690	G	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	49054491	rs3741629	G	C	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	49065727	rs7303113	T	C	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:145,209:0.59:354
chr12	49073358	rs3741630	A	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	49073721	rs61942051	A	G	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	49075811	rs2277365	T	G	5067.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:225,244:0.52:469
chr12	49075983	rs61942052	CT	GG	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr12	49076036	rs10783277	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	49086963	rs3741632	G	A	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	49087656	rs3013	G	C	4869.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:228,235:0.51:463
chr12	49091635	.	AAAAAT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-1.058;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	49091642	rs200931277	T	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.06;ReadPosRankSum=-1.191;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr12	49091972	rs11420004	G	GA	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.907;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr12	49093729	rs7308699	C	T	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	49095000	.	CTTTTTTT	C	150.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.84;ReadPosRankSum=1.465;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	49095046	rs149152239	T	TCAC	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.932;QD=24.52;ReadPosRankSum=0.184;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	49099491	rs77729410	T	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,34:0.40:85
chr12	49108488	rs7138930	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	49110223	rs11168699	C	A	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=0.618;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:36,26:0.42:62
chr12	49110223	.	CAC	AAA	666	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=6;HapScore=2;MGOF=12;MMLQ=27;MQ=60.0;NF=15;NR=5;PP=666;QD=35.9733937431;SC=TCGTCCCCCCCACAGAGCCTG;SbPval=0.3;Source=Platypus;TC=44;TCF=36;TCR=8;TR=20;WE=49110233;WS=49110213;set=Platypus	GT:AD:AF:DP	1/0:24,20:0.45:44
chr12	49110225	rs11168700	C	A	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=-0.488;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:38,32:0.46:70
chr12	49110248	rs1110432	G	A	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	49164825	rs9804777	T	C	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.17;ReadPosRankSum=-1.666;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:45,55:0.55:100
chr12	49167143	rs3729969	T	A	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:32,48:0.60:80
chr12	49167202	rs3729980	A	C	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:64,102:0.61:166
chr12	49167683	rs3730074	C	A	2453.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:100,108:0.52:208
chr12	49168128	rs3730072	G	C	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:126,113:0.47:239
chr12	49168848	rs3730070	G	C	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:85,70:0.45:155
chr12	49169262	rs3730069	T	A	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:248,220:0.47:468
chr12	49170719	rs11168733	G	A	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr12	49221622	rs1045340	G	A	15742.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,611:1.00:611
chr12	49230035	rs1057908	T	G	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	49255798	rs1565933	G	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	49259194	rs2453489	T	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	49297720	.	A	AAAATAAAT	53.70	.	AC=2;AF=1.00;AN=2;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	49298059	rs3809147	G	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	49308284	rs10747556	A	G	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	49310724	rs10875891	GA	AG	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	49312593	rs10875893	A	G	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	49314862	rs10875894	C	A	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	49314994	rs4760600	A	G	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	49318546	rs2293449	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	49319036	rs12829682	A	C	18128.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,713:1.00:713
chr12	49319270	rs2272312	C	T	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	49325142	rs11168794	G	A	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	49332092	rs1054376	G	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	49332366	rs4760666	C	T	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	49333896	rs5798094	G	GA	3864.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	49334044	rs708242	G	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	49334762	rs12122	G	C	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	49334982	rs10747557	G	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	49359989	rs1051886	G	A	8670.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr12	49362779	rs833834	T	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	49397291	.	G	GC	2214.73	.	AC=1;AF=0.500;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:17,96:0.85:113
chr12	49439659	rs833818	C	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr12	49483555	rs75012285	C	A	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=0.494;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:68,44:0.39:112
chr12	49484293	rs114857441	T	A	2369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-0.672;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:106,117:0.52:223
chr12	49487927	rs11168855	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr12	49491967	rs11834944	G	C	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr12	49494862	rs35472356	C	CA	483.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr12	49495321	rs35541634	C	A	4483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-0.475;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:207,222:0.52:429
chr12	49497373	rs76057962	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	49498130	rs10783302	G	T	1140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=-0.602;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:76,61:0.45:137
chr12	49498751	rs2279596	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	49499568	rs143733095	C	T	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=-3.089;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:47,89:0.65:136
chr12	49499759	rs114413686	C	T	2425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=0.977;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:87,65:0.43:152
chr12	49499766	rs11836714	C	G	2440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=0.747;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:81,64:0.44:145
chr12	49500509	rs10747561	C	T	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=-0.035;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:240,161:0.40:401
chr12	49500960	rs78798784	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	49521672	rs2753	G	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:128,93:0.42:221
chr12	49522578	rs1057725	T	C	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:73,36:0.33:109
chr12	49522786	rs1865157	C	A	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-0.337;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:39,34:0.47:73
chr12	49579696	rs697624	C	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:119,71:0.37:190
chr12	49580180	rs1056875	T	C	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-5.204;QD=8.89;ReadPosRankSum=1.105;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:74,63:0.46:137
chr12	49580279	rs112063173	G	C	3041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.855;QD=15.44;ReadPosRankSum=0.878;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:115,82:0.42:197
chr12	49580283	rs111590199	A	G	3077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.849;QD=14.80;ReadPosRankSum=1.155;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:122,86:0.41:208
chr12	49582334	rs80167147	C	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr12	49582657	rs35896524	G	A	2193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=1.112;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:118,113:0.49:231
chr12	49667103	rs9668136	A	T	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	49689597	rs7488343	G	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.88;ReadPosRankSum=2.128;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	49690337	rs2070760	T	C	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:162,130:0.45:292
chr12	49691250	rs73112143	A	G	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:111,105:0.49:216
chr12	49691387	rs200141011	C	A	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:102,112:0.52:214
chr12	49691567	rs2236746	T	C	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:121,129:0.52:250
chr12	49719149	rs111795391	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.480;QD=0.88;ReadPosRankSum=0.139;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:46,16:0.26:62
chr12	49721122	rs73309977	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:59,26:0.31:85
chr12	49722646	rs35700294	C	CA	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.550;QD=0.38;ReadPosRankSum=-0.091;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:221,41:0.16:262
chr12	49722885	rs2303614	C	G	5556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=0.464;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:387,295:0.43:682
chr12	49723581	rs11835303	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr12	49723963	rs4243545	A	G	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr12	49724955	rs3088008	A	C	7391.77	.	AC=1;AF=0.500;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	0/1:431,372:0.46:803
chr12	49730135	rs146137821	G	C	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=1.356;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:68,76:0.53:144
chr12	49863325	.	TAAA	T	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=2.858;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr12	49883371	rs2272478	A	G	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-0.165;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:38,26:0.41:64
chr12	49893815	rs11447993	C	CT	638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.050;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:58,54:0.48:112
chr12	49912783	rs115691286	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	49934565	rs7132792	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr12	49937032	rs147207795	G	C	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:172,166:0.49:338
chr12	49937392	rs74089562	T	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	49937654	rs11337899	GC	G	2242.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:85,91:0.52:176
chr12	49937813	rs1150057	A	G	6797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-3.939;QD=9.09;ReadPosRankSum=-1.936;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:390,358:0.48:748
chr12	49937912	rs1150058	G	A	3690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.961;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-12.993;QD=7.69;ReadPosRankSum=2.897;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:289,191:0.40:480
chr12	49937921	.	A	ACCTC	3898.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DP=489;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-15.540;QD=12.70;ReadPosRankSum=4.477;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:198,109:0.36:307
chr12	49951280	rs77998597	C	T	4286.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:210,201:0.49:411
chr12	49952774	rs376853171	AAGGGATGATGGGATGGGG	A	4351.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:145,120:0.45:265
chr12	49957103	rs57965817	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr12	49959146	rs116159158	A	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr12	49960551	rs13066	C	A	4395.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:296,232:0.44:528
chr12	49992692	rs78475684	G	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:91,58:0.39:149
chr12	49994541	rs77065743	C	T	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:116,121:0.51:237
chr12	49999275	rs11832727	T	C	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:60,66:0.52:126
chr12	50025998	rs145813152	T	C	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:128,137:0.52:265
chr12	50026195	rs114259945	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr12	50026779	rs376648517	GC	G	1308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.023;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.869;QD=12.12;ReadPosRankSum=-0.084;SOR=0.170;set=HC	GT:AD:AF:DP	0/1:41,67:0.62:108
chr12	50029880	rs56840810	G	A	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:116,89:0.43:205
chr12	50030707	rs115064935	C	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	50031437	rs116701528	A	C	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr12	50038292	rs4073998	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr12	50040811	rs3841320	A	AG	4942.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.989;QD=13.15;ReadPosRankSum=1.444;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:186,190:0.51:376
chr12	50043188	rs140147413	A	G	7974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-0.034;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:397,407:0.51:804
chr12	50043884	rs61512987	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr12	50045987	rs7978381	A	G	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:158,159:0.50:317
chr12	50047922	rs7299820	C	T	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:173,124:0.42:297
chr12	50048158	rs144708179	G	A	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:72,72:0.50:144
chr12	50050151	rs139157446	AAC	A	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.326;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:66,10:0.13:76
chr12	50051003	rs116640418	G	A	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.59;ReadPosRankSum=-0.507;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:74,77:0.51:151
chr12	50051003	.	GAG	AAA	1493	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=11;NR=31;PP=1493;QD=36.8206636872;SC=AGTCAGGTGGGAGCTGAGGCT;SbPval=0.63;Source=Platypus;TC=96;TCF=27;TCR=69;TR=42;WE=50051013;WS=50050993;set=Platypus	GT:AD:AF:DP	1/0:54,42:0.44:96
chr12	50051005	rs114359142	G	A	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.63;ReadPosRankSum=0.464;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:73,70:0.49:143
chr12	50055890	rs11831670	G	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,53:0.45:117
chr12	50059547	rs57905415	C	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr12	50146173	rs11401668	C	CT	654.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.373;QD=4.78;ReadPosRankSum=-0.209;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:79,58:0.42:137
chr12	50146950	rs1012874	T	C	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr12	50149347	rs17123927	A	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr12	50149544	rs74087188	T	C	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:120,94:0.44:214
chr12	50149604	rs77056500	C	T	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr12	50149620	.	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.552;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr12	50152193	rs4563	G	A	5961.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:378,315:0.45:693
chr12	50152601	.	C	CT	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=5.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.586;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr12	50155400	rs6580721	A	G	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=11.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.977;SOR=2.476;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr12	50156640	rs10506287	T	C	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-0.687;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:135,98:0.42:233
chr12	50174307	rs111500583	CA	C	2059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.911;QD=4.16;ReadPosRankSum=-0.867;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:252,243:0.49:495
chr12	50188391	rs12314502	C	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr12	50188395	rs60633549	CA	C	1349.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:48,37:0.44:85
chr12	50188434	rs2603105	T	A	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:128,104:0.45:232
chr12	50189807	rs2720298	C	A	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:167,148:0.47:315
chr12	50189834	rs2603104	T	G	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:139,125:0.47:264
chr12	50192009	rs1075366	T	C	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.085;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:107,91:0.46:198
chr12	50271372	rs1248263	G	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	50271497	rs73116304	C	T	7330.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	50290728	rs297935	A	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr12	50291735	rs297937	G	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr12	50297340	rs12427051	C	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr12	50297670	rs706795	T	C	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	50304588	rs487165	A	T	3481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=0.631;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:208,181:0.47:389
chr12	50304949	rs450798	G	A	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	50305007	rs394119	C	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	50345079	rs3782319	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.652;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr12	50348078	rs426496	T	C	4871.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:231,241:0.51:472
chr12	50348359	rs12372344	T	C	4715.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:196,221:0.53:417
chr12	50348674	rs402813	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr12	50349090	rs410837	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr12	50349143	rs403201	C	G	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-1.852;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:49,50:0.51:99
chr12	50349411	rs457487	C	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr12	50349765	rs467323	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr12	50356174	rs139560378	TGGG	T,TGGGG	1484.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;set=Intersection	GT:AF:DP	1/2:0.54,0.40:50
chr12	50358073	rs296753	C	G	8672.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr12	50367013	rs75073397	T	C	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:232,169:0.42:401
chr12	50368013	rs296748	C	T	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:43,69:0.62:112
chr12	50368200	rs114066000	C	G	3880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-0.323;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:295,210:0.42:505
chr12	50386015	rs296737	C	T	4119.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:184,208:0.53:392
chr12	50391055	rs59469579	CT	C	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.042;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr12	50393372	rs378943	G	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr12	50452708	rs653576	C	G	12681.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr12	50467644	rs706792	G	T	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:150,132:0.47:282
chr12	50467769	rs706793	G	A	8228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.451;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=0.555;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:397,402:0.50:799
chr12	50471630	rs2272391	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr12	50473660	rs404751	A	G	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	50479935	rs2307082	C	T	4920.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:273,248:0.48:521
chr12	50482211	rs646782	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr12	50484013	rs73121544	G	A	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:96,107:0.53:203
chr12	50498139	rs836178	T	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr12	50500994	rs76583391	A	G	3104.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:170,163:0.49:333
chr12	50503082	rs836179	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr12	50503242	rs116736822	C	T	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:185,115:0.38:300
chr12	50503269	rs836180	C	T	3235.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:97,155:0.62:252
chr12	50513687	rs7961065	C	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	50517454	rs5798126	C	CT	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-1.310;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:38,33:0.46:71
chr12	50529314	rs11169281	C	T	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:132,117:0.47:249
chr12	50529736	rs3741562	G	A	1964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=3.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-1.353;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:215,115:0.35:330
chr12	50529936	rs7136570	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr12	50537815	rs7302981	A	G	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:106,91:0.46:197
chr12	50599709	rs2302900	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr12	50599984	rs1362984	T	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr12	50616346	rs3812825	A	G	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:152,143:0.48:295
chr12	50627942	rs113699072	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr12	50727706	rs6580741	G	C	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:153,141:0.48:294
chr12	50727958	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.364;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr12	50744094	rs7296277	G	A	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	50744119	rs7296291	G	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:77,94:0.55:171
chr12	50744171	rs7312252	T	C	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:152,170:0.53:322
chr12	50744753	rs10506292	T	C	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:158,155:0.50:313
chr12	50746348	rs7304951	A	G	11438.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr12	50746917	rs10876023	A	G	5405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.844;QD=11.73;ReadPosRankSum=-0.693;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:193,268:0.58:461
chr12	50747005	rs10876024	T	C	4380.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:169,219:0.56:388
chr12	50749221	rs4435082	G	C	11311.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.19;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr12	50749227	rs4625558	T	G	10653.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	50749294	rs4421818	A	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:139,79:0.36:218
chr12	50750040	rs7964439	C	A	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	50754563	rs12303082	T	G	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:94,106:0.53:200
chr12	50796423	rs7138887	C	G	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-0.801;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr12	50829263	rs113327207	T	TTATTC	37.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:3,2:0.40:5
chr12	50856259	rs5798139	C	CA,CAA	3397.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=1.287;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.000;QD=12.54;ReadPosRankSum=0.008;SOR=0.579;set=HC	GT:AD:AF:DP	1/2:64,94,113:0.35,0.42:271
chr12	50898784	rs10525715	T	TGGCGGCGGCGGCGGCGGC	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:79,67:0.46:146
chr12	51019633	rs34609458	TC	T	755.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	51034721	rs2731436	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr12	51076844	rs2731447	C	T	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	51086931	rs2090852	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr12	51088979	rs34553264	T	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr12	51089287	rs2139930	G	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr12	51089572	rs2684890	G	A	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	51089616	rs2684891	T	C	7370.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	51089734	rs11169524	T	A	6423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=-0.520;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:346,330:0.49:676
chr12	51089848	.	T	A	975.77	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr12	51100531	.	T	C	263.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr12	51121629	rs3832875	CA	C	2202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=4.509;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.626;QD=7.22;ReadPosRankSum=0.691;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:173,132:0.43:305
chr12	51128832	rs3742062	A	G	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:77,73:0.49:150
chr12	51135167	rs1975351	A	G	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	51135275	rs1866422	T	C	7372.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	51138687	rs2280503	A	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,50:0.47:107
chr12	51181970	rs113494562	C	CT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.07;ReadPosRankSum=0.431;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	51182122	rs10747592	C	T	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-0.462;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:87,50:0.36:137
chr12	51189619	rs3742065	T	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr12	51203183	.	T	A	256	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=4;HapScore=4;MGOF=179;MMLQ=18;MQ=59.44;NF=2;NR=3;PP=256;QD=58.1542425094;SC=AAAAAATTATTTTTGTGAAGT;SbPval=0.35;Source=Platypus;TC=12;TCF=7;TCR=5;TR=5;WE=51203191;WS=51203168;set=Platypus	GT:AD:AF:DP	1/0:7,5:0.42:12
chr12	51203226	rs4986837	GT	G	664.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	51203371	rs1129406	C	T	3229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.757;QD=12.97;ReadPosRankSum=1.038;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:157,92:0.37:249
chr12	51203376	rs4986838	T	C	3125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.736;QD=12.97;ReadPosRankSum=1.382;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:155,86:0.36:241
chr12	51207704	rs829112	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	51207733	rs17124979	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr12	51236802	rs10876100	T	C	7739.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:438,407:0.48:845
chr12	51236931	rs829121	G	A	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	51237816	rs861204	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:89,77:0.46:166
chr12	51279444	rs138746951	ATTT	A	165.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	51319346	rs2359005	A	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	51354610	rs58493263	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr12	51354632	rs72092100	A	AT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.373;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	51382232	rs161044	T	C	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	51386529	rs67409672	AG	A	190.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.626;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:35,24:0.41:59
chr12	51386530	rs2018673	G	A	193.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-1.178;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr12	51386839	rs224569	C	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	51386868	rs224570	T	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=38.28;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	51386872	rs1632791	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.23;QD=43.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	51393322	rs60886362	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	51399050	rs224589	T	G	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	51399997	rs224590	A	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=24.14;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	51400084	rs140582579	AAAAC	A	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	51402905	rs445520	T	G	13052.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr12	51404438	rs7312269	T	G	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:55,62:0.53:117
chr12	51404467	rs427020	C	T	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:87,88:0.50:175
chr12	51404679	rs370462	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr12	51421950	rs17125245	G	C	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:73,62:0.46:135
chr12	51453366	rs3190077	A	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr12	51457854	rs11542510	G	A	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:74,67:0.48:141
chr12	51458502	rs11832566	A	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr12	51461425	rs4768956	C	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	51461793	rs2029146	G	A	3100.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:94,142:0.60:236
chr12	51467596	rs11169696	A	C	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.911;QD=12.24;ReadPosRankSum=2.029;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:42,53:0.56:95
chr12	51502791	rs7134695	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr12	51504799	rs7978782	T	C	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:102,113:0.53:215
chr12	51504894	rs11308041	GT	G	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.003;QD=4.11;ReadPosRankSum=-0.685;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr12	51511244	rs10876138	G	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	51512637	rs3839987	CT	C	644.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr12	51518401	rs78208051	G	A	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:222,141:0.39:363
chr12	51589663	rs57821022	A	C	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr12	51636259	rs1049467	C	T	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr12	51663215	rs2114876	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.54;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	51681846	rs4611251	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	51681903	rs7954976	T	C	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	51685831	rs3210837	T	C	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	51686204	rs7306505	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	51686285	rs7135343	A	T	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	51691149	rs3782469	A	G	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	51707801	rs138541026	CTTAT	C,CTTATTTAT	528.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=46;set=Intersection	GT:AF:DP	1/2:0.56,0.44:16
chr12	51722311	rs7138439	C	T	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:53,74:0.58:127
chr12	51733734	rs17860317	G	A	3996.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:248,213:0.46:461
chr12	51733951	rs12816187	A	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr12	51734924	.	G	T	822.77	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:60,42:0.41:102
chr12	51735022	rs934089	A	T	4383.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:164,217:0.57:381
chr12	51737607	rs17860299	G	A	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.530;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:78,83:0.52:161
chr12	51740387	rs57614420	ACTGGACCATATCC	AACCATATCC,A	3801.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=391;set=Intersection	GT:AF:DP	0/1:0.30:363
chr12	51740388	rs907354	C	A	5279.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:109,252:0.70:361
chr12	51740393	.	CCATATCCACTT	C	3779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.952;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=20.457;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.702;QD=10.03;ReadPosRankSum=2.278;SOR=1.281;set=HC	GT:AD:AF:DP	0/1:267,110:0.29:377
chr12	51740407	.	CATAA	C	3924.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.531;ClippingRankSum=0.000;DP=368;ExcessHet=3.0103;FS=15.200;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.629;QD=10.72;ReadPosRankSum=2.607;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:255,111:0.30:366
chr12	51740414	.	GAC	G	356	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=1;MGOF=118;MMLQ=24;MQ=59.87;NF=1;NR=32;PP=356;QD=12.3115238556;SC=TACCATAAAGGACCAGCATGT;SbPval=0.99;Source=Platypus;TC=105;TCF=14;TCR=91;TR=33;WE=51740423;WS=51740404;set=Platypus	GT:AD:AF:DP	0/1:72,33:0.31:105
chr12	51740415	.	A	AAG	4024.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.244;ClippingRankSum=0.000;DP=341;ExcessHet=3.0103;FS=8.774;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.486;QD=11.87;ReadPosRankSum=2.004;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:228,111:0.33:339
chr12	51740416	.	C	CG	3999.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.452;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=6.099;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.498;QD=11.94;ReadPosRankSum=2.021;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:226,109:0.33:335
chr12	51748395	rs7971653	G	A	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	51752085	rs5798170	GT	G	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.599;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:48,26:0.35:74
chr12	51754629	rs2241545	A	G	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	51773557	rs2278216	G	A	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr12	51796889	rs376258966	ATTAGGTAATAGGTATAAACTGCTCAGAACAGTGCTCAGAACATAATAAATGC	A	1327.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.302;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=48.452;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.544;QD=10.21;ReadPosRankSum=-1.745;SOR=4.163;set=HC	GT:AD:AF:DP	0/1:91,39:0.30:130
chr12	51796904	rs907350	T	C	1227.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:39,58:0.60:97
chr12	51845807	rs111508152	G	A	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:89,78:0.47:167
chr12	51846090	rs1995691	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	51851126	rs4512904	G	A	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:81,89:0.52:170
chr12	51852511	rs6580835	C	T	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:126,114:0.47:240
chr12	51855984	rs2271149	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	51856322	rs116796087	A	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr12	51863643	rs4491281	T	C	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	51864979	rs2292217	T	C	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:140,139:0.50:279
chr12	51865039	rs111732854	A	G	6321.77	.	AC=1;AF=0.500;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	0/1:410,345:0.46:755
chr12	51868310	rs113766976	G	T	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr12	51869098	rs868884	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr12	51874054	rs4761970	C	T	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=9.17;ReadPosRankSum=-2.640;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr12	51879826	rs10783445	G	T	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	51888998	rs2102376	G	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	51890721	rs10783448	G	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.195;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:33,21:0.39:54
chr12	51898014	rs3896351	A	G	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:50,73:0.59:123
chr12	51898108	rs3858636	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	51901390	rs7305599	A	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr12	52080965	rs4761829	C	T	8329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.048;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:344,411:0.54:755
chr12	52099153	rs2291265	C	T	3030.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:97,144:0.60:241
chr12	52100566	rs10783474	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.158;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr12	52139669	.	C	CT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.036;QD=0.59;ReadPosRankSum=-2.130;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:94,21:0.18:115
chr12	52139926	rs143715595	A	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr12	52156255	rs303767	A	C	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	52159438	rs56879517	G	GT	2079.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.828;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=0.454;QD=20.39;ReadPosRankSum=1.706;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:2,100:0.98:102
chr12	52163789	rs303808	G	A	1498.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	52173781	rs76315468	G	GTTC	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	52180670	rs184339163	A	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr12	52184271	rs303815	T	C	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:81,63:0.44:144
chr12	52184342	rs2241855	A	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr12	52188436	rs143139673	T	C	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr12	52200028	rs303828	C	A	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	52200742	rs60637	C	A	7675.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:302,370:0.55:672
chr12	52204246	rs172559	T	C	9906.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr12	52214872	rs149913232	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr12	52215102	rs303819	T	G	19063.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.08;ReadPosRankSum=-1.461;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:2,729:1.00:731
chr12	52281920	rs697633	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:116,106:0.48:222
chr12	52282060	rs697634	C	T	8968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=940;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.107;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:447,465:0.51:912
chr12	52284233	rs706832	T	C	17147.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr12	52284274	rs7303111	G	A	9737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=1031;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=2.449;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:531,492:0.48:1023
chr12	52345465	.	GGC	G	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=16.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-1.111;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr12	52345497	rs10540557	TGCG	T	2324.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=41.51;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	52369300	rs2242106	C	T	10939.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr12	52369956	rs3214829	G	GA	164.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	52381026	rs2252518	C	A	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	52404618	rs1298913	T	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr12	52408422	rs1283166	A	G	108.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	52448188	rs1882118	C	G	14155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=1770;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-1.793;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:985,759:0.44:1744
chr12	52448409	rs61751612	C	T	10617.77	.	AC=1;AF=0.500;AN=2;DB;DP=1009;set=Intersection	GT:AD:AF:DP	0/1:479,507:0.51:986
chr12	52452825	rs45491997	T	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr12	52470475	rs112776317	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr12	52565322	rs3741737	G	T	12528.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr12	52566047	rs3741736	G	A	6885.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	52566650	rs73103470	A	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	52574780	rs4762060	A	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	52579331	rs140694010	C	T	4706.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:233,240:0.51:473
chr12	52599790	rs78996008	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr12	52600033	rs10747632	T	C	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	52602013	rs1902767	C	T	9605.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr12	52627007	rs7308751	C	T	3204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-1.030;QD=10.58;ReadPosRankSum=-3.152;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:146,157:0.52:303
chr12	52627215	rs7308888	A	G	12984.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr12	52631242	rs12313552	C	T	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:49,71:0.59:120
chr12	52631313	rs6580870	A	G	9960.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr12	52631394	rs10637094	C	CAT	16659.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr12	52631409	rs11170058	C	T	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:214,119:0.36:333
chr12	52631510	.	ATGTG	ATGTGTGTGTGTG,A	657.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=65;set=Intersection	GT:AF:DP	0/1:0.71:14
chr12	52632573	rs7300317	A	G	5884.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:299,300:0.50:599
chr12	52635241	rs2078201	G	C	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:70,69:0.50:139
chr12	52635285	.	C	T	3468.77	.	AC=1;AF=0.500;AN=2;DP=329;set=Intersection	GT:AD:AF:DP	0/1:161,167:0.51:328
chr12	52635360	rs999665	G	A	5609.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:330,294:0.47:624
chr12	52635443	rs2243588	T	C	12278.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr12	52635560	rs999666	A	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr12	52639302	rs2608009	G	C	7628.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr12	52647197	rs11612499	A	T	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:187,174:0.48:361
chr12	52648297	rs9325150	T	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr12	52649887	rs2168762	T	C	11607.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr12	52649954	rs2242139	T	C	5053.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	52660904	rs2857686	C	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr12	52661075	rs748040	C	T	3640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=1.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=1.218;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:159,178:0.53:337
chr12	52661192	rs1870222	A	G	15985.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr12	52661209	rs1870223	T	C	14866.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr12	52661302	rs1870224	C	A	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	52679937	rs3660	C	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr12	52680008	rs3657	T	C	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.288;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:71,83:0.54:154
chr12	52680171	.	C	T	5374.77	.	AC=1;AF=0.500;AN=2;DP=533;set=Intersection	GT:AD:AF:DP	0/1:252,269:0.52:521
chr12	52681056	rs4761856	C	T	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:115,110:0.49:225
chr12	52681080	rs4761784	G	A	4059.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:103,111:0.52:214
chr12	52681416	rs7300801	T	C	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:295,93:0.24:388
chr12	52681437	rs3187034	A	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:355,99:0.22:454
chr12	52681533	rs7300941	T	C	5964.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	0/1:431,319:0.43:750
chr12	52681714	rs6580872	T	C	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr12	52681733	rs7954186	A	C	4253.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:229,215:0.48:444
chr12	52681925	rs6580873	A	C	6682.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr12	52681968	rs6580874	T	C	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.53;QD=32.53;SOR=4.949;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	52685096	rs2071588	C	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr12	52699548	rs2032360	T	C	4636.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:276,245:0.47:521
chr12	52700100	rs11612715	C	A	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr12	52708420	rs2857671	G	A	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:82,84:0.51:166
chr12	52708565	rs2857670	A	G	4621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.509;QD=8.96;ReadPosRankSum=-0.163;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:275,241:0.47:516
chr12	52708730	rs113407094	A	AGGTGT	660.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr12	52708978	rs3825221	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-1.548;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr12	52709032	rs3741721	T	C	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.302;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:68,24:0.26:92
chr12	52709981	rs2270266	C	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	52711450	rs2248619	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr12	52712975	rs3741715	G	A	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,60:0.44:137
chr12	52754700	.	G	A	607.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr12	52755189	rs2298797	A	G	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:96,81:0.46:177
chr12	52773702	rs1791611	G	A	2027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.283;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:107,102:0.49:209
chr12	52773774	rs1791661	T	C	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.124;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-2.040;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:59,63:0.52:122
chr12	52774158	rs951772	G	A	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:99,81:0.45:180
chr12	52774235	rs951773	A	G	4391.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:312,237:0.43:549
chr12	52774305	rs1732293	A	G	5851.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:344,306:0.47:650
chr12	52774370	rs1791657	G	A	2379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.642;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:133,125:0.48:258
chr12	52774993	rs883712	C	G	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:146,94:0.39:240
chr12	52775034	rs1791652	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:82,49:0.37:131
chr12	52775062	rs883709	T	C	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:74,55:0.43:129
chr12	52775395	rs883710	C	T	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr12	52776679	rs1732297	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr12	52776895	rs1732298	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:125,56:0.31:181
chr12	52776942	rs1732299	T	C	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.135;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:52,33:0.39:85
chr12	52777036	rs1732300	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	52777439	rs1614888	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:69,22:0.24:91
chr12	52777502	rs1945297	A	G	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-1.722;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:145,48:0.25:193
chr12	52777513	rs2245203	T	C	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-1.763;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:157,59:0.27:216
chr12	52777578	rs1613931	C	T	2355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.362;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:143,66:0.32:209
chr12	52777578	.	CGA	TGC	744	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=1;MGOF=13;MMLQ=27;MQ=60.0;NF=13;NR=16;PP=744;QD=27.4988922366;SC=CTCTAGGAACCGAACCTAAAT;SbPval=0.51;Source=Platypus;TC=100;TCF=43;TCR=57;TR=29;WE=52777588;WS=52777568;set=Platypus	GT:AD:AF:DP	0/1:71,29:0.29:100
chr12	52777580	rs1613929	A	C	2355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-0.925;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:143,68:0.32:211
chr12	52777606	rs1613859	G	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:133,61:0.31:194
chr12	52778772	rs1732303	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr12	52778947	rs1791631	A	G	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:213,135:0.39:348
chr12	52779244	rs1732304	A	G	8271.77	.	AC=1;AF=0.500;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	0/1:516,422:0.45:938
chr12	52779391	rs1732305	A	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr12	52789509	rs1732264	T	C	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,39:0.51:76
chr12	52789597	rs1732265	A	G	2912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=1.303;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:144,84:0.37:228
chr12	52789605	rs1732266	T	A	2914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=1.205;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:148,84:0.36:232
chr12	52790899	rs1791635	T	C	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.121;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=4.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=1.874;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:149,118:0.44:267
chr12	52818504	rs298104	T	G	8038.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:319,404:0.56:723
chr12	52822258	rs401926	A	G	9929.77	.	AC=1;AF=0.500;AN=2;DB;DP=987;set=Intersection	GT:AD:AF:DP	0/1:472,496:0.51:968
chr12	52824352	rs395623	G	A	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:129,139:0.52:268
chr12	52824562	rs443084	T	A	2124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-1.603;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:66,101:0.60:167
chr12	52825363	rs1798640	G	A	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:119,81:0.41:200
chr12	52827534	rs67876	C	T	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:37,60:0.62:97
chr12	52827818	rs298109	T	C	9744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.984;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:412,492:0.54:904
chr12	52841174	rs61746355	C	T	7455.77	.	AC=1;AF=0.500;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	0/1:282,358:0.56:640
chr12	52841765	rs388626	G	A	6840.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:419,345:0.45:764
chr12	52842736	rs437014	T	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:177,56:0.24:233
chr12	52844016	rs4024141	T	C	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr12	52844265	rs652423	T	C	8499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=840;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-3.027;QD=10.13;ReadPosRankSum=2.954;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:420,419:0.50:839
chr12	52844477	rs5798212	G	GC	1237.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:85,41:0.33:126
chr12	52845801	rs428894	T	C	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:74,85:0.53:159
chr12	52862767	rs2567	G	C	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.371;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr12	52862770	rs1053796	T	C	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=-0.783;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr12	52862783	rs2568	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr12	52863038	rs410562	G	A	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:294,238:0.45:532
chr12	52863213	rs412533	C	T	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:180,173:0.49:353
chr12	52863621	rs382367	T	G	7714.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:287,373:0.57:660
chr12	52863709	rs452600	C	T	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:93,134:0.59:227
chr12	52863732	rs434339	C	T	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:57,79:0.58:136
chr12	52864240	rs415580	G	T	8834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=869;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.501;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:423,440:0.51:863
chr12	52864843	rs604303	G	A	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:209,226:0.52:435
chr12	52865548	rs28759265	G	C	5623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-13.257;QD=8.79;ReadPosRankSum=-1.255;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:345,295:0.46:640
chr12	52865592	rs644414	A	T	3174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-16.508;QD=7.78;ReadPosRankSum=1.019;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:236,172:0.42:408
chr12	52865687	rs391567	C	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr12	52881376	rs1053857	C	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=23.65;ReadPosRankSum=0.412;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr12	52881380	rs1053854	A	C	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=21.29;ReadPosRankSum=-0.276;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr12	52881428	rs28667515	A	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr12	52882410	rs144849815	T	TGAA	2526.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=2.998;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	52884283	rs298119	A	G	3514.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:136,172:0.56:308
chr12	52884557	rs298120	T	C	13699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=1270;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-19.689;QD=10.83;ReadPosRankSum=2.005;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:599,666:0.53:1265
chr12	52885019	rs298121	C	T	4106.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:253,206:0.45:459
chr12	52885201	rs298122	C	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr12	52886478	rs376545	T	C	4457.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:217,227:0.51:444
chr12	52886490	rs711317	A	G	4515.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:226,237:0.51:463
chr12	52912906	rs641621	G	T	3766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=5.402;MLEAC=1;MLEAF=0.500;MQ=56.65;MQRankSum=-1.234;QD=15.50;ReadPosRankSum=-1.748;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:141,102:0.42:243
chr12	52912909	rs641615	G	T	3769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.766;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=8.499;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-1.280;QD=15.77;ReadPosRankSum=-1.959;SOR=1.181;set=HC	GT:AD:AF:DP	0/1:139,100:0.42:239
chr12	52913029	rs607860	C	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-0.548;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr12	52938364	rs2292507	T	C	6573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-1.225;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:275,326:0.54:601
chr12	52938497	rs10783518	A	C	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:109,119:0.52:228
chr12	52938535	rs10783519	A	G	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:63,50:0.44:113
chr12	52939407	rs10580903	AGAG	A	2120.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:52,57:0.52:109
chr12	52939994	rs11170171	T	C	2496.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:104,121:0.54:225
chr12	52941529	rs4761929	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr12	52941784	rs3839975	CAG	C	5528.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:125,147:0.54:272
chr12	52941894	rs3803083	C	T	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:146,95:0.39:241
chr12	52942235	rs12308719	G	T	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr12	52942998	rs635206	C	T	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	52943144	rs4761930	G	A	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:98,111:0.53:209
chr12	52946498	rs665470	C	T	5832.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:353,299:0.46:652
chr12	52946543	rs665522	C	T	7339.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:401,379:0.49:780
chr12	52946890	rs628819	A	G	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:28,72:0.72:100
chr12	52960884	rs75004274	C	T	6024.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:267,307:0.53:574
chr12	52961318	rs74095143	C	T	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr12	52964706	rs56182525	A	G	3127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=3.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-0.584;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:104,150:0.59:254
chr12	52964934	rs669865	T	G	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	52964978	rs73107567	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.05;ReadPosRankSum=1.656;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr12	52964981	rs73107568	A	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.12;ReadPosRankSum=1.749;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	52965173	rs670741	T	G	7613.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr12	52965722	rs673363	T	C	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr12	52965761	rs673449	C	T	14941.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr12	52965782	rs673476	T	C	14443.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr12	52966137	rs685720	T	A	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	52967436	rs11836189	G	A	7635.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:351,385:0.52:736
chr12	52980078	rs17116392	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.82;ReadPosRankSum=0.566;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	52980902	rs71443262	T	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr12	52981442	rs11170183	C	A	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:206,152:0.42:358
chr12	52984620	rs12818575	C	T	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:79,72:0.48:151
chr12	52985293	rs12824366	A	G	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:115,156:0.58:271
chr12	52986132	rs617820	T	A	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	52986187	rs12833456	T	C	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:190,208:0.52:398
chr12	52992812	rs11170187	T	C	7501.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:254,347:0.58:601
chr12	52994896	rs56207115	A	G	3634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.694;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-0.286;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:347,214:0.38:561
chr12	52995020	rs57242225	C	T	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:148,100:0.40:248
chr12	53002956	rs591636	T	C	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	53004654	rs595624	C	G	3886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=3.902;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:209,197:0.49:406
chr12	53010024	rs61736101	C	T	3978.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:298,212:0.42:510
chr12	53043636	rs632952	G	A	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:77,84:0.52:161
chr12	53045626	rs2634041	T	C	9193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=1088;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=1.475;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:583,486:0.45:1069
chr12	53045777	rs11835758	G	A	7594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=6.493;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:365,380:0.51:745
chr12	53069222	.	CACCTCCGGAGCCGTAGCTGCT	C	6617.73	.	AC=1;AF=0.500;AN=2;DP=444;set=Intersection	GT:AD:AF:DP	0/1:220,183:0.45:403
chr12	53070121	rs698170	T	G	6684.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:271,327:0.55:598
chr12	53070145	rs936958	G	A	7532.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:287,377:0.57:664
chr12	53071338	rs626480	A	G	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr12	53071382	rs2741159	A	C	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:65,66:0.50:131
chr12	53071560	rs2741158	A	G	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:137,139:0.50:276
chr12	53073471	rs3837476	C	CA	919.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr12	53085089	rs636127	T	C	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	53086645	rs3782489	G	A	4954.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:361,268:0.43:629
chr12	53089405	rs10783530	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	53089460	rs5798218	GACCC	G	3010.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	53090190	rs7138818	C	T	2509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=0.563;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:192,135:0.41:327
chr12	53091566	rs1567759	C	A	5315.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:328,277:0.46:605
chr12	53091730	rs12426129	C	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr12	53096913	rs1625862	G	A	29917.77	.	AC=2;AF=1.00;AN=2;DB;DP=1161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,1136:1.00:1136
chr12	53097263	rs73094689	C	A	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,59:0.55:107
chr12	53162773	rs1464423	A	G	19662.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.468;QD=22.37;ReadPosRankSum=-2.026;SOR=0.600;set=HC	GT:AD:AF:DP	1/1:46,833:0.95:879
chr12	53164848	rs7313832	G	A	15255.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr12	53165940	rs6580904	C	T	18480.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,706:1.00:706
chr12	53166192	rs6580905	G	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	53167313	rs7399317	T	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	53171001	rs11170272	G	A	4695.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:295,244:0.45:539
chr12	53183811	rs80023802	G	A	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:102,154:0.60:256
chr12	53186088	rs3887954	G	C	3312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.867;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=2.304;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:113,159:0.58:272
chr12	53186122	rs4432093	G	A	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.70;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr12	53187150	rs4919750	C	T	8205.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr12	53189934	rs113266197	C	T	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr12	53202380	rs2307028	T	C	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr12	53202747	rs111496774	G	A	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:112,114:0.50:226
chr12	53204614	rs2307027	C	T	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-2.195;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:88,71:0.45:159
chr12	53204757	rs10783539	T	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	53205757	rs7959052	T	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr12	53207365	rs113065432	C	T	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=0.582;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:38,25:0.40:63
chr12	53207583	rs11267392	C	CCACCAAAGCCACCAGTGCCGAAACCAGCTCCGAAGCCGCCGG	14658.73	.	AC=2;AF=1.00;AN=2;DB;DP=747;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=59.11;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:1,247:1.00:248
chr12	53207628	rs2638525	G	A	10233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=1106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.574;QD=9.35;ReadPosRankSum=-0.095;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:586,508:0.46:1094
chr12	53216184	rs4415849	A	G	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	53216989	rs17688627	G	A	6382.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:272,316:0.54:588
chr12	53217056	rs10876353	G	A	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:78,104:0.57:182
chr12	53217701	rs10876354	C	A	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:82,137:0.63:219
chr12	53217822	rs371842055	G	A	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:193,119:0.38:312
chr12	53217925	rs112904186	C	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:55,90:0.62:145
chr12	53223934	rs2682290	G	C	8182.77	.	AC=1;AF=0.500;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	0/1:425,417:0.50:842
chr12	53223948	rs2638502	C	A	9188.77	.	AC=1;AF=0.500;AN=2;DB;DP=904;set=Intersection	GT:AD:AF:DP	0/1:432,467:0.52:899
chr12	53224139	rs2638501	A	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr12	53227803	rs2638497	A	G	17909.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.81;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,694:1.00:694
chr12	53233332	rs145242098	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr12	53238079	rs183875449	A	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr12	53240584	rs2682342	A	G	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:264,192:0.42:456
chr12	53241626	rs11170287	A	G	3095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.265;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:132,147:0.53:279
chr12	53242440	rs2013335	A	G	5171.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:331,277:0.46:608
chr12	53294381	rs8608	T	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr12	53294821	rs4351899	T	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr12	53295917	rs2035875	A	G	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=2.511;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:44,64:0.59:108
chr12	53298769	rs1065306	A	G	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	53298835	rs2070910	T	G	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	53343461	rs17120866	A	AC	22827.73	.	AC=2;AF=1.00;AN=2;DB;DP=723;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=33.33;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,685:1.00:685
chr12	53344303	rs60775386	T	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr12	53346152	rs17120921	G	A	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:250,202:0.45:452
chr12	53400440	rs61927957	T	G	10310.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr12	53416119	rs7975725	T	C	6123.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	53416251	rs10506315	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	53421746	rs59856997	CT	C	5239.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:9,272:0.97:281
chr12	53432088	rs7968918	T	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	53433089	rs1548204	C	A	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	53433486	rs8916	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	53433709	rs1356993	C	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	53433788	rs1356994	A	G	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	53442956	rs12369033	G	C	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	53449321	rs7315980	G	A	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.858;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-0.868;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:79,68:0.46:147
chr12	53449735	rs2364153	T	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,37:0.59:63
chr12	53451952	rs2280446	C	T	3622.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:232,191:0.45:423
chr12	53452263	rs66607805	CCAGGTGGCAGG	C	7204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.155;QD=16.23;ReadPosRankSum=0.253;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:253,191:0.43:444
chr12	53457220	rs74088913	C	G	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:134,138:0.51:272
chr12	53457739	rs56297944	G	A	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,56:0.50:111
chr12	53459881	rs10876402	T	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	53468419	rs2277329	T	G	4884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=3.464;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:323,261:0.45:584
chr12	53470777	rs7977070	G	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	53471929	rs7302636	T	C	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.390;QD=8.76;ReadPosRankSum=0.472;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:44,41:0.48:85
chr12	53473245	rs28372672	TG	T	6231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.431;QD=16.53;ReadPosRankSum=1.385;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:190,187:0.50:377
chr12	53497801	rs2280700	A	G	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr12	53497927	rs17123210	C	G	10599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=1191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=2.414;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:632,552:0.47:1184
chr12	53498073	.	CTT	C	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=6.23;ReadPosRankSum=0.833;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:70,51:0.42:121
chr12	53499487	rs2272302	C	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr12	53499505	rs2272303	A	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr12	53499534	rs11170413	A	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:63,25:0.28:88
chr12	53499585	rs3093946	A	AAGTTCTGGATCGCTAGGCCCCATGCCTCATGTGTACATGAGGTGAGCT	4671.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.709;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=101.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=-2.277;SOR=6.137;set=HC	GT:AD:AF:DP	0/1:233,48:0.17:281
chr12	53509339	rs3219199	GC	TT	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;JOINED;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr12	53509693	rs3817536	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr12	53509933	rs2272296	C	T	5437.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:320,279:0.47:599
chr12	53552475	rs12161793	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr12	53553829	rs7969735	C	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.049;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.523;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:67,22:0.25:89
chr12	53554126	rs7956919	T	C	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:188,161:0.46:349
chr12	53554362	rs145358336	T	TTC	189.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	53554383	rs113980084	G	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	53564157	rs17124000	T	G	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:106,106:0.50:212
chr12	53567038	rs67334572	AG	A	731.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.95;MQRankSum=3.041;QD=9.76;ReadPosRankSum=-0.471;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:41,34:0.45:75
chr12	53571688	rs113269292	T	C	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=1.068;QD=5.61;ReadPosRankSum=1.456;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr12	53571738	.	TA	T	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.665;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr12	53572130	rs10876417	T	G	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.014;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:85,35:0.29:120
chr12	53573499	rs11401485	G	GT	1185.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:81,77:0.49:158
chr12	53574631	rs59218377	A	C	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:131,109:0.45:240
chr12	53580131	rs3814778	T	C	4782.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:262,248:0.49:510
chr12	53581129	rs111968755	T	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr12	53585278	rs80201470	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr12	53585602	rs6580932	G	A	3667.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:200,190:0.49:390
chr12	53586198	rs2230397	G	T	6406.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:421,336:0.44:757
chr12	53586822	rs2272299	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:82,75:0.48:157
chr12	53587468	rs2272300	T	G	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:76,55:0.42:131
chr12	53587736	rs145601608	AC	A	1316.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr12	53588180	rs884374	A	C	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,60:0.45:132
chr12	53605545	rs2229774	G	A	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-1.353;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:76,63:0.45:139
chr12	53647373	rs10876422	T	C	6266.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:312,315:0.50:627
chr12	53662624	rs6580942	C	A	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	53662735	rs4758965	C	T	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr12	53664148	rs4758963	G	A	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=3.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-1.201;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:112,110:0.50:222
chr12	53664308	rs146243389	GTTTGGGGTTGCTCCACTGCCCTCAAACAGC	G	2949.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:2,114:0.98:116
chr12	53666690	rs201728652	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr12	53666713	rs4759086	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	53670545	rs1318648	C	A	10400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=0.000;DB;DP=980;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=1.450;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:447,522:0.54:969
chr12	53671005	rs17125266	G	A	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:263,180:0.41:443
chr12	53671549	rs2272313	A	G	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:80,73:0.48:153
chr12	53677072	rs1609473	T	G	6667.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	53677089	rs4454760	G	A	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	53681883	rs1110719	A	T	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	53682267	rs3080422	CAA	C	3620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=4.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=1.492;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:112,96:0.46:208
chr12	53682326	rs1110720	G	A	2559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-0.374;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:86,128:0.60:214
chr12	53682457	rs56358776	G	A	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:59,70:0.54:129
chr12	53682986	rs3214023	C	T	8612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=1022;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-1.587;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:562,452:0.45:1014
chr12	53684619	rs61754164	A	G	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr12	53686703	rs1056685	G	A	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	53689190	rs1870240	C	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	53690188	rs59765323	CT	C	387.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=0.510;QD=14.36;ReadPosRankSum=0.464;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr12	53691962	rs2694861	C	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	53692920	rs34165644	C	CA	886.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.747;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:20,58:0.74:78
chr12	53692955	rs1020745	G	A	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	53693277	rs56249432	TG	T	550.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	53693532	rs1534284	AA	GC	13371.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr12	53700848	rs1534282	C	T	14665.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr12	53700860	rs711316	A	G	12846.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr12	53702371	rs4759287	T	C	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr12	53703021	rs1546808	G	A	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	53708011	rs7953255	G	C	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr12	53709708	rs7960963	G	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	53714290	rs4759232	T	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	53714496	rs4759231	A	G	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	53714509	rs7298879	T	G	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	53714993	rs4759020	C	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	53722098	rs7138938	A	G	13888.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:1,557:1.00:558
chr12	53722128	rs7139272	G	A	15164.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr12	53775742	rs3832826	CAA	C	50.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:12,3:0.20:15
chr12	53777171	rs3741651	A	G	13586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=1459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.366;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:752,693:0.48:1445
chr12	53818920	rs2071557	C	T	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:170,123:0.42:293
chr12	53819467	rs2071558	C	T	2450.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:152,126:0.45:278
chr12	53822670	rs3741664	G	A	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:94,52:0.36:146
chr12	53823175	rs56681678	C	CA	507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.895;QD=3.76;ReadPosRankSum=-0.358;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:85,50:0.37:135
chr12	53824143	rs11170555	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr12	53825325	rs10876455	T	C	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:136,109:0.44:245
chr12	53836696	rs35565249	GTC	G	735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.048;QD=17.52;ReadPosRankSum=0.256;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr12	53839770	rs113942405	T	TCTTTCCC	2343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.719;QD=14.93;ReadPosRankSum=-0.064;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:93,64:0.41:157
chr12	53861636	rs138035823	TA	T	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.937;QD=0.56;ReadPosRankSum=-0.735;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr12	53877562	rs784565	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	53925371	rs4759015	G	A	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	53926262	rs7307804	G	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:53,60:0.53:113
chr12	53926423	.	G	GA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=5.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-0.327;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr12	53926889	rs12422400	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.05;ReadPosRankSum=1.569;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	53946595	rs3741652	C	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	53994651	rs10876467	C	G	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:142,98:0.41:240
chr12	53994853	rs369709383	CA	C	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.422;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:44,27:0.38:71
chr12	54066271	rs10876480	C	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr12	54067544	rs2857000	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	54067603	.	CA	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.419;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:55,24:0.30:79
chr12	54069803	rs916134	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr12	54070062	rs4020138	C	CTG	6744.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr12	54116727	.	CA	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.804;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:68,32:0.32:100
chr12	54117878	rs61922775	G	A	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:78,96:0.55:174
chr12	54339052	rs4759058	C	A	3585.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:162,174:0.52:336
chr12	54348554	rs72049639	CGGGAT	C	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.84;ReadPosRankSum=-0.026;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	54348561	.	GGA	G	218.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.138;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.62;ReadPosRankSum=1.338;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	54348564	rs371089228	TGGTG	T	156.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.20;ReadPosRankSum=0.578;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	54348571	rs199806153	G	GA	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.28;ReadPosRankSum=1.152;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	54348578	rs55661050	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.364;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=0.923;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	54349023	rs199737087	G	C	2087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=4.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.964;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:108,105:0.49:213
chr12	54349365	rs10876524	C	T	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	54367061	rs4759315	T	G	8688.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr12	54369044	rs34788593	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr12	54369227	rs35418490	G	C	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr12	54385599	rs11614913	C	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:79,76:0.49:155
chr12	54394497	rs2241820	C	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:60,63:0.51:123
chr12	54428011	rs2071449	C	A	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.309;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=-0.770;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:75,64:0.46:139
chr12	54448575	rs144938914	TG	T	832.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr12	54449069	rs72272573	AAT	A,TAT	418.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.45;ReadPosRankSum=-0.701;SOR=0.407;set=HC	GT:AD:AF:DP	1/2:3,9,12:0.38,0.50:24
chr12	54496006	rs12308675	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	54496166	rs3195797	G	T	10852.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.53;QD=25.54;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,425:1.00:425
chr12	54496219	rs1133773	A	G	1867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-6.332;QD=7.62;ReadPosRankSum=-0.651;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:140,105:0.43:245
chr12	54575458	rs971	T	C	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:63,78:0.55:141
chr12	54575800	rs2233921	C	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	54651471	rs1140681	A	G	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:59,61:0.51:120
chr12	54677055	rs111503359	C	T	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:113,122:0.52:235
chr12	54677980	rs7967622	C	T	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	54687232	rs10506328	A	C	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	54734522	.	C	CT	21	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.4999;HP=11;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=21;QD=11.0;SC=ATACTTCCATCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=14;TCF=1;TCR=13;TR=3;WE=54734530;WS=54734512;set=Platypus	GT:AD:AF:DP	0/1:11,3:0.21:14
chr12	54763921	rs3215379	TG	T	320.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr12	54764618	rs2706248	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	54764962	rs2244933	G	T	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	54765005	rs3830651	TCTAA	T	1582.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	54767613	rs2706258	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	54767981	rs3832831	C	CAG	1309.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	54772755	rs2706256	C	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	54790054	.	T	C	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-0.683;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:29,32:0.52:61
chr12	54798011	rs112896207	C	T	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:200,136:0.40:336
chr12	54799450	rs1249378	A	G	9877.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr12	54802493	.	CA	C	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.368;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.096;QD=2.79;ReadPosRankSum=0.189;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:38,34:0.47:72
chr12	54805753	rs1922254	G	T	15486.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr12	54805765	rs1249181	C	T	15234.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr12	54856087	rs145528050	TCCTG	T	310.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	54856358	rs12306947	T	C	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:76,70:0.48:146
chr12	54905815	rs2458409	C	G	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:114,110:0.49:224
chr12	54910837	rs1691630	G	A	7114.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	54911768	rs1795838	C	T	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=1.779;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	54920288	.	A	AT	704.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.058;QD=6.47;ReadPosRankSum=1.072;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:59,50:0.46:109
chr12	54925750	rs10747697	A	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	54930914	rs2036067	A	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:80,63:0.44:143
chr12	54932788	rs4758966	T	C	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	54955324	rs10747699	T	C	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr12	54955461	rs9668037	A	G	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	54955545	rs3036634	C	CGT	734.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr12	54955647	rs1552957	G	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	54963491	rs71070829	C	CT	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=2.007;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr12	54963907	rs1153138	T	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=1.639;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr12	54968758	.	CA	C	192.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.193;QD=2.41;ReadPosRankSum=0.569;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:47,33:0.41:80
chr12	54969998	rs1249949	A	G	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	54970454	rs1249950	T	C	11142.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr12	54971347	rs1249951	C	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	54975837	rs1249958	T	C	6000.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	54976456	rs11837630	C	T	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=-0.012;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:37,37:0.50:74
chr12	55002014	rs1795819	C	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	55002053	rs1795818	C	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr12	55002065	rs1716356	G	A	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	55002409	rs11170988	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr12	55004150	rs937308	C	A	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	55028808	rs11832807	C	A	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	55039144	rs7966668	A	G	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr12	55039817	rs5798318	TG	T	4327.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	55041079	rs903768	T	A	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	55248206	rs2306851	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr12	55248357	rs1048371	G	T	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:128,100:0.44:228
chr12	55248739	rs10783684	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr12	55249002	rs7133564	A	G	5346.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:274,273:0.50:547
chr12	55250549	rs10783685	T	G	7818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=841;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-1.698;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:445,390:0.47:835
chr12	55250612	rs1349910	A	G	39878.77	.	AC=2;AF=1.00;AN=2;DB;DP=1581;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,1565:1.00:1565
chr12	55250714	rs10876639	G	A	3453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=0.147;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:237,167:0.41:404
chr12	55252202	rs1948139	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	55360316	rs12304999	T	C	2457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=-2.701;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:189,132:0.41:321
chr12	55420272	rs146025088	A	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:60,50:0.45:110
chr12	55421250	rs2656804	C	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr12	55421299	rs2243885	C	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	55688267	rs7308594	G	A	4595.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:206,222:0.52:428
chr12	55714772	rs7132431	G	A	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:203,208:0.51:411
chr12	55714876	rs7132347	C	G	2248.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:129,115:0.47:244
chr12	55715048	rs7132600	C	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:164,146:0.47:310
chr12	55715119	rs7132916	G	A	6556.77	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:356,337:0.49:693
chr12	55725690	rs4318060	C	T	2760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.669;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:163,144:0.47:307
chr12	55758832	rs7962135	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr12	55759878	rs10876751	A	G	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr12	55794264	rs7967395	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr12	55794976	rs7971073	A	G	4563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.605;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:192,223:0.54:415
chr12	55805647	rs12825123	A	G	8070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-1.778;QD=10.91;ReadPosRankSum=-1.111;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:338,402:0.54:740
chr12	55806134	rs12833263	T	C	6326.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:280,318:0.53:598
chr12	55806437	rs114890660	T	C	5895.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:347,295:0.46:642
chr12	55807293	rs3887805	A	G	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.535;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=22.450;MLEAC=1;MLEAF=0.500;MQ=50.06;MQRankSum=-3.492;QD=1.42;ReadPosRankSum=-4.367;SOR=2.350;set=HC	GT:AD:AF:DP	0/1:375,74:0.16:449
chr12	55807588	rs12826694	C	T	4605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.538;ClippingRankSum=0.000;DB;DP=1200;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=48.08;MQRankSum=-12.444;QD=3.84;ReadPosRankSum=-1.193;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:875,324:0.27:1199
chr12	55808469	rs7132076	C	G	3117.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:108,148:0.58:256
chr12	55820958	rs57387180	CA	C	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.829;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr12	55846623	rs11171467	T	C	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:150,135:0.47:285
chr12	55863381	rs10747756	A	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:74,61:0.45:135
chr12	55944926	rs7313959	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	55945119	rs7313899	A	G	26790.77	.	AC=2;AF=1.00;AN=2;DB;DP=1067;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,1048:1.00:1048
chr12	55968994	rs17117692	G	C	4323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=10.44;ReadPosRankSum=0.598;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:198,216:0.52:414
chr12	55969028	rs17117696	C	T	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:169,164:0.49:333
chr12	56030921	rs7305623	G	A	5335.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:321,272:0.46:593
chr12	56030938	rs10876838	C	T	6855.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:330,339:0.51:669
chr12	56031273	rs7970885	G	A	10598.77	.	AC=1;AF=0.500;AN=2;DB;DP=977;set=Intersection	GT:AD:AF:DP	0/1:440,521:0.54:961
chr12	56031338	rs77750365	C	T	8464.77	.	AC=1;AF=0.500;AN=2;DB;DP=963;set=Intersection	GT:AD:AF:DP	0/1:517,433:0.46:950
chr12	56031611	rs11171631	A	G	3553.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:183,181:0.50:364
chr12	56075915	rs75289684	C	A	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:152,158:0.51:310
chr12	56077768	rs115687886	C	T	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=1.150;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:84,63:0.43:147
chr12	56079084	rs3852533	C	G	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:215,126:0.37:341
chr12	56080148	rs3782239	T	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:80,60:0.43:140
chr12	56080164	rs7306191	T	G	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr12	56082506	rs35887029	CA	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.038;QD=3.26;ReadPosRankSum=0.851;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr12	56082785	rs3782240	C	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr12	56088206	rs7953669	T	C	5660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=1.613;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:369,296:0.45:665
chr12	56088773	rs2293410	C	T	5898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=1.700;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:263,301:0.53:564
chr12	56089357	rs1800974	C	T	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:145,160:0.52:305
chr12	56089554	rs2293411	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-0.823;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	56090038	rs7974721	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr12	56091617	rs2293412	A	G	12128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=1561;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-1.189;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:882,663:0.43:1545
chr12	56093817	rs11171660	T	G	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:71,68:0.49:139
chr12	56096600	rs149446335	AAC	A	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.443;QD=1.57;ReadPosRankSum=0.277;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:184,30:0.14:214
chr12	56096816	rs2293413	T	C	6166.77	.	AC=1;AF=0.500;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	0/1:427,335:0.44:762
chr12	56115585	rs3138142	C	T	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:134,152:0.53:286
chr12	56115778	rs3138141	C	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	56117570	rs3138136	C	T	3166.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:121,152:0.56:273
chr12	56120096	rs35746357	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr12	56137184	.	CGCG	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=4.243;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.972;QD=1.17;ReadPosRankSum=1.736;SOR=1.331;set=HC	GT:AD:AF:DP	0/1:104,12:0.10:116
chr12	56188459	rs146371642	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.579;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr12	56213297	rs56108400	G	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,62:0.65:96
chr12	56213978	.	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.13;ReadPosRankSum=2.028;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	56220974	.	CAA	C,CA	1264.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.068;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=2.372;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=0.125;SOR=0.368;set=HC	GT:AD:AF:DP	1/2:20,50,44:0.44,0.39:114
chr12	56230885	rs17118042	G	T	3359.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:241,184:0.43:425
chr12	56232656	.	A	G	263.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr12	56236043	rs2291268	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	56236318	rs7310325	T	C	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	56236531	rs7294345	A	G	8272.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr12	56295544	rs147424544	GAAGT	G	2218.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	56295734	rs7302270	A	G	8061.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	56298115	rs61956424	T	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=42.60;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	56298120	rs61956425	A	G	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=44.41;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	56326493	rs63702363	GCACACA	G,GCACA	1423.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=28.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:2,25,23:0.50,0.46:50
chr12	56330572	rs7297871	G	A	10770.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr12	56334801	rs150653651	C	A	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:38,64:0.63:102
chr12	56335107	rs1136082	A	G	9327.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr12	56335150	rs2291615	G	A	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:90,121:0.57:211
chr12	56348028	rs1052206	G	A	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	56350716	rs17118152	C	T	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr12	56351346	rs1052165	G	A	7308.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:271,358:0.57:629
chr12	56363222	rs73123218	A	G	3033.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:105,151:0.59:256
chr12	56398454	rs773115	G	C	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:113,98:0.46:211
chr12	56415472	.	CTG	C	103.74	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	56417403	rs2658479	T	C	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:70,68:0.49:138
chr12	56420473	.	C	CA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-1.233;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr12	56426577	rs1619653	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr12	56428344	rs2452822	G	C	3793.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:202,187:0.48:389
chr12	56435929	rs1131017	C	G	4733.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:280,247:0.47:527
chr12	56436472	rs705706	T	G	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-1.762;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chr12	56477694	rs2271194	A	T	2492.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:72,118:0.62:190
chr12	56478658	rs7971751	A	C	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.557;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=0.100;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:19,35:0.65:54
chr12	56482180	rs2292239	T	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	56502908	.	C	CA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=4.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-1.926;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	56510922	.	C	CT	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.688;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:57,40:0.41:97
chr12	56528118	rs2292237	A	G	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:90,103:0.53:193
chr12	56528385	rs36091576	A	AT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.447;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr12	56556167	.	T	TA	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.624;ClippingRankSum=0.000;DP=465;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=6.921;QD=0.39;ReadPosRankSum=2.578;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:318,61:0.16:379
chr12	56564056	rs60041436	CTTTT	C	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.000;QD=7.10;ReadPosRankSum=0.555;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr12	56575742	rs773644	T	G	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,64:0.45:143
chr12	56583165	rs148514904	C	T	9725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=998;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=1.157;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:475,510:0.52:985
chr12	56601237	rs703823	A	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr12	56604416	rs10532115	GAT	G	1179.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr12	56604420	rs79677444	T	C	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr12	56607927	rs4759218	C	T	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:92,72:0.44:164
chr12	56625045	rs1274497	T	C	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:185,179:0.49:364
chr12	56629276	rs901073	A	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr12	56647911	rs808919	G	C	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:205,193:0.48:398
chr12	56649601	rs1274490	A	G	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr12	56650742	rs1274491	C	T	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	56704152	rs10783780	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	56711371	rs3809129	C	T	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:81,72:0.47:153
chr12	56717466	rs773665	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr12	56722060	rs1918496	T	G	3284.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:137,166:0.55:303
chr12	56726518	rs2643626	G	A	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,48:0.46:105
chr12	56737973	rs2066808	A	G	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:86,96:0.53:182
chr12	56739869	rs147742766	C	T	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:200,142:0.42:342
chr12	56742997	rs2066811	T	C	5221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=0.100;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:333,274:0.45:607
chr12	56743367	rs2020854	T	C	4704.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:256,243:0.49:499
chr12	56744276	rs11575234	C	G	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:198,173:0.47:371
chr12	56755058	rs4301822	A	G	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:179,180:0.50:359
chr12	56755120	rs11575218	T	C	3923.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:172,195:0.53:367
chr12	56814256	rs10631263	G	GGAT	2302.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	56814570	rs812279	T	G	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:116,85:0.42:201
chr12	56814653	rs2291739	G	A	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:93,112:0.55:205
chr12	56815922	rs774047	C	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:100,102:0.50:202
chr12	56816814	rs774048	C	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr12	56818982	rs12824030	G	C	1522.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	56818983	rs35382350	C	CT	357.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr12	56821998	rs774026	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	56822071	rs61752460	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-1.705;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:34,32:0.48:66
chr12	56822378	rs774027	T	A	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:178,123:0.41:301
chr12	56822641	rs774028	G	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	56825311	rs774033	C	T	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:269,214:0.44:483
chr12	56825981	rs774039	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	56826061	rs774040	G	A	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	56826758	rs142212258	A	AG	735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.458;MLEAC=1;MLEAF=0.500;MQ=62.77;MQRankSum=4.002;QD=8.46;ReadPosRankSum=4.918;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:49,38:0.44:87
chr12	56827694	rs2279665	C	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,47:0.47:101
chr12	56827974	rs2638312	C	T	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr12	56845296	rs2643622	T	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	56862886	rs2657881	T	C	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	56865338	rs2657879	A	G	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=2.230;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:120,81:0.40:201
chr12	56866334	rs2638314	T	A	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	56866962	rs2657878	C	T	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr12	56869577	rs5798384	C	CT	2632.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,82:0.67:123
chr12	56869949	rs34325581	C	CT	427.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr12	56869971	rs79174190	TTTGTCACCC	T	1224.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	56871314	rs11171862	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-1.735;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr12	56872770	rs57130421	GAA	G,GA	1154.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.89;MQRankSum=0.000;QD=11.43;ReadPosRankSum=2.137;SOR=0.668;set=HC	GT:AD:AF:DP	1/2:17,55,29:0.54,0.29:101
chr12	56915782	rs808929	G	A	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	56933651	rs2657902	G	A	2339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.924;QD=10.78;ReadPosRankSum=2.108;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:101,116:0.53:217
chr12	56933722	rs2657903	G	A	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr12	56956213	rs3759091	T	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr12	56982290	rs2470385	C	T	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	56992377	rs7970523	A	C	6909.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:271,345:0.56:616
chr12	56994331	.	G	GA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=1.072;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:94,19:0.17:113
chr12	56999549	.	C	CT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.521;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr12	56999656	rs369586338	T	C	2662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.679;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:112,135:0.55:247
chr12	57065713	rs2958154	C	T	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	57106660	rs4788	A	T	14984.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr12	57106810	rs898609	G	A	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	57108203	rs4902	A	G	8857.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	57109792	rs2958149	A	G	11215.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr12	57109931	rs2926747	A	T	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	57111880	.	GGGGGTGGGGTAGCTAGACCTCCTTTTGGGGAGGGAGGAGTTGCAGCTGGGGTTGTGGGTGCCCCTTTGT	G	492.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.87;MQRankSum=-0.570;QD=14.49;SOR=0.247;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr12	57111912	.	G	A	67	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=2;MGOF=21;MMLQ=27;MQ=51.44;NF=3;NR=3;PP=67;QD=16.9618687579;SC=CTTTTGGGGAGGGAGGAGTTG;SbPval=0.6;Source=Platypus;TC=15;TCF=8;TCR=7;TR=6;WE=57111920;WS=57111902;set=Platypus	GT:AD:AF:DP	1/0:9,6:0.40:15
chr12	57112637	rs11171951	G	A	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	57114100	rs2926743	A	G	6438.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	57114307	rs2958127	A	T	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	57123039	.	CA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.127;QD=1.73;ReadPosRankSum=0.338;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr12	57132186	rs56401813	AT	A	3433.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.00;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	57133140	rs1131514	T	G	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,129:0.98:131
chr12	57137828	rs1026565	T	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	57139722	rs11331084	CA	C	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.287;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr12	57140449	.	CACACACACACAA	C	47.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=1.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.914;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr12	57140451	.	CACACACACAA	C	232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.460;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=4.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=1.536;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr12	57140457	rs63023761	CACAA	C	407.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-2.023;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr12	57140506	rs2958130	G	A	13106.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.12;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr12	57346828	rs4319546	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	57486647	rs324019	A	G	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr12	57492996	rs841718	G	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	57494880	.	C	CT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=1.832;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr12	57502182	rs324011	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	57537672	rs185694830	C	T	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:168,123:0.42:291
chr12	57539082	rs1800127	C	T	9974.77	.	AC=1;AF=0.500;AN=2;DB;DP=1041;set=Intersection	GT:AD:AF:DP	0/1:522,506:0.49:1028
chr12	57569478	rs12814239	C	T	4414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=1.089;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:247,218:0.47:465
chr12	57581028	rs6581127	C	G	16300.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr12	57585144	rs1800139	C	T	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr12	57587839	rs1800187	C	T	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	57589784	rs7397167	A	C	25698.77	.	AC=2;AF=1.00;AN=2;DB;DP=966;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,957:1.00:957
chr12	57589865	rs1800189	C	T	25150.77	.	AC=2;AF=1.00;AN=2;DB;DP=957;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,949:1.00:949
chr12	57590735	rs7308552	T	C	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	57590869	rs7308698	T	C	18347.77	.	AC=2;AF=1.00;AN=2;DB;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,722:1.00:722
chr12	57592557	rs1800168	C	T	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	57593101	rs1140648	G	A	18413.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr12	57593894	rs1800159	A	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	57602815	rs7956957	C	G	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	57604802	rs1800164	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	57605168	rs10783814	T	C	20206.77	.	AC=2;AF=1.00;AN=2;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,776:1.00:776
chr12	57606386	rs7304504	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	57610616	.	GCCGCCGCTC	G	685.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	57614958	rs7134826	G	T	17940.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,703:1.00:703
chr12	57618853	rs201872894	G	A	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:125,108:0.46:233
chr12	57619209	rs7979061	C	G	8335.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr12	57637593	rs3204635	G	A	24445.77	.	AC=2;AF=1.00;AN=2;DB;DP=986;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,949:1.00:949
chr12	57639190	rs7139342	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	57649840	rs4075325	C	T	10788.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr12	57652963	rs6581131	G	A	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	57693060	rs4760126	G	A	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	57704005	rs57612216	GA	G	3972.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:13,213:0.94:226
chr12	57829129	rs560048	C	T	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	57843014	rs776037	C	T	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	57843711	rs2229357	G	A	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:79,99:0.56:178
chr12	57848639	rs3809114	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr12	57848708	rs3809113	C	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:69,71:0.51:140
chr12	57849768	rs507562	C	G	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr12	57857354	rs10876987	T	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr12	57857622	rs202216082	C	G	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:144,126:0.47:270
chr12	57858414	rs3817475	A	G	5841.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:260,304:0.54:564
chr12	57858835	rs3817474	G	A	2803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-0.808;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:130,140:0.52:270
chr12	57859431	rs2228225	G	A	4559.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:194,224:0.54:418
chr12	57859932	rs2292657	G	A	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:82,129:0.61:211
chr12	57865321	rs2228224	G	A	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:158,154:0.49:312
chr12	57865821	rs2228226	G	C	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:95,122:0.56:217
chr12	57865928	rs474058	A	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	57868132	rs145106882	C	T	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:90,89:0.50:179
chr12	57869241	rs527226	T	C	6879.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr12	57869447	rs2277318	T	C	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:68,93:0.58:161
chr12	57869476	rs2277317	G	A	2677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.28;ReadPosRankSum=0.196;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:44,71:0.62:115
chr12	57869486	rs2277316	A	G	2478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.17;ReadPosRankSum=0.234;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:41,66:0.62:107
chr12	57869500	rs524522	A	C	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	57869530	rs3216740	CA	C	2113.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:81,73:0.47:154
chr12	57869582	rs2277315	T	C	3886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.761;QD=9.69;ReadPosRankSum=-2.040;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:203,198:0.49:401
chr12	57870121	rs486699	A	C	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	57870155	rs11544238	A	C	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:107,118:0.52:225
chr12	57870463	rs10706671	AG	A	6389.73	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:154,189:0.55:343
chr12	57870648	rs512490	A	G	2116.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.597;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.33;ReadPosRankSum=1.146;SOR=0.684;set=HC	GT:AD:AF:DP	1/1:1,86:0.99:87
chr12	57871555	rs3825080	A	G	6744.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	57882764	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.979;QD=0.20;ReadPosRankSum=-0.828;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:137,32:0.19:169
chr12	57883801	rs899653	G	A	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	57891804	rs537161	T	C	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	57905687	rs1284467	A	G	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr12	57920262	rs2127318	T	G	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	57921866	rs117084250	C	T	4604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=1.976;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:276,240:0.47:516
chr12	57940749	rs775325	C	T	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	57958313	rs775322	A	G	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	57961444	rs371727146	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.299;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr12	57974670	rs775245	G	A	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr12	57975155	rs775246	A	C	5745.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:213,278:0.57:491
chr12	57975570	rs775247	A	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	57975910	rs775248	C	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr12	57977003	rs775249	C	T	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:121,108:0.47:229
chr12	57977040	rs775250	C	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr12	57979190	rs1678536	C	G	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:145,114:0.44:259
chr12	57985204	rs11537654	C	T	6380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.734;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=2.324;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:395,326:0.45:721
chr12	57994743	rs775235	T	G	8279.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr12	57995089	rs812873	T	C	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	58000378	rs703834	G	A	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	58002599	rs2306390	C	T	7749.77	.	AC=1;AF=0.500;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	0/1:393,394:0.50:787
chr12	58003922	rs10437954	G	A	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	58004274	rs148232702	TGA	T	1308.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr12	58004563	rs7314872	C	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr12	58005837	rs116953253	T	A	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:171,171:0.50:342
chr12	58008952	rs703833	C	T	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	58009202	rs2277322	T	C	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	58010163	rs1564374	A	G	8082.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr12	58017701	rs7314152	T	G	6609.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr12	58018979	rs1871417	C	T	9467.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr12	58019472	rs774895	T	G	7776.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr12	58021913	rs151177784	G	A	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:154,197:0.56:351
chr12	58090301	rs12426511	G	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr12	58109379	rs117978598	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	58111575	rs10540982	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.18;ReadPosRankSum=-0.281;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	58124534	rs2301551	C	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr12	58124803	rs238523	C	T	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	58127766	rs238526	T	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	58135659	rs238530	T	C	9735.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr12	58145156	rs2270777	C	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:106,86:0.45:192
chr12	58149446	rs1689582	C	T	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	58150989	rs35101706	CCA	C	2626.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr12	58157348	rs183213602	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr12	58177379	.	C	CT	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.799;QD=1.09;ReadPosRankSum=0.223;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:151,43:0.22:194
chr12	58181107	.	C	T	583.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr12	58190185	rs146777264	T	A	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:122,128:0.51:250
chr12	58202419	rs2277326	C	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	58203264	rs12582311	A	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr12	58204283	rs2172521	T	C	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	58339610	rs12822306	T	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr12	58339649	rs34127224	GT	G	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.524;QD=3.97;ReadPosRankSum=-2.823;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	58345606	rs17120203	T	C	9948.77	.	AC=1;AF=0.500;AN=2;DB;DP=870;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:366,497:0.58:863
chr12	58347320	rs12816216	T	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr12	58350631	rs10122	C	T	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:45,65:0.59:110
chr12	59197223	rs1148531	A	G	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	59199648	rs1497232	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr12	59274081	rs34709985	C	CAA	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-1.006;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr12	59279589	rs11172795	G	A	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=1.877;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:58,44:0.43:102
chr12	59279660	rs11172796	A	T	1929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.224;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:109,104:0.49:213
chr12	59280742	rs10877182	A	G	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:79,111:0.58:190
chr12	59280828	rs10877183	C	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr12	59307625	rs10877187	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.80;ReadPosRankSum=1.515;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	59307636	rs10783927	T	A	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr12	59307957	rs11834094	C	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=1.025;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr12	59308003	rs11172820	C	T	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=1.101;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:56,63:0.53:119
chr12	59313151	rs12426955	G	T	1379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-1.802;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:108,75:0.41:183
chr12	59313248	rs12426969	G	A	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.335;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:97,85:0.47:182
chr12	59313936	rs61754220	T	G	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=0.804;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:110,84:0.43:194
chr12	59917023	rs12580155	T	A	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	59917126	rs12580166	T	A	13589.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr12	60113729	rs1693605	G	A	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	60113910	rs1795893	A	G	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr12	60113936	rs35527852	C	CAG	1416.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr12	60127590	rs2706309	A	T	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	60127612	rs2711672	G	A	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	60129896	rs2706306	A	T	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	60129918	rs12824395	G	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	60161839	rs139829485	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	60161941	rs35166468	G	GA	1332.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,60:0.56:107
chr12	60169265	rs12718000	G	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:74,49:0.40:123
chr12	60173356	rs3763980	A	T	3737.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:226,190:0.46:416
chr12	60173406	rs3763979	C	T	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:116,132:0.53:248
chr12	62114671	rs7485027	T	C	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:148,206:0.58:354
chr12	62705960	rs17120331	A	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	62708442	rs10877825	G	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	62778065	rs2044846	A	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.667;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:20,29:0.59:49
chr12	62783843	rs17097891	C	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr12	62785524	rs1532435	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=0.328;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	62810962	rs10459254	G	A	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr12	62861111	rs6581450	T	C	10050.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr12	62883990	rs11393430	C	CT	2135.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	62887939	.	G	A	81.77	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	62888729	rs7135893	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	62892905	rs4025987	C	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	62902420	rs7294404	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	62926398	rs7957417	G	A	4180.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:261,216:0.45:477
chr12	62928633	rs10219555	G	A	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:116,97:0.46:213
chr12	62928747	rs11364534	TA	T	3987.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr12	62931083	rs73141045	C	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr12	62931091	rs148881304	CTTG	C	1227.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr12	62931846	rs147032464	ATTTGT	A	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr12	62943371	rs10877874	G	A	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=0.971;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr12	62965149	rs2270732	T	C	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr12	62979216	rs11174557	G	A	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:256,210:0.45:466
chr12	62986620	rs12357	G	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr12	62997180	rs10877887	T	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=-1.330;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	62997643	rs7302456	G	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr12	63042421	rs78348779	A	G	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr12	63359011	rs699595	A	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	63359549	rs143590555	ACTGCTG	A	12336.73	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr12	63543574	.	T	TCA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=10.125;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.558;QD=1.36;ReadPosRankSum=3.510;SOR=2.329;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr12	63543576	rs59713720	T	A	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=7.144;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.795;QD=8.04;ReadPosRankSum=5.072;SOR=1.892;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr12	63543578	rs10784341	T	A	1979.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=5.721;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.597;QD=27.12;ReadPosRankSum=4.773;SOR=1.647;set=HC	GT:AD:AF:DP	0/1:13,60:0.82:73
chr12	63544209	rs1042615	A	G	19751.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	1/1:1,753:1.00:754
chr12	63954300	rs12314553	C	T	9670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.855;QD=17.62;ReadPosRankSum=-1.513;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:294,255:0.46:549
chr12	63954304	rs1054891	T	C	9689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.893;QD=17.33;ReadPosRankSum=-0.530;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:303,256:0.46:559
chr12	63984999	rs55743108	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr12	64011062	rs4105524	A	G	4698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-0.351;QD=10.21;ReadPosRankSum=0.613;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:222,238:0.52:460
chr12	64041195	rs55655430	C	CATAATA,CATAATAATA	924.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=49.52;QD=40.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:0,15,8:0.65,0.35:23
chr12	64055269	rs55665893	T	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr12	64055347	rs112964973	G	GA	170.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr12	64061745	rs11175110	C	G	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr12	64062023	rs10878073	A	C	5078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.924;QD=10.41;ReadPosRankSum=0.743;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:234,254:0.52:488
chr12	64062052	rs10878074	G	A	6458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.943;QD=10.40;ReadPosRankSum=-0.369;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:301,320:0.52:621
chr12	64062065	rs10878075	T	C	6528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.991;QD=10.17;ReadPosRankSum=0.951;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:319,323:0.50:642
chr12	64118558	rs3864455	A	G	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:70,82:0.54:152
chr12	64173807	rs61935924	G	A	14487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=1725;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-0.145;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:933,777:0.45:1710
chr12	64383670	rs3741607	T	C	2418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.312;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.578;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:132,127:0.49:259
chr12	64472803	rs789710	A	T	10327.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr12	64485593	rs5798729	A	ACC	1625.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	64519806	rs789722	T	C	4421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=1.222;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:282,236:0.46:518
chr12	64521567	rs10878106	C	G	6600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-0.803;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:363,339:0.48:702
chr12	64587633	rs699638	C	A	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	64609562	rs2335390	C	T	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	64661209	rs1657057	AT	CC	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	64669018	rs5798743	AT	A	432.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	64669090	rs1002392	C	A	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	64669270	rs10878132	C	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	64671412	rs3057140	C	CTATA,CTATATA	4540.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=36.92;ReadPosRankSum=2.611;SOR=1.101;set=HC	GT:AD:AF:DP	1/2:4,87,32:0.71,0.26:123
chr12	64697635	rs10878142	T	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	64712511	rs7955105	A	G	8774.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr12	64746924	rs11434916	G	GT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.454;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr12	64833249	rs10878172	A	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	64838752	rs71092967	TA	T	693.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=8.26;ReadPosRankSum=0.470;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:24,60:0.71:84
chr12	64838922	rs6581565	G	T	7429.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.194;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=0.000;QD=25.27;ReadPosRankSum=-1.000;SOR=0.249;set=HC	GT:AD:AF:DP	1/1:1,293:1.00:294
chr12	64858100	rs57810028	A	AT	1327.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr12	64875787	rs7486100	T	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	64883761	rs10878177	C	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	64891401	rs71092972	C	CT	649.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.563;QD=11.40;ReadPosRankSum=-0.677;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,45:0.79:57
chr12	65004316	rs3741747	T	C	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr12	65004387	rs3741748	C	T	5176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.447;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:267,266:0.50:533
chr12	65134536	rs1690277	C	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	65146532	rs1147096	C	T	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=1.135;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:43,41:0.49:84
chr12	65146676	rs1147095	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr12	65150485	rs2620733	C	T	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:162,117:0.42:279
chr12	65218576	.	G	A	100.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr12	65222347	rs1144426	C	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr12	65270436	rs7311657	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr12	65449071	rs1026025	A	G	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	65462429	rs34245453	ATGTG	A,ATG	2484.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.619;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.297;QD=29.58;ReadPosRankSum=-0.401;SOR=0.448;set=HC	GT:AD:AF:DP	1/2:4,55,25:0.65,0.30:84
chr12	65477609	.	C	CTCTTTTCTTTTCTTTTCTTTTCTTTTCTTT	630.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.36;QD=45.05;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	65609675	rs67170565	G	GT	134.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.37;ReadPosRankSum=-1.050;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr12	65609707	rs34604927	G	GT	219.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	65633822	.	G	T	661.77	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr12	65633880	rs34562240	GTGAT	G	1372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.15;ReadPosRankSum=0.051;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:48,37:0.44:85
chr12	65639615	rs3217456	ATTTT	A	1153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.77;ReadPosRankSum=-1.016;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr12	65762703	rs57910895	AC	A	1838.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=12.86;ReadPosRankSum=1.659;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:46,97:0.68:143
chr12	66308644	rs10878345	A	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr12	66517828	rs2464304	T	A	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	66531694	rs1185629	A	G	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	66597701	rs1882200	C	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr12	66603399	rs11465955	C	T	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr12	66605228	rs1152888	A	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	66696255	rs3741605	T	C	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	66696410	rs3741604	C	T	16117.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,621:1.00:621
chr12	66698438	rs2118139	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	66698461	rs2118140	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	66698895	rs4430553	T	C	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	66698954	rs1971302	C	G	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	66716345	rs68047161	CAAA	C	1119.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.99;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	66716618	rs67946726	G	GT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-1.107;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:120,23:0.16:143
chr12	66717692	rs7969887	T	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	66717716	rs7957877	C	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	66786073	rs7970076	A	G	6242.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	66786091	rs13277	G	C	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr12	66786341	rs7970771	G	A	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	66786644	rs2270594	G	A	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	66814466	rs7397861	C	G	2179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-1.115;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:212,128:0.38:340
chr12	66814487	rs7397862	C	A	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=0.676;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:217,124:0.36:341
chr12	66826527	rs143524823	GAAGT	G	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	66826555	rs6581694	A	G	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	66838243	rs10878422	A	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.59;MQRankSum=-0.798;QD=8.45;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	66838272	rs63070262	C	CAA	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=9.155;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-1.506;QD=5.97;ReadPosRankSum=0.144;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:31,50:0.62:81
chr12	66849408	rs1038923	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	66856975	.	AAAAT	A	531	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=4;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=8;PP=531;QD=70.0;SC=TCATTTACTTAAAATAAAAGA;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=8;WE=66856992;WS=66856965;set=Platypus	GT:AD:AF:DP	1/0:8,8:0.50:16
chr12	66856978	rs3830371	AT	A	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=-0.979;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	66856981	rs144154456	AAAG	A	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=-0.938;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr12	66856984	.	G	A	525	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=8;HapScore=4;MGOF=2;MMLQ=28;MQ=60.0;NF=1;NR=8;PP=525;QD=62.1968013941;SC=TAAAATAAAAGAAAAGAAAAG;SbPval=0.65;Source=Platypus;TC=18;TCF=2;TCR=16;TR=9;WE=66856992;WS=66856965;set=Platypus	GT:AD:AF:DP	1/0:9,9:0.50:18
chr12	66859146	rs199634200	C	T	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:157,135:0.46:292
chr12	66859221	rs12820901	T	C	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:47,64:0.58:111
chr12	66909389	rs12316942	C	T	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:179,188:0.51:367
chr12	66911771	rs11838180	G	T	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:144,127:0.47:271
chr12	66932832	rs66522623	T	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,51:0.57:89
chr12	67701103	rs812325	G	A	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	67706466	rs1060350	G	A	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr12	68045403	rs10878641	G	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:64,62:0.49:126
chr12	68052178	rs3741644	G	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:87,84:0.49:171
chr12	68552041	rs2234686	TA	T	285.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr12	68595719	rs10748100	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr12	68595787	rs10748101	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr12	68619604	rs11570915	G	A	3886.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:188,199:0.51:387
chr12	69042690	rs3213921	T	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr12	69080728	rs2259702	T	G	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	69080770	rs187986843	TC	CT	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;JOINED;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr12	69082650	rs35079356	CT	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.59;ReadPosRankSum=-0.827;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr12	69082669	rs2259592	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	69082805	rs2259588	G	A	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:106,92:0.46:198
chr12	69083237	rs2546509	A	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr12	69084272	rs71452399	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	69090684	rs35054844	A	G	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr12	69090754	rs2701088	A	G	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr12	69090803	rs2546527	G	C	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.09;ReadPosRankSum=1.981;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	69109617	rs2701097	T	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	69113568	.	T	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.42;ReadPosRankSum=-0.751;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	69115698	rs17851475	G	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:128,101:0.44:229
chr12	69119609	rs200269567	T	TTG	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=-0.994;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	69119617	.	G	GGTTTT	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=0.899;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr12	69125513	rs7976871	GG	TT	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	0/1:80,68:0.46:148
chr12	69125578	rs7976687	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr12	69127500	rs35315224	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr12	69139972	rs35090239	A	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr12	69160523	rs10878868	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr12	69207162	rs1470383	G	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	69233215	rs769412	A	G	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:112,92:0.45:204
chr12	69250548	rs3741598	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,42:0.44:96
chr12	69260779	rs33925480	C	T	10765.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,424:1.00:424
chr12	69279736	rs2701085	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	69326547	rs7978197	C	T	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:175,118:0.40:293
chr12	69633379	rs2305642	A	G	2794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.228;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.165;QD=11.69;ReadPosRankSum=-0.525;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:97,142:0.59:239
chr12	69645864	rs490872	A	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr12	69646914	rs2305641	G	A	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.292;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:67,50:0.43:117
chr12	69652336	rs5798930	G	GT	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.794;QD=10.87;ReadPosRankSum=1.918;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:20,35:0.64:55
chr12	69653146	rs2231700	T	C	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:91,98:0.52:189
chr12	69667075	rs1463335	T	A	1307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.098;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:70,68:0.49:138
chr12	69753595	rs622656	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr12	69753830	rs623853	G	A	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:135,117:0.46:252
chr12	69753847	rs554591	T	C	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:118,88:0.43:206
chr12	69756762	rs10784775	G	A	1234.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.168;MLEAC=2;MLEAF=1.000;MQ=59.30;MQRankSum=-0.159;QD=22.05;ReadPosRankSum=-0.658;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:1,55:0.98:56
chr12	69759551	rs11286051	AT	A	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.502;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.734;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:56,32:0.36:88
chr12	69764388	rs2291005	A	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr12	69978623	rs12319536	A	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.650;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	69980028	rs485288	G	A	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=0.765;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:128,95:0.43:223
chr12	69980141	rs484319	G	C	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.271;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:51,45:0.47:96
chr12	69980447	.	C	CA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=4.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-0.269;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr12	69981111	rs11177732	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	69981862	rs530701	G	A	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr12	69986788	rs1043434	A	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr12	69987494	rs710773	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr12	69991568	rs3217625	AAT	A	1477.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,51:0.40:128
chr12	69991627	rs710765	C	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr12	69991660	rs11832926	A	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr12	69995039	rs11177742	C	A	3602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=1.258;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:230,192:0.45:422
chr12	69995273	rs7200	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr12	70048829	rs17106884	T	C	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,63:0.52:121
chr12	70065126	rs5798946	CT	C	639.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.510;QD=12.30;ReadPosRankSum=0.383;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:8,44:0.85:52
chr12	70070942	rs710718	A	G	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr12	70072479	rs3741755	C	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:82,61:0.43:143
chr12	70078172	rs710714	C	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	70078575	rs12425422	T	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=0.126;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr12	70088085	rs3050191	AGT	A	4945.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:117,128:0.52:245
chr12	70091432	rs775429	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	70219408	rs10506571	C	G	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	70248997	rs11177906	T	C	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	70273303	rs1240286	C	G	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	70274066	rs17813773	A	G	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr12	70274101	rs7310544	G	A	4476.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	70274160	rs1240287	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	70280797	rs1612447	T	C	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	70289063	rs7964113	A	T	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	70289112	rs7979309	T	C	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	70289124	rs139690592	G	GT,GTT	2488.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.976;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.30;MQRankSum=0.861;QD=14.22;ReadPosRankSum=-0.277;SOR=0.459;set=HC	GT:AD:AF:DP	1/2:30,115,30:0.66,0.17:175
chr12	70290875	rs10879038	T	A	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	70290921	rs10879039	C	T	8688.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr12	70291047	rs10879040	T	G	7297.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	70297317	rs10784805	A	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	70304860	rs989879	C	A	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	70326498	rs77083992	A	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr12	70329581	rs61928031	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr12	70330087	rs813147	A	G	10686.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr12	70330472	rs61929670	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr12	70346048	rs76314993	A	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr12	70351684	rs10879065	C	A	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:131,101:0.44:232
chr12	70352021	rs2307087	C	T	4716.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:276,243:0.47:519
chr12	70352111	rs74787767	T	G	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:135,160:0.54:295
chr12	70672149	rs11611635	T	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	70724053	rs11615947	G	A	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:90,87:0.49:177
chr12	70740194	rs3817487	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=0.185;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr12	70794186	rs710651	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr12	70915347	rs369876	A	G	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	70925864	rs17226367	C	G	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:142,139:0.49:281
chr12	70928724	rs582954	A	G	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr12	70930061	rs2278346	T	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	70933687	rs919595	A	G	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr12	70938176	rs4761221	G	A	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	70938279	rs10531402	AGAG	A	12280.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr12	70949620	rs2278341	G	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	70949973	rs11424259	A	AT	461.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr12	70953277	rs2303963	T	C	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:264,215:0.45:479
chr12	70953456	rs2303962	T	C	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=1.436;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:91,63:0.41:154
chr12	70953477	rs34465365	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:64,49:0.43:113
chr12	70954814	rs12580379	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr12	70956935	rs11178291	G	A	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr12	70990054	rs2465811	T	C	1555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-2.725;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:80,82:0.51:162
chr12	70990120	rs143830848	T	TAC	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.678;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.351;QD=2.82;ReadPosRankSum=0.968;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr12	70990134	.	C	CA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.570;QD=2.06;ReadPosRankSum=-2.951;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr12	71002865	rs2717430	T	A	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:237,115:0.33:352
chr12	71002893	rs2252784	C	T	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:228,113:0.33:341
chr12	71003360	rs2717431	T	C	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:89,65:0.42:154
chr12	71003515	rs2252674	C	T	11121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.920;QD=16.40;ReadPosRankSum=3.844;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:373,305:0.45:678
chr12	71003524	rs3217500	CTT	C	11126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.895;QD=17.33;ReadPosRankSum=2.522;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:349,293:0.46:642
chr12	71029365	.	A	AAAAC	542.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	71029431	rs2717417	C	T	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:86,80:0.48:166
chr12	71078135	rs7958846	G	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr12	71139664	rs3803036	T	C	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	71509607	rs71931636	ACTCT	A	1649.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr12	71509652	rs34349223	T	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:92,77:0.46:169
chr12	71509793	rs36021752	A	C	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr12	71509814	rs141855745	G	GTTCCCTGTATAATTTT	960.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr12	71509836	rs1796329	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr12	71511971	rs11178616	G	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr12	71519096	rs1051344	G	C	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:212,157:0.43:369
chr12	71522953	rs1796330	G	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	71523043	rs1705263	C	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-0.075;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr12	71523134	rs1051334	A	C	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=0.268;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:82,41:0.33:123
chr12	71523199	rs143821581	TAA	T	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=0.936;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr12	71526414	rs2270588	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr12	71526677	rs1397566	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr12	71526709	rs3816942	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	71531663	rs2270585	A	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.40;ReadPosRankSum=1.579;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	71531889	rs1798093	T	C	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:126,115:0.48:241
chr12	71532099	rs2270584	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr12	71532922	rs2971392	A	C	5773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=925;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.962;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:581,329:0.36:910
chr12	71533534	rs3763978	C	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:137,72:0.34:209
chr12	71947173	rs1148985	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr12	71955394	rs1280603	T	C	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	71960208	rs1797372	G	A	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	71960329	rs1797373	G	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	71960533	rs1797374	G	A	14112.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr12	71960584	rs1726469	T	C	17649.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr12	71966836	rs11178860	G	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr12	71972513	rs147611388	GT	G	739.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr12	71977787	rs17109924	T	C	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:111,105:0.49:216
chr12	72004884	rs34631263	G	GA	650.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-1.471;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:55,54:0.50:109
chr12	72008421	rs11541286	T	C	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:76,81:0.52:157
chr12	72013832	rs1298463	A	G	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	72017799	rs17110038	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	72019989	rs55719302	T	TAC	4266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.916;QD=20.71;ReadPosRankSum=0.199;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:44,162:0.79:206
chr12	72022556	rs1148996	C	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	72023336	rs56109220	T	TACACACAC,TACAC	514.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=14;set=Intersection	GT:AF:DP	0/1:0.89:9
chr12	72026872	rs1011331	T	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	72028607	rs34399921	TA	T	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.001;QD=4.65;ReadPosRankSum=-0.376;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:33,27:0.45:60
chr12	72030252	rs1149006	T	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr12	72058592	rs151136858	G	GT	1289.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:104,72:0.41:176
chr12	72058798	rs17110130	T	C	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-0.669;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:39,31:0.44:70
chr12	72070505	rs140783391	AGTT	A	2448.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr12	72090112	.	CA	C	230.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	72091025	rs3741690	T	G	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=2.021;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:39,38:0.49:77
chr12	72091396	rs77325192	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-1.735;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr12	72094530	rs367801163	TA	T	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-0.384;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr12	72148920	.	CCGG	C	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.904;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:146,18:0.11:164
chr12	72343287	rs11179003	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr12	72372601	rs4760816	C	T	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr12	72372862	rs7305115	A	G	7771.77	.	AC=1;AF=0.500;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	0/1:507,415:0.45:922
chr12	72388374	rs1007023	G	T	4954.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	72416235	rs4290270	A	T	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:223,157:0.41:380
chr12	72666480	rs201267265	AAAG	A	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.277;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:58,6:0.09:64
chr12	72666485	rs74594364	A	G	1912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.42;ReadPosRankSum=0.537;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,52:0.88:59
chr12	72666488	rs78720771	G	A	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.19;ReadPosRankSum=1.304;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:6,55:0.90:61
chr12	72666499	rs79761722	A	G	1894.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=2.425;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:11,92:0.89:103
chr12	72666618	rs11179139	A	C	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:158,105:0.40:263
chr12	72893531	rs1444607	T	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	72962547	rs11179252	G	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	73012599	rs112881013	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	73012649	rs111312234	CT	C	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=2.005;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr12	73014917	rs7139238	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,54:0.50:109
chr12	73015115	rs74105937	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr12	73015662	rs2217678	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr12	74932159	rs590352	G	C	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	75435986	.	A	AT	462	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=13;HapScore=2;MGOF=3;MMLQ=26;MQ=60.0;NF=5;NR=13;PP=462;QD=26.0;SC=AACCCTGGGTATTTTTTTTTT;SbPval=0.89;Source=Platypus;TC=72;TCF=30;TCR=42;TR=18;WE=75436007;WS=75435976;set=Platypus	GT:AD:AF:DP	0/1:54,18:0.25:72
chr12	75435998	.	TA	T	554	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=11;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=5;NR=13;PP=554;QD=31.1111111111;SC=TTTTTTTTTTTAAAGAGTCTA;SbPval=0.83;Source=Platypus;TC=72;TCF=27;TCR=45;TR=18;WE=75436007;WS=75435976;set=Platypus	GT:AD:AF:DP	0/1:54,18:0.25:72
chr12	75435999	rs7969026	A	T	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.764;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:122,64:0.34:186
chr12	75687185	rs7967562	G	A	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr12	75692607	rs7485576	G	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr12	75706720	rs60971359	T	C	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.916;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:58,61:0.51:119
chr12	75710004	rs10879900	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr12	75715330	rs10879901	C	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr12	75760742	rs12366348	G	A	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:110,114:0.51:224
chr12	75784773	rs7978856	C	T	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.357;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr12	75785100	rs11180483	C	T	5363.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:282,276:0.49:558
chr12	75785468	rs4393363	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr12	75796721	rs7135440	G	T	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr12	75804539	.	A	G	151.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	75816612	rs1543946	C	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.870;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr12	75816814	rs144850646	G	GACA	1105.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr12	75874913	rs2242435	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr12	75875576	rs1909979	C	T	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:135,141:0.51:276
chr12	75892719	rs143283114	G	A	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr12	75900396	.	CAA	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.113;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr12	75900702	rs2704766	G	A	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:98,145:0.60:243
chr12	75901961	rs371285294	TA	T	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.146;QD=3.79;ReadPosRankSum=-0.394;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr12	76357686	rs17115989	A	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.82;ReadPosRankSum=1.180;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	76358019	.	A	T	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.640;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:57,51:0.47:108
chr12	76424937	rs71716769	TTGC	T	7844.73	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:11,303:0.96:314
chr12	76442907	rs11180815	T	C	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	76444510	rs4831914	G	A	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	76447792	rs35076461	AT	A	430.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	76449900	rs1059143	T	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	76450465	rs113043714	TA	T	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.618;QD=1.52;ReadPosRankSum=2.043;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:142,62:0.30:204
chr12	76451696	rs2163913	T	C	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	76453966	rs4663	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	76461137	rs10785227	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	76461145	rs7972289	C	T	176.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	76462612	rs10880034	T	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	76762923	rs10656017	A	AAAT	362.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	76763092	rs11459293	G	GA	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=1.076;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:12,30:0.71:42
chr12	76767065	rs71311107	A	AT	836.19	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:8,46:0.85:54
chr12	76769209	rs7299563	G	A	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	76780051	rs72247585	T	TA	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr12	76786349	rs4761423	G	A	8193.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr12	77158419	rs1017784	T	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	77199250	rs140164197	AACTTG	A	840.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr12	77202798	rs10778920	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	77209613	.	G	GT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-1.212;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr12	77214681	rs1477748	G	A	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	77214788	rs2306142	G	A	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	77216281	rs17813975	G	A	1984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.715;QD=5.51;ReadPosRankSum=-1.240;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:237,123:0.34:360
chr12	77216330	.	ATT	A	662.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.754;QD=10.19;ReadPosRankSum=0.682;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:25,40:0.62:65
chr12	77236968	rs1979743	G	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	77239420	rs143729859	AAAAT	A	2258.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	77254207	rs35557984	GA	G	6798.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.117;QD=20.60;ReadPosRankSum=1.119;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:2,328:0.99:330
chr12	77256477	rs2047226	T	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	77256681	rs2047227	T	G	10353.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.105;QD=25.38;ReadPosRankSum=-0.614;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:2,406:1.00:408
chr12	77421778	rs35158210	A	C	3742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-0.320;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:156,183:0.54:339
chr12	77424135	rs10862960	C	T	3376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.520;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:159,172:0.52:331
chr12	77426776	rs753266	G	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=1.107;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr12	77427000	rs202239302	CT	C	534.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr12	77438436	rs2242384	T	C	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:168,148:0.47:316
chr12	77438607	rs2242383	T	C	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:51,67:0.57:118
chr12	77449790	rs310791	A	G	6407.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:3,262:0.99:265
chr12	78225110	rs12227066	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	78225374	rs10735309	A	G	8725.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr12	78334053	rs1731740	G	C	9890.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr12	78400884	rs34276383	G	A	2759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-0.064;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:192,142:0.43:334
chr12	78510374	rs2694680	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	78511755	rs300442	T	C	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	78513833	rs55670442	T	TATATA	193.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr12	78530979	rs1852464	G	A	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	78531156	rs2290103	A	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	78531207	rs300462	T	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	78534233	rs1726427	A	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	78537016	rs451753	A	T	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	78537138	rs10661027	C	CGGT	7267.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	78538648	rs411935	T	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	78538711	.	A	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.368;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr12	78538713	.	A	G	102.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.592;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr12	78538714	.	AAAAAAAAAAAAAAG	A	88.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.413;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr12	78538716	.	AAAAAAAAAAAAG	A	102.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.090;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr12	78540174	rs34144410	TA	T	467.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr12	78542594	rs444864	T	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	78542602	rs3214877	A	AT	3730.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	78542699	rs366527	T	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	78562687	rs1726431	A	G	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	78569059	rs2442134	G	A	3141.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.55;ReadPosRankSum=2.736;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:2,126:0.98:128
chr12	78570914	rs1020462	G	C	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-0.387;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:146,90:0.38:236
chr12	78571186	rs1020461	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr12	78582184	rs61936253	C	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,63:0.48:130
chr12	78582362	rs300513	T	C	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	78582566	rs400289	A	G	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	78590946	rs300498	A	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	78590983	rs300497	A	G	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.333;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:14,40:0.74:54
chr12	78591249	.	C	A	57	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=1;HapScore=2;MGOF=202;MMLQ=27;MQ=59.49;NF=0;NR=2;PP=57;QD=45.8856062736;SC=CTTCTTGTACCTGTATGCATT;SbPval=1.0;Source=Platypus;TC=10;TCF=1;TCR=9;TR=2;WE=78591257;WS=78591239;set=Platypus	GT:AD:AF:DP	1/0:8,2:0.20:10
chr12	78592992	rs11272983	ATGGGAACATTATTAC	A	1921.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:82,53:0.39:135
chr12	78598891	rs9971904	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:103,97:0.48:200
chr12	79611374	rs2037743	C	T	3609.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:270,198:0.42:468
chr12	79611536	rs2400390	T	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.931;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	79685913	rs2272500	C	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr12	79747487	rs1732664	T	C	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr12	80014907	rs2307223	A	T	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=-1.358;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:63,49:0.44:112
chr12	80169697	rs369362742	CT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.194;QD=0.53;ReadPosRankSum=1.029;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:146,46:0.24:192
chr12	80175764	rs2111687	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.55;ReadPosRankSum=-0.350;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	80190650	rs2694657	C	G	3496.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:236,192:0.45:428
chr12	80201271	rs34190005	TTA	T	107.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	80203831	rs2656041	G	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr12	80216060	rs3849223	C	A	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr12	80266523	rs2656037	C	T	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,66:0.49:135
chr12	80602001	rs1244908	T	C	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr12	80613570	rs71717494	C	CT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-1.230;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:177,42:0.19:219
chr12	80626970	rs1451105	T	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	80645734	rs11438265	A	AT	828.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,36:0.97:37
chr12	80645799	rs2100258	A	T	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.36;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	80647155	rs10862083	A	G	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	80648148	rs144548100	ATTTAT	A	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	80648399	rs7295623	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	80650276	rs147846753	T	TCAAA,TCAAACAAA	841.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	1/2:0.67,0.33:21
chr12	80655692	rs10778721	G	A	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	80660499	rs7313132	T	C	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	80661189	rs11114377	T	A	785.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.19;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	80663825	rs11324174	GA	G	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.201;QD=7.67;ReadPosRankSum=1.129;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:22,42:0.66:64
chr12	80665397	rs4483657	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	80672064	rs1376384	A	G	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	80707153	rs1037335	C	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	80712307	rs7963215	A	C	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	80712420	rs10778725	G	A	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	80722385	rs71094975	C	CT	386.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.33;ReadPosRankSum=0.688;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr12	80722563	rs117040479	T	A	2907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=4.190;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:148,148:0.50:296
chr12	80729948	.	CT	C	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-1.254;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:57,37:0.39:94
chr12	80730664	rs10862093	G	A	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	80733078	.	G	GTTTT	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.655;QD=12.82;ReadPosRankSum=0.043;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr12	80735771	rs10778727	T	C	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	80746116	rs183555119	T	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.215;QD=6.97;ReadPosRankSum=-0.417;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:57,40:0.41:97
chr12	80746234	rs147703967	G	GAAT	3687.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	80747242	rs7297767	A	G	7419.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	80749392	rs6539501	A	T	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	80750741	rs5799468	G	GA	888.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.02;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	80752660	rs2034528	A	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	80760291	.	T	TTATATATATATA	357.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;QD=39.75;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	80760470	rs34113015	GT	G	759.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	80761430	rs1551118	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	80761465	rs2717482	G	A	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	80762163	rs57527553	T	TC,TCC	12334.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.48;QD=32.98;SOR=1.426;set=HC	GT:AD:AF:DP	1/2:0,53,321:0.14,0.86:374
chr12	80762178	rs368205913	A	G	3625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=9.880;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.255;QD=9.69;ReadPosRankSum=-3.093;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:179,195:0.52:374
chr12	80762246	rs10778730	G	A	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	80765683	rs5799469	TGAA	TAA,T	53.70	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=2;set=Intersection	GT:AF:DP	1/1:1.00:2
chr12	80765685	rs201680829	AAG	A	53.70	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	80765687	.	G	A	23	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=0.9999;HP=2;HapScore=4;MGOF=7;MMLQ=26;MQ=60.0;NF=2;NR=0;PP=23;QD=28.8856062736;SC=TTTCTATGAAGGCTTTGTGGT;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=80765695;WS=80765673;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	80765741	rs1037336	C	T	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	80765800	rs1551122	A	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	80765933	rs10862100	C	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.55;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	80765945	rs10778734	G	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	80771813	rs2717477	G	A	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr12	80816492	rs4482093	C	T	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr12	80818876	rs10746164	A	G	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	80818964	rs10746165	G	T	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	80821391	rs61127339	C	CT	1881.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:6,90:0.94:96
chr12	80821446	rs7294514	T	C	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	80828629	rs4128302	T	C	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	80828679	rs4128303	C	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	80838012	rs10746166	T	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	80849328	rs4482094	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	80855597	rs4499068	T	C	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	80855803	rs7137294	G	A	8068.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr12	80862722	rs11614073	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=6.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=-1.606;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr12	80878174	rs7311413	T	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	80878181	rs56351124	C	CT	2152.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	80889165	rs145970310	T	TTTG	1834.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:2,44:0.96:46
chr12	80889829	rs10778752	T	A	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	80890325	rs56929349	T	TG	6170.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	80899901	rs11114486	C	A	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	80900397	rs12824064	C	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	80933465	rs2222752	G	A	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	80935300	rs11114502	A	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	81009858	.	TTA	T	76	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=76;QD=42.5;SC=ATAATCAGTTTTATATATATA;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=2;WE=81009867;WS=81009848;set=Platypus	GT:AD:AF:DP	1/0:1,2:0.67:3
chr12	81009921	rs73150758	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.93;ReadPosRankSum=1.584;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	81063264	rs1163041	C	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr12	81066851	rs950124	A	G	133.10	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	81110765	rs1163261	A	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr12	81112882	rs11114581	A	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr12	81205198	.	G	GTA	77.73	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:36,7:0.16:43
chr12	81226432	rs12297928	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.90;ReadPosRankSum=0.718;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr12	81226436	rs12311734	C	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.07;ReadPosRankSum=1.501;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr12	81329536	rs2682818	A	C	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:169,190:0.53:359
chr12	81552338	rs11835646	C	T	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:208,193:0.48:401
chr12	81624964	rs2293651	A	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	81647065	rs2895868	G	A	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:173,117:0.40:290
chr12	81647471	rs2400895	T	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	81653561	rs117730329	A	G	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr12	81655692	.	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.928;QD=0.54;ReadPosRankSum=-0.483;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:136,32:0.19:168
chr12	81655861	rs2272501	G	C	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	81660963	rs35647579	C	CA	678.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;QD=22.62;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	81661039	rs12826016	G	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr12	81661911	.	CTTTTTTTTTT	C	1822.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.336;QD=15.71;ReadPosRankSum=0.838;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:57,59:0.51:116
chr12	81661945	rs6539566	A	T	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	81671207	.	T	TA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=7.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.383;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr12	81688958	rs1882188	C	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	81696399	rs1921053	G	A	6592.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	81696487	rs1921052	G	A	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr12	81746835	rs2060206	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr12	81751813	rs11835074	C	T	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr12	81762478	rs10506275	G	C	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:78,79:0.50:157
chr12	81769581	rs10862301	C	T	3368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=-1.432;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:196,177:0.47:373
chr12	81833745	rs2272083	G	T	4459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=-0.918;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:215,230:0.52:445
chr12	82617279	rs7304928	G	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	82751955	rs6539662	A	G	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	82752080	rs61737397	C	T	9113.77	.	AC=1;AF=0.500;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	0/1:501,464:0.48:965
chr12	82752633	rs4882530	G	A	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	82783668	rs10778908	C	T	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	82792787	rs4296098	C	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	82792949	rs34765930	G	A	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=2.260;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:80,70:0.47:150
chr12	82828426	rs10683876	T	TATAAG	4582.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	82832418	rs2717448	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	82850427	rs2731290	A	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	83324499	rs10746259	G	T	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	83358930	rs2403023	A	G	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	83424455	rs11115554	A	T	650.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=1.291;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:3,33:0.92:36
chr12	83525962	rs7970515	T	C	2179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=1.103;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:169,120:0.42:289
chr12	85261005	rs79714331	T	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-1.584;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:41,45:0.52:86
chr12	85277561	rs17183577	T	A	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:109,79:0.42:188
chr12	85277608	rs17183612	C	T	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:167,150:0.47:317
chr12	85440932	rs144982007	AAAAAAAATT	A	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.27;ReadPosRankSum=0.428;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	85449465	rs7974418	T	A	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-0.329;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:54,42:0.44:96
chr12	85451017	rs6539881	G	C	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr12	85531790	rs168615	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	85547749	rs60165614	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr12	85556602	rs7971976	T	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:72,65:0.47:137
chr12	86268179	rs1800832	A	G	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:102,105:0.51:207
chr12	86270500	rs55644633	A	G	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=-0.513;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr12	86373221	rs17855890	G	C	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.996;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:87,85:0.49:172
chr12	86422111	rs74940493	C	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr12	88177722	rs1796320	G	A	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	88177791	rs1675574	C	T	10134.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.66;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr12	88177922	.	G	A	2900.77	.	AC=1;AF=0.500;AN=2;DP=307;set=Intersection	GT:AD:AF:DP	0/1:148,143:0.49:291
chr12	88178271	rs112316052	TGCC	T	15604.73	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr12	88379566	rs10858676	A	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	88422926	.	G	GT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.637;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.115;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr12	88440676	rs9262	G	C	8190.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr12	88447355	.	CAA	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.779;SOR=0.182;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr12	88453608	rs2471512	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	88454594	rs11405846	T	TA	756.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	88470954	rs45477793	C	G	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr12	88473049	rs2468245	C	T	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr12	88478316	rs11356711	TA	T	270.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	88480132	rs200189677	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr12	88483272	rs10717563	TA	T	4904.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=21.70;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	88496838	rs2471532	C	G	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	88505078	rs2468255	T	C	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	88505633	rs45465996	A	G	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:103,94:0.48:197
chr12	88522823	rs71082425	A	AC	4064.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	88522936	rs79458642	C	CTTA	743.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	88525048	rs59949315	AT	A	215.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	88546982	rs2468229	A	G	210.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	88547277	rs2468230	T	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	89743223	rs704075	G	A	9774.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr12	89853408	rs4842658	G	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.37;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	89853694	rs7953615	G	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	89861265	rs9308287	C	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	89861529	rs10506972	T	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	89864432	rs10777167	T	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	89885923	rs6538189	C	A	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	89885942	rs6538190	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	89917518	rs2230281	A	G	8075.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr12	89918677	rs11105310	C	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	89919630	rs67346689	ACC	A	697.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	90015579	rs35089871	C	CA	984.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=0.812;SOR=0.418;set=HC	GT:AD:AF:DP	1/1:6,54:0.90:60
chr12	90024549	.	A	AATATATAAATAT	142	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	91334194	rs4520662	T	C	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	91372042	rs66600255	GA	G	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.625;QD=8.11;ReadPosRankSum=0.951;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr12	91445303	rs2701166	G	A	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	91449852	rs35693771	A	G	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:83,74:0.47:157
chr12	91449990	rs2735333	C	T	13356.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr12	92539344	rs709223	T	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	92539378	rs1049979	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr12	92816525	rs73222027	G	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.11;ReadPosRankSum=0.180;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	92818482	rs12580153	C	T	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:110,111:0.50:221
chr12	92818786	rs1515565	A	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr12	92821674	rs61935211	A	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr12	92821860	rs11284604	CT	C	3661.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:142,114:0.45:256
chr12	93131203	rs2036553	A	C	11843.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr12	93147907	rs9669519	A	T	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	93150102	rs924326	T	C	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr12	93155399	rs372330753	GAAGAAAGAAAGA	G	171.50	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.332;MLEAC=2;MLEAF=1.000;MQ=62.28;MQRankSum=0.921;QD=21.44;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,6:0.75:8
chr12	93155535	rs1504907	G	A	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=24.45;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	93196422	rs10745623	T	G	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	93202801	rs7970286	C	T	6767.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	93206878	rs3925797	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	93229176	.	CTTTT	C	203.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=-0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.32;ReadPosRankSum=0.674;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr12	93236402	rs7300619	C	T	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.24;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	93236419	rs7316894	T	G	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.62;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	93244873	rs150723432	A	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr12	93247775	rs3065021	G	GATA	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	93258498	rs11106721	A	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	93289284	rs78542460	GAA	G,GA	808.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.551;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.404;QD=12.84;ReadPosRankSum=-1.554;SOR=0.672;set=HC	GT:AD:AF:DP	1/2:7,16,40:0.25,0.63:63
chr12	93397725	rs17020888	T	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr12	93609340	rs7305552	A	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	93721801	rs7976742	A	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,38:0.45:85
chr12	93721949	rs11380531	A	AC	708.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;MQ=60.43;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	93771138	rs113310131	C	CA	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-0.606;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:151,35:0.19:186
chr12	93835790	rs201709668	CT	C	4926.73	.	AC=1;AF=0.500;AN=2;DB;DP=266;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:109,147:0.57:256
chr12	93863162	rs4761721	C	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr12	93864474	rs1552861	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.031;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	93873019	rs112351142	G	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.542;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr12	93873089	rs34328828	C	CA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=2.005;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr12	93894823	rs6538425	G	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=-1.383;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	93898249	rs7971966	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr12	94132186	rs6538450	T	A	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-0.591;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:122,97:0.44:219
chr12	94243853	rs56944668	C	T	9235.77	.	AC=1;AF=0.500;AN=2;DB;DP=835;set=Intersection	GT:AD:AF:DP	0/1:366,458:0.56:824
chr12	94543506	rs2230754	C	T	11308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=1365;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.422;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:753,605:0.45:1358
chr12	94562802	rs2361358	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=1.406;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr12	94562875	rs2361359	C	G	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:68,91:0.57:159
chr12	94563134	rs3214968	A	AT	765.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.766;QD=12.15;ReadPosRankSum=-0.130;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:22,41:0.65:63
chr12	94575157	rs3794220	C	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=1.164;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr12	94603249	rs2610671	G	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	94603300	rs2305971	C	T	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=0.673;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:59,50:0.46:109
chr12	94620432	rs75674989	G	T	4534.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:206,229:0.53:435
chr12	94620766	rs63402960	TC	T	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=0.663;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr12	94620851	rs116700243	C	A	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr12	94631496	rs2230755	C	T	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=-1.080;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:148,109:0.42:257
chr12	94637557	rs864106	C	T	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	94645255	rs2230757	A	G	8577.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr12	94648103	rs11107483	C	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr12	94648493	rs7980141	A	G	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	94648945	rs2291326	T	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr12	94649103	rs865569	T	C	9593.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr12	94653227	rs2306664	T	C	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:54,45:0.45:99
chr12	94671565	rs832507	A	G	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	94671592	rs1880936	C	T	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:158,131:0.45:289
chr12	94671743	rs832506	G	C	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr12	94671910	rs1880935	G	A	3854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.730;QD=7.71;ReadPosRankSum=0.454;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:287,213:0.43:500
chr12	94671922	rs11341959	CA	C	10894.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;MQRankSum=-0.071;QD=21.53;ReadPosRankSum=-0.138;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:2,504:1.00:506
chr12	94672002	rs4761601	G	A	1697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.845;QD=7.79;ReadPosRankSum=-0.345;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:126,92:0.42:218
chr12	94673277	rs2230760	G	A	3424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.06;ReadPosRankSum=-1.892;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:243,182:0.43:425
chr12	94673509	rs10713724	GC	G	16244.73	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr12	94688232	rs1880934	C	A	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=0.200;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr12	94697525	rs1057977	T	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.730;QD=4.96;ReadPosRankSum=0.946;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr12	94698880	rs3803071	C	T	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	94729577	rs4761605	C	T	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=1.474;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:43,28:0.39:71
chr12	94761701	rs12426243	T	C	3086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-0.176;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:279,173:0.38:452
chr12	94769758	rs4761611	A	G	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:74,72:0.49:146
chr12	94972290	rs2270893	C	T	6095.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr12	94975799	rs3747553	G	A	10373.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr12	94976084	rs3747552	T	C	11755.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr12	94976159	rs3747551	T	C	3742.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:178,184:0.51:362
chr12	94976383	rs3747550	T	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	95044161	rs1274523	A	C	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	95044268	rs1274524	T	C	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.957;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:116,122:0.51:238
chr12	95228007	rs2289031	T	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	95322133	rs2033092	C	T	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr12	95390810	rs7973115	G	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr12	95396669	rs6538588	A	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=-1.603;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr12	95397552	rs835044	T	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	95422108	rs35583	A	G	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr12	95425033	rs141022772	ATAAT	A	790.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr12	95434116	rs249141	T	A	149.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.66;ReadPosRankSum=-0.674;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr12	95443034	rs249145	G	C	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:113,97:0.46:210
chr12	95475461	.	A	ATT	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=1.596;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:39,27:0.41:66
chr12	95488339	rs55905327	GA	G	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=3.257;QD=0.63;ReadPosRankSum=0.213;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:163,47:0.22:210
chr12	95498761	.	AAAAG	A	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.818;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:144,57:0.28:201
chr12	95500700	rs10694512	A	AAACAAAACAAAAC	5351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.500;MQ=62.28;MQRankSum=13.005;QD=14.95;ReadPosRankSum=-0.257;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:230,128:0.36:358
chr12	95500727	rs7138545	C	G	6680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=61.85;MQRankSum=12.234;QD=12.63;ReadPosRankSum=-0.184;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:308,221:0.42:529
chr12	95510811	rs6419371	T	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr12	95531442	rs11829776	T	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr12	95602672	rs2306884	C	T	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:95,101:0.52:196
chr12	95611185	rs6538618	T	C	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr12	95611824	rs74792623	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr12	95617758	rs10507048	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	95617829	rs10777677	A	G	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:81,76:0.48:157
chr12	95637174	rs141078164	C	CTCAGCT	7800.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=0.795;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:281,193:0.41:474
chr12	95639261	rs7979908	G	A	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	95650846	rs3751271	T	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr12	95651888	rs6538624	T	C	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	95668437	rs3816838	G	T	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr12	95676053	rs3215007	T	TG	879.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr12	95681554	rs12424550	C	T	2975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.393;QD=9.85;ReadPosRankSum=-0.956;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:149,153:0.51:302
chr12	95694394	rs14121	G	A	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	95771236	rs2727663	T	C	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	95878751	rs301036	T	G	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	95889923	rs17024311	A	G	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.455;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:67,59:0.47:126
chr12	95897997	rs2769469	T	C	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	95906603	rs3794261	C	A	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.423;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:52,46:0.47:98
chr12	95927762	rs3812813	T	C	3718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.708;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:307,209:0.41:516
chr12	96063947	rs3833792	TGTTA	T	409.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr12	96077312	rs17851048	C	T	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:98,141:0.59:239
chr12	96077328	rs370900900	C	T	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:174,125:0.42:299
chr12	96184102	rs11108265	G	A	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:70,76:0.52:146
chr12	96217159	rs10777742	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	96253003	rs66876037	A	AG	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	96254880	rs17024787	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	96260947	rs7960706	A	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	96263437	rs10735335	G	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	96263437	.	GAC	AAA	898	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=26;MQ=60.0;NF=4;NR=17;PP=898;QD=45.3079940411;SC=TGAGCCATGTGACTAGAAGAC;SbPval=0.57;Source=Platypus;TC=21;TCF=4;TCR=17;TR=21;WE=96263447;WS=96263427;set=Platypus	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	96263439	rs10735336	C	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	96266035	rs2117914	T	C	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:199,167:0.46:366
chr12	96284650	rs6538681	A	G	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	96330311	rs56667838	GA	G	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.86;ReadPosRankSum=0.309;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	96337183	rs7955450	A	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	96348536	rs11108351	C	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr12	96354455	rs2043608	G	C	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	96355949	rs3751266	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	96356048	rs112878109	A	AAC	3847.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	96356060	rs3751265	G	A	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	96356280	rs5800239	A	AC	9254.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	96359301	rs4762657	T	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	96359426	rs4762658	C	G	10868.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,427:1.00:427
chr12	96360350	rs1025606	A	T	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	96361514	rs56676973	G	GT,GTT	879.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-2.084;SOR=0.737;set=HC	GT:AD:AF:DP	1/2:4,32,17:0.60,0.32:53
chr12	96367900	rs2230885	G	T	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr12	96371670	rs3764038	G	A	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:45,61:0.58:106
chr12	96371894	rs4762659	C	T	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	96372026	rs11454735	A	AT	145.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	96374554	rs6538693	G	A	12505.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	96374563	rs6538694	T	C	12532.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	96374614	rs7297245	C	T	6592.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	96374672	rs6538695	T	C	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	96374683	rs6538696	C	T	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	96374750	rs2270318	G	A	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	96380975	rs11108364	A	G	2962.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:173,155:0.47:328
chr12	96381788	rs4762262	C	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	96384031	rs10745747	C	T	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,64:0.52:122
chr12	96386646	rs111580568	G	GCCCTCCCT	1412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=6.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=-1.493;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:73,40:0.35:113
chr12	96387621	rs2302629	A	G	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr12	96617304	rs2302902	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr12	96653501	rs4762144	C	T	5531.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	96660711	rs7974921	A	G	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr12	96677225	rs66560167	GTT	G	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.60;ReadPosRankSum=-1.254;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	96691355	rs5800246	T	TA	360.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr12	96694162	rs10777781	G	T	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	96704958	.	T	TA	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.154;QD=2.38;ReadPosRankSum=-0.830;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr12	96728707	rs61939060	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr12	96883245	rs3825265	G	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	96894453	rs7959697	A	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	96912598	rs11108564	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	96927498	rs2160500	T	C	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	96927778	rs5800251	GT	G	1263.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:6,70:0.92:76
chr12	96927817	rs2111146	C	T	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	96927972	rs2160501	A	G	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	96927986	rs2160502	A	T	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.91;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	96929200	rs11453356	A	AT	544.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr12	96974472	rs17025569	G	A	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:66,102:0.61:168
chr12	96986190	rs2052293	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr12	96986229	rs7311111	C	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,36:0.44:82
chr12	96988037	rs815896	C	G	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	96992494	rs815890	C	T	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=1.072;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:33,37:0.53:70
chr12	97020673	rs10507074	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr12	97023937	rs9919717	A	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr12	97023991	rs1362949	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr12	97024016	rs35205059	TG	T	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	97037840	rs11108609	A	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	97038904	rs144695006	C	A	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:183,105:0.36:288
chr12	97043961	rs11108616	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	97045481	rs74447642	C	T	2947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.073;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:143,149:0.51:292
chr12	97051632	rs10710617	AT	A	106.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.25;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	97051927	.	G	GA	847.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.895;QD=7.92;ReadPosRankSum=0.464;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:47,60:0.56:107
chr12	97079041	rs7974435	C	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=1.359;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr12	97079043	rs7974634	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=1.669;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	97085107	rs4762319	A	C	1901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=1.738;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:90,91:0.50:181
chr12	97098415	rs10860069	C	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	97098549	rs11108643	T	C	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.490;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr12	97102578	rs7968231	G	A	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.522;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:69,59:0.46:128
chr12	97102700	rs10581594	TTATA	T	823.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr12	97136239	rs1990828	G	A	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=-0.276;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chr12	97254620	rs1420653	G	A	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:88,104:0.54:192
chr12	97311541	rs4762339	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr12	97328714	rs1610921	TGCTTATAA	T	1152.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr12	97331219	rs67367047	GT	G	594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=1.640;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:41,39:0.49:80
chr12	97337199	rs249579	G	A	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	97338696	rs249585	G	A	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr12	97339388	rs249589	G	C	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr12	97345955	rs2304697	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.113;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr12	97639049	rs1012314	T	C	7985.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr12	97639144	rs1012315	A	G	12157.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,475:1.00:475
chr12	98332667	rs1349300	C	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=-1.732;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,34:0.74:46
chr12	98332704	rs1349299	C	G	1672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=1.916;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:42,79:0.65:121
chr12	98332904	rs3072891	TCA	T	964.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr12	98389341	rs1477006	A	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr12	98880901	rs36109874	TA	T	546.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=1.117;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:8,42:0.84:50
chr12	98881064	rs34027469	TA	T	183.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.281;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr12	98896502	rs3825263	G	A	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	98897361	rs56397627	C	G	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.07;SOR=2.746;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	98897364	rs56118269	C	T	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.11;SOR=2.507;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	98938907	.	G	GT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.174;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-1.219;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr12	98985056	rs934930	T	C	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	98992547	rs35657737	G	GT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.622;QD=1.80;ReadPosRankSum=0.506;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr12	99020688	rs148210292	TGACA	T	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	99056125	rs10745833	T	A	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	99116919	rs11109582	A	G	5885.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	99129497	rs10860361	G	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	99129541	rs7300187	G	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	99166805	rs2287574	G	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr12	99175091	.	AAC	A	2876.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=11.51;ReadPosRankSum=4.296;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:121,129:0.52:250
chr12	99175840	rs7954506	A	G	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-1.420;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:74,62:0.46:136
chr12	99447139	rs3794799	C	A	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr12	99478626	rs3803094	C	T	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:108,100:0.48:208
chr12	99478889	rs7970088	G	A	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	99639930	rs923724	G	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-1.435;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:70,35:0.33:105
chr12	99640428	rs3751323	T	C	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.298;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:75,74:0.50:149
chr12	99640557	rs1552759	T	C	2394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-1.586;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:131,124:0.49:255
chr12	99837570	rs148678454	C	T	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr12	100041939	rs34319076	AT	A	6906.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	100041942	rs79915291	T	A	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	100042040	rs11109968	C	G	7588.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	100042163	rs11109969	A	G	12841.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr12	100219207	rs7138513	A	G	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	100452027	rs60592197	T	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr12	100464068	rs145821926	A	AT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.946;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr12	100478156	.	TCACACA	T	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-1.199;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr12	100496478	rs11317094	CT	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.002;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=12.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.590;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:22,27:0.55:49
chr12	100550905	.	T	TCCACCCTCCACCCCC	7078.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.819;ClippingRankSum=0.000;DP=1037;ExcessHet=3.0103;FS=9.108;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.001;QD=7.91;ReadPosRankSum=1.105;SOR=1.369;set=HC	GT:AD:AF:DP	0/1:742,153:0.17:895
chr12	100550996	rs12370675	G	A	7700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.906;QD=8.46;ReadPosRankSum=1.200;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:496,414:0.45:910
chr12	100552560	rs192532603	G	A	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:114,86:0.43:200
chr12	100594634	.	C	T	4410.77	.	AC=1;AF=0.500;AN=2;DP=454;set=Intersection	GT:AD:AF:DP	0/1:220,224:0.50:444
chr12	100604221	rs7970382	T	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr12	100635627	rs34267654	GA	G	781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-1.472;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:68,74:0.52:142
chr12	100635631	.	A	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.842;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.076;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:113,48:0.30:161
chr12	100646134	rs66721214	CA	C	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.127;QD=6.10;ReadPosRankSum=-1.021;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr12	100657464	rs7307415	T	C	5081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.377;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:292,260:0.47:552
chr12	100787406	.	G	A	84.77	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr12	100806715	rs11568535	G	T	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:65,77:0.54:142
chr12	100813487	rs7967828	A	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr12	100930180	.	C	CT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=1.248;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:158,28:0.15:186
chr12	100934590	rs149287629	A	C	2122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.848;QD=7.58;ReadPosRankSum=-0.691;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:164,116:0.41:280
chr12	101012490	rs7961640	G	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	101017445	rs1469385	T	C	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	101018014	rs1045602	T	C	4736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-1.739;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:254,237:0.48:491
chr12	101018161	rs1045603	C	T	5216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.561;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:318,269:0.46:587
chr12	101127795	rs17030480	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=0.253;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	101133912	rs4764751	G	A	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:78,84:0.52:162
chr12	101365007	rs10778090	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	101433990	rs665071	A	G	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	101473243	rs73156642	T	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr12	101473272	rs651784	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	101491375	rs1842888	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr12	101510371	rs349661	T	G	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	101603459	rs139521439	G	C	5172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-0.998;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:293,262:0.47:555
chr12	101674854	rs78468255	T	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=-0.729;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr12	101679428	rs78213936	C	T	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr12	101679476	rs113141081	G	A	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=0.160;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:64,49:0.43:113
chr12	101679772	rs75616365	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr12	101683929	rs703715	C	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-2.201;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr12	101685540	rs75817013	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr12	101685643	rs75620118	C	A	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:124,112:0.47:236
chr12	101687043	rs2290720	C	T	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=0.214;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr12	101693897	rs77465209	T	A	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr12	101701930	rs7975348	T	C	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	101702045	rs77005911	G	A	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:211,169:0.44:380
chr12	101705433	rs17031260	T	C,TC	1213.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	1/2:0.65,0.35:40
chr12	101713141	rs2290719	C	T	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	101715202	rs55721648	C	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.82;ReadPosRankSum=-1.068;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	101728166	rs2002895	A	G	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	101732150	rs77062861	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr12	101732655	rs56265469	C	T	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	101734277	rs7963896	T	C	4821.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	101734452	rs7977402	C	T	9503.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=0.663;SOR=0.364;set=HC	GT:AD:AF:DP	1/1:1,370:1.00:371
chr12	101736381	rs2270861	A	G	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	101746809	.	CT	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.590;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr12	101747023	rs77738954	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.75;ReadPosRankSum=-0.126;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	101750814	rs10082778	T	A	11480.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr12	101755683	rs7313312	T	C	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=-1.133;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:90,95:0.51:185
chr12	101757530	rs2305862	G	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr12	101759443	rs61183264	C	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	101761516	rs2305859	T	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	101761867	rs1457564	G	T	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	101779964	rs4764794	T	C	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	101789399	rs150388630	G	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr12	101790373	rs73159756	T	C	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr12	101799511	rs12230308	T	C	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr12	101870804	rs7979430	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-0.590;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr12	101871237	rs76202035	T	C	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:96,47:0.33:143
chr12	101873596	rs10683589	C	CT,CTT	1084.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.065;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.000;QD=9.86;ReadPosRankSum=3.576;SOR=0.479;set=HC	GT:AD:AF:DP	1/2:34,45,31:0.41,0.28:110
chr12	101880128	rs61748064	A	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:118,81:0.41:199
chr12	102036305	rs2293468	C	T	3186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=0.678;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:276,180:0.39:456
chr12	102041757	rs17031746	A	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:99,66:0.40:165
chr12	102041967	rs3834936	C	CA	293.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr12	102044912	rs825046	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr12	102045163	rs3817552	C	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:172,109:0.39:281
chr12	102046394	rs1997205	C	T	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-0.367;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:39,51:0.57:90
chr12	102046595	rs1997204	T	C	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	102056107	rs79367589	A	T	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-1.237;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:40,29:0.42:69
chr12	102057166	rs2254631	T	C	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.561;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:37,22:0.37:59
chr12	102060672	.	T	TAC	133.73	.	AC=1;AF=0.500;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=13.37;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr12	102061793	rs147564199	GTTAATGCT	G	41.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,2:0.50:4
chr12	102063714	.	AAAAG	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-2.220;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	102063901	.	C	CCACACA	974.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.447;QD=33.61;ReadPosRankSum=0.166;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:3,26:0.90:29
chr12	102064118	rs7139095	T	C	9553.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr12	102069045	rs374315496	G	A	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:150,119:0.44:269
chr12	102069264	rs1263786	G	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr12	102074442	rs2303631	A	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.329;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-0.704;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr12	102108345	rs3205421	T	C	4013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-1.790;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:218,211:0.49:429
chr12	102111173	rs1544921	G	C	2797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.313;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:155,147:0.49:302
chr12	102116792	rs3764973	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	102117589	rs11082	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=1.682;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr12	102120289	rs7965541	C	A	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.541;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:37,39:0.51:76
chr12	102120364	rs222508	A	G	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	102127262	rs10860779	C	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,45:0.50:90
chr12	102131090	rs11306325	TA	T	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.422;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.026;QD=6.28;ReadPosRankSum=-0.800;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr12	102150878	rs3736475	G	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr12	102151113	rs3736476	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr12	102154900	rs759935	A	G	1199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-0.432;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:78,67:0.46:145
chr12	102158763	rs10778148	T	C	3610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=3.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.135;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:193,185:0.49:378
chr12	102182181	rs2108694	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=-0.272;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr12	102182228	rs4015837	AAC	A	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=0.803;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr12	102224491	rs76300806	AGCC	A	1835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.902;QD=12.93;ReadPosRankSum=-0.968;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:88,54:0.38:142
chr12	102295218	rs7295569	T	C	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:135,91:0.40:226
chr12	102308190	rs6539020	G	A	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:105,81:0.44:186
chr12	102433811	rs4237982	T	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	102468734	.	TA	T	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=3.489;QD=0.27;ReadPosRankSum=2.105;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:109,27:0.20:136
chr12	102471023	rs77619182	G	A	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:125,124:0.50:249
chr12	102514184	rs4764863	A	G	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-0.518;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr12	102527154	rs138494250	G	GT	872.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr12	102576307	rs35297380	C	CT	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-0.509;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:55,49:0.47:104
chr12	102872155	rs67214112	C	CT	247.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=1.862;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr12	102872494	rs142718901	T	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr12	103234251	rs1801152	G	A	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:243,179:0.42:422
chr12	103234479	rs798709	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr12	103237468	rs772897	G	C	2499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.744;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:140,131:0.48:271
chr12	103237958	rs10860930	AA	CG	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	103248924	rs1126758	C	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:100,80:0.44:180
chr12	103298517	rs1522307	A	G	10822.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr12	103306550	rs17842947	A	G	4387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.525;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:272,230:0.46:502
chr12	103307583	rs3805122	A	G	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:116,157:0.58:273
chr12	103310715	rs1522295	T	C	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	103310787	rs1522296	G	A	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr12	103310979	rs2280615	T	G	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:44,66:0.60:110
chr12	103352145	.	A	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.993;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=5.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-1.279;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:62,28:0.31:90
chr12	103352171	rs71438488	C	CGCA	1074.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:71,35:0.33:106
chr12	103352649	rs731682	C	G	10459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.674;ClippingRankSum=0.000;DB;DP=1372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.410;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:811,556:0.41:1367
chr12	103561799	rs1401988	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr12	103872172	rs10778257	T	G	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	103988385	rs17034187	A	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr12	104014165	rs58714504	TTAG	T	460.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	104015999	rs703612	T	C	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	104025219	rs10668571	T	TAA	396.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	104042736	rs697199	T	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	104048592	rs831425	C	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	104053955	rs11111705	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.659;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr12	104054434	rs831427	C	T	3553.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:167,172:0.51:339
chr12	104064698	rs703639	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr12	104067812	rs11614418	C	T	10522.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr12	104069836	rs72387257	C	CTT	313.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=0.898;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr12	104071158	rs72177976	TTCTC	T	2842.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	104081793	rs697206	A	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	104086631	rs703651	C	T	9821.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr12	104089232	rs17034394	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr12	104092996	rs697210	T	C	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	104100617	rs697212	C	T	5278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=683;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.319;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:391,289:0.42:680
chr12	104100677	rs149369382	C	T	5358.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:224,272:0.55:496
chr12	104109497	rs10861078	T	C	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-1.379;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:28,33:0.54:61
chr12	104111687	rs703653	C	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	104118687	rs2270486	A	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-0.285;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr12	104119743	rs12300983	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr12	104123911	rs10778281	C	T	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-1.840;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr12	104124018	rs17034433	A	C	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr12	104124061	rs4981042	A	G	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	104131352	rs147914018	T	TTC	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=0.741;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr12	104131384	.	CTTT	C	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=7.84;ReadPosRankSum=1.891;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr12	104133305	.	CTGTGTGTG	C,CTGTGTGTGTG	330.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=2.754;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=-0.280;SOR=0.223;set=HC	GT:AD:AF:DP	1/2:5,7,9:0.33,0.43:21
chr12	104133355	rs4981029	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.829;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=13.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=1.996;SOR=0.011;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr12	104140517	rs2056128	A	G	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	104147207	rs3751198	A	G	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	104149022	rs11111748	G	A	16586.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr12	104149251	rs7296626	C	T	16417.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr12	104149520	rs7313163	T	G	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	104179529	rs201632707	TAAAAAAAAAAAAA	T,TA	3064.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.651;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.216;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.39;MQRankSum=0.320;QD=36.06;ReadPosRankSum=1.735;SOR=0.422;set=HC	GT:AD:AF:DP	1/2:2,27,56:0.32,0.66:85
chr12	104190523	rs12425205	G	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	104192506	rs10082821	A	G	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	104235207	rs35015549	G	A	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:109,130:0.54:239
chr12	104235229	rs34187551	C	G	12963.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.01;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr12	104235308	rs116314589	C	G	9431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=1083;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=2.543;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:575,499:0.46:1074
chr12	104237512	rs1370784	T	C	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	104237829	rs1370780	T	G	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	104237882	rs2576974	G	A	3087.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:141,150:0.52:291
chr12	104254753	rs11111816	G	A	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	104254932	rs11111817	G	A	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	104260208	rs11612613	C	T	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:112,123:0.52:235
chr12	104309428	rs7295489	G	C	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:168,164:0.49:332
chr12	104324062	.	GC	G	20	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=9;HapScore=2;MGOF=17;MMLQ=17;MQ=60.0;NF=2;NR=0;PP=20;QD=20.5;SC=GTGGACTTCCGCCCCCCCTCA;SbPval=1.0;Source=Platypus;TC=4;TCF=3;TCR=1;TR=2;WE=104324070;WS=104324059;set=Platypus	GT:AD:AF:DP	0/1:2,2:0.50:4
chr12	104324148	rs2722187	G	A	1574.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.221;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.945;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=0.839;SOR=0.940;set=HC	GT:AD:AF:DP	1/1:1,61:0.98:62
chr12	104324182	rs2070908	C	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	104324230	rs62747560	AGGGGTGG	A	5361.73	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:132,138:0.51:270
chr12	104325459	rs17034931	G	C	4183.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:192,209:0.52:401
chr12	104325649	rs2722188	T	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	104333474	rs77096967	G	T	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=0.515;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:51,47:0.48:98
chr12	104335750	rs58392270	TAA	T	8236.73	.	AC=2;AF=1.00;AN=2;DB;DP=201;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	104359931	rs4135039	T	A	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	104359982	rs4135040	C	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	104366864	rs10627502	A	ATTTTTTTT	2785.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;QD=33.16;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:2,82:0.98:84
chr12	104373600	rs3751209	G	A	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=24.44;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	104378762	rs35589874	C	CAT	1917.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	104378826	rs4135122	C	T	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	104391473	rs4964435	G	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	104459811	rs34011860	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.55;ReadPosRankSum=-0.832;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr12	104459905	rs35879815	T	G	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:103,106:0.51:209
chr12	104461937	rs6539123	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr12	104476177	rs12809773	C	T	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr12	104476264	rs2253274	T	C	2531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.056;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:82,124:0.60:206
chr12	104481691	rs34811234	T	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr12	104482010	rs3763999	T	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	104489120	rs2272477	T	C	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:70,78:0.53:148
chr12	104496724	rs35223676	C	T	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-1.277;QD=9.40;ReadPosRankSum=-0.703;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:57,47:0.45:104
chr12	104618454	rs6539128	A	G	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	104645363	rs7960443	G	A	8873.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr12	104645405	rs7975161	T	C	6659.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	104651594	rs7297584	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	104684773	rs11111981	A	C	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:32,62:0.66:94
chr12	104684974	rs35069007	CT	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.083;QD=2.36;ReadPosRankSum=-0.896;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	104698582	rs11111987	A	G	4129.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:166,205:0.55:371
chr12	104703836	rs7134193	A	G	5232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.829;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:237,253:0.52:490
chr12	104703957	rs35882028	T	A	2034.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	104703957	.	TCT	AGA	1243	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=27;MQ=59.45;NF=6;NR=19;PP=1243;QD=52.2587149945;SC=GGAGTCTCACTCTGTGAGACT;SbPval=0.72;Source=Platypus;TC=28;TCF=8;TCR=20;TR=25;WE=104703980;WS=104703947;set=Platypus	GT:AD:AF:DP	1/1:3,25:0.89:28
chr12	104703958	rs34794131	C	G	2033.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.30;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	104703959	rs34873076	T	A	2033.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.22;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	104703965	rs66665385	ACTCCCAGG	A	1762.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	104703991	rs10861190	A	G	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=2.074;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr12	104707151	rs5018287	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr12	104707180	rs6539137	A	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	104709559	rs4964287	C	T	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:132,119:0.47:251
chr12	104712858	.	C	CT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.920;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:100,24:0.19:124
chr12	104714847	.	CT	C	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=3.121;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=5.142;QD=0.66;ReadPosRankSum=-0.851;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:196,64:0.25:260
chr12	104718959	rs10861201	C	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	104721575	rs7962256	G	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	104733165	rs10861202	A	G	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:76,86:0.53:162
chr12	104741958	rs11112003	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr12	104851112	rs111789728	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr12	104985271	rs77877813	G	GTCT	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr12	104985289	rs1615960	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	104985407	rs11112118	T	C	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.312;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:73,78:0.52:151
chr12	104985443	rs61938575	G	A	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:71,104:0.59:175
chr12	104985540	rs11112119	G	T	2979.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:151,157:0.51:308
chr12	104985580	rs11112120	G	A	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:113,111:0.50:224
chr12	104985655	rs313323	C	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	104995800	rs5800627	A	AT	2172.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:33,124:0.79:157
chr12	105260159	rs149586274	TACACAC	T	2762.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.64;QD=36.35;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:2,74:0.97:76
chr12	105260365	rs61036188	TAA	T,TA	528.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=7.361;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.877;SOR=0.522;set=HC	GT:AD:AF:DP	1/2:8,18,24:0.36,0.48:50
chr12	105370961	rs11112272	G	A	4464.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:314,239:0.43:553
chr12	105371567	rs11112273	C	T	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:148,111:0.43:259
chr12	105371660	rs11112274	C	G	4095.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:295,221:0.43:516
chr12	105371678	rs11112275	T	C	4155.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:277,225:0.45:502
chr12	105380152	rs1129593	A	C	4638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.836;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:247,236:0.49:483
chr12	105388181	rs11112287	C	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr12	105418294	rs7304326	G	A	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,89:0.51:173
chr12	105425815	rs17036612	A	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr12	105432019	rs112805543	ATC	A	630.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=6.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=2.164;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr12	105433607	rs4964318	G	A	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:174,143:0.45:317
chr12	105443914	rs11112344	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr12	105443940	rs11112345	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr12	105445798	rs61938827	C	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	105446092	rs140372840	AT	A	1355.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	105446552	rs56188643	T	C	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	105446719	rs56118650	G	T	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	105455651	rs6539183	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	105456866	rs12372293	G	A	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	105477951	rs11112362	C	T	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	105478327	rs7303961	C	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	105504764	rs1196839	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	105504787	rs1196838	G	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	105514480	rs1196837	A	G	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	105514786	rs1196836	G	T	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	105527385	rs1211276	G	C	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	105534025	rs1196808	G	A	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	105536430	rs5800652	C	CTA	377.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=37.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	105538270	rs370837338	CT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.753;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr12	105538417	rs148267591	AGTT	A	1120.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	105540322	rs199922129	A	AT	1396.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:22,85:0.79:107
chr12	105543326	rs1196802	T	G	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	105546172	rs1663564	G	A	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr12	105568122	rs935241	G	A	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	105568176	rs935240	G	A	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr12	105582245	rs1196852	A	G	8918.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr12	106461857	rs3741885	G	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr12	106464785	rs4964437	G	C	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	106466490	rs73193828	A	C	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:63,78:0.55:141
chr12	106500158	rs35769739	GT	G	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.605;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:120,39:0.25:159
chr12	106500408	rs1427785	T	C	106.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	106532072	rs1215597	C	A	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:66,83:0.56:149
chr12	106641489	rs368519473	GGGC	G	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=3.484;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	106647783	rs2704898	T	G	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=0.421;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:65,77:0.54:142
chr12	106704974	rs4964460	G	A	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	106706035	.	ATTT	A	434.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=0.256;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr12	106708278	rs2253838	T	G	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	106708350	.	TGTGTGAGAGAGA	T	50.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=0.707;QD=1.13;ReadPosRankSum=0.851;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr12	106708352	rs71995555	TGTGAGAGAGA	T	140.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-2.372;QD=3.06;ReadPosRankSum=-0.492;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr12	106708354	rs71072670	TGAGAGA	T	364.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.995;QD=8.68;ReadPosRankSum=3.738;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr12	106708362	.	A	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.913;QD=3.40;ReadPosRankSum=3.883;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr12	106717224	rs12424952	C	A	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	106717490	rs200010594	TTTAAA	T	310.74	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=38.84;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	106723190	rs11112940	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	106751805	rs61943670	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	106763013	rs7134881	C	T	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	106763268	rs7135054	A	G	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	106773676	rs7310703	A	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	106820957	.	C	CT	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=1.613;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.205;QD=4.37;ReadPosRankSum=1.022;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:83,52:0.39:135
chr12	106890059	rs721438	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr12	106890135	rs2288270	A	G	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	106893863	rs7137638	G	T	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:58,68:0.54:126
chr12	106893930	rs7137444	A	T	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:107,99:0.48:206
chr12	106895255	rs144578311	C	CA	1300.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,51:0.53:96
chr12	107078448	rs10467029	C	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-0.298;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr12	107078562	rs5800715	A	AAAG	3461.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:93,89:0.49:182
chr12	107080617	rs56287989	CTTT	C	2537.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-1.244;QD=18.66;ReadPosRankSum=1.775;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:66,70:0.51:136
chr12	107080638	rs55658229	TCC	T	2833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.436;QD=17.38;ReadPosRankSum=1.667;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:83,80:0.49:163
chr12	107083031	rs9804754	G	A	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:138,167:0.55:305
chr12	107090201	rs10778502	T	C	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:159,176:0.53:335
chr12	107114427	rs4625579	A	G	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-1.664;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:27,36:0.57:63
chr12	107144328	rs12424114	A	G	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.173;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:83,72:0.46:155
chr12	107279615	rs118045072	G	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=0.218;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr12	107364873	rs10778520	C	T	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:101,76:0.43:177
chr12	107398862	.	TA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.839;QD=0.78;ReadPosRankSum=-0.018;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:79,25:0.24:104
chr12	107712880	rs10082935	C	T	7774.77	.	AC=1;AF=0.500;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	0/1:343,387:0.53:730
chr12	107713511	rs961498	G	C	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=0.808;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:67,63:0.48:130
chr12	107713696	rs111260184	G	A	3706.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:190,189:0.50:379
chr12	107714310	rs11383016	T	TC	1199.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr12	108003911	rs4964599	T	C	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	108082142	.	A	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.56;ReadPosRankSum=0.163;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr12	108086697	rs2287216	T	C	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	108090518	rs2287214	A	G	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	108127965	rs17306603	A	G	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	108136172	rs2302734	A	G	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	108140032	rs3803120	T	C	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	108150758	rs1814335	C	A	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	108154199	rs2302733	A	G	22208.77	.	AC=2;AF=1.00;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr12	108686008	rs1057401	C	G	3857.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:194,184:0.49:378
chr12	108687449	rs59925321	GA	G	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=3.716;QD=3.44;ReadPosRankSum=1.398;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:101,86:0.46:187
chr12	108913377	.	GT	G	78	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5010;HP=4;HapScore=4;MGOF=35;MMLQ=15;MQ=60.0;NF=0;NR=6;PP=78;QD=17.6666666667;SC=AAATGTTTTAGTTTTAAAAAA;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=6;WE=108913389;WS=108913367;set=Platypus	GT:AD:AF:DP	1/0:1,6:0.86:7
chr12	108913380	rs201412313	TTA	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.55;ReadPosRankSum=0.524;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr12	108917520	rs34982944	G	GA	583.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.204;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.416;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.490;QD=15.78;ReadPosRankSum=1.350;SOR=0.122;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr12	108918146	rs2303633	C	T	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	108918330	rs2303632	G	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr12	108919390	rs7963063	T	C	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:107,86:0.45:193
chr12	108923950	rs1549096	A	G	12914.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,514:1.00:514
chr12	108924904	rs2287549	C	T	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:160,111:0.41:271
chr12	108931779	rs2287550	C	A	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:86,88:0.51:174
chr12	108932053	rs2287551	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	108932916	rs7133076	C	T	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	108936428	rs11113982	T	C	364.84	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr12	108936516	rs888556	T	G	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	108936519	rs888557	C	T	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	108943028	rs2052423	G	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	108954502	rs1160332	G	A	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	108954823	rs1063936	C	T	29779.77	.	AC=2;AF=1.00;AN=2;DB;DP=1148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,1131:1.00:1131
chr12	108956357	rs2287554	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	108956417	rs10778647	T	G	4445.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.30;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	108956418	rs10778648	T	G	4495.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.83;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	108956433	rs2287555	C	T	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.58;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	108956526	rs60547936	A	AG	8748.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.39;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	108956610	rs2287556	C	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	108960906	rs10861945	G	T	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	108961293	rs888546	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	108961354	rs888547	T	C	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	108961383	rs888548	A	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	108985785	rs73191224	C	T	4503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.953;QD=10.31;ReadPosRankSum=1.782;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:207,230:0.53:437
chr12	108985945	rs7975237	A	G	2119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.982;QD=9.55;ReadPosRankSum=-1.375;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:112,110:0.50:222
chr12	109017898	rs2228315	C	T	7769.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:263,375:0.59:638
chr12	109025432	rs8179115	T	C	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	109095137	rs3741782	A	G	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:160,133:0.45:293
chr12	109182049	rs3741778	T	C	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:144,164:0.53:308
chr12	109183144	rs60314156	C	CT	541.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr12	109205189	rs11114060	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	109211031	rs12316621	T	C	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:46,89:0.66:135
chr12	109216904	rs7311959	A	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.16;ReadPosRankSum=-0.741;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	109217007	rs34849596	G	GT	1518.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr12	109219903	rs6539455	C	G	1762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-1.528;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:101,94:0.48:195
chr12	109221013	rs10861970	C	A	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:108,94:0.47:202
chr12	109270506	rs7136681	A	G	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:67,73:0.52:140
chr12	109277474	rs148757810	TCCCTGAGAGGGG	T	1961.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chr12	109278747	rs2111902	T	G	6177.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:267,310:0.54:577
chr12	109281310	rs7980427	G	A	4863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=-0.177;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:251,249:0.50:500
chr12	109292644	rs140881184	G	A	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr12	109293109	rs11420034	G	GA	2270.73	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:116,133:0.53:249
chr12	109293187	rs143550642	G	A	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:140,154:0.52:294
chr12	109293320	rs3918347	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr12	109309571	rs76609278	C	T	5369.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:290,277:0.49:567
chr12	109316527	.	G	A	4777.77	.	AC=1;AF=0.500;AN=2;DP=514;set=Intersection	GT:AD:AF:DP	0/1:262,248:0.49:510
chr12	109330916	rs7969098	A	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:61,37:0.38:98
chr12	109331162	rs3918305	C	T	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:107,141:0.57:248
chr12	109334718	rs142587680	G	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:75,70:0.48:145
chr12	109338835	rs36131538	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr12	109339023	rs36191519	C	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-2.519;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:68,26:0.28:94
chr12	109354632	rs36181716	T	C	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	109371381	rs149284306	C	A	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-2.743;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:118,94:0.44:212
chr12	109371442	rs36182807	G	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr12	109510086	rs111762860	G	GT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=0.725;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:208,42:0.17:250
chr12	109511144	rs7967182	T	C	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr12	109511256	rs7967322	T	C	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:107,115:0.52:222
chr12	109520769	rs16939904	A	G	6646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.586;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=4.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-1.989;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:414,334:0.45:748
chr12	109520876	rs59162254	G	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:111,82:0.42:193
chr12	109522684	rs78073059	A	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr12	109523329	.	G	T	275.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr12	109528018	rs76283368	C	A	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:90,82:0.48:172
chr12	109530278	rs145676752	G	GCA	7850.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:65,265:0.80:330
chr12	109577735	rs2878960	C	T	15948.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr12	109605898	rs34285	C	T	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	109617865	rs11065772	T	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	109625976	rs373209583	CTCCT	C	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.696;QD=29.62;ReadPosRankSum=-0.311;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr12	109629457	rs7135947	C	T	8821.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr12	109635031	rs2268393	A	G	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	109635076	rs2268392	T	C	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	109637188	rs7299171	G	C	9357.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr12	109670468	rs3742027	T	C	25821.77	.	AC=2;AF=1.00;AN=2;DB;DP=995;set=Intersection	GT:AD:AF:DP	1/1:0,979:1.00:979
chr12	109670657	rs3742026	G	C	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	109672951	rs7138373	T	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	109675029	rs2241220	T	C	14165.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr12	109683575	rs10744772	A	G	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	109685545	rs2284689	A	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr12	109691991	rs2075259	A	G	6399.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:317,319:0.50:636
chr12	109692053	rs17848835	C	T	9247.77	.	AC=1;AF=0.500;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	0/1:466,483:0.51:949
chr12	109695891	rs11066004	A	G	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.354;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-1.276;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr12	109696838	rs2075260	G	A	10357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;ClippingRankSum=0.000;DB;DP=1002;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.397;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:477,516:0.52:993
chr12	109697796	rs2075261	A	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:120,98:0.45:218
chr12	109701959	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-0.042;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:150,30:0.17:180
chr12	109704177	rs2075262	G	A	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:96,133:0.58:229
chr12	109717820	rs75265740	G	A	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:89,101:0.53:190
chr12	109723077	rs10774643	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=8.860;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=-1.327;QD=2.53;ReadPosRankSum=0.673;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr12	109723079	.	TGC	T,CGC	605.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.78;QD=25.24;SOR=2.124;set=HC	GT:AD:AF:DP	1/2:0,15,9:0.62,0.38:24
chr12	109725688	rs7959782	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr12	109728175	rs11066130	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr12	109826765	rs7973715	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	109831348	.	C	CCAACCATT	876.73	.	AC=2;AF=1.00;AN=2;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.00;QD=43.84;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	109831356	.	C	CCATCCATCCATCCATCCATT	1008.73	.	AC=2;AF=1.00;AN=2;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.56;QD=45.85;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	109835590	rs11611358	A	G	6801.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:249,333:0.57:582
chr12	109843594	rs9888353	G	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	109843666	rs9888381	C	T	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:175,158:0.47:333
chr12	109844432	rs11066505	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	109844702	rs12425103	C	T	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=-0.678;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr12	109845778	rs75978659	C	CATT	11227.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.56;QD=43.86;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr12	109847946	rs61109384	AT	A	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=1.357;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:26,19:0.42:45
chr12	109848000	rs7967632	C	G	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	109848402	rs78125930	G	GA	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	109848567	rs7315991	T	C	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	109849535	rs2196612	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.21;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	109849540	rs7316486	A	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	109849552	rs5800859	C	CCT	2208.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	109853306	rs4766598	A	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:73,53:0.42:126
chr12	109853349	rs73194218	A	G	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:95,95:0.50:190
chr12	109853462	rs4766471	G	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr12	109858918	rs367698876	AT	A	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.985;QD=6.72;ReadPosRankSum=-0.021;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr12	109859032	rs5800861	G	GC	342.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	109863721	rs67083809	TTC	T	3757.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:6,114:0.95:120
chr12	109865121	.	C	CA	77.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=0.236;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr12	109872727	rs11066569	A	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	109874230	rs2075432	A	G	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr12	109881294	rs78536103	T	C	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:101,91:0.47:192
chr12	109883254	rs3742020	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	109883374	rs3825393	T	C	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	109883577	rs7969719	C	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	109883611	.	GAGAAA	G	394.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr12	109937534	rs7298565	G	A	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	109955708	rs10850308	A	C	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	109971481	rs12303137	C	G	15099.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr12	109994870	rs9593	A	T	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	109995097	rs888192	A	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	109998821	rs78599682	T	C	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=1.828;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:101,98:0.49:199
chr12	109999048	rs12309115	C	T	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:131,133:0.50:264
chr12	110002819	rs10850380	A	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	110004960	rs874170	C	T	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	110006512	rs11836136	A	G	10280.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr12	110011229	rs10774774	GC	TT	13965.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	110012467	rs3759387	G	T	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	110012510	rs66616264	C	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	110013879	rs7957619	G	A	5594.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:271,284:0.51:555
chr12	110014055	rs3752662	C	T	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	110016947	rs7296044	T	A	968.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=1.274;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:10,67:0.87:77
chr12	110016952	rs10774779	T	A	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=2.621;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:50,32:0.39:82
chr12	110206866	.	C	T	5423.77	.	AC=1;AF=0.500;AN=2;DP=470;set=Intersection	GT:AD:AF:DP	0/1:194,255:0.57:449
chr12	110207172	rs73202455	G	T	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:63,80:0.56:143
chr12	110221631	rs10774894	G	C	3787.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:242,195:0.45:437
chr12	110226379	rs3742037	G	A	6578.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:302,324:0.52:626
chr12	110230712	rs56186049	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr12	110240838	rs3825394	T	G	6000.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr12	110293678	rs3782893	G	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	110296095	rs4766488	G	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	110318261	rs71458309	G	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	110403656	.	T	C	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.614;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:83,78:0.48:161
chr12	110418635	rs7960775	A	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	110418784	.	C	A	3825.77	.	AC=1;AF=0.500;AN=2;DP=347;set=Intersection	GT:AD:AF:DP	0/1:145,192:0.57:337
chr12	110454085	.	CT	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.636;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:84,42:0.33:126
chr12	110467144	rs61940911	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr12	110480479	.	G	GA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.321;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.546;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr12	110729807	rs35235621	G	A	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:119,110:0.48:229
chr12	110905869	rs7958683	G	A	38414.77	.	AC=2;AF=1.00;AN=2;DB;DP=1513;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,1485:1.00:1485
chr12	110939421	rs6606687	T	C	19329.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,731:1.00:731
chr12	110944299	rs61942603	G	C	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	110974890	rs10849900	T	C	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	111057896	rs61942627	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr12	111160513	.	GA	G	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.984;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:103,26:0.20:129
chr12	111290871	rs886132	G	C	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	111296332	rs4766432	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	111342278	rs147402383	C	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr12	111651876	rs73197969	T	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr12	111651949	rs3825398	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr12	111651977	rs11338501	CT	C	655.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=6.69;ReadPosRankSum=0.949;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:34,64:0.65:98
chr12	111701486	rs56249976	GA	G	1947.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:93,127:0.58:220
chr12	111733274	rs2301658	C	T	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:204,187:0.48:391
chr12	111742222	rs1362006	T	C	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:59,82:0.58:141
chr12	111757647	rs10849933	A	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr12	111758620	rs4766505	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr12	111760251	rs3742006	G	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:96,85:0.47:181
chr12	111786082	rs6490073	G	C	20108.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	1/1:0,759:1.00:759
chr12	111884608	rs3184504	T	C	7298.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:370,377:0.50:747
chr12	111992031	.	T	TA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.451;QD=2.13;ReadPosRankSum=-0.644;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr12	112036753	rs10560189	GGCT	G	12344.73	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr12	112036797	rs4098854	C	T	11847.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:24,360:0.94:384
chr12	112036929	rs695872	G	A	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	112037000	rs695871	G	C	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	112148301	.	A	AT	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.639;QD=2.25;ReadPosRankSum=-0.206;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:70,25:0.26:95
chr12	112306512	.	CT	C	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.157;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr12	112481732	.	A	AT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.355;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=1.97;ReadPosRankSum=2.527;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr12	112610714	rs11066188	G	A	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:61,62:0.50:123
chr12	112638688	rs3835014	CGTGT	C,CGT	2206.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.599;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=-0.990;QD=16.85;ReadPosRankSum=2.692;SOR=0.433;set=HC	GT:AD:AF:DP	1/2:15,30,86:0.23,0.66:131
chr12	112650216	.	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.269;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr12	113313470	rs2891411	C	T	5557.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	0/1:436,306:0.41:742
chr12	113319471	rs886476	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr12	113319600	rs2240194	C	T	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:199,147:0.42:346
chr12	113319778	rs10850088	G	A	5021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=1.032;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:361,270:0.43:631
chr12	113325460	rs7979186	T	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr12	113325629	rs4141253	T	C	3734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.904;QD=8.49;ReadPosRankSum=-0.748;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:241,199:0.45:440
chr12	113328981	rs3741982	G	A	36.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr12	113369644	rs7968145	C	T	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	113515924	rs71445596	CA	C	1011.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.560;QD=13.31;ReadPosRankSum=-0.937;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:41,35:0.46:76
chr12	113530845	rs3217697	C	CAG	5093.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.08;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	113530896	rs77550984	G	A	1273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=-1.047;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:112,70:0.38:182
chr12	113530899	rs1628639	A	G	5979.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.50;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	113531295	rs1625170	T	C	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=2.760;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	113531305	rs1674095	A	T	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	113533050	rs2243397	C	T	47661.77	.	AC=2;AF=1.00;AN=2;DB;DP=1819;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,1798:1.00:1798
chr12	113533124	rs2243396	C	T	42949.77	.	AC=2;AF=1.00;AN=2;DB;DP=1637;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,1627:1.00:1627
chr12	113539822	rs1674101	A	G	9309.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr12	113541940	rs1613480	C	T	9796.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr12	113544874	rs2468355	C	T	17578.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.029;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.12;ReadPosRankSum=0.297;SOR=0.278;set=HC	GT:AD:AF:DP	1/1:1,672:1.00:673
chr12	113545393	rs736285	A	G	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	113553408	rs1284878	C	T	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	113553481	rs1284879	C	T	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	113566050	.	G	GAC	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.882;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr12	113589598	.	C	CA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=3.452;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.281;QD=3.24;ReadPosRankSum=0.559;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	113599879	rs112213187	C	T	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-0.091;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:100,71:0.42:171
chr12	113605769	rs117291153	C	T	9020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=975;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-0.756;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:511,455:0.47:966
chr12	113754463	.	T	G	770.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr12	113837128	rs2069251	C	T	7929.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	114261237	rs2059598	A	C	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr12	114261286	rs930004	T	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	114282496	rs2075387	C	T	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:209,133:0.39:342
chr12	114282678	rs2075386	G	A	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	114296745	rs10744803	C	T	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr12	114356025	rs2279050	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=-0.935;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr12	114356357	rs10774721	T	C	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	114362483	rs3782456	C	T	7242.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr12	114362621	rs1458713	A	G	11389.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr12	114362632	rs3782458	A	G	10525.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr12	114362699	rs10774723	G	T	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr12	114374887	rs2290787	T	C	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:111,132:0.54:243
chr12	114377835	rs2290788	A	G	3950.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:156,195:0.56:351
chr12	114377877	rs2290789	T	C	6855.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:128,187:0.59:315
chr12	114377885	rs2290790	G	C	3913.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:187,128:0.41:315
chr12	114377899	rs7299217	G	C	12662.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr12	114379991	rs2290791	T	C	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,154:0.99:155
chr12	114383559	rs898081	A	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	114383651	rs12321179	C	T	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:129,127:0.50:256
chr12	114383748	rs58178208	A	G	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:155,167:0.52:322
chr12	114383892	rs73401038	C	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	114385062	rs12304773	T	G	1949.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-1.821;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:74,53:0.42:127
chr12	114385066	rs12296525	C	G	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=-1.428;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:78,54:0.41:132
chr12	114385307	rs3741693	A	G	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:104,108:0.51:212
chr12	114386572	rs7980086	C	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr12	114386639	rs7966348	A	G	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:113,120:0.52:233
chr12	114386936	rs9668746	A	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr12	114387869	rs11066844	A	G	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,73:0.56:130
chr12	114387979	rs2290796	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:137,136:0.50:273
chr12	114388115	rs58859502	G	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr12	114388141	rs61085351	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	114393028	rs1037747	C	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	114395549	rs11066852	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr12	114395571	rs2290786	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr12	114395651	rs10850256	T	C	3743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.404;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-0.701;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:135,188:0.58:323
chr12	114793240	rs883079	C	T	3848.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	114793260	rs28730761	T	C	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:70,87:0.55:157
chr12	114793285	rs201961625	CCT	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=2.131;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:189,21:0.10:210
chr12	114832510	rs2236017	C	A	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	115110241	rs55865934	GT	G	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=1.307;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr12	115110252	rs1532691	T	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=1.514;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr12	115118997	rs515746	G	A	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr12	115801070	rs1920947	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr12	115802115	.	G	GT	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=5.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=1.032;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:179,52:0.23:231
chr12	116408538	rs2304460	A	G	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr12	116412921	rs1992068	AT	TC	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	116420448	rs56159580	T	C	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr12	116429689	rs1865787	A	G	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:250,296:0.54:546
chr12	116446445	rs3741768	C	T	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:116,144:0.55:260
chr12	116457804	rs11611238	T	G	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr12	116714113	.	T	TTGTG,TTGTGTG	101	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5027,0.4972;HP=3;HapScore=3;MGOF=137;MMLQ=19;MQ=53.17;NF=2,2;NR=1,1;PP=101,17;QD=34.6666666667;SC=CTTGTTGCTTTTGTGTGTGTG;SbPval=0.42;Source=Platypus;TC=6;TCF=5;TCR=1;TR=3,3;WE=116714121;WS=116714103;set=Platypus	GT:AF:DP	0/1:0.50:6
chr12	116714815	.	A	AC	2042.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=1.240;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:155,108:0.41:263
chr12	116866112	rs202127912	CCA	C	594.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=0.939;QD=4.80;ReadPosRankSum=2.347;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:87,37:0.30:124
chr12	116866113	rs370202370	CA	C	1512.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.775;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=1.687;QD=12.40;ReadPosRankSum=-0.499;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:51,71:0.58:122
chr12	117013730	rs7303998	G	C	4116.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:168,203:0.55:371
chr12	117014131	rs55717114	G	GA	3250.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:161,168:0.51:329
chr12	117014174	rs139308338	GA	G	860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-6.223;QD=8.20;ReadPosRankSum=-0.120;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:47,58:0.55:105
chr12	117175608	rs73220422	C	T	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.380;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:71,69:0.49:140
chr12	117186316	rs1532395	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	117204666	rs113021396	G	A	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:125,101:0.45:226
chr12	117217141	rs4767452	T	C	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	117286981	rs4767461	C	T	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	117289613	rs903775	G	C	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=26.22;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	117290601	rs903772	T	C	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	117349014	rs11068230	C	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	117383320	rs4076700	G	A	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	117402755	rs6490101	T	C	50.28	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	117423264	rs7131746	G	A	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	117448196	rs146667375	G	A	5644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-1.278;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:325,297:0.48:622
chr12	117465857	rs4529958	T	C	10732.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr12	117584066	rs3741467	G	A	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:180,198:0.52:378
chr12	117593216	rs4767506	C	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr12	117593387	rs79478437	G	A	3571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=-0.317;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:106,94:0.47:200
chr12	117593391	rs4767507	A	G	3619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.19;ReadPosRankSum=-0.331;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:103,96:0.48:199
chr12	117595930	rs2279765	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr12	117595978	rs2279766	A	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	117603561	rs4767511	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	117611934	rs57632063	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr12	117612357	rs3817015	T	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr12	117636032	rs11068409	G	A	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.721;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr12	117636041	.	C	T	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-0.517;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:37,23:0.38:60
chr12	117636074	rs112407951	A	AT	773.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.412;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr12	117636075	rs59514465	A	T	782.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.428;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr12	117646196	.	CGTGT	C	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.24;ReadPosRankSum=-1.231;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr12	117653243	rs149003143	C	CT	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.214;QD=2.96;ReadPosRankSum=-0.041;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr12	117665544	rs904658	A	C	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,68:0.48:142
chr12	117669914	rs3741475	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr12	117672339	rs1875140	T	C	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.728;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:26,30:0.54:56
chr12	117672711	rs10588671	CTAT	C	277.76	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	117681353	rs34385734	A	ACCAT	1303.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	117685138	rs2291908	T	C	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:100,95:0.49:195
chr12	117685270	rs1047735	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:100,76:0.43:176
chr12	117691727	rs2682822	T	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr12	117701714	rs2293054	A	G	14210.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,550:1.00:550
chr12	117705774	rs3741480	C	T	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	117718473	rs11282297	G	GGGTAAAA	10102.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	117718686	rs2293051	G	C	8062.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr12	117768105	rs111326073	G	GCA,GCACA	3419.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=113;set=Intersection	GT:AF:DP	1/2:0.29,0.65:105
chr12	117905636	rs36058871	T	TA,TAA	2409.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.563;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=0.739;SOR=1.059;set=HC	GT:AD:AF:DP	1/2:10,99,26:0.73,0.19:135
chr12	117965107	rs112913826	G	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-1.043;QD=6.52;ReadPosRankSum=-2.797;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr12	117996471	rs73405365	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr12	118017201	rs4767569	C	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	118020045	rs12369419	C	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:73,74:0.50:147
chr12	118198833	rs141457085	G	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr12	118199286	rs617641	C	G	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	118405834	.	CTTTTTTTTTTTTTT	C	750.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=18.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.64;SOR=1.839;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr12	118455759	rs2393374	T	G	21933.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.36;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,865:1.00:865
chr12	118464688	rs5745870	A	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	118464872	rs5745871	A	C	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=2.478;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:76,42:0.36:118
chr12	118467369	rs4766894	T	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	118467457	rs11331177	AG	A	2270.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:56,72:0.56:128
chr12	118467553	rs4767654	A	G	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	118473054	rs9788041	T	C	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	118475967	rs11068779	T	C	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr12	118476079	rs11068780	C	T	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:49,55:0.53:104
chr12	118506186	rs67405503	A	T	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	118508796	rs7135008	A	G	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=0.425;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:119,90:0.43:209
chr12	118509086	rs7135400	A	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	118509138	rs9669300	A	G	2095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=4.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.50;ReadPosRankSum=-2.413;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:72,55:0.43:127
chr12	118509148	rs7308222	C	T	2666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=-1.530;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:89,68:0.43:157
chr12	118509157	rs7296643	T	C	3257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=-1.971;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:117,103:0.47:220
chr12	118520170	rs7488309	G	A	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:83,85:0.51:168
chr12	118520240	rs6490164	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr12	118541239	rs7961197	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr12	118589069	rs2249624	G	A	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.779;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=7.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=0.133;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr12	118589092	rs140297022	GCGCA	G	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.977;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr12	118599500	rs74622505	T	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	118650917	rs353886	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-0.660;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	118673483	rs5801274	G	GA	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.866;QD=7.31;ReadPosRankSum=-1.304;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,31:0.52:60
chr12	118681158	rs708862	T	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr12	118682751	rs428073	C	T	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:183,151:0.45:334
chr12	118828755	rs492939	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	119563064	rs7311828	A	G	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	119563084	rs7296134	C	G	7353.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr12	119563128	rs34183325	C	T	6273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.255;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:289,307:0.52:596
chr12	119563288	rs34186549	A	AC	11189.73	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=32.15;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	119563325	rs12422371	C	T	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:103,70:0.40:173
chr12	119563372	rs58198276	C	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr12	119568421	rs7298308	C	G	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	119568670	rs7298583	C	A	15412.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr12	119568691	rs4298970	A	G	13764.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	119568721	rs11064675	T	C	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:86,121:0.58:207
chr12	119588962	rs2723880	G	A	7858.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:339,396:0.54:735
chr12	119591176	rs34002484	A	AC	1069.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	119866533	rs1064319	A	G	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:130,144:0.53:274
chr12	119871161	rs12322291	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr12	119871266	rs2293495	C	T	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:74,65:0.47:139
chr12	119871387	rs1716471	A	G	3610.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:260,199:0.43:459
chr12	119871493	rs1716470	G	A	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr12	119871533	rs1727388	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr12	119937983	rs482802	A	C	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	119957813	rs76512640	G	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:87,102:0.54:189
chr12	119957861	rs708884	T	C	3865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-2.468;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:146,197:0.57:343
chr12	119958068	rs573590	T	C	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	119960612	rs708887	G	T	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.17;ReadPosRankSum=0.276;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:20,25:0.56:45
chr12	119960622	rs77377737	T	C	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=0.245;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr12	119978404	rs708889	A	G	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:138,150:0.52:288
chr12	120067561	rs2301653	T	C	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	120067727	rs2301654	C	T	8805.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	120067864	rs2893805	G	A	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	120078577	rs2301655	T	C	6331.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr12	120078664	rs111558498	A	AAG	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.716;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr12	120106376	rs6490267	G	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.99;ReadPosRankSum=-0.378;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	120112099	rs278145	C	T	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:70,76:0.52:146
chr12	120114205	rs10849690	C	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr12	120114507	rs278149	G	T	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:151,147:0.49:298
chr12	120126074	rs10669112	A	AAGG	3398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=0.685;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:99,89:0.47:188
chr12	120135717	rs278126	G	T	4334.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:236,222:0.48:458
chr12	120150196	rs804667	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr12	120156141	rs278102	G	A	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:72,68:0.49:140
chr12	120158203	rs7299963	C	T	1604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-1.626;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:104,84:0.45:188
chr12	120171995	rs278109	T	C	13161.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr12	120172173	rs11064891	G	A	6627.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:253,322:0.56:575
chr12	120189879	rs904655	A	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.544;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:59,14:0.19:73
chr12	120189888	rs904654	T	C	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.831;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr12	120195354	rs34851548	TG	T	1565.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr12	120220282	rs440299	A	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr12	120220589	rs385959	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr12	120270528	rs4767849	T	C	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.124;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:65,54:0.45:119
chr12	120499446	rs11431036	A	AG	3713.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:136,123:0.47:259
chr12	120510171	rs11340414	TA	T	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	120518935	rs112656471	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr12	120534471	rs1054631	C	G	2843.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:113,133:0.54:246
chr12	120535169	rs61748076	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.064;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr12	120536783	rs7970908	C	T	14729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=1327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-0.451;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:575,727:0.56:1302
chr12	120537042	rs7971249	C	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr12	120541553	rs11065019	A	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,58:0.53:109
chr12	120546136	rs7139151	G	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.83;ReadPosRankSum=0.648;SOR=1.560;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr12	120546145	rs7294975	C	G	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=-0.389;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr12	120567406	rs2240312	C	A	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	120575549	rs3864938	A	C	16295.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr12	120588852	rs4503602	A	G	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	120589160	rs2286046	A	G	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	120591251	rs10735071	C	T	14879.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr12	120606163	rs6490286	T	C	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	120636189	.	CA	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.056;QD=1.55;ReadPosRankSum=0.959;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr12	120654678	rs147801817	C	T	12720.77	.	AC=1;AF=0.500;AN=2;DB;DP=1223;set=Intersection	GT:AD:AF:DP	0/1:577,633:0.52:1210
chr12	120661977	rs4767884	T	C	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr12	120662235	rs11065054	C	T	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:170,237:0.58:407
chr12	120720038	rs7960743	T	C	9697.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr12	120750239	rs2261612	A	G	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	120783527	rs1076205	G	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	120783561	rs1076206	T	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	120791042	rs1007469	G	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	120794653	rs1179441	T	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	120796703	rs1179445	T	A	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	120800823	rs757123	A	G	8860.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr12	120801064	rs34243955	GC	G	422.50	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr12	120806129	rs111293994	C	CT	8772.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=37.65;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	120897652	rs28390349	T	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr12	120907271	rs11548262	G	T	5240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.139;QD=10.48;ReadPosRankSum=0.020;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:234,266:0.53:500
chr12	120947948	rs500003	G	A	10825.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr12	120954490	rs3742049	C	T	6128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-1.454;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:292,310:0.51:602
chr12	120959924	rs1167696	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:50,27:0.35:77
chr12	120964067	rs117828948	C	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr12	120977381	rs1167723	T	C	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:71,108:0.60:179
chr12	120994932	rs7956998	G	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	120995332	rs2292681	G	A	3100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.848;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:250,176:0.41:426
chr12	120998481	rs787949	G	A	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	121004564	rs35710723	CA	C	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.905;QD=7.59;ReadPosRankSum=1.243;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:18,44:0.71:62
chr12	121008958	rs2280168	G	A	4531.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:167,225:0.57:392
chr12	121012456	rs11611781	C	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr12	121014841	rs3088345	G	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr12	121014987	.	G	GT	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.540;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:180,43:0.19:223
chr12	121017171	rs7174	A	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	121017264	rs2301456	C	T	3479.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:244,185:0.43:429
chr12	121017439	rs563920	A	G	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	121018862	rs10774559	C	T	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,32:0.51:63
chr12	121019323	rs591992	T	C	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	121093629	rs112935060	CGTGCGT	C	2592.73	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:290,147:0.34:437
chr12	121094110	rs569499	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	121097622	rs529584	G	A	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	121131891	rs2393749	C	T	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-0.706;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:31,68:0.69:99
chr12	121132100	rs7964786	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	121133037	rs504403	G	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr12	121151062	rs3833788	CTCTCTTG	C	3026.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.006;QD=19.28;ReadPosRankSum=1.633;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:78,79:0.50:157
chr12	121157535	rs56179458	GC	AA	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr12	121157851	rs3752531	A	G	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:134,132:0.50:266
chr12	121163518	rs2239760	C	A	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=1.643;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr12	121174899	rs3914	T	C	4574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.316;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:262,241:0.48:503
chr12	121175984	rs555404	T	C	5268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.109;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:181,262:0.59:443
chr12	121176083	rs1799958	G	A	6882.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:347,352:0.50:699
chr12	121176679	rs3915	C	T	5184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-2.621;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:215,259:0.55:474
chr12	121177272	rs3916	G	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr12	121220375	rs2393717	G	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr12	121221628	rs7137504	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.721;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr12	121222411	rs3213570	C	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:97,56:0.37:153
chr12	121248584	rs674021	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:107,112:0.51:219
chr12	121341535	rs35912287	G	GC	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.915;QD=5.72;ReadPosRankSum=0.102;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:72,38:0.35:110
chr12	121341762	rs7966446	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr12	121341849	rs2686458	A	G	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.49;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	121416622	rs1169289	C	G	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:181,222:0.55:403
chr12	121416650	rs1169288	A	C	4164.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:186,203:0.52:389
chr12	121416988	rs2244608	A	G	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr12	121426594	rs1169294	G	A	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr12	121426901	rs12427353	G	C	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:80,80:0.50:160
chr12	121431300	rs1169301	C	T	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:29,66:0.69:95
chr12	121432117	rs56348580	G	C	7139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=4.426;QD=8.78;ReadPosRankSum=-1.040;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:440,373:0.46:813
chr12	121432302	rs1169302	T	G	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr12	121434630	rs55853809	C	CTCATTCAT	4696.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.206;QD=43.49;ReadPosRankSum=0.604;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:2,106:0.98:108
chr12	121434833	rs2259852	G	A	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.286;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:17,43:0.72:60
chr12	121435342	rs2259820	C	T	4808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.064;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:212,230:0.52:442
chr12	121435427	rs2464196	G	A	7988.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:425,409:0.49:834
chr12	121435475	rs2464195	G	A	8318.77	.	AC=1;AF=0.500;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	0/1:461,436:0.49:897
chr12	121435587	rs2259816	G	T	4428.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:218,219:0.50:437
chr12	121437114	rs55834942	G	A	14515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=1681;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=8.73;ReadPosRankSum=0.157;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:899,763:0.46:1662
chr12	121437221	rs1169304	T	C	31886.77	.	AC=2;AF=1.00;AN=2;DB;DP=1261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=26.03;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,1225:1.00:1225
chr12	121437382	rs1169305	A	G	7468.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	121438844	rs735396	T	C	5299.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:215,260:0.55:475
chr12	121439433	rs1169310	G	A	5320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-1.822;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:272,270:0.50:542
chr12	121442199	rs3751151	T	A	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:182,99:0.35:281
chr12	121450165	rs2264750	C	T	1159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.158;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:65,59:0.48:124
chr12	121450354	rs2264778	C	A	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr12	121450384	rs2254971	G	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr12	121454257	rs2258227	T	A	27805.77	.	AC=2;AF=1.00;AN=2;DB;DP=1068;set=Intersection	GT:AD:AF:DP	1/1:0,1062:1.00:1062
chr12	121454313	rs2258287	C	A	7279.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	0/1:384,360:0.48:744
chr12	121471337	rs3213545	G	A	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:190,220:0.54:410
chr12	121603053	rs208304	T	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr12	121603118	rs507085	T	C	4566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=-0.918;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:154,118:0.43:272
chr12	121603122	rs654856	C	A	4582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-0.426;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:167,126:0.43:293
chr12	121603745	rs208306	T	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr12	121603825	rs36144485	ATGTT	A	2856.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:71,74:0.51:145
chr12	121603856	rs208307	C	G	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:117,104:0.47:221
chr12	121605599	rs686638	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr12	121613113	.	C	CAAAAAA	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-3.360;QD=6.33;ReadPosRankSum=0.683;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr12	121615103	rs1718119	G	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:86,90:0.51:176
chr12	121615283	rs1653598	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr12	121618278	rs112146943	CT	C	563.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.423;QD=5.17;ReadPosRankSum=0.004;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:55,54:0.50:109
chr12	121622023	rs1626329	C	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.861;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.303;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr12	121622196	rs2230912	A	G	4881.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:358,271:0.43:629
chr12	121622304	rs3751143	A	C	6633.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:288,328:0.53:616
chr12	121622520	rs1653624	A	T	8719.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr12	121622563	rs1621388	G	A	2375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.349;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:106,117:0.52:223
chr12	121678298	rs143403727	G	A	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:104,150:0.59:254
chr12	121678327	rs63023660	C	CTTT	958.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=1.038;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:75,41:0.35:116
chr12	121682051	rs2686340	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr12	121690305	rs112943694	T	TCTGGTGATCCGC	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-1.228;QD=11.62;ReadPosRankSum=0.309;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	121690548	rs2686344	T	C	3045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=-0.314;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:76,85:0.53:161
chr12	121690555	rs2686345	T	C	2855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.85;ReadPosRankSum=0.354;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:65,72:0.53:137
chr12	121698396	rs111933695	C	CAGAA	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	121701438	rs75657508	G	GA	1209.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:71,64:0.47:135
chr12	121701681	rs2230776	G	A	3466.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:195,181:0.48:376
chr12	121706533	rs1718120	T	G	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	121712077	rs3817190	T	A	4728.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:288,241:0.46:529
chr12	121712301	rs28360477	C	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:140,98:0.41:238
chr12	121712450	rs74450939	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr12	121757660	rs2942064	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr12	121764799	rs4980993	A	C	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	121768248	rs2280067	C	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr12	121769265	rs62620751	T	C	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:181,193:0.52:374
chr12	121773552	rs3751162	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr12	121779733	rs10400545	A	G	4577.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:236,239:0.50:475
chr12	121785795	rs1169961	C	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr12	121954670	rs11433051	G	GA	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=0.709;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:7,26:0.79:33
chr12	122017894	.	GAAAA	G	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.109;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr12	122064773	rs141919534	CCCGCCA	C	13153.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr12	122079189	rs3741595	C	T	11818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=1248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-0.982;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:634,596:0.48:1230
chr12	122079441	rs3825175	T	C	10445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=0.000;DB;DP=1185;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.270;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:624,552:0.47:1176
chr12	122097043	rs63632160	GCACA	G	634.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:89,45:0.34:134
chr12	122181414	rs77377959	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr12	122186268	rs28651018	C	T	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:177,151:0.46:328
chr12	122186317	rs28655666	G	A	3711.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:195,189:0.49:384
chr12	122199444	rs76845075	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr12	122209613	rs11043192	G	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr12	122212525	rs11043195	C	G	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:76,90:0.54:166
chr12	122212659	rs11043196	C	T	5022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.971;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:246,255:0.51:501
chr12	122212752	rs7314742	G	T	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr12	122213144	rs73413708	G	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr12	122217856	rs59641582	G	GGT	4087.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=43.49;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	122231368	rs2707067	C	A	6925.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.624;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=0.594;SOR=0.272;set=HC	GT:AD:AF:DP	1/1:1,269:1.00:270
chr12	122231573	rs2707066	C	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	122243595	rs67605254	ATT	A	398.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr12	122243905	rs1168666	C	T	16445.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,643:1.00:643
chr12	122248582	rs895952	C	G	38326.77	.	AC=2;AF=1.00;AN=2;DB;DP=1501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,1478:1.00:1478
chr12	122261456	rs3741593	G	A	6338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.318;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:277,305:0.52:582
chr12	122281575	rs1795963	A	G	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	122284715	rs2247291	T	C	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	122287132	rs3832816	CT	C	602.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=20.78;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	122292546	rs3741586	G	A	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:168,145:0.46:313
chr12	122295335	rs1154510	T	C	22872.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.86;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,696:1.00:696
chr12	122295335	.	TGGCCTGAAT	CGGCCTGAAA,CGGCCTGAAT	2622	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=7;MMLQ=23;MQ=59.97;NF=49,141;NR=83,198;PP=1713,2622;QD=13.3823323853;SC=TAGAATGACGTGGCCTGAATC;SbPval=0.75;Source=Platypus;TC=340;TCF=142;TCR=198;TR=132,339;WE=122295352;WS=122295325;set=Platypus	GT:AF:DP	0/1:0.39:340
chr12	122295344	rs2707072	T	A	4778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=-0.881;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:376,261:0.41:637
chr12	122296784	rs3741591	C	T	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:30,42:0.58:72
chr12	122326812	rs2230681	T	C	10082.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr12	122348746	rs4069666	A	G	5176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-2.041;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:250,264:0.51:514
chr12	122348938	rs142734893	T	TTTTTG	1235.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr12	122353796	rs14259	A	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:116,95:0.45:211
chr12	122359172	rs6486782	T	C	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:61,42:0.41:103
chr12	122359397	rs142042908	G	GGAGGAGGAGGAGAAA	4461.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=49.03;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	122359698	.	CTT	C,CTTTT	219.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=19.98;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:0,4,7:0.36,0.64:11
chr12	122361929	rs34885077	CT	C	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	122369762	rs7313748	C	T	2246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.556;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:123,115:0.48:238
chr12	122386807	rs76025563	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.09;ReadPosRankSum=-0.120;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr12	122389248	rs1185260	A	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	122391963	rs1154513	A	G	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	122392038	rs11043265	C	T	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:142,109:0.43:251
chr12	122396395	rs17852561	C	T	3749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=2.126;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:160,182:0.53:342
chr12	122405912	rs1169081	G	T	5501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=3.086;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:267,279:0.51:546
chr12	122409664	rs658957	T	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr12	122413196	rs77422261	T	C	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:55,72:0.57:127
chr12	122439369	rs1182927	T	C	11464.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr12	122468756	rs59397548	A	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr12	122481879	rs34821485	A	C	13533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=1254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.226;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:586,653:0.53:1239
chr12	122492598	rs2280573	A	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr12	122497001	rs28629903	T	C	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:106,79:0.43:185
chr12	122516897	rs147186759	G	A	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:102,98:0.49:200
chr12	122611620	rs75503016	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.25;ReadPosRankSum=-0.566;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr12	122611641	rs78324047	C	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr12	122611934	rs113864314	C	T	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,58:0.60:97
chr12	122612325	rs7488393	G	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:78,79:0.50:157
chr12	122612350	rs7486198	G	T	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:122,135:0.53:257
chr12	122612598	rs7484733	T	C	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:63,74:0.54:137
chr12	122612625	rs10847611	C	G	1450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.15;ReadPosRankSum=1.219;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:32,40:0.56:72
chr12	122612635	rs6489238	G	A	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.22;ReadPosRankSum=0.474;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:27,37:0.58:64
chr12	122613540	rs6489244	T	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr12	122613599	rs10847853	A	G	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:58,67:0.54:125
chr12	122614209	rs5801481	CT	C	8062.73	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:233,282:0.55:515
chr12	122615515	rs4758654	C	G	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:105,97:0.48:202
chr12	122616759	rs7955571	G	A	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.731;QD=11.85;ReadPosRankSum=2.995;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:103,53:0.34:156
chr12	122616766	rs7955575	G	A	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.110;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.701;QD=11.26;ReadPosRankSum=3.152;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:110,52:0.32:162
chr12	122617989	rs7978353	A	G	5696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=781;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-0.606;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:463,308:0.40:771
chr12	122618042	rs113336247	G	A	7221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.090;ClippingRankSum=0.000;DB;DP=889;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=1.461;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:495,368:0.43:863
chr12	122618752	rs370257177	G	GT	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.027;QD=7.21;ReadPosRankSum=-1.779;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr12	122619528	rs11287019	CT	C	188.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr12	122622207	rs11307581	CT	C	6232.73	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:312,224:0.42:536
chr12	122623000	rs4758686	T	C	4204.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:335,234:0.41:569
chr12	122625212	rs7488857	A	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr12	122626842	rs4758685	G	A	6415.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;set=Intersection	GT:AD:AF:DP	0/1:518,353:0.41:871
chr12	122658383	rs6489173	A	G	5538.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=-1.132;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:2,218:0.99:220
chr12	122667631	rs77165791	T	G	3424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=1.923;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:146,169:0.54:315
chr12	122674032	rs10847725	C	T	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	122674143	rs11060051	G	C	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:69,80:0.54:149
chr12	122674758	rs4758651	G	A	33674.77	.	AC=2;AF=1.00;AN=2;DB;DP=1331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,1303:1.00:1303
chr12	122676208	rs78128618	A	T	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=0.493;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr12	122684966	rs11060679	G	C	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	122691738	rs4758675	C	A	21087.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,787:1.00:787
chr12	122723317	.	TAC	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.117;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr12	122760929	.	CCA	C	842.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.187;ClippingRankSum=0.000;DP=409;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=3.849;QD=2.24;ReadPosRankSum=0.421;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:310,67:0.18:377
chr12	122762763	rs3066171	G	GA	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=1.908;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:89,32:0.26:121
chr12	122804034	rs3825097	A	G	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr12	122812503	rs1129167	G	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr12	122817507	rs7956480	A	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:75,44:0.37:119
chr12	122838956	rs4997380	A	G	882.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=-1.515;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:19,43:0.69:62
chr12	122862560	rs55834409	C	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr12	122865029	rs1803290	T	C	4038.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:238,211:0.47:449
chr12	122964708	rs10846978	T	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=0.820;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:12,23:0.66:35
chr12	122966016	rs57144421	T	TA	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=1.139;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr12	122966373	rs4758692	T	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=0.712;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	122983460	rs7314638	A	G	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.613;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:54,56:0.51:110
chr12	122991478	rs9988963	C	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-3.397;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:20,28:0.58:48
chr12	122993011	rs10773230	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr12	122995468	rs10709275	GA	G	1292.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr12	122999358	rs11322682	CA	C	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=1.054;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr12	122999535	rs6489056	C	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr12	123001737	rs57311174	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr12	123003317	rs11058562	T	C	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr12	123024332	.	CT	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=8.143;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.225;QD=3.63;ReadPosRankSum=-0.763;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr12	123060158	rs369053387	A	G	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:168,140:0.45:308
chr12	123061352	.	A	AT	45	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=7;HapScore=2;MGOF=0;MMLQ=26;MQ=60.72;NF=3;NR=0;PP=45;QD=22.0;SC=CATTATTTAAATTTTTTTGCC;SbPval=1.0;Source=Platypus;TC=6;TCF=4;TCR=2;TR=3;WE=123061360;WS=123061342;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr12	123067587	rs7398861	G	A	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=-1.049;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:53,54:0.50:107
chr12	123069590	rs111624734	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.208;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr12	123071365	rs7311684	AT	TA	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.547;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-0.970;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr12	123075869	.	CTT	C	1674.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=3.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-0.953;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:54,47:0.47:101
chr12	123079020	rs10847242	T	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr12	123079035	rs4319547	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	123087442	rs7307735	A	G	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:125,136:0.52:261
chr12	123103115	rs376934174	CA	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.990;QD=0.62;ReadPosRankSum=-1.480;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:119,35:0.23:154
chr12	123107165	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.073;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr12	123110654	rs3803005	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	123186880	rs28682471	C	T	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=16.278;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=38.234;MLEAC=1;MLEAF=0.500;MQ=51.11;MQRankSum=-8.492;QD=0.86;ReadPosRankSum=-2.287;SOR=3.722;set=HC	GT:AD:AF:DP	0/1:608,79:0.11:687
chr12	123200099	rs61955034	T	C	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	123200247	rs56308926	G	C	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	123200334	rs116821988	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=16.406;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=81.269;MLEAC=1;MLEAF=0.500;MQ=47.41;MQRankSum=-7.104;QD=0.23;ReadPosRankSum=-1.789;SOR=5.728;set=HC	GT:AD:AF:DP	0/1:318,35:0.10:353
chr12	123200354	rs200905183	G	A	2948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.744;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-1.866;QD=9.02;ReadPosRankSum=-0.606;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:167,160:0.49:327
chr12	123200527	rs118091133	T	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=41.30;MQRankSum=-1.981;QD=16.54;ReadPosRankSum=-1.068;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	123200693	rs17884481	A	G	9256.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr12	123200768	rs1798192	T	G	14608.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:4,571:0.99:575
chr12	123200937	rs1696352	T	G	17141.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr12	123201291	rs3825156	A	G	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:314,197:0.39:511
chr12	123265952	rs1798563	A	G	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	123281967	rs10744394	G	A	7414.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	123290951	rs34775544	GTT	G	2824.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=6.693;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.696;QD=15.27;ReadPosRankSum=-0.861;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:43,142:0.77:185
chr12	123297718	rs4759391	T	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	123307754	rs7954285	CA	TG	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.58;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	123333065	rs2135014	C	T	14328.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr12	123335240	.	T	TG	178.77	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.63;QD=25.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	123335287	rs12369846	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.00;QD=23.54;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	123335483	rs2271048	A	G	9321.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	123335488	rs2271049	G	A	9239.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	123335527	rs2271050	C	T	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	123339344	rs2292136	A	G	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	123339358	rs2292137	C	G	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr12	123339712	rs2292138	A	G	16709.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr12	123340453	rs11418615	G	GC	8231.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=36.42;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	123341289	rs897386	A	C	1141.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.675;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=-1.201;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:2,42:0.95:44
chr12	123341297	rs897385	A	G	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	123341833	rs7138398	G	C	10156.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=26.31;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,386:1.00:386
chr12	123341863	rs2343109	G	C	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.38;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr12	123342628	rs34131980	CCTCTT	C	12857.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr12	123343571	rs2343110	T	G	34251.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	1/1:6,791:0.99:797
chr12	123343572	rs5801491	G	GGC	17854.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	1/1:12,726:0.98:738
chr12	123344910	rs937765	A	C	4924.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	123345347	rs7306948	G	A	8251.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	123345360	rs7298176	T	C	8199.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr12	123345736	rs10847910	C	G	33100.77	.	AC=2;AF=1.00;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	1/1:0,813:1.00:813
chr12	123345756	rs3215148	G	GC	30868.73	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr12	123352179	rs3825143	C	T	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	123433137	rs10848106	T	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	123470586	rs12828755	C	T	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	123471094	rs12811109	G	A	12814.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr12	123471402	rs2049506	T	C	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	123519172	rs139063938	G	C	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	123707529	rs12579925	A	G	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:6,108:0.95:114
chr12	123794022	rs6488867	T	C	7802.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:1,290:1.00:291
chr12	123806219	rs1060105	C	T	16465.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,641:1.00:641
chr12	123810662	rs111400678	A	AC	3845.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=31.78;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	123812207	rs7959415	C	T	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	123812611	rs10846517	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	123813493	rs7301163	C	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	123815146	.	TAA	T	88.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.88;ReadPosRankSum=-1.383;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	123815668	rs6488869	A	C	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	123816007	rs11282939	T	TATGTTG	1620.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	123821234	rs7486223	T	A	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	123825339	rs7312145	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	123825389	rs7315453	T	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	123825559	rs12322888	C	T	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	123832710	rs11325003	TA	T	11219.73	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.66;QD=27.84;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr12	123832746	rs10846523	G	A	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr12	123875394	rs28660993	C	T	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	123881176	rs28372579	A	G	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	123907563	rs28625019	G	A	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.190;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	123907750	rs71085902	G	GT,GTT	1043.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.10;MQRankSum=1.303;QD=15.13;ReadPosRankSum=-1.088;SOR=0.950;set=HC	GT:AD:AF:DP	1/2:8,40,21:0.58,0.30:69
chr12	123960444	rs375190049	ATTTTTT	A	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.75;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	123960474	rs28971833	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	123984181	.	C	A	3854.77	.	AC=1;AF=0.500;AN=2;DP=322;set=Intersection	GT:AD:AF:DP	0/1:131,185:0.59:316
chr12	124003047	rs60479214	CA	C	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.886;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:129,59:0.31:188
chr12	124007945	rs76113463	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr12	124008073	rs2292500	A	G	9540.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr12	124021035	.	A	ATTT	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=1.242;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr12	124069111	rs71088937	GGGC	G	6730.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	124069213	rs786446	T	C	6527.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr12	124072268	rs35178369	G	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.452;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:28,18:0.39:46
chr12	124086620	rs786427	G	C	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	124086998	rs786428	C	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	124090453	rs786436	A	G	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	124090605	rs4047521	ACT	A	7616.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	124102562	.	G	GT	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.378;QD=3.25;ReadPosRankSum=-0.068;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chr12	124116817	.	T	TA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=3.912;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-1.357;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:76,18:0.19:94
chr12	124172760	.	CT	C	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.984;QD=4.18;ReadPosRankSum=-0.960;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:49,53:0.52:102
chr12	124207098	rs7301641	T	C	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	124209332	rs1139789	T	C	7741.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	124209352	rs11837144	C	T	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	124210782	rs1399961	T	C	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr12	124218359	rs10744159	T	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	124220055	rs2271660	T	C	8838.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr12	124220354	rs2333838	A	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	124229429	rs7135542	T	C	9408.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr12	124246910	rs116918834	G	A	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:71,76:0.52:147
chr12	124265687	rs11057353	T	C	4662.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:246,244:0.50:490
chr12	124267638	rs11057354	A	G	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	124274474	rs10846559	A	G	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:117,112:0.49:229
chr12	124274758	rs35056478	C	CT	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	124281322	rs76791219	T	C	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:268,179:0.40:447
chr12	124297653	rs75275217	G	A	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-1.976;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:58,48:0.45:106
chr12	124298224	rs75207436	G	T	3652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.731;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-0.056;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:242,190:0.44:432
chr12	124315327	.	TA	T	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.339;QD=3.33;ReadPosRankSum=1.007;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:41,31:0.43:72
chr12	124315343	rs7976816	T	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.507;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-1.078;QD=2.37;ReadPosRankSum=-1.783;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr12	124317874	rs78764267	C	T	3662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-0.887;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:210,190:0.47:400
chr12	124319864	rs4930730	T	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	124325977	rs4930729	T	G	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr12	124332702	rs10846561	A	G	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr12	124333519	rs7960854	C	T	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	124343620	rs7314612	G	A	2678.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:159,142:0.47:301
chr12	124350360	rs7313897	G	C	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr12	124350444	rs7314963	C	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:86,54:0.39:140
chr12	124350704	rs10773043	T	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr12	124355944	rs117975072	C	T	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:130,155:0.54:285
chr12	124360117	rs10846567	G	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr12	124362256	rs113178558	T	TG	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.336;QD=7.00;ReadPosRankSum=0.277;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr12	124363724	rs72053758	GTGTC	G	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	124363986	rs117792477	G	T	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:97,54:0.36:151
chr12	124364131	rs1317312	G	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,54:0.49:110
chr12	124366150	rs34756279	CT	C	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.726;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:127,47:0.27:174
chr12	124371614	rs117282643	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr12	124377814	rs6488908	A	G	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-0.945;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:124,84:0.40:208
chr12	124383044	rs12306328	T	C	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	124387574	rs58411567	G	A	5247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.275;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=3.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=1.105;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:190,151:0.44:341
chr12	124387586	rs61587964	A	G	5005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=4.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=0.440;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:183,149:0.45:332
chr12	124387669	rs75558206	C	T	2585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=4.275;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:210,139:0.40:349
chr12	124393117	rs78985577	GG	AT	3848.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;JOINED;set=Intersection	GT:AD:AF:DP	0/1:93,101:0.52:194
chr12	124398843	rs113172657	A	ACTG	3111.73	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:193,153:0.44:346
chr12	124399155	rs79478560	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr12	124399550	rs1316952	T	C	1591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-2.667;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:153,93:0.38:246
chr12	124409502	rs7133378	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr12	124414098	rs3802999	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr12	124417973	rs56219209	C	T	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:119,100:0.46:219
chr12	124418472	rs77020228	C	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr12	124418674	rs12298484	C	T	3730.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:205,193:0.48:398
chr12	124419062	rs11057396	A	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:114,78:0.41:192
chr12	124420076	rs113646068	C	CAGGA	651.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr12	124427887	rs111854458	G	C	1680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=1.042;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:85,85:0.50:170
chr12	124428162	rs4930725	T	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr12	124799387	rs904647	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	124810174	rs10846657	G	A	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	124810968	rs1006100	C	T	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	124824721	rs143952466	C	CGCCGCTGCT	7258.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	124825447	rs1702334	A	G	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	124827729	rs61755987	C	T	4199.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:162,209:0.56:371
chr12	124829234	rs1263992	C	T	10076.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	124829255	rs1244085	A	G	12380.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr12	124832474	rs1244065	G	A	6356.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr12	124832492	rs1244064	C	G	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr12	124832606	rs1244063	A	G	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	124838772	rs1244082	C	G	14533.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr12	124838897	rs1244081	A	G	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	124839317	rs2271140	C	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:84,48:0.36:132
chr12	124839553	rs150082761	C	T	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:143,95:0.40:238
chr12	124839867	rs870050	A	G	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	124848137	rs1794956	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	124856660	rs3741513	T	A	23965.77	.	AC=2;AF=1.00;AN=2;DB;DP=913;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,899:1.00:899
chr12	124857234	rs1702329	C	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	124859045	rs2695993	A	G	8620.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr12	124859135	rs11057606	G	A	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	124873074	rs118132240	G	A	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:96,125:0.57:221
chr12	124873079	rs7960906	T	G	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:139,118:0.46:257
chr12	124873411	.	TGAGG	T	1633	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=3;HapScore=1;MGOF=5;MMLQ=23;MQ=60.87;NF=1;NR=33;PP=1633;QD=48.2647058824;SC=CGTCCCACGGTGAGGGAGGGA;SbPval=0.43;Source=Platypus;TC=60;TCF=1;TCR=59;TR=34;WE=124873426;WS=124873401;set=Platypus	GT:AD:AF:DP	1/1:26,34:0.57:60
chr12	124885249	rs2293514	C	T	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:195,209:0.52:404
chr12	124885290	rs2293513	T	C	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:114,129:0.53:243
chr12	124887058	rs35831183	G	GGCT,GGCTGCT	6017.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.50;MQRankSum=0.753;QD=13.77;ReadPosRankSum=0.686;SOR=0.673;set=HC	GT:AD:AF:DP	1/2:62,221,154:0.51,0.35:437
chr12	124887093	.	C	CTGCTGT,CTGT	1275	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=18;MMLQ=28;MQ=59.91;NF=10,8;NR=104,104;PP=1275,689;QD=11.2280701754;SC=GCTGCTGCTGCTGTTGTTGCT;SbPval=0.62;Source=Platypus;TC=157;TCF=15;TCR=142;TR=114,112;WE=124887101;WS=124887083;set=Platypus	GT:AF:DP	0/1:0.73:157
chr12	124907154	rs115355225	G	A	3212.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:194,161:0.45:355
chr12	124915431	rs59053140	T	C	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr12	124922325	rs1702322	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr12	124934459	rs1147284	C	G	8871.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr12	124941543	rs906306	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr12	124950652	rs4765569	T	C	4733.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:222,235:0.51:457
chr12	124957627	rs10846679	C	T	5724.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:240,287:0.54:527
chr12	124968349	rs747443	T	C	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:128,115:0.47:243
chr12	124970875	rs2280534	T	C	3444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.82;ReadPosRankSum=0.368;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:96,87:0.48:183
chr12	124970879	rs2280533	C	A	3579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.17;ReadPosRankSum=-0.841;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:99,98:0.50:197
chr12	124970914	rs2280532	C	T	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:175,186:0.52:361
chr12	124979833	rs872224	C	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,47:0.38:124
chr12	124979851	rs75634720	A	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chr12	125263204	rs701104	A	C	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	125284748	rs5888	A	G	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:108,127:0.54:235
chr12	125396165	.	T	TAAAA	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.002;QD=11.79;ReadPosRankSum=1.728;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr12	125398039	rs1071862	G	C	5986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-0.703;QD=10.15;ReadPosRankSum=3.484;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:292,298:0.51:590
chr12	125400206	rs6488957	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	125432618	rs10846782	G	A	8038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=1.298;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:320,400:0.56:720
chr12	125434434	rs4562928	C	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr12	125434580	rs4447263	C	T	7756.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:285,370:0.56:655
chr12	125436850	rs4375522	G	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr12	125436897	rs4502074	A	G	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:106,114:0.52:220
chr12	125437019	rs4429156	T	C	7070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=0.900;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:358,367:0.51:725
chr12	125437160	rs74403469	G	A	2583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.657;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:103,126:0.55:229
chr12	125437236	rs6488960	A	G	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr12	125438414	rs12367953	A	G	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,53:0.56:95
chr12	125438516	rs4516060	T	C	8820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.71;ReadPosRankSum=-0.317;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:198,228:0.54:426
chr12	125438523	rs4258464	C	T	9020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.14;ReadPosRankSum=-0.048;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:209,239:0.53:448
chr12	125438549	rs4606565	A	G	6277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=-1.911;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:243,305:0.56:548
chr12	125438616	rs11831506	A	C	5930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.071;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:338,307:0.48:645
chr12	125441159	rs7973725	T	C	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:70,56:0.44:126
chr12	125441182	rs12298675	A	G	2884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=6.298;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.186;QD=11.77;ReadPosRankSum=0.093;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:144,101:0.41:245
chr12	125441347	rs12300199	T	C	4032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.910;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:209,208:0.50:417
chr12	125441359	rs10773127	T	C	10273.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr12	125441459	rs12304873	G	C	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:68,83:0.55:151
chr12	125441856	rs11057932	G	A	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,63:0.53:120
chr12	125444975	rs4765007	T	C	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	125445096	rs4765008	C	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr12	125445124	rs73229559	G	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.345;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr12	125448960	rs4076777	C	T	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:106,117:0.52:223
chr12	125449470	rs73229567	G	A	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:165,146:0.47:311
chr12	125450416	rs73229568	G	T	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:134,114:0.46:248
chr12	125453232	rs10773130	A	G	12958.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr12	125453235	rs11057940	C	A	12802.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr12	125456004	rs4542508	C	A	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	125456911	rs6488966	A	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	125457151	rs12320413	T	C	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	125465023	rs4072887	C	T	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-0.532;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr12	125466987	rs11057949	C	T	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr12	125467158	rs11558556	C	T	1502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=0.839;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:72,76:0.51:148
chr12	125467238	rs12424339	G	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr12	125478381	.	C	CCTG	2098.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=4.957;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.724;QD=13.99;ReadPosRankSum=0.406;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:89,61:0.41:150
chr12	125509502	rs7303493	C	T	13581.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr12	125561151	rs11549081	A	G	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr12	125562809	rs7303092	G	A	7940.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chr12	125562892	rs77481673	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr12	125562966	rs4765025	T	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr12	125587706	rs7138557	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr12	125591569	rs77193533	G	A	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:74,63:0.46:137
chr12	125603152	rs35814268	C	T	4906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=2.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=2.133;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:233,248:0.52:481
chr12	125614125	rs78804268	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr12	125619308	rs2291248	C	T	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:198,155:0.44:353
chr12	125621419	rs41473449	A	G	3596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.822;QD=6.62;ReadPosRankSum=-2.277;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:339,204:0.38:543
chr12	125810958	rs551601	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	125811056	rs550677	A	G	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.96;ReadPosRankSum=-0.397;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:36,73:0.67:109
chr12	125833964	rs7971264	C	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr12	125834095	rs1491893	C	A	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:160,203:0.56:363
chr12	125834395	rs3803155	T	C	20401.77	.	AC=2;AF=1.00;AN=2;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,782:1.00:782
chr12	126003934	rs964998	T	C	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-0.330;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:39,44:0.53:83
chr12	126068417	rs6489006	T	C	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	126932624	rs758564	G	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:87,73:0.46:160
chr12	126932764	rs758565	C	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	127229254	rs10847207	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr12	127229327	rs10773323	T	A	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:147,107:0.42:254
chr12	127229506	rs10847208	T	C	4011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.683;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:157,197:0.56:354
chr12	128108780	rs3803151	T	C	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	128899673	rs11059681	A	G	10848.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr12	129028401	rs61938604	G	C	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:130,106:0.45:236
chr12	129181625	rs902058	A	G	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.26;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	129181701	rs902059	A	G	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	129181810	rs885546	A	G	7286.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	129181834	rs902060	A	G	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr12	129189556	rs902061	T	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	129189591	rs4533104	A	G	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	129189941	rs12424159	G	A	16514.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:2,628:1.00:630
chr12	129190021	rs11059841	A	G	15444.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:4,584:0.99:588
chr12	129190474	rs3812792	G	A	18829.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr12	129278479	rs372516657	TCA	T	754.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr12	129278864	rs1059312	A	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,63:0.47:134
chr12	129283711	rs2291350	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr12	129293267	rs7311875	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.521;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr12	129293346	rs11059924	C	T	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:73,78:0.52:151
chr12	129298468	rs10688448	C	CAATA	477.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr12	129298727	.	A	AGACCTGAGCGCCGTATGATG	6090.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.118;ClippingRankSum=0.000;DP=463;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=63.32;MQRankSum=-4.320;QD=24.86;ReadPosRankSum=1.748;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:105,140:0.57:245
chr12	129298735	rs3741613	C	G	5287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.456;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=6.314;MLEAC=1;MLEAF=0.500;MQ=63.18;MQRankSum=9.139;QD=14.81;ReadPosRankSum=-5.126;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:216,141:0.39:357
chr12	129298775	.	C	CCACCGTATGATGGACCTGACCGCTGTATGATGGACCTGAG	11211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593;ClippingRankSum=0.000;DP=744;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=62.80;MQRankSum=-14.235;QD=16.59;ReadPosRankSum=-6.256;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:365,311:0.46:676
chr12	129298779	.	CGTATGATGGACCTGACCGCT	C	3753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;ClippingRankSum=0.000;DP=835;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=61.69;MQRankSum=15.663;QD=7.03;ReadPosRankSum=13.287;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:393,141:0.26:534
chr12	129298819	.	C	CGTATGATGGACCTGACCGCTGTATGATGGACCTGACCGCT	5060.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DP=722;ExcessHet=3.0103;FS=4.284;MLEAC=1;MLEAF=0.500;MQ=62.27;MQRankSum=-14.074;QD=9.66;ReadPosRankSum=-7.729;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:327,197:0.38:524
chr12	129298848	rs3741615	G	A	6246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=62.70;MQRankSum=16.323;QD=12.59;ReadPosRankSum=-2.274;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:316,180:0.36:496
chr12	129299385	rs10847697	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:92,90:0.49:182
chr12	129299446	rs33990080	A	G	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:102,99:0.49:201
chr12	129299675	rs2306683	C	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,37:0.41:91
chr12	129338293	rs10847702	A	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr12	129373073	rs7300146	A	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr12	129373100	rs12309809	G	A	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr12	129399352	rs11610307	G	A	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr12	129410738	.	CAATAAT	C,CAAT	1723.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=54;set=Intersection	GT:AF:DP	1/2:0.46,0.52:48
chr12	129410789	rs12425716	G	A	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr12	129559557	rs10773594	C	T	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	129563020	rs2002553	G	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr12	129566284	rs34663182	AT	A	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.995;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.511;QD=2.79;ReadPosRankSum=-0.327;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:115,80:0.41:195
chr12	130015535	rs71082733	G	GA,GAAAAA	2223.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.966;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.623;QD=14.07;ReadPosRankSum=2.151;SOR=1.111;set=HC	GT:AD:AF:DP	1/2:36,62,60:0.39,0.38:158
chr12	130521184	rs611963	G	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=40.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	130521207	rs622000	C	T	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.52;QD=39.60;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	130521234	rs34472041	C	CAA,CAAA	1417.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.92;QD=32.97;SOR=1.483;set=HC	GT:AD:AF:DP	1/2:0,14,29:0.33,0.67:43
chr12	130521306	rs600949	G	C	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	130827271	rs11060834	G	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr12	130830906	rs11060836	C	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:66,66:0.50:132
chr12	130832492	rs55887533	G	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.796;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=0.020;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr12	130832597	rs55881231	T	C	3232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-1.155;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:189,173:0.48:362
chr12	130834602	rs3736333	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr12	130838987	rs2173082	C	T	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:52,92:0.64:144
chr12	130839165	rs10848087	G	A	2865.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:145,145:0.50:290
chr12	130839645	rs1874521	A	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	130847389	rs2242363	A	G	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	130883554	rs79117967	CT	C	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-1.291;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:128,52:0.29:180
chr12	130884347	rs756186	A	G	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-0.398;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:56,43:0.43:99
chr12	130892163	rs7310840	G	A	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr12	130916685	rs7966010	T	C	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	130922870	rs2292665	G	A	4477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.337;ClippingRankSum=0.000;DB;DP=922;ExcessHet=3.0103;FS=49.862;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.552;QD=5.19;ReadPosRankSum=-0.070;SOR=3.000;set=HC	GT:AD:AF:DP	0/1:590,272:0.32:862
chr12	130922880	.	A	ACC	4289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.972;ClippingRankSum=0.000;DP=992;ExcessHet=3.0103;FS=56.831;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.697;QD=5.00;ReadPosRankSum=2.039;SOR=4.186;set=HC	GT:AD:AF:DP	0/1:655,203:0.24:858
chr12	130922884	rs201205931	T	C	9311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.509;ClippingRankSum=0.000;DB;DP=1028;ExcessHet=3.0103;FS=41.756;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.635;QD=9.66;ReadPosRankSum=-1.370;SOR=2.741;set=HC	GT:AD:AF:DP	0/1:673,291:0.30:964
chr12	130923089	rs2292666	C	G	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:89,109:0.55:198
chr12	130929546	rs10848102	C	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr12	130929599	rs7952756	A	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:71,51:0.42:122
chr12	130935710	rs2398519	C	G	8080.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr12	130941150	rs2277361	G	C	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:235,185:0.44:420
chr12	130941338	rs1356081	G	A	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:91,86:0.49:177
chr12	131276448	rs4759786	G	T	6660.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.691;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.04;ReadPosRankSum=-0.677;SOR=0.232;set=HC	GT:AD:AF:DP	1/1:1,265:1.00:266
chr12	131280714	rs10848205	T	C	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:119,92:0.44:211
chr12	131280752	rs34749116	G	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr12	131285663	rs1881060	T	C	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	131296880	rs7961690	G	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr12	131296908	rs9668291	C	G	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.973;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:33,31:0.48:64
chr12	131306314	rs17564	C	G	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr12	131311629	rs112850087	G	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.455;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr12	131323708	rs10848214	T	G	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	131356520	rs141803119	G	A	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:45,73:0.62:118
chr12	131356645	rs11546491	G	A	4733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=1.881;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:315,250:0.44:565
chr12	131356731	rs116897340	T	C	1653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=1.024;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:81,96:0.54:177
chr12	131359298	rs7958223	C	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr12	131360352	rs112060445	G	C	8975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.10;ReadPosRankSum=1.400;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:257,239:0.48:496
chr12	131360360	rs73461299	G	T	8807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.62;ReadPosRankSum=0.474;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:246,227:0.48:473
chr12	131439239	rs10848261	T	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr12	131453378	rs7309920	T	C	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	131453461	rs80224014	G	T	2860.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:204,151:0.43:355
chr12	131466562	rs4759534	T	C	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	131471608	rs1547577	T	C	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	131476665	rs55788836	CAAA	C,CA	786.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.229;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.22;ReadPosRankSum=-1.273;SOR=1.829;set=HC	GT:AD:AF:DP	1/2:1,15,14:0.50,0.47:30
chr12	131485014	rs4759821	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	131485025	rs4759822	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr12	131488565	.	A	AT	49.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=62.96;MQRankSum=4.011;QD=2.07;ReadPosRankSum=1.642;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr12	131488566	rs10773836	C	T	155.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.530;MLEAC=1;MLEAF=0.500;MQ=62.75;MQRankSum=-2.365;QD=5.99;ReadPosRankSum=-0.976;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr12	131488858	rs12311722	T	C	5090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.084;QD=8.70;ReadPosRankSum=0.360;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:315,270:0.46:585
chr12	131490413	rs7978321	A	G	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:101,72:0.42:173
chr12	131498946	rs1212936	C	T	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	131498995	rs1195923	G	A	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	131555329	rs10744491	C	A	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:103,99:0.49:202
chr12	131590404	rs4759544	G	A	4466.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:243,230:0.49:473
chr12	131593506	rs11061329	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,46:0.52:89
chr12	131620578	rs884522	C	T	2133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-0.975;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:182,118:0.39:300
chr12	131620588	rs868158	A	G	8330.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.65;ReadPosRankSum=-0.928;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:2,336:0.99:338
chr12	131620738	rs2280683	A	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:88,55:0.38:143
chr12	131622735	rs7302341	T	C	20681.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:2,817:1.00:819
chr12	131622833	rs2277337	T	C	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	131687287	rs7486559	G	C	17592.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.72;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,684:1.00:684
chr12	132237750	rs1051219	C	T	10626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=1200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-1.180;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:634,542:0.46:1176
chr12	132237848	rs1982528	T	C	39673.77	.	AC=2;AF=1.00;AN=2;DB;DP=1533;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,1510:1.00:1510
chr12	132239754	rs61942900	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr12	132240937	rs3217666	C	CAT	2828.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	132241229	rs7136191	A	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	132250712	rs1051233	G	C	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:98,92:0.48:190
chr12	132262911	rs75324057	A	T	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:114,97:0.46:211
chr12	132269780	rs147508108	AACTG	A	7570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.018;QD=18.69;ReadPosRankSum=2.229;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:207,198:0.49:405
chr12	132269830	rs66665803	G	GA	3969.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	132271113	rs7136643	T	C	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	132283582	rs117785622	G	T	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:158,98:0.38:256
chr12	132283801	rs77439309	G	C	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr12	132313098	.	G	GGCTGCCGCT	1176.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.61;QD=45.26;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	132323082	rs7971187	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.299;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.108;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr12	132323089	rs7965611	C	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.43;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	132323294	rs4964884	T	C	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=-0.898;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:41,40:0.49:81
chr12	132325239	rs6598163	G	A	15727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=1449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-2.184;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:656,774:0.54:1430
chr12	132326051	rs4964929	C	T	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr12	132335592	rs11835665	G	A	6870.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:331,348:0.51:679
chr12	132395052	rs7295593	G	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	132396343	rs11615995	C	T	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	132396603	rs11616018	C	T	10615.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr12	132398255	rs68126752	AC	A	125.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.031;QD=0.44;ReadPosRankSum=1.992;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:227,58:0.20:285
chr12	132398256	rs4964880	C	A	3660.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.574;QD=12.84;ReadPosRankSum=-1.778;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:89,196:0.69:285
chr12	132399065	rs12303764	T	G	3612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=1.406;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:145,181:0.56:326
chr12	132402020	rs4964918	T	C	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=-0.683;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:149,112:0.43:261
chr12	132403161	rs11609348	A	G	17929.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,678:1.00:678
chr12	132403291	rs116896670	C	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-1.864;QD=1.77;ReadPosRankSum=-0.300;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr12	132403323	rs113517126	C	T	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=1.707;QD=4.18;ReadPosRankSum=-0.821;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr12	132404212	rs7299195	A	G	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	132406275	rs7311029	A	C	6134.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	132417451	rs113696185	G	A	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-1.496;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr12	132427909	rs7961398	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	132472528	rs74470510	CT	C	123.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.624;MLEAC=1;MLEAF=0.500;MQ=61.10;MQRankSum=1.648;QD=4.27;ReadPosRankSum=0.085;SOR=1.152;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr12	132514454	rs79985228	C	T	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:143,136:0.49:279
chr12	132547093	.	A	ACAG	4669.73	.	AC=1;AF=0.500;AN=2;DP=924;set=Intersection	GT:AD:AF:DP	0/1:392,272:0.41:664
chr12	132547132	.	G	GCAA	1349	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=29;NF=12;NR=99;SC=AGCAGCAGCAGCAGCAACAGC;SbPval=0.68;Source=Platypus;TC=290;TCF=36;TCR=254;TR=111;WS=132547122;set=Platypus	GT:AD:AF:DP	1/0:179,111:0.38:290
chr12	132562126	rs73164912	G	A	5636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-0.569;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:224,269:0.55:493
chr12	132626668	rs1133690	T	C	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:63,85:0.57:148
chr12	132630822	rs10794454	C	T	5662.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:225,290:0.56:515
chr12	132633435	.	ACCTCGGTGAGTGCCGCCGCCTCGCTCACACCACACCCCTAATCC	A	2916.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DP=432;ExcessHet=3.0103;FS=1.635;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-0.211;QD=12.26;ReadPosRankSum=-3.639;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:152,86:0.36:238
chr12	132635521	rs7397057	T	C	4096.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:187,207:0.53:394
chr12	132635989	rs11246947	A	G	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:217,211:0.49:428
chr12	132636400	rs11246948	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr12	132682481	rs12308155	T	G	21307.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr12	132682484	rs12306514	A	G	21186.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,467:1.00:467
chr12	132683632	rs4074045	A	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	132683862	rs6598205	G	A	3217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=1.396;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:108,159:0.60:267
chr12	132683961	rs6598206	T	C	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	132685566	rs7953158	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr12	132685826	rs11246988	T	C	3791.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:280,207:0.43:487
chr12	132685837	rs10794457	A	G	14999.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr12	132685899	rs11246989	G	C	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:97,57:0.37:154
chr12	132685940	rs61329617	A	AGGCCCCATCC	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=0.257;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr12	132685953	rs59310537	T	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr12	132685958	rs35906641	A	ACC	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr12	132688137	rs7486927	A	G	6379.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:412,346:0.46:758
chr12	132688279	rs10902510	A	G	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	132811399	rs74514445	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr12	132811498	rs368985675	TC	T	4114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=0.417;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:170,138:0.45:308
chr12	132811652	rs73166880	TG	CT	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr12	132811670	rs111837594	A	G	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr12	132824197	.	ATGGCCGCACTCGCCCTCACCCCGTCCCCGGATGCCG	A	6152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.087;ClippingRankSum=0.000;DP=1925;ExcessHet=3.0103;FS=4.321;MLEAC=1;MLEAF=0.500;MQ=61.04;MQRankSum=20.106;QD=5.68;ReadPosRankSum=0.896;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:709,374:0.35:1083
chr12	132824450	rs73166888	G	T	22695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=2236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=0.788;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:1058,1140:0.52:2198
chr12	132839265	rs28431148	A	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.980;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.722;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr12	132852957	rs28561974	C	A	12101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=1408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.152;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:762,635:0.45:1397
chr12	132862868	rs78370891	G	A	6757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-2.090;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:312,341:0.52:653
chr12	132911861	rs28672358	G	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	132911948	rs28722154	T	C	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	132912031	rs28420217	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	132912181	rs71453143	CGTGT	C	1559.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,63:0.97:65
chr12	133031898	rs10870487	A	G	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	133032047	.	T	TGTGTGTGCATGTTGAC	13424.73	.	AC=2;AF=1.00;AN=2;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.85;QD=44.60;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr12	133032110	rs9706362	T	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr12	133032132	rs113386371	C	CGT	1605.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	133067343	.	A	G	567.77	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.64;QD=24.69;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	133067473	rs28435470	G	A	1878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.963;QD=8.86;ReadPosRankSum=1.075;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:111,101:0.48:212
chr12	133084973	rs61952075	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.98;ReadPosRankSum=-0.922;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr12	133104461	rs4883566	A	G	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:109,74:0.40:183
chr12	133146416	rs7312710	A	G	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:46,94:0.67:140
chr12	133146457	rs3751316	G	A	4039.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:125,194:0.61:319
chr12	133151254	rs144726929	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr12	133153281	rs10870473	A	T	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	133158632	rs3751304	C	T	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	133159004	rs7308900	C	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.948;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-1.357;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr12	133159733	rs11550079	C	T	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:61,80:0.57:141
chr12	133159846	rs56171012	C	T	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=2.128;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:47,45:0.49:92
chr12	133179816	rs4883635	C	T	4325.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:205,214:0.51:419
chr12	133181038	rs62826760	CG	C	4719.73	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:148,145:0.49:293
chr12	133181186	rs114203351	C	T	5616.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	0/1:432,310:0.42:742
chr12	133181399	rs11146963	T	C	22993.77	.	AC=2;AF=1.00;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	1/1:0,884:1.00:884
chr12	133181425	rs11146964	A	G	22687.77	.	AC=2;AF=1.00;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	1/1:1,878:1.00:879
chr12	133181440	rs57223080	G	A	8070.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:429,415:0.49:844
chr12	133182783	.	CCAG	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.577;QD=0.12;ReadPosRankSum=0.690;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:417,34:0.08:451
chr12	133182818	rs12819734	G	A	4606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=2.698;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.745;QD=11.97;ReadPosRankSum=-1.027;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:166,219:0.57:385
chr12	133182920	rs77860070	C	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr12	133195579	rs200710959	CGCGGGGCGCGGGGT	C	3552.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:7,150:0.96:157
chr12	133195625	rs11146976	G	A	7008.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.22;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	133196596	rs7964634	T	C	8563.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr12	133196733	rs7955816	C	T	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr12	133196773	rs7964872	T	G	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	133197018	rs6560891	G	A	14923.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr12	133198021	rs4883632	C	T	16726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DB;DP=1711;ExcessHet=3.0103;FS=1.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=1.239;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:854,840:0.50:1694
chr12	133198589	rs55716322	C	T	4396.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:265,219:0.45:484
chr12	133201440	.	GAGGAGGCCA	G	2976	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=1;MGOF=14;MMLQ=24;MQ=59.95;NF=12;NR=48;PP=2976;QD=20;SC=TCCACTCAGAGAGGAGGCCAA;SbPval=0.31;Source=Platypus;TC=158;TCF=26;TCR=132;TR=60;WE=133201460;WS=133201430;set=Platypus	GT:AD:AF:DP	1/0:98,60:0.38:158
chr12	133201441	rs199947622	AGGAG	A	7562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=-0.762;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:281,209:0.43:490
chr12	133201447	rs375041812	CCAAGG	C	7562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.872;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:273,210:0.43:483
chr12	133201452	.	G	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=26;MQ=60.0;NF=56;NR=49;PP=2962;QD=20;SC=GGAGGCCAAGGAGGCCAGGCT;SbPval=0.66;Source=Platypus;TC=254;TCF=130;TCR=124;TR=105;WE=133201460;WS=133201430;set=Platypus	GT:AD:AF:DP	1/0:149,105:0.41:254
chr12	133201947	rs4883544	T	C	19158.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	1/1:2,737:1.00:739
chr12	133202004	rs4883543	C	T	7826.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:303,375:0.55:678
chr12	133202215	rs5745075	G	A	3858.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:151,185:0.55:336
chr12	133202428	rs5745073	G	A	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr12	133208886	rs5745023	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	133208979	rs5745022	T	C	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	133210985	rs5745005	C	T	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	133212382	rs5744993	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr12	133212582	rs5744990	G	A	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.892;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:164,115:0.41:279
chr12	133212692	rs4883625	T	C	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	133212737	rs4883624	C	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr12	133214517	rs5744975	G	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.456;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-1.378;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr12	133214522	rs5744974	G	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.86;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	133214768	rs5744970	A	G	9693.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr12	133218724	rs5744951	C	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr12	133219831	rs5744944	T	C	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:151,149:0.50:300
chr12	133219949	rs5744942	G	A	5422.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:320,266:0.45:586
chr12	133220321	rs4883614	T	A	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	133220652	rs5744932	A	AG	3979.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	133220670	rs10870483	G	A	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	133225446	rs4883538	G	T	4645.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:162,227:0.58:389
chr12	133226159	rs4883613	T	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	133226196	rs4883537	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr12	133233705	rs5744889	T	C	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	133234020	rs5744886	A	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:53,57:0.52:110
chr12	133234389	rs5744884	CAT	C	1193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.25;ReadPosRankSum=3.010;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:30,32:0.52:62
chr12	133234741	rs10649524	C	CGTGT	31.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,2:0.29:7
chr12	133236000	rs5744857	C	T	7066.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:321,351:0.52:672
chr12	133237753	rs369732588	GA	G	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=2.415;QD=5.29;ReadPosRankSum=-0.780;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:45,48:0.52:93
chr12	133238076	rs5744844	T	C	2914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=1.751;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:100,145:0.59:245
chr12	133240782	rs4883592	A	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr12	133242140	rs4883586	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr12	133242149	rs5744820	A	G	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr12	133245149	rs5744798	A	G	6363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=2.107;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:311,324:0.51:635
chr12	133249139	rs5744780	T	A	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:61,100:0.62:161
chr12	133250118	rs4883555	C	T	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:266,235:0.47:501
chr12	133251939	rs5744761	G	A	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:175,144:0.45:319
chr12	133252556	rs4883545	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr12	133252796	rs4077170	C	G	1718.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:137,96:0.41:233
chr12	133253310	rs5744757	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr12	133254083	rs5744750	T	C	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:225,187:0.45:412
chr12	133263743	rs111877885	A	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	133263825	rs2075784	G	A	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-0.739;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:79,61:0.44:140
chr12	133264332	rs11538534	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-1.176;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr12	133272380	rs10781627	G	C	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-0.591;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr12	133277983	rs7958567	T	C	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	133279104	rs73485183	A	C	3979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=-1.973;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:347,228:0.40:575
chr12	133281462	rs10007	G	A	2249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-0.829;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:94,110:0.54:204
chr12	133287721	rs7973452	A	G	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=0.080;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:27,43:0.61:70
chr12	133293921	.	GGTGTTTGAGGGTGGAGGAGGGC	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=1.344;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr12	133294371	rs117147264	A	G	3205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=2.212;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:260,176:0.40:436
chr12	133297103	rs10781631	T	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr12	133297182	rs10870498	A	G	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.628;QD=7.87;ReadPosRankSum=0.131;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:125,94:0.43:219
chr12	133304146	rs10437912	C	T	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.59;ReadPosRankSum=-1.336;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:23,38:0.62:61
chr12	133304149	rs10437913	G	C	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=-0.240;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:23,31:0.57:54
chr12	133304604	rs11147024	C	T	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:122,107:0.47:229
chr12	133304891	rs10870499	T	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr12	133306920	.	CCCATCCATGACCAACTGCCGTGACCCCAGCAACAGCAACTCTTATACCCAAAACCTCCCCACT	C	1437.73	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr12	133310659	rs372085055	TA	T	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.321;QD=1.26;ReadPosRankSum=0.326;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:89,35:0.28:124
chr12	133311888	rs10781636	C	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:75,53:0.41:128
chr12	133311944	rs10747081	T	C	2925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-0.229;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:148,153:0.51:301
chr12	133312191	rs10781637	T	C	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr12	133313372	rs7313956	C	A	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:108,87:0.45:195
chr12	133324385	rs74469630	TAAAG	T	2789.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:150,80:0.35:230
chr12	133331459	rs7968520	G	C	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:199,146:0.42:345
chr12	133338428	.	G	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-0.911;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	133349539	.	T	C	253.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr12	133349620	rs3741483	C	G	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:110,113:0.51:223
chr12	133349893	rs3741484	A	G	468.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	133353168	.	C	T	316	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=1;HapScore=2;MGOF=22;MMLQ=27;MQ=54.77;NF=12;NR=4;PP=316;QD=21.9232007842;SC=GCCCCTCCAGCTCCTTCCTCC;SbPval=0.58;Source=Platypus;TC=16;TCF=12;TCR=4;TR=16;WE=133353176;WS=133353166;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	133353190	.	G	A	250	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=5;HapScore=2;MGOF=11;MMLQ=27;MQ=58.22;NF=13;NR=3;PP=250;QD=17.7982007842;SC=TGCTGCTCCCGCCTGTGCCCA;SbPval=0.76;Source=Platypus;TC=41;TCF=31;TCR=10;TR=16;WE=133353198;WS=133353180;set=Platypus	GT:AD:AF:DP	1/0:25,16:0.39:41
chr12	133353539	rs61951323	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,59:0.48:122
chr12	133353682	rs61951347	G	A	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:219,151:0.41:370
chr12	133354203	rs12371815	C	A	3153.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:119,147:0.55:266
chr12	133354470	rs900444	T	C	5052.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:217,258:0.54:475
chr12	133360530	rs11147073	T	C	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	133360964	rs1009320	G	A	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	133363264	rs2242294	C	T	7047.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:280,344:0.55:624
chr12	133363271	.	A	G	5467.77	.	AC=1;AF=0.500;AN=2;DP=639;set=Intersection	GT:AD:AF:DP	0/1:345,286:0.45:631
chr12	133363376	rs7976379	G	T	3228.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:166,160:0.49:326
chr12	133365497	rs968522	A	C	12659.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:1,477:1.00:478
chr12	133365920	rs11147076	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	133367788	rs118137428	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=0.707;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr12	133372395	rs4758905	A	C	9188.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr12	133378244	rs149456851	AC	A	2683.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:15,150:0.91:165
chr12	133378440	rs2291258	C	T	14662.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr12	133383923	rs10781653	T	C	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	133385188	rs3741488	A	T	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	133398439	.	CAA	C	1019.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=5.51;ReadPosRankSum=1.801;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:116,69:0.37:185
chr12	133417982	rs375411000	T	TAA	375.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr12	133419418	rs2306544	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr12	133419808	rs4758950	G	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr12	133420743	rs143440255	CCCAGCAACA	C	2772.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:63,72:0.53:135
chr12	133423662	rs2306536	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr12	133423866	rs10747087	G	A	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	133423884	rs2306538	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr12	133432992	rs2306539	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr12	133433173	rs2062163	T	C	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr12	133433237	rs3816759	C	T	1842.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:115,96:0.45:211
chr12	133433240	rs11147110	C	T	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:94,113:0.55:207
chr12	133433300	rs11147111	C	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:42,67:0.61:109
chr12	133435595	rs4758955	C	T	1819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.392;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:99,90:0.48:189
chr12	133437981	rs12578891	A	C	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:92,67:0.42:159
chr12	133438277	rs2306543	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr12	133439002	rs9943856	G	A	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.167;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.149;QD=7.25;ReadPosRankSum=0.505;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:87,56:0.39:143
chr12	133439115	rs9943858	G	A	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	133447224	rs11147126	T	C	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:154,138:0.47:292
chr12	133454294	rs11147137	C	T	3653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.389;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.952;QD=10.59;ReadPosRankSum=-0.595;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:163,182:0.53:345
chr12	133454354	rs149820641	TA	T	1275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.000;QD=7.50;ReadPosRankSum=-0.600;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:84,86:0.51:170
chr12	133463775	rs145527630	C	T	5828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=2.177;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:175,268:0.60:443
chr12	133463969	rs113492159	G	A	4274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.345;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-2.008;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:230,218:0.49:448
chr12	133501827	rs3052642	CTT	C	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr12	133670171	rs201077790	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=46.66;MQRankSum=-2.074;QD=10.55;ReadPosRankSum=0.580;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr12	133682655	rs710945	A	G	3275.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:264,176:0.40:440
chr12	133683261	rs905226	T	C	2626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=3.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=1.362;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:188,146:0.44:334
chr12	133683280	rs905225	A	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:105,86:0.45:191
chr12	133696743	rs144074942	G	GAAC	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr12	133696785	rs11147239	C	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr12	133697130	rs2173970	CA	GG	7462.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;JOINED;set=Intersection	GT:AD:AF:DP	0/1:212,196:0.48:408
chr12	133698537	rs11615248	G	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr12	133721452	rs11613951	T	C	1595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=1.960;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:119,87:0.42:206
chr12	133768553	rs61960670	A	T	2432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-0.999;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:197,135:0.41:332
chr12	133780309	rs36127550	G	T	5303.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:183,257:0.58:440
chr12	133780851	rs62644541	G	C	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:260,181:0.41:441
chr12	133781163	rs36174733	A	G	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr12	133787329	rs138369699	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	133795418	rs142613020	C	G	9557.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr12	133795885	rs144454089	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr12	133795960	rs36140725	A	G	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:91,94:0.51:185
chr12	133796033	rs36130280	C	T	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	133797649	rs147515371	T	G	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr12	133803093	rs137878698	T	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr12	133803551	rs36146434	G	C	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:87,87:0.50:174
chr12	133808129	rs147259575	C	T	4807.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:322,254:0.44:576
chr12	133810703	rs141475940	G	C	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:118,122:0.51:240
chr12	133810935	rs182378009	C	T	3389.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:191,176:0.48:367
chr13	19600475	rs9511168	C	A	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.89;QD=25.24;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr13	19601129	rs35887366	TA	T	3138.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	19601182	rs2039524	C	T	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	19606506	rs12865916	C	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	19748344	rs36216906	C	T	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.233;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	19751854	rs36215763	A	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	19755690	rs36214434	A	G	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr13	19755726	rs17076891	G	C	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr13	19756002	rs3751422	G	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	19756026	rs783595	C	G	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	19759404	rs142818236	CT	C	4104.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=33.92;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	19761359	rs77809485	T	G	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr13	19761398	rs79239276	G	A	8997.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr13	19761432	rs74996029	T	C	8681.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr13	19761496	rs17790638	A	G	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	19775873	rs200815536	C	CA	13663.73	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.15;QD=37.13;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr13	19776012	rs376392033	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.87;QD=28.98;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	19778557	rs61946465	T	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	19778703	.	A	T	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.238;MLEAC=1;MLEAF=0.500;MQ=45.48;MQRankSum=0.852;QD=35.96;ReadPosRankSum=-0.420;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,46:0.92:50
chr13	19778705	.	C	A	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=45.34;MQRankSum=0.795;QD=38.25;ReadPosRankSum=-0.522;SOR=1.775;set=HC	GT:AD:AF:DP	0/1:4,43:0.91:47
chr13	19778748	.	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=47.70;MQRankSum=-2.655;QD=10.86;ReadPosRankSum=-2.655;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr13	19801344	rs77928908	GA	G	748.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	19931495	rs113883205	T	C	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.32;QD=31.35;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	19931579	rs61956074	G	A	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.27;QD=25.36;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr13	19931686	rs17080489	T	C	4870.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=24.85;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr13	19931710	rs146638959	C	A	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	19933448	rs61956080	G	A	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr13	19933518	rs61956081	T	C	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	19941233	rs3002090	C	A	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	19943770	rs4112696	A	G	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=25.18;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	19949158	rs139492586	T	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.75;QD=25.92;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	19949338	rs149139495	A	G	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	19949386	rs118146542	T	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	19962045	rs9554181	G	A	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	20000630	rs2497218	T	C	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr13	20000702	rs4408395	G	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	20004798	rs2497068	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	20025375	rs4554999	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	20038584	rs7339103	A	G	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	20039289	rs2497079	A	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	20041323	rs2497251	G	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.50;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	20041563	rs2492391	C	T	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	20066994	rs78472618	T	C	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.007;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=4.726;MLEAC=1;MLEAF=0.500;MQ=50.95;MQRankSum=-7.600;QD=8.02;ReadPosRankSum=-4.386;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:120,35:0.23:155
chr13	20067011	rs76437836	A	C	1620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.40;MQRankSum=-8.211;QD=7.91;ReadPosRankSum=-3.660;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:142,63:0.31:205
chr13	20067081	rs76668072	A	G	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.253;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=7.129;MLEAC=1;MLEAF=0.500;MQ=48.73;MQRankSum=-6.145;QD=8.15;ReadPosRankSum=2.749;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:84,71:0.46:155
chr13	20067140	rs76824079	T	G	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.244;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.643;MLEAC=1;MLEAF=0.500;MQ=54.79;MQRankSum=-4.997;QD=11.70;ReadPosRankSum=-2.090;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr13	20067145	rs112509877	T	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.676;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-4.960;QD=13.02;ReadPosRankSum=-2.861;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr13	20067148	rs77396540	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-4.298;QD=5.07;ReadPosRankSum=-0.795;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr13	20224138	rs9579581	G	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	20224387	rs9578176	A	G	11506.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr13	20233816	rs56032248	A	T	3243.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	20235992	rs9579617	T	C	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr13	20236085	rs60692832	C	CT	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.738;QD=8.51;ReadPosRankSum=-1.250;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr13	20244960	rs35636598	C	CT	318.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.75;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	20247171	rs4769866	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	20247238	.	G	GT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.351;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr13	20279839	.	T	C	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=7.596;MLEAC=1;MLEAF=0.500;MQ=47.11;MQRankSum=-5.706;QD=4.17;ReadPosRankSum=-2.246;SOR=1.509;set=HC	GT:AD:AF:DP	0/1:88,30:0.25:118
chr13	20279879	rs200516102	T	C	2068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=47.90;MQRankSum=-8.371;QD=6.10;ReadPosRankSum=-0.595;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:214,125:0.37:339
chr13	20356998	rs17086752	A	G	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	20398669	rs9508907	T	C	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	20398742	rs9508908	C	T	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	20411701	rs7988277	C	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	20413021	rs41292167	T	C	8818.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr13	20413151	rs61563111	C	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	20425429	rs60968061	CTTT	C	6467.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	20425911	rs9579717	C	A	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	20425948	rs9579718	T	C	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr13	20601004	rs7981272	T	C	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	20608354	rs11272380	T	TTTTCTTGAGGTG	1073.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	20633470	rs11432433	T	TA	119.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	20657188	rs9509028	T	G	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	20716411	rs11617415	C	T	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	20716533	rs968566	G	T	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr13	20762956	rs3751385	A	G	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	20978504	rs4638418	C	T	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	20978664	rs3737036	T	C	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	21005941	rs4578496	A	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	21005987	rs4614565	C	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	21006475	rs7983215	T	C	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr13	21013653	rs56087130	CA	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.573;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr13	21086558	rs7987204	T	C	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	21170193	rs149283826	G	GTAAAA	411.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	21173826	rs2497475	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	21189941	rs2442455	G	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	21205124	rs35290473	TG	T	12429.73	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr13	21205140	rs1329519	A	T	8328.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.09;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr13	21205192	rs9509307	G	A	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr13	21358061	rs17318617	A	G	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	21361513	rs4146442	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	21416945	rs2762995	G	A	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	21417902	.	C	T	660.77	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	21429874	rs61737207	T	C	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	21442945	rs9509410	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	21476997	rs7326480	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	21555544	rs870846	CT	GA	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.20;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	21555554	rs870848	G	A	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.04;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	21562482	rs10658032	C	CGGGGCG	2296.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:3,56:0.95:59
chr13	21562785	rs369167901	C	T	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	21562832	rs2770928	C	T	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr13	21562948	rs558614	G	A	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr13	21620085	rs7317471	T	C	8319.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:1,319:1.00:320
chr13	21729064	rs9552370	A	G	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	21729952	rs11446085	T	TA	602.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.808;QD=12.82;ReadPosRankSum=-1.269;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:10,37:0.79:47
chr13	21732094	rs4770121	C	T	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	21736133	rs4561294	C	T	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	21746453	rs2026600	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	21751005	rs9550717	G	C	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	22067681	rs3818314	T	C	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	22088733	rs2012875	C	T	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	22096843	rs1200028	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	22178307	rs2248433	GG	CA	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	22255167	rs3818460	C	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	22255301	rs2274296	C	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr13	22275394	rs9509841	A	G	9407.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr13	22275583	rs9509842	G	A	9489.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr13	23238308	rs56308927	CT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-0.849;QD=4.27;ReadPosRankSum=0.717;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr13	23251016	rs35856253	CT	C	1282.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	23253313	rs9506904	T	C	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr13	23253471	rs372295624	G	A	12525.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.248;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.20;ReadPosRankSum=1.485;SOR=0.318;set=HC	GT:AD:AF:DP	1/1:1,496:1.00:497
chr13	23279254	rs314874	G	A	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr13	23279279	rs314873	T	C	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr13	23808732	.	CT	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=1.394;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr13	23894744	rs1536725	T	G	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.82;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	23894746	rs1536726	T	G	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	23894748	rs1536727	T	G	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	23894750	rs1536728	T	G	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	23894752	rs1536729	T	G	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	23898454	rs9510700	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	23898509	rs1800353	T	C	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr13	23898664	rs1800354	A	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,54:0.96:56
chr13	23907677	rs2737701	C	T	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr13	23908034	rs2737700	A	G	7924.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr13	23985391	rs17078720	T	C	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr13	24242801	rs7329483	A	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	24243200	rs3751363	T	C	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	24243204	rs3751362	G	A	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	24410278	rs7982516	G	A	5307.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr13	24411772	rs7333040	T	C	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	24436230	rs1886972	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	24465743	rs3864971	A	G	9898.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.80;QD=26.05;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr13	24466302	.	A	G	72	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=26;MQ=52.05;NF=1;NR=6;PP=72;QD=15.2530303639;SC=ACAAAGTAGTACACAGGTTCA;SbPval=0.88;Source=Platypus;TC=22;TCF=6;TCR=16;TR=7;WE=24466310;WS=24466292;set=Platypus	GT:AD:AF:DP	0/1:15,7:0.32:22
chr13	24798120	rs1220547	T	C	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr13	24826051	rs2793491	C	T	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr13	24845130	rs376881335	CCT	C	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=6.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.039;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr13	24845159	rs10654469	A	ACT	526.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr13	24853011	rs9580911	T	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=3.482;QD=29.98;ReadPosRankSum=2.343;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr13	24853015	rs9580912	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=3.482;QD=29.98;ReadPosRankSum=1.235;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr13	24860240	rs9507300	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	24865029	rs41287032	G	A	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr13	24869025	rs7993660	A	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	24869048	rs9553233	T	C	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	24876752	rs33990382	T	C	7381.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr13	24877151	rs9580929	A	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	24877179	rs9578699	G	A	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	24877308	rs9578700	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	24877442	rs9580930	G	A	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	24877550	rs9580931	G	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	24890157	rs1974332	C	T	7810.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=25.36;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr13	24890228	rs4275724	A	C	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.75;QD=27.46;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	24895102	rs4476017	G	A	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.42;QD=26.58;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	24895684	rs2862239	A	G	15292.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr13	25008588	rs1372085	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	25008630	rs1822135	A	G	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	25008903	rs9318536	G	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.34;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	25009099	rs9511259	A	C	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	25016230	rs9511267	C	T	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	25016687	rs4770683	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	25020757	rs9511273	T	C	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	25020782	rs9318553	C	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	25020863	rs9318554	G	A	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	25020910	rs9507346	G	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	25021144	rs78060735	GTCT	G	3396.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	25021154	rs61947037	C	T	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	25021200	rs9318558	A	C	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	25021211	rs7333856	C	T	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	25021245	rs7334587	A	G	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	25027744	rs4770684	A	G	11859.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr13	25029218	rs2275660	C	T	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	25043029	rs4770694	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.77;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	25043033	rs4770695	C	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	25049812	rs8001930	T	C	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	25052261	rs4770696	C	T	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	25052420	rs17080653	T	A	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:16,103:0.87:119
chr13	25052423	rs200378131	G	A	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.269;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.884;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-10.157;QD=2.56;ReadPosRankSum=2.364;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:97,16:0.14:113
chr13	25052446	.	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=6.360;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-8.774;QD=4.76;ReadPosRankSum=1.144;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr13	25059023	rs4769362	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	25065008	rs1361577	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	25068620	rs2862906	G	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	25068934	rs4770700	G	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	25072200	rs1965154	T	C	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	25073399	rs34014909	G	GT	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-0.230;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr13	25075859	rs1539096	C	T	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr13	25280753	rs2289905	C	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	25283657	rs2289910	G	C	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	25283744	rs7318859	G	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	25338586	rs9578783	A	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	25355965	rs5802305	GT	G	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=1.503;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr13	25363776	rs6490979	C	T	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	25374707	rs45466293	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	25404743	rs4769382	T	C	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	25425723	rs2305369	T	A	1362.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.50;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	25428002	rs3783082	C	A	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr13	25428365	rs7987497	G	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	25448120	rs8001764	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	25457207	rs9318911	T	C	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	25457537	rs141987132	TA	T	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	25458232	rs34991318	AGTT	A	3249.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	25458650	rs1530876	G	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	25460428	rs9511502	A	G	7604.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr13	25466774	rs9318917	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	25466955	rs3742165	T	C	7000.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.050;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr13	25482092	rs2122883	T	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	25487103	rs35498994	T	C	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	25670753	.	T	C	108.77	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:70,12:0.15:82
chr13	25670767	rs79159999	A	G	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=11.185;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-7.940;QD=6.89;ReadPosRankSum=-1.194;SOR=1.999;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr13	25670776	rs78432860	C	T	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=10.263;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-7.224;QD=7.91;ReadPosRankSum=-0.936;SOR=1.844;set=HC	GT:AD:AF:DP	0/1:72,24:0.25:96
chr13	25670777	rs76472384	A	G	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.416;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=10.338;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-7.179;QD=8.00;ReadPosRankSum=-0.896;SOR=1.887;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr13	25670780	rs79494472	C	G	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.670;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=12.204;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-6.887;QD=8.49;ReadPosRankSum=-1.149;SOR=2.059;set=HC	GT:AD:AF:DP	0/1:71,26:0.27:97
chr13	25670797	rs75760907	C	G	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chr13	25670801	.	T	TG	1566.73	.	AC=1;AF=0.500;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:80,43:0.35:123
chr13	25670803	rs76858651	A	G	1563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=5.849;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-5.666;QD=12.22;ReadPosRankSum=-0.593;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:82,46:0.36:128
chr13	25670813	rs3002212	C	T	1984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-5.294;QD=12.25;ReadPosRankSum=-1.141;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:97,65:0.40:162
chr13	25670851	rs75475407	A	G	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:155,83:0.35:238
chr13	25670868	rs200859889	G	A	3103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-8.482;QD=12.08;ReadPosRankSum=3.903;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:171,86:0.33:257
chr13	25670873	rs77142265	A	G	3094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-8.618;QD=11.77;ReadPosRankSum=3.615;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:177,86:0.33:263
chr13	25670877	rs112107735	G	A	3118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-8.487;QD=11.68;ReadPosRankSum=2.642;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:178,89:0.33:267
chr13	25670907	rs76264750	C	A	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:194,74:0.28:268
chr13	25670919	rs76861216	A	G	2541.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:187,80:0.30:267
chr13	25670953	rs74040928	G	A	2305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=6.007;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-8.555;QD=9.98;ReadPosRankSum=-1.832;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:163,68:0.29:231
chr13	25670953	.	GCC	ACT	1325	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=1;MMLQ=26;NF=17;NR=23;PP=1325;QD=34.4616968716;SC=GATGATGAGCGCCTTAAGGAT;SbPval=0.65;Source=Platypus;TC=122;TCF=55;TCR=67;TR=40;WE=25670963;WS=25670943;set=Platypus	GT:AD:AF:DP	1/0:82,40:0.33:122
chr13	25670955	rs79397892	C	T	2299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=5.098;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-8.387;QD=10.27;ReadPosRankSum=-1.338;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:158,66:0.29:224
chr13	25670978	.	C	T	2066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-8.478;QD=9.66;ReadPosRankSum=2.401;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:154,60:0.28:214
chr13	25670981	rs77476965	G	C	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-8.452;QD=9.84;ReadPosRankSum=2.269;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:153,60:0.28:213
chr13	25670984	rs11619791	C	T	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	25670988	rs74564616	T	G	2300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-8.001;QD=10.65;ReadPosRankSum=1.987;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:151,65:0.30:216
chr13	25671008	rs76447065	C	T	2513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=5.029;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-7.260;QD=11.12;ReadPosRankSum=1.813;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:154,72:0.32:226
chr13	25671015	rs75314628	A	G	2478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=6.010;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-6.727;QD=10.82;ReadPosRankSum=2.176;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:159,70:0.31:229
chr13	25671027	rs78826513	A	G	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-6.123;QD=8.60;ReadPosRankSum=2.372;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:167,69:0.29:236
chr13	25671062	rs78534836	A	G	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:239,93:0.28:332
chr13	25671080	rs76241879	A	G	2622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-8.646;QD=7.35;ReadPosRankSum=1.641;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:274,83:0.23:357
chr13	25671089	rs75281454	G	T	2506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-8.564;QD=6.72;ReadPosRankSum=1.424;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:292,81:0.22:373
chr13	25671097	rs140090397	A	AT	2362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-7.935;QD=6.20;ReadPosRankSum=1.247;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:304,77:0.20:381
chr13	25671122	rs79072440	C	T	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.915;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-9.219;QD=3.74;ReadPosRankSum=1.227;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:353,60:0.15:413
chr13	25671143	rs78671990	A	G	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.217;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-10.577;QD=2.41;ReadPosRankSum=-0.769;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:389,53:0.12:442
chr13	25671149	rs368285293	ACGG	A	1200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.949;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=5.367;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-12.605;QD=2.67;ReadPosRankSum=-2.123;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:391,58:0.13:449
chr13	25671154	rs371971190	AGACGGAACT	A	1193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.585;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=4.149;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-12.786;QD=2.64;ReadPosRankSum=-2.100;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:395,57:0.13:452
chr13	25671168	rs78552667	C	T	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.374;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=3.952;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-12.743;QD=2.90;ReadPosRankSum=-2.259;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:366,58:0.14:424
chr13	25671172	rs79593984	C	A	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.365;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=6.746;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-12.660;QD=2.82;ReadPosRankSum=-1.698;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:363,56:0.13:419
chr13	25671195	rs201411821	A	G	2488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.139;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=3.532;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-15.200;QD=6.65;ReadPosRankSum=-1.866;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:297,77:0.21:374
chr13	25671200	rs76111404	C	T	2295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=3.648;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-15.917;QD=6.62;ReadPosRankSum=-1.453;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:273,74:0.21:347
chr13	25671206	rs76614854	A	G	2376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.094;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=6.879;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-16.184;QD=6.25;ReadPosRankSum=0.148;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:302,78:0.21:380
chr13	25671210	rs80062522	C	T	2456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.409;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=7.949;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-16.057;QD=6.27;ReadPosRankSum=1.799;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:316,76:0.19:392
chr13	25671214	rs201081849	T	G	2608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.988;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=6.396;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-14.302;QD=6.21;ReadPosRankSum=-0.209;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:325,95:0.23:420
chr13	25671271	rs79246694	A	G	5560.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:371,160:0.30:531
chr13	25671272	rs376589131	AG	A	5691.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:370,160:0.30:530
chr13	25671274	rs76994938	C	T	5745.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:367,161:0.30:528
chr13	25671292	rs80261016	C	T	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:352,159:0.31:511
chr13	25671310	rs371130768	TTATGA	T	4916.73	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:355,144:0.29:499
chr13	25671320	.	A	G	4949.77	.	AC=1;AF=0.500;AN=2;DP=493;set=Intersection	GT:AD:AF:DP	0/1:349,142:0.29:491
chr13	25671332	rs371570689	CA	C	3464.73	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:328,132:0.29:460
chr13	25671369	rs76804900	G	T	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=11.081;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-4.612;QD=2.33;ReadPosRankSum=-1.736;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:320,83:0.21:403
chr13	25671667	rs75484271	A	T	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.307;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-15.260;QD=4.49;ReadPosRankSum=3.191;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:213,44:0.17:257
chr13	25671672	rs78778235	A	G	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.126;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-15.807;QD=4.01;ReadPosRankSum=4.050;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:231,44:0.16:275
chr13	25671679	rs112901832	T	C	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.815;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-16.363;QD=3.51;ReadPosRankSum=4.946;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:250,44:0.15:294
chr13	25671688	rs113617207	G	C	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-17.258;QD=2.90;ReadPosRankSum=6.284;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:282,44:0.13:326
chr13	25671699	rs201614365	GT	CC	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.579;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-19.087;QD=2.32;ReadPosRankSum=6.681;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:340,46:0.12:386
chr13	25671742	rs140135080	G	A	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.106;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-22.796;QD=1.34;ReadPosRankSum=-0.571;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:633,69:0.10:702
chr13	25671755	rs116223079	G	A	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.121;ClippingRankSum=0.000;DB;DP=728;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-22.842;QD=1.19;ReadPosRankSum=-4.019;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:656,69:0.10:725
chr13	25671759	rs115121649	C	T	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.996;ClippingRankSum=0.000;DB;DP=735;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-22.954;QD=1.16;ReadPosRankSum=-5.173;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:663,69:0.09:732
chr13	25715574	rs9511659	C	T	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	25802491	rs4770813	A	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	25825889	rs4312169	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	25848404	rs4387458	A	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	25861196	rs146458541	TA	T	709.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	25883998	rs145924681	GGAAAA	G	1588.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	25886932	rs4341628	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	25893363	rs59567333	GTTTATA	G	677.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=42.36;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	25901781	rs7997070	A	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	25911050	rs75002041	AT	A	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.171;QD=2.82;ReadPosRankSum=1.269;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:61,35:0.36:96
chr13	26137989	rs12871941	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	26165561	.	C	CT	10796.73	.	AC=2;AF=1.00;AN=2;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=36.23;SOR=1.586;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr13	26273385	rs6491088	G	C	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr13	26273538	rs2296003	C	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	26411561	rs71793513	CCACACACA	C	777.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;QD=38.89;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	26436641	rs2249800	C	T	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	26442231	rs76950938	T	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	26445248	.	G	GT	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.814;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:146,41:0.22:187
chr13	26501227	rs1185907	C	T	5530.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr13	26535625	rs9511998	G	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	26586775	rs2274135	C	T	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	26974562	rs998692	G	A	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr13	27334084	rs9581737	T	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	27643597	rs9512534	C	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.53;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	27828041	rs10467685	A	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	27828529	.	A	ATTTTTTT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.93;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr13	27829310	rs3094293	G	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	27830591	.	GCACA	G	90	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=25;MMLQ=28;MQ=52.22;NF=0;NR=2;PP=90;QD=61.5;SC=ACCCAGAGAAGCACACTTTGT;SbPval=1.0;Source=Platypus;TC=15;TCF=2;TCR=13;TR=2;WE=27830602;WS=27830581;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chr13	27830620	.	GC	G	74	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=2;MGOF=33;MMLQ=28;MQ=48.74;NF=0;NR=2;PP=74;QD=61.515449935;SC=ATGGGAAGGAGCCTGAGCTGC;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=2;WE=27830628;WS=27830610;set=Platypus	GT:AD:AF:DP	0/1:9,2:0.18:11
chr13	27845284	rs9507866	C	A	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	27997985	rs33932496	GC	G	5907.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	27998074	.	CTT	C	170.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.18;ReadPosRankSum=-2.287;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr13	28009920	rs1218825	G	C	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr13	28133956	rs373436911	TA	T	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.990;QD=1.46;ReadPosRankSum=1.342;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:159,71:0.31:230
chr13	28197436	rs7097	C	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	28498323	rs9805632	G	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	28519354	rs2504220	A	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;MQ=59.87;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	28537242	rs1805108	A	C	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	28537317	rs1805107	G	A	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr13	28537537	rs2504212	T	G	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	28539185	rs2481953	T	A	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	28541583	rs2481967	T	G	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	28562605	rs3897926	T	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	28589662	rs4497507	C	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.56;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	28602226	rs60462219	AAG	A	2092.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.372;QD=29.48;ReadPosRankSum=2.373;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:2,69:0.97:71
chr13	28607916	rs2491222	T	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	28607989	rs2491223	T	G	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	28609825	rs2491227	A	G	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr13	28609846	rs2491228	A	T	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	28609991	rs2491229	T	C	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.96;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	28609997	rs2491230	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.70;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	28610183	rs2491231	A	G	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	28622356	rs2153000	G	A	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	28624294	rs1933437	G	A	9697.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr13	28636084	rs7338903	G	A	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	28644510	rs2387350	C	A	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	28647489	rs35318238	GA	G	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.778;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.601;QD=5.48;ReadPosRankSum=1.432;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:41,70:0.63:111
chr13	28712689	rs138028125	C	G	7879.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr13	28835527	rs5802469	T	TC	1925.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.76;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	28882948	rs9579177	G	A	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	28883061	rs7993418	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	28885672	rs4771238	C	T	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	28886113	rs7328692	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	28893484	rs2296188	T	C	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	28896979	rs56314249	C	T	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	28942840	rs11374493	C	CT	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=1.405;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:14,43:0.75:57
chr13	28958955	rs3751395	C	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	28964198	rs17537350	C	T	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr13	28970917	rs7990486	C	T	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	28980150	rs5802481	A	AG	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	29069039	rs55927955	G	A	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	29236489	rs1340815	C	T	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	29238576	rs3737528	T	C	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.27;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	29274977	rs3831478	T	TA	425.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	29275102	rs947027	T	C	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	29275129	rs705423	C	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	29674840	rs1536720	T	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	29674855	rs1536719	A	G	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	29855822	rs3751335	C	T	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	29898768	rs928661	A	C	8068.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,322:0.99:324
chr13	29898881	rs928660	A	G	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	29898889	rs928659	G	C	7607.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=1.145;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr13	30014373	rs7337496	C	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	30071310	rs2258198	G	T	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	30075114	rs882953	C	T	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	30077088	rs2482096	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	30090404	rs2989592	T	C	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	30091516	rs2490267	T	C	5669.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr13	30091714	rs2482089	G	A	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	30091819	rs2482090	G	C	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	30098215	rs2776957	C	T	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	30098226	rs2776958	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	30346392	rs140223719	CTATAT	C	1920.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr13	30351248	rs35681461	T	TA	4447.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.10;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	30805627	rs202087	A	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	30829757	rs11348486	CA	C	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.710;QD=7.73;ReadPosRankSum=1.834;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr13	31036681	rs1929606	A	G	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr13	31221106	rs3742303	C	T	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	31231513	rs7983138	C	T	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	31231806	rs7984952	T	C	8084.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr13	31233063	rs3742302	G	A	10754.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr13	31287979	rs147763360	G	GTA	4992.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:5,143:0.97:148
chr13	31318020	rs4360791	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	31318308	rs3803277	C	A	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	31318401	rs3803278	T	C	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	31480827	rs9531945	A	G	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr13	31531195	rs6560988	T	C	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	31540569	.	CTTT	C	1706.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=28.45;ReadPosRankSum=0.622;SOR=2.056;set=HC	GT:AD:AF:DP	1/1:3,57:0.95:60
chr13	31540596	rs35840435	C	T	2338.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.690;MLEAC=2;MLEAF=1.000;MQ=59.64;MQRankSum=-0.099;QD=44.13;ReadPosRankSum=1.703;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr13	31543032	rs141900798	G	A	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	31543095	rs2274869	C	T	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr13	31722620	rs35594388	TA	T	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.392;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:52,41:0.44:93
chr13	31725617	rs2146895	C	T	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	31732867	rs73171047	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	31735759	rs2280059	G	A	17987.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,698:1.00:698
chr13	31789169	rs35344913	CT	C	504.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-1.099;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:4,37:0.90:41
chr13	31796969	rs2147515	G	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	31821093	rs9542300	T	C	1085.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.000;QD=25.85;ReadPosRankSum=1.494;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:1,41:0.98:42
chr13	31821992	rs4943266	T	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	31843320	rs281865462	TA	T	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	31848535	rs912600	G	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	31848823	rs728930	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	31850714	rs1028751	G	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	31850803	rs137981677	C	CACAT	2577.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	31860769	rs9543606	G	C	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	31861059	rs1397890	G	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	31891561	rs1041074	T	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	32332556	rs61946567	C	T	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	32335840	rs9532478	A	T	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr13	32339382	rs12870532	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	32340193	rs35564049	T	TA	1346.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.45;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	32348859	rs9549049	T	C	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	32348987	rs17076647	C	T	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	32360547	rs7325513	A	G	8197.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr13	32360583	rs9549106	A	G	6383.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.747;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=3.019;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.214;QD=23.73;ReadPosRankSum=-0.175;SOR=0.120;set=HC	GT:AD:AF:DP	1/1:2,267:0.99:269
chr13	32360691	rs71941366	T	TA	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.327;MLEAC=1;MLEAF=0.500;MQ=62.60;MQRankSum=2.005;QD=13.41;ReadPosRankSum=0.334;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:9,32:0.78:41
chr13	32371361	rs17076657	A	G	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	32792814	.	C	CAAAA	119.94	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	32798235	rs5802638	T	TA	419.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	32800145	rs45612031	A	C	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	32823882	rs2806630	G	A	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	32834538	rs5802640	C	CTATCT	1039.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	32834617	rs4941521	T	C	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	32849316	rs71436473	C	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	32849345	rs183269	A	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.86;QD=24.49;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	32849359	.	C	CAA	239.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.55;QD=18.44;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	32852585	rs11617081	C	T	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	32866221	rs6561216	A	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	32905265	rs206073	G	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	32906729	rs144848	A	C	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr13	32913055	rs206075	A	G	7071.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr13	32915005	rs206076	G	C	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	32929387	rs169547	T	C	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	32936646	rs9534262	T	C	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	32953388	rs4942486	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	33052294	rs380627	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	33095620	rs621450	G	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	33101731	rs391612	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	33111284	.	A	G	73.28	.	AC=2;AF=1.00;AN=2;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	33222831	rs2301389	G	A	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	33232334	rs7335546	G	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	33232435	rs2301393	A	G	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	33253136	rs11355777	GA	G	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=20.76;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	33268573	rs561056	T	C	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	33275733	rs34184885	G	GCA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.39;ReadPosRankSum=2.189;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr13	33309563	rs17516382	C	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	33315206	.	G	A	367	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=3;HapScore=2;MGOF=73;MMLQ=20;MQ=59.68;NF=11;NR=8;PP=367;QD=21.145853292;SC=TTTTTTTCTCGTTTATTTTTA;SbPval=0.27;Source=Platypus;TC=25;TCF=17;TCR=8;TR=19;WE=33315214;WS=33315196;set=Platypus	GT:AD:AF:DP	1/1:6,19:0.76:25
chr13	33320054	rs4942867	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	33332648	rs3752474	G	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.685;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	33333876	rs7988089	A	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.23;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	33344241	rs112309957	AT	A	532.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=19.03;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	33349235	rs57144014	C	CTTTT	971.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=27.76;ReadPosRankSum=2.380;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr13	33349341	rs3492	A	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	33590851	rs2772364	T	C	16716.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr13	33627829	rs570875	T	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	33634983	rs564481	C	T	10255.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr13	33635463	rs648202	T	C	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	33635835	rs649964	T	C	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr13	33635939	rs650439	T	A	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	33637913	rs34137141	C	CA,CAA	759.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.555;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.94;MQRankSum=0.000;QD=13.10;ReadPosRankSum=1.780;SOR=0.473;set=HC	GT:AD:AF:DP	1/2:11,32,15:0.55,0.26:58
chr13	33686065	rs17518136	C	T	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr13	33701347	rs2764617	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	33703656	rs495680	T	C	18070.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr13	33713038	rs2858805	C	G	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr13	33739629	rs797232	G	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	33741559	rs797229	C	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	34013847	rs876133	G	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	34013959	rs651327	T	C	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	34098232	rs1329344	A	C	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	35252882	rs9572094	T	C	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	35618991	rs7996448	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	35806549	rs9565113	T	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	35926497	rs9565205	A	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	36049080	rs9565317	T	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	36141009	rs9544667	G	A	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	36224051	rs200267946	TACTGGG	T	219.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=36.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	36225929	rs7991019	T	C	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	36367641	rs1926459	G	C	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	36382312	rs4421866	C	T	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	36402426	rs2296645	A	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	36402475	rs2296646	G	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	36745029	rs1328641	C	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	36747798	rs1410633	C	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	36940028	rs1041140	G	A	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	37007040	rs4245378	A	G	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	37007491	rs71438101	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	37007494	rs145868841	GTTGA	G	842.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	37015242	rs17188012	C	G	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	37401917	rs11285105	GT	G	2128.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	37439964	rs3748305	C	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	37453293	rs10658358	C	CCTCT	1281.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=45.78;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	37526560	rs6563506	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	37546280	rs9576146	G	C	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	37569200	rs2323165	A	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	37580139	rs1127446	G	A	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	37581051	rs9576154	T	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	37583831	rs9469	G	A	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr13	37584838	rs7317750	G	A	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	37598113	rs4943441	A	G	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	37600199	rs4941856	A	G	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	37600284	rs9576155	G	A	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	37607449	.	G	A	277.77	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	37621528	rs1199983	A	G	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	37625601	rs1543738	T	C	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	37625770	rs5802853	A	AG	347.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	37679268	rs9576175	G	T	11960.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,461:1.00:461
chr13	38138730	rs4390468	C	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	38143325	rs58863577	CT	C	168.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=3.310;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=0.427;SOR=0.349;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr13	38144114	rs4628831	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	38144901	rs41306668	C	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	38148893	rs8000073	C	T	60.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	38152935	.	C	CAA	407.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.18;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr13	38152959	rs7322626	T	G	669.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.89;ReadPosRankSum=-0.745;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr13	38153130	rs7322993	T	C	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	38153351	rs7323378	T	C	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	38154161	rs73182687	G	A	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	38154189	rs7986347	G	A	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	38164445	rs1006416	G	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	38166357	rs9603229	T	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	38172867	rs17197663	G	A	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr13	38213053	rs73184537	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	38229502	.	T	TTA	102	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=1;HapScore=3;MGOF=8;MMLQ=26;MQ=60.0;NF=0;NR=6;PP=102;QD=18.0;SC=CTTGGCATGATTATATATATA;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=6;WE=38229511;WS=38229492;set=Platypus	GT:AD:AF:DP	0/1:7,6:0.46:13
chr13	38237872	rs2985171	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr13	38266000	rs7329237	G	T	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	38320594	rs35278654	TA	T	402.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.74;QD=16.11;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	38357471	rs3904512	G	A	6519.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr13	38924083	rs2231330	A	T	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr13	38924263	rs2231332	T	C	12160.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr13	38930783	rs2455410	G	A	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	38930893	rs2481880	C	T	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	38931144	rs9548318	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	38931650	rs34489703	G	GTT	1360.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:4,55:0.93:59
chr13	38932194	rs2150470	G	A	42.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	38932207	rs67284300	TA	T	33.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	38932545	rs11381230	G	GT	500.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.442;QD=17.27;ReadPosRankSum=-2.073;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr13	38932648	rs2485786	C	T	79.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=15.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	38932681	rs2485785	G	T	46.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	39262057	rs1868464	G	A	10176.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr13	39263714	rs2496423	T	C	31651.77	.	AC=2;AF=1.00;AN=2;DB;DP=1235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=25.80;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,1227:1.00:1227
chr13	39264690	rs2496425	T	C	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr13	39338612	rs2442370	T	C	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	39430182	.	TAAA	T	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.44;ReadPosRankSum=-0.257;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr13	39430314	rs9548509	C	T	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	39448455	rs9548518	A	G	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	39450583	rs67517056	T	TA	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr13	39452235	rs1540131	T	C	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	39452538	.	T	TGGCC	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-0.365;QD=28.67;ReadPosRankSum=2.668;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr13	39452934	rs9532296	C	T	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	39546530	rs8000175	C	G	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	39613187	rs45604133	A	G	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	39618366	.	TTG	T	173.73	.	AC=1;AF=0.500;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:46,15:0.25:61
chr13	40229744	rs9603589	C	T	11574.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr13	40254100	rs11414752	A	AT	607.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.51;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	40261945	rs4129745	A	G	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	40264066	rs9603593	T	C	44.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	40268685	rs9603594	T	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr13	40293288	rs5803008	AT	A	539.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.74;QD=19.28;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	40298620	.	CTT	C,CT	732.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=17.87;SOR=0.741;set=HC	GT:AD:AF:DP	1/2:0,22,19:0.54,0.46:41
chr13	40298805	rs9532421	C	T	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	41240099	.	G	A	2338.77	.	AC=2;AF=1.00;AN=2;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	41382711	rs17849654	A	T	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=25.48;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr13	41382807	rs60754171	T	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=24.64;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	41515286	rs1056820	T	A	9779.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr13	41517985	rs3764056	A	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.41;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	41523876	rs9525435	T	C	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr13	41525586	rs3736953	A	G	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	41533052	rs7799	T	C	17454.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,691:1.00:691
chr13	41650405	.	ATTTT	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-0.349;QD=5.70;ReadPosRankSum=-1.630;SOR=2.800;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr13	41705495	rs584594	A	G	6450.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr13	41706800	rs9566703	A	G	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	41767338	rs2039134	A	G	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.65;QD=43.59;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	41767341	rs2039135	A	G	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.46;QD=45.10;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr13	41791440	rs2274903	T	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	41797601	rs2026469	A	T	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	41807950	rs3751344	T	C	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	41834578	rs66465270	GT	G	508.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	41834744	rs2297555	C	T	8973.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr13	41835076	rs3215932	T	TA	2337.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	41835089	rs1332940	T	G	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	41837220	rs3818721	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	41902939	rs3812896	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	41949804	rs6560982	G	T	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	42042873	rs150442518	ACT	A	717.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.559;QD=1.47;ReadPosRankSum=-0.793;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:415,74:0.15:489
chr13	42043086	rs2324791	C	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	42044508	rs396963	A	G	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	42164634	.	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.25;ReadPosRankSum=-0.113;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr13	42189232	rs3862741	C	G	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	42277675	rs9315858	A	T	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	42303934	.	G	GACAC	175.87	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	42390740	rs78527162	G	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	42390761	rs75585975	T	C	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.232;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	42393618	rs2274812	A	G	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	42439498	rs76291279	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	42465490	rs7332372	C	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	42481712	rs2003064	C	T	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	42486399	rs2875457	C	T	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	42701739	rs670676	A	T	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	42733380	.	C	CTTTTT	304.75	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	42748100	.	CGT	C	107	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=59.88;NF=0;NR=7;PP=107;QD=16.2857142857;SC=TGTGTGCGTGCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=28;TCF=2;TCR=26;TR=7;WE=42748109;WS=42748084;set=Platypus	GT:AD:AF:DP	1/0:21,7:0.25:28
chr13	42764439	rs1170119	T	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.67;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	42772717	rs9533031	G	T	5481.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr13	42772774	rs35298264	GT	G	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.020;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.745;QD=7.68;ReadPosRankSum=-1.110;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr13	42780148	.	CTT	C,CT	1624.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=2.965;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.941;QD=10.83;ReadPosRankSum=0.156;SOR=0.826;set=HC	GT:AD:AF:DP	1/2:26,70,54:0.47,0.36:150
chr13	42783012	rs168329	G	A	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	42789765	.	A	G	3780.77	.	AC=2;AF=1.00;AN=2;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	42793298	rs9315899	G	T	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	42793479	rs180870	G	A	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	42793766	rs11277175	AGGTTTTTC	A	1551.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	42794004	rs347382	G	A	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	42803341	rs545602	T	C	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr13	43155168	rs2277438	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	43155443	rs2277439	G	A	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	43358309	.	C	CT	216.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=13.757;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=2.471;SOR=1.706;set=HC	GT:AD:AF:DP	1/1:3,18:0.86:21
chr13	43360772	rs57301416	T	TA	379.25	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:4,24:0.86:28
chr13	43462422	rs1044856	A	T	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr13	43474371	rs4942174	C	T	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.135;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	43491871	rs17621929	C	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	43491940	rs12864209	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	43566099	rs942311	T	A	7122.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr13	43566373	rs3825511	A	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	43788031	rs1044753	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	43788158	rs703207	G	A	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	43798077	rs9533433	A	C	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	43839494	rs4306408	G	A	8447.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr13	43843812	rs730210	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	43872419	rs4451860	C	T	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.56;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	43872451	rs141332734	C	CAA	514.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr13	43930337	rs2281713	A	G	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	43935405	rs1535580	C	T	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	44433700	rs1562216	G	A	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	44718132	rs71886914	CTGACCTA	C	4914.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	44948295	rs201663302	T	TG	8108.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=43.83;SOR=1.142;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr13	44948302	rs199705926	GA	G	8108.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=45.30;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr13	44964723	rs2281848	C	T	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	44969907	rs1467624	G	A	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr13	45010283	rs1555781	T	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	45090580	rs1336164	C	T	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	45517486	.	AAC	A	34	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=27;MQ=59.63;NF=1;NR=2;PP=34;QD=12.6666666667;SC=CCTTAAAACAAACACACACAC;SbPval=0.48;Source=Platypus;TC=20;TCF=4;TCR=16;TR=3;WE=45517495;WS=45517476;set=Platypus	GT:AD:AF:DP	0/1:17,3:0.15:20
chr13	45554013	rs3783150	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	45556123	rs12427714	T	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	45594584	rs7331627	T	C	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	45912634	rs9595305	T	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	45914957	rs2234216	T	C	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:2,413:1.00:415
chr13	45973231	.	G	GA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.428;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr13	45980223	rs35419409	A	AT	150.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.06;ReadPosRankSum=1.184;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr13	45982934	rs6561227	G	A	252.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	45985705	rs4941527	G	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	46039407	rs11619408	G	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	46060474	rs72096860	C	CGGAGA	2662.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr13	46066163	rs3014948	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	46077301	rs3014959	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	46077381	rs3014960	G	A	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	46085699	rs2985969	G	A	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	46085864	rs2985970	A	G	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr13	46093284	rs3818456	C	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	46098994	rs3014966	T	C	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.20;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	46099243	rs2985984	A	G	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	46103935	rs2274285	A	G	5618.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	46104130	rs2274286	G	C	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	46105021	rs66498730	AT	A	1194.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	46108643	rs3014901	T	C	443.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.10;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	46108853	rs3014902	TG	CA	11249.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr13	46148943	rs140782618	TG	T	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.070;QD=1.98;ReadPosRankSum=1.089;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr13	46170609	rs3014939	C	T	14434.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.10;QD=25.50;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,566:1.00:566
chr13	46170719	rs142875900	CCCAGATACTCTTCCTCCT	C	10955.73	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:3,264:0.99:267
chr13	46287153	rs9316154	A	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	46288145	rs7317245	A	G	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr13	46541673	rs9534264	T	A	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	46550061	rs11428563	G	GT	515.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	46562935	rs1134071	A	G	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr13	46619026	rs962694	T	C	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	46619071	rs3736943	T	C	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	46619316	rs3736944	T	C	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	46627677	rs1049669	T	C	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	46629944	rs1926447	A	G	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr13	46629995	rs1926446	C	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr13	46641324	rs34583549	T	TA	435.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	46641481	rs7337140	T	C	10679.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,425:1.00:425
chr13	46656412	rs3818477	T	G	184.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	46656669	rs2296642	A	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	46705224	rs78863617	A	G	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	46716683	rs2146879	T	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	46717246	rs2182485	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	46717337	rs9595419	C	A	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr13	46718722	rs6561297	T	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	46722390	rs13378812	G	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	46722443	rs10492451	A	C	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr13	46728771	rs4258501	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	46836201	rs2764598	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	46930372	rs9526171	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	46937058	.	CAT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.12;ReadPosRankSum=-0.189;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr13	46937078	.	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.20;ReadPosRankSum=0.601;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr13	47127813	rs45540131	C	T	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	47256071	rs151080336	T	TTGTGTGTGTG	45.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr13	47260054	rs842381	T	C	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	47261970	rs842375	T	C	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	47273458	rs706621	G	C	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	47279375	rs11483731	C	CT	2033.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:3,94:0.97:97
chr13	47279454	rs842387	A	G	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	47279680	rs3832915	A	AT	1182.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.65;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	47297352	rs7319836	G	A	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	47302934	rs3742273	T	A	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	47308109	rs2298086	A	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	47315984	rs3742274	T	C	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	47358540	rs8192889	T	C	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	47469940	rs6313	G	A	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr13	47470824	rs6312	C	T	5224.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	48547467	rs7320366	A	T	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	48563008	rs6561424	G	A	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	48563246	rs6561425	A	G	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	48571213	rs8001509	C	T	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	48575207	rs11316376	GA	G	8272.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.45;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr13	48575292	rs9567972	C	T	13912.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.966;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.086;QD=25.48;ReadPosRankSum=-1.153;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:1,545:1.00:546
chr13	48664556	.	T	TA	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=2.313;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.001;QD=1.62;ReadPosRankSum=1.524;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:271,73:0.21:344
chr13	48671081	rs1571256	A	G	8116.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr13	51287408	rs41284836	C	G	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	51397440	rs9563002	C	A	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr13	51417535	rs898861	G	A	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	51594741	rs1328361	T	G	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	51603768	rs9568497	T	C	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	51796468	rs7320388	T	C	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	51929375	rs9596506	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	51953840	rs3818360	C	T	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	51956122	rs9526753	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	52025330	.	A	AT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.168;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-0.820;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr13	52293532	rs912097	T	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	52365407	rs11309708	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.674;QD=2.34;ReadPosRankSum=0.185;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr13	52373814	rs9535761	G	C	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	52391341	rs975504	C	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	52425587	rs36141261	A	AT	1234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-1.973;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:24,75:0.76:99
chr13	52425658	rs71842329	CTT	C	194.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=15.611;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=1.409;SOR=2.414;set=HC	GT:AD:AF:DP	1/1:3,11:0.79:14
chr13	52482399	rs35577493	CAG	C	2822.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.72;QD=44.11;SOR=2.869;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	52508979	rs73202048	C	T	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	52511275	rs200831452	GAA	G	349.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.41;ReadPosRankSum=-0.957;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:5,14:0.74:19
chr13	52511362	rs9535795	C	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	52511606	rs2282057	G	A	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr13	52515354	rs1801249	A	G	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	52520704	rs2296246	C	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	52523808	rs732774	C	T	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=26.28;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	52524488	rs1061472	T	C	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	52524560	rs9526811	C	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	52542796	rs2147363	T	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	52544805	rs1801244	C	G	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	52544978	rs3742288	T	G	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	52548140	rs1801243	A	C	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	52585548	rs2277448	G	T	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr13	52585591	rs148013251	T	TCGGCG	3264.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	52602919	rs3825528	A	C	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	52603194	rs3742289	G	T	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	52603775	rs3742291	C	T	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	52657287	rs9563091	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	52657689	rs12585654	T	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr13	52663491	rs9535861	A	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.23;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	52684801	rs71665641	TAC	T	761.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	52701490	rs3076657	A	ACTT	2391.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	52701637	rs1886544	T	G	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	52701782	rs1886543	T	C	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	52707240	rs3368	C	G	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	52707751	rs3831081	T	TCACACA	818.37	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr13	52709742	rs2408611	G	A	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	52709938	rs2296351	A	C	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	52710044	rs2296350	T	C	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	52710058	rs2296349	T	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	52717950	rs3783242	C	T	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	52718050	rs3837575	C	CT	463.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.08;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	52952928	rs113543720	CA	C	375.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	52971893	rs3803264	G	A	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr13	52989863	rs1056335	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	53009048	rs11148252	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	53010353	rs150816705	A	AACACACAC	214.73	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=53.68;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	53029770	rs72440971	CGCGGTGGCGGTGGCGGTG	C	4002.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=44.47;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	53030565	rs9536079	G	A	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	53035783	rs7337054	T	C	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	53035925	rs7335867	A	G	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr13	53036398	rs3803262	A	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	53240884	rs9316580	G	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	53254082	rs4539485	T	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	53254296	rs7986540	A	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	53287023	rs2147692	G	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	53297962	rs61959657	G	A	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	53602970	rs2298229	A	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	58299434	rs5803842	G	GA	1589.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.472;QD=14.58;ReadPosRankSum=0.310;SOR=0.473;set=HC	GT:AD:AF:DP	1/1:18,91:0.83:109
chr13	60240961	rs9538494	C	T	3619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.223;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=3.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=0.082;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:104,171:0.62:275
chr13	60385060	rs10665848	A	ATTAC	1726.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=43.17;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	60435526	rs61956736	T	C	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:53,70:0.57:123
chr13	60589985	rs41293426	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.348;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr13	60590299	rs2762134	C	T	2290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.577;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:101,65:0.39:166
chr13	60590307	rs12429010	C	T	2230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=-0.698;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:89,60:0.40:149
chr13	60617060	rs2800294	A	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr13	61058808	.	A	AT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.222;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr13	61986918	rs3812872	C	A	3278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=0.751;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:438,201:0.31:639
chr13	61988107	rs4281600	T	G	9246.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr13	63745832	rs298898	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	66540575	rs3843944	C	T	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	66792439	rs76595065	T	C	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.353;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:82,38:0.32:120
chr13	67800935	rs9571740	G	A	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:269,142:0.35:411
chr13	67802339	rs8000556	A	T	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:163,82:0.33:245
chr13	70281723	rs79899610	T	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr13	70293715	rs11336815	TA	T	1582.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:26,75:0.74:101
chr13	70314807	rs7331253	A	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.265;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr13	70413291	rs41283972	A	G	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:23,46:0.67:69
chr13	70413346	rs2875574	T	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr13	70413365	rs58414297	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr13	70535355	rs9592668	T	A	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	70681305	rs9564649	G	A	4144.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:104,202:0.66:306
chr13	70681873	rs3751428	A	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:60,25:0.29:85
chr13	72038653	rs915052	C	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	72440658	.	TGCCGCCGCCGCCGCC	T,TGCCGCCGCC	5904.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=237;set=Intersection	GT:AF:DP	1/2:0.37,0.63:148
chr13	73284411	rs7931	A	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.534;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr13	73293249	rs67282069	CA	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.543;QD=3.73;ReadPosRankSum=1.417;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr13	73301655	rs1465897	A	C	12438.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr13	73301728	rs1465896	T	C	8481.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr13	73302157	rs11350390	CT	C	20691.73	.	AC=2;AF=1.00;AN=2;DB;DP=629;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=33.81;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,612:1.00:612
chr13	73302326	rs113113572	G	A	6719.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:183,318:0.63:501
chr13	73302481	rs4885034	G	A	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr13	73309347	rs9543106	C	T	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	73329358	rs10887	G	A	13854.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,547:1.00:547
chr13	73343039	rs2196979	C	T	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	73349359	rs7332388	G	C	5010.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	73366569	rs113955522	T	C	851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.759;QD=13.96;ReadPosRankSum=-2.684;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,40:0.66:61
chr13	73366801	rs77614879	T	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	73369642	rs1372000	A	G	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr13	73371966	rs41286062	A	G	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	73372202	rs9543124	G	A	2410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=0.237;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:68,116:0.63:184
chr13	73409508	rs200683940	T	TA	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.957;QD=2.89;ReadPosRankSum=2.207;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr13	73410236	rs11382594	C	CA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=3.340;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr13	73467847	rs141172083	GAAGT	G	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr13	73636910	rs113148226	A	AGT,AGTGT	6187.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=216;set=Intersection	GT:AF:DP	1/2:0.12,0.87:163
chr13	73638125	rs4885061	G	T	1135.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.40;ReadPosRankSum=0.612;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr13	73650112	rs9573097	C	A	1237.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=7.687;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.29;ReadPosRankSum=0.090;SOR=2.998;set=HC	GT:AD:AF:DP	1/1:4,57:0.93:61
chr13	74289799	rs6562780	A	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	74339104	rs3764134	G	T	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:305,126:0.29:431
chr13	74518210	rs9573330	G	A	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:192,111:0.37:303
chr13	74988714	rs1931954	C	T	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr13	75860804	rs534538	C	A	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	75880667	rs2297209	G	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	75884216	rs1062087	C	T	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr13	75887127	rs2274757	T	C	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	75894015	rs2274758	T	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	75898596	rs2297210	C	A	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	75901749	rs2297206	G	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.13;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	75910909	rs693134	C	A	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.527;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:27,23:0.46:50
chr13	75910950	rs9573525	T	G	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=0.183;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:95,69:0.42:164
chr13	75915215	rs80163254	T	C	1549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=0.215;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:71,41:0.37:112
chr13	75915215	.	TAT	CCA	1223	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=27;MQ=60.0;NF=19;NR=9;PP=1223;QD=45.9452812451;SC=TTAACAAAATTATTAAACAAC;SbPval=0.7;Source=Platypus;TC=83;TCF=53;TCR=30;TR=28;WE=75915225;WS=75915205;set=Platypus	GT:AD:AF:DP	1/0:55,28:0.34:83
chr13	75915216	rs80143047	A	C	1549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=0.076;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:72,42:0.37:114
chr13	75915217	rs76964739	T	A	1549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.144;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:76,44:0.37:120
chr13	75915250	rs35018625	T	TA	1479.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:129,56:0.30:185
chr13	75915859	rs9888477	C	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr13	75923536	rs3831188	T	TA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.59;ReadPosRankSum=2.288;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr13	75936519	rs7983969	C	G	10090.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr13	76055397	rs9573565	C	T	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:79,136:0.63:215
chr13	76055820	rs7327548	G	C	8487.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:227,411:0.64:638
chr13	76101863	rs1408042	T	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr13	76102137	rs71786092	GCACACA	G,GCA	528.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.47;QD=35.25;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:0,8,7:0.53,0.47:15
chr13	76111702	rs9543964	A	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr13	76124151	rs8192738	C	T	9309.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:259,440:0.63:699
chr13	76135028	rs4884008	T	A	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:39,99:0.72:138
chr13	76140814	rs56945758	CT	C	576.75	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:4,36:0.90:40
chr13	76164073	rs35701234	GTCC	G	2298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.341;QD=12.99;ReadPosRankSum=-0.418;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:113,64:0.36:177
chr13	76169219	rs2274046	T	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr13	76169234	rs7330411	G	A	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	76180042	rs2274048	T	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=1.398;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr13	76210742	rs2224797	A	C	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	76287432	rs3837544	ATG	A	1108.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr13	76334818	rs7997101	C	T	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:51,71:0.58:122
chr13	76335196	rs10594987	GAT	G	602.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=31.72;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	76369746	rs668008	C	T	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	76370755	.	A	AT	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.564;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:127,30:0.19:157
chr13	76374795	rs34295825	A	G	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:67,81:0.55:148
chr13	76378339	rs71434809	G	A	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:48,112:0.70:160
chr13	76378459	rs625033	T	C	7801.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr13	76407127	rs35034793	A	G	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:55,109:0.66:164
chr13	76409436	rs2273997	A	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr13	76410725	rs2273996	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-1.037;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr13	76417101	rs920701	C	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:83,51:0.38:134
chr13	76419421	rs3832886	AT	A	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.03;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	76423248	rs7986131	T	C	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	76429311	rs9573671	G	A	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.802;QD=12.46;ReadPosRankSum=0.152;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:70,112:0.62:182
chr13	76429619	rs4885354	C	A	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	76431953	rs1407963	C	T	4707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=1.160;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:147,224:0.60:371
chr13	76431996	rs1407965	A	G	6315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=-0.945;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:202,305:0.60:507
chr13	76432010	rs1407966	G	A	6597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-1.381;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:204,315:0.61:519
chr13	76432173	rs5804839	C	CT	1386.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr13	76445155	rs9544057	G	C	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr13	76445189	rs9600566	A	G	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.627;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:144,64:0.31:208
chr13	76445316	rs9600567	C	T	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	76447950	.	CTTTTTT	C	206.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.67;ReadPosRankSum=1.255;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr13	76457148	rs7987971	A	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	76457183	rs9530477	T	C	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	76457275	.	C	A	4887.77	.	AC=1;AF=0.500;AN=2;DP=393;set=Intersection	GT:AD:AF:DP	0/1:152,237:0.61:389
chr13	77522725	rs67524409	GACTT	G	3575.73	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:195,100:0.34:295
chr13	77522925	rs588702	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	77527707	rs9530614	A	G	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:204,128:0.39:332
chr13	77527764	rs17385627	T	A	5803.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:183,285:0.61:468
chr13	77566090	rs77416795	C	T	3148.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:75,147:0.66:222
chr13	77569901	rs605153	G	A	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	77630994	rs1340531	T	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr13	77632470	rs2285386	C	T	3973.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:128,196:0.60:324
chr13	77644708	.	A	AAC	918.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.312;QD=5.44;ReadPosRankSum=0.766;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:125,44:0.26:169
chr13	77644862	rs71749271	GA	G	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.537;QD=1.15;ReadPosRankSum=-0.933;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:83,31:0.27:114
chr13	77725106	rs9574006	C	A	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:52,67:0.56:119
chr13	77732333	rs3861128	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr13	77738664	rs2274547	A	G	2961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-0.915;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:312,173:0.36:485
chr13	77739291	rs9318468	A	T	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=4.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=0.720;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:46,87:0.65:133
chr13	77743948	rs11617095	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr13	77751892	rs4885445	C	T	4469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=-0.800;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:131,210:0.62:341
chr13	77792099	rs374242789	TA	T	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=4.343;QD=1.39;ReadPosRankSum=-2.089;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:104,40:0.28:144
chr13	77818100	rs35429706	C	CA	956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.718;QD=4.43;ReadPosRankSum=0.377;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:126,90:0.42:216
chr13	77835520	rs11436373	T	TA	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=1.094;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:44,31:0.41:75
chr13	77900848	rs117722214	T	A	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr13	78137931	rs117031225	G	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.605;QD=4.24;ReadPosRankSum=0.690;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:63,25:0.28:88
chr13	78142653	rs11325667	GA	G	409.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	78146301	rs678047	C	T	7266.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr13	78177082	rs7490669	T	A	59.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	78178451	rs6563011	C	T	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	78183167	rs912293	G	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	78191824	rs4142585	G	T	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	78192207	rs9574090	T	C	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	78211386	rs72078326	CAT	C	218.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr13	78216873	rs1053985	A	G	1547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=0.722;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:48,72:0.60:120
chr13	78272267	rs201380414	T	TGG	4133.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	78272276	rs71102772	G	GC	3611.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.30;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	78317054	rs372604248	CT	C	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=1.453;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:121,46:0.28:167
chr13	78474858	rs116962929	A	C	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=0.384;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:41,38:0.48:79
chr13	78477674	rs5348	A	G	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr13	79176483	rs371388366	CTGG	C	994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=900;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.717;QD=1.21;ReadPosRankSum=-0.648;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:741,81:0.10:822
chr13	79177291	rs9601093	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr13	79194670	rs9593348	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr13	79194750	rs35712557	TGA	T	5004.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.40;ReadPosRankSum=0.094;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:110,148:0.57:258
chr13	79209382	rs9805409	A	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr13	79216178	rs9601108	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr13	79216418	rs7327732	A	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-2.051;QD=13.40;ReadPosRankSum=0.672;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr13	79766188	rs2988039	A	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:255,119:0.32:374
chr13	79894736	rs3187338	C	T	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	79894877	rs71696319	CA	C	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr13	79915389	rs7981067	G	T	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr13	79916792	rs374223990	T	TA	1523.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.22;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	79916973	rs3742118	A	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	79927157	rs11341470	CA	C	264.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	79929183	rs9530900	G	A	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	79929326	rs9530901	G	A	8907.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr13	79932617	rs7994560	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	79940150	rs3831152	CTG	C	2839.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	79940811	rs7327603	T	C	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr13	79943166	rs10710579	TA	T	253.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.590;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.516;QD=14.10;ReadPosRankSum=0.000;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr13	79946071	rs369797909	TA	T	620.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.886;QD=9.00;ReadPosRankSum=0.969;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:14,55:0.80:69
chr13	79946104	rs9545093	A	G	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	79946163	rs7325232	G	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	79952888	rs182246005	T	C	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr13	80095030	rs11549502	C	T	3790.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:127,182:0.59:309
chr13	80910786	rs4728	C	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.73;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	80910792	rs700397	T	G	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	86369120	rs3825413	C	T	7012.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr13	87045827	rs9513670	T	C	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	88270840	rs4036976	CTGT	C	2811.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:30,70:0.70:100
chr13	88270860	rs956960	A	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:55,91:0.62:146
chr13	92408505	rs3783054	T	G	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr13	92796964	rs12429836	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=0.163;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr13	93142312	rs2149060	T	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr13	93142362	rs722178	C	T	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	94938785	rs1409174	A	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	94938808	rs56210803	GAT	G	699.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr13	94958100	rs10492630	T	A	190.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.09;ReadPosRankSum=-0.126;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr13	95034540	rs9524470	T	C	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr13	95090692	rs1540979	T	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	95096505	rs7339198	G	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	95097956	rs755684	C	T	9350.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr13	95118735	rs12864325	T	C	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.63;ReadPosRankSum=0.586;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:9,35:0.80:44
chr13	95118741	rs12877849	C	T	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.11;ReadPosRankSum=1.365;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:12,40:0.77:52
chr13	95243270	rs9301979	G	A	8909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=0.001;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:254,438:0.63:692
chr13	95254382	rs9556404	A	G	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	95264604	rs9524559	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:119,52:0.30:171
chr13	95275576	rs4296139	C	G	4746.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr13	95279505	rs9524568	T	A	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=0.380;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr13	95363617	rs6492735	C	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr13	95363824	.	G	C	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-2.460;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:201,63:0.24:264
chr13	95364046	rs1060474	C	G	5842.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:173,278:0.62:451
chr13	95364337	rs2253604	T	G	16724.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,639:1.00:639
chr13	95673939	rs9524765	A	G	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	95714976	rs1751034	C	T	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	95715148	rs202097426	AAAAG	A	911.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=7.41;ReadPosRankSum=0.791;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:49,74:0.60:123
chr13	95725359	rs2274401	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr13	95726541	rs1189466	A	G	25004.77	.	AC=2;AF=1.00;AN=2;DB;DP=996;set=Intersection	GT:AD:AF:DP	1/1:1,983:1.00:984
chr13	95727780	rs1678339	T	C	7509.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr13	95735604	rs1189437	G	T	3277.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	95815834	rs11568650	A	G	4336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-0.294;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:130,205:0.61:335
chr13	95829843	rs2296653	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	95829870	rs1751005	T	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	95847020	rs2274403	A	G	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr13	95861804	rs899494	A	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:134,69:0.34:203
chr13	95862860	rs3046400	AGAGT	A	939.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:80,29:0.27:109
chr13	95862896	rs899496	A	G	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:141,52:0.27:193
chr13	95863143	rs899497	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:84,52:0.38:136
chr13	95899354	rs4148437	A	G	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:164,91:0.36:255
chr13	95900071	rs9556466	C	T	1926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=3.041;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:215,113:0.34:328
chr13	95900172	rs56389126	G	GCACACACACA,GCACACACACACACACACACACACACACACA	654.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=43;set=Intersection	GT:AF:DP	1/2:0.71,0.29:17
chr13	95921679	.	C	CA	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-0.296;QD=6.89;ReadPosRankSum=-2.129;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr13	95921690	rs1970476	T	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-0.296;QD=7.44;ReadPosRankSum=-1.146;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr13	95921692	rs1970475	T	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=0.069;QD=19.23;ReadPosRankSum=0.410;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr13	95921694	rs2389230	T	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=0.069;QD=14.27;ReadPosRankSum=0.195;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr13	95953405	rs61974974	G	A	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	96230279	rs1325774	T	G	2864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-2.558;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:249,163:0.40:412
chr13	96239805	rs11070136	G	A	3281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=2.192;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:257,178:0.41:435
chr13	96251524	rs4497528	A	C	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=-2.737;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:21,51:0.71:72
chr13	96258410	rs7319952	A	G	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:91,41:0.31:132
chr13	96270202	rs17268561	A	T	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:147,79:0.35:226
chr13	96293523	rs61975171	A	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:175,74:0.30:249
chr13	96361680	rs3087341	A	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr13	96394766	rs118143105	C	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr13	96394812	.	CCCA	C	848.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr13	96410115	rs3087339	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr13	96506664	rs11070154	A	G	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=-0.816;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:279,141:0.34:420
chr13	96529376	rs10601193	TCTGC	T	106.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr13	96540141	rs9525075	T	C	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	96540141	.	TTT	CTC	597	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5168;HP=2;HapScore=1;MGOF=70;MMLQ=27;MQ=60.0;NF=12;NR=8;PP=597;QD=32.5233937431;SC=TTCACTCAGATTTACCTTTCT;SbPval=0.62;Source=Platypus;TC=22;TCF=13;TCR=9;TR=20;WE=96540151;WS=96540131;set=Platypus	GT:AD:AF:DP	1/0:2,20:0.91:22
chr13	96540143	rs9525076	T	C	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	96540204	rs12876018	T	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-3.165;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr13	96599271	rs7986005	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr13	96599433	rs9556512	A	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr13	96599445	rs9556513	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr13	96625061	rs56377514	T	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr13	96636170	rs9562008	G	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr13	96638636	rs816142	A	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.511;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:52,22:0.30:74
chr13	96641695	rs555120	T	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	97639414	rs9284174	C	T	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.162;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:294,115:0.28:409
chr13	97986448	rs16952071	C	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	98017211	rs3825422	A	G	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	98087096	rs3803251	T	C	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	98629334	rs9517155	G	C	17267.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=707;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.03;ReadPosRankSum=-1.105;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:4,686:0.99:690
chr13	98632349	rs555647	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	98633437	rs17190357	A	G	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-0.020;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:81,38:0.32:119
chr13	98634572	rs11620106	T	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr13	98637917	rs11366582	CT	C	326.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=2.138;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr13	98637931	rs60936969	T	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=-0.943;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr13	98640318	rs592246	C	T	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	98640386	rs588144	A	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	98645580	rs56411106	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr13	98650024	rs651241	G	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	98658358	rs633161	G	A	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr13	98658610	.	ATTTTTTTTTT	A	554.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	98666549	rs6491395	T	C	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=27.51;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	98670641	rs528546	G	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr13	98829176	rs628778	T	C	22613.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.072;QD=25.64;ReadPosRankSum=-1.427;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:2,880:1.00:882
chr13	98896776	rs7318267	C	T	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	99017533	rs587377	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr13	99042158	rs9582224	G	A	4253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-1.137;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:130,210:0.62:340
chr13	99061556	rs5806061	C	CT	6941.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:7,312:0.98:319
chr13	99062978	rs2291175	G	T	4289.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:119,208:0.64:327
chr13	99063106	rs117039391	C	T	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:41,104:0.72:145
chr13	99090040	rs35861926	T	G	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.49;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	99090166	rs59023150	TG	T	3772.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	99093094	rs2146998	T	C	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr13	99098318	rs2274053	C	T	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr13	99098470	rs2274054	C	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	99098882	rs2281766	A	C	17061.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr13	99100474	rs9517310	C	T	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	99105395	rs8481	G	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	99109319	rs2031237	C	A	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	99109719	.	CTTT	C	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=-1.639;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr13	99112468	rs112280830	T	TGCCTGAC	12453.73	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.81;SOR=1.638;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr13	99112680	rs4771305	C	T	10278.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=27.12;SOR=1.553;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr13	99112754	rs4772083	TT	GC	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	99115838	rs56325686	TA	T	2145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.910;QD=8.65;ReadPosRankSum=1.063;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:75,173:0.70:248
chr13	99115927	rs2296149	A	G	17409.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=687;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.173;QD=25.64;ReadPosRankSum=-0.157;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:2,677:1.00:679
chr13	99127252	rs9513430	C	G	14587.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,553:1.00:553
chr13	99340037	rs950905	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr13	99354931	rs1768042	C	T	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr13	99356612	rs1339067	A	G	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:77,129:0.63:206
chr13	99361221	rs61087152	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.39;ReadPosRankSum=-1.891;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr13	99361959	rs2297319	G	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:116,149:0.56:265
chr13	99363919	rs6145194	GGTTTT	G	530.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr13	99376181	rs2297322	C	T	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:68,42:0.38:110
chr13	99378668	.	G	A	5761.77	.	AC=1;AF=0.500;AN=2;DP=498;set=Intersection	GT:AD:AF:DP	0/1:208,279:0.57:487
chr13	99404743	rs4646208	T	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr13	99404761	rs4646207	C	T	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:92,47:0.34:139
chr13	99447005	rs812808	T	C	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=3.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=1.501;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:151,87:0.37:238
chr13	99448441	rs9554522	T	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:90,47:0.34:137
chr13	99448608	rs9554523	C	A	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:105,69:0.40:174
chr13	99448623	rs9554524	A	G	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,54:0.43:127
chr13	99449579	rs1289314	T	C	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:306,153:0.33:459
chr13	99449755	rs1289315	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:122,81:0.40:203
chr13	99457552	rs7990741	T	A	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,36:0.38:94
chr13	99459891	rs9557078	A	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-1.956;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:75,34:0.31:109
chr13	99460127	rs61040361	G	A	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:104,133:0.56:237
chr13	99460173	rs772306	T	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,55:0.59:94
chr13	99461532	rs371432796	GTTTTT	G	3072.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:125,83:0.40:208
chr13	99462593	rs2282134	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.507;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.086;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr13	99462609	rs1290519	T	C	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr13	99482030	rs9517459	G	C	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:187,69:0.27:256
chr13	99482135	rs9517460	A	G	410.10	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr13	99483856	rs2296986	C	T	2261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-2.546;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:306,140:0.31:446
chr13	99497760	rs2183093	G	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr13	99498683	rs3842311	TA	T	962.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,66:0.56:117
chr13	99505632	rs9513497	C	T	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:105,183:0.64:288
chr13	99532622	rs6491460	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr13	99534048	rs6491461	G	A	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	99536031	rs9517474	G	A	3356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.96;ReadPosRankSum=-2.399;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:95,164:0.63:259
chr13	99536215	rs2296996	C	T	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.998;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.96;ReadPosRankSum=-1.346;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr13	99536220	rs2296997	A	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.82;ReadPosRankSum=-1.375;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr13	99537202	rs2274641	C	A	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,75:0.66:113
chr13	99537217	rs2274642	G	T	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:48,94:0.66:142
chr13	99537431	rs2026024	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:73,29:0.28:102
chr13	99538711	rs6491465	C	G	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	99538935	rs6491466	C	G	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:77,94:0.55:171
chr13	99540395	rs1928104	A	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr13	99540500	rs2274643	A	G	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:52,81:0.61:133
chr13	99555187	rs35240640	AT	A	1684.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:67,112:0.63:179
chr13	99574524	rs7983462	C	T	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:38,97:0.72:135
chr13	99575775	rs7989935	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr13	99578265	rs7318788	T	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr13	99667982	rs4772168	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr13	99738554	rs117633128	G	A	1669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.854;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:147,92:0.38:239
chr13	99853443	rs7338947	T	G	7103.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr13	99890849	.	G	GT	507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=1.346;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:88,46:0.34:134
chr13	99966516	.	C	CT	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.020;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:15,34:0.69:49
chr13	99970429	rs56695114	CT	C	2068.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.52;QD=20.69;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	99992487	rs1927725	T	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.617;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr13	100199224	rs3751373	C	T	3642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.881;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:126,177:0.58:303
chr13	100201372	rs41280150	G	A	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-0.314;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,42:0.65:65
chr13	100206529	rs9517768	T	C	2697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-0.302;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:108,134:0.55:242
chr13	100258801	rs9517802	G	A	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr13	100258863	rs372340308	CG	C	1776.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr13	100258868	rs367726229	G	A	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr13	100258984	.	G	A	562.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr13	100515161	rs10648017	A	AGACTT	2212.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	100517195	.	C	CTG	3837.73	.	AC=1;AF=0.500;AN=2;DP=301;set=Intersection	GT:AD:AF:DP	0/1:104,183:0.64:287
chr13	100517409	rs7317032	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:56,100:0.64:156
chr13	100518400	rs2390354	T	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	100518580	rs3783185	A	G	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	100523386	rs3742254	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.358;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr13	100537221	rs912283	T	C	12065.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr13	100537232	rs912284	T	C	14649.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,569:1.00:569
chr13	100537376	rs912285	G	A	6815.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr13	100637102	rs9585308	T	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr13	100638392	rs13542	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:121,69:0.36:190
chr13	100807416	rs3215976	T	TA	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.040;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:19,25:0.57:44
chr13	100921056	rs4306370	A	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	100945533	rs9300598	G	A	8696.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr13	100945603	rs8002928	A	G	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:49,80:0.62:129
chr13	100962169	rs16957276	A	G	4406.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:120,215:0.64:335
chr13	101020695	rs9518061	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:105,43:0.29:148
chr13	101020926	rs10508043	T	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr13	101143782	rs4772295	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr13	101144031	rs4772296	A	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr13	101182211	rs3059677	CGGTGG	C	1537.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr13	101184870	rs141151608	G	A	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:84,57:0.40:141
chr13	101264633	rs1572641	C	T	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,48:0.47:102
chr13	101266751	rs370662314	TA	T	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.760;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=3.089;QD=1.58;ReadPosRankSum=-0.314;SOR=1.231;set=HC	GT:AD:AF:DP	0/1:55,26:0.32:81
chr13	101286924	rs1890861	T	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	101286974	rs17475563	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=1.617;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:63,12:0.16:75
chr13	101287340	rs946837	C	T	5352.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:135,247:0.65:382
chr13	101287365	rs946838	T	C	6686.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr13	101288992	rs3803256	C	T	4276.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:160,212:0.57:372
chr13	101289998	rs7985718	C	A	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:111,169:0.60:280
chr13	101294428	rs9585476	C	G	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:37,70:0.65:107
chr13	101308836	rs11315434	AC	A	171.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr13	101316313	rs1298168	C	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr13	101316378	rs1283208	A	G	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:75,106:0.59:181
chr13	101318136	rs945962	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr13	101321067	rs2791680	T	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.403;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr13	101322622	rs1283201	G	C	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:59,107:0.64:166
chr13	101712426	rs2274085	G	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr13	101717980	.	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.510;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr13	101727043	.	CAG	C	1057.73	.	AC=1;AF=0.500;AN=2;DP=415;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:204,64:0.24:268
chr13	101727071	rs112963196	CAG	C	375.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:118,27:0.19:145
chr13	101735026	rs12430032	T	A	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=1.892;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:11,32:0.74:43
chr13	101735211	rs17677552	G	A	4618.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:178,223:0.56:401
chr13	101736075	rs686141	A	G	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-1.480;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:44,96:0.69:140
chr13	101753023	rs113145864	C	CTG	2150.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr13	101753025	rs57703343	GT	G	3468.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	101763429	rs117026043	C	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,54:0.42:129
chr13	101795160	rs660622	C	A	213.18	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr13	101795317	rs673213	A	C	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,70:0.69:102
chr13	101795422	rs661585	A	G	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:126,188:0.60:314
chr13	101890040	rs9518352	A	G	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	102021517	.	A	ATGTGTGTGTGTG	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=39;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.447;QD=22.52;ReadPosRankSum=0.967;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr13	102021552	rs61496806	T	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-0.000;QD=14.89;ReadPosRankSum=0.258;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr13	102025429	rs56313970	T	C	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=0.103;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:30,59:0.66:89
chr13	102030782	rs57317466	AAAAAT	A	166.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr13	102030837	rs59301533	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.78;ReadPosRankSum=2.003;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr13	102106276	rs2297700	G	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:77,34:0.31:111
chr13	102235764	rs370279713	TA	T	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=1.835;QD=4.79;ReadPosRankSum=-1.973;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr13	102344867	rs981073	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	102366742	rs2281990	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr13	102366825	rs2281991	A	G	3491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=0.454;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:105,167:0.61:272
chr13	102368056	rs1436266	G	T	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	103279589	rs16960258	C	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr13	103282643	rs72452045	TGTTG	T	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr13	103286280	rs2274461	T	A	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:94,135:0.59:229
chr13	103286474	rs58545410	C	T	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:88,133:0.60:221
chr13	103286573	rs60670583	C	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr13	103289409	rs9518799	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr13	103292580	rs41281652	T	C	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr13	103292875	rs16960293	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr13	103297435	rs10713633	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.010;QD=0.22;ReadPosRankSum=1.496;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:123,30:0.20:153
chr13	103301537	rs664660	G	T	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	103307322	rs677248	A	G	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:63,126:0.67:189
chr13	103307483	rs672129	G	A	2970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-0.130;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:73,141:0.66:214
chr13	103328660	rs2230856	A	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr13	103346659	rs7981120	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:63,42:0.40:105
chr13	103346806	rs2390760	C	G	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.761;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:161,67:0.29:228
chr13	103382700	rs200239728	C	T	3235.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:368,196:0.35:564
chr13	103383417	rs9554897	T	C	4530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-0.954;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:117,209:0.64:326
chr13	103383497	rs58979683	T	C	6330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=0.462;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:171,296:0.63:467
chr13	103384824	rs9300756	G	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr13	103385015	rs6491707	A	G	11190.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:3,430:0.99:433
chr13	103385299	rs7335290	A	C	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr13	103385798	rs7983175	T	C	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr13	103386116	rs7982465	C	G	11514.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr13	103386283	rs7982670	A	G	12523.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr13	103388220	rs9300758	A	G	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	103388370	rs9518825	C	T	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:99,134:0.58:233
chr13	103391634	rs7322112	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:123,58:0.32:181
chr13	103392741	rs117074021	G	A	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:329,209:0.39:538
chr13	103394003	rs1449707	G	A	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:223,119:0.35:342
chr13	103394613	rs9585986	T	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:192,97:0.34:289
chr13	103394716	rs9585987	T	C	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:112,79:0.41:191
chr13	103395819	rs1375720	C	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	103396716	rs6491708	C	G	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:72,47:0.39:119
chr13	103397009	rs200420958	T	G	4498.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:151,217:0.59:368
chr13	103397583	rs9582626	C	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:293,110:0.27:403
chr13	103397937	rs9300759	T	G	8720.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:177,390:0.69:567
chr13	103400083	rs1026158	G	A	3792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=0.728;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:369,224:0.38:593
chr13	103400729	rs12583104	G	A	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-1.505;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:163,67:0.29:230
chr13	103402522	rs9300760	C	T	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:401,185:0.32:586
chr13	103410782	rs1375719	T	C	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=2.388;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:52,25:0.32:77
chr13	103410914	rs12855785	A	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr13	103418728	rs8054	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr13	103420671	rs5806323	T	TA	1367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.530;QD=31.08;ReadPosRankSum=0.122;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:8,36:0.82:44
chr13	103420680	rs1470654	C	A	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.78;ReadPosRankSum=-0.016;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr13	103420709	.	C	G	704.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.03;ReadPosRankSum=-1.583;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr13	103420710	rs201025930	T	C	704.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.03;ReadPosRankSum=-1.670;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr13	103445609	rs11441956	G	GT	1256.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.91;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	103449202	rs1047740	T	C	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr13	103468958	rs7320687	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.198;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr13	103474031	rs2148449	C	T	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	103484060	rs2181676	G	A	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr13	103491172	rs2281886	G	A	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,67:0.60:111
chr13	103491223	rs7337774	C	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	103491876	rs4771435	A	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr13	103506509	rs1535729	A	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	103511428	rs3918332	G	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	103514091	rs7982448	T	C	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.469;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	103518769	rs6491716	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	103518844	rs3759500	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr13	103527849	rs9514066	G	C	10493.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr13	103527930	rs9514067	G	C	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr13	103528337	rs873601	G	A	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	103698363	rs2301157	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr13	103698630	rs279940	C	T	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr13	103703481	rs279938	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr13	103703579	rs8000956	T	C	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=1.501;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:93,67:0.42:160
chr13	103703662	.	C	A	3781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DP=330;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=1.433;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:134,189:0.59:323
chr13	103705044	rs188096	A	C	17510.77	.	AC=2;AF=1.00;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	1/1:0,694:1.00:694
chr13	106119446	rs2391191	G	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.962;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:37,31:0.46:68
chr13	107145463	rs7995379	G	C	19312.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:0,734:1.00:734
chr13	107145829	rs3742160	A	T	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:151,111:0.42:262
chr13	107145904	rs3742159	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr13	107209378	rs9587157	T	C	3251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=2.367;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:107,159:0.60:266
chr13	107862841	rs3751448	T	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr13	108183631	rs912446	A	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	108881457	rs41308572	T	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr13	108955464	rs1224145	C	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.25;ReadPosRankSum=-0.712;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr13	108959080	rs11381410	A	AT	183.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr13	109282302	rs9284241	T	G	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr13	109311651	rs9587650	A	G	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-0.375;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr13	109365175	rs115079378	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr13	109459020	rs9301323	G	A	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:135,112:0.45:247
chr13	109472601	rs2146327	G	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr13	109472849	rs9521065	A	G	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:88,97:0.52:185
chr13	109472933	rs9514924	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr13	109496928	rs7989802	C	T	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	109550561	rs7322768	A	G	3359.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:87,152:0.64:239
chr13	109661359	rs3825491	C	G	3879.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:326,214:0.40:540
chr13	109700549	rs9521139	G	A	81.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=16.39;ReadPosRankSum=-0.524;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr13	109717928	rs1431267	A	G	5621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=-1.540;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:407,311:0.43:718
chr13	109772897	rs73619919	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr13	109779906	rs3815983	C	T	5640.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:208,261:0.56:469
chr13	109793474	rs28705148	T	C	25481.77	.	AC=2;AF=1.00;AN=2;DB;DP=987;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,974:1.00:974
chr13	109793720	rs7986595	A	C	24382.77	.	AC=2;AF=1.00;AN=2;DB;DP=952;set=Intersection	GT:AD:AF:DP	1/1:1,943:1.00:944
chr13	109831849	rs2038707	G	C	3423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=3.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=1.374;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:216,173:0.44:389
chr13	109832084	rs1033870	G	A	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:117,86:0.42:203
chr13	110408608	rs1865434	C	T	9188.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr13	110434310	rs11618950	G	A	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr13	110435302	rs9583424	T	C	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chr13	110435914	rs12853546	G	A	6342.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:222,308:0.58:530
chr13	110435953	rs4773092	A	G	4406.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:330,243:0.42:573
chr13	110436232	rs3742210	G	A	5978.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:323,304:0.48:627
chr13	110804809	rs650724	G	A	5389.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:248,271:0.52:519
chr13	110807474	rs615742	T	C	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	110807496	rs616089	T	C	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr13	110813709	rs1133219	G	A	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:112,98:0.47:210
chr13	110815673	rs2298240	C	G	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:71,89:0.56:160
chr13	110818598	rs3742207	T	G	6888.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:381,347:0.48:728
chr13	110819457	rs652572	A	G	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.47;ReadPosRankSum=0.099;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:29,41:0.59:70
chr13	110819460	rs1778817	G	A	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.05;ReadPosRankSum=1.102;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:34,42:0.55:76
chr13	110819586	rs589985	G	A	4261.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:218,220:0.50:438
chr13	110821834	rs1838557	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr13	110821844	.	A	AACACAC	1216.37	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr13	110824974	rs2289799	C	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr13	110827574	rs874203	T	A	6718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.25;ReadPosRankSum=1.102;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:122,167:0.58:289
chr13	110827580	rs874204	C	T	6958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.41;ReadPosRankSum=1.004;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:138,187:0.58:325
chr13	110828891	rs1975514	T	C	7910.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:368,397:0.52:765
chr13	110828922	rs1562173	G	A	8415.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:375,419:0.53:794
chr13	110833751	rs112508409	C	CA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-3.205;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:144,32:0.18:176
chr13	110839550	rs536174	T	G	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr13	110843985	rs1373744	T	C	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr13	110844721	rs2241967	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:86,85:0.50:171
chr13	110845314	rs685884	G	A	6425.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr13	110847227	rs505050	G	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	110850770	rs683309	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	110851014	rs496916	G	C	22820.77	.	AC=2;AF=1.00;AN=2;DB;DP=942;set=Intersection	GT:AD:AF:DP	1/1:1,928:1.00:929
chr13	110853695	rs114047868	G	A	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.930;QD=9.95;ReadPosRankSum=-0.376;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:53,59:0.53:112
chr13	110856085	rs648263	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr13	110856094	rs7327728	A	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr13	110857823	rs482757	C	T	5017.77	.	AC=1;AF=0.500;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	0/1:391,274:0.41:665
chr13	110857895	rs677877	A	G	2853.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:232,156:0.40:388
chr13	110859069	rs9588116	G	C	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:139,173:0.55:312
chr13	110859316	.	G	GA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=5.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=0.620;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:103,26:0.20:129
chr13	110859690	rs598819	A	G	5859.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr13	110859743	rs598893	C	T	3516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=0.524;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:301,196:0.39:497
chr13	110861785	rs645114	C	G	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr13	110862268	rs2166207	A	C	1981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-0.713;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:116,103:0.47:219
chr13	110863974	rs3832900	CAAAAT	C	1582.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr13	110864225	rs532625	A	T	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:163,124:0.43:287
chr13	110864396	rs626444	T	C	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr13	110866065	rs3737328	C	T	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr13	110866265	rs9521650	G	A	14388.77	.	AC=1;AF=0.500;AN=2;DB;DP=1288;set=Intersection	GT:AD:AF:DP	0/1:562,710:0.56:1272
chr13	110895092	rs41275104	A	G	4997.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:389,272:0.41:661
chr13	110895150	rs41275106	A	G	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:277,182:0.40:459
chr13	110959131	rs12429420	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr13	110959356	rs9515185	C	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr13	111077197	rs4238272	G	A	3836.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:266,204:0.43:470
chr13	111077400	rs58151684	AT	A	1169.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:49,55:0.53:104
chr13	111077450	rs7326522	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr13	111082157	rs3929758	C	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr13	111091157	rs9521759	C	A,CTCCACA	1896.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.47;MQRankSum=0.334;QD=30.11;ReadPosRankSum=1.409;SOR=1.047;set=HC	GT:AD:AF:DP	1/2:2,22,39:0.35,0.62:63
chr13	111091995	rs7991229	T	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr13	111098017	rs4771680	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr13	111098110	rs7489705	C	T	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:90,68:0.43:158
chr13	111098226	rs4103	C	T	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:143,105:0.42:248
chr13	111098338	rs7988186	A	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	111099057	rs45612833	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr13	111099122	rs7326449	G	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:110,73:0.40:183
chr13	111099338	rs35275552	T	TA	814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.049;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:26,44:0.63:70
chr13	111109129	rs113122708	G	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:64,55:0.46:119
chr13	111109157	rs28502737	G	A	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr13	111109576	.	G	C	1443	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=1;MGOF=17;MMLQ=25;MQ=52.78;NF=66;NR=29;PP=1443;QD=15.5554864479;SC=CCGTGGGGCTGATGCCCTGCG;SbPval=0.63;Source=Platypus;TC=223;TCF=151;TCR=72;TR=95;WE=111109584;WS=111109566;set=Platypus	GT:AD:AF:DP	1/0:128,95:0.43:223
chr13	111109618	.	G	C	2572	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=2;MGOF=18;MMLQ=18;MQ=56.95;NF=104;NR=83;PP=2572;QD=20;SC=CCGTGGGGCTGATGCCCTGCG;SbPval=0.46;Source=Platypus;TC=387;TCF=221;TCR=166;TR=187;WE=111109626;WS=111109608;set=Platypus	GT:AD:AF:DP	1/0:200,187:0.48:387
chr13	111109643	rs112389576	C	T	11951.73	.	AC=1;AF=0.500;AN=2;DB;DP=831;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;QD=14.61;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:431,387:0.47:818
chr13	111109859	rs9515218	A	G	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:303,195:0.39:498
chr13	111109960	rs9515219	T	C	4252.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:330,231:0.41:561
chr13	111110303	rs7319009	T	C	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:87,68:0.44:155
chr13	111110418	rs7325055	G	C	5975.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	0/1:431,321:0.43:752
chr13	111110666	rs7326779	T	C	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.429;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=0.095;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr13	111110674	rs7325334	C	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.420;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=1.022;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr13	111111023	rs9521781	T	C	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:83,78:0.48:161
chr13	111111043	rs9521782	G	A	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:152,116:0.43:268
chr13	111111173	rs7990214	G	A	7781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=1026;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=1.583;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:591,425:0.42:1016
chr13	111111235	rs7990383	G	A	3677.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:281,200:0.42:481
chr13	111114519	rs112262533	C	A	5358.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:431,294:0.41:725
chr13	111115467	rs9521786	G	A	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:113,82:0.42:195
chr13	111115480	rs9515223	C	T	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:80,65:0.45:145
chr13	111117745	rs3803236	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr13	111118221	rs1983932	T	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr13	111118546	rs1927350	T	G	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:77,58:0.43:135
chr13	111118574	rs1927351	A	G	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=0.630;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:40,32:0.44:72
chr13	111118580	rs1927352	G	A	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	111118615	rs1927353	A	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr13	111119296	rs3803232	A	G	5063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=4.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.89;ReadPosRankSum=-2.866;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:149,134:0.47:283
chr13	111119317	rs141090225	G	A	5753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=9.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=0.092;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:174,172:0.50:346
chr13	111130226	rs9559818	G	A	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr13	111130519	rs2281974	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr13	111132699	.	A	C	1823.77	.	AC=1;AF=0.500;AN=2;DP=290;set=Intersection	GT:AD:AF:DP	0/1:179,103:0.37:282
chr13	111132820	rs1475438	G	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:58,76:0.57:134
chr13	111137167	rs1983930	T	C	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	111137240	rs2296853	A	G	2448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.58;ReadPosRankSum=0.260;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:192,131:0.41:323
chr13	111137891	rs11619327	A	G	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr13	111143541	rs35120918	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr13	111153934	rs378601	G	A	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	111154058	rs439831	T	A	13217.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.54;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr13	111154061	rs409858	T	C	13415.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr13	111154159	rs388222	C	T	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:123,99:0.45:222
chr13	111154160	rs2281968	G	A	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:99,123:0.55:222
chr13	111155363	rs406174	G	A	6435.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr13	111155428	rs401316	C	T	14858.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr13	111155711	rs4773198	C	T	7785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=855;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.760;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:423,399:0.49:822
chr13	111155773	rs438758	T	C	10126.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.53;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr13	111155773	.	TGGGGCG	CGGGGCA,CGGGGCG	1428	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=18;MMLQ=23;MQ=59.84;NF=25,66;NR=50,116;PP=1161,1428;QD=16.1929049982;SC=CTGGACCCACTGGGGCGGTGG;SbPval=0.66;Source=Platypus;TC=182;TCF=66;TCR=116;TR=75,182;WE=111155787;WS=111155763;set=Platypus	GT:AF:DP	0/1:0.41:182
chr13	111155779	rs4773199	G	A	2576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=1.332;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:139,125:0.47:264
chr13	111156021	rs4773200	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr13	111156047	rs9284254	C	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr13	111156153	rs9301460	G	A	5242.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:283,272:0.49:555
chr13	111156499	rs4771683	C	T	9832.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:1,388:1.00:389
chr13	111156773	rs4771684	A	G	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	111158874	rs445348	A	G	21390.77	.	AC=2;AF=1.00;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	1/1:4,853:1.00:857
chr13	111160304	rs391859	G	A	3553.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:208,182:0.47:390
chr13	111164614	rs422733	T	C	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.024;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.080;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.725;QD=10.86;ReadPosRankSum=-1.162;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:43,30:0.41:73
chr13	111164628	rs3074455	TAA	T	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.246;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.800;QD=11.07;ReadPosRankSum=-1.619;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr13	111176393	rs419244	A	G	24972.77	.	AC=2;AF=1.00;AN=2;DB;DP=974;set=Intersection	GT:AD:AF:DP	1/1:1,962:1.00:963
chr13	111176519	rs375814	G	T	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:135,129:0.49:264
chr13	111277810	rs330561	C	A	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	111279817	rs3742191	A	G	3920.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:183,195:0.52:378
chr13	111287221	rs3832897	G	GAC	1197.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr13	111293489	rs144796593	A	ATGC	1578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.63;ReadPosRankSum=1.286;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:32,41:0.56:73
chr13	111293499	rs61970495	G	A	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.20;ReadPosRankSum=0.074;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:29,39:0.57:68
chr13	111293585	rs10709696	TG	T	767.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	111294920	rs11414164	G	GC	36777.73	.	AC=2;AF=1.00;AN=2;DB;DP=1288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=32.09;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,1146:1.00:1146
chr13	111296335	rs3818497	T	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr13	111298392	rs436462	A	G	7076.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:322,358:0.53:680
chr13	111299718	rs2296661	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr13	111315249	rs7989346	G	A	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:135,110:0.45:245
chr13	111315299	rs4622384	T	C	4873.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:277,257:0.48:534
chr13	111315405	rs7993933	G	A	10188.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr13	111315489	rs2296659	A	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	111315506	rs376834	A	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	111319754	rs4628819	T	C	18379.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr13	111319884	rs9521884	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:53,44:0.45:97
chr13	111329610	.	AGA	GGG	925	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=4;MGOF=8;MMLQ=23;MQ=58.17;NF=3;NR=20;PP=925;QD=42.5420815157;SC=CCCCCACCACAGAGACCCAGT;SbPval=0.94;Source=Platypus;TC=47;TCF=12;TCR=35;TR=23;WE=111329620;WS=111329600;set=Platypus	GT:AD:AF:DP	0/1:24,23:0.49:47
chr13	111340039	.	G	GA	531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-1.198;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:25,47:0.65:72
chr13	111340101	rs72661692	T	A	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:105,118:0.53:223
chr13	111340342	rs2304767	G	A	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:93,84:0.47:177
chr13	111358488	rs3818496	G	A	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:82,66:0.45:148
chr13	111365104	rs12875067	A	G	4673.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:401,259:0.39:660
chr13	111368164	rs7338333	T	G	9990.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr13	111368316	rs9555726	C	T	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=-0.221;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:124,101:0.45:225
chr13	111545198	rs10664568	A	AGT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=0.476;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr13	111555680	rs111812847	GTTTTAA	G	398.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr13	111562803	rs35930208	T	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr13	111566989	rs59070384	A	G	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr13	111567039	rs56924528	G	C	11841.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.915;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=0.186;SOR=0.407;set=HC	GT:AD:AF:DP	1/1:1,460:1.00:461
chr13	111806245	rs61966721	A	G	44493.77	.	AC=2;AF=1.00;AN=2;DB;DP=1732;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.694;set=HC	GT:AD:AF:DP	1/1:0,1721:1.00:1721
chr13	111870037	rs2296354	T	C	12166.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:2,478:1.00:480
chr13	111893709	rs942655	C	T	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr13	111933098	rs2296353	C	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	111953299	.	C	CT	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=3.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-1.107;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:56,34:0.38:90
chr13	111953903	rs3742181	T	C	9008.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr13	111955465	rs1555751	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	111968432	rs12560420	A	G	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	111968680	rs7991693	C	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	111973098	rs12855715	T	C	6014.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr13	111973342	rs57892141	T	TG	1493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=10.557;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=19.92;ReadPosRankSum=0.087;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:12,63:0.84:75
chr13	111973353	rs56975726	A	G	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.03;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	111980478	rs2479955	A	G	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=2.326;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	111980537	rs1359428	C	T	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr13	111991463	rs9522188	G	C	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	112278338	rs7992732	G	A	6284.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr13	112297362	rs9560147	C	T	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:87,144:0.62:231
chr13	112297403	rs8000950	C	T	3730.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:362,212:0.37:574
chr13	112297413	rs9560148	C	T	9255.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:252,435:0.63:687
chr13	112324912	rs1105513	T	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	113030981	rs80217834	A	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr13	113033010	rs76491939	A	C	2238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=1.212;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:142,119:0.46:261
chr13	113052388	rs2296895	A	G	8076.77	.	AC=1;AF=0.500;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	0/1:490,406:0.45:896
chr13	113053470	rs10816	T	A	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:198,165:0.45:363
chr13	113055295	rs3742225	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr13	113153114	rs9549532	T	C	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr13	113158861	.	CAT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.193;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr13	113201852	.	ATGGGAAAGTCGCGCGTGGGAAAGTCGCGCG	A,GTGGGAAAGTCGCGCGTGGGAAAGTCGCGCG	1044.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=52;set=Intersection	GT:AF:DP	1/2:0.69,0.26:35
chr13	113219386	rs113157783	A	G	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:218,166:0.43:384
chr13	113242185	rs113012367	G	T	7071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.596;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:445,373:0.46:818
chr13	113333684	rs7338610	C	T	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	113344803	rs3742227	G	A	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.712;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:41,48:0.54:89
chr13	113439586	rs11616475	G	T	3510.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:259,189:0.42:448
chr13	113465109	rs9577843	G	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:67,75:0.53:142
chr13	113473598	rs34166778	CAT	C	10779.73	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:328,282:0.46:610
chr13	113478654	rs7323586	G	C	4859.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:220,244:0.53:464
chr13	113479813	rs9549564	G	A	3345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=0.273;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:149,167:0.53:316
chr13	113479820	rs368865	A	G	10659.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.89;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr13	113487043	rs2297223	C	T	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=1.205;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:52,30:0.37:82
chr13	113496566	rs946006	C	G	2163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-1.237;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:113,104:0.48:217
chr13	113508537	rs11424633	A	AT	2530.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:130,102:0.44:232
chr13	113508839	rs9549573	G	C	9493.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr13	113512004	rs7325522	C	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	113513682	rs10492684	C	G	5512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-1.428;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:290,280:0.49:570
chr13	113525952	rs1765767	A	G	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	113527967	rs1320525	G	A	10158.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr13	113536132	rs1290177	T	C	25553.77	.	AC=2;AF=1.00;AN=2;DB;DP=992;set=Intersection	GT:AD:AF:DP	1/1:0,982:1.00:982
chr13	113563351	rs2993328	A	G	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	113563650	rs12873277	T	C	10815.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr13	113639862	rs2993287	G	A	2565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-2.086;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:99,125:0.56:224
chr13	113639869	rs3011543	A	G	8423.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=1.321;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr13	113639872	rs3011542	A	G	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.71;SOR=1.365;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr13	113656216	rs7986677	C	T	1786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-0.493;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:164,100:0.38:264
chr13	113681243	rs9549343	C	A	5553.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:285,282:0.50:567
chr13	113699488	rs3814266	T	C	7329.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:409,373:0.48:782
chr13	113717022	rs7982214	G	A	4483.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	113735335	rs61966406	G	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr13	113735390	rs494129	T	C	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:104,98:0.49:202
chr13	113738175	rs491455	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr13	113739518	rs546818	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr13	113740602	rs2873281	G	A	9816.77	.	AC=1;AF=0.500;AN=2;DB;DP=856;set=Intersection	GT:AD:AF:DP	0/1:369,471:0.56:840
chr13	113740706	rs1745949	A	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	113741590	rs9604022	G	A	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr13	113741851	rs514181	C	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:73,67:0.48:140
chr13	113742595	rs9324220	C	T	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:98,87:0.47:185
chr13	113742805	rs7986589	C	G	27750.77	.	AC=2;AF=1.00;AN=2;DB;DP=1090;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,1079:1.00:1079
chr13	113743768	.	T	C	338	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=23;MQ=58.27;NF=18;NR=3;PP=338;QD=17.7510101213;SC=TCTCATCCAGTCCGTCCGGGT;SbPval=0.68;Source=Platypus;TC=48;TCF=40;TCR=8;TR=21;WE=113743776;WS=113743758;set=Platypus	GT:AD:AF:DP	1/0:27,21:0.44:48
chr13	113744139	rs4907483	G	A	10472.77	.	AC=1;AF=0.500;AN=2;DB;DP=1169;set=Intersection	GT:AD:AF:DP	0/1:599,546:0.48:1145
chr13	113744433	rs139940844	G	A	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:96,146:0.60:242
chr13	113745611	rs4907485	T	G	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr13	113748690	rs7327099	C	T	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:112,80:0.42:192
chr13	113749475	rs2146752	G	A	3292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=2.070;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:165,160:0.49:325
chr13	113750586	rs12855893	G	A	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:88,97:0.52:185
chr13	113776947	rs563964	T	C	2009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.14;ReadPosRankSum=0.630;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:54,51:0.49:105
chr13	113776947	.	TGC	CGA	1468	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=1;HapScore=2;MGOF=29;MMLQ=23;MQ=60.0;NF=32;NR=4;PP=1468;QD=42.262996524;SC=GATGAGGTTCTGCGGGGCCTC;SbPval=0.9;Source=Platypus;TC=90;TCF=73;TCR=17;TR=36;WE=113776957;WS=113776941;set=Platypus	GT:AD:AF:DP	1/0:54,36:0.40:90
chr13	113776949	rs3211717	C	A	2009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=1.210;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:64,56:0.47:120
chr13	113792754	rs2251102	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	113792893	rs2026160	C	A	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	113801737	rs5960	C	T	8784.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr13	113801843	rs2031184	A	G	8271.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr13	113812962	rs2273971	G	A	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	113815328	rs41286612	G	A	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-0.247;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:44,32:0.42:76
chr13	113817218	rs72058337	TCCTCCTCCTGCTCAGGTCCCCATTCCTGTCACCACCCCCAC	T	15047.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.861;ClippingRankSum=0.000;DB;DP=1140;ExcessHet=3.0103;FS=12.522;MLEAC=1;MLEAF=0.500;MQ=61.72;MQRankSum=16.732;QD=13.91;ReadPosRankSum=3.819;SOR=1.489;set=HC	GT:AD:AF:DP	0/1:634,448:0.41:1082
chr13	113818708	rs3024731	A	T	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	113818817	rs45606038	T	C,TC	9917.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=29.87;SOR=0.869;set=HC	GT:AD:AF:DP	1/2:0,53,279:0.16,0.84:332
chr13	113818900	rs564081	A	G	8244.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr13	113833499	rs486407	G	A	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	113839747	rs515863	C	T	3290.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:183,168:0.48:351
chr13	113852425	rs546686	C	T	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr13	113854560	rs3751411	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	113854600	rs3751412	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	113854715	rs3751413	C	T	12697.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr13	113854965	rs35769549	T	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr13	113862801	rs9549692	G	A	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr13	113882221	rs34413442	C	CA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-1.311;QD=4.80;ReadPosRankSum=-1.487;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:24,18:0.43:42
chr13	113888201	rs2146408	T	C	6817.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr13	113889474	rs2287250	C	T	20545.77	.	AC=2;AF=1.00;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	1/1:0,798:1.00:798
chr13	113891075	rs2287253	G	A	5045.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr13	113899004	rs3932499	C	A	893.84	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr13	113900197	rs2302756	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	113917767	rs4907602	T	C	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	113951722	rs7983578	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.63;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	113965176	rs9577503	C	A	9135.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr13	113978969	rs912010	G	A	4193.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	113979880	rs55866528	G	A	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:64,100:0.61:164
chr13	113999051	rs4406954	C	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.94;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	114018038	rs9549753	C	A	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	114083421	rs148154052	A	AAG	6469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.160;QD=18.33;ReadPosRankSum=-2.129;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:153,200:0.57:353
chr13	114087997	rs12874568	T	C	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr13	114088341	rs59659705	T	TG	395.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr13	114112287	rs3814254	C	A	4150.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:232,215:0.48:447
chr13	114113596	rs367964410	G	A	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:225,178:0.44:403
chr13	114128382	rs74378879	G	A	6678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-0.897;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:401,352:0.47:753
chr13	114138107	rs41288602	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr13	114144842	rs2490953	T	C	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:169,166:0.50:335
chr13	114150107	rs11164135	C	T	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:173,125:0.42:298
chr13	114150356	.	GGA	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-3.570;QD=0.82;ReadPosRankSum=-1.539;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:35,5:0.12:40
chr13	114155965	rs2490958	G	A	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:86,69:0.45:155
chr13	114174798	rs11415817	C	CA	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=6.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.519;SOR=2.876;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr13	114175038	rs7319493	G	A	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:209,160:0.43:369
chr13	114175109	rs12430718	C	G	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr13	114188291	rs2260722	A	G	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=1.644;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:90,68:0.43:158
chr13	114201576	rs12876871	T	A	3954.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:161,199:0.55:360
chr13	114201742	rs2259387	T	C	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,52:0.42:123
chr13	114202532	rs12428641	T	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:110,59:0.35:169
chr13	114202549	rs12431354	C	G	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:147,87:0.37:234
chr13	114202560	rs12429311	G	A	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:159,99:0.38:258
chr13	114202575	rs2259398	T	C	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:184,111:0.38:295
chr13	114240067	rs113638790	CT	C	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.119;QD=7.50;ReadPosRankSum=2.484;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:18,41:0.69:59
chr13	114303764	rs17852631	C	T	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:93,107:0.54:200
chr13	114309226	rs11164142	G	A	9965.77	.	AC=1;AF=0.500;AN=2;DB;DP=1057;set=Intersection	GT:AD:AF:DP	0/1:541,510:0.49:1051
chr13	114312354	rs9285616	T	G	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,304:0.99:306
chr13	114312605	rs58459344	G	GA	734.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.418;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=12.011;MLEAC=1;MLEAF=0.500;MQ=62.46;MQRankSum=7.614;QD=10.20;ReadPosRankSum=-0.777;SOR=2.171;set=HC	GT:AD:AF:DP	0/1:50,22:0.31:72
chr13	114312606	rs58758822	T	G	743.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.311;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=12.011;MLEAC=1;MLEAF=0.500;MQ=62.52;MQRankSum=7.614;QD=10.33;ReadPosRankSum=-0.997;SOR=2.171;set=HC	GT:AD:AF:DP	0/1:50,22:0.31:72
chr13	114322289	rs9796035	A	G	9298.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr13	114322437	.	C	T	2327.77	.	AC=1;AF=0.500;AN=2;DP=227;set=Intersection	GT:AD:AF:DP	0/1:103,116:0.53:219
chr13	114323997	rs9796234	T	C	10841.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr13	114498034	rs9577895	G	A	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	114498362	rs28653123	T	C	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	114502416	rs7400029	T	C	5398.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	114503983	.	GACCCCTATATCTACACCTGAGGGAGGTGAGGGGCGCTGGGA	G	2762	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=3;HapScore=1;MGOF=46;MMLQ=24;MQ=61.66;NF=1;NR=25;PP=2762;QD=20;SC=GGGCGCTGGGGACCCCTATAT;SbPval=0.57;Source=Platypus;TC=31;TCF=1;TCR=30;TR=26;WE=114504031;WS=114503973;set=Platypus	GT:AD:AF:DP	1/0:5,26:0.84:31
chr13	114507836	rs7323732	A	G	24246.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=997;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=-2.193;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:4,948:1.00:952
chr13	114507840	rs7332019	G	A	44526.77	.	AC=2;AF=1.00;AN=2;DB;DP=1078;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.40;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,1026:1.00:1026
chr13	114514918	rs34217684	T	A	2446.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.46;ReadPosRankSum=-0.855;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:5,109:0.96:114
chr13	114537517	rs8191974	C	T	2680.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:160,137:0.46:297
chr13	114620051	rs11259844	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=0.196;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr13	114622374	rs7993591	C	T	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:171,157:0.48:328
chr13	114622597	rs9604529	A	G	10550.77	.	AC=1;AF=0.500;AN=2;DB;DP=1153;set=Intersection	GT:AD:AF:DP	0/1:578,539:0.48:1117
chr13	114623782	rs9604524	C	T	10337.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:451,499:0.53:950
chr13	114623821	rs41284486	G	A	12891.77	.	AC=1;AF=0.500;AN=2;DB;DP=1308;set=Intersection	GT:AD:AF:DP	0/1:647,652:0.50:1299
chr13	114623880	rs7399982	G	A	40140.77	.	AC=2;AF=1.00;AN=2;DB;DP=1616;set=Intersection	GT:AD:AF:DP	1/1:2,1533:1.00:1535
chr13	114748709	rs11147333	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr13	114751359	rs10781677	A	G	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,57:0.46:123
chr13	114758112	rs3737052	G	C	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:138,119:0.46:257
chr13	114761979	rs61967993	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr13	114772899	.	CCCTCCTGCCCTGCCGGACACCACCTTACCCTTCT	C	1607	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=1;MGOF=56;MMLQ=22;MQ=61.82;NF=46;NR=68;PP=1607;QD=14.3859649123;SC=TACCCTTCTCCCCTCCTGCCC;SbPval=0.66;Source=Platypus;TC=126;TCF=54;TCR=72;TR=114;WE=114772941;WS=114772887;set=Platypus	GT:AD:AF:DP	0/1:12,114:0.90:126
chr13	114773126	rs9562086	C	T	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:92,121:0.57:213
chr13	114773188	rs61971856	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr13	114774813	rs6560943	C	T	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr13	114774952	rs41291211	C	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:236,144:0.38:380
chr13	114774991	rs41291213	C	T	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:175,101:0.37:276
chr13	114778561	rs28714290	C	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr13	114778593	rs7322518	C	T	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:60,90:0.60:150
chr13	114778859	rs146849472	C	CTCTCCCTCTCTCTG	2729.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	114780648	rs2274719	A	C	14615.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr13	114780764	rs2274717	A	G	16396.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,626:1.00:626
chr13	114781579	rs61973864	G	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr13	114781868	rs2274716	G	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr13	114783444	rs7986543	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	114783504	rs9525319	G	A	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:69,79:0.53:148
chr13	114784122	rs3818624	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr13	114784464	rs41291223	C	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr13	114787031	rs2274713	T	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	114787091	rs9525206	G	A	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr13	114789571	rs61973867	G	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr13	114792842	rs3829340	C	T	12957.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,502:1.00:502
chr13	114793486	rs41315962	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:110,87:0.44:197
chr13	114795094	.	T	C	639	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=4;HapScore=1;MGOF=28;MMLQ=23;MQ=58.73;NF=27;NR=3;PP=639;QD=22.4590404182;SC=ACCTCTAAAATGGCGTCATCC;SbPval=0.57;Source=Platypus;TC=30;TCF=27;TCR=3;TR=30;WE=114795115;WS=114795084;set=Platypus	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	114795107	.	GT	G	1282	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=1;HapScore=1;MGOF=28;MMLQ=26;MQ=59.89;NF=19;NR=13;PP=1282;QD=41.09375;SC=CGTCATCCTGGTGGGCCAGGA;SbPval=0.65;Source=Platypus;TC=35;TCF=20;TCR=15;TR=32;WE=114795115;WS=114795084;set=Platypus	GT:AD:AF:DP	1/1:3,32:0.91:35
chr13	114806741	rs9525346	C	A	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr13	114817659	rs9525355	G	T	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:186,145:0.44:331
chr13	114817751	rs9525356	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr13	114839462	rs41291225	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr13	115010254	rs3211416	C	T	8344.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:2,322:0.99:324
chr13	115011550	rs370057318	GT	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=0.723;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr13	115015966	rs59513608	C	CA	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.743;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:100,36:0.26:136
chr13	115039246	.	CA	C	187	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=12;HapScore=3;MGOF=39;MMLQ=26;MQ=59.91;NF=4;NR=8;PP=187;QD=16.0833333333;SC=GCCTCCATCTCAAAAAAAAAA;SbPval=0.5;Source=Platypus;TC=27;TCF=8;TCR=19;TR=12;WE=115039254;WS=115039236;set=Platypus	GT:AD:AF:DP	0/1:15,12:0.44:27
chr13	115039275	.	TA	T	159	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=11;HapScore=3;MGOF=29;MMLQ=27;MQ=60.03;NF=2;NR=10;PP=159;QD=14.0;SC=ACTTTATTGTTAAAAAAAAAA;SbPval=0.78;Source=Platypus;TC=35;TCF=8;TCR=27;TR=12;WE=115039283;WS=115039265;set=Platypus	GT:AD:AF:DP	0/1:23,12:0.34:35
chr13	115039393	rs17291675	C	T	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:107,95:0.47:202
chr13	115047700	rs9590410	A	T	9996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=1042;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-0.365;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:515,517:0.50:1032
chr13	115064542	rs2701318	T	C	4086.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:251,219:0.47:470
chr13	115089730	.	G	T	6710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DP=726;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-0.620;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:374,344:0.48:718
chr13	115091073	rs117710037	G	T	3858.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:220,190:0.46:410
chr14	19685269	rs376856717	C	T	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.30;MQRankSum=-0.891;QD=12.13;ReadPosRankSum=-0.525;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr14	19685446	rs370265762	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.49;MQRankSum=1.701;QD=11.15;ReadPosRankSum=-2.166;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr14	19685516	.	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.65;MQRankSum=-0.239;QD=11.93;ReadPosRankSum=0.351;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr14	20201972	rs4391979	A	C	8754.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr14	20202040	rs8011997	T	A	6999.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr14	20216298	rs12896533	T	C	25687.77	.	AC=2;AF=1.00;AN=2;DB;DP=999;set=Intersection	GT:AD:AF:DP	1/1:0,986:1.00:986
chr14	20248828	rs2635535	C	T	23454.77	.	AC=1;AF=0.500;AN=2;DB;DP=1860;set=Intersection	GT:AD:AF:DP	0/1:713,1123:0.61:1836
chr14	20249176	rs2815960	G	A	16514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=1249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-1.333;QD=13.44;ReadPosRankSum=-0.185;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:461,768:0.62:1229
chr14	20249456	rs2815959	G	A	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:59,88:0.60:147
chr14	20264593	rs140800899	G	C	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:225,108:0.32:333
chr14	20295627	rs72663752	C	G	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:299,149:0.33:448
chr14	20344373	.	CTTT	C	1271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=32.798;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=13.11;ReadPosRankSum=1.306;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:29,68:0.70:97
chr14	20345346	rs12883767	A	T	1255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-2.225;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:80,66:0.45:146
chr14	20403909	rs2792148	T	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-1.158;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:517,92:0.15:609
chr14	20404077	.	C	CT	3660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DP=982;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.820;QD=3.94;ReadPosRankSum=0.721;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:674,255:0.27:929
chr14	20404091	rs12885778	G	A	5776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=946;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=1.456;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:608,336:0.36:944
chr14	20404614	rs34608158	C	A	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:334,161:0.33:495
chr14	20404735	rs34394400	C	T	3665.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:407,214:0.34:621
chr14	20404736	rs2792146	G	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=1.129;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:513,91:0.15:604
chr14	20404767	rs2792145	A	G	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-1.235;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:362,61:0.14:423
chr14	20404874	rs2792144	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.931;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:80,15:0.16:95
chr14	20444490	rs11158071	C	T	14560.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.82;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,564:1.00:564
chr14	20470399	rs7493807	G	A	10845.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr14	20482471	rs12590785	C	T	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	20482919	rs17308108	A	C	5540.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:132,259:0.66:391
chr14	20501962	rs2775261	G	C	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	20502120	rs17277032	C	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:62,25:0.29:87
chr14	20528207	rs1958715	G	A	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=2.714;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr14	20528321	rs1958716	A	G	4906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.153;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.893;QD=15.33;ReadPosRankSum=-2.421;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:97,223:0.70:320
chr14	20528359	rs1959630	G	T	16576.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=39.94;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,415:1.00:415
chr14	20528359	.	GTCA	TTCA,TTCG	2568	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=99;MMLQ=24;MQ=60.11;NF=109,86;NR=92,71;PP=397,2568;QD=2.14811548531;SC=TGACATGTAGGTCAACCCTTC;SbPval=0.6;Source=Platypus;TC=204;TCF=109;TCR=95;TR=201,157;WE=20528370;WS=20528349;set=Platypus	GT:AF:DP	0/1:0.99:204
chr14	20528362	rs1958717	A	G	6626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.798;QD=15.70;ReadPosRankSum=0.433;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:109,313:0.74:422
chr14	20528448	rs112192573	TCATAGATTTGCTCACTGAC	T	10069.73	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:183,256:0.58:439
chr14	20528505	rs2775253	T	A	7557.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:136,216:0.61:352
chr14	20528528	rs2775254	G	A	7401.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:116,204:0.64:320
chr14	20529019	rs1959629	C	T	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:70,109:0.61:179
chr14	20529043	rs1959628	C	G	3481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.85;ReadPosRankSum=-0.286;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:57,89:0.61:146
chr14	20529177	rs1959627	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=-1.383;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr14	20586042	rs8005245	G	C	1930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-1.980;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:351,132:0.27:483
chr14	20586432	rs9323534	C	T	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=3.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.299;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:255,108:0.30:363
chr14	20642034	rs7143334	A	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr14	20665790	rs4981822	T	A	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:304,127:0.29:431
chr14	20665840	rs4981088	G	A	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:285,107:0.27:392
chr14	20665887	rs4981823	G	C	7909.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,298:0.99:300
chr14	20666175	rs55781225	C	CA	2272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.474;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.896;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:434,159:0.27:593
chr14	20666556	rs2318886	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr14	20666587	rs139162797	TA	T	272.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr14	20666623	rs2318887	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.700;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr14	20692188	rs12891553	T	C	6352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.753;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:138,294:0.68:432
chr14	20692291	rs34693535	C	T	5863.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:116,275:0.70:391
chr14	20692453	rs17211285	G	T	3859.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:100,182:0.65:282
chr14	20692574	rs17277221	T	C	5162.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:97,234:0.71:331
chr14	20692643	rs17277228	T	C	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:100,204:0.67:304
chr14	20692999	rs11851950	T	G	175.18	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr14	20697600	rs12434822	T	G	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-0.769;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:170,82:0.33:252
chr14	20698068	rs4981844	G	T	5697.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:151,263:0.64:414
chr14	20698239	rs1953558	T	C	4132.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:84,178:0.68:262
chr14	20698298	rs1953559	T	G	5676.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:126,245:0.66:371
chr14	20698504	rs1953560	G	A	4297.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:130,195:0.60:325
chr14	20710906	rs17108372	G	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr14	20711852	rs17277270	C	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:68,102:0.60:170
chr14	20763446	rs1953551	T	C	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	20763716	rs72671250	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.037;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr14	20767618	rs2318864	G	A	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr14	20767706	rs945459	C	T	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	20769870	rs3825766	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	20770036	rs3742945	T	C	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	20784121	rs74717577	AAGAG	A	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.027;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr14	20784718	rs1132644	G	T	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	20788652	rs11292211	TA	T	97.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr14	20814865	rs79030532	A	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr14	20815013	rs1713430	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:146,49:0.25:195
chr14	20820537	rs1760919	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr14	20823052	rs3093926	G	A	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:140,75:0.35:215
chr14	20824181	rs3093930	T	C	3163.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:78,151:0.66:229
chr14	20824859	rs878156	T	C	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=1.335;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:111,45:0.29:156
chr14	20825965	rs2700	A	C	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,54:0.73:74
chr14	20836923	.	G	GCA,GCACACACACA	573.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.85;MQRankSum=0.723;QD=18.51;ReadPosRankSum=0.840;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:7,17,7:0.55,0.23:31
chr14	20837701	rs938886	G	C	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	20841162	rs1760909	C	T	6194.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	20841313	rs1713448	G	A	10119.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr14	20841707	rs1713449	C	T	12361.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr14	20843889	rs1760908	G	A	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	20847202	rs938887	A	G	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	20850014	rs1713455	G	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,71:0.70:102
chr14	20850093	rs1713456	C	T	5897.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:108,268:0.71:376
chr14	20851839	rs112044157	GA	G	2194.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:64,133:0.68:197
chr14	20851840	rs2297614	A	G	907.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:143,64:0.31:207
chr14	20852029	rs1760904	A	G	9276.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr14	20852770	rs1713458	G	T	6417.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:116,300:0.72:416
chr14	20852817	rs1760903	G	A	9916.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr14	20854734	rs945011	A	G	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	20857306	rs201527652	T	TA	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.769;QD=5.91;ReadPosRankSum=-0.925;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr14	20859013	rs872072	G	A	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:99,162:0.62:261
chr14	20863677	rs2228036	C	A	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	20869819	rs2297612	A	T	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	20896857	rs7140768	C	T	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr14	20897064	rs7145318	C	T	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:244,114:0.32:358
chr14	20898308	rs17242648	C	T	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:232,112:0.33:344
chr14	20903349	rs1713408	T	C	12024.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,464:1.00:464
chr14	20916249	rs2275008	T	C	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.746;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:222,91:0.29:313
chr14	20916958	rs938883	T	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:148,64:0.30:212
chr14	20916987	rs938882	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:123,62:0.34:185
chr14	20917442	rs938881	A	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.373;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:153,52:0.25:205
chr14	20919623	rs3120067	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=1.429;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr14	20920250	rs2275007	T	C	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-0.125;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:44,22:0.33:66
chr14	20920340	rs2275006	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr14	20920360	rs3215948	A	AG	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=2.393;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr14	20920749	rs1878703	C	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=0.444;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr14	20925154	rs1130409	T	G	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.713;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:189,67:0.26:256
chr14	20978531	rs2319198	G	A	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	21024605	rs8014474	G	A	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=2.177;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:109,34:0.24:143
chr14	21024619	rs1243647	A	G	4954.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	21024786	rs12590446	A	G	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.423;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.131;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:136,70:0.34:206
chr14	21025220	rs79068517	T	C	3288.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:79,157:0.67:236
chr14	21026773	rs891297	C	T	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:47,98:0.68:145
chr14	21052259	rs1429539	T	C	1553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=3.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.635;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:235,99:0.30:334
chr14	21058337	rs4981259	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.54;ReadPosRankSum=0.328;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr14	21058425	rs3827902	G	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=1.367;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:37,26:0.41:63
chr14	21074397	rs34721081	G	A	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:93,157:0.63:250
chr14	21074427	rs75294609	C	A	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:75,111:0.60:186
chr14	21108748	rs11621507	G	A	430.78	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.223;QD=35.90;ReadPosRankSum=-0.380;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr14	21108748	.	GC	AT	411	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5013;HP=2;HapScore=2;MGOF=29;MMLQ=28;MQ=58.9;NF=8;NR=1;PP=411;QD=51.6075416514;SC=AGCTGAGATCGCGCCACTGCA;SbPval=0.6;Source=Platypus;TC=10;TCF=9;TCR=1;TR=9;WE=21108757;WS=21108741;set=Platypus	GT:AD:AF:DP	1/0:1,9:0.90:10
chr14	21108749	rs11621774	C	T	430.78	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.223;QD=35.90;ReadPosRankSum=-0.380;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr14	21109141	rs17277522	C	T	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:200,90:0.31:290
chr14	21109170	rs11628297	T	A	8806.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr14	21109278	rs11627438	A	T	5316.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:104,237:0.70:341
chr14	21109385	rs11622969	C	T	6942.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:120,321:0.73:441
chr14	21109505	rs72659934	G	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:266,108:0.29:374
chr14	21109671	rs11627574	A	G	4421.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:109,211:0.66:320
chr14	21109726	rs11622794	G	A	3988.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:84,185:0.69:269
chr14	21109859	rs11156622	T	C	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr14	21215692	rs10136680	C	T	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	21215728	rs10135976	G	C	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	21215923	rs34552133	G	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.712;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:134,46:0.26:180
chr14	21215997	rs11847654	C	T	1882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=17.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-1.290;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:83,108:0.57:191
chr14	21238318	rs3827905	G	A	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	21238798	rs3827907	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr14	21250124	rs1045922	G	A	4925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-0.216;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:103,225:0.69:328
chr14	21250212	rs34972223	T	C	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:65,143:0.69:208
chr14	21250366	rs7156801	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	21360216	rs2073342	C	G	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:82,159:0.66:241
chr14	21387994	rs10459477	A	G	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:77,187:0.71:264
chr14	21388266	rs3748340	G	C	9127.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:196,418:0.68:614
chr14	21388302	rs3748341	G	A	9209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-1.745;QD=14.08;ReadPosRankSum=-0.871;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:217,437:0.67:654
chr14	21458131	rs2741733	G	A	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	21458320	rs147038155	CCCCG	C	11444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.976;QD=26.68;ReadPosRankSum=2.798;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:139,290:0.68:429
chr14	21460902	rs2741738	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr14	21461502	rs2783779	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr14	21463430	rs2741739	G	T	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr14	21463474	rs2783801	G	A	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	21467913	rs2234632	T	G	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:40,96:0.71:136
chr14	21468156	rs2149666	T	G	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr14	21469151	rs2234636	T	C	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr14	21486054	rs1243444	T	C	5146.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:113,239:0.68:352
chr14	21486137	rs1243445	G	C	13122.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr14	21486442	rs1243446	A	G	7022.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:142,320:0.69:462
chr14	21488046	rs1243448	G	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	21488452	rs11325826	CA	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.218;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr14	21490125	rs1243449	A	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	21491322	rs1243450	C	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.988;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:112,33:0.23:145
chr14	21500121	rs9624	G	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.564;QD=2.97;ReadPosRankSum=0.228;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:158,48:0.23:206
chr14	21500395	rs1243462	A	G	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	21500411	rs3818613	C	A	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:37,91:0.71:128
chr14	21500426	rs1754340	G	A	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	21500455	rs3818615	T	A	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:75,135:0.64:210
chr14	21500597	rs3818616	C	T	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:58,128:0.69:186
chr14	21501049	rs1952525	G	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	21503743	rs1243463	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr14	21504447	rs1243464	A	G	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	21511458	rs1263872	G	C	24074.77	.	AC=2;AF=1.00;AN=2;DB;DP=941;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.83;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,932:1.00:932
chr14	21511497	rs1243469	C	T	18562.77	.	AC=2;AF=1.00;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr14	21526044	rs12435011	T	C	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	21526079	rs12437266	C	T	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr14	21542037	rs4982405	C	T	9356.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr14	21543242	.	A	G	692.77	.	AC=1;AF=0.500;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr14	21544056	rs7140850	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	21544842	rs11483416	T	TG	5162.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=31.67;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	21549893	rs7143633	G	C	9053.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr14	21551058	rs1958395	G	A	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	21551069	rs1958396	T	C	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	21555066	.	G	GA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.669;QD=0.65;ReadPosRankSum=-0.244;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:101,24:0.19:125
chr14	21555087	rs145744937	AAATC	A	7390.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	21556963	rs35186993	A	AT	4868.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=31.21;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	21562560	rs7149011	T	C	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	21570273	rs745696	T	C	13169.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr14	21570614	rs4982408	A	C	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	21571119	rs12432043	A	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	21571208	rs12880628	G	T	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	21623010	rs8007993	T	C	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	21623290	rs7145814	T	C	2105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=2.156;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:228,125:0.35:353
chr14	21623648	rs7161544	G	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:135,59:0.30:194
chr14	21623836	rs4982419	G	A	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:148,86:0.37:234
chr14	21762989	.	ATTTTTTTT	A	670.90	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.55;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:1,19:0.95:20
chr14	21770681	rs17792599	A	G	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.258;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.362;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:204,61:0.23:265
chr14	21770730	rs6571751	A	G	3613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=-1.581;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:63,169:0.73:232
chr14	21775816	rs8005773	G	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr14	21785790	rs3748357	G	A	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-3.415;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:114,28:0.20:142
chr14	21790040	rs10151259	G	T	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:48,97:0.67:145
chr14	21792811	rs9322965	G	A	4317.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:99,206:0.68:305
chr14	21793236	rs7157052	G	A	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:55,122:0.69:177
chr14	21796784	rs3748361	G	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr14	21821821	rs3736824	A	C	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.137;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr14	21825924	rs3762156	T	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	21826182	.	A	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.579;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.123;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:71,14:0.16:85
chr14	21826718	rs3762157	T	G	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	21828520	rs927412	T	A	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	21829129	rs3762158	C	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	21829404	rs1543494	T	C	9599.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr14	21829470	.	C	CTT	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=3.880;QD=11.74;ReadPosRankSum=1.738;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr14	21830635	rs1983768	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	21831052	rs10138699	T	C	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	21831112	rs10146717	G	A	5363.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	21831419	rs61746713	C	T	2575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-1.498;QD=13.35;ReadPosRankSum=2.488;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:69,124:0.64:193
chr14	21831692	rs10139379	T	A	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	21833147	rs2295866	G	A	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	21834815	rs66530934	C	CTTTT	279.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.77;MQRankSum=-0.000;QD=31.08;ReadPosRankSum=1.383;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr14	21836400	rs8008670	T	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	21837879	rs17197100	C	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr14	21838160	rs2181125	A	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	21838781	rs4982445	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	21859536	rs3762159	T	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	21860360	rs1998332	G	A	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr14	21861211	rs7152833	C	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	21864124	rs10134108	C	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	21868798	rs17792647	T	A	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=-0.071;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:38,41:0.52:79
chr14	21869705	rs113076568	C	CT	632.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=0.000;QD=17.10;ReadPosRankSum=-2.151;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:3,34:0.92:37
chr14	21871653	rs8022395	C	T	5287.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	21874068	rs7155123	G	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	21882649	rs17792659	G	T	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr14	21930361	rs60977608	TA	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=3.376;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr14	21930596	rs10143000	G	A	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr14	21944955	rs17516362	G	C	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:260,118:0.31:378
chr14	21945415	rs2282046	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:207,73:0.26:280
chr14	21950836	rs6571850	T	G	1124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=2.039;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:12,51:0.81:63
chr14	21955930	rs1061031	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr14	21960408	rs3737050	A	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr14	21960425	rs74034928	G	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.187;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr14	21960816	rs1060722	T	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr14	21960969	rs7617	G	A	6786.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:121,317:0.72:438
chr14	21967133	rs1061027	C	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.754;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:174,65:0.27:239
chr14	21967438	rs3168880	G	A	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.635;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=2.311;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:128,40:0.24:168
chr14	21967916	rs1139130	A	G	2224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=1.590;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:382,153:0.29:535
chr14	21971729	rs2242526	C	G	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:128,67:0.34:195
chr14	21991626	rs1263810	C	G	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:310,131:0.30:441
chr14	21993498	rs1263811	G	A	7537.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr14	21993638	rs2242527	G	C	2900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=0.781;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:88,136:0.61:224
chr14	22037905	rs8009501	G	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	22038525	rs11626693	G	T	5779.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	22038659	rs17792778	T	C	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr14	22038915	rs4982462	A	G	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	22070146	rs10134340	C	T	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:4,171:0.98:175
chr14	22070355	rs199637760	T	C	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-12.165;QD=1.85;ReadPosRankSum=5.789;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:553,132:0.19:685
chr14	22070509	rs11157069	G	A	9976.78	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:53,421:0.89:474
chr14	22070595	rs35103338	AC	A	10090.73	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:72,301:0.81:373
chr14	22090208	rs8016939	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	22090594	rs1063365	C	G	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:145,70:0.33:215
chr14	22101945	rs4982475	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr14	22102745	rs41314525	C	A	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:170,93:0.35:263
chr14	22111660	rs3748364	C	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:150,69:0.32:219
chr14	22133416	rs12717305	A	G	11094.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr14	22133648	rs2874103	G	A	11858.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.614;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.07;ReadPosRankSum=-0.410;SOR=0.128;set=HC	GT:AD:AF:DP	1/1:2,471:1.00:473
chr14	22133997	rs970382	A	G	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	22134018	rs61732411	C	T	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:52,103:0.66:155
chr14	22134245	rs12435524	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=1.034;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr14	22167296	rs6572018	G	C	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.53;QD=25.50;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr14	22204568	rs2049788	G	A	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	22204998	rs148839584	C	T	7044.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:199,340:0.63:539
chr14	22217356	rs2075477	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	22218051	rs2075478	C	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	22237127	rs760008	C	T	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	22279809	rs2856411	A	C	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	22293510	rs2178782	T	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	22293554	rs35339724	G	GC	3616.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	22337119	rs909075	G	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.427;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr14	22337181	rs909076	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr14	22337393	rs876093	G	A	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.452;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:226,87:0.28:313
chr14	22356225	rs17197550	G	T	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.854;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:98,26:0.21:124
chr14	22356551	rs10483261	T	C	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:232,93:0.29:325
chr14	22362971	rs2075481	A	G	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:309,173:0.36:482
chr14	22363080	rs12895616	T	A	4947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=2.546;QD=9.50;ReadPosRankSum=0.340;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:373,148:0.28:521
chr14	22363084	rs12890675	C	G	4994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=2.033;QD=9.68;ReadPosRankSum=0.534;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:371,145:0.28:516
chr14	22392250	rs17182937	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr14	22392283	rs28501628	G	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=0.375;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr14	22392304	rs34365759	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr14	22392366	rs12437316	C	T	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:94,46:0.33:140
chr14	22392499	rs12435124	T	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.883;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr14	22392626	rs10140810	A	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:144,64:0.31:208
chr14	22392639	rs17197613	A	C	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:63,148:0.70:211
chr14	22392703	rs8021861	G	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:199,74:0.27:273
chr14	22392807	rs8008040	T	C	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:160,65:0.29:225
chr14	22409532	rs3045130	TC	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=-0.596;QD=0.62;ReadPosRankSum=-0.125;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:47,9:0.16:56
chr14	22409571	rs2178779	A	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:72,30:0.29:102
chr14	22470693	rs5807105	T	TA	5086.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	22470913	rs34215246	CT	C	424.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.31;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	22509188	rs4982545	T	C	1070.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=-0.231;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:7,49:0.88:56
chr14	22533857	rs3811313	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-3.235;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr14	22534141	rs3811311	T	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:63,40:0.39:103
chr14	22534450	rs3811308	A	G	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.307;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:92,28:0.23:120
chr14	22534466	rs3811307	C	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.051;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:102,29:0.22:131
chr14	22534497	rs3811306	T	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:114,45:0.28:159
chr14	22573582	rs2075498	A	C	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	22573824	rs112427980	T	TA	341.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	22573825	rs11408894	T	A	584.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	22580570	rs1040301	C	G	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	22580623	rs1040302	G	T	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=1.301;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:27,57:0.68:84
chr14	22600490	rs8014493	C	T	5133.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:99,244:0.71:343
chr14	22616547	rs2293730	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:56,32:0.36:88
chr14	22631217	rs2075492	C	T	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-1.387;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:163,65:0.29:228
chr14	22631678	rs2075493	C	T	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:132,71:0.35:203
chr14	22636784	rs11157435	A	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:179,89:0.33:268
chr14	22636874	rs11157436	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:91,26:0.22:117
chr14	22636954	rs11157437	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:40,11:0.22:51
chr14	22670458	rs2075494	C	T	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.158;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:108,42:0.28:150
chr14	22670975	rs2242542	G	A	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-1.120;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:137,47:0.26:184
chr14	22690209	rs2272551	A	C	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.375;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:98,36:0.27:134
chr14	22695084	rs4982579	C	T	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.717;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:181,75:0.29:256
chr14	22733490	rs7147374	A	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr14	22733655	rs7145658	G	C	3150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=-1.849;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:46,80:0.63:126
chr14	22733655	.	GCT	CCC	1486	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=24;MQ=60.0;NF=25;NR=19;PP=1486;QD=34.9879062469;SC=TGAGCACTCTGCTGCTGCTCC;SbPval=0.66;Source=Platypus;TC=69;TCF=37;TCR=32;TR=44;WE=22733665;WS=22733645;set=Platypus	GT:AD:AF:DP	1/0:25,44:0.64:69
chr14	22733657	rs7152255	T	C	3150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=-1.596;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:45,78:0.63:123
chr14	22733694	rs7147116	C	G	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:38,73:0.66:111
chr14	22733758	rs7145836	G	T	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:32,78:0.71:110
chr14	22733893	rs12589879	C	T	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr14	22739862	rs2075500	A	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:95,35:0.27:130
chr14	22740245	rs2075501	A	G	2856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=5.872;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=10.09;ReadPosRankSum=0.195;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:188,95:0.34:283
chr14	22740270	rs2075502	G	A	2373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=0.587;QD=9.85;ReadPosRankSum=-0.733;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:171,70:0.29:241
chr14	22749189	rs35972042	T	C	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr14	22749282	rs2075503	G	C	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:132,71:0.35:203
chr14	22749742	rs4435168	T	C	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.222;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr14	22772123	rs2009858	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:51,103:0.67:154
chr14	22919283	rs144554984	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr14	22924141	rs11625456	A	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=0.918;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr14	22930038	rs1882705	C	T	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:37,87:0.70:124
chr14	22942890	rs2254272	G	T	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=0.582;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:43,79:0.65:122
chr14	22947814	rs227858	G	A	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	22948471	rs227859	T	C	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr14	22952088	rs227861	G	A	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	22958350	rs3833810	ATGCC	A	1697.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	22961854	rs17255862	A	G	7601.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	22963632	rs11372266	G	GC	353.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	22964840	rs137998884	T	TG	2493.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	22965118	rs11334443	TC	T	742.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	22965144	rs11334442	AC	A	660.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	22972622	rs226990	A	G	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	22972742	rs2170810	G	A	7491.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	22972783	rs5807141	AC	A	9622.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr14	22972815	rs2170811	C	T	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	22972844	rs5020726	A	G	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	22973923	rs4343183	T	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=23.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	22973960	rs4343184	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=26.38;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	22974041	rs4343185	T	G	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.99;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	22974150	rs11324184	TC	T	7761.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=33.60;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr14	22974256	rs3811207	A	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	22975700	rs969914	T	G	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.90;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr14	22975728	rs3794450	G	A	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=25.57;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	22975755	rs3794451	T	C	4214.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	22975756	rs112338851	G	GCACACACA,GCACACACACA	3361.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=108;set=Intersection	GT:AF:DP	1/2:0.31,0.69:61
chr14	22976559	rs1872160	A	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	22976790	rs170543	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	22977669	rs1010116	G	A	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=1.214;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:260,88:0.25:348
chr14	22978335	rs226997	C	T	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	22978451	rs11443893	G	GC	3605.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	22978516	rs226998	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.058;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr14	22978577	rs226999	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr14	22979833	rs11410906	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.258;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-0.957;SOR=1.305;set=HC	GT:AD:AF:DP	0/1:75,16:0.18:91
chr14	22979847	rs5807144	G	GA,GAA	1702.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.399;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=-0.203;SOR=1.247;set=HC	GT:AD:AF:DP	1/2:13,60,34:0.56,0.32:107
chr14	22982069	rs11444527	A	AG	886.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	22984499	rs227027	C	T	826.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.93;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	22984500	rs144430862	G	GGTT	817.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	22985463	rs227029	G	A	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=29.64;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	22985487	rs11453171	A	AC	386.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	22988022	rs227009	C	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr14	22988748	rs227010	G	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	22989292	rs3811199	A	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr14	22990844	rs11624650	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr14	22990930	rs11380759	A	AT	5783.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	22993278	rs5807151	A	AG	1891.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	22994289	rs74038934	C	T	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-1.983;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:107,57:0.35:164
chr14	22995752	rs74038935	C	A	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:70,35:0.33:105
chr14	22997408	rs74038936	A	C	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.227;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.556;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:135,61:0.31:196
chr14	22997524	rs227024	A	G	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=2.277;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:235,94:0.29:329
chr14	22998590	rs5807161	AG	A	5789.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.09;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	22998619	rs5807162	AC	A	4413.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.48;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	22999179	rs11412657	T	TC	4567.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	22999202	rs11412658	A	AG	6151.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	23000062	rs227003	T	C	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:156,72:0.32:228
chr14	23000185	rs227004	C	T	7371.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr14	23001388	rs227006	T	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr14	23002265	rs11289756	GC	G	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	23005041	rs5807163	A	AG	9736.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=37.31;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr14	23006663	rs11396434	G	GC	1450.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	23006674	rs1154157	G	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	23009291	rs1263637	G	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	23011096	rs1263639	T	A	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,48:0.73:66
chr14	23012865	.	C	CA	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=8.141;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.265;QD=15.81;ReadPosRankSum=-1.684;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr14	23012873	rs56158321	C	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.791;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=14.631;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.239;QD=12.67;ReadPosRankSum=-1.527;SOR=2.381;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr14	23012926	rs11627600	T	C	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr14	23013878	rs56031439	C	T	241.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.55;ReadPosRankSum=0.000;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr14	23013973	rs12433098	G	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.631;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:59,15:0.20:74
chr14	23014062	rs1263641	G	C	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	23014106	rs7153643	C	G	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:26,68:0.72:94
chr14	23016457	rs56298757	C	G	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=1.511;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:269,63:0.19:332
chr14	23016696	rs61741618	A	C	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.021;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:122,44:0.27:166
chr14	23016747	rs74036412	G	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr14	23016773	rs74036413	A	T	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr14	23018665	rs1263653	C	G	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=2.787;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:70,22:0.24:92
chr14	23019647	rs1800388	C	T	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-1.288;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr14	23019657	rs1263658	C	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.335;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr14	23020489	rs371247	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:52,14:0.21:66
chr14	23020638	rs15795	T	C	5359.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:92,244:0.73:336
chr14	23020688	rs11462449	G	GC	8495.73	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:2,321:0.99:323
chr14	23020706	rs17461	C	A	1346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.303;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:249,93:0.27:342
chr14	23020820	rs5807168	G	GC	16931.73	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr14	23020825	rs3699	G	C	17554.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr14	23020919	rs3700	C	T	8740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.050;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.978;QD=27.23;ReadPosRankSum=-0.220;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:103,218:0.68:321
chr14	23020921	rs3701	G	C	8740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.973;QD=27.84;ReadPosRankSum=-0.536;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:100,214:0.68:314
chr14	23020970	rs3702	G	T	3751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.752;QD=13.64;ReadPosRankSum=1.126;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:98,177:0.64:275
chr14	23021039	rs9125	G	A	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:74,121:0.62:195
chr14	23025758	rs10873025	G	A	72.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.56;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr14	23025932	rs12888861	A	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr14	23026369	rs33982989	C	CG	478.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	23027743	rs4982639	G	C	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:46,97:0.68:143
chr14	23044002	rs7621	G	T	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	23057791	rs56253357	G	C	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=-0.135;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,33:0.73:45
chr14	23058084	rs1051101	A	G	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	23072194	rs8023110	G	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr14	23074881	rs17120310	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=1.246;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chr14	23078969	rs140776429	C	CT	50.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr14	23079730	rs1242933	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr14	23235697	rs1957373	C	T	4986.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:94,230:0.71:324
chr14	23235808	rs1957374	G	A	6994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.83;ReadPosRankSum=-2.097;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:114,328:0.74:442
chr14	23235885	.	C	CA	1807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-2.014;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:314,113:0.26:427
chr14	23236142	rs45616941	G	A	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:195,114:0.37:309
chr14	23236524	rs8572	C	T	13210.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr14	23237212	rs17619	G	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:102,39:0.28:141
chr14	23238943	rs77078684	A	G	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.518;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:123,36:0.23:159
chr14	23239512	rs2075846	A	G	4097.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:73,187:0.72:260
chr14	23239880	rs1957502	G	A	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	23242828	rs1061040	T	C	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	23244459	.	A	G	220.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	23244542	rs12891079	T	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:120,37:0.24:157
chr14	23244929	rs3751485	A	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr14	23245301	rs3850290	T	C	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr14	23249292	rs11568429	A	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:68,44:0.39:112
chr14	23282110	rs8018462	A	G	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,173:0.99:175
chr14	23282449	rs1805059	C	T	9019.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr14	23282699	rs3829407	A	T	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	23282750	rs7157654	A	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	23291924	rs11625306	C	T	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.276;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:210,85:0.29:295
chr14	23299135	rs1135641	G	T	4498.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	23299286	rs4982685	T	C	9252.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr14	23300095	rs9646148	T	G	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	23302585	rs12050397	T	A	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	23306048	rs1042703	C	T	26037.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=1009;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.01;ReadPosRankSum=-0.396;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:2,999:1.00:1001
chr14	23311042	rs17879412	CT	C	1897.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	23311044	rs57542488	T	C	1906.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	23312594	rs1042704	G	A	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:351,154:0.30:505
chr14	23312869	rs2236305	G	T	3782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.334;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.88;ReadPosRankSum=-0.307;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:42,89:0.68:131
chr14	23312875	rs2236306	G	C	4156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.418;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=4.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=-0.627;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:50,113:0.69:163
chr14	23312923	rs2236307	T	C	7086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=1.174;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:131,328:0.71:459
chr14	23314675	rs911912	C	T	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	23341666	rs8011536	G	C	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.459;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.085;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:213,64:0.23:277
chr14	23342735	rs144635209	CT	C	754.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.236;QD=2.84;ReadPosRankSum=-0.866;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:161,105:0.39:266
chr14	23355200	rs8021159	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:58,14:0.19:72
chr14	23371055	rs1127066	G	C	6776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=1.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.33;ReadPosRankSum=-0.782;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:132,310:0.70:442
chr14	23371255	rs61680322	G	GGGC	23109.73	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:22,541:0.96:563
chr14	23373986	rs1043209	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:25,75:0.75:100
chr14	23374435	rs2295680	G	A	5319.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:71,244:0.77:315
chr14	23374862	rs2295682	C	T	4328.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:83,201:0.71:284
chr14	23380483	rs118006771	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-2.041;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr14	23391533	rs144411999	C	CACAA	1400.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr14	23391913	rs8007089	T	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr14	23392059	.	AAG	A	33	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=33;QD=24.0;SC=CAGAGACAGAAAGAGAGAGAG;SbPval=1.0;Source=Platypus;TC=16;TCF=3;TCR=13;TR=2;WE=23392068;WS=23392049;set=Platypus	GT:AD:AF:DP	0/1:14,2:0.12:16
chr14	23394007	rs1956880	T	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr14	23394069	rs1956881	A	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr14	23396680	rs12589539	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr14	23415990	rs11414358	C	CT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.645;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr14	23416252	rs2008951	C	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr14	23424186	rs2016392	A	G	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-1.330;QD=12.71;ReadPosRankSum=0.776;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:33,59:0.64:92
chr14	23426182	rs2273626	C	A	5590.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:92,256:0.74:348
chr14	23456315	rs1043675	T	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.559;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr14	23459156	rs11624528	G	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:100,49:0.33:149
chr14	23467664	rs3829409	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:54,18:0.25:72
chr14	23504238	rs4144360	G	A	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	23511357	rs4981456	G	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr14	23511993	rs200046969	G	A	2411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-0.115;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:400,157:0.28:557
chr14	23512466	rs72684308	T	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.34;ReadPosRankSum=1.550;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr14	23518791	rs2295689	A	G	2027.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.340;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.73;ReadPosRankSum=-0.762;SOR=0.502;set=HC	GT:AD:AF:DP	1/1:1,81:0.99:82
chr14	23518918	rs11623976	T	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:168,60:0.26:228
chr14	23519131	rs116261083	C	T	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:107,149:0.58:256
chr14	23523244	rs11625828	C	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:65,20:0.24:85
chr14	23524137	rs11418548	T	TG	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.602;QD=4.78;ReadPosRankSum=0.197;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr14	23524703	rs79158479	G	C	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,62:0.65:95
chr14	23530908	rs56402910	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr14	23532865	rs57315948	A	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr14	23548787	rs34870944	C	CGTGAAT	1273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.167;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.857;QD=6.37;ReadPosRankSum=-1.413;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:157,43:0.21:200
chr14	23549319	rs1885097	A	G	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:115,52:0.31:167
chr14	23549379	rs941719	C	G	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.34;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	23549379	.	CG	GA,GG	843	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=6;HapScore=1;MGOF=6;MMLQ=27;MQ=60.0;NF=11,37;NR=13,39;PP=236,843;QD=12.0611614526;SC=ATGAGGACAGCGGGGGCTGGG;SbPval=0.65;Source=Platypus;TC=76;TCF=37;TCR=39;TR=24,76;WE=23549388;WS=23549369;set=Platypus	GT:AF:DP	0/1:0.32:76
chr14	23549380	rs1885098	G	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=1.225;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:95,45:0.32:140
chr14	23549785	rs3811182	T	C	1696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.233;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:300,114:0.28:414
chr14	23550126	rs4982727	T	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr14	23550887	rs717984	C	A	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.007;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:134,53:0.28:187
chr14	23559973	rs8020434	T	C	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	23571671	rs4444236	A	T	10219.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr14	23572776	rs148655160	T	TAAAACAAAAC	1952.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	23574112	rs57331962	CA	C	282.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=2.192;QD=1.20;ReadPosRankSum=1.540;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:195,41:0.17:236
chr14	23574114	rs55686792	GCA	G	282.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=2.192;QD=1.20;ReadPosRankSum=1.538;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:195,41:0.17:236
chr14	23596320	rs761874	A	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr14	23596621	rs2180395	G	A	6774.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:104,308:0.75:412
chr14	23598849	rs7157207	T	G	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:31,77:0.71:108
chr14	23598952	rs7157021	A	G	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:90,192:0.68:282
chr14	23607246	rs1015089	C	A	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	23609916	rs10151002	A	T	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	23612489	rs2273394	C	G	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr14	23624583	rs8011016	C	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr14	23634451	rs55816003	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.16;ReadPosRankSum=-0.057;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr14	23727902	rs10547691	CTTT	C,CT	1899.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.714;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.94;ReadPosRankSum=-0.227;SOR=1.154;set=HC	GT:AD:AF:DP	1/2:7,20,41:0.29,0.60:68
chr14	23727919	rs8015556	T	C	2221.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.20;ReadPosRankSum=-0.020;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:7,62:0.90:69
chr14	23729188	rs2144038	T	C	82.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.81;ReadPosRankSum=-0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr14	23729750	rs2064483	G	A	2177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=0.167;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:36,103:0.74:139
chr14	23731855	rs139713000	C	CT	2002.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:79,117:0.60:196
chr14	23732091	rs11625337	AT	GC	8966.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;JOINED;set=Intersection	GT:AD:AF:DP	0/1:103,220:0.68:323
chr14	23733725	rs3811180	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr14	23733978	rs59984693	GT	G	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.861;QD=8.77;ReadPosRankSum=-0.406;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr14	23734027	.	G	GT	49	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=17;HapScore=4;MGOF=5;MMLQ=25;MQ=56.36;NF=0;NR=3;PP=49;QD=17.3333333333;SC=ATATTACAAGGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=7;TCF=1;TCR=6;TR=3;WE=23734045;WS=23734017;set=Platypus	GT:AD:AF:DP	0/1:4,3:0.43:7
chr14	23734032	rs11628689	T	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.12;ReadPosRankSum=0.425;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr14	23734037	rs5807215	T	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.12;ReadPosRankSum=0.256;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr14	23744826	rs67447855	TTCC	T	3433.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr14	23746269	rs1057119	C	G	5767.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	23777374	rs910332	A	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	23789096	rs10640563	C	CTT	4172.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	23792019	rs8020117	T	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	23793305	rs45528934	C	T	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.88;ReadPosRankSum=2.866;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:378,111:0.23:489
chr14	23816577	rs73604504	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr14	23816998	rs12896494	T	C	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	23842017	rs7145531	C	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr14	23842040	rs7145551	C	T	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.553;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.33;ReadPosRankSum=1.567;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:36,66:0.65:102
chr14	23844979	rs79877597	C	A	8975.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:188,415:0.69:603
chr14	23845244	rs3811178	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr14	23847780	rs182816613	C	T	4834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.783;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.17;ReadPosRankSum=0.480;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:89,210:0.70:299
chr14	23848311	rs723840	C	T	9635.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr14	23848709	rs139534097	C	G	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr14	23851400	rs453361	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=1.958;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr14	23851874	rs178636	A	G	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.02;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	23851874	.	ACCTCATGC	GCCTCATGA,GCCTCATGC	828	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=27;MQ=60.0;NF=14,24;NR=36,52;PP=828,201;QD=17.6293574972;SC=AGGCACCCATACCTCATGCAT;SbPval=0.7;Source=Platypus;TC=76;TCF=24;TCR=52;TR=50,76;WE=23851890;WS=23851864;set=Platypus	GT:AF:DP	0/1:0.66:76
chr14	23851882	rs10135780	C	A	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.63;ReadPosRankSum=0.653;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:23,72:0.76:95
chr14	23852651	rs35182223	T	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	23853629	rs8006357	T	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,50:0.62:81
chr14	23854155	rs8004990	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr14	23854324	rs178638	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	23854352	rs178639	A	T	195.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	23855320	rs382872	G	A	3644.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:512,227:0.31:739
chr14	23855426	rs45520434	C	T	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:170,90:0.35:260
chr14	23855478	rs396024	C	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:73,36:0.33:109
chr14	23855569	rs178640	A	G	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	23855849	rs2071634	C	T	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:44,118:0.73:162
chr14	23856896	rs178642	A	G	4278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=0.356;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:487,247:0.34:734
chr14	23858232	rs451794	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:96,64:0.40:160
chr14	23858271	rs368353621	AGG	A	1140.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,38:0.38:99
chr14	23861811	rs365990	A	G	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr14	23865885	rs452036	G	A	17424.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,690:1.00:690
chr14	23866713	rs412768	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	23869806	rs28671012	A	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr14	23872666	rs434273	T	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	23873092	rs388914	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.237;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:71,26:0.27:97
chr14	23874117	rs440466	T	C	13191.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr14	23874523	rs2277474	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:167,105:0.39:272
chr14	23874541	rs17277970	C	T	4230.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:122,202:0.62:324
chr14	23876267	rs28711516	C	T	6203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=-0.497;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:96,281:0.75:377
chr14	23881920	rs12147570	G	T	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr14	23882144	rs2284651	T	C	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	23882186	rs7149517	T	G	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	23883184	rs3729833	C	T	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=1.761;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:255,104:0.29:359
chr14	23884137	rs3729832	T	A	4345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-0.983;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:120,210:0.64:330
chr14	23884889	rs3729830	C	T	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,86:0.68:126
chr14	23885997	rs3729828	G	A	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	23886264	rs3729825	C	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:282,122:0.30:404
chr14	23887645	rs7159367	T	C	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=25.53;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	23888323	rs34598192	T	TG	11802.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.28;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr14	23888665	rs2277475	A	T	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	23892645	rs35748206	AACAC	A	1895.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.435;QD=34.47;ReadPosRankSum=2.212;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr14	23892888	rs7157716	A	G	8083.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr14	23893453	rs45457293	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr14	23895479	rs28475411	C	A	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	23897996	rs3729814	G	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr14	23898994	rs2231126	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr14	23899027	rs735711	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:64,24:0.27:88
chr14	23899725	rs3729810	A	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr14	23900794	rs2069542	G	A	4856.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:108,224:0.67:332
chr14	23902753	rs2069540	G	A	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:32,105:0.77:137
chr14	23924704	rs2331984	G	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=25.44;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	23924744	rs57772187	T	TAA,TAAAA	673.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.80;QD=32.08;SOR=1.230;set=HC	GT:AD:AF:DP	1/2:0,8,13:0.38,0.62:21
chr14	23924767	rs60519724	AT	A	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	23924818	rs8005802	C	A	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=44.91;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	23924830	rs10131038	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=41.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	23938813	rs8015781	A	G	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	23939927	rs5807217	GT	G	39.19	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr14	23940081	rs1028587	A	G	4633.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.88;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	23940086	rs1028588	A	G	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.45;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	23940089	rs3215682	AC	A	4939.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	23944505	rs2236260	G	A	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.058;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:166,62:0.27:228
chr14	23944514	rs2236261	C	A	6637.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.054;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.348;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.02;ReadPosRankSum=0.883;SOR=0.484;set=HC	GT:AD:AF:DP	1/1:1,213:1.00:214
chr14	23945366	rs2295706	A	G	6677.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr14	23947374	rs1956950	G	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	23991105	rs223122	G	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr14	23992296	rs223123	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.231;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr14	23992742	rs223124	T	G	2419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=1.909;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:412,167:0.29:579
chr14	23999306	rs3742488	G	A	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:34,98:0.74:132
chr14	24000990	.	C	CT	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.995;QD=2.79;ReadPosRankSum=-0.934;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:71,30:0.30:101
chr14	24408667	.	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=0.368;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr14	24429093	rs11158474	A	C	1253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=3.297;MLEAC=1;MLEAF=0.500;MQ=52.86;MQRankSum=-6.838;QD=10.03;ReadPosRankSum=-2.410;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:63,62:0.50:125
chr14	24436381	.	G	GA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=2.598;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-4.343;QD=0.23;ReadPosRankSum=-0.815;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:175,28:0.14:203
chr14	24473478	.	TA	T	176.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.000;QD=3.05;ReadPosRankSum=3.079;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:34,24:0.41:58
chr14	24476328	.	A	C	733.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr14	24512897	rs62000819	C	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-1.744;QD=5.43;ReadPosRankSum=-2.243;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr14	24512962	rs12894919	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.183;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=3.326;QD=11.48;ReadPosRankSum=0.502;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr14	24518340	rs139644867	G	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr14	24519959	rs6573541	T	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.109;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:106,39:0.27:145
chr14	24522821	rs9972282	C	T	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:272,106:0.28:378
chr14	24522911	rs35809913	C	G	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:98,206:0.68:304
chr14	24523594	rs11158525	G	A	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:259,145:0.36:404
chr14	24525081	rs45455891	T	A	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:17,64:0.79:81
chr14	24525634	rs4982851	C	A	26475.77	.	AC=2;AF=1.00;AN=2;DB;DP=1034;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,1023:1.00:1023
chr14	24525782	rs4982852	A	G	12394.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr14	24526206	rs45484702	T	C	6513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=-0.522;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:137,301:0.69:438
chr14	24526287	rs7161473	G	C	13391.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr14	24526478	rs12879859	A	G	6295.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:103,289:0.74:392
chr14	24526593	rs12431698	A	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	24529820	rs1951636	C	G	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,67:0.76:88
chr14	24529890	rs1951635	A	G	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	24533321	rs58091590	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.25;ReadPosRankSum=-2.484;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	24533539	rs10146906	C	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:115,65:0.36:180
chr14	24534781	rs12590548	G	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr14	24534916	rs79328356	G	T	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:37,84:0.69:121
chr14	24535117	rs74917851	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.80;ReadPosRankSum=-1.248;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr14	24540710	rs372732697	GC	G	427.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr14	24542458	rs3742497	T	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	24543808	rs2070343	G	C	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.813;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:158,62:0.28:220
chr14	24543873	rs2025256	G	A	8814.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr14	24544248	rs2073350	C	T	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:19,67:0.78:86
chr14	24545366	rs2070342	T	C	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	24545835	rs45621931	C	T	2784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=805;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-1.093;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:590,206:0.26:796
chr14	24545984	rs2070345	G	C	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:95,47:0.33:142
chr14	24563339	rs4982857	A	G	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	24567498	rs3021119	A	C	14319.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr14	24587515	rs2277480	G	A	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr14	24587545	rs2277481	A	G	2766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.136;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=0.564;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:58,132:0.69:190
chr14	24587639	rs3825584	G	A	5328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-0.671;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:143,260:0.65:403
chr14	24587667	rs17101367	C	T	5009.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:129,241:0.65:370
chr14	24587795	rs2277482	C	T	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:18,60:0.77:78
chr14	24600390	rs927494	T	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr14	24601318	rs11574503	G	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr14	24614361	rs7146672	T	G	11234.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.19;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,446:1.00:446
chr14	24615435	rs4575	T	C	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:42,93:0.69:135
chr14	24617238	rs2273913	C	T	17169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=1151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=2.294;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:339,794:0.70:1133
chr14	24624741	rs2295979	C	G	4015.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:99,168:0.63:267
chr14	24625031	rs4982862	C	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr14	24635589	rs111232493	C	CT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=-1.200;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr14	24646406	rs10690822	G	GGAA	5361.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	24647522	rs3736840	G	T	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:14,80:0.85:94
chr14	24647814	rs1885711	T	C	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:35,64:0.65:99
chr14	24647957	rs1885710	C	T	9995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=0.724;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:236,467:0.66:703
chr14	24649835	rs2273911	T	C	3316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-1.249;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:94,157:0.63:251
chr14	24650047	rs7145633	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr14	24652107	rs34130297	A	AG	5764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.09;ReadPosRankSum=-0.188;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:76,211:0.74:287
chr14	24653523	rs11550452	G	C	1989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.061;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:85,100:0.54:185
chr14	24653954	rs7146310	G	A	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:52,136:0.72:188
chr14	24654489	rs2025258	T	C	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:31,112:0.78:143
chr14	24656251	rs2295978	C	T	10068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=0.791;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:240,483:0.67:723
chr14	24657407	rs6573607	T	G	2871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=-0.108;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:73,139:0.66:212
chr14	24659408	rs67843857	ACT	A	1078.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr14	24662177	rs10583	C	T	12225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=1.314;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:238,573:0.71:811
chr14	24679877	rs2295322	C	T	2159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=0.073;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:241,131:0.35:372
chr14	24683304	rs145254894	C	A	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:167,74:0.31:241
chr14	24686480	rs149980708	TTTG	T	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.36;ReadPosRankSum=0.312;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	24701598	.	ACC	A,AC	4163.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=361;set=Intersection	GT:AF:DP	1/2:0.22,0.62:253
chr14	24701604	.	C	T	3515.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DP=339;ExcessHet=3.0103;FS=4.200;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=14.06;ReadPosRankSum=2.854;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:93,157:0.63:250
chr14	24701605	.	C	T	379.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.296;ClippingRankSum=0.000;DP=331;ExcessHet=3.0103;FS=7.165;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-1.567;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:207,44:0.18:251
chr14	24701705	rs17794752	G	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chr14	24702987	rs11158615	A	G	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=5.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-1.041;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:167,74:0.31:241
chr14	24709915	rs75124018	G	A	6228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=1.052;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:114,286:0.71:400
chr14	24710819	rs5807249	CA	C	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.877;QD=6.05;ReadPosRankSum=2.051;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:64,78:0.55:142
chr14	24718379	rs41294726	TCTCCGGGAGCCCTGGACTCCCC	T	2727.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	24718515	rs2229463	G	A	12493.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr14	24728294	rs1126432	G	T	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:50,131:0.72:181
chr14	24739055	rs2295313	T	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	24761690	rs1051883	C	T	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	24765622	rs2295307	G	A	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	24765684	rs2295306	G	A	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	24769849	rs113258190	A	AGAGGAG,AGAG	9034.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=296;set=Intersection	GT:AF:DP	1/1:0.92:226
chr14	24771137	rs4247000	G	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	24771256	rs4247001	T	C	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	24772822	rs4982894	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	24772922	rs4982895	C	T	8690.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr14	24779771	rs74677590	A	G	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:50,116:0.70:166
chr14	24791136	rs4981504	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.44;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	24793600	rs1884366	G	A	5769.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr14	24795115	rs11622527	G	T	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	24795231	rs67156008	CCA	C	13019.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr14	24795237	rs55970272	T	C	7528.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr14	24795258	rs11622863	C	T	9937.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr14	24800879	rs3181256	G	A	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	24801635	rs1950502	A	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	24801956	rs2332322	G	C	4999.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	24802263	rs8003158	A	G	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	24803710	rs77202343	G	A	7540.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:112,349:0.76:461
chr14	24803956	rs1124644	A	C	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	24806229	rs724165	G	A	10772.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr14	24806800	rs1950501	G	C	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	24808168	rs3181248	G	A	8482.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	24835017	rs11362560	CG	C	1350.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	24836954	rs138364808	GGGA	G	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=0.549;QD=19.75;ReadPosRankSum=-0.282;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr14	24838621	rs1955915	C	T	8338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-1.523;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:232,391:0.63:623
chr14	24839083	rs2229309	G	C	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:234,94:0.29:328
chr14	24839165	rs2228233	C	T	8584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=-0.502;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:168,402:0.71:570
chr14	24843620	rs2295298	T	C	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.134;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.182;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:137,56:0.29:193
chr14	24843699	rs12890614	C	T	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.091;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:129,32:0.20:161
chr14	24845154	rs12880769	C	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:74,24:0.24:98
chr14	24845402	rs10141896	G	T	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:59,115:0.66:174
chr14	24845841	rs7149586	T	C	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:391,171:0.30:562
chr14	24846757	rs2243891	A	G	6387.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	24878485	rs12897153	G	A	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:254,147:0.37:401
chr14	24879519	rs62000679	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	24882312	rs2273634	G	C	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-1.552;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:88,51:0.37:139
chr14	24882373	rs3818251	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr14	24882440	rs4982909	G	C	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	24882802	rs11626443	A	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.72;ReadPosRankSum=0.440;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr14	24882805	rs10146609	T	C	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.58;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	24883720	rs143075190	GGGGTTTCCACAGA	G	200.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr14	24887462	rs3814811	T	C	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	24897810	.	C	T	429.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr14	24897948	rs73593269	G	T	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:54,152:0.74:206
chr14	24898547	rs76835855	G	C	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:110,62:0.36:172
chr14	24898556	rs2273633	G	C	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:72,127:0.64:199
chr14	24898558	rs2273632	C	T	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:135,72:0.35:207
chr14	24898693	rs2273631	C	T	2052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.681;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:169,62:0.27:231
chr14	24898696	rs2273630	T	C	2064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=3.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=0.345;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:163,62:0.28:225
chr14	24898751	rs2273629	G	A	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-1.418;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:79,33:0.29:112
chr14	24898780	rs5025771	C	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=0.336;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr14	24900209	rs1956905	C	G	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.982;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:102,45:0.31:147
chr14	24901276	rs7151995	G	T	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	24901844	rs2255591	A	G	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=1.950;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:257,125:0.33:382
chr14	24905533	rs2277488	G	A	10258.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr14	24905548	rs2277489	G	A	11656.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr14	24909281	rs1043839	C	T	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	24909362	rs1043831	T	C	7720.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr14	24909475	rs3211056	C	G	11075.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr14	24909731	rs2273628	C	T	13681.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,529:1.00:529
chr14	24910210	rs712487	C	A	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr14	24910317	rs10668100	C	CTT	2419.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=41.72;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	24910846	rs11628143	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	24910876	rs11158703	G	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	24910973	rs11625819	TT	GA	6944.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	24911116	rs11158704	C	T	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	24911169	rs11158705	C	T	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	24911764	rs1956903	G	A	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	24911852	rs12897925	C	G	6936.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr14	24970942	rs4600392	A	G	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	24975435	rs5249	G	T	6627.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr14	24975509	rs1885108	T	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	25045589	rs12878578	A	G	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	25078914	rs1957526	A	C	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	25102160	rs8192917	C	T	6095.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr14	25281797	.	ACT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.62;ReadPosRankSum=0.842;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr14	25281843	rs712491	C	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	25287095	rs854398	T	C	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	26939474	rs1245213	T	A	143.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	27066713	.	C	CTT	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=-1.088;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr14	29261309	rs56025822	A	AAAC	2571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=5.838;QD=8.35;ReadPosRankSum=0.277;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:219,89:0.29:308
chr14	30069063	rs147407603	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=0.338;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:78,30:0.28:108
chr14	30098349	rs1191601	T	C	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	30102025	rs1209180	T	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	30103441	rs1191599	T	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	31355096	rs1045644	C	G	9116.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr14	31359024	rs13122	A	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr14	31364099	rs34255465	C	CT	1342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=1.125;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:36,90:0.71:126
chr14	31364259	rs35858438	CA	C	216.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=6.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=0.991;SOR=0.101;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr14	31380215	rs3830860	TA	T	1565.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	31381351	rs2273171	T	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:208,93:0.31:301
chr14	31404277	rs9322868	T	C	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	31425437	rs12886419	T	C	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:35,80:0.70:115
chr14	31483761	rs179724	G	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	31483955	rs11156654	T	A	233.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr14	31535603	rs6571386	G	C	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr14	31538939	rs7150619	A	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	31538984	rs7155228	C	G	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	31549745	rs11621299	T	G	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr14	31582380	rs1315794	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	31582526	rs2273483	T	C	4013.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:106,189:0.64:295
chr14	31597685	rs7157007	C	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	31602666	rs34588788	A	C	4443.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:53,190:0.78:243
chr14	31610939	rs12888959	T	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr14	31625994	rs35553721	CA	C	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.651;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.780;QD=7.69;ReadPosRankSum=0.400;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:18,40:0.69:58
chr14	31647241	rs2274201	G	A	4162.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:82,190:0.70:272
chr14	31647439	rs33983486	T	C	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:44,135:0.75:179
chr14	31778080	rs144369949	C	CA	105.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	31793053	rs57656564	GAT	G	972.80	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr14	31795361	rs3736917	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr14	31806943	rs4595710	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	31809486	rs8012940	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	31809568	rs11408327	G	GA	2937.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=28.80;SOR=1.212;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	31819047	rs3736918	C	T	6250.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr14	31819913	rs7158257	A	G	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	31819966	rs10602248	TTTTG	T	1310.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	31828076	rs942907	A	C	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	31841162	rs5025288	T	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	31849524	rs4981841	T	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	31858025	rs3887865	C	T	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	31858209	rs7157977	C	T	2702.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:72,130:0.64:202
chr14	31863225	rs17097870	G	C	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=0.312;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:10,29:0.74:39
chr14	31864300	rs7142126	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	31864338	.	T	C	383.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr14	31864485	rs7141532	G	C	10371.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr14	31922408	rs34278949	G	A	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.509;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:130,42:0.24:172
chr14	31952744	rs17097918	C	T	3887.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:84,184:0.69:268
chr14	32032129	rs10143899	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:60,18:0.23:78
chr14	32032214	rs10144137	G	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr14	32047217	rs7142098	T	C	5243.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:125,257:0.67:382
chr14	32123347	rs4981874	A	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	32142730	.	G	A	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=-0.208;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:107,64:0.37:171
chr14	32295772	rs17379143	T	A	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr14	32296018	rs1540425	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	32315901	rs8006872	A	G	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	32414145	rs1278926	C	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	32414386	rs1278927	C	A	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	32414463	rs1278928	T	C	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	32419235	rs1278941	A	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr14	32419331	rs1278942	C	T	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-1.987;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:211,92:0.30:303
chr14	32419398	rs2236532	G	A	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.918;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:142,47:0.25:189
chr14	32438484	rs1952966	G	A	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-3.014;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:114,45:0.28:159
chr14	32476068	rs2378955	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:95,53:0.36:148
chr14	32546833	rs74428616	C	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=1.576;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr14	32563640	rs8004384	A	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	33004975	rs35436895	G	A	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:202,77:0.28:279
chr14	33014869	rs3742926	C	T	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=1.646;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:175,50:0.22:225
chr14	33015014	rs7150894	G	A	12146.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr14	33015082	rs17099240	A	G	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=3.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.235;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:262,88:0.25:350
chr14	33015397	rs45477296	G	T	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:241,102:0.30:343
chr14	33046388	rs1950703	A	G	9751.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr14	33046471	rs768787	T	G	6067.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr14	33147414	rs1950697	C	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	33165084	rs3742927	A	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	33165182	rs3742929	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	33292743	rs2239647	A	C	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	33293022	rs1051694	A	G	8097.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:163,382:0.70:545
chr14	33293122	rs1051695	A	G	10087.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:2,387:0.99:389
chr14	33293531	rs4647899	T	A	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-2.692;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:127,65:0.34:192
chr14	33294042	rs2057121	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr14	33525317	rs35719018	G	GA	527.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	34047414	rs1958541	T	C	3852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-0.357;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:102,185:0.64:287
chr14	34149916	rs2297118	T	C	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:106,52:0.33:158
chr14	34149997	rs2297117	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr14	34243477	rs8019077	T	A	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	34263034	rs36025922	TAAA	T	1534.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.622;QD=23.25;ReadPosRankSum=0.761;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,53:0.80:66
chr14	34395148	rs3832940	GA	G	4456.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:45,125:0.74:170
chr14	34396100	rs10137361	C	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.230;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr14	34993863	.	A	ATGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTG	2583.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=88;set=Intersection	GT:AF:DP	1/2:0.61,0.39:62
chr14	35050586	rs4403967	G	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	35062166	rs12435717	T	C	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	35062312	rs12432539	C	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	35075022	rs7151774	G	T	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	35099099	rs11847568	A	G	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	35099391	rs201601692	A	AGCGGG	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.15;MQRankSum=1.718;QD=18.26;ReadPosRankSum=-1.292;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr14	35182348	rs35515423	GA	G	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-1.111;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr14	35182406	rs35219728	GATA	G	609.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,19:0.28:69
chr14	35183888	rs117211470	C	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr14	35222626	rs3832925	A	ATTGT	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.86;ReadPosRankSum=1.036;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr14	35227831	rs60358922	G	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-1.809;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr14	35227880	rs61981201	G	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr14	35230980	rs45620534	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr14	35231108	rs1044140	A	T	5942.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:108,274:0.72:382
chr14	35240664	rs41309244	C	G	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:36,88:0.71:124
chr14	35242828	rs2275145	G	A	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-0.354;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:86,48:0.36:134
chr14	35243006	rs2275146	G	A	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	35249324	rs17527243	A	G	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.40;ReadPosRankSum=-0.930;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr14	35263983	rs17102745	T	C	1593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.587;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=4.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=1.771;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:187,99:0.35:286
chr14	35331288	rs17592803	G	A	3027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-0.255;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:90,146:0.62:236
chr14	35343629	rs2145031	A	C	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-1.492;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:55,35:0.39:90
chr14	35469015	rs72680641	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr14	35476673	rs28456062	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr14	35477785	rs1712351	G	A	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	35497266	rs17510813	C	T	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:54,111:0.67:165
chr14	35515606	rs4007475	TGG	T	844.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr14	35515957	rs45530731	C	A	9686.77	.	AC=1;AF=0.500;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	0/1:196,467:0.70:663
chr14	35546373	rs3211139	T	C	9977.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr14	35546452	rs17103013	A	G	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.285;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:222,69:0.24:291
chr14	35546498	rs8011242	T	A	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	35550464	rs139237361	TAA	T	610.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	35557331	rs45557631	C	T	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.704;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:162,67:0.29:229
chr14	35565873	rs80012713	C	A	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:57,139:0.71:196
chr14	35578990	rs72664814	A	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=0.176;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr14	35579228	rs144725443	AGTTT	A	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.52;ReadPosRankSum=1.039;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr14	35579968	rs76932844	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.42;ReadPosRankSum=0.398;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr14	35591174	rs1056879	T	C	27570.77	.	AC=2;AF=1.00;AN=2;DB;DP=1060;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,1054:1.00:1054
chr14	35595842	rs79131050	C	T	117.85	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr14	35596604	rs57818081	CATT	C	1105.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	35777358	rs8012896	T	G	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.68;ReadPosRankSum=0.419;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:9,33:0.79:42
chr14	35779397	rs33988739	CT	C	330.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=-0.767;SOR=3.477;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chr14	35779543	rs10140819	G	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr14	35781904	rs17597267	T	C	188.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.17;ReadPosRankSum=-1.602;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr14	35781938	rs80315070	G	T	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=0.688;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr14	35782300	rs17597281	C	G	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=-0.325;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:13,43:0.77:56
chr14	35783706	rs77796720	G	A	3915.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:71,184:0.72:255
chr14	35871217	rs8904	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:86,39:0.31:125
chr14	35871407	rs1022714	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	35871441	rs70937092	A	AGTAAGCTATTAAAAAAAGG	219.76	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.46;QD=36.63;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	35871960	rs2233419	G	A	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:57,189:0.77:246
chr14	35872094	rs2233417	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:11,48:0.81:59
chr14	35872792	rs2233415	A	G	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr14	35873770	rs1957106	G	A	3598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=903;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.401;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:648,237:0.27:885
chr14	36003802	.	C	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-0.820;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:175,28:0.14:203
chr14	36004075	rs1958260	A	G	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr14	36044337	rs61622892	G	GA	327	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr14	36096255	rs34349314	G	GA,GAA	1018.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=2.249;SOR=0.684;set=HC	GT:AD:AF:DP	1/2:16,44,19:0.56,0.24:79
chr14	36121087	rs35892589	CA	C	304.94	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr14	36218039	.	CA	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.736;QD=2.36;ReadPosRankSum=-1.414;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr14	36231816	rs11847872	G	A	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	36240374	.	T	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=4.499;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-4.662;QD=2.99;ReadPosRankSum=0.451;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr14	36334030	rs12890607	G	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-0.732;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr14	36334905	.	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.142;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr14	36768276	rs4900833	T	C	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	36769898	rs2296387	T	G	444.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.34;ReadPosRankSum=-0.466;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr14	36781037	rs7154340	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	36789729	rs3168891	T	G	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr14	36789775	rs2899849	A	T	10719.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr14	36789795	rs11558802	G	A	10268.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	36840650	rs3742592	A	T	9120.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr14	36944188	rs1012914	G	A	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	36988928	rs372170273	AAG	A	3579.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:33,117:0.78:150
chr14	37051427	rs11624339	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr14	37051634	rs35669843	G	C	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=0.408;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:15,37:0.71:52
chr14	37131993	rs12883298	G	C	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	37132020	rs17104895	G	A	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:93,30:0.24:123
chr14	37132048	rs12882923	A	G	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	37132061	rs12883049	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:148,60:0.29:208
chr14	37135605	rs7143727	G	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr14	37135753	rs4904210	G	C	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:50,118:0.70:168
chr14	37140504	rs8004187	C	T	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	37153163	rs1884217	A	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:62,21:0.25:83
chr14	37153185	rs10132292	T	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.779;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr14	37194681	rs58321507	AAAAT	A	350.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr14	37203617	rs3061575	T	TTA	692.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:69,26:0.27:95
chr14	37203642	rs5807904	TA	T	720.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:100,32:0.24:132
chr14	37344229	rs5807914	A	AG	6270.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	37344275	rs712384	C	T	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	37344347	rs2021404	C	T	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr14	37641880	rs1403	C	A	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.110;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:164,60:0.27:224
chr14	37739846	rs66866056	C	CT	52.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.549;QD=4.39;ReadPosRankSum=0.076;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr14	37838604	rs35277854	C	CA	83.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr14	38061742	rs7144658	C	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:195,91:0.32:286
chr14	38064009	rs762083	G	C	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=1.856;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:64,29:0.31:93
chr14	38206818	rs4901157	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=0.395;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr14	38222291	rs4901176	G	C	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	38256944	rs12586423	T	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	38260089	rs7153624	C	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	38264358	rs969446	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	38265344	rs1951639	T	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	38266074	rs9805910	C	T	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	38286909	rs377178336	T	C	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:81,203:0.71:284
chr14	38295646	rs10483494	T	C	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	38679763	.	C	CGCTCTGAGCCCGGGCCACGCAGGG	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=6.847;QD=3.31;ReadPosRankSum=-1.266;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr14	39502539	rs11418467	G	GA	961.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	39502626	rs11283010	A	AAATAGAAC	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	39510173	rs62001129	T	C	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	39514231	rs1884384	T	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	39517691	rs4902344	T	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.715;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr14	39543814	rs147995893	T	TAAG	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.645;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr14	39554893	.	TACACACACACAC	T	2192.73	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:27,67:0.71:94
chr14	39556185	rs8018720	G	C	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	39565403	rs3818163	T	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr14	39583481	rs2277458	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	39587348	rs10136536	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.172;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr14	39591082	rs10132073	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.181;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr14	39605542	rs9322993	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	39620788	rs8003485	A	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	39620936	rs8003807	C	T	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	39623533	rs12147991	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr14	39627695	rs9322994	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.680;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr14	39627747	rs761804	A	G	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	39644418	rs62620010	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:6,29:0.83:35
chr14	39644498	rs1061583	G	A	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.858;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:157,59:0.27:216
chr14	39645863	rs2252040	G	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	39647153	rs5808025	TTTAAG	T	163.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr14	39648629	rs11558739	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr14	39650234	rs2180792	A	T	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	39650629	.	G	A	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-1.033;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:225,78:0.26:303
chr14	39703324	rs7141840	A	G	7648.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr14	39736680	rs7140561	T	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	39748480	rs7158558	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	39763006	rs956109	T	C	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	39773639	rs2274398	G	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	39777676	rs1950952	G	C	177.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	39784010	.	A	ATGTGTG	2239.73	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	39784012	rs12436164	A	G	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=45.05;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	39784014	rs2415539	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=45.34;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	39784042	rs2415540	A	G	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.95;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	39784042	.	ATA	GTG	896	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=1;MGOF=67;MMLQ=28;MQ=59.07;NF=0;NR=16;PP=896;QD=59.3417421789;SC=GTGTGTGTGTATATATATATA;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=16;WE=39784052;WS=39784032;set=Platypus	GT:AD:AF:DP	1/1:1,16:0.94:17
chr14	39784044	rs112379214	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	39784965	rs10150863	G	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	39796048	rs36031495	GT	G	1636.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:3,83:0.97:86
chr14	39818028	rs1140952	A	G	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=4.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.690;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:185,80:0.30:265
chr14	39818222	rs7156249	G	T	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	39856043	rs10146207	G	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	42355771	rs721222	C	T	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	42360633	rs6572117	T	C	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr14	42997963	rs9323070	A	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr14	42998026	rs10148466	T	C	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	44973638	rs412408	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.583;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr14	44974189	rs11621923	C	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr14	44974922	rs3825632	A	T	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:47,10:0.18:57
chr14	44975510	rs3809430	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:107,48:0.31:155
chr14	44975511	rs45478391	G	A	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:48,107:0.69:155
chr14	45587186	.	G	GT	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=3.683;QD=1.52;ReadPosRankSum=-0.264;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:115,33:0.22:148
chr14	45633522	rs78455731	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=0.320;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr14	45654410	rs34252356	TCTTA	T	454.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr14	45664721	rs58790242	C	G	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.774;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:123,61:0.33:184
chr14	45664914	rs45478292	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.35;ReadPosRankSum=-0.126;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr14	45665468	rs3736772	C	G	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=6.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.034;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:140,57:0.29:197
chr14	45707041	rs1252966	T	C	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	45711594	rs1266209	T	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.346;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:62,30:0.33:92
chr14	47310983	rs11844549	T	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	47314873	rs149291885	AT	A	632.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr14	47315127	rs1388567	G	A	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:45,75:0.62:120
chr14	47341131	rs2933208	C	G	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	47528470	rs8009302	T	C	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	47528551	rs10144183	T	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.717;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=1.430;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:157,54:0.26:211
chr14	47530841	rs7147260	A	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.835;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr14	47530845	rs7147741	G	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	47582348	rs8006750	T	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.493;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr14	47687187	rs8011854	A	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	47770841	rs2275504	C	G	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	47812374	rs7161720	T	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.596;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr14	50044392	rs2883438	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr14	50065359	rs2281837	C	G	4006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=937;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.508;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:663,262:0.28:925
chr14	50065717	rs2281836	G	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:105,43:0.29:148
chr14	50068299	rs11625804	C	G	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:89,44:0.33:133
chr14	50069282	rs2354444	A	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr14	50070241	.	CTTTTTTT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=-0.199;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	50070384	rs7146398	T	C	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=1.002;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr14	50070426	rs150096267	TAA	T	40.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr14	50070428	.	A	ATTTTTT	40.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr14	50074014	rs2354445	G	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.37;ReadPosRankSum=0.788;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr14	50087753	rs7519	T	C	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-2.362;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:94,47:0.33:141
chr14	50092471	rs9989177	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr14	50100386	rs2985687	T	C	2259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.143;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:554,179:0.24:733
chr14	50100683	rs2985686	C	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-1.585;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:116,43:0.27:159
chr14	50101370	rs2985685	G	A	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:236,107:0.31:343
chr14	50101682	rs2985684	C	G	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-0.753;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:454,182:0.29:636
chr14	50121715	rs45458994	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.692;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr14	50175792	rs11157703	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	50195679	rs4301946	A	G	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr14	50199337	rs60013005	A	AT	745.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr14	50199375	rs10146753	A	C	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	50206702	rs4898631	G	A	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	50241258	rs4499141	A	C	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	50244835	rs4900949	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	50245374	rs6572613	C	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	50247290	rs4900952	G	T	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	50251369	rs10143621	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	50251888	rs8009346	C	T	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	50272975	.	T	TATATATA	143	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	50272977	.	T	A	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	50272979	.	T	A	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	50272981	.	T	A	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	50280577	rs3126194	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	50280688	rs3126195	T	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	50298153	rs11365862	AT	A	86.74	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr14	50298962	rs3100906	T	A	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	50299051	rs56170989	CT	C	244.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr14	50300310	rs3100904	A	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	50319327	rs3126160	T	C	12027.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr14	50319499	rs3100887	G	T	7444.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr14	50459609	rs10134002	T	C	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:41,140:0.77:181
chr14	50459673	rs10134096	T	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:16,49:0.75:65
chr14	50477643	rs4900978	G	C	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr14	50550242	rs2355666	C	T	245.31	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr14	50555664	rs2883738	G	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	50579480	rs79235752	AC	A	1040.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.674;QD=24.20;ReadPosRankSum=0.000;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:12,31:0.72:43
chr14	50583083	rs11157729	G	T	8465.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:163,378:0.70:541
chr14	50585248	rs2227276	C	T	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:72,141:0.66:213
chr14	50585574	rs10658395	C	CA	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=1.488;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr14	50596862	rs3759597	T	C	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	50605267	rs35961944	A	AT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.971;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr14	50611845	rs2064667	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	50612401	rs1014879	T	C	155.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	50612414	rs726797	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	50616878	rs2229869	G	A	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:205,91:0.31:296
chr14	50619927	rs11628935	A	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr14	50623657	rs3736759	G	A	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	50623679	rs3736760	G	A	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.89;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	50623683	rs3736761	A	G	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.89;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	50626836	rs4900992	C	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	50641347	rs10782418	T	G	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	50647250	rs199667374	TTA	T	270.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.603;QD=22.56;ReadPosRankSum=-1.451;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr14	50649088	rs2024811	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr14	50655146	rs139780957	CTATT	C	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr14	50670965	rs1075537	G	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	50671133	rs12888783	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.790;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:72,35:0.33:107
chr14	50697878	rs2273326	C	T	4501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-1.870;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:85,235:0.73:320
chr14	50704331	rs4901000	C	T	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr14	50732042	rs12432673	G	A	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr14	50745123	rs10658363	A	ATTACTT	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	50750577	rs12433038	A	G	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=1.409;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	50760030	rs12894758	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.732;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr14	50769717	rs2297995	G	A	8911.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr14	50769868	rs1962578	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	50778816	rs2275591	A	C	16015.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=-1.444;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:2,630:1.00:632
chr14	50786004	rs12433794	A	G	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr14	50788213	rs2275592	C	T	6329.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	50789078	rs11357954	GT	G	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.77;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	50789101	rs10685266	A	AATAC	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	50789578	rs8017316	G	C	178.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	50792273	rs8003113	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	50798743	rs4901016	G	A	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	50799126	rs7161563	G	C	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	50799338	rs7141289	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	50801102	rs7141402	G	A	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	50802727	rs7148089	A	C	11264.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr14	50802840	rs7148292	A	G	9214.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr14	50808802	rs7142237	G	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	50809873	rs3049935	C	CTTTT	458.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	50809895	rs2226054	G	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	50824839	rs11157737	G	A	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:173,80:0.32:253
chr14	50824954	rs11157738	T	C	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=0.521;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:114,59:0.34:173
chr14	50825033	rs11570816	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	50828838	rs10137638	A	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	50844367	rs59930863	G	GA	3993.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	50844856	rs1890978	A	G	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	50845231	rs7151046	C	A	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	50856927	rs10131126	A	G	4140.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:99,190:0.66:289
chr14	50857189	rs2015870	C	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:96,48:0.33:144
chr14	50863716	rs10136595	C	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	50877491	rs1265878	C	A	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	50907128	rs17718015	A	G	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr14	50909357	rs17718040	T	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr14	50910420	rs61984270	A	C	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=0.912;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr14	50929508	rs11624731	C	A	6751.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr14	50930609	.	CAAAAAAAAAAAAAAAAA	C	190.82	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.16;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	50942047	rs12717408	C	T	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	50948995	rs144754795	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=-1.068;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	50949196	rs11364906	TA	T	819.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	50971446	rs7146431	C	T	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	51057727	rs1060197	G	A	5937.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr14	51058234	rs2934684	G	T	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	51060452	rs2291672	A	G	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	51062236	.	TTCTC	T,TTC	3621.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.77;ReadPosRankSum=-0.362;SOR=0.547;set=HC	GT:AD:AF:DP	1/2:1,21,92:0.18,0.81:114
chr14	51062455	rs10131107	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	51087263	rs11157759	A	G	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	51089727	rs3736307	G	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	51096610	rs3080579	G	GTTCTT	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	51097536	rs2934692	G	A	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	51107452	rs871643	T	C	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	51107737	rs4075253	G	A	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	51196142	rs2984274	T	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.34;QD=25.19;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	51202311	rs2295847	G	C	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:99,23:0.19:122
chr14	51204996	rs11376	C	T	5698.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:114,270:0.70:384
chr14	51206021	rs3015485	A	G	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	51208236	rs76858548	T	TGTA	1954.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.54;SOR=2.780;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	51223106	rs2295846	G	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.269;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr14	51223789	rs2073347	C	T	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.304;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-0.367;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:355,97:0.21:452
chr14	51224374	rs12882191	T	G	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	51224658	rs2073348	T	A	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr14	51225132	rs2073349	G	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:181,64:0.26:245
chr14	51226439	rs12892462	C	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	51228682	rs6572694	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr14	51230431	rs150650334	CTT	C	845.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.537;QD=23.49;ReadPosRankSum=-2.313;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:5,31:0.86:36
chr14	51230445	rs117261593	T	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.102;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.030;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=-0.814;QD=3.67;ReadPosRankSum=-1.290;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr14	51237701	rs17793018	A	G	6470.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	51239067	rs8020503	C	G	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr14	51245666	rs7143959	T	C	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	51289874	rs1547077	G	T	2318.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.102;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=-1.803;QD=18.85;ReadPosRankSum=0.165;SOR=0.551;set=HC	GT:AD:AF:DP	1/1:13,110:0.89:123
chr14	51290141	rs9672090	A	G	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	51297448	rs201889202	G	GC	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.64;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	51324884	rs2027343	A	G	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:224,108:0.33:332
chr14	51324894	rs72242050	AAG	A	1074.73	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:165,73:0.31:238
chr14	51338875	rs11850408	A	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	51344584	rs10672040	C	CAAA	986.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.55;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	51347023	rs12889998	T	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	51347107	rs2185300	G	A	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	51348281	.	C	CT	338.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.722;QD=13.03;ReadPosRankSum=0.305;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:4,22:0.85:26
chr14	51353493	rs7158183	T	C	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	51355517	rs10144606	C	A	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	51370852	rs34800262	C	G	1819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.454;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:295,121:0.29:416
chr14	51382358	rs1890701	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	51446216	rs2275462	T	G	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	51475794	rs2297889	A	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:28,76:0.73:104
chr14	51491956	rs11848681	T	C	5119.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	51492135	rs11268748	C	CCACACAGGTGTTTT	4218.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	51710508	rs35110538	T	TA	289.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	51710551	rs10131881	A	T	653.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.311;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.23;ReadPosRankSum=-0.511;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr14	51710552	rs45482399	A	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.485;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=1.874;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr14	51712092	rs4606635	T	C	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:29,71:0.71:100
chr14	51713995	rs146927855	A	ATAT	64.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,4:0.15:26
chr14	51716161	rs59489282	GT	G	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.905;QD=6.73;ReadPosRankSum=1.093;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:31,33:0.52:64
chr14	51716188	rs7161242	T	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	51716467	rs7160810	G	A	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	51720906	rs11157811	T	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	52182081	rs731715	T	A	2588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.049;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:415,171:0.29:586
chr14	52294397	rs6572795	G	A	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	52308314	rs10498437	G	A	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.292;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:140,56:0.29:196
chr14	52383228	rs11322270	GA	G	805.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr14	52418655	rs3825601	G	A	5858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=1.791;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:74,270:0.78:344
chr14	52477835	rs1151579	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr14	52495375	rs7144352	C	T	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	52496387	rs2273430	C	A	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	52496407	rs2273431	C	T	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	52505360	rs753051	A	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-1.383;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr14	52505375	rs753050	A	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr14	52505771	rs2029978	TT	AG	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	52505811	rs2029976	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr14	52507429	rs3742536	A	G	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.954;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:68,35:0.34:103
chr14	52509101	rs1982963	G	A	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=2.404;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:206,81:0.28:287
chr14	52509483	rs56834750	TG	CA	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.539;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=1.494;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:127,35:0.22:162
chr14	52509788	rs3818187	A	G	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr14	52520368	rs2101919	C	T	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr14	52520746	rs35657569	G	T	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:57,171:0.75:228
chr14	52520853	rs904059	A	G	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr14	52534997	rs7151874	T	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	52535387	rs984051	A	C	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	52535415	rs984050	G	A	7386.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	52535648	rs3920038	G	T	7796.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr14	52536512	rs1497082	T	C	11165.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.49;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,438:1.00:438
chr14	52736310	rs11157908	C	T	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	52741646	rs17125273	G	A	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr14	52781195	rs1254598	G	A	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	52794234	rs708502	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	52906081	rs2249922	T	G	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:96,153:0.61:249
chr14	52906179	rs2249925	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr14	52907353	rs1952254	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr14	52937255	rs7155490	C	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-0.631;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:23,51:0.69:74
chr14	52957731	.	G	GA	399.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.135;QD=7.14;ReadPosRankSum=-0.434;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr14	52981552	rs11387534	G	GA	655.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.847;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.511;QD=14.58;ReadPosRankSum=-0.220;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:7,38:0.84:45
chr14	53019944	rs147785041	A	G	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-1.156;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr14	53063907	rs79976513	C	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr14	53098902	rs762063	G	A	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	53100760	rs11157925	A	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	53110384	rs4898762	T	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr14	53120048	rs141108666	GAATTA	G	1017.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,26:0.72:36
chr14	53124807	rs3783453	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr14	53130317	.	CA	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=6.014;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.375;QD=1.08;ReadPosRankSum=-1.596;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr14	53130507	rs17125636	T	C	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:132,48:0.27:180
chr14	53133036	rs12885338	T	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	53150695	rs11621485	G	C	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=-1.979;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,38:0.67:57
chr14	53197042	rs2277493	G	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	53325090	rs6572868	C	T	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	53326454	rs3818453	C	A	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	53345266	rs2357946	G	C	8900.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr14	53345378	rs2357947	G	A	7592.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr14	53348540	rs62003529	T	G	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:62,111:0.64:173
chr14	53415359	rs17125973	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr14	53513478	rs10599915	AAG	A	4691.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	53522324	rs5808701	T	TA	1384.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	53525392	rs915436	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	53525427	rs12882412	C	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	53529669	rs4898778	A	T	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	53539471	rs875663	A	G	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.52;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	53619463	rs2358188	G	A	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:1,195:0.99:196
chr14	53619480	rs140904345	T	TGCCGCC	4260.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr14	53619544	rs2358189	G	A	5801.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr14	54417522	rs17563	A	G	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:50,92:0.65:142
chr14	54418986	rs2761880	T	C	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	54863577	rs2235961	G	A	1423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=-0.838;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:25,64:0.72:89
chr14	54869027	rs376765030	CGT	C,CGTGT	871.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=-0.630;SOR=0.687;set=HC	GT:AD:AF:DP	1/2:10,29,24:0.46,0.38:63
chr14	54875514	rs2179896	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr14	54875591	rs4251625	GT	G	49.74	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	54877819	rs2143958	C	G	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-0.348;QD=16.84;ReadPosRankSum=-1.075;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr14	54879473	rs2268332	G	T	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:37,86:0.70:123
chr14	54886585	rs4251678	AC	A	598.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr14	54886589	rs4251679	A	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr14	54955613	rs201519423	C	T	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.613;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:265,81:0.23:346
chr14	54976608	.	C	CT	2799.73	.	AC=1;AF=0.500;AN=2;DP=137;set=Intersection	GT:AD:AF:DP	0/1:56,79:0.59:135
chr14	55034879	rs3742558	T	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.67;ReadPosRankSum=0.466;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr14	55154053	rs11626473	C	T	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=-0.107;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:33,76:0.70:109
chr14	55168673	rs1022754	A	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	55218161	rs2295820	A	C	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.07;ReadPosRankSum=-0.888;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:9,31:0.78:40
chr14	55218435	rs2295822	A	G	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	55221345	rs911612	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	55221543	rs11627203	T	C	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:60,123:0.67:183
chr14	55241531	rs35827295	CA	C	576.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.769;QD=12.82;ReadPosRankSum=2.173;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:4,41:0.91:45
chr14	55241558	rs72713435	G	A	945.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.863;QD=8.15;ReadPosRankSum=-0.615;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:84,32:0.28:116
chr14	55241559	rs72713436	A	C	945.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.848;QD=7.95;ReadPosRankSum=-0.261;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:87,32:0.27:119
chr14	55255673	rs11431	C	T	14875.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,573:1.00:573
chr14	55309773	.	C	A	636.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr14	55310492	rs841	G	A	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.907;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:195,66:0.25:261
chr14	55454155	.	C	CATATAT	544	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=544;QD=277.0;SC=ATGATATTTACATATATATAT;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=2;WE=55454163;WS=55454145;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chr14	55457988	rs72715571	G	C	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:276,106:0.28:382
chr14	55473900	rs9323275	T	C	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr14	55474190	rs45459500	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.68;ReadPosRankSum=0.217;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr14	55493350	rs1187878	T	C	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:36,58:0.62:94
chr14	55493408	rs1201378	T	C	6087.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:110,279:0.72:389
chr14	55530120	rs3742564	T	C	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.582;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr14	55605005	.	G	C	6406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-0.145;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:144,301:0.68:445
chr14	55612006	rs71659941	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.028;QD=0.64;ReadPosRankSum=-0.914;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:72,21:0.23:93
chr14	55847573	.	GTA	G	130	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5124;HP=2;HapScore=2;MGOF=13;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=130;QD=34.0;SC=TTCTTTGTGTGTATATATATA;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=4;WE=55847582;WS=55847563;set=Platypus	GT:AD:AF:DP	0/1:3,4:0.57:7
chr14	55902542	rs7149317	G	A	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	55907025	rs8020152	T	A	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	55907172	rs8019270	C	G	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	56100160	rs10135907	G	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	56108033	rs2341890	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	56126456	rs7160678	C	A	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	56142480	rs3736877	A	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	56145061	.	TC	T	1134.73	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:69,48:0.41:117
chr14	56167983	rs11450830	A	AT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=1.577;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:68,17:0.20:85
chr14	56755425	rs34574403	C	CA	79.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	56763886	rs1152466	G	A	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=1.313;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:203,83:0.29:286
chr14	56958173	rs1889382	C	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	57046829	rs2275025	C	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,38:0.31:122
chr14	57052511	rs3737171	G	T	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:279,104:0.27:383
chr14	57070501	rs10782433	A	G	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	57082648	rs2275024	A	G	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=0.636;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chr14	57092038	rs2274706	A	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,32:0.36:89
chr14	57099859	rs1041316	G	A	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	57101560	rs112611071	C	CA	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.222;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.043;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr14	57101682	rs913742	A	G	10986.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.55;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr14	57114285	rs34046661	C	CA	239.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr14	57116979	rs1958530	A	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	57271127	rs2277499	G	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr14	57863385	rs12894584	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr14	57866623	rs2152360	A	G	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=1.300;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:13,41:0.76:54
chr14	57876265	rs11620639	G	A	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr14	57938124	rs1152531	C	T	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:54,116:0.68:170
chr14	57938260	rs1152530	T	C	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr14	57945689	rs1152525	G	A	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:31,66:0.68:97
chr14	57947421	rs34960436	G	A	4162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-0.184;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:111,205:0.65:316
chr14	57948380	rs1152522	T	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr14	57957654	rs1203339	T	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.15;ReadPosRankSum=0.723;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr14	57957664	rs1203338	T	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.10;ReadPosRankSum=0.222;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr14	57960144	rs268815	C	G	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.31;ReadPosRankSum=-0.873;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr14	57960152	rs268816	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.06;ReadPosRankSum=-1.691;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr14	58056257	rs1190313	G	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-1.743;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr14	58060586	rs180872	C	T	113.03	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr14	58060598	rs238377	C	G	145.79	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr14	58060862	rs17724076	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=2.023;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:96,32:0.25:128
chr14	58060976	rs149152522	C	T	456.85	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr14	58471355	rs2295139	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=-1.718;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	58471378	.	C	CT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=0.101;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr14	58471445	rs17094192	C	G	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:30,99:0.77:129
chr14	58471699	rs727203	T	C	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:16,57:0.78:73
chr14	58563694	rs2273442	G	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	58583166	rs111439524	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr14	58599674	rs149751032	GGT	G	126.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:50,10:0.17:60
chr14	58600106	.	T	TA	53.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=2.022;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr14	58600107	rs2180520	T	A	425.78	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.28;ReadPosRankSum=-0.060;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr14	58605790	rs3829765	G	A	7868.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr14	58666882	rs61975916	A	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.985;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-1.540;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:86,19:0.18:105
chr14	58669660	rs75291796	AT	A	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-2.274;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr14	58690427	rs111531986	T	TA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=1.217;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:84,23:0.21:107
chr14	58690506	rs200082520	C	G	2033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=1.924;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:41,97:0.70:138
chr14	58697795	rs111932447	C	CAG	622.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr14	58724817	rs35486640	C	CTT	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	58730626	rs2348071	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr14	58737766	rs8005100	A	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	58758279	rs149972156	TAC	T	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.455;QD=0.14;ReadPosRankSum=2.611;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:522,57:0.10:579
chr14	58758331	rs11461912	G	GT	10233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.860;QD=23.63;ReadPosRankSum=2.809;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:116,317:0.73:433
chr14	58766617	rs1957038	A	G	3767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-0.528;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:110,175:0.61:285
chr14	58770389	rs10145481	C	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:53,85:0.62:138
chr14	58771632	rs7155580	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr14	58811588	.	TTTTA	T	58.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,3:0.23:13
chr14	58831142	rs1051858	A	G	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.542;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr14	58832185	.	CTT	C	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.034;QD=5.35;ReadPosRankSum=-1.430;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr14	58862871	.	G	A	461.77	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr14	58869510	rs7153357	T	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	58907006	rs138818880	TTC	T	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.011;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.823;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:64,10:0.14:74
chr14	58907825	.	AT	A	52	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=8;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=3;NR=1;PP=52;QD=17.25;SC=AATATATACAATTTTTTTTCA;SbPval=0.68;Source=Platypus;TC=4;TCF=3;TCR=1;TR=4;WE=58907833;WS=58907815;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	58907908	rs71107949	CTT	C	233.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.671;QD=12.97;ReadPosRankSum=0.545;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr14	58917225	rs1748970	C	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	58917454	rs1748971	G	A	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	58920240	rs1748975	A	C	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	58923395	rs1743721	G	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	58932772	rs1743716	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	58934371	rs1632390	G	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	58937416	rs1748986	T	C	8880.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr14	58937575	rs113069874	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.711;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr14	58953617	rs1743702	T	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	58953746	rs1617510	C	G	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	58954588	rs5808973	T	TA	1283.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr14	59010649	rs28535751	T	C	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-0.854;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:55,33:0.38:88
chr14	59105188	rs2003021	C	T	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr14	59112475	rs863091	C	T	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-2.970;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:260,86:0.25:346
chr14	59112732	rs17832998	C	T	5948.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:94,271:0.74:365
chr14	59113223	rs17094821	T	G	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.700;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:189,74:0.28:263
chr14	59113430	rs698025	G	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.845;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.881;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:145,44:0.23:189
chr14	59789586	rs8021976	A	G	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr14	59789727	rs8022614	G	A	6656.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr14	59790749	.	G	GA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-1.732;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr14	59797115	rs941883	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	59797235	rs941884	A	G	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	59798473	rs2146012	C	G	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	59814502	rs941886	C	A	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	59820780	rs10713024	AT	A	132.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.856;QD=8.85;ReadPosRankSum=-1.233;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr14	59834048	rs10130669	C	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	59978266	rs10658080	T	TAAAAA	453.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	59978366	rs10635523	A	ATG	8909.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr14	60004844	rs4261431	C	T	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	60007366	.	C	CT	61.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.15;ReadPosRankSum=1.074;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr14	60031996	rs1980580	G	A	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	60032046	rs1980579	A	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	60034840	rs982862	G	C	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	60043422	rs4898996	A	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	60063472	rs6573275	A	G	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr14	60071972	rs1950787	T	C	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	60072023	rs1950786	G	A	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	60394828	rs9323357	G	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	60405385	rs34650525	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	60411584	rs5809056	TCA	T	407.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.39;ReadPosRankSum=0.679;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr14	60426771	rs150683	T	C	57.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	60444652	rs219328	A	T	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	60448779	rs76209613	G	A	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.243;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:97,44:0.31:141
chr14	60451770	rs219341	G	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	60451816	rs219342	G	A	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	60468661	rs219369	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	60474859	rs35427175	G	A	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=1.085;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:70,29:0.29:99
chr14	60483598	rs219388	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	60484931	rs219391	C	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	60485240	rs219392	G	A	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.56;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	60498876	rs219409	C	T	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	60519920	rs95425	C	T	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	60530160	rs201841893	TA	T	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.415;QD=2.40;ReadPosRankSum=-0.360;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:47,29:0.38:76
chr14	60574539	rs12465	A	G	8632.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr14	60581367	.	A	G	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=74.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-1.014;SOR=6.993;set=HC	GT:AD:AF:DP	0/1:34,32:0.48:66
chr14	60581673	rs35459418	CT	C	1893.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=8.436;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.381;QD=18.39;ReadPosRankSum=1.674;SOR=0.070;set=HC	GT:AD:AF:DP	1/1:4,99:0.96:103
chr14	60581863	rs219314	G	A	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	60581935	rs150687	C	T	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr14	60582053	rs150688	G	A	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	60587879	.	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.903;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr14	60616914	.	CA	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.182;QD=1.12;ReadPosRankSum=-1.726;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:72,23:0.24:95
chr14	60743833	rs140425117	AAACT	A	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.265;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr14	60864408	.	A	T	47	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=10;HapScore=4;MGOF=14;MMLQ=26;MQ=56.08;NF=3;NR=0;PP=47;QD=27.2570708491;SC=TCATAATTTAAAAAAAAAAAC;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=3;WE=60864416;WS=60864396;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr14	60864583	rs1254293	G	T	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	60900113	rs1254316	C	T	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	60903757	rs1254319	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-1.556;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr14	60921673	rs1262175	T	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.13;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	60923783	rs11625921	C	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	60928201	rs1956549	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	60932569	rs10529202	AACACACACACACACACACACACAC	AAC,A	2037.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=59;set=Intersection	GT:AF:DP	1/1:1.00:52
chr14	60932752	rs12586711	G	A	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	60933539	rs1126103	T	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	60944959	rs11845369	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	60975956	rs1956558	T	C	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	60978071	rs1061108	C	G	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	61118783	rs4899014	C	T	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	61124940	rs10143202	A	G	8906.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr14	61180657	rs3742636	T	G	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	61184711	rs181789319	C	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr14	61285352	rs973063	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.286;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr14	61445967	rs7142228	A	G	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	61448049	rs17097938	C	G	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:110,42:0.28:152
chr14	61448510	rs2296924	A	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	61449167	rs2296923	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	61449328	rs976272	T	A	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr14	61451329	rs2182985	G	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	61451589	rs2149303	C	T	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	61453739	rs33922839	C	CT	5373.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	61453942	rs12891495	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr14	61497058	.	T	C	52	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=2;MGOF=48;MMLQ=27;MQ=60.0;NF=2;NR=2;PP=52;QD=21.6928031368;SC=TAATCTTCCATATGTTGTCAT;SbPval=0.68;Source=Platypus;TC=4;TCF=2;TCR=2;TR=4;WE=61497066;WS=61497057;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	61497147	rs1465146	A	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	61497285	rs1465145	T	C	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	61509924	rs2296921	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	61643045	rs4902033	C	A	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.810;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:411,134:0.25:545
chr14	61747644	rs3196765	A	G	7607.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr14	61789318	rs1886466	C	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	61915751	rs2296273	G	A	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	61952429	rs1536016	T	C	12912.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr14	61995673	rs2463117	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	61995691	.	C	CGTGTGTGTGT,CGTGTGTGT	830.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=30;set=Intersection	GT:AF:DP	1/1:1.00:19
chr14	61997226	rs1088680	C	T	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	61997393	rs1088679	T	C	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	62037297	rs798792	C	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	62205175	rs10138153	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	62208005	rs4902080	T	C	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	62212675	rs4902082	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.835;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr14	62213848	rs2057482	T	C	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	62213929	rs5809121	A	AT	373.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	62233806	rs1254677	A	G	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	62462766	rs8019076	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr14	62463129	rs17099370	G	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:154,70:0.31:224
chr14	62463214	rs1889806	C	T	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.602;QD=3.40;ReadPosRankSum=0.301;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:127,44:0.26:171
chr14	62542243	.	G	T	55.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	62546001	rs1892051	C	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr14	62546256	rs2353777	C	T	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.132;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:88,32:0.27:120
chr14	62547469	rs7148330	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr14	62550877	rs2353778	G	A	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	63174616	rs7161127	T	C	8726.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr14	63179333	rs12435381	C	T	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.955;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:223,75:0.25:298
chr14	63269317	rs12588427	T	C	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	63779846	rs5809192	G	GA	4455.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr14	63784407	rs11382440	A	AG	15080.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=36.52;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr14	63858433	rs113580022	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr14	63860788	.	CTT	C	33.25	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	63881729	.	TTATA	T	28	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=1;PP=28;QD=37.0;SC=TAACTTATGTTTATATATATA;SbPval=0.34;Source=Platypus;TC=3;TCF=2;TCR=1;TR=1;WE=63881740;WS=63881719;set=Platypus	GT:AD:AF:DP	0/1:2,1:0.33:3
chr14	64009436	rs10142811	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.354;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr14	64009489	rs1271563	T	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=1.307;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:77,25:0.25:102
chr14	64009521	rs1255720	A	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.274;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:87,29:0.25:116
chr14	64066326	.	C	T	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-8.235;QD=2.42;ReadPosRankSum=-2.188;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:204,28:0.12:232
chr14	64066328	.	C	T	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-8.111;QD=3.10;ReadPosRankSum=-2.148;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:205,29:0.12:234
chr14	64066340	.	A	G	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-7.796;QD=2.70;ReadPosRankSum=-0.931;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:243,37:0.13:280
chr14	64066352	.	T	A	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-7.949;QD=2.90;ReadPosRankSum=-0.385;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:264,43:0.14:307
chr14	64066363	.	G	A	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-8.493;QD=3.01;ReadPosRankSum=1.224;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:293,46:0.14:339
chr14	64066367	.	A	T	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-8.577;QD=2.86;ReadPosRankSum=1.896;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:299,46:0.13:345
chr14	64066373	.	G	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-8.563;QD=2.75;ReadPosRankSum=2.599;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:298,46:0.13:344
chr14	64066379	rs117229690	C	T	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-8.757;QD=2.65;ReadPosRankSum=3.302;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:314,46:0.13:360
chr14	64066394	.	AC	GT	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=0.577;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-8.866;QD=2.52;ReadPosRankSum=3.494;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:320,46:0.13:366
chr14	64066398	.	G	C	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DP=368;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-8.853;QD=2.53;ReadPosRankSum=3.058;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:319,46:0.13:365
chr14	64066402	.	A	G	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0.000;DP=359;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-8.730;QD=2.69;ReadPosRankSum=2.009;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:310,46:0.13:356
chr14	64066424	rs200323309	T	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-6.071;QD=2.40;ReadPosRankSum=-0.698;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:277,38:0.12:315
chr14	64066431	rs75569502	C	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-6.388;QD=2.02;ReadPosRankSum=-0.766;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:258,32:0.11:290
chr14	64066451	.	A	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=3.024;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-4.535;QD=0.78;ReadPosRankSum=-0.514;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:216,21:0.09:237
chr14	64066453	rs74383752	G	A	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=3.045;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-4.471;QD=0.80;ReadPosRankSum=-0.866;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:210,21:0.09:231
chr14	64066471	rs200681506	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.750;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=6.388;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-5.353;QD=0.46;ReadPosRankSum=-2.437;SOR=1.786;set=HC	GT:AD:AF:DP	0/1:172,12:0.07:184
chr14	64066472	.	T	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=8.369;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-5.211;QD=0.48;ReadPosRankSum=-3.118;SOR=1.836;set=HC	GT:AD:AF:DP	0/1:163,12:0.07:175
chr14	64375985	rs2275018	G	T	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:50,101:0.67:151
chr14	64421392	rs1255874	G	A	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr14	64423187	rs2792201	C	A	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:76,130:0.63:206
chr14	64428154	rs1255884	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr14	64434652	rs1255891	G	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr14	64443258	rs34440267	CT	C	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=3.491;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:64,67:0.51:131
chr14	64444876	rs1255896	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr14	64449237	rs10558054	CA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.306;QD=1.36;ReadPosRankSum=-0.593;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr14	64457638	rs1255908	T	G	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-0.064;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr14	64462007	rs1255912	A	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-2.847;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr14	64468918	rs12147217	G	A	40.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr14	64470159	rs4027385	ACT	A	754.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr14	64491695	rs4902264	T	C	6340.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr14	64494278	rs10151127	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	64496749	rs4027402	C	T	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	64496872	rs3866737	G	C	115.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	64497930	rs4027404	G	A	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	64498037	rs4027405	G	A	5501.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	64501192	rs9783605	G	A	30.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	64519035	rs1890908	A	G	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr14	64519455	rs3829767	A	G	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	64520416	rs10138253	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	64522550	rs10676670	T	TAATAA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	64522674	rs8010911	G	C	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	64522843	rs8010699	A	G	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	64523094	rs7153376	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	64532107	rs1255972	A	G	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	64537295	rs1255965	T	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	64537657	rs1255964	G	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	64542872	rs1255960	G	A	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	64551688	rs1255953	C	T	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	64565582	rs9323444	T	C	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=0.037;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr14	64568797	rs12587140	G	A	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=1.304;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr14	64612845	rs11629287	C	T	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	64612858	rs10151658	C	A	4526.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.712;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=-0.534;SOR=0.343;set=HC	GT:AD:AF:DP	1/1:1,178:0.99:179
chr14	64630304	.	A	G	750.77	.	AC=1;AF=0.500;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	0/1:81,45:0.36:126
chr14	64637147	rs7161192	C	A	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr14	64640665	rs7148122	C	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	64641934	rs117497645	A	G	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr14	64655161	rs1255986	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr14	64656682	rs35676590	A	ATT	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-0.696;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr14	64656855	rs2256191	T	C	6204.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	64657684	rs1255988	C	A	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:65,132:0.67:197
chr14	64674981	rs1152595	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr14	64676098	rs1152592	A	G	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	64680848	rs1152591	A	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	64681193	rs1152590	C	T	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	64681849	rs141530850	G	GA	312.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr14	64686125	rs35648226	G	T	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:25,58:0.70:83
chr14	64686207	rs915057	A	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr14	64688175	rs1152588	G	C	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr14	64691644	rs35455974	AT	A	288.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.694;QD=8.75;ReadPosRankSum=1.133;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,26:0.79:33
chr14	64694195	rs928554	C	T	5763.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	64699816	rs4986938	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	64746933	rs34967796	G	GA	377.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	64814311	rs1256112	C	T	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	64814381	rs79865763	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr14	64855041	rs1076991	T	C	7217.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr14	64882380	rs1950902	A	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:166,60:0.27:226
chr14	64894362	rs11627525	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr14	64902493	rs3818240	T	C	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:232,114:0.33:346
chr14	64905976	rs45618332	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-2.441;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:79,21:0.21:100
chr14	64907994	rs11629354	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr14	64908244	.	G	T	611.77	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr14	64908651	rs8003567	A	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr14	64911627	rs1256143	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	64926433	rs75480958	GTGCT	G	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	64935411	rs2230491	C	T	7816.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,307:1.00:308
chr14	64935720	rs1256149	C	T	9804.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr14	64947181	rs8003790	C	T	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	64953580	rs10132969	T	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	64953591	rs10143839	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	64988114	rs10624421	C	CAA	1220.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	64988279	rs28626711	A	G	9295.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr14	64988924	rs10133411	T	C	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr14	65008251	rs1063391	C	T	14963.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,581:1.00:581
chr14	65009534	rs35270454	C	CT	1755.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.173;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.000;QD=16.41;ReadPosRankSum=-1.198;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:13,94:0.88:107
chr14	65016702	rs7156953	T	G	5522.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr14	65032226	rs8007313	C	T	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr14	65053897	.	TA	T	1613.73	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr14	65054166	.	CTTTTTTTT	C	280.75	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	65068221	rs11158545	C	A	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr14	65195794	rs229644	T	C	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:128,59:0.32:187
chr14	65197126	rs229626	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:85,29:0.25:114
chr14	65197143	rs229625	C	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:66,24:0.27:90
chr14	65197767	rs229624	G	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:300,147:0.33:447
chr14	65203499	rs229653	G	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr14	65207819	rs17767238	C	T	3886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=-1.353;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:79,179:0.69:258
chr14	65208026	rs229650	T	C	2378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=1.453;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:322,150:0.32:472
chr14	65209867	rs229649	C	T	3185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=860;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.597;QD=3.73;ReadPosRankSum=1.432;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:628,226:0.26:854
chr14	65219095	rs71444676	CAGAG	C	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.388;QD=11.85;ReadPosRankSum=0.132;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr14	65234287	.	T	G	63.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr14	65245863	rs1741489	C	G	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:88,179:0.67:267
chr14	65245956	rs1741488	C	T	8307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.21;ReadPosRankSum=-0.684;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:105,212:0.67:317
chr14	65245962	rs1741487	A	G	8257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.22;ReadPosRankSum=0.305;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:105,210:0.67:315
chr14	65246006	rs1741486	G	A	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:62,144:0.70:206
chr14	65246040	rs2357726	G	A	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:36,92:0.72:128
chr14	65246350	rs1741485	A	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr14	65246623	rs1626923	T	C	9477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-1.260;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:191,437:0.70:628
chr14	65249153	rs10132778	T	C	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-1.657;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:269,68:0.20:337
chr14	65250939	rs229634	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	65253232	rs77806	T	C	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:63,183:0.74:246
chr14	65260227	rs229591	T	G	15482.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr14	65263300	rs229587	C	T	6832.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr14	65263347	rs229586	C	T	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr14	65267469	rs230703	T	C	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	65267901	rs170736	C	T	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	65268167	rs230704	C	T	8202.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr14	65268510	rs74666863	C	T	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.616;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:61,21:0.26:82
chr14	65269174	rs45607231	G	A	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	65270272	rs17767579	C	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	65270540	rs374428815	A	G	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:15,56:0.79:71
chr14	65271634	rs1353857	G	A	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr14	65271650	rs229581	A	G	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	65289978	rs179338	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	65381022	rs72726294	C	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:101,70:0.41:171
chr14	65392722	rs72726300	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr14	65392918	rs2147615	G	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr14	65407000	rs2071566	C	T	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.579;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:230,78:0.25:308
chr14	65410001	rs17880939	T	C	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.835;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:197,56:0.22:253
chr14	65410200	rs3831077	CT	C	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=0.562;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr14	65415366	rs1886506	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr14	65415472	rs141876654	TGAAA	T	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-2.035;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:99,21:0.17:120
chr14	65418475	rs17752452	G	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr14	65419293	rs45454295	A	G	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.599;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:180,54:0.23:234
chr14	65453493	rs3215788	TG	T	62.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr14	65470831	rs12587546	A	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	65478948	rs2296322	T	G	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr14	65488655	rs117861584	C	T	4071.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:64,185:0.74:249
chr14	65499450	rs7148144	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:98,37:0.27:135
chr14	65499463	rs60038853	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:81,34:0.30:115
chr14	65507654	rs45563031	C	T	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:44,121:0.73:165
chr14	65510971	rs45565742	C	T	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:59,131:0.69:190
chr14	65560666	rs191223151	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.556;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr14	65568197	rs117197166	C	T	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-1.914;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:134,51:0.28:185
chr14	65733748	.	CTTCTTTCTTTCTTTCTTTCTTTCTTTCT	C	388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.44;ReadPosRankSum=0.229;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr14	65801811	rs12881755	A	G	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	65878807	rs1953416	C	T	12319.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr14	66028446	rs2229677	A	G	7141.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr14	66028505	rs3825639	T	C	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	66082573	rs8012278	A	G	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	66209190	rs1054218	C	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	66480247	rs1807442	CA	TC	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-14.219;QD=1.94;ReadPosRankSum=-2.435;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:278,33:0.11:311
chr14	66480294	rs111248740	G	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-8.964;QD=1.42;ReadPosRankSum=1.136;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:183,39:0.18:222
chr14	66480351	rs111248515	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.444;QD=4.32;ReadPosRankSum=-0.973;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:114,46:0.29:160
chr14	66971950	rs72724564	C	T	12161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=897;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-0.537;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:313,581:0.65:894
chr14	66974474	rs928553	T	C	4192.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:69,188:0.73:257
chr14	67147816	rs3759753	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=-0.716;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,30:0.70:43
chr14	67555878	rs12323748	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	67671482	rs151256654	C	CT	6892.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:103,174:0.63:277
chr14	67671483	rs56352800	A	C	3780.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=-0.158;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:105,171:0.62:276
chr14	67671483	.	ACA	CCT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=33;NR=33;PP=2944;QD=20;SC=TACGAATAGCACAGACATCAC;SbPval=0.43;Source=Platypus;TC=129;TCF=68;TCR=61;TR=66;WE=67671493;WS=67671471;set=Platypus	GT:AD:AF:DP	0/1:63,66:0.51:129
chr14	67671485	rs55981040	A	T	6922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.17;ReadPosRankSum=-0.038;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:104,171:0.62:275
chr14	67807242	rs33973037	TA	T	2703.73	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:46,172:0.79:218
chr14	67814219	rs71129819	C	CT	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-1.400;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr14	67819567	rs10718799	CA	C	92.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.44;ReadPosRankSum=-0.282;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr14	67848479	rs34614329	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.429;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:84,22:0.21:106
chr14	67878717	rs12888674	A	G	11954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.982;ClippingRankSum=0.000;DB;DP=882;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=0.214;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:292,559:0.66:851
chr14	67912792	rs3742855	A	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	68022410	rs3742868	C	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	68023869	rs10873206	G	A	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr14	68028538	rs11628043	A	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	68029313	rs2236235	G	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:79,154:0.66:233
chr14	68029386	rs1885043	G	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:197,73:0.27:270
chr14	68036853	rs2273593	G	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr14	68038697	rs2236234	C	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:13,41:0.76:54
chr14	68038729	rs2236233	A	G	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	68038779	rs2236232	T	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:98,37:0.27:135
chr14	68039027	rs2236231	A	G	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:56,121:0.68:177
chr14	68040389	rs11625701	T	C	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr14	68042255	rs4902490	A	G	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=0.569;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:48,99:0.67:147
chr14	68042282	rs75926470	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:58,30:0.34:88
chr14	68042496	rs4902491	A	G	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr14	68044005	rs4902492	C	T	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr14	68045753	rs7152499	T	C	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr14	68045840	rs10635755	C	CTTCT	5733.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:81,144:0.64:225
chr14	68045935	rs6573781	G	A	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:49,92:0.65:141
chr14	68053259	rs10144151	T	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr14	68053802	rs734028	T	C	10250.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:2,429:1.00:431
chr14	68053977	rs6573783	A	C	8440.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr14	68066949	rs11547225	G	A	6782.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:112,313:0.74:425
chr14	68066979	rs7154825	C	T	7290.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr14	68113293	rs742869	G	A	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	68115001	rs3742879	A	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	68189609	rs74061508	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr14	68191109	rs11331653	GT	G	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-1.200;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,38:0.78:49
chr14	68191368	rs61991867	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	68192653	rs7156725	G	C	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	68196636	rs718212	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	68234539	rs3742883	T	C	8212.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr14	68236522	rs2295111	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	68241611	rs11158695	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.09;ReadPosRankSum=-1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr14	68241648	rs141953477	CAAA	C,CAAAAA	509.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=25.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,15,5:0.75,0.25:20
chr14	68242898	rs12886915	G	A	143.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr14	68244202	rs767972	C	T	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	68246855	rs2295106	T	A	911.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr14	68246876	rs2295107	C	T	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-0.434;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:49,66:0.57:115
chr14	68248281	rs2235962	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr14	68249499	rs2235967	C	T	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.818;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:211,92:0.30:303
chr14	68252979	rs10525614	C	CAAAAAAAAAAA	975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.23;ReadPosRankSum=0.311;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr14	68257485	rs7143196	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:145,61:0.30:206
chr14	68264867	rs12891164	A	G	4310.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:125,206:0.62:331
chr14	68265484	rs7160083	G	A	128.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.05;ReadPosRankSum=0.157;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr14	68273430	rs181576	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr14	68274020	rs181572	C	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr14	68280848	rs181563	A	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr14	68290372	rs17783124	T	G	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=3.038;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr14	68301767	rs34564590	G	GA	412.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr14	68331437	rs961700	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr14	68331675	rs1474939	A	T	331.77	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.52;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,16:0.94:17
chr14	68934690	rs2074562	A	G	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	68935789	rs2525505	T	C	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	68944321	.	AT	A	1339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.972;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.026;QD=9.71;ReadPosRankSum=2.245;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:46,92:0.67:138
chr14	69012355	rs2525529	C	G	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	69077627	rs17106015	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.08;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr14	69117387	rs8021657	A	G	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.007;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr14	69117512	rs8023214	T	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.070;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr14	69328441	rs393673	A	G	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	69328594	rs412638	G	A	6307.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.28;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	69328613	rs440689	C	T	5992.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	69329116	rs424806	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	69329149	rs1742501	C	T	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	69349528	rs56060157	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=1.249;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:86,30:0.26:116
chr14	69445118	rs1983700	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr14	69445616	.	C	CGGGGCTGGGGGCTG	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-1.840;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:45,8:0.15:53
chr14	69445646	rs4902685	A	G	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	69520518	rs57470426	AT	A	46.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	69521345	rs61741172	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr14	69676541	rs199733370	TA	T	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=0.137;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr14	69695792	rs3742899	G	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:101,47:0.32:148
chr14	69697453	rs1013762	C	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	69704553	rs8007859	G	T	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.384;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:169,76:0.31:245
chr14	69727194	rs114789616	C	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:119,61:0.34:180
chr14	69791213	rs12896878	G	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	69791308	rs2045194	T	A	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	69798284	rs1147461	G	A	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr14	69818891	rs76571673	G	A	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	69921479	rs2232057	A	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	69921674	rs2232058	T	C	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	69988954	rs10146531	T	G	10786.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:2,415:1.00:417
chr14	69992873	rs8004574	A	G	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	69994473	rs1885400	C	G	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr14	70037611	rs7494244	A	T	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	70245877	rs113692047	TA	T	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.180;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:68,31:0.31:99
chr14	70496919	rs59217337	CT	C	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.251;QD=2.09;ReadPosRankSum=-0.712;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:77,47:0.38:124
chr14	70634087	rs2114024	A	G	9256.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr14	70696993	rs71423392	G	C	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr14	70697154	rs41350744	G	A	4440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-13.442;QD=12.62;ReadPosRankSum=2.659;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:135,217:0.62:352
chr14	70712880	rs2296918	A	C	11234.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr14	70713156	rs11629177	G	A	11668.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:208,541:0.72:749
chr14	70713858	rs61979492	T	C	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:254,89:0.26:343
chr14	70713992	rs4902799	C	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr14	70714162	rs4899340	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.88;QD=44.89;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	70714172	rs4899341	T	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.92;QD=43.39;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	70793004	rs4749	A	G	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.677;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr14	70795769	rs56128802	T	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr14	70795772	rs10648369	T	TAC	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr14	70924450	rs58247196	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-4.102;QD=1.60;ReadPosRankSum=-0.395;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr14	70924462	rs3751523	A	G	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:13,54:0.81:67
chr14	70924501	rs8010994	C	G	1315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.201;MLEAC=1;MLEAF=0.500;MQ=54.24;MQRankSum=-1.381;QD=21.93;ReadPosRankSum=1.741;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr14	70924507	rs3751524	A	C	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.633;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=-0.894;QD=22.75;ReadPosRankSum=1.475;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:24,33:0.58:57
chr14	70925257	rs12436346	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.446;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=11.551;MLEAC=1;MLEAF=0.500;MQ=49.27;MQRankSum=-5.304;QD=1.17;ReadPosRankSum=0.513;SOR=2.113;set=HC	GT:AD:AF:DP	0/1:81,13:0.14:94
chr14	70936714	rs2293873	T	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr14	70936840	rs111562158	C	T	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-19.045;QD=5.00;ReadPosRankSum=1.774;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:281,136:0.33:417
chr14	70937121	rs7152848	T	C	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-0.951;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:115,57:0.33:172
chr14	70937413	rs7153448	T	A	2811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=2.636;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-0.803;QD=7.75;ReadPosRankSum=-1.328;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:273,90:0.25:363
chr14	70937420	rs7153459	T	C	2795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.244;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=3.330;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.498;QD=7.66;ReadPosRankSum=-0.949;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:277,88:0.24:365
chr14	70937494	rs8015742	T	G	8354.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr14	70937658	rs114056145	A	G	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:189,70:0.27:259
chr14	70937725	rs10467821	T	C	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-17.499;QD=3.68;ReadPosRankSum=1.872;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:318,116:0.27:434
chr14	70937988	rs28473545	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.31;ReadPosRankSum=-0.114;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr14	71067156	.	G	GA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=2.225;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr14	71109153	rs4902834	C	G	10854.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr14	71197755	rs1476610	T	G	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	71202650	rs4141095	C	T	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	71208996	rs4899368	A	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	71216863	rs10630067	C	CAT	4164.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	71227913	rs3814872	A	C	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	71267345	rs4902857	C	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	71275773	rs3832971	GCCT	G	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.935;QD=1.11;ReadPosRankSum=-0.829;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:110,13:0.11:123
chr14	71275986	rs3742847	C	A	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	71374702	rs2526882	G	A	9058.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.022;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.75;ReadPosRankSum=1.548;SOR=0.253;set=HC	GT:AD:AF:DP	1/1:1,365:1.00:366
chr14	71485692	rs1859914	A	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	71517327	.	G	GT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=6.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.749;SOR=1.494;set=HC	GT:AD:AF:DP	0/1:93,35:0.27:128
chr14	71555821	rs1468469	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr14	72040510	rs80279976	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr14	72040525	rs6574016	G	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.65;ReadPosRankSum=-0.000;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr14	72055468	rs1859643	A	C	4192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=0.547;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:73,190:0.72:263
chr14	72085462	rs146845417	AT	A	1097.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:125,60:0.32:185
chr14	72117156	rs8017465	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	72138484	rs45440200	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr14	72201985	rs2097887	C	A	4098.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:98,196:0.67:294
chr14	72457218	rs1476745	C	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:123,43:0.26:166
chr14	72457682	rs7156200	A	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr14	72932330	.	G	GTGGA	771.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.290;QD=9.08;ReadPosRankSum=1.285;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr14	72939495	rs10131300	C	A	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.361;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:57,32:0.36:89
chr14	72944943	rs2239277	T	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr14	73006865	.	C	CT	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.433;QD=2.61;ReadPosRankSum=-0.890;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:106,42:0.28:148
chr14	73007198	rs113373446	GA	G	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=5.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.379;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:131,54:0.29:185
chr14	73029178	rs2074647	G	A	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=1.868;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:217,67:0.24:284
chr14	73029609	rs17780615	C	T	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:52,11:0.17:63
chr14	73079291	rs10649920	G	GAA	3396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.702;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:244,117:0.32:361
chr14	73138189	rs1060570	C	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=6.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.540;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:137,34:0.20:171
chr14	73181428	rs4903049	T	G	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	73190444	rs35285137	G	GA	837.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=0.038;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:23,51:0.69:74
chr14	73198506	rs6574094	T	C	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr14	73220020	rs3742836	A	G	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr14	73220153	rs3742835	C	T	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	73220188	rs41314521	A	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	73240509	rs12433339	C	T	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=-1.251;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr14	73358945	rs11158986	A	C	6310.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr14	73360819	rs5809598	T	TTGTC	15325.73	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.68;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr14	73360949	rs2215901	A	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	73404680	rs3815500	A	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:161,59:0.27:220
chr14	73404795	rs2302587	G	A	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:16,86:0.84:102
chr14	73406668	rs887936	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:57,28:0.33:85
chr14	73408355	rs3742832	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr14	73408369	rs3832967	A	AT	516.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr14	73409613	rs2333012	G	A	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:36,99:0.73:135
chr14	73409683	rs2240980	C	G	1644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.242;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:342,118:0.26:460
chr14	73412739	rs2246976	C	T	6272.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:135,300:0.69:435
chr14	73413965	rs2243443	G	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr14	73418732	rs3214336	GT	G	231.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	73421262	rs56832550	ACTC	A	1216.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:109,38:0.26:147
chr14	73421284	rs57911111	A	C	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,35:0.34:104
chr14	73422350	rs2806034	T	G	4668.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:116,229:0.66:345
chr14	73425315	rs7144193	C	T	1626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.859;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:302,114:0.27:416
chr14	73460113	rs11159002	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=20.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=1.359;SOR=2.425;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr14	73572606	rs150988201	AAG	A	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-3.922;QD=0.54;ReadPosRankSum=-1.618;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:77,10:0.11:87
chr14	73664853	rs165932	G	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:89,27:0.23:116
chr14	73711394	rs2280792	A	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:120,36:0.23:156
chr14	73711513	rs2280793	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:114,41:0.26:155
chr14	73712303	rs2242609	T	G	1956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.470;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:311,131:0.30:442
chr14	73716633	rs2293793	T	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:109,43:0.28:152
chr14	73718879	rs2242610	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:55,21:0.28:76
chr14	73718926	rs1005014	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr14	73719984	rs2242613	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:107,42:0.28:149
chr14	73720686	rs2293795	G	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.078;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=5.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=0.516;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:66,39:0.37:105
chr14	73727509	rs177389	T	G	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=2.104;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:187,62:0.25:249
chr14	73728957	rs177387	G	A	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.15;ReadPosRankSum=-1.545;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:18,49:0.73:67
chr14	73730290	rs177385	C	A	5797.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:128,275:0.68:403
chr14	73731012	rs151179834	C	T	3573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;ClippingRankSum=0.000;DB;DP=841;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.782;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:599,237:0.28:836
chr14	73732302	rs177383	C	G	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	73733410	rs909216	A	G	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:282,180:0.39:462
chr14	73743205	rs11625196	G	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.979;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr14	73945149	rs10134243	T	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr14	73957682	rs10144461	C	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	73957772	rs10144469	A	G	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr14	73957981	rs150704374	G	GC	6195.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	73958101	rs10147070	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr14	73958375	rs758109	T	C	12792.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr14	73958812	rs3813563	T	C	5634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=1060;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.101;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:701,338:0.33:1039
chr14	73959703	rs10631979	C	CTT	1197.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=3.556;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=7.88;ReadPosRankSum=-0.504;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:55,97:0.64:152
chr14	73961765	rs11365617	CA	C	171.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.63;QD=15.61;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	73961841	rs1019056	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	73963383	rs8014577	T	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	73969610	rs11626122	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:133,61:0.31:194
chr14	73973364	rs35842680	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr14	73974992	.	C	T	901.77	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr14	73989859	rs1074501	C	T	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	74036613	rs61987137	G	T	8212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.348;QD=14.26;ReadPosRankSum=-0.035;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:186,390:0.68:576
chr14	74041748	rs149033118	A	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.73;QD=30.34;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	74058832	rs3742819	C	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:93,32:0.26:125
chr14	74060508	rs35724886	C	A	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.340;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.05;ReadPosRankSum=-1.548;SOR=1.619;set=HC	GT:AD:AF:DP	0/1:25,36:0.59:61
chr14	74060511	.	T	TTCAA	1644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=5.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=-1.416;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:27,39:0.59:66
chr14	74060513	rs375801976	GCTTA	G	1626.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=6.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.69;ReadPosRankSum=-1.581;SOR=1.448;set=HC	GT:AD:AF:DP	0/1:33,42:0.56:75
chr14	74061968	rs2010070	T	C	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr14	74083846	rs12891009	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.634;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:132,36:0.21:168
chr14	74086623	rs67656337	C	CT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.36;ReadPosRankSum=2.166;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr14	74111663	rs76492328	C	T	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:64,132:0.67:196
chr14	74128945	rs45508195	A	G	87.84	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr14	74156316	rs62004949	C	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr14	74162452	rs11625036	G	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-1.715;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr14	74192165	rs10136165	T	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	74192994	rs2336074	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	74193427	rs887508	A	G	8253.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr14	74196686	rs2075025	T	C	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:211,84:0.28:295
chr14	74196792	rs8019058	T	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.325;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:161,52:0.24:213
chr14	74196844	rs6574140	T	C	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	74203690	rs8007548	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr14	74204053	rs62006078	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=1.439;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:103,34:0.25:137
chr14	74206481	rs758774	T	C	10652.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr14	74206855	rs17182544	C	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:16,46:0.74:62
chr14	74388660	rs74487165	T	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr14	74407604	rs79402303	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr14	74444090	.	GA	G	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.370;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr14	74512816	rs141857440	C	A	4691.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:111,229:0.67:340
chr14	74527203	rs8017248	G	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	74533516	.	A	G	3786.77	.	AC=1;AF=0.500;AN=2;DP=277;set=Intersection	GT:AD:AF:DP	0/1:93,183:0.66:276
chr14	74665543	rs10145171	G	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	74711707	.	G	C	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=0.493;QD=16.64;ReadPosRankSum=0.763;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr14	74711711	rs80101978	C	G	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.856;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=0.493;QD=16.64;ReadPosRankSum=1.280;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr14	74711883	rs35435463	C	T	3700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=3.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=2.108;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:72,170:0.70:242
chr14	74726515	rs11383441	G	GC	3509.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	74753278	rs929449	T	C	21429.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,833:1.00:833
chr14	74759006	rs3742801	C	T	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.709;QD=5.26;ReadPosRankSum=-0.588;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:231,114:0.33:345
chr14	74759301	rs4148078	G	T	1528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.833;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:329,110:0.25:439
chr14	74759477	rs4148077	C	T	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:362,134:0.27:496
chr14	74766352	rs2301345	A	G	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.954;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:74,35:0.32:109
chr14	74767128	rs7158118	G	A	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr14	74875955	.	A	AT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.385;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=2.143;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.085;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr14	74970448	rs5809669	G	GC	929.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	74971650	rs36016624	TGACCCTTCGAG	T	5242.73	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:146,244:0.63:390
chr14	74973556	.	A	ATGTG	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=1.408;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:72,14:0.16:86
chr14	74973579	.	TGTGC	T	294.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.396;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:70,19:0.21:89
chr14	74973581	rs201664630	TGC	T	913.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr14	74973583	.	C	CGCGCGCAT	257.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=0.372;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:69,12:0.15:81
chr14	74973740	rs3815329	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr14	74976986	rs7160756	A	G	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	74983491	rs147745131	GT	G	5518.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	74983495	rs63395061	C	G	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	74983841	rs2302114	C	T	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	74989433	rs699371	T	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	74991855	rs862031	A	G	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr14	74994201	rs862029	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=1.393;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr14	75002775	rs4899522	G	A	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	75016482	rs2196861	T	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.290;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	75017650	rs934999	G	C	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	75019157	rs11622992	T	C	8377.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr14	75070493	rs3742793	G	C	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:69,108:0.61:177
chr14	75137664	rs2302832	T	C	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:34,97:0.74:131
chr14	75282873	rs5809679	AT	A	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.740;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:71,30:0.30:101
chr14	75321714	rs61978928	T	C	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	75355767	rs57898381	TA	T	303.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	75356799	rs5809682	T	TA	185.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	75359670	rs2230237	G	A	17116.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.47;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,672:1.00:672
chr14	75361177	rs2070599	C	G	9349.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr14	75366447	rs731952	C	T	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	75367740	rs1799900	G	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	75367807	rs20578	C	T	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.44;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	75373110	rs201391843	GGT	G	177.79	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr14	75373626	rs78810423	C	CTGAT	7154.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	75378296	rs3081755	GTGTGTA	G	3053.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	75378331	rs759057	T	C	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	75386530	rs60425478	T	TGG,TG	1546.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=49;set=Intersection	GT:AF:DP	1/1:0.97:40
chr14	75412908	rs8005277	A	G	7942.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr14	75415194	rs2159907	G	C	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr14	75416000	rs2268614	C	T	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr14	75470446	rs175041	C	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	75485406	rs175052	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	75485489	rs175053	A	G	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	75489632	rs175057	C	T	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	75497130	rs175070	C	A	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	75505016	rs175075	A	G	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	75506549	rs145063005	CATATATATATATATAT	C,CAT	2063.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.21;SOR=2.448;set=HC	GT:AD:AF:DP	1/2:0,17,40:0.30,0.70:57
chr14	75513828	rs175080	G	A	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	75513883	rs175081	T	C	7431.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	75535927	rs175499	G	A	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	75551254	rs175487	C	T	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	75551442	rs175486	A	C	9639.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=-0.812;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:2,375:0.99:377
chr14	75553655	rs175485	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	75572559	rs119077	T	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	75573064	rs34426692	GA	G	189.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=0.000;QD=8.62;ReadPosRankSum=0.674;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr14	75580152	rs175464	G	A	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	75587351	rs175454	T	C	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	75590846	rs175449	A	T	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr14	75601782	rs175444	G	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	75735859	rs4903300	G	A	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr14	75745551	rs2239615	T	A	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	75745626	rs7101	C	T	13793.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr14	75745894	rs4645853	G	A	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.108;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:51,10:0.16:61
chr14	75746690	rs1046117	C	T	24450.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.970;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.32;ReadPosRankSum=0.303;SOR=0.254;set=HC	GT:AD:AF:DP	1/1:1,928:1.00:929
chr14	75746869	rs4645855	G	A	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:144,92:0.39:236
chr14	75747258	rs4645856	T	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.299;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr14	75747407	rs3216792	AG	A	5963.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	75758770	rs3742770	G	A	6435.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr14	75758885	rs3742769	A	G	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:2,315:0.99:317
chr14	75759060	rs3742768	C	T	7649.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr14	75760855	rs3742767	G	C	12686.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,495:1.00:495
chr14	75898847	rs146263493	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr14	75904614	.	TC	CA	2077.77	.	AC=1;AF=0.500;AN=2;DP=77;JOINED;set=Intersection	GT:AD:AF:DP	0/1:22,53:0.71:75
chr14	75904660	rs3625	A	G	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	75935908	rs77100309	G	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:20,81:0.80:101
chr14	75989286	rs175722	G	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	76091197	rs117232115	T	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=0.660;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:14,33:0.70:47
chr14	76097999	rs117958383	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr14	76129287	rs2302592	C	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.011;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr14	76149830	rs1477464	T	C	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:52,123:0.70:175
chr14	76156609	rs2303345	C	T	2163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.445;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:522,169:0.24:691
chr14	76165753	rs186134943	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr14	76173980	rs17849666	G	A	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=1.932;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:132,60:0.31:192
chr14	76175565	rs1981898	C	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-1.291;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr14	76186376	rs2241442	A	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr14	76198818	rs5809726	CT	C	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.941;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:61,33:0.35:94
chr14	76200523	rs17183712	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-2.655;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr14	76201482	rs2288141	G	T	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.012;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:111,33:0.23:144
chr14	76203747	rs967889	A	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	76204090	rs4903345	A	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr14	76224153	rs2113577	T	A	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.218;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:161,58:0.26:219
chr14	76232398	rs2359870	T	C	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	76238003	rs17783198	G	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr14	76238203	rs45480992	G	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:51,116:0.69:167
chr14	76238254	rs57636956	AT	A	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=1.572;QD=5.81;ReadPosRankSum=-0.747;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:17,27:0.61:44
chr14	76242089	rs1035614	A	T	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr14	76287061	rs12206	T	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.649;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.438;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:83,37:0.31:120
chr14	76368544	rs1133834	T	C	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:249,87:0.26:336
chr14	76370358	rs8015239	A	C	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr14	76429868	rs3917200	A	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr14	76432117	rs3917188	GC	G	3763.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:42,115:0.73:157
chr14	76488551	rs2058941	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	76524970	rs59989662	CT	C	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=0.601;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr14	76525515	rs2302856	A	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=0.870;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr14	76525553	rs2302857	A	G	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=-1.129;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,26:0.76:34
chr14	76542856	rs7140892	A	G	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=1.101;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:23,54:0.70:77
chr14	76543004	rs17783366	G	A	5414.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:116,253:0.69:369
chr14	76549377	rs7161722	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.15;ReadPosRankSum=-2.744;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr14	76619167	rs3813547	A	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:25,66:0.73:91
chr14	76638466	rs3783997	A	G	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:23,54:0.70:77
chr14	76644623	rs2121069	G	A	3043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-1.144;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:55,146:0.73:201
chr14	76662370	rs17104243	T	C	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:127,56:0.31:183
chr14	76662376	rs145653552	G	GT	784.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:109,47:0.30:156
chr14	76662446	rs1900127	C	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr14	76720417	rs11846524	C	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr14	76777321	.	T	TTCTC	210.84	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	76948262	rs11480158	C	CT	3390.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=36.86;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	76948862	rs10134248	T	C	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	76957887	rs2361293	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	76964926	rs10139705	C	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:67,26:0.28:93
chr14	77229539	rs2270324	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.603;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr14	77236147	rs7142166	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	77236380	rs3815550	C	T	13902.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr14	77239567	rs2075772	A	G	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.71;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr14	77242101	rs72737517	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	77272992	rs45499197	C	G	5194.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:111,241:0.68:352
chr14	77279064	rs8008004	A	G	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	77292992	rs926120	C	T	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:83,161:0.66:244
chr14	77294950	rs2142189	C	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:136,65:0.32:201
chr14	77295192	rs2067007	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr14	77304292	rs4903497	T	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:98,52:0.35:150
chr14	77311296	rs12896621	A	G	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr14	77319773	.	GGTGTGT	GGTGTGTGTGTGTGTGTGT,G	588.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=80;set=Intersection	GT:AF:DP	0/1:0.53:30
chr14	77332367	rs1882844	C	T	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	77332408	rs7160583	T	C	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=1.598;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:89,50:0.36:139
chr14	77336428	rs11625243	G	A	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	77492891	rs879027	G	A	3847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=943;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.208;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:675,255:0.27:930
chr14	77493647	rs61991619	A	G	1392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.482;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=0.161;QD=11.42;ReadPosRankSum=1.894;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:52,70:0.57:122
chr14	77493761	rs200317113	TTGCTGC	T	3426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=62.21;MQRankSum=0.589;QD=29.29;ReadPosRankSum=0.126;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,89:0.76:117
chr14	77493788	rs28692724	C	T	605.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.500;MQ=62.51;MQRankSum=1.647;QD=4.66;ReadPosRankSum=1.515;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:105,25:0.19:130
chr14	77493791	rs377151545	CTGT	C	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=62.47;MQRankSum=1.502;QD=3.86;ReadPosRankSum=1.696;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:105,23:0.18:128
chr14	77600344	rs7141511	G	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr14	77685357	rs6574361	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	77686303	rs2287377	A	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	77697810	rs11295791	TA	T	159.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=1.329;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr14	77697967	rs375566	A	G	8817.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr14	77703057	rs403291	A	G	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	77704974	rs8010477	G	C	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr14	77707035	rs72679173	C	T	10406.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.51;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr14	77708804	rs61731611	C	T	3966.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:84,183:0.69:267
chr14	77709120	rs2287380	A	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.80;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	77709450	rs409109	T	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:75,23:0.23:98
chr14	77718238	rs61752542	C	T	1303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=2.427;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:280,96:0.26:376
chr14	77732622	rs28909969	CA	C	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=1.906;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:103,37:0.26:140
chr14	77737088	rs4903565	G	A	4295.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:75,200:0.73:275
chr14	77745193	rs3209079	A	C	7808.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr14	77746112	rs11625197	T	C	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:92,197:0.68:289
chr14	77750057	rs2216089	T	G	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-0.815;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr14	77751925	rs2270419	C	T	8147.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr14	77755221	rs2287387	T	G	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:45,99:0.69:144
chr14	77762472	rs2302831	T	C	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:237,79:0.25:316
chr14	77786669	rs11629257	G	T	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:47,91:0.66:138
chr14	77787088	rs2270421	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.06;ReadPosRankSum=2.000;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr14	77790872	rs8016187	T	A	4731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.889;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=2.307;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:82,220:0.73:302
chr14	77793207	rs7975	G	A	6274.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	77794283	rs1046428	T	C	12185.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr14	77795311	rs5809824	CT	C	1597.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	77795439	rs8177567	A	G	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.640;QD=4.54;ReadPosRankSum=0.230;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:315,131:0.29:446
chr14	77795638	rs2270423	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr14	77796398	rs8177571	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.496;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr14	77796641	rs731346	G	A	9650.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr14	77796758	rs8177573	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,51:0.65:78
chr14	77843363	rs10141114	A	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.840;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:105,39:0.27:144
chr14	77843814	rs11844594	T	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,34:0.32:107
chr14	77843971	rs45540040	C	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:205,68:0.25:273
chr14	77844265	rs45527334	G	A	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=7.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.639;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:142,67:0.32:209
chr14	77844592	rs10133824	T	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:83,28:0.25:111
chr14	77844869	rs4903576	A	G	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:274,105:0.28:379
chr14	77845121	rs2193595	A	G	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:103,41:0.28:144
chr14	77872933	.	TACACACACACAC	T	216	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=2;MGOF=51;MMLQ=20;MQ=57.99;NF=2;NR=2;PP=216;QD=54.75;SC=CCTTGTGCCTTACACACACAC;SbPval=0.32;Source=Platypus;TC=7;TCF=2;TCR=5;TR=4;WE=77872958;WS=77872923;set=Platypus	GT:AD:AF:DP	0/1:3,4:0.57:7
chr14	77880305	rs10130481	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr14	77880493	rs8005759	C	T	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=0.201;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:56,88:0.61:144
chr14	77880524	rs10592368	CTT	C	1011.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.844;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.000;QD=18.07;ReadPosRankSum=0.458;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:10,46:0.82:56
chr14	77880593	rs11159258	T	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-0.650;SOR=0.190;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr14	77900165	rs34835605	C	T	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=1.264;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:90,48:0.35:138
chr14	77901758	rs35499137	G	GAA	439.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-1.203;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:15,37:0.71:52
chr14	77914674	rs10483882	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.861;QD=5.41;ReadPosRankSum=0.269;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr14	77914752	rs2091916	A	G	2328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.20;ReadPosRankSum=-0.212;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:54,110:0.67:164
chr14	77916205	rs760252	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr14	77919587	rs2364158	T	C	10258.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr14	77923783	rs11845345	C	T	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=2.225;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:147,50:0.25:197
chr14	77926011	rs1061629	C	T	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:42,106:0.72:148
chr14	77928476	rs12436593	C	T	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:63,111:0.64:174
chr14	77928525	rs1061638	A	G	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:70,137:0.66:207
chr14	77928735	rs11159262	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	77930752	rs11624314	G	A	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	77930855	rs34099277	A	T	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.287;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:113,40:0.26:153
chr14	77932017	rs7146595	A	C	2334.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:38,108:0.74:146
chr14	77932111	rs7146784	A	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr14	77934587	rs3825694	T	C	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:63,44:0.41:107
chr14	77934758	rs4903584	A	G	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr14	77934905	.	A	ATT	425.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.711;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:14,33:0.70:47
chr14	77935239	rs5809831	T	TG	540.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr14	77935520	rs7250	G	A	6542.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:112,306:0.73:418
chr14	77951124	rs3742728	C	T	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	77964500	rs11851856	C	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-2.227;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:115,45:0.28:160
chr14	77984540	rs140089337	A	C	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-1.127;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:45,85:0.65:130
chr14	77984573	rs926114	C	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	77987958	rs2072672	C	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr14	78018614	rs2178876	C	T	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	78023519	rs2272587	C	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:80,37:0.32:117
chr14	78028803	rs2364602	A	G	4852.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	78036899	rs11344772	AG	A	3163.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	78036935	rs4903606	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	78141858	rs3783981	A	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	78170896	rs8021036	C	G	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.30;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	78174473	rs11159286	A	C	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	78183706	rs176959	C	T	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr14	78184566	rs176960	C	A	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.740;QD=2.57;ReadPosRankSum=-1.617;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:165,44:0.21:209
chr14	78197365	rs114763	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.529;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:88,16:0.15:104
chr14	78199019	rs12587825	T	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:72,19:0.21:91
chr14	78200392	rs10134425	G	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-1.016;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr14	78226850	rs1477264	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr14	78285461	rs3214433	GT	G	180.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:63,18:0.22:81
chr14	78325698	rs7149884	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.165;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr14	78353259	.	AC	A	412.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.520;QD=9.17;ReadPosRankSum=1.322;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr14	78353261	.	ACACACACACAC	A	394.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.333;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=3.258;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-1.665;QD=7.74;ReadPosRankSum=1.113;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr14	78353368	rs17826188	T	C	1428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-1.249;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:175,87:0.33:262
chr14	78365612	rs2287650	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:74,33:0.31:107
chr14	78366933	rs3837641	G	GAAC	3512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.818;QD=7.38;ReadPosRankSum=1.699;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:365,111:0.23:476
chr14	78366967	rs734654	A	G	2098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-2.951;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:514,158:0.24:672
chr14	78390880	rs2302944	T	C	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:82,150:0.65:232
chr14	78709814	rs1882821	T	C	6105.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:76,282:0.79:358
chr14	78710190	rs1882822	G	A	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:74,171:0.70:245
chr14	78744823	rs10134857	G	A	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	78748366	rs10147289	C	T	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	78766814	rs4903742	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	79181046	rs1465481	A	T	7867.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	79276733	rs4133797	C	A	465.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=1.268;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:4,27:0.87:31
chr14	79433527	.	G	GT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=8.670;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.768;QD=1.26;ReadPosRankSum=0.535;SOR=2.005;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr14	80669461	.	G	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.841;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:229,42:0.15:271
chr14	80669639	rs5809986	T	TA	457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=3.197;QD=4.53;ReadPosRankSum=2.420;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:56,45:0.45:101
chr14	80672711	rs56033314	A	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr14	80971377	rs188512111	G	A	1157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.177;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:167,71:0.30:238
chr14	80993330	rs34838656	G	GA	337.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.514;QD=15.35;ReadPosRankSum=1.537;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr14	80993774	rs11159467	A	T	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.72;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	80993775	.	A	T	142	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=16;HapScore=4;MGOF=45;MMLQ=23;MQ=51.17;NF=0;NR=2;PP=142;QD=88.3856062736;SC=GCTCTGTCTAAAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=2;WE=80993783;WS=80993763;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr14	81025522	rs1530771	C	A	1472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=0.004;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:29,70:0.71:99
chr14	81046810	rs71456210	A	AACGAGTT	1147.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr14	81251406	rs144670267	T	G	1928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.500;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:338,129:0.28:467
chr14	81296718	rs66748940	C	T	219.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	81297385	rs7156572	G	A	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	81574687	rs3837640	T	TTCTC	1259.74	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:2,31:0.94:33
chr14	81574845	.	T	TTTTTTTCTTTTTAC	3205.73	.	AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.90;QD=43.91;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	81574959	rs3783942	A	G	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.68;QD=26.29;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	81575005	rs3783941	C	A	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	81610583	rs1991517	G	C	9407.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr14	81667852	rs8019633	A	T	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	81676360	rs201118427	C	CT	898.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.80;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	81676361	.	A	AC	899.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.84;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	81676362	rs199721074	G	T	908.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.27;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	81676370	rs368782223	CTTTATCATACA	C	893.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	81676382	rs372189020	GAATGGTCCCACAAGAAATAT	G	893.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.56;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	81686922	.	C	CA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.517;QD=0.76;ReadPosRankSum=0.820;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr14	81686938	rs145594822	A	AT	2731.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	81728288	.	TA	T	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=3.295;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=3.227;QD=2.85;ReadPosRankSum=1.465;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:39,29:0.43:68
chr14	81737076	rs2241621	A	C	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	81744736	rs3813535	A	G	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	85995608	rs12590399	T	G	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.27;ReadPosRankSum=-0.933;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:11,32:0.74:43
chr14	85995614	rs12587861	G	A	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.12;ReadPosRankSum=-0.509;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr14	86088056	rs10141266	T	C	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr14	88400353	rs412915	C	T	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-0.366;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:28,61:0.69:89
chr14	88400449	rs413750	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.18;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	88400449	.	TG	CA,CG	102	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.41;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=8;MMLQ=27;MQ=60.0;NF=1,1;NR=4,10;PP=20,102;QD=14.6935749724;SC=TATCTATTACTGCAGAAATAG;SbPval=0.38;Source=Platypus;TC=11;TCF=1;TCR=10;TR=5,11;WE=88400458;WS=88400439;set=Platypus	GT:AF:DP	0/1:0.45:11
chr14	88400450	rs432946	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.007;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.12;ReadPosRankSum=-0.289;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr14	88401213	rs421262	T	C	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	88406120	rs45626938	C	T	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=2.584;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr14	88406127	rs45567441	G	C	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=1.231;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:42,27:0.39:69
chr14	88406404	rs417276	T	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	88407734	rs448805	G	C	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=33.35;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	88407875	rs421466	T	A	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr14	88407888	rs398607	A	G	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:47,133:0.74:180
chr14	88407917	rs12432149	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:79,35:0.31:114
chr14	88411803	rs444902	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	88411837	rs366615	G	A	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.93;ReadPosRankSum=-0.948;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:8,52:0.87:60
chr14	88411947	rs367327	T	C	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	88414211	rs398076	G	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.326;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:19,49:0.72:68
chr14	88414283	rs398343	G	A	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	88416390	rs440426	A	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	88416441	rs451073	C	T	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	88417095	rs11300320	GA	G	710.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.33;ReadPosRankSum=-0.515;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr14	88417161	rs431748	C	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	88417244	rs443019	C	T	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	88429690	rs17687109	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:88,19:0.18:107
chr14	88434893	rs17687364	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:56,20:0.26:76
chr14	88442582	rs76114917	G	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr14	88442646	rs76521220	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:174,54:0.24:228
chr14	88442712	rs34362748	C	T	1489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.573;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:357,117:0.25:474
chr14	88448643	rs79515863	C	T	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.535;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:66,26:0.28:92
chr14	88448695	rs17797993	C	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:33,10:0.23:43
chr14	88450639	rs17798011	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.63;ReadPosRankSum=0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr14	88450928	rs77468347	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:49,15:0.23:64
chr14	88452981	rs77466023	C	T	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.030;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:87,37:0.30:124
chr14	88453424	rs2119703	G	A	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.340;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr14	88454469	rs74337989	A	T	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=2.068;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:149,59:0.28:208
chr14	88454910	rs2289511	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-2.818;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr14	88458573	rs78557856	A	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr14	88458745	rs78187751	C	T	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-1.053;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr14	88459434	rs111976362	G	T	2474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.645;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:153,70:0.31:223
chr14	88459448	rs111887056	C	G	2822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.010;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:186,81:0.30:267
chr14	88459467	rs112992946	C	G	2648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-0.879;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:210,87:0.29:297
chr14	88459656	rs76999174	A	G	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:89,69:0.44:158
chr14	88477413	rs6574978	C	T	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=1.460;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:302,93:0.24:395
chr14	88651826	rs144490234	A	AAC	4117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.669;QD=16.67;ReadPosRankSum=-0.910;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:58,189:0.77:247
chr14	88651962	rs17762463	C	T	8305.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=26.04;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr14	88658764	rs12898054	G	C	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	88701337	rs61976990	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr14	88729931	.	G	T	36	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=1;NR=5;PP=36;QD=11.7952020912;SC=GAAGAAGAGAGTTTGTTTATA;SbPval=0.83;Source=Platypus;TC=23;TCF=6;TCR=17;TR=6;WE=88729939;WS=88729921;set=Platypus	GT:AD:AF:DP	0/1:17,6:0.26:23
chr14	88737193	rs1298237	T	C	7740.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:1,303:1.00:304
chr14	88792816	rs3742690	T	G	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	88852031	rs709886	A	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	88852279	rs5810413	TG	T	1636.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	88862529	rs3179969	G	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	88894210	rs2295135	T	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	88895669	rs386579	T	G	1873.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.862;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=-0.733;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:1,72:0.99:73
chr14	88895941	rs61975260	C	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	88935925	rs2297129	A	G	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr14	88936254	rs2297128	A	G	10269.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr14	88938652	rs2274736	A	G	7892.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr14	88945591	rs879932	A	G	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	88946622	rs2401751	G	A	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr14	88970925	rs1998670	C	T	9121.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr14	88971025	rs200710161	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.726;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr14	88971758	rs2274735	T	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.39;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	88974131	rs34965888	GAT	G	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	88974417	rs10143744	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	88983670	rs10150986	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	89037482	rs10682918	C	CAT	1275.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	89042180	rs1469602	T	G	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	89063167	rs2297124	A	G	13242.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,526:1.00:526
chr14	89082396	rs61173654	A	AT	1214.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	89087278	rs201884924	TA	T	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.463;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:83,50:0.38:133
chr14	89088266	rs4635267	C	T	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	89088357	rs56144430	G	A	23067.77	.	AC=2;AF=1.00;AN=2;DB;DP=922;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.13;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,918:1.00:918
chr14	89088388	rs2983488	G	C	20363.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=25.17;ReadPosRankSum=1.705;SOR=0.335;set=HC	GT:AD:AF:DP	1/1:1,808:1.00:809
chr14	89089149	rs11382327	C	CT	395.84	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr14	89094243	rs1144916	G	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	89105287	rs1152383	T	A	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	89148486	rs17260380	C	T	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	89205265	rs17188228	T	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	89258877	rs61982739	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.571;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr14	89307320	rs17700296	T	C	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.295;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:219,70:0.24:289
chr14	89591829	rs17777553	G	T	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr14	89647259	rs140257053	G	GGCAGAGAACATGCATGGA	2708.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=45.91;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	89647297	rs34338248	T	TAC	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	89747162	rs11845021	A	G	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=1.257;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:12,39:0.76:51
chr14	89747473	rs7147341	T	C	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	89867978	rs12147030	T	C	15375.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,601:1.00:601
chr14	89878232	.	T	TA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=5.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.273;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr14	89884022	rs7422	A	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.838;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:110,32:0.23:142
chr14	90095445	rs100016	T	C	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:56,157:0.74:213
chr14	90097939	rs139214677	GC	G	163.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:45,8:0.15:53
chr14	90097941	rs201292636	T	A	172.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:43,8:0.16:51
chr14	90263500	rs9026	T	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-0.585;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr14	90263525	rs1555616	C	A	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.87;SOR=1.247;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	90303065	rs8021113	T	C	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.160;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:25,37:0.60:62
chr14	90303113	rs8019848	A	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr14	90303353	rs75150035	G	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.811;QD=5.86;ReadPosRankSum=1.207;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr14	90303383	rs8020323	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr14	90303435	rs12437204	T	A	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.35;ReadPosRankSum=1.164;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:22,35:0.61:57
chr14	90303445	rs12437206	T	C	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.90;ReadPosRankSum=0.468;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:21,39:0.65:60
chr14	90390948	rs12100727	A	G	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:88,43:0.33:131
chr14	90390968	rs12101251	T	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:108,47:0.30:155
chr14	90391072	rs11159940	T	G	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr14	90398907	rs8778	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.199;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr14	90399058	rs3752966	T	C	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	90416517	rs77780222	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=1.923;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr14	90416607	rs45463491	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=1.803;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	90420298	rs3736860	C	T	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-0.635;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:324,106:0.25:430
chr14	90429749	rs3825663	A	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:105,39:0.27:144
chr14	90451303	rs1296406	A	G	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	90455460	rs35972056	G	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=0.931;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	90456188	rs2401863	G	T	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-1.597;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr14	90458397	rs35621567	GT	G	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.915;QD=2.61;ReadPosRankSum=-0.079;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:46,22:0.32:68
chr14	90489298	rs11851131	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-1.461;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr14	90489419	rs146508707	CTGG	C	1563.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:110,46:0.29:156
chr14	90509564	rs9488	C	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:115,48:0.29:163
chr14	90651033	rs3814848	G	A	4352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.648;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.359;QD=14.61;ReadPosRankSum=-0.516;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:104,194:0.65:298
chr14	90722824	rs2277516	G	C	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-1.270;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr14	90723000	rs2277515	A	G	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:69,99:0.59:168
chr14	90723059	rs2277514	T	C	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=1.039;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr14	90723109	rs6575119	T	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	90723152	rs3825662	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.58;ReadPosRankSum=-1.732;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	90726676	rs11844225	G	A	2573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.931;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:56,122:0.69:178
chr14	90729931	rs8022531	T	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr14	90729984	rs8015510	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr14	90730071	rs4811	C	T	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=10.726;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=-1.361;QD=21.84;ReadPosRankSum=2.022;SOR=4.143;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr14	90730265	rs2282030	G	A	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr14	90731687	rs34260220	GA	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.881;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr14	90734826	rs11624246	A	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=1.849;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr14	90740324	rs34512486	ATCT	A	4661.73	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:302,134:0.31:436
chr14	90740588	rs10140761	G	C	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-0.050;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:147,57:0.28:204
chr14	90744672	rs10184	G	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:170,86:0.34:256
chr14	90745422	rs3737035	T	C	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.125;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:139,60:0.30:199
chr14	90752908	rs7160304	G	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr14	90754538	rs17799226	C	T	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr14	90756503	rs3742672	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.625;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr14	90767607	rs3825661	C	T	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.805;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:188,74:0.28:262
chr14	90767746	rs3742669	C	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:106,37:0.26:143
chr14	90767759	rs3742668	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:86,30:0.26:116
chr14	90767856	rs3742667	T	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=1.860;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr14	90769539	rs2149647	C	T	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-1.506;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:135,49:0.27:184
chr14	90770210	rs4904670	C	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	90778648	.	G	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.21;ReadPosRankSum=-0.591;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr14	90863489	rs12886342	G	A	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	90865283	rs2300497	T	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	90865462	rs2300498	C	G	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	90866346	rs2268433	C	T	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	91007618	rs1294572	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	91077278	rs3215800	AC	A	1077.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr14	91110582	rs3830889	TACATAC	T	1021.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	91113471	rs2277512	G	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	91113537	rs1286422	A	G	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	91123575	rs3742660	T	C	12334.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr14	91165572	rs1749699	G	A	11316.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr14	91165606	rs1742100	G	A	5737.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.922;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=1.156;SOR=0.671;set=HC	GT:AD:AF:DP	1/1:3,220:0.99:223
chr14	91282452	rs2401918	T	G	1868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.94;ReadPosRankSum=0.105;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr14	91282470	rs943700	G	A	2545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.48;ReadPosRankSum=0.769;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:24,80:0.77:104
chr14	91360733	rs77438853	G	GT	1524.73	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:216,65:0.23:281
chr14	91365646	rs61587732	GAA	G,GAAA	1389.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.381;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.280;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=-0.044;SOR=0.470;set=HC	GT:AD:AF:DP	1/2:13,37,37:0.43,0.43:87
chr14	91365649	rs117599685	A	G	652.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=7.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=2.560;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:74,27:0.27:101
chr14	91389702	rs1957386	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr14	91409615	rs111743702	A	AT	173.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-0.284;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr14	91467567	rs1286147	A	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:103,46:0.31:149
chr14	91518809	rs147133961	TA	T	187.74	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr14	91592748	rs57615276	C	CTTCTT	1755.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr14	91636395	rs4900071	C	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	91636532	rs4900072	C	T	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr14	91639611	.	A	AT	571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DP=385;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.432;QD=1.56;ReadPosRankSum=-0.827;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:282,85:0.23:367
chr14	91681623	rs11622036	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	91681921	rs45465092	G	A	13786.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,537:1.00:537
chr14	91690287	rs75775892	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr14	91710562	rs71656519	GAC	G	210.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.06;ReadPosRankSum=-2.287;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr14	91739081	rs941920	A	G	4011.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.76;ReadPosRankSum=-1.119;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,160:0.99:162
chr14	91751788	rs11341843	TC	T	13171.73	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr14	91763637	rs3742656	C	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	91773568	rs1970912	T	C	5299.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr14	91776434	rs2277507	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	91883267	rs1285844	A	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.490;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr14	91883499	rs1742546	G	A	1902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.045;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:134,106:0.44:240
chr14	91884116	rs3742653	C	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:57,21:0.27:78
chr14	91942342	rs10145724	T	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.731;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr14	91948043	rs17127374	T	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr14	91957236	rs10131200	T	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.25;ReadPosRankSum=-1.718;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr14	92041075	rs1704614	C	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr14	92053395	rs2295789	G	C	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.382;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:107,33:0.24:140
chr14	92058445	rs1285637	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-0.656;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr14	92084004	rs1620238	C	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.251;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.997;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:91,21:0.19:112
chr14	92088016	rs1296082	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:80,36:0.31:116
chr14	92102932	rs4900084	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:72,25:0.26:97
chr14	92105643	rs1704630	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr14	92126458	.	T	TCA	173.73	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr14	92126460	rs1704673	T	A	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr14	92136126	rs3742652	C	G	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.294;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=1.519;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:166,74:0.31:240
chr14	92150089	rs10139470	G	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	92174343	rs4605095	C	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr14	92185731	rs17783516	G	A	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr14	92189366	rs17127513	T	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr14	92189548	.	GA	G	213.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.761;QD=11.87;ReadPosRankSum=-0.119;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr14	92191350	rs3814837	C	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr14	92264080	rs71120197	TA	T	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.654;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr14	92268531	rs10498631	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr14	92268615	rs2402073	T	G	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	92280037	rs10134181	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:89,31:0.26:120
chr14	92336775	rs929608	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.64;ReadPosRankSum=-0.241;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr14	92343764	rs2430341	C	T	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	92344244	rs2430342	T	C	5372.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:102,258:0.72:360
chr14	92344300	rs2498847	A	G	3293.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:61,149:0.71:210
chr14	92347680	rs2430347	A	G	7156.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr14	92403660	rs2474028	T	C	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	92420861	rs2430336	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.98;ReadPosRankSum=-0.447;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr14	92441066	rs1051340	C	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.286;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr14	92460098	rs2273185	C	A	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=-1.017;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:15,34:0.69:49
chr14	92473943	rs3818095	T	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr14	92477168	rs2277526	A	G	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:27,70:0.72:97
chr14	92491853	rs2295171	T	C	569.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr14	92537105	rs7158238	C	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr14	92537163	rs3092822	T	G	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,60:0.72:83
chr14	92537223	rs7158733	G	T	3852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.201;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=2.719;QD=15.92;ReadPosRankSum=1.557;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:64,178:0.74:242
chr14	92537353	.	C	CG	7389.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=63.55;MQRankSum=6.778;QD=29.32;ReadPosRankSum=0.965;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:64,188:0.75:252
chr14	92537354	.	C	CTGCTGCTGCTGCTGCTGCTG	6776.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.749;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.13;MQRankSum=2.946;QD=27.22;ReadPosRankSum=2.285;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:58,191:0.77:249
chr14	92546144	rs2003721	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr14	92547145	rs761551	G	T	414.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=0.819;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr14	92547176	rs761552	G	A	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=1.371;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr14	92547425	rs761553	C	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.27;ReadPosRankSum=1.229;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr14	92548785	rs1048755	C	T	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:100,180:0.64:280
chr14	92548896	rs10146519	A	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr14	92549586	rs16999141	G	A	2999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=-0.156;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:53,140:0.73:193
chr14	92549632	rs12590497	C	A	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr14	92555199	rs8003041	T	C	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,44:0.85:52
chr14	92559411	rs11340209	AT	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.22;ReadPosRankSum=0.272;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr14	92559678	rs4904834	G	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.82;ReadPosRankSum=-0.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	92560008	rs1997920	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr14	92560288	.	GTT	G	129	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.25;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	92560311	rs2402108	A	G	185.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	92562277	rs17847278	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr14	92562568	rs12147767	T	C	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:25,63:0.72:88
chr14	92563254	rs35079962	A	AT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-0.303;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr14	92582472	rs13350	G	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	92582675	.	C	CTTT	56.73	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	92584021	rs36078150	C	CTTTT	798.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=0.000;QD=21.02;ReadPosRankSum=1.518;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:3,35:0.92:38
chr14	92584064	rs12882784	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	92585205	rs7152991	T	C	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	92585304	rs34114160	C	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.408;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr14	92585332	rs10649809	G	GAA	1432.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=27.03;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	92588002	rs3818263	T	G	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	92588155	rs10603293	ATTTT	A	6622.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=40.88;SOR=1.431;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	92588192	rs12886909	T	C	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-1.057;QD=10.20;ReadPosRankSum=-1.307;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:43,50:0.54:93
chr14	92588219	rs7148709	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	92597228	rs3759722	C	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr14	92609334	rs35609412	T	C	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:28,98:0.78:126
chr14	92622679	rs45600140	T	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	92627409	rs76483830	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-1.764;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr14	92627668	rs2025071	T	A	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	92792255	rs941646	G	A	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	92792432	rs941645	T	C	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	92905817	rs4900122	A	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	92909073	rs941650	T	C	7284.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr14	92909979	rs72631612	C	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr14	92911593	rs6575255	C	A	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:91,165:0.64:256
chr14	92915625	rs36228701	TACACACACAC	T	387.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=55.39;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	92920371	rs7144273	C	T	2934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-2.201;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:75,142:0.65:217
chr14	92922713	rs7158400	T	C	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:32,66:0.67:98
chr14	92950048	rs35769213	CCTT	C	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.186;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.898;QD=6.32;ReadPosRankSum=-0.763;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:52,15:0.22:67
chr14	92958612	rs7150406	G	A	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.584;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:139,61:0.30:200
chr14	92959216	rs11623883	G	A	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.01;ReadPosRankSum=-1.229;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:18,58:0.76:76
chr14	92959347	.	CACACACACACACACAG	C	458.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.77;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	92960025	rs4904942	T	C	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr14	92981606	rs55930890	C	G	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.186;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:182,60:0.25:242
chr14	93118038	rs3829947	A	G	6463.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:146,305:0.68:451
chr14	93118198	rs3814830	C	T	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-2.922;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:336,104:0.24:440
chr14	93118229	rs117068593	C	T	4409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=-0.532;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:46,197:0.81:243
chr14	93118668	rs3742717	C	T	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:434,185:0.30:619
chr14	93154537	rs71698059	TGGC	T	3168.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.871;QD=9.08;ReadPosRankSum=-0.246;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:254,95:0.27:349
chr14	93154540	rs71461983	C	T	5248.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=433;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:123,253:0.67:376
chr14	93170741	rs2250672	T	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:173,68:0.28:241
chr14	93170901	rs2402189	A	C	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	93173010	rs17128502	C	T	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-2.490;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:137,58:0.30:195
chr14	93176042	rs148659834	G	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.167;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr14	93178191	rs1951708	A	G	24618.77	.	AC=2;AF=1.00;AN=2;DB;DP=942;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.16;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,941:1.00:941
chr14	93185297	rs78143291	C	CCT	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr14	93198972	rs12885208	A	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr14	93199080	rs2236264	C	T	5656.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:164,275:0.63:439
chr14	93199203	rs1613441	T	A	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	93276654	rs1040835	T	C	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	93276806	rs1040833	C	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	93282872	rs142530146	T	TCTTCG	294.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	93285962	rs12880298	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr14	93286207	rs142097537	TGA	T	950.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:115,32:0.22:147
chr14	93286230	rs17128596	A	G	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.951;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:91,26:0.22:117
chr14	93286291	rs10716250	AC	A	743.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr14	93290723	rs3818256	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	93290856	rs2273646	T	C	7473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.22;ReadPosRankSum=1.323;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:98,187:0.66:285
chr14	93290859	rs2273645	C	T	7430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=1.635;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:97,185:0.66:282
chr14	93303604	rs4904994	C	T	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:12,61:0.84:73
chr14	93303848	.	T	TTTG	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.142;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr14	93303850	rs113573267	T	TG	1466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.16;ReadPosRankSum=0.522;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr14	93303854	rs74598769	T	C	1475.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.795;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.33;ReadPosRankSum=0.085;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr14	93303855	rs34061602	G	T	1475.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.33;ReadPosRankSum=0.085;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr14	93389403	rs7159323	A	C	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	93392834	rs7146118	C	A	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:26,83:0.76:109
chr14	93399101	rs729940	C	T	4626.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:67,211:0.76:278
chr14	93401178	rs941581	A	G	4439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=0.137;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:84,210:0.71:294
chr14	93401316	rs7610	T	C	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr14	93404674	rs6575304	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr14	93404737	rs8006516	C	T	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:36,67:0.65:103
chr14	93406954	rs45585434	C	T	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr14	93407062	rs1043542	A	G	4574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=-0.250;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:78,218:0.74:296
chr14	93407248	rs11446	A	G	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:39,52:0.57:91
chr14	93407301	rs13316	C	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr14	93412609	rs1998054	A	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr14	93429060	rs2295392	G	A	2713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=1.134;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:47,127:0.73:174
chr14	93532678	.	T	G	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.622;QD=17.08;ReadPosRankSum=1.601;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:37,101:0.73:138
chr14	93532680	.	T	G	3551.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.604;QD=24.67;ReadPosRankSum=1.361;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:37,107:0.74:144
chr14	93532681	rs200126261	GTGTGTA	G	3542.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.596;QD=24.77;ReadPosRankSum=1.084;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:36,107:0.75:143
chr14	93693422	rs2905	C	T	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:99,156:0.61:255
chr14	93708759	rs36099812	A	C	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:192,86:0.31:278
chr14	93712644	.	TAAA	T	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.900;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.632;QD=9.23;ReadPosRankSum=0.914;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr14	93720181	rs8012209	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.673;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr14	93733303	rs7153772	T	C	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:157,64:0.29:221
chr14	93799284	rs146686071	ACCG	A	3550.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	93813766	rs11629131	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr14	93953904	rs61992611	G	A	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=0.065;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr14	93953907	rs33942732	A	AT	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.17;ReadPosRankSum=0.000;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr14	93994870	rs17094893	A	G	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:25,66:0.73:91
chr14	93994954	rs28420706	G	A	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:22,81:0.79:103
chr14	93998806	rs942068	C	A	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr14	93999048	rs117684630	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr14	94007075	rs1951716	C	T	1641.56	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:10,75:0.88:85
chr14	94008753	rs12893237	A	G	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=-2.030;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:13,60:0.82:73
chr14	94088587	rs4905081	G	A	4807.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:110,220:0.67:330
chr14	94097287	rs2148563	G	A	8090.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr14	94103602	rs4905082	G	A	5744.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:96,264:0.73:360
chr14	94109829	rs943318	G	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-1.665;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr14	94120282	rs7160955	C	A	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-2.245;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:299,98:0.25:397
chr14	94121770	rs11626422	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:112,47:0.30:159
chr14	94129223	.	AACAC	A	90	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=27;MQ=60.0;NF=1;NR=2;PP=90;QD=31.0;SC=AAACACTTTAAACACACACAC;SbPval=0.48;Source=Platypus;TC=5;TCF=1;TCR=4;TR=3;WE=94129234;WS=94129213;set=Platypus	GT:AD:AF:DP	1/0:2,3:0.60:5
chr14	94152768	rs2296686	C	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr14	94152959	rs76973270	C	T	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:157,69:0.31:226
chr14	94160521	rs943323	C	A	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	94160611	rs960888	G	A	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:74,121:0.62:195
chr14	94187832	rs1887197	C	T	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:54,101:0.65:155
chr14	94192137	rs10873436	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	94245452	rs34914817	A	G	256.56	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr14	94245649	rs4905087	A	G	24472.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,542:1.00:542
chr14	94245652	rs4900195	C	T	24603.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,557:1.00:557
chr14	94391699	rs10141024	G	A	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:55,152:0.73:207
chr14	94400431	rs11625548	T	C	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr14	94405871	rs10873442	G	C	5207.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:142,248:0.64:390
chr14	94406096	rs7155320	A	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr14	94410447	rs10134105	T	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr14	94417421	rs7147919	G	A	6061.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:152,277:0.65:429
chr14	94417541	rs4277287	A	G	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:47,91:0.66:138
chr14	94417586	rs4483793	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,44:0.65:68
chr14	94464432	rs733166	A	G	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:278,111:0.29:389
chr14	94464489	rs10142728	G	A	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-2.346;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:260,77:0.23:337
chr14	94466081	rs4905137	C	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.314;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr14	94467549	rs60333700	C	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:246,88:0.26:334
chr14	94505283	rs2295216	C	G	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-0.961;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:192,97:0.34:289
chr14	94510275	rs79811936	C	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:128,60:0.32:188
chr14	94510964	rs2273226	T	C	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.841;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:217,109:0.33:326
chr14	94512415	rs8021300	T	C	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr14	94519199	rs3790045	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.501;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr14	94524216	rs1056810	T	C	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-2.843;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:66,36:0.35:102
chr14	94527525	rs11846519	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.491;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr14	94554550	rs998518	T	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.144;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:47,31:0.40:78
chr14	94563193	rs7157940	T	C	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:120,59:0.33:179
chr14	94564035	rs2896258	A	G	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-1.513;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:114,48:0.30:162
chr14	94566967	rs3818118	G	T	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr14	94567032	rs3818119	C	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=2.289;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:105,49:0.32:154
chr14	94568776	rs2295217	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-2.168;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:72,24:0.25:96
chr14	94578162	rs2239644	G	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr14	94578188	rs1243080	C	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr14	94594768	rs958187	T	G	5595.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	94595989	rs2273514	T	C	5917.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr14	94700138	rs4905172	C	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	94722764	rs6575403	C	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.79;ReadPosRankSum=0.524;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr14	94732107	rs3827899	T	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:31,75:0.71:106
chr14	94745083	rs5810667	G	GT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-2.085;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:94,23:0.20:117
chr14	94756794	rs941590	T	C	5654.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:124,267:0.68:391
chr14	94756943	rs45505795	G	C	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.592;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:101,39:0.28:140
chr14	94772504	rs1042394	G	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.239;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:170,32:0.16:202
chr14	94776219	rs2228542	C	T	1767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.966;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:371,128:0.26:499
chr14	94776221	rs2228541	A	C	7950.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:127,366:0.74:493
chr14	94776387	rs2281520	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.370;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr14	94776401	rs11160168	T	C	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	94776441	rs11160169	C	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr14	94831028	rs34362280	G	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.72;ReadPosRankSum=-0.000;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr14	94832647	rs149961411	AG	A	3448.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:61,112:0.65:173
chr14	94832796	rs4592582	G	A	4891.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:133,232:0.64:365
chr14	94833033	rs1956172	T	C	8205.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr14	94844843	rs1303	T	G	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=-1.280;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:53,98:0.65:151
chr14	94844947	rs28929474	C	T	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-2.773;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:110,65:0.37:175
chr14	94847415	rs6647	A	G	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.647;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:102,38:0.27:140
chr14	94909630	rs3818257	C	T	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	94912799	rs12888805	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:98,50:0.34:148
chr14	94912896	rs1885137	T	G	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.901;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:115,36:0.24:151
chr14	94914455	rs10129672	A	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	94929367	rs2295652	G	T	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=0.721;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:9,33:0.79:42
chr14	94929541	rs2224418	G	A	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	94929660	rs11624364	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr14	94930956	rs12891900	T	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr14	94930980	rs11628686	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr14	94930984	rs13379439	G	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr14	94931016	rs8020984	T	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	94931105	rs11628722	A	G	5756.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.03;ReadPosRankSum=2.362;SOR=0.237;set=HC	GT:AD:AF:DP	1/1:1,229:1.00:230
chr14	94933473	rs28618118	C	A	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=3.953;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:19,63:0.77:82
chr14	94933640	rs28583900	A	T	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:35,125:0.78:160
chr14	94933695	rs17090921	G	A	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:32,85:0.73:117
chr14	94933709	rs6575433	C	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.260;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr14	94935804	.	C	T	4290.77	.	AC=1;AF=0.500;AN=2;DP=290;set=Intersection	GT:AD:AF:DP	0/1:83,197:0.70:280
chr14	94936222	rs55683719	G	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr14	95033275	rs1005348	T	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr14	95033356	rs5510	C	T	3864.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:51,181:0.78:232
chr14	95033595	rs5511	A	T	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:14,54:0.79:68
chr14	95033671	rs3827893	A	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.48;ReadPosRankSum=1.250;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr14	95033681	rs10133253	A	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.44;ReadPosRankSum=1.612;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr14	95033708	rs17091071	A	C	52.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	95034342	rs2070777	T	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr14	95053849	rs6113	T	C	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=1.409;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:455,138:0.23:593
chr14	95053863	rs6118	C	T	1694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=1.075;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:436,127:0.23:563
chr14	95053890	rs6115	G	A	14095.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.84;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chr14	95053891	rs6111	C	T	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-1.077;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:355,104:0.23:459
chr14	95054012	rs6119	A	G	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.163;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:288,90:0.24:378
chr14	95054176	rs6112	T	C	17760.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,685:1.00:685
chr14	95056264	rs2069984	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.377;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr14	95056471	rs141881639	G	A	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:235,110:0.32:345
chr14	95057270	rs6107	G	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	95057294	rs2069987	T	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-0.593;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr14	95057374	rs201105278	TTCCAC	T	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	95057401	rs2854940	T	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	95058360	rs6109	A	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	95058462	rs6116	A	C	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:27,81:0.75:108
chr14	95058631	rs6108	A	T	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,46:0.67:69
chr14	95078677	rs1884082	G	T	4133.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.540;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.419;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.75;ReadPosRankSum=-0.549;SOR=0.540;set=HC	GT:AD:AF:DP	1/1:1,166:0.99:167
chr14	95080803	rs4934	G	A	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	95085707	rs61737404	C	T	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:93,186:0.67:279
chr14	95088801	rs1802958	A	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:56,94:0.63:150
chr14	95107973	rs4905226	C	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:152,56:0.27:208
chr14	95110017	rs1884084	G	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:16,76:0.83:92
chr14	95566068	rs201969638	TACACACACACACAC	T	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.000;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr14	95566103	rs35300142	AC	A	1501.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.88;ReadPosRankSum=3.237;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:25,59:0.70:84
chr14	95566105	rs367764979	ACAC	A	505.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=2.640;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr14	95566108	.	C	A	530	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=4;HapScore=2;MGOF=47;MMLQ=27;MQ=59.97;NF=20;NR=12;PP=530;QD=17.6491003921;SC=CACACACACACAAACTTACCA;SbPval=0.53;Source=Platypus;TC=46;TCF=29;TCR=17;TR=32;WE=95566116;WS=95566098;set=Platypus	GT:AD:AF:DP	1/0:14,32:0.70:46
chr14	95581899	rs2275182	G	A	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:66,40:0.38:106
chr14	95581961	rs11624081	G	A	4269.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:113,206:0.65:319
chr14	95604245	rs140969547	G	A	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.101;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-1.494;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:25,33:0.57:58
chr14	95682152	.	CTGTGTGTGTGTGTG	CTG,C	384	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.62;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=16;MMLQ=26;MQ=60.04;NF=0,0;NR=14,14;PP=384,347;QD=27.6428571429;SC=CTCTCTCTCTCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=21;TCF=1;TCR=20;TR=14,14;WE=95682173;WS=95682140;set=Platypus	GT:AF:DP	0/1:0.67:21
chr14	95688959	rs945456	C	G	2455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.844;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=2.006;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:57,117:0.67:174
chr14	95696275	rs72710126	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:25,58:0.70:83
chr14	95786169	.	C	CGGCGGGCGCGGAGAGCCTGGCT	609.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.613;QD=8.47;ReadPosRankSum=0.008;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:52,20:0.28:72
chr14	95875342	rs3742345	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr14	95884323	rs12434757	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr14	95898486	rs112612004	G	GA	286.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.075;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.799;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr14	95898487	rs1187747	G	A	2147.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=27.54;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	95898607	rs17092197	A	G	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr14	95898675	rs8015054	G	A	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	95899477	rs10139523	T	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr14	95899773	rs12895537	C	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:106,49:0.32:155
chr14	95911060	rs8007261	C	T	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:32,77:0.71:109
chr14	95912388	rs61749972	G	A	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:63,172:0.73:235
chr14	95916566	rs10148435	G	A	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr14	95918513	rs6575514	G	A	2476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.806;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:84,120:0.59:204
chr14	95921741	rs4905324	C	T	3188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-1.089;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:89,149:0.63:238
chr14	95923421	rs375479710	CAA	C	609.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=6.85;ReadPosRankSum=2.493;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:54,35:0.39:89
chr14	95923470	rs146162422	ACTGTC	A	5435.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:78,137:0.64:215
chr14	95923670	rs2024863	A	C	7050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=0.483;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:147,328:0.69:475
chr14	95923756	rs10610273	GGT	G	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-1.179;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr14	95932223	rs12434921	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr14	95932628	rs4900270	T	C	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-1.001;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:106,51:0.32:157
chr14	95983469	rs114384043	C	G	9533.77	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:210,454:0.68:664
chr14	95983535	rs78676024	G	C	7145.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:149,326:0.69:475
chr14	95983684	rs138897943	A	AC	1227.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr14	95983689	rs112147303	C	G	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr14	96000090	rs45528633	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr14	96009307	rs716315	C	T	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	96103099	rs4905366	A	G	1892.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.37;ReadPosRankSum=-1.137;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:2,79:0.98:81
chr14	96103269	rs11160283	G	A	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	96129955	rs8015466	A	C	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-2.523;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:209,78:0.27:287
chr14	96131432	rs1743491	A	G	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:3,105:0.97:108
chr14	96135857	rs1748965	C	T	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:171,91:0.35:262
chr14	96152728	rs11160284	T	C	2377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=-0.900;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:31,112:0.78:143
chr14	96157187	rs1064017	G	A	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-1.057;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:298,106:0.26:404
chr14	96157331	rs2075770	G	T	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:46,131:0.74:177
chr14	96157482	rs1743530	C	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=1.330;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr14	96157698	rs1748958	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	96178689	rs142911529	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:94,38:0.29:132
chr14	96552961	rs61746546	G	A	8083.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:130,381:0.75:511
chr14	96556846	rs61985272	C	T	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	96556914	rs2093722	T	C	7678.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr14	96557121	rs10148419	T	C	6602.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr14	96671139	rs1799722	C	T	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:83,133:0.62:216
chr14	96671207	rs71103505	GGGTGGGGAC	G	1604.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:56,78:0.58:134
chr14	96703553	rs1800515	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:91,39:0.30:130
chr14	96704361	rs871547	G	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	96707457	rs5224	A	G	11488.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr14	96728943	.	CTT	C	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=1.463;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr14	96730142	rs2071084	A	G	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	96757361	rs10454690	T	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr14	96758160	rs2275022	C	T	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr14	96761514	rs45468796	T	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:116,45:0.28:161
chr14	96761557	rs1770547	A	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr14	96770720	rs8007718	T	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:24,76:0.76:100
chr14	96770952	rs34674555	CAA	C	1438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.130;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.627;QD=15.31;ReadPosRankSum=1.612;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:31,63:0.67:94
chr14	96771959	rs2289622	A	G	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	96772942	rs72704880	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.13;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr14	96776008	rs2289628	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.48;ReadPosRankSum=0.599;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	96778095	rs7359066	T	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr14	96781912	rs9323945	T	C	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	96783464	rs17094014	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr14	96783727	rs17094017	A	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.906;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr14	96790337	rs34296665	T	TA	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.507;QD=4.42;ReadPosRankSum=-0.954;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:82,41:0.33:123
chr14	96794877	.	T	TA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.164;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.473;QD=1.69;ReadPosRankSum=1.058;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr14	96795997	rs17094019	G	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.000;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr14	96797724	rs1822372	G	A	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	96800846	.	GA	G	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=-1.043;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:104,20:0.16:124
chr14	96813703	rs4905483	A	T	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	96829290	rs12434329	G	A	4484.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:93,213:0.70:306
chr14	96848899	rs4905486	A	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr14	96858667	rs3742473	A	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=6.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.305;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:111,41:0.27:152
chr14	96864309	rs8019939	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=-1.981;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr14	96864327	rs41301765	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	96871104	rs2275554	G	A	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=0.069;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:45,109:0.71:154
chr14	96871337	rs8009774	CC	TT	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;JOINED;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr14	96916228	rs10444759	C	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	96916232	rs11424079	G	GT	733.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	96922575	rs56356389	CAAA	C	408.82	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=20.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.44;SOR=3.350;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr14	96922752	rs2369679	C	G	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr14	97321689	rs2230532	C	T	2258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=0.167;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:415,161:0.28:576
chr14	97326804	.	TTC	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr14	97327098	rs10651861	T	TTG	939.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr14	97397509	rs28709257	G	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr14	98217929	rs12893126	T	C	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	98435696	rs2124843	T	C	11017.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr14	98444253	rs8015127	C	A	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	98444369	rs8016584	T	C	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	99392468	rs200318	C	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr14	99641568	.	C	T	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.854;QD=3.89;ReadPosRankSum=-1.405;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:191,68:0.26:259
chr14	99642360	rs1152783	C	G	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:43,125:0.74:168
chr14	99737635	.	G	GCGCCGCTGC	2349.73	.	AC=1;AF=0.500;AN=2;DP=329;set=Intersection	GT:AD:AF:DP	0/1:89,114:0.56:203
chr14	99871812	rs1262304	T	G	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	99876505	rs1047351	A	G	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	99924979	rs67963270	TAA	T	1725.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr14	99929801	rs2273386	G	A	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.502;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	99988724	rs2400681	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	100002473	rs12882209	A	G	8356.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr14	100046271	rs34139518	T	TC	3793.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=8.45;ReadPosRankSum=0.920;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:302,147:0.33:449
chr14	100069742	rs8007401	G	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	100119238	rs3825570	G	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=0.364;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:102,23:0.18:125
chr14	100123232	rs61984401	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	100125721	rs7145262	C	T	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:24,53:0.69:77
chr14	100125731	rs11621678	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:61,24:0.28:85
chr14	100129327	rs34890784	G	A	6660.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:143,311:0.69:454
chr14	100135306	rs12436072	G	A	2727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=4.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=-0.322;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:58,122:0.68:180
chr14	100141689	rs7158073	T	C	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.726;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:166,70:0.30:236
chr14	100158241	rs4900442	C	T	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	100166228	rs3742377	G	A	15026.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,583:1.00:583
chr14	100182082	rs3752957	T	C	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	100184589	rs7151522	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr14	100189423	rs12896665	A	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:23,51:0.69:74
chr14	100192685	rs141174869	G	GGGGCTGCT	1031.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr14	100341430	rs1191121	A	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:168,69:0.29:237
chr14	100357643	rs1191100	C	T	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:174,56:0.24:230
chr14	100360855	rs1191098	A	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr14	100380948	rs2250718	T	C	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=-2.721;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:26,80:0.75:106
chr14	100384232	rs2273704	A	C	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,63:0.66:96
chr14	100387242	rs34263849	A	AT	4329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.901;QD=14.63;ReadPosRankSum=0.076;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:83,213:0.72:296
chr14	100404351	rs2295787	T	C	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	100406193	rs4900449	T	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr14	100563943	rs3206354	G	A	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.039;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:137,38:0.22:175
chr14	100607360	rs1951486	T	C	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=7.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.798;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:99,31:0.24:130
chr14	100613093	rs2236317	C	T	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:93,238:0.72:331
chr14	100615205	rs2281660	G	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr14	100615665	rs4905936	T	C	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr14	100615961	rs4905937	C	T	10550.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:180,493:0.73:673
chr14	100625902	rs7157599	C	T	2199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.343;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:279,136:0.33:415
chr14	100625964	rs61165113	G	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:129,60:0.32:189
chr14	100740904	rs4905942	G	C	298.22	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr14	100758502	rs11557208	G	A	2452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=-0.617;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,116:0.79:147
chr14	100759046	rs3825555	C	A	17013.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr14	100759277	rs3742379	C	T	11221.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,424:1.00:424
chr14	100792093	rs9324019	C	G	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:130,49:0.27:179
chr14	100792220	rs7155877	C	T	20021.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.892;ClippingRankSum=0.000;DB;DP=790;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=-0.165;SOR=0.119;set=HC	GT:AD:AF:DP	1/1:2,779:1.00:781
chr14	100792482	rs1951519	C	A	13316.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:2,514:1.00:516
chr14	100795139	rs35007880	G	T	16507.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr14	100801423	rs2234532	T	C	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	100803364	rs2234530	A	G	6871.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	100803655	rs2234528	C	A	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	100808493	rs5810992	G	GA	2916.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr14	100808510	rs1373	T	A	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	100808845	rs9453	G	A	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	100813077	rs941923	T	C	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	100820980	rs1009812	G	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.51;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	100826773	rs2234524	C	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	100831835	rs1998902	C	T	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	100831916	.	C	CA	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=0.942;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr14	100832282	rs2146105	C	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	100832391	rs724391	T	C	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	100847523	rs2181170	T	C	8772.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr14	100847707	rs2273800	A	G	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr14	100847930	rs3742387	A	G	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr14	100934602	rs4905966	C	T	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr14	100995793	rs7493442	G	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr14	100996312	rs13065	T	C	8353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.518;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:173,397:0.70:570
chr14	101005215	rs12893951	T	C	9757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=2.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.52;ReadPosRankSum=1.546;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:114,284:0.71:398
chr14	101005236	rs12892571	A	G	8927.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:108,242:0.69:350
chr14	101007072	rs6575788	C	G	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	101034190	rs61993005	G	A	1502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-1.169;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:207,95:0.31:302
chr14	101034419	rs58030748	T	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr14	101036052	rs7141087	T	C	2448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=1.658;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:229,138:0.38:367
chr14	101138230	rs8011237	A	C	7438.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr14	101194944	rs10151914	T	G	158.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	101194952	rs200239189	T	TG	118	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	101198417	rs6575799	A	G	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr14	101301012	rs10132552	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.849;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:157,34:0.18:191
chr14	101302463	rs55996894	G	C	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr14	101302800	rs12889884	C	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-1.589;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr14	101311731	rs139003317	CCCT	C	10688.73	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:103,265:0.72:368
chr14	101335604	rs12886011	A	C	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	101340805	rs41286558	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:62,41:0.40:103
chr14	101347037	rs34696219	AG	A	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.799;QD=4.94;ReadPosRankSum=1.047;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:121,38:0.24:159
chr14	101348584	rs11623267	C	G	3122.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:65,145:0.69:210
chr14	101349017	rs6575805	A	G	7809.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr14	101349764	rs34163305	C	T	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:301,124:0.29:425
chr14	101350298	rs3825569	T	C	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	101350670	rs35401447	C	CTCT	735.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.977;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:103,25:0.20:128
chr14	101351283	rs41286564	C	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr14	101377736	rs9324026	A	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	101403072	rs1956732	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.79;ReadPosRankSum=1.960;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr14	101403075	rs1956731	C	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.94;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr14	101406011	rs1951026	G	A	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.556;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr14	101411953	rs12433065	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr14	101418192	rs10713875	TG	T	1113.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	101419612	rs144184046	G	A	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:36,65:0.64:101
chr14	101431194	rs4547276	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:97,34:0.26:131
chr14	101432440	rs111435301	C	CAGA	3448.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:208,98:0.32:306
chr14	101433378	rs11433801	C	CA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=2.005;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr14	101433552	rs2145502	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr14	101435371	rs12432302	A	G	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:91,60:0.40:151
chr14	101436159	rs34955121	GT	G	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=1.868;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr14	101439870	rs1956727	G	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr14	101439916	rs1956726	T	G	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:119,51:0.30:170
chr14	101441309	rs33946843	AGATT	A	64.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,4:0.15:26
chr14	101442218	rs12893444	A	G	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:217,93:0.30:310
chr14	101447517	rs10131435	A	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.280;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr14	101451034	rs34591858	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr14	101452574	rs4906029	T	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr14	101489703	rs111906529	T	C	2362.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:39,110:0.74:149
chr14	101492224	rs7141987	T	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr14	101495787	rs4906031	G	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	101496145	rs9324030	A	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr14	101507727	rs12894467	C	T	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.276;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=2.860;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:43,52:0.55:95
chr14	101509274	rs112829040	G	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr14	101514371	rs10132916	T	C	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:44,100:0.69:144
chr14	101518910	rs4906032	A	G	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:36,94:0.72:130
chr14	101522782	rs74784704	C	T	425.56	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr14	101526181	rs41286572	G	A	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=-2.737;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:44,85:0.66:129
chr14	101531854	rs61992671	A	G	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr14	102196930	rs12050380	T	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr14	102197694	rs72715630	G	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-0.805;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr14	102198596	rs3825559	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr14	102198689	rs45481791	C	T	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:115,158:0.58:273
chr14	102228198	rs373744052	GGGC	G	917.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.73;ReadPosRankSum=3.331;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr14	102229440	rs75376491	T	C	265.56	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr14	102285224	rs61994044	T	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr14	102285279	rs12433720	A	C	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:13,61:0.82:74
chr14	102322900	rs34486272	A	AC	50.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr14	102323093	rs61735777	T	C	2049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-1.567;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:275,132:0.32:407
chr14	102359489	rs2720219	A	G	2356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.578;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:298,148:0.33:446
chr14	102359568	rs2749902	A	G	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:106,43:0.29:149
chr14	102360916	rs2251246	G	A	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.481;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:230,74:0.24:304
chr14	102445607	rs2273438	T	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,29:0.33:88
chr14	102446029	.	A	G	1904.77	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:20,81:0.80:101
chr14	102449338	rs3830914	C	CT	805.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:92,43:0.32:135
chr14	102451983	rs2983422	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:106,51:0.32:157
chr14	102454115	rs12891749	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=1.655;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr14	102454933	rs4906172	C	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr14	102461209	rs4900529	A	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:144,62:0.30:206
chr14	102463407	rs12893215	A	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:134,70:0.34:204
chr14	102466178	rs8014930	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=1.750;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr14	102466253	rs8015117	C	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:71,16:0.18:87
chr14	102467847	rs2251644	A	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:96,29:0.23:125
chr14	102470762	rs2749896	G	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr14	102476130	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.021;QD=0.66;ReadPosRankSum=-0.141;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr14	102483881	rs3830915	C	CAGCT	1411.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:79,41:0.34:120
chr14	102485051	.	AT	A	62	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=4;HapScore=2;MGOF=3;MMLQ=28;MQ=59.93;NF=1;NR=3;PP=62;QD=24.0;SC=TAATCCCAGCATTTTGGGAGG;SbPval=0.18;Source=Platypus;TC=21;TCF=1;TCR=20;TR=4;WE=102485059;WS=102485041;set=Platypus	GT:AD:AF:DP	1/0:17,4:0.19:21
chr14	102486200	rs2180510	G	A	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-1.523;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:90,30:0.25:120
chr14	102493761	rs8010870	A	G	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:193,102:0.35:295
chr14	102494586	rs4906173	T	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr14	102496352	rs2253998	C	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr14	102496394	rs3830916	AGT	A	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.857;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=3.132;QD=1.80;ReadPosRankSum=-0.095;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:63,12:0.16:75
chr14	102499914	rs17512699	G	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.155;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.227;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr14	102504838	rs17541505	C	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:113,64:0.36:177
chr14	102505262	rs17512776	AC	A	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.662;QD=7.55;ReadPosRankSum=1.431;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr14	102510863	rs17512884	G	A	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:210,88:0.30:298
chr14	102510874	rs2273440	G	A	7734.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr14	102511064	.	AGGGTGGGTGGCGAGGGTCCCCTCACGCG	A	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.020;QD=5.44;ReadPosRankSum=-2.308;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr14	102514227	rs13749	T	C	11392.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr14	102514713	rs941792	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	102515015	rs1004903	G	A	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	102548224	rs2298877	T	C	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	102548384	rs6575895	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	102549262	rs10782495	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	102550569	rs3742429	G	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	102550803	rs4947	G	A	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	102551795	rs35308930	T	TTAA	6696.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	102552773	rs8004640	A	G	39884.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.61;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,894:1.00:894
chr14	102552775	rs3736807	T	G	39884.77	.	AC=2;AF=1.00;AN=2;DB;DP=887;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=45.22;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,882:1.00:882
chr14	102552856	rs36112665	G	A	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr14	102568296	rs10873531	G	A	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=1.537;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:37,98:0.73:135
chr14	102568367	rs8005905	T	A	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	102659667	rs8003556	T	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=-1.706;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:52,33:0.39:85
chr14	102659694	rs10140486	G	A	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=1.008;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:95,45:0.32:140
chr14	102675350	rs6575900	G	C	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:260,92:0.26:352
chr14	102808330	rs12590618	C	T	2754.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:70,122:0.64:192
chr14	102814945	rs7012	G	A	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:52,122:0.70:174
chr14	102873886	rs60215817	A	G	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr14	102894559	rs34120189	GT	G	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.133;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=5.27;ReadPosRankSum=2.152;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr14	102894593	rs1309353	G	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	102904551	.	C	CCCCGCTCCCTGCT	1508.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr14	102918686	rs1190554	T	C	2182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.421;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:401,145:0.27:546
chr14	102964654	rs2403058	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:47,11:0.19:58
chr14	102965047	rs3742437	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr14	102965435	rs3783381	A	G	9538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=914;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=1.168;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:624,275:0.31:899
chr14	102965437	rs3783382	A	T	9538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.931;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:619,274:0.31:893
chr14	103059220	rs1057881	G	A	2343.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.972;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.343;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.67;ReadPosRankSum=1.860;SOR=0.499;set=HC	GT:AD:AF:DP	1/1:1,94:0.99:95
chr14	103188738	rs61739374	C	T	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	103192774	rs372942415	CT	C	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.328;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:100,44:0.31:144
chr14	103336804	rs28670970	C	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=1.527;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:6,31:0.84:37
chr14	103341865	rs10668366	G	GT	91.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.17;ReadPosRankSum=-1.732;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr14	103342049	rs1131877	T	C	3860.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:44,184:0.81:228
chr14	103357603	rs2273393	G	T	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:47,102:0.68:149
chr14	103370163	rs9671376	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:50,102:0.67:152
chr14	103388999	rs2295828	T	C	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=2.365;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr14	103389003	rs2295829	G	C	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=2.776;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr14	103396706	rs148815688	C	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	103397055	rs1190233	G	C	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-1.035;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:95,22:0.19:117
chr14	103400350	rs17101071	C	T	174.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.43;ReadPosRankSum=-0.589;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr14	103406075	rs17101081	G	A	9544.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:198,441:0.69:639
chr14	103412101	rs10138676	C	T	4200.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:106,203:0.66:309
chr14	103412268	rs2403107	T	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	103413941	rs8007924	T	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	103417030	rs12100549	C	T	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:32,61:0.66:93
chr14	103426095	rs34440792	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=1.055;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr14	103426198	.	G	A	48	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5210;HP=20;HapScore=4;MGOF=26;MMLQ=27;MQ=58.06;NF=2;NR=4;PP=48;QD=13.7952020912;SC=AAAAAAAAAAGGGGTCAGGCT;SbPval=0.35;Source=Platypus;TC=12;TCF=6;TCR=6;TR=6;WE=103426206;WS=103426186;set=Platypus	GT:AD:AF:DP	1/0:6,6:0.50:12
chr14	103429420	rs34301396	T	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr14	103434530	rs2093414	T	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.81;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	103434739	rs2896462	A	G	7306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-2.090;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:183,347:0.65:530
chr14	103440282	rs1018550	G	T	9501.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.32;ReadPosRankSum=-0.629;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:2,359:0.99:361
chr14	103440473	rs8009219	G	C	10765.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr14	103440618	.	TAC	T	36	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=23;MQ=57.91;NF=1;NR=0;PP=36;QD=39.0;SC=TTTTTTTACTTACACACACAC;SbPval=0.2;Source=Platypus;TC=5;TCF=1;TCR=4;TR=1;WE=103440627;WS=103440608;set=Platypus	GT:AD:AF:DP	0/1:4,1:0.20:5
chr14	103449863	rs36061149	C	CA	676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=5.784;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.673;QD=2.60;ReadPosRankSum=1.252;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:178,82:0.32:260
chr14	103449887	.	TCTTA	T	13017.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;ClippingRankSum=0.000;DP=467;ExcessHet=3.0103;FS=3.727;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.907;QD=28.86;ReadPosRankSum=0.257;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:128,323:0.72:451
chr14	103453067	rs35202201	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr14	103570134	rs373916287	CGT	C	48.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:69,12:0.15:81
chr14	103576415	rs729184	A	G	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	103593950	rs1132339	C	G	14236.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr14	103595997	rs2234130	G	C	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	103596488	rs2234131	G	A	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr14	103596609	rs2234133	T	A	11142.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,446:1.00:446
chr14	103597565	rs749206	G	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	103599938	rs2234143	C	T	7725.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr14	103602278	rs710100	A	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	103802918	rs11326883	CA	C	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=1.623;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:36,33:0.48:69
chr14	103804417	rs2274191	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr14	103805947	rs34222936	ATTG	A	1505.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr14	103806219	rs3783393	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr14	103852725	rs3825566	C	T	4550.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:126,219:0.63:345
chr14	103915215	rs56683493	GTGTT	G	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.47;ReadPosRankSum=1.437;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	103915225	rs58490269	GA	G	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=0.638;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr14	103918182	rs2273702	G	C	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	103923414	rs2273700	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.88;ReadPosRankSum=0.175;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr14	103923475	rs2273699	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=1.766;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr14	103928657	rs4906326	T	A	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	103932888	rs1951393	C	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	103933341	rs71460680	CAA	C,CA	276.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.802;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.66;MQRankSum=0.000;QD=23.06;ReadPosRankSum=-1.017;SOR=1.033;set=HC	GT:AD:AF:DP	1/2:1,6,5:0.50,0.42:12
chr14	103933348	rs201971883	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-0.539;QD=6.74;ReadPosRankSum=2.042;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr14	103934488	rs10137161	T	C	6704.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	103946636	rs8014010	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	103957318	.	G	C	331.77	.	AC=1;AF=0.500;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	0/1:84,26:0.24:110
chr14	103964807	rs202211193	A	AT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.138;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr14	103986255	rs1803283	C	T	5671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=0.716;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:91,267:0.75:358
chr14	103987305	rs8017780	C	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:114,59:0.34:173
chr14	103988180	rs1136165	G	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chr14	103995489	rs2765038	C	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	103996396	rs2765037	G	A	6661.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr14	103996733	rs2756138	C	G	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	104000802	rs11350625	AG	A	264.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr14	104001517	rs2756119	G	A	4500.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:101,208:0.67:309
chr14	104027557	rs11625397	C	T	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr14	104029792	rs2296483	G	A	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.683;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:59,24:0.29:83
chr14	104129352	rs7150141	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr14	104136394	rs77849213	A	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr14	104136469	rs11333716	CT	C	3858.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;MQ=60.76;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	104139570	rs11160757	G	T	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	104143928	rs4906357	A	C	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	104165753	rs861539	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:93,48:0.34:141
chr14	104167075	rs861537	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:89,32:0.26:121
chr14	104167545	rs709399	G	A	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.410;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:195,66:0.25:261
chr14	104167564	rs861536	A	G	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-1.035;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:146,48:0.25:194
chr14	104172807	rs861531	C	A	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:150,65:0.30:215
chr14	104172877	rs3212061	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr14	104174825	rs1799795	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr14	104177190	.	AAC	A,AACACACACAC	1052.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=62;set=Intersection	GT:AF:DP	0/1:0.67:36
chr14	104193024	rs79445108	G	A	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:34,80:0.70:114
chr14	104194196	rs1535100	C	G	9229.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr14	104194278	rs1535099	C	T	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	104261002	.	TA	T	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=4.419;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:173,50:0.22:223
chr14	104322573	rs45567035	G	A	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:223,105:0.32:328
chr14	104394835	rs9324065	T	C	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	104429302	rs140667603	A	AGT	537.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr14	104429453	rs6576013	A	G	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	104465037	rs10133836	T	C	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	104465128	.	C	CT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.723;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr14	104465177	rs2005081	T	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=0.068;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr14	104470698	rs200858855	GTTTA	G	368.74	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	104481016	rs7150795	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	104484346	rs34317359	G	A	39.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.95;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr14	104484646	rs12589669	T	C	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-0.198;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr14	104498472	rs4906405	G	A	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	104500427	rs10150865	A	G	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	104500527	.	TTTC	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.10;ReadPosRankSum=1.180;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr14	104501551	rs3830999	AT	A	361.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr14	104518453	rs7150461	A	G	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	104559623	rs941952	T	C	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.488;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:135,48:0.26:183
chr14	104561998	rs1770983	T	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:333,124:0.27:457
chr14	104569709	rs1467844	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	104570904	rs1744299	T	C	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	104571826	rs1744300	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	104573690	rs1744301	A	G	4623.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	104575466	rs1771012	C	T	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	104575531	rs1744302	C	G	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	104578817	rs11850264	G	A	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	104624342	rs28718558	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr14	104640011	rs2275593	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr14	104641612	rs4906422	T	C	4685.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DB;DP=1080;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.427;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:744,308:0.29:1052
chr14	104642341	rs2487304	A	G	2763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-1.691;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:525,194:0.27:719
chr14	104642422	rs3742947	A	G	2712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=1.139;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:418,178:0.30:596
chr14	104643409	rs2487303	A	G	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-2.237;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:349,107:0.23:456
chr14	104644147	rs11621644	C	T	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:168,86:0.34:254
chr14	104645755	rs35751202	G	GC	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.565;QD=5.96;ReadPosRankSum=-1.959;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr14	104647224	rs884996	C	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr14	104710505	rs7142555	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.192;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr14	104940930	rs28453989	C	T	8456.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=26.10;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	105055118	rs111285011	TGACGGGCAG	T	1607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.274;QD=9.24;ReadPosRankSum=-0.153;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:125,49:0.28:174
chr14	105055291	rs3840008	TG	T	711.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr14	105055304	rs11160811	A	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr14	105055359	rs3803318	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr14	105057948	rs3803317	C	T	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:27,94:0.78:121
chr14	105059573	rs28656783	C	T	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=2.068;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:20,54:0.73:74
chr14	105060024	rs12879330	A	G	1773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.093;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.56;ReadPosRankSum=0.000;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:14,46:0.77:60
chr14	105060029	rs12880651	T	C	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=8.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.40;ReadPosRankSum=0.150;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:13,41:0.76:54
chr14	105063253	rs11629201	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr14	105070791	rs3803313	G	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr14	105150273	rs7153053	C	T	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	105167807	rs4983530	C	T	4989.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	105170108	rs374945781	GCAT	G	1067.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.323;MLEAC=1;MLEAF=0.500;MQ=65.43;MQRankSum=7.885;QD=12.71;ReadPosRankSum=-0.255;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:34,50:0.60:84
chr14	105170109	.	CATGATGTCT	GATGATGTCT	2964	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=8;MMLQ=27;MQ=63.19;NF=10,29;NR=16,15;PP=2964,2224;QD=20;SC=GTGTGTCCAGCATGATGTCTC;SbPval=0.3;Source=Platypus;TC=42;TCF=13;TCR=29;TR=26,44;WE=105170125;WS=105170099;set=Platypus	GT:AD:AF:DP	0/1:29,44:0.60:73
chr14	105170109	.	CATGATGTCT	C	2964	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=8;MMLQ=27;MQ=63.19;NF=10,29;NR=16,15;PP=2964,2224;QD=20;SC=GTGTGTCCAGCATGATGTCTC;SbPval=0.3;Source=Platypus;TC=42;TCF=13;TCR=29;TR=26,44;WE=105170125;WS=105170099;set=Platypus	GT:AD:AF:DP	0/1:16,26:0.62:42
chr14	105170112	rs199612689	GATGTCT	G	1055.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.223;MLEAC=1;MLEAF=0.500;MQ=65.19;MQRankSum=8.136;QD=12.00;ReadPosRankSum=-0.529;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:38,50:0.57:88
chr14	105170146	.	TC	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=3;HapScore=1;MGOF=62;MMLQ=28;MQ=61.9;NF=4;NR=17;PP=2962;QD=20;SC=GTCTCTGGTGTCCCATGAGTG;SbPval=0.73;Source=Platypus;TC=56;TCF=13;TCR=43;TR=21;WE=105170154;WS=105170136;set=Platypus	GT:AD:AF:DP	1/0:35,21:0.38:56
chr14	105170221	rs7145566	C	T	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:77,226:0.75:303
chr14	105172529	rs118017785	C	T	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.19;ReadPosRankSum=1.588;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:18,76:0.81:94
chr14	105173454	rs57402537	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr14	105173862	.	ACCCCAC	A	3613.73	.	AC=1;AF=0.500;AN=2;DP=237;set=Intersection	GT:AD:AF:DP	0/1:27,89:0.77:116
chr14	105174731	rs149923432	C	CG	418.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;MQ=61.34;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr14	105175085	rs11850821	A	G	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:41,77:0.65:118
chr14	105177351	rs3840006	CA	C	2869.73	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:319,167:0.34:486
chr14	105178089	rs4983531	T	C	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-1.869;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr14	105178098	rs4983532	G	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.895;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr14	105179043	rs4497619	G	C	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	105179081	rs10144190	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,25:0.26:95
chr14	105179194	rs10133301	T	C	7951.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr14	105180484	rs9672043	C	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:69,39:0.36:108
chr14	105180565	rs4983535	T	C	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:233,113:0.33:346
chr14	105180706	rs1128840	A	G,C	10986.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.03;ReadPosRankSum=-1.638;SOR=0.861;set=HC	GT:AD:AF:DP	1/2:2,339,136:0.71,0.29:477
chr14	105180785	rs34251364	C	T	8420.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:197,393:0.67:590
chr14	105182391	.	C	T	3534.77	.	AC=1;AF=0.500;AN=2;DP=214;set=Intersection	GT:AD:AF:DP	0/1:50,156:0.76:206
chr14	105196365	rs33958252	T	C	4906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=0.917;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:103,234:0.69:337
chr14	105201596	rs7149183	T	C	528.53	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr14	105207134	rs3803307	A	G	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:71,163:0.70:234
chr14	105207642	rs45463395	C	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr14	105208037	rs4983539	A	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr14	105208057	rs4983384	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr14	105211426	rs7155192	G	A	346.98	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr14	105213343	rs6644	A	G	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:63,177:0.74:240
chr14	105219467	rs3809453	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr14	105219976	rs12889167	T	C	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:23,98:0.81:121
chr14	105220210	rs7151424	G	A	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr14	105222037	rs1132975	C	T	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:68,119:0.64:187
chr14	105223160	rs148424950	C	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=-1.250;QD=4.14;ReadPosRankSum=-1.961;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:70,27:0.28:97
chr14	105223194	rs34992074	C	CAT	1911.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:11,48:0.81:59
chr14	105223525	rs12590163	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr14	105233095	rs2498804	C	A	1917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=2.173;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:51,92:0.64:143
chr14	105238591	rs55839843	CCTGAG	C	1395.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr14	105238604	rs2498800	C	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr14	105238636	rs17846832	G	C	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:42,91:0.68:133
chr14	105239192	rs2494732	T	C	594.53	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr14	105242228	rs2498797	T	C	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:34,91:0.73:125
chr14	105242831	rs3001371	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr14	105242966	rs2494735	T	C	5178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-0.491;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:140,246:0.64:386
chr14	105246325	rs2494737	T	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr14	105246692	rs12588965	T	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr14	105258892	rs2494748	CA	TG	3158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=1.847;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:461,153:0.25:614
chr14	105267579	rs12878684	A	G	1925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.120;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:287,126:0.31:413
chr14	105268228	rs4983387	G	A	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:226,121:0.35:347
chr14	105309252	rs12895703	T	C	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.94;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	105309256	rs12894371	A	T	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	105309608	rs12878750	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	105335049	rs12431850	C	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	105344111	rs78118267	G	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	105344157	rs75824199	G	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	105344188	.	TCCCCC	T,TC	9874.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=258;set=Intersection	GT:AF:DP	1/2:0.13,0.86:246
chr14	105344293	rs61995995	C	T	28404.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr14	105344318	rs2304758	G	A	26853.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr14	105344347	rs2304757	C	G	13342.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr14	105344419	rs34009344	A	G	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	105344603	rs41310934	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	105344761	rs41317300	C	T	12313.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr14	105344872	rs61995998	C	T	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	105349220	rs2028415	T	G	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	105349388	rs2028414	A	C	9628.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr14	105349877	rs10145119	C	T	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.04;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	105349886	rs10145122	C	T	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.73;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	105349891	rs10145270	G	A	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	105349897	rs10145031	A	G	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.04;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	105350355	rs2841236	A	G	2864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=2.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=1.926;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:625,210:0.25:835
chr14	105350799	rs9788593	C	T	14994.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,587:1.00:587
chr14	105350868	rs9788594	C	T	6242.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr14	105351637	rs2582549	A	G	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	105351673	rs894038	C	T	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	105352255	rs2251389	T	A	12189.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,473:1.00:473
chr14	105352651	rs62641737	C	T	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:42,102:0.71:144
chr14	105354293	rs2582548	A	G	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	105356137	rs2919629	G	C	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=26.89;SOR=1.120;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	105356240	.	CAAATGGATGGAT	CGATGGAT,C	621.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=29;set=Intersection	GT:AF:DP	0/1:0.93:27
chr14	105356241	.	A	G	166	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=3;MGOF=48;MMLQ=23;MQ=63.2;NF=2;NR=7;PP=166;QD=22.3079125052;SC=ATGGATGGACAAATGGATGGA;SbPval=0.52;Source=Platypus;TC=16;TCF=3;TCR=13;TR=9;WE=105356259;WS=105356230;set=Platypus	GT:AD:AF:DP	1/1:7,9:0.56:16
chr14	105356247	.	ATGGATGG	A	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.92;MQRankSum=0.994;QD=23.03;ReadPosRankSum=-2.377;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,25:0.93:27
chr14	105359306	rs3742939	G	C	7028.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr14	105359827	rs2247712	T	C	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	105360746	rs2841244	T	C	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr14	105363157	rs7152667	A	G	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	105363202	rs10147348	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	105393556	rs2841280	G	C	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.652;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:134,43:0.24:177
chr14	105393707	rs879448	C	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr14	105398787	rs2582533	G	C	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,55:0.71:77
chr14	105404384	rs1048257	T	C	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:44,80:0.65:124
chr14	105405599	rs3742935	G	C	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:65,127:0.66:192
chr14	105405942	rs28454709	G	A	3294.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:71,145:0.67:216
chr14	105406238	rs2819419	A	C	5976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.011;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=-0.093;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:118,267:0.69:385
chr14	105406372	rs61421370	C	T	4907.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:85,225:0.73:310
chr14	105407031	rs11623422	A	G	5317.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:126,248:0.66:374
chr14	105407208	rs11851053	T	C	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:27,121:0.82:148
chr14	105407798	rs4465542	T	C	3679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=2.066;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:63,172:0.73:235
chr14	105408182	rs9672139	T	G	3598.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:83,157:0.65:240
chr14	105408315	rs28600075	T	C	7761.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:198,373:0.65:571
chr14	105408811	rs2819421	A	G	8172.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:190,386:0.67:576
chr14	105408955	rs2819422	A	G	8425.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:194,397:0.67:591
chr14	105409907	rs10141053	T	C	9776.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:199,462:0.70:661
chr14	105410183	rs10438246	T	C	3032.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:72,141:0.66:213
chr14	105410411	rs11160825	C	T	9868.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:216,461:0.68:677
chr14	105410775	rs2819424	A	G	10027.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:191,468:0.71:659
chr14	105410827	rs28380382	C	T	11333.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:207,519:0.71:726
chr14	105411153	rs34499888	G	A	3756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.228;QD=15.15;ReadPosRankSum=1.783;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:83,165:0.67:248
chr14	105411700	rs4264326	A	G	5084.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:105,236:0.69:341
chr14	105411781	rs10438247	G	A	8303.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:149,378:0.72:527
chr14	105411957	rs373797895	G	A	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:200,69:0.26:269
chr14	105411971	rs28737397	T	C	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.679;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=38.784;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-12.777;QD=5.00;ReadPosRankSum=-6.539;SOR=3.075;set=HC	GT:AD:AF:DP	0/1:178,39:0.18:217
chr14	105412005	rs28564728	A	G	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-11.799;QD=2.18;ReadPosRankSum=0.800;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:125,16:0.11:141
chr14	105412009	rs28714612	A	G	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-10.953;QD=2.21;ReadPosRankSum=0.948;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:121,18:0.13:139
chr14	105412066	rs77154428	C	T	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.48;MQRankSum=-6.755;QD=4.31;ReadPosRankSum=-0.423;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:60,27:0.31:87
chr14	105412541	rs12433837	CA	TG	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;JOINED;set=Intersection	GT:AD:AF:DP	0/1:92,110:0.54:202
chr14	105412554	rs12436986	T	G	3331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.678;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.111;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=-10.521;QD=22.06;ReadPosRankSum=-0.937;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:71,80:0.53:151
chr14	105412561	rs3000771	C	T	2727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.706;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=7.135;MLEAC=1;MLEAF=0.500;MQ=52.68;MQRankSum=-9.178;QD=21.31;ReadPosRankSum=-1.606;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:59,69:0.54:128
chr14	105413204	rs2582514	G	T	9813.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:166,253:0.60:419
chr14	105413223	rs55797226	A	G	10124.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:173,272:0.61:445
chr14	105413790	rs11848564	G	A	11175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.220;QD=16.24;ReadPosRankSum=1.805;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:190,498:0.72:688
chr14	105414238	rs60754080	C	A	11811.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:173,303:0.64:476
chr14	105414252	rs60106058	C	T	11972.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:193,318:0.62:511
chr14	105414280	rs2819429	T	G	14913.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr14	105414629	rs72702027	G	A	4555.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:93,197:0.68:290
chr14	105414790	rs2582513	A	G	8812.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:190,395:0.68:585
chr14	105414810	rs10145032	C	G	8090.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:193,356:0.65:549
chr14	105415200	rs10145566	G	C	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:59,117:0.66:176
chr14	105415229	rs10134675	T	C	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.02;QD=31.28;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	105415229	.	TG	CA,CG	953	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=48;MMLQ=23;NF=14,32;NR=17,42;PP=248,953;QD=9.72477015685;SC=GGGAGACTCATGTCGGCCTCC;SbPval=0.49;Source=Platypus;TC=75;TCF=32;TCR=43;TR=31,74;WE=105415238;WS=105415219;set=Platypus	GT:AF:DP	0/1:0.41:75
chr14	105415230	rs377764513	G	A	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.490;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-0.968;QD=6.70;ReadPosRankSum=-1.340;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:99,37:0.27:136
chr14	105415250	rs201959909	G	C	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.441;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-2.292;QD=6.92;ReadPosRankSum=1.298;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:77,20:0.21:97
chr14	105415257	rs201068450	A	G	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=54.76;MQRankSum=-2.136;QD=7.38;ReadPosRankSum=0.591;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr14	105415259	rs199967385	C	G	576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.261;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-2.233;QD=7.21;ReadPosRankSum=0.830;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:62,18:0.23:80
chr14	105415279	rs201127689	T	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.456;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.10;MQRankSum=-0.692;QD=22.56;ReadPosRankSum=-1.107;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr14	105415281	rs146449084	G	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.68;MQRankSum=-0.997;QD=23.34;ReadPosRankSum=-1.957;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr14	105415290	.	A	C	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=46.43;MQRankSum=-1.493;QD=19.23;ReadPosRankSum=-1.568;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr14	105415293	rs57414669	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=7.570;MLEAC=1;MLEAF=0.500;MQ=42.75;MQRankSum=-1.841;QD=22.80;ReadPosRankSum=-3.161;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr14	105415299	rs59107644	A	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=44.03;MQRankSum=-1.383;QD=29.89;ReadPosRankSum=-1.922;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr14	105415745	rs117379881	C	G	10998.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.49;QD=45.26;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	105415748	rs118171013	G	A	11153.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.46;QD=43.57;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr14	105416010	rs2582511	T	C	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	105416220	rs2819435	T	A	13972.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr14	105417222	rs2013274	C	T	7459.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.77;QD=44.14;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	105417225	rs2894635	C	G	7434.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.37;QD=45.61;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	105417228	rs2248960	C	T	7035.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.61;QD=45.69;SOR=1.309;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	105417243	rs77111827	T	C	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	105417285	rs76453246	C	T	866.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=7.404;MLEAC=2;MLEAF=1.000;MQ=42.89;MQRankSum=1.669;QD=26.27;ReadPosRankSum=0.948;SOR=3.092;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr14	105417774	rs2013228	G	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=25.57;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	105417894	rs2819440	C	G	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	105418149	rs147978925	A	T	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.679;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=24.726;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-10.206;QD=7.53;ReadPosRankSum=-1.161;SOR=2.899;set=HC	GT:AD:AF:DP	0/1:93,27:0.23:120
chr14	105418155	rs141600524	G	C	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.892;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=22.125;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-10.682;QD=8.50;ReadPosRankSum=-1.653;SOR=2.527;set=HC	GT:AD:AF:DP	0/1:92,32:0.26:124
chr14	105418166	rs78116894	T	C	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.328;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=9.271;MLEAC=1;MLEAF=0.500;MQ=55.79;MQRankSum=-10.981;QD=9.07;ReadPosRankSum=-2.826;SOR=1.383;set=HC	GT:AD:AF:DP	0/1:101,50:0.33:151
chr14	105418194	rs78447535	A	G	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:110,125:0.53:235
chr14	105420927	rs879210	A	G	8299.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:145,390:0.73:535
chr14	105421050	rs879209	T	G	3290.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:96,159:0.62:255
chr14	105421236	rs66540327	CAGCCAGCAGGGTAGTGA	C	974.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr14	105423891	rs149134261	G	A	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:82,225:0.73:307
chr14	105452035	rs10150682	A	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	105457771	rs2247140	A	G	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	105461067	rs894039	C	T	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	105478102	rs3803294	G	A	18777.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr14	105523663	rs7147439	G	A	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	105608784	rs79806511	G	A	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.770;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:305,128:0.30:433
chr14	105609335	rs10149229	A	G	7626.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:137,365:0.73:502
chr14	105611282	rs2272591	A	G	5153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-2.253;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:151,255:0.63:406
chr14	105614032	rs2242636	C	G	1627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=-2.918;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:26,74:0.74:100
chr14	105615026	rs2242634	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr14	105617042	rs1057744	C	T	8083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=0.549;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:212,381:0.64:593
chr14	105617550	rs3830678	C	CGCAGCCCCA	5942.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:39,153:0.80:192
chr14	105618670	rs2238287	T	C	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	105622056	rs2816679	A	G	14234.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr14	105634487	rs138903858	G	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-1.440;SOR=1.811;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr14	105643619	rs10139596	G	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr14	105643652	rs10139450	A	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	105644151	rs1882848	T	C	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	105647430	.	G	GGCGGGGGCGCGGGGGAC	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=2.251;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr14	105647562	rs67388067	GGCGGGGGCCGCGAGCTCT	G	324.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=40.59;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	105676048	rs3087836	G	C	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr14	105677489	.	C	T	3318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=2.225;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:63,160:0.72:223
chr14	105686570	rs8005486	T	C	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:40,96:0.71:136
chr14	105692697	rs12883636	G	C	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:40,73:0.65:113
chr14	105905126	rs4983620	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	105911639	rs6576102	G	A	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	105916420	rs4983409	C	T	15383.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr14	105924538	rs7492915	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	105924786	rs4074001	G	A	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	105929443	rs7143366	C	T	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr14	105929745	rs74092385	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:59,21:0.26:80
chr14	105930406	rs4983413	G	A	2363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-0.967;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:435,164:0.27:599
chr14	105930923	rs11845995	G	A	6872.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	105931585	rs4983339	A	G	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	105932636	rs34378689	C	CAG	1878.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr14	105935721	rs10150545	A	G	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	105935824	rs13707	G	A	10480.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr14	105936064	rs10150915	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	105936100	rs144496498	A	ACCTTGGCTGGTGGCC	3639.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.26;SOR=2.206;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	105945891	rs11849001	C	T	28343.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.394;ClippingRankSum=0.000;DB;DP=1099;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.27;ReadPosRankSum=1.179;SOR=0.247;set=HC	GT:AD:AF:DP	1/1:1,1078:1.00:1079
chr14	105953474	rs7160858	G	T	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	105953595	rs7140395	T	C	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=24.77;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	105960319	rs61641418	A	G	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:51,116:0.69:167
chr14	105962234	rs7494350	T	C	9810.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr14	105962369	rs7494717	A	G	7577.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr14	105963944	rs4983426	CT	TC	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	106054428	rs9972103	C	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.14;QD=28.37;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	106054456	rs61984162	A	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.74;QD=26.28;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	106066454	rs4983454	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	106067618	rs12884681	G	A	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	106110137	rs8009156	C	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=1.329;QD=4.25;ReadPosRankSum=0.338;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr14	106110330	rs8014709	T	C	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	106173790	rs17349690	A	G	6194.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:104,292:0.74:396
chr14	106173808	rs371291470	G	A	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.617;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=40.666;MLEAC=1;MLEAF=0.500;MQ=49.00;MQRankSum=-7.667;QD=1.59;ReadPosRankSum=-4.497;SOR=2.632;set=HC	GT:AD:AF:DP	0/1:288,55:0.16:343
chr14	106173971	rs10220590	T	C	411.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=8.316;MLEAC=1;MLEAF=0.500;MQ=45.80;MQRankSum=2.301;QD=20.59;ReadPosRankSum=-1.067;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:2,18:0.90:20
chr14	106174654	.	C	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-7.444;QD=1.13;ReadPosRankSum=-0.212;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:73,16:0.18:89
chr14	106188045	rs11624491	C	T	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	106188155	rs78793953	C	T	2443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.862;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=51.73;MQRankSum=1.090;QD=10.14;ReadPosRankSum=-1.063;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:117,124:0.51:241
chr14	106188230	rs1134590	C	T	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.23;QD=26.05;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	106188309	rs11624581	C	T	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	106208082	rs11621259	G	T	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.15;QD=44.29;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	106208086	rs1045853	A	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.25;QD=44.35;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	106209340	rs11552998	T	C	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.74;QD=24.79;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	106236128	rs12890621	T	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	106236451	rs12895160	T	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.33;QD=42.56;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	106236458	rs11628528	C	T	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.54;QD=45.47;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	106237105	rs2753552	A	G	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	106237642	rs2983777	T	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	106237811	rs11621054	C	T	348.96	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr14	106303325	rs3764172	A	G	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	106303699	rs10139433	G	A	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	106303846	rs1005582	C	T	8285.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr14	106303948	rs1005581	A	G	6307.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr14	106304899	rs762807	G	T	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	106306841	rs709589	C	T	3518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=2.672;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:70,164:0.70:234
chr14	106307054	rs2753491	C	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	106307418	rs2753492	G	A	13676.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=-0.120;SOR=0.302;set=HC	GT:AD:AF:DP	1/1:1,529:1.00:530
chr14	106308199	rs77773513	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.639;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-1.654;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr14	106311030	rs12589570	GT	AC	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	106311374	rs2856940	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	106318248	rs1059713	A	T	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr14	106318440	rs2256589	T	C	6564.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	106318450	rs2753504	G	A	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	106321590	rs12365	C	A	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	106329435	rs1950943	T	G	12114.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr14	106329449	.	ATG	A	13654.73	.	AC=2;AF=1.00;AN=2;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr14	106329451	.	GTA	ACC	2937	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=1;MGOF=21;MMLQ=24;MQ=59.93;NF=61;NR=56;PP=2937;QD=20;SC=AGACGTCCATGTAGTAGTAGT;SbPval=0.46;Source=Platypus;TC=131;TCF=71;TCR=60;TR=117;WE=106329461;WS=106329440;set=Platypus	GT:AD:AF:DP	1/1:14,117:0.89:131
chr14	106329453	.	A	ACC	13769.73	.	AC=2;AF=1.00;AN=2;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.75;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr14	106329919	rs3752943	G	A	8984.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr14	106330320	rs2857385	A	C	19376.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr14	106330370	rs2857384	G	A	21591.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=886;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.069;QD=24.85;ReadPosRankSum=-0.542;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:6,863:0.99:869
chr14	106346740	rs2244932	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.735;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chr14	106346795	rs2244930	G	T	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,161:0.99:162
chr14	106347467	rs2516984	A	C	18356.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:1,692:1.00:693
chr14	106350569	rs2516978	C	T	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	106350623	rs2753523	G	C	7280.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.73;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr14	106350696	rs2857368	A	G	15348.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.812;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=-0.093;QD=25.54;ReadPosRankSum=-1.447;SOR=0.242;set=HC	GT:AD:AF:DP	1/1:1,600:1.00:601
chr14	106354353	rs2516972	C	T	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	106356974	rs2753529	G	C	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	106357749	rs2254707	C	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	106359259	rs2857366	A	G	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	106359327	rs3021114	GC	AG	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=55.50;QD=43.42;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	106361418	rs2753533	T	C	5858.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr14	106361561	rs61993631	GC	AT	4405.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.47;MQRankSum=-0.359;QD=26.38;ReadPosRankSum=-1.420;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr14	106361564	rs61993633	A	T	7642.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=44.69;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	106369335	rs2857353	G	A	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	106369534	rs2516960	A	G	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=26.32;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	106370603	rs2857350	G	C	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=25.37;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	106375551	rs2857348	C	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	106375555	rs2516957	A	G	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	106375638	rs2857347	T	C	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	106376144	rs2516956	A	G	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	106376354	rs2516955	A	G	12490.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr14	106377944	rs2516952	C	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	106380073	rs2856850	A	G	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	106380174	rs2157630	C	A	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=25.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	106382687	rs2857339	C	T	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=24.97;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr14	106385211	.	AGTGGGGTTC	A	502.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.08;QD=41.89;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	106385221	.	AG	A	592.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.08;QD=49.39;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	106385233	rs2857334	A	G	806.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.13;QD=44.82;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	106385234	rs2857333	C	T	806.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.85;QD=47.46;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	106385245	rs2857332	C	G	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.01;QD=40.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	106385332	rs2250700	G	C	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=26.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	106388588	rs2516944	A	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	106478137	rs147818197	C	T	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:116,53:0.31:169
chr14	106478194	rs76899215	C	T	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:256,121:0.32:377
chr14	106478311	.	A	ACCACTG	10137.73	.	AC=1;AF=0.500;AN=2;DP=814;set=Intersection	GT:AD:AF:DP	0/1:497,280:0.36:777
chr14	106478355	rs202003233	C	G	3895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.987;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=8.357;MLEAC=1;MLEAF=0.500;MQ=56.91;MQRankSum=-5.768;QD=8.89;ReadPosRankSum=-1.187;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:321,117:0.27:438
chr14	106478356	rs200185933	C	T	3895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=6.976;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-5.697;QD=9.02;ReadPosRankSum=-1.363;SOR=1.228;set=HC	GT:AD:AF:DP	0/1:316,116:0.27:432
chr14	106494269	rs12895651	T	C	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:76,207:0.73:283
chr14	106518848	rs2073679	T	C	4097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.294;QD=6.47;ReadPosRankSum=0.723;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:402,231:0.36:633
chr14	106539163	rs73371428	C	A	3679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-0.282;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:637,249:0.28:886
chr14	106539280	rs59165019	A	G	4360.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:516,254:0.33:770
chr14	106539394	rs59824431	A	G	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:335,127:0.27:462
chr14	106539581	.	G	GT	945.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=11.165;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=5.70;ReadPosRankSum=3.182;SOR=1.658;set=HC	GT:AD:AF:DP	0/1:133,33:0.20:166
chr14	106539582	rs59674169	G	GAT	945.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.176;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=11.165;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=5.70;ReadPosRankSum=2.977;SOR=1.658;set=HC	GT:AD:AF:DP	0/1:133,33:0.20:166
chr14	106539585	rs58691570	A	T	962.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.683;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=9.601;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=6.25;ReadPosRankSum=1.868;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:121,33:0.21:154
chr14	106539586	.	C	CT	1002.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.526;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=8.045;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=6.55;ReadPosRankSum=2.177;SOR=1.459;set=HC	GT:AD:AF:DP	0/1:121,32:0.21:153
chr14	106539587	.	C	CAGTA	1008.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.287;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=8.004;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=6.68;ReadPosRankSum=2.222;SOR=1.416;set=HC	GT:AD:AF:DP	0/1:120,31:0.21:151
chr14	106552310	rs8020204	G	A	2107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-2.026;QD=4.23;ReadPosRankSum=0.641;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:361,137:0.28:498
chr14	106578952	rs11160922	A	T	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	106579045	rs17112496	C	T	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.692;QD=3.68;ReadPosRankSum=0.677;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:219,78:0.26:297
chr14	106586231	rs10151633	C	T	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.854;QD=3.74;ReadPosRankSum=0.166;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:327,118:0.27:445
chr14	106586354	rs10131161	G	C	2232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.571;QD=4.27;ReadPosRankSum=-0.750;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:373,150:0.29:523
chr14	106641761	rs72695948	A	G	3444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=4.27;ReadPosRankSum=2.394;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:580,227:0.28:807
chr14	106667902	rs58794564	A	AC	26261.73	.	AC=2;AF=1.00;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	1/1:0,741:1.00:741
chr14	106691778	rs4470054	T	A	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=1048;ExcessHet=3.0103;FS=3.237;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-24.681;QD=1.35;ReadPosRankSum=6.097;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:940,106:0.10:1046
chr14	106691796	.	GTAA	G	1216.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DP=1096;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-31.937;QD=1.12;ReadPosRankSum=2.225;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:987,102:0.09:1089
chr14	106691800	.	C	G	1159.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DP=1083;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-31.718;QD=1.08;ReadPosRankSum=2.241;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:977,99:0.09:1076
chr14	106725538	rs71416657	G	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663;ClippingRankSum=0.000;DB;DP=863;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-5.919;QD=0.06;ReadPosRankSum=1.471;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:792,60:0.07:852
chr14	106725545	rs184685096	GT	AA	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=854;ExcessHet=3.0103;FS=1.085;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-6.231;QD=0.14;ReadPosRankSum=2.931;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:786,61:0.07:847
chr14	106733216	rs201747581	T	C	3161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=1040;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-17.306;QD=3.07;ReadPosRankSum=0.374;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:888,142:0.14:1030
chr14	106733223	rs200123370	T	G	2839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=1081;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-17.394;QD=2.66;ReadPosRankSum=0.965;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:930,137:0.13:1067
chr14	106733228	rs201071498	C	T	2676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=1103;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-18.246;QD=2.45;ReadPosRankSum=1.331;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:960,132:0.12:1092
chr14	106733254	rs200146986	G	C	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=1068;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-19.452;QD=0.50;ReadPosRankSum=-0.720;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:966,95:0.09:1061
chr14	106733261	.	G	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DP=1059;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-21.007;QD=0.28;ReadPosRankSum=-1.148;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:968,84:0.08:1052
chr14	106733437	rs112335453	G	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-4.293;QD=1.07;ReadPosRankSum=0.660;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:212,23:0.10:235
chr14	106733458	rs116600694	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-4.286;QD=1.25;ReadPosRankSum=1.229;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:193,21:0.10:214
chr14	106733461	rs78432605	C	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-4.242;QD=1.38;ReadPosRankSum=1.011;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:189,21:0.10:210
chr14	106733463	rs116472681	G	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-4.144;QD=1.43;ReadPosRankSum=0.621;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:189,22:0.10:211
chr14	106733520	rs2338199	C	A	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-5.021;QD=2.89;ReadPosRankSum=-1.670;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:187,30:0.14:217
chr14	106733532	rs116710349	G	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-5.507;QD=3.15;ReadPosRankSum=-1.621;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:191,32:0.14:223
chr14	106733555	rs8013154	A	G	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-5.334;QD=2.30;ReadPosRankSum=1.896;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:197,28:0.12:225
chr14	106733593	rs4511432	G	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-5.551;QD=1.13;ReadPosRankSum=1.717;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:145,29:0.17:174
chr14	106733638	rs8013719	G	C	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-5.247;QD=4.86;ReadPosRankSum=-0.513;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr14	106733653	rs114563889	A	C	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-4.543;QD=7.03;ReadPosRankSum=-1.602;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr14	106733679	rs116541104	G	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-2.239;QD=1.26;ReadPosRankSum=-0.256;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,4:0.15:26
chr14	106733682	rs114939362	G	C	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-3.004;QD=1.63;ReadPosRankSum=1.501;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:20,2:0.09:22
chr14	106791006	rs10148365	C	T	8788.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:406,427:0.51:833
chr14	106791119	rs4502119	A	G	10345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=1562;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-2.099;QD=6.66;ReadPosRankSum=3.236;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:980,573:0.37:1553
chr14	106791131	rs10148460	A	G	21384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=1554;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-2.758;QD=13.82;ReadPosRankSum=1.231;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:947,600:0.39:1547
chr14	106791200	rs8017285	GC	AG	15817.77	.	AC=1;AF=0.500;AN=2;DB;DP=1199;JOINED;set=Intersection	GT:AD:AF:DP	0/1:758,439:0.37:1197
chr14	106805236	rs61740539	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:93,28:0.23:121
chr14	106805278	rs61739320	A	G	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:154,83:0.35:237
chr14	106805381	rs77489245	T	G	6117.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:442,330:0.43:772
chr14	106805395	rs61995641	G	A	5551.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:462,311:0.40:773
chr14	106805408	rs61995642	C	T	5337.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:441,294:0.40:735
chr14	106805440	rs6576153	A	G	14443.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr14	106805508	rs4462488	G	A	5942.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr14	106845193	rs10129987	C	G	285.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.05;QD=31.75;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	106845209	rs10129994	C	G	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	106845308	rs112027281	A	T	4787.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:136,228:0.63:364
chr14	106845417	rs112759551	C	T	10638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.894;QD=13.64;ReadPosRankSum=1.417;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:280,500:0.64:780
chr14	106859070	rs74093595	G	A	234.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr14	106859191	rs61997354	G	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr14	106859351	rs1008525	G	C	1877.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.97;MQRankSum=-0.107;QD=25.38;ReadPosRankSum=-1.302;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:2,72:0.97:74
chr14	106859421	rs11160957	A	C	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.26;QD=22.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	106866427	rs75206251	G	A	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.851;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-8.251;QD=2.36;ReadPosRankSum=-9.082;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:341,46:0.12:387
chr14	106866434	rs79672195	C	T	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.928;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-8.107;QD=2.83;ReadPosRankSum=-8.407;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:356,61:0.15:417
chr14	106866449	rs78850219	T	C	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.094;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-7.177;QD=3.37;ReadPosRankSum=-7.089;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:415,124:0.23:539
chr14	106866465	rs78660098	A	G	2968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.496;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=2.800;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.600;QD=4.53;ReadPosRankSum=-3.789;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:472,184:0.28:656
chr14	106866565	rs58308167	C	A	26938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0.000;DB;DP=1838;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.621;QD=14.73;ReadPosRankSum=0.334;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:1047,782:0.43:1829
chr14	106866588	rs73379082	T	C	25332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=1688;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.936;QD=15.10;ReadPosRankSum=2.323;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:985,693:0.41:1678
chr14	106866654	rs111799426	T	C	13950.77	.	AC=1;AF=0.500;AN=2;DB;DP=1225;set=Intersection	GT:AD:AF:DP	0/1:776,428:0.36:1204
chr14	106866668	rs112298109	C	A	14928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.815;ClippingRankSum=0.000;DB;DP=1234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-4.030;QD=12.28;ReadPosRankSum=-1.254;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:810,406:0.33:1216
chr14	106866675	rs76077658	C	G	14335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.992;ClippingRankSum=0.000;DB;DP=1281;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-3.800;QD=11.33;ReadPosRankSum=-0.926;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:853,412:0.33:1265
chr14	106866748	rs73379084	A	T	10107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=1582;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-6.102;QD=6.46;ReadPosRankSum=2.102;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:988,576:0.37:1564
chr14	106866810	rs73379088	C	T	14595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=1146;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.875;QD=12.94;ReadPosRankSum=0.076;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:702,426:0.38:1128
chr14	106866822	rs113233536	C	G	13668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=1004;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-4.044;QD=13.86;ReadPosRankSum=-1.066;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:611,375:0.38:986
chr14	106866865	rs201138265	G	C	6262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.066;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-4.928;QD=11.86;ReadPosRankSum=0.509;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:351,177:0.34:528
chr14	106866869	rs201249856	G	A	6248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-4.836;QD=12.42;ReadPosRankSum=-0.998;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:330,173:0.34:503
chr14	106866891	rs200498236	G	T	4662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-4.386;QD=13.40;ReadPosRankSum=-5.691;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:227,121:0.35:348
chr14	106866893	rs201066866	G	A	4368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-4.325;QD=13.12;ReadPosRankSum=-6.578;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:215,118:0.35:333
chr14	106877300	rs17112731	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr14	106877390	rs11847522	C	G	3057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.502;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-2.691;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:244,160:0.40:404
chr14	106877445	rs60581578	C	T	16922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.677;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.742;QD=32.80;ReadPosRankSum=2.512;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:112,404:0.78:516
chr14	106877447	rs57593057	A	ATGATCT	17475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.734;QD=33.61;ReadPosRankSum=2.297;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:111,409:0.79:520
chr14	106877519	rs11847538	A	G	7216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.097;QD=14.49;ReadPosRankSum=1.139;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:288,210:0.42:498
chr14	106877535	rs73367258	C	G	6440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-3.003;QD=14.77;ReadPosRankSum=1.328;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:263,173:0.40:436
chr14	106877551	rs8020298	A	C	12389.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=34.42;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr14	106877553	rs376141717	C	G	5004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.145;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=7.413;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-3.100;QD=14.18;ReadPosRankSum=-0.402;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:219,134:0.38:353
chr14	106877555	rs369946732	C	T	4935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.368;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=5.828;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-3.112;QD=14.22;ReadPosRankSum=-0.544;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:216,131:0.38:347
chr14	106877583	rs34443934	T	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:162,62:0.28:224
chr14	106877618	rs11847658	G	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.579;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-9.629;QD=3.39;ReadPosRankSum=-2.088;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:114,22:0.16:136
chr14	106877637	rs11847603	A	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.499;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.407;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-9.952;QD=3.01;ReadPosRankSum=-0.553;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:106,18:0.15:124
chr14	106877700	rs11847691	G	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:156,82:0.34:238
chr14	106877753	rs35281264	A	G	4967.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:328,260:0.44:588
chr14	106877796	rs34195693	G	C	5793.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:379,303:0.44:682
chr14	106877816	.	AACT	A	2970	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=2;MGOF=20;MMLQ=27;MQ=56.69;NF=4;NR=69;PP=2970;QD=20;SC=CCCCAGTAGTAACTACTACTG;SbPval=0.94;Source=Platypus;TC=176;TCF=19;TCR=157;TR=73;WE=106877845;WS=106877806;set=Platypus	GT:AD:AF:DP	1/0:103,73:0.41:176
chr14	106877818	rs367947132	CTA	C	10363.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DB;DP=623;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-9.960;QD=16.80;ReadPosRankSum=3.817;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:339,278:0.45:617
chr14	106877821	rs371574132	CT	C	10384.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-9.786;QD=17.16;ReadPosRankSum=3.338;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:327,278:0.46:605
chr14	106877822	.	T	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=2;MGOF=20;MMLQ=27;MQ=56.92;NF=54;NR=69;PP=2962;QD=20;SC=TAGTAACTACTACTGCTGATG;SbPval=0.68;Source=Platypus;TC=292;TCF=139;TCR=153;TR=123;WE=106877845;WS=106877806;set=Platypus	GT:AD:AF:DP	1/0:169,123:0.42:292
chr14	106877836	rs143740707	C	T	9785.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.941;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-9.875;QD=18.26;ReadPosRankSum=1.630;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:280,256:0.48:536
chr14	106877836	.	CC	TA	2944	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;MMLQ=26;NR=67;PP=2944;QD=20;SC=GCTGATGGAGCCACCAGAGAC;Source=Platypus;TCF=122;WE=106877845;set=Platypus	GT:AD:AF:DP	0/1:157,117:0.43:274
chr14	106877837	rs145759866	C	A	9785.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.988;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-9.940;QD=18.36;ReadPosRankSum=1.791;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:280,253:0.47:533
chr14	106877912	rs74093494	G	C	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=7.564;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-14.348;QD=2.19;ReadPosRankSum=0.796;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:180,44:0.20:224
chr14	106877947	rs73367262	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-13.958;QD=0.55;ReadPosRankSum=-4.548;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:203,30:0.13:233
chr14	106878038	rs113208890	G	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-6.159;QD=1.19;ReadPosRankSum=-2.484;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:159,17:0.10:176
chr14	106878056	rs4774113	T	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-5.764;QD=1.73;ReadPosRankSum=0.703;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:139,17:0.11:156
chr14	106878067	rs4774114	T	G	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-5.427;QD=2.26;ReadPosRankSum=2.533;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:123,17:0.12:140
chr14	106878071	rs4774115	A	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-4.765;QD=2.06;ReadPosRankSum=3.692;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:120,16:0.12:136
chr14	106878131	rs34777410	G	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr14	106878169	rs35934377	G	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.42;ReadPosRankSum=-1.309;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr14	106878179	rs34552883	G	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.53;ReadPosRankSum=-0.876;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr14	106922048	rs140769652	A	AT	386.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr14	106922052	rs10782500	T	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr14	106922090	rs115402676	T	C	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.986;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:75,39:0.34:114
chr14	106922091	rs116801123	G	A	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=1.207;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:77,39:0.34:116
chr14	106922093	rs113887627	T	C	1401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=1.198;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:77,39:0.34:116
chr14	106922094	rs369957951	T	A	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=1.350;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:81,40:0.33:121
chr14	106922099	rs150390470	C	CA	1672.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:92,49:0.35:141
chr14	106922368	rs6576168	C	T	5172.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:48,233:0.83:281
chr14	106922411	rs8016915	A	C	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:63,50:0.44:113
chr14	106922435	rs8018413	T	C	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr14	106926107	rs7401587	T	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:79,32:0.29:111
chr14	106926145	rs7401516	C	G	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:187,89:0.32:276
chr14	106926146	rs61999675	G	A	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:152,130:0.46:282
chr14	106926167	rs7401540	G	A	5320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=2.255;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-8.236;QD=13.37;ReadPosRankSum=-1.487;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:254,144:0.36:398
chr14	106926176	rs7401517	C	T	5564.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:295,162:0.35:457
chr14	106926223	rs2467912	T	C	5106.77	.	AC=1;AF=0.500;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	0/1:530,289:0.35:819
chr14	106926287	rs2467911	G	A	10099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=1492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.256;QD=6.84;ReadPosRankSum=0.132;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:914,562:0.38:1476
chr14	106926311	rs4977158	T	G	12038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=1737;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.271;QD=7.03;ReadPosRankSum=1.656;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:1059,654:0.38:1713
chr14	106926388	rs2467910	T	C	12912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=1692;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.387;QD=7.76;ReadPosRankSum=-0.816;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:977,687:0.41:1664
chr14	106937467	.	G	GC	639.73	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	106940552	rs4977154	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:109,41:0.27:150
chr14	106967052	rs11848941	C	A	5594.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:108,256:0.70:364
chr14	107013201	rs2073673	G	T	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:396,172:0.30:568
chr14	107034981	rs2731202	G	C	12626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=875;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-1.012;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:271,595:0.69:866
chr14	107048885	rs200064890	C	T	4407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.594;ClippingRankSum=0.000;DB;DP=750;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=47.27;MQRankSum=-8.566;QD=6.01;ReadPosRankSum=0.208;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:473,261:0.36:734
chr14	107048929	rs35608607	T	C	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.858;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=45.55;MQRankSum=-4.266;QD=8.12;ReadPosRankSum=-0.718;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:128,58:0.31:186
chr14	107048939	rs199574916	T	C	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.068;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=6.678;MLEAC=1;MLEAF=0.500;MQ=43.46;MQRankSum=-0.054;QD=11.53;ReadPosRankSum=-2.151;SOR=1.496;set=HC	GT:AD:AF:DP	0/1:66,29:0.31:95
chr14	107048944	rs35850880	A	T	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.580;MLEAC=1;MLEAF=0.500;MQ=41.78;MQRankSum=0.643;QD=13.05;ReadPosRankSum=-0.771;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:33,38:0.54:71
chr14	107078567	rs2516904	T	C	2919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.078;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:453,188:0.29:641
chr14	107078790	rs1858692	C	T	3499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.917;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:539,230:0.30:769
chr14	107082871	rs144729059	A	ATGC	2120.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.13;QD=44.18;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	107082879	rs59681319	C	CG	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.92;QD=44.17;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	107082881	rs59072447	T	TA	2019.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.91;QD=48.09;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	107082882	rs61261254	G	GA	1929.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.86;QD=47.07;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	107082889	rs4043174	A	ATTT	1722.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.86;QD=43.07;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	107082897	rs2337902	T	A	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.75;QD=43.94;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	107113851	rs2072045	C	T	10439.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:225,479:0.68:704
chr14	107114009	rs11846079	T	C	8609.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:197,384:0.66:581
chr14	107114193	rs2073670	A	G	6589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.919;QD=15.22;ReadPosRankSum=1.183;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:129,304:0.70:433
chr14	107131037	rs199906835	GC	TT	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.438;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=8.103;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=-10.003;QD=2.53;ReadPosRankSum=1.111;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:320,46:0.13:366
chr14	107131164	rs6423677	A	C	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.751;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=30.243;MLEAC=1;MLEAF=0.500;MQ=49.43;MQRankSum=-10.686;QD=2.51;ReadPosRankSum=-4.609;SOR=2.619;set=HC	GT:AD:AF:DP	0/1:348,88:0.20:436
chr14	107131246	rs141606676	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.668;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.267;MLEAC=1;MLEAF=0.500;MQ=47.26;MQRankSum=-4.019;QD=0.24;ReadPosRankSum=1.531;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:138,16:0.10:154
chr14	107131290	rs149638514	T	C	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=20.147;MLEAC=1;MLEAF=0.500;MQ=46.86;MQRankSum=-1.157;QD=10.48;ReadPosRankSum=2.342;SOR=1.200;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr14	107131300	rs34376395	T	C	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=22.268;MLEAC=1;MLEAF=0.500;MQ=46.60;MQRankSum=-0.403;QD=15.88;ReadPosRankSum=1.611;SOR=2.664;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr14	107170005	rs1141720	T	C	3992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DB;DP=961;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.985;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:684,270:0.28:954
chr14	107170055	rs8009570	G	A	19202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.651;ClippingRankSum=0.000;DB;DP=1023;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=-1.290;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:518,499:0.49:1017
chr14	107170062	rs55891010	A	G	20412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.727;ClippingRankSum=0.000;DB;DP=1052;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.017;QD=19.52;ReadPosRankSum=-0.222;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:533,513:0.49:1046
chr14	107170077	rs11845244	C	T	20108.77	.	AC=1;AF=0.500;AN=2;DB;DP=1058;set=Intersection	GT:AD:AF:DP	0/1:509,544:0.52:1053
chr14	107170128	rs11558005	C	T	9159.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:358,440:0.55:798
chr14	107170207	rs11845287	C	T	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:211,241:0.53:452
chr14	107170219	rs2187989	C	G	4514.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:186,209:0.53:395
chr14	107170398	rs4448834	C	T	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:38,148:0.80:186
chr14	107170410	rs10220412	G	C	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:67,92:0.58:159
chr14	107178795	rs10144331	A	G	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	107178832	rs10144402	A	G	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr14	107178941	rs10133751	T	A	8887.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:162,411:0.72:573
chr14	107178965	rs2073669	A	C	8836.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:175,415:0.70:590
chr14	107179013	rs61732216	A	G	4165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-1.619;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:261,219:0.46:480
chr14	107179017	rs61732209	A	G	10782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=-0.334;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:146,314:0.68:460
chr14	107179106	rs10144703	C	T	4779.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:62,205:0.77:267
chr14	107179301	rs139226119	G	A	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:94,96:0.51:190
chr14	107198866	rs1987970	T	G	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=39.21;SOR=1.641;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	107198866	.	TTGGCCCCA	GTGGCCCCA,GTGGCCCCG	634	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=18;MQ=59.08;NF=39,27;NR=16,11;PP=155,634;QD=3.45038568268;SC=CCGCCCCCTGTTGGCCCCACG;SbPval=0.54;Source=Platypus;TC=55;TCF=39;TCR=16;TR=55,38;WE=107198882;WS=107198856;set=Platypus	GT:AF:DP	0/1:1.00:55
chr14	107198874	rs2301536	A	G	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-0.862;QD=15.95;ReadPosRankSum=-0.573;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:23,60:0.72:83
chr14	107198901	rs2301535	C	T	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:50,105:0.68:155
chr14	107211211	rs2073668	G	A	11598.77	.	AC=1;AF=0.500;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	0/1:204,510:0.71:714
chr14	107283150	rs35227799	G	T	3707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-1.466;QD=27.46;ReadPosRankSum=0.475;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:40,95:0.70:135
chr14	107283156	rs10133664	A	G	3666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-1.446;QD=29.57;ReadPosRankSum=0.498;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:36,88:0.71:124
chr14	107283160	rs10133737	C	T	3670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-1.655;QD=28.68;ReadPosRankSum=-0.108;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:35,93:0.73:128
chr15	20170150	rs10431885	C	T	10407.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr15	20229877	rs367637269	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.82;MQRankSum=1.602;QD=16.34;ReadPosRankSum=-0.852;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	20279438	rs55830676	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:167,111:0.40:278
chr15	20279469	.	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DP=246;set=Intersection	GT:AD:AF:DP	0/1:161,85:0.35:246
chr15	20279507	rs200188568	G	A	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.500;MQ=50.91;MQRankSum=-1.365;QD=4.05;ReadPosRankSum=0.781;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:168,65:0.28:233
chr15	20433755	rs4114043	G	A	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr15	20444637	rs200452405	G	A	3704.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:505,214:0.30:719
chr15	20444794	rs2722084	C	T	4661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.213;ClippingRankSum=0.000;DB;DP=1112;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-16.586;QD=4.25;ReadPosRankSum=-3.575;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:795,303:0.28:1098
chr15	20445993	rs116783966	C	T	3358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.448;QD=4.51;ReadPosRankSum=0.655;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:527,217:0.29:744
chr15	20446043	rs1823751	T	A	13543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.886;ClippingRankSum=0.000;DB;DP=968;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.874;QD=14.09;ReadPosRankSum=0.105;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:320,641:0.67:961
chr15	20447987	rs8024775	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr15	20448077	rs3963874	T	C	9951.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.80;QD=23.69;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr15	20448164	rs55697731	T	C	2602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=1017;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=51.29;MQRankSum=-4.135;QD=2.56;ReadPosRankSum=-0.389;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:792,225:0.22:1017
chr15	20450100	.	G	A	2120.77	.	AC=1;AF=0.500;AN=2;DP=357;set=Intersection	GT:AD:AF:DP	0/1:227,121:0.35:348
chr15	20450242	rs2444187	G	C	18584.77	.	AC=1;AF=0.500;AN=2;DB;DP=1447;set=Intersection	GT:AD:AF:DP	0/1:532,902:0.63:1434
chr15	20453825	rs7167849	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-4.190;QD=0.99;ReadPosRankSum=2.346;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr15	20453896	rs2601517	G	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.044;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-9.494;QD=1.59;ReadPosRankSum=-0.263;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:95,14:0.13:109
chr15	20453992	rs4931912	T	C	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=5.652;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=-2.742;QD=3.64;ReadPosRankSum=-3.546;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:155,54:0.26:209
chr15	20454025	rs4931913	A	G	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:152,82:0.35:234
chr15	20454042	rs7168242	A	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-1.978;QD=1.69;ReadPosRankSum=5.359;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:187,44:0.19:231
chr15	20454162	rs4931914	C	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr15	20456517	rs12593833	T	C	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr15	20456640	rs8041606	A	G	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:76,136:0.64:212
chr15	20456665	rs8026258	T	A	6115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-10.957;QD=25.59;ReadPosRankSum=1.629;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:88,151:0.63:239
chr15	20456673	rs8033709	C	G	6572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-11.446;QD=26.08;ReadPosRankSum=1.172;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:93,159:0.63:252
chr15	20456677	rs8037872	G	A	6640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-11.040;QD=26.25;ReadPosRankSum=0.162;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:90,163:0.64:253
chr15	20456682	rs58201907	G	C	1757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=-6.420;QD=6.53;ReadPosRankSum=-0.685;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:169,100:0.37:269
chr15	20456740	rs2954579	A	G	5329.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:130,256:0.66:386
chr15	20456787	rs60265308	C	T	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:239,125:0.34:364
chr15	20457155	rs11856094	A	C	2299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-9.465;QD=10.60;ReadPosRankSum=0.705;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:150,67:0.31:217
chr15	20457155	.	ACC	CCT	1602	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=3;HapScore=1;MGOF=6;MMLQ=27;MQ=54.09;NF=34;NR=20;PP=1602;QD=30.6568124974;SC=GCCAGCATTTACCGCCCACTC;SbPval=0.44;Source=Platypus;TC=137;TCF=89;TCR=48;TR=54;WE=20457165;WS=20457154;set=Platypus	GT:AD:AF:DP	0/1:83,54:0.39:137
chr15	20457157	rs11854770	C	T	2299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-9.466;QD=10.31;ReadPosRankSum=1.036;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:156,67:0.30:223
chr15	20457291	rs6599891	T	C	13442.77	.	AC=1;AF=0.500;AN=2;DB;DP=1081;set=Intersection	GT:AD:AF:DP	0/1:436,642:0.60:1078
chr15	20457319	rs8038741	C	A	14473.77	.	AC=1;AF=0.500;AN=2;DB;DP=1217;set=Intersection	GT:AD:AF:DP	0/1:509,705:0.58:1214
chr15	20462585	rs3901622	A	G	5523.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:123,260:0.68:383
chr15	20462690	rs6422224	T	G	9332.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:244,445:0.65:689
chr15	20462792	rs62009635	T	G	695.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=-0.207;QD=5.80;ReadPosRankSum=0.830;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:81,39:0.33:120
chr15	20462793	rs77195941	ATTT	A	2883.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.990;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.540;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=2.068;QD=25.08;ReadPosRankSum=1.871;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:42,73:0.63:115
chr15	20462828	rs8039793	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr15	20464736	rs112424577	C	CA	849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=3.534;QD=3.65;ReadPosRankSum=-0.206;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:149,84:0.36:233
chr15	20464811	rs4983664	C	T	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=1.983;QD=1.94;ReadPosRankSum=0.237;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:236,58:0.20:294
chr15	20464860	rs7177447	G	T	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-0.730;QD=5.29;ReadPosRankSum=-1.714;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:91,44:0.33:135
chr15	20465014	rs62009640	T	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr15	20465103	rs6599901	A	C	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,68:0.46:147
chr15	20465167	rs10794632	A	T	6515.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:93,166:0.64:259
chr15	20465182	rs10794633	T	A	6557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.923;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-3.470;QD=25.92;ReadPosRankSum=2.705;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:87,166:0.66:253
chr15	20465246	rs8038116	G	A	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:41,114:0.74:155
chr15	20466348	rs11248734	T	C	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.717;QD=5.60;ReadPosRankSum=-0.838;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:105,52:0.33:157
chr15	20466352	rs4983837	T	C	3465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.713;QD=19.92;ReadPosRankSum=0.766;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:60,114:0.66:174
chr15	20466516	rs4983836	C	T	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.86;QD=26.63;SOR=1.273;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	20466546	rs4931936	C	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=11.084;MLEAC=1;MLEAF=0.500;MQ=47.23;MQRankSum=-0.263;QD=5.07;ReadPosRankSum=-0.354;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr15	20466604	rs4983834	A	G	319.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.78;MQRankSum=-1.177;QD=26.65;ReadPosRankSum=-0.649;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr15	20467075	rs60364561	C	T	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:319,134:0.30:453
chr15	20467100	rs4983661	A	G	10363.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:221,384:0.63:605
chr15	20467242	rs59808209	C	T	1752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=55.24;MQRankSum=-0.491;QD=6.33;ReadPosRankSum=0.045;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:179,98:0.35:277
chr15	20468050	rs4983831	A	G	3448.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:88,155:0.64:243
chr15	20476942	rs4983659	C	T	5959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=1099;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.551;QD=5.44;ReadPosRankSum=-1.331;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:750,346:0.32:1096
chr15	20477005	rs4248783	G	C	17511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=3413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.220;QD=5.15;ReadPosRankSum=3.144;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:2331,1067:0.31:3398
chr15	20477090	rs4931940	T	C	13457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=2870;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.822;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:1982,873:0.31:2855
chr15	20481817	rs61468854	CA	C	378.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr15	20481882	rs11248739	G	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:112,50:0.31:162
chr15	20482021	rs28602347	C	G	6050.77	.	AC=1;AF=0.500;AN=2;DB;DP=892;set=Intersection	GT:AD:AF:DP	0/1:551,336:0.38:887
chr15	20482083	rs28576026	G	A	5331.77	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:559,311:0.36:870
chr15	20482115	rs28702675	A	G	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:429,200:0.32:629
chr15	20482142	rs60748331	A	C	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:330,124:0.27:454
chr15	20488870	rs299671	G	A	2920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=973;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-0.232;QD=3.02;ReadPosRankSum=-0.987;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:740,227:0.23:967
chr15	20613928	rs373703433	G	A	4293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-0.209;QD=6.02;ReadPosRankSum=0.385;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:455,258:0.36:713
chr15	20614036	rs11454064	A	AT	864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=3.271;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.367;QD=3.39;ReadPosRankSum=-0.526;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:188,67:0.26:255
chr15	20874846	rs7497024	G	A	10860.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:261,512:0.66:773
chr15	20874897	rs7497658	A	G	18413.77	.	AC=1;AF=0.500;AN=2;DB;DP=1204;set=Intersection	GT:AD:AF:DP	0/1:329,868:0.73:1197
chr15	20875055	rs7496378	C	G	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:61,98:0.62:159
chr15	20875100	rs7497715	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr15	20875126	rs7497743	A	G	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=8.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=0.051;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:10,39:0.80:49
chr15	20876515	rs6422240	A	G	15046.77	.	AC=1;AF=0.500;AN=2;DB;DP=976;set=Intersection	GT:AD:AF:DP	0/1:273,701:0.72:974
chr15	21145503	rs74912473	G	T	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	22156674	rs138833999	C	A	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	22318824	rs35131467	AC	A	751.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	22318894	.	A	G	3844.77	.	AC=2;AF=1.00;AN=2;DP=172;set=Intersection	GT:AD:AF:DP	1/1:10,162:0.94:172
chr15	22318963	rs1429506	A	T	9665.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr15	22319380	rs143307154	C	A	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:8,145:0.95:153
chr15	22319483	rs995427	G	A	12293.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.56;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr15	22332751	rs930109	T	C	11452.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.73;QD=25.91;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr15	22344871	rs28571003	A	G	14612.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.07;QD=43.11;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr15	22344879	rs1366870	C	G	14169.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.65;QD=45.13;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr15	22344951	rs1366871	T	C	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.08;QD=31.52;SOR=3.804;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	22345038	rs1429471	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.57;QD=30.69;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	22345134	rs13380116	C	G	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.89;QD=24.85;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr15	22368862	rs1835183	G	A	22470.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=27.37;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,821:1.00:821
chr15	22368905	rs1835182	G	A	27565.77	.	AC=2;AF=1.00;AN=2;DB;DP=1053;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=26.45;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,1042:1.00:1042
chr15	22369248	rs491208	T	C	16457.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:1,601:1.00:602
chr15	22369426	rs4087943	G	A	12587.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=25.85;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,487:1.00:487
chr15	22382739	rs2671839	A	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	22383066	rs559754	A	G	7646.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr15	22383189	rs1820851	G	A	9063.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr15	22383482	rs3841636	GA	G	2321.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.40;QD=38.70;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	22413700	rs267612	A	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.33;QD=30.32;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	22413825	rs267613	C	T	12835.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.37;QD=25.62;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr15	22414391	rs200623814	G	A	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:3,119:0.98:122
chr15	22414393	rs200221521	C	CAAA	2421.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:14,76:0.84:90
chr15	22440816	rs4505267	A	G	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:22,328:0.94:350
chr15	22448436	rs62007810	G	A	19324.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=860;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.83;MQRankSum=1.043;QD=22.68;ReadPosRankSum=1.161;SOR=0.671;set=HC	GT:AD:AF:DP	1/1:47,805:0.94:852
chr15	22466126	rs1985064	A	C	21176.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DB;DP=893;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;MQRankSum=-0.637;QD=24.15;ReadPosRankSum=-1.231;SOR=0.694;set=HC	GT:AD:AF:DP	1/1:31,846:0.96:877
chr15	22483016	rs367561616	T	G	40384.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.296;QD=41.38;ReadPosRankSum=2.529;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:42,934:0.96:976
chr15	22483018	rs371443337	A	G	21516.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=975;ExcessHet=3.0103;FS=1.326;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.318;QD=22.51;ReadPosRankSum=3.050;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:47,909:0.95:956
chr15	22845933	.	C	T	1447.77	.	AC=2;AF=1.00;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	1/1:3,57:0.95:60
chr15	22869804	rs2251602	A	G	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:6,104:0.95:110
chr15	22926229	rs2289824	G	A	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	22926307	rs7403459	A	G	8321.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr15	22928537	rs79791617	G	C	2131.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:5,88:0.95:93
chr15	22929905	rs2305094	CA	GG	6345.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;JOINED;set=Intersection	GT:AD:AF:DP	0/1:10,154:0.94:164
chr15	22933510	rs369138050	TA	T	589.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	22933511	.	A	T	610	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=20;HapScore=1;MGOF=49;MMLQ=27;MQ=59.81;NF=3;NR=15;PP=610;QD=35.8206229193;SC=TTTTTTTTTTAAATGTGGCAC;SbPval=0.48;Source=Platypus;TC=21;TCF=3;TCR=18;TR=18;WE=22933519;WS=22933501;set=Platypus	GT:AD:AF:DP	1/1:3,18:0.86:21
chr15	22933528	rs2084063	G	A	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	22933691	rs1109036	G	A	9165.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:17,371:0.96:388
chr15	22939192	rs11633474	G	A	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:10,179:0.95:189
chr15	22940670	rs3751566	C	T	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:5,118:0.96:123
chr15	22945314	rs8029108	C	T	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	22955013	rs2289816	T	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	22955307	rs3217548	AC	A	2090.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr15	22969232	rs7170637	G	A	18628.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.03;ReadPosRankSum=1.740;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:38,771:0.95:809
chr15	22999940	rs11307802	TG	T	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	23000272	rs999842	A	G	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr15	23021113	rs7170784	G	A	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr15	23060820	rs139372534	C	T	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:26,323:0.93:349
chr15	23138992	rs202076313	G	A	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	23181922	rs1994761	T	C	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=6.446;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=5.845;QD=1.60;ReadPosRankSum=6.721;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:291,68:0.19:359
chr15	23182267	rs12050782	G	A	6628.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.687;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=4.639;MLEAC=2;MLEAF=1.000;MQ=57.39;MQRankSum=10.723;QD=23.67;ReadPosRankSum=5.003;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:20,260:0.93:280
chr15	23200698	rs58552405	A	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.73;QD=25.73;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	23259270	rs200991698	A	G	1484.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.435;MLEAC=2;MLEAF=1.000;MQ=46.68;MQRankSum=-3.567;QD=20.62;ReadPosRankSum=0.767;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:8,64:0.89:72
chr15	23685004	rs34879341	G	GCAT	20239.73	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=44.68;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr15	23685517	rs372380699	C	T	6580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.764;ClippingRankSum=0.000;DB;DP=1218;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-2.158;QD=5.44;ReadPosRankSum=6.888;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:805,404:0.33:1209
chr15	23685541	rs375981990	CT	C	52915.73	.	AC=2;AF=1.00;AN=2;DB;DP=1350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.14;QD=39.82;SOR=1.180;set=HC	GT:AD:AF:DP	1/1:0,1329:1.00:1329
chr15	23685583	rs368496365	T	C	9928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.296;ClippingRankSum=0.000;DB;DP=1282;ExcessHet=3.0103;FS=2.804;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-1.826;QD=7.81;ReadPosRankSum=-11.957;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:910,361:0.28:1271
chr15	23685604	.	TC	T	8089.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.544;ClippingRankSum=0.000;DP=1093;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=0.408;QD=7.50;ReadPosRankSum=-15.711;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:813,266:0.25:1079
chr15	23685606	.	TCTTCCTGCTCCCACATCTTCTCCTCCTGCTCCCGCATCTTC	T	7841.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.947;ClippingRankSum=0.000;DP=1112;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=0.296;QD=7.15;ReadPosRankSum=-14.986;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:837,260:0.24:1097
chr15	23685639	rs374969803	C	T	9660.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.464;ClippingRankSum=0.000;DB;DP=710;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-1.644;QD=13.82;ReadPosRankSum=8.957;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:263,436:0.62:699
chr15	23685895	rs111853398	C	T	12418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.183;ClippingRankSum=0.000;DB;DP=1562;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-11.711;QD=8.00;ReadPosRankSum=-1.074;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:842,711:0.46:1553
chr15	23685922	.	C	CCCGCATCTTCTCCTCCTGCTT	12620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.199;ClippingRankSum=0.000;DP=1753;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-8.358;QD=9.11;ReadPosRankSum=5.344;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:782,604:0.44:1386
chr15	23686010	.	T	TCTC	2149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DP=1546;ExcessHet=3.0103;FS=1.597;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-16.123;QD=1.77;ReadPosRankSum=10.542;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:1026,187:0.15:1213
chr15	23686019	.	G	C	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DP=1511;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-16.405;QD=1.62;ReadPosRankSum=5.764;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:1057,186:0.15:1243
chr15	23686031	rs75983100	T	C	2436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DB;DP=1517;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-17.280;QD=1.94;ReadPosRankSum=-2.522;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:1061,195:0.16:1256
chr15	23686045	.	A	ATCTTCTCCTCCTGGCCCCACATCT	11620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DP=1373;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-20.022;QD=8.63;ReadPosRankSum=-7.711;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:1046,301:0.22:1347
chr15	23686062	rs202194865	T	C	6550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.612;ClippingRankSum=0.000;DB;DP=1271;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-23.793;QD=5.19;ReadPosRankSum=-5.070;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:1042,221:0.17:1263
chr15	23686067	.	TCTC	T	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DP=1332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-27.845;QD=0.07;ReadPosRankSum=-0.178;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:1230,93:0.07:1323
chr15	23686088	.	TCTC	T	2670.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.102;ClippingRankSum=0.000;DP=1370;ExcessHet=3.0103;FS=3.025;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-8.439;QD=1.96;ReadPosRankSum=2.049;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:1208,153:0.11:1361
chr15	23686113	rs68177477	C	G	2774.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.571;ClippingRankSum=0.000;DB;DP=1404;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-16.346;QD=2.08;ReadPosRankSum=-3.328;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:1181,151:0.11:1332
chr15	23686598	rs35708006	T	C	11323.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr15	23686673	rs59122400	G	A	11616.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr15	23686914	rs57504140	T	A	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	23686924	rs58446506	T	C	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.82;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	23687812	rs2344891	T	G	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr15	23687818	rs72495057	CT	C	1388.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.917;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.577;QD=14.16;ReadPosRankSum=-0.289;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:13,85:0.87:98
chr15	23688944	rs4778531	A	G	9173.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr15	23689510	rs12902150	C	G	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=25.42;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr15	23690359	rs2344894	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.15;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	23889033	rs9785	G	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr15	25219512	rs705	T	C	9475.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.955;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.75;ReadPosRankSum=-0.962;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:16,383:0.96:399
chr15	25307562	rs7402542	A	G	19153.77	.	AC=2;AF=1.00;AN=2;DB;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=25.30;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,757:1.00:757
chr15	25310440	rs6576402	A	G	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	25321029	rs4906699	C	T	5342.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:13,226:0.95:239
chr15	25324141	rs4344720	C	T	686.41	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:3,27:0.90:30
chr15	25328715	rs3803326	T	C	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr15	25330550	rs3803328	T	A	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:14,237:0.94:251
chr15	25332998	rs3825775	C	T	11409.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:27,462:0.94:489
chr15	25333084	.	A	G	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=0.294;QD=7.76;ReadPosRankSum=-0.303;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr15	25415693	rs2739837	T	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	25415759	rs2714734	G	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	25415809	rs2739838	C	T	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	25415825	rs1883009	C	T	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr15	25434690	rs72546349	T	G	8672.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:19,361:0.95:380
chr15	25434755	rs72486633	A	T	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:4,173:0.98:177
chr15	25434817	rs2714770	T	C	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:3,42:0.93:45
chr15	25438493	rs7172888	A	G	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:14,335:0.96:349
chr15	25652101	rs8032479	C	G	150.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	25925094	rs3816800	C	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:4,75:0.95:79
chr15	25925195	rs3736186	T	C	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	25926186	rs2076743	G	A	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	25926198	rs2076742	C	G	4617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.316;QD=38.48;ReadPosRankSum=-0.822;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:9,111:0.93:120
chr15	25926204	rs2076741	C	G	4633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.339;QD=37.07;ReadPosRankSum=-0.711;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:11,114:0.91:125
chr15	25926325	rs35849027	T	TAAC	1820.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=43.35;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	25933094	rs3743438	C	T	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:3,56:0.95:59
chr15	25947274	rs753898	G	C	1942.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.33;ReadPosRankSum=0.217;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:6,81:0.93:87
chr15	25953091	rs28451772	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:3,55:0.95:58
chr15	25953442	rs2066704	C	T	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:16,206:0.93:222
chr15	25961964	rs10873607	A	G	12107.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr15	25962058	rs2066703	G	A	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:17,224:0.93:241
chr15	25963599	rs8024374	A	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	25967085	rs1564828	T	C	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	25969090	rs17116056	G	T	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:12,203:0.94:215
chr15	25972202	rs10670418	C	CAA	872.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.980;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=22.97;ReadPosRankSum=0.958;SOR=0.174;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr15	25981190	rs7173593	A	G	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	25981367	rs7177724	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	26026139	rs8038726	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	26260450	rs12440137	C	T	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	26260477	rs12437822	T	C	5634.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	26806064	rs3751582	T	C	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr15	26887814	rs754186	A	G	16743.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=2.910;SOR=0.580;set=HC	GT:AD:AF:DP	1/1:3,655:1.00:658
chr15	26887879	rs754185	T	C	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr15	27017536	rs8179186	G	A	15751.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:27,634:0.96:661
chr15	27018187	.	TGCCGCC	T,TGCC	3290.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.04;QD=38.26;SOR=0.740;set=HC	GT:AD:AF:DP	1/2:0,11,75:0.13,0.87:86
chr15	27018797	rs20318	G	A	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:5,143:0.97:148
chr15	27018937	rs20317	G	C	9263.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.87;ReadPosRankSum=0.978;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:19,386:0.95:405
chr15	27019040	rs4906901	C	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.23;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	27061564	.	GA	G	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-2.174;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr15	27182212	rs140681	G	A	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:6,87:0.94:93
chr15	27182357	rs140682	T	C	15629.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.68;ReadPosRankSum=0.194;SOR=0.663;set=HC	GT:AD:AF:DP	1/1:37,652:0.95:689
chr15	27188353	rs140684	C	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.899;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:71,9:0.11:80
chr15	27516740	rs76888516	GAGTC	G	8801.73	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:14,212:0.94:226
chr15	27726080	rs56174531	A	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	27772676	rs140679	C	T	9241.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr15	27772892	rs2303879	G	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	27890300	rs1871016	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.91;ReadPosRankSum=-1.821;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr15	27890491	rs1871017	G	T	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	27890571	rs5811500	GT	G	2473.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr15	27890589	rs1871018	A	G	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	28096453	rs8025804	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	28096538	rs1800419	A	G	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	28116173	rs12594397	C	T	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	28116275	rs7175046	G	C	11810.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=-0.938;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:2,456:1.00:458
chr15	28171147	rs2594928	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	28195534	rs11632387	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	28196821	rs7173419	T	C	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	28200408	rs7170989	T	C	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	28211758	rs4778218	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	28211921	rs1800411	G	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	28228644	rs12910433	G	A	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr15	28230097	rs1900758	C	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	28231793	rs10852218	T	C	6791.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr15	28235773	rs1800404	C	T	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr15	28356859	rs1129038	C	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	28357230	rs4778245	T	C	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	28359744	rs7495441	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	28360081	rs7497014	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	28360888	rs5811542	C	CT	1399.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	28361764	rs4778247	C	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	28362459	rs7495875	G	A	6628.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr15	28375872	rs6416603	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	28377196	rs10627923	C	CCT	3679.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	28377772	rs8025035	C	T	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	28378122	rs4778141	T	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	28414665	rs7494786	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	28441817	rs2525936	G	T	393.78	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr15	28502279	rs11631797	A	G	9228.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr15	28517258	.	C	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-1.876;QD=17.43;ReadPosRankSum=-1.876;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr15	28517261	rs374453464	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-1.812;QD=14.52;ReadPosRankSum=-1.418;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	28517282	.	TG	GC	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.388;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=8.923;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-1.693;QD=19.30;ReadPosRankSum=0.000;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr15	28517287	.	T	A	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.094;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-1.753;QD=19.86;ReadPosRankSum=0.458;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr15	28517291	.	T	C	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.910;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=5.391;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-1.749;QD=18.63;ReadPosRankSum=0.764;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr15	28517295	.	A	G	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.986;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=5.297;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-1.798;QD=17.64;ReadPosRankSum=1.210;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr15	28517303	.	T	G	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=6.529;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-2.046;QD=15.17;ReadPosRankSum=2.448;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:26,19:0.42:45
chr15	28517305	.	T	A	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=6.285;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-2.161;QD=15.54;ReadPosRankSum=2.656;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr15	28517310	rs199951842	G	A	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-1.919;QD=15.03;ReadPosRankSum=0.912;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:29,24:0.45:53
chr15	28517436	rs75181529	T	C	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:151,110:0.42:261
chr15	28517492	rs77399744	C	A	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:142,72:0.34:214
chr15	28517539	rs80340439	G	A	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-0.241;QD=8.11;ReadPosRankSum=-3.856;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:121,43:0.26:164
chr15	28517546	rs79819039	G	C	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-0.250;QD=8.55;ReadPosRankSum=-5.309;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:106,38:0.26:144
chr15	28517555	rs112104080	T	TC	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.966;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=8.157;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-0.807;QD=1.89;ReadPosRankSum=-3.803;SOR=1.905;set=HC	GT:AD:AF:DP	0/1:90,15:0.14:105
chr15	28517946	rs372909483	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=54.08;MQRankSum=-2.100;QD=4.35;ReadPosRankSum=0.619;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr15	28518102	rs75893088	C	T	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-9.516;QD=7.27;ReadPosRankSum=-1.947;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr15	28518112	rs200859595	C	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-9.643;QD=6.32;ReadPosRankSum=-1.386;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:84,23:0.21:107
chr15	28518114	.	TC	T	669.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-10.161;QD=6.32;ReadPosRankSum=-0.774;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:85,21:0.20:106
chr15	28518126	.	G	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-9.681;QD=4.22;ReadPosRankSum=-0.509;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:79,17:0.18:96
chr15	28518130	.	G	C	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-9.391;QD=3.95;ReadPosRankSum=0.769;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:77,15:0.16:92
chr15	28518135	.	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-9.283;QD=3.32;ReadPosRankSum=0.959;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:75,13:0.15:88
chr15	28518136	rs201979656	G	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-9.283;QD=3.32;ReadPosRankSum=1.000;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:75,13:0.15:88
chr15	28518153	.	G	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-8.567;QD=2.48;ReadPosRankSum=2.011;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:65,10:0.13:75
chr15	28518162	.	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-8.083;QD=3.09;ReadPosRankSum=1.197;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:57,10:0.15:67
chr15	28518179	rs79399455	A	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-7.083;QD=4.71;ReadPosRankSum=0.093;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr15	28518184	rs75964737	A	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-6.727;QD=4.95;ReadPosRankSum=0.122;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr15	28518217	rs76711552	C	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-5.015;QD=2.95;ReadPosRankSum=-2.630;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr15	28518228	.	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-4.714;QD=3.32;ReadPosRankSum=-2.212;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr15	29008641	rs372586219	GCCCCTCCATGGATCACCGGCA	G	6037.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:9,146:0.94:155
chr15	29008851	rs145357312	C	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=6.186;MLEAC=1;MLEAF=0.500;MQ=45.62;MQRankSum=-4.337;QD=11.91;ReadPosRankSum=-1.423;SOR=1.718;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr15	29009050	rs112804410	A	AC	26510.73	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr15	29009311	rs142374134	A	G	2963.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.27;MQRankSum=-0.545;QD=25.33;ReadPosRankSum=0.732;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:2,115:0.98:117
chr15	29043336	rs11630550	C	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr15	29043486	rs11630596	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:4,45:0.92:49
chr15	29043511	rs1877706	T	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	29052021	rs4036877	A	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	29093527	rs58669327	TG	T	1588.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	29347019	rs8040932	T	C	4791.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=3.125;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.65;ReadPosRankSum=-0.555;SOR=0.404;set=HC	GT:AD:AF:DP	1/1:20,212:0.91:232
chr15	29368221	rs2279498	A	G	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:8,117:0.94:125
chr15	29385149	rs4779760	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	29385204	rs4779761	A	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	29386593	rs8037972	G	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	29399148	rs2306935	G	T	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:5,75:0.94:80
chr15	29415560	rs3751562	G	A	25356.77	.	AC=2;AF=1.00;AN=2;DB;DP=996;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,986:1.00:986
chr15	29415698	rs3751563	A	G	10862.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:2,414:1.00:416
chr15	29416882	rs74007099	C	T	2974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=2.152;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:199,159:0.44:358
chr15	29417099	rs12438521	G	C	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	29418520	rs2256273	C	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	29418573	rs2672680	AT	GC	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	29418745	rs968476	G	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	29428556	rs8023368	C	G	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	29428867	.	G	GTT	53.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	29444130	rs59230279	GC	G	2202.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	29544523	rs11071669	A	C	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr15	29544656	rs4583203	T	C	9012.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr15	29862654	rs111717681	C	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.58;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	30008856	rs7166878	C	A	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	30008889	rs2229518	G	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	30010328	rs72143374	TA	T	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.022;QD=3.18;ReadPosRankSum=0.957;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr15	30011427	rs11073215	C	T	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	30018553	rs4073316	A	T	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr15	30064495	rs1383315	C	T	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	30069920	rs34542662	AT	A	870.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	30070198	rs1904812	A	C	334.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.89;ReadPosRankSum=0.717;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr15	30663407	rs149768281	C	T	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	30664453	rs149526715	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.53;QD=23.62;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	30700159	rs62016504	A	G	4289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=52.53;MQRankSum=-5.808;QD=26.00;ReadPosRankSum=-2.885;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:33,132:0.80:165
chr15	30700168	.	C	CTTG	3556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=5.082;MLEAC=1;MLEAF=0.500;MQ=50.80;MQRankSum=-7.117;QD=28.68;ReadPosRankSum=-0.355;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:32,92:0.74:124
chr15	30700263	rs2564642	T	C	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.42;QD=26.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	30700278	rs62016505	C	T	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.23;QD=27.28;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	31048067	rs116457401	T	C	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr15	31048088	rs61998400	T	C	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr15	31048241	rs11633095	A	G	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:4,92:0.96:96
chr15	31119861	rs3829484	G	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=24.84;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	31129037	rs11070624	G	A	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr15	31217912	rs57426776	A	G	2112.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.74;ReadPosRankSum=2.440;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:5,84:0.94:89
chr15	31220709	.	TTG	T	314.73	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:89,23:0.21:112
chr15	31234064	rs6493352	C	T	7734.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:16,310:0.95:326
chr15	31238712	rs149523068	C	G	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr15	31283136	rs3743231	A	C	14161.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:31,585:0.95:616
chr15	31283844	rs28564430	T	C	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:4,61:0.94:65
chr15	31283867	rs2303407	G	A	579.31	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr15	31318567	rs13380246	C	T	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr15	31320703	rs72712216	C	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	31330280	rs2288242	A	G	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr15	31330313	rs12913672	A	G	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:10,192:0.95:202
chr15	31358584	rs79341478	G	A	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	31362352	rs2241493	C	T	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	31362654	rs17815804	G	A	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	31369123	rs4779816	A	G	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	31369223	rs4779817	C	T	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr15	31453056	rs12906081	T	C	14653.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,570:1.00:570
chr15	31776021	rs2338681	T	C	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.62;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	32322929	rs2292571	G	A	8526.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.69;ReadPosRankSum=-1.555;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:14,346:0.96:360
chr15	32393486	rs201765366	C	CT	1286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.687;QD=9.53;ReadPosRankSum=-1.588;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:44,91:0.67:135
chr15	32393660	rs151204095	A	AAG	931.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr15	32393663	rs28650375	C	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr15	32916715	.	A	G	111.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=27.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	32926076	rs11632524	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	32971934	rs7177843	C	T	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:7,133:0.95:140
chr15	32984196	rs6494593	A	G	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	33010412	rs2293582	G	A	12067.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:21,481:0.96:502
chr15	33010736	rs2293581	G	A	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:13,215:0.94:228
chr15	33096638	.	CGG	C	105.87	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	33096645	.	G	A	114.90	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	33191023	rs173224	A	G	4951.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.318;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.413;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.41;ReadPosRankSum=0.057;SOR=0.404;set=HC	GT:AD:AF:DP	1/1:13,208:0.94:221
chr15	33200804	.	CAAAAA	C	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-1.267;QD=12.70;ReadPosRankSum=-0.026;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr15	33202602	rs3812926	A	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:4,70:0.95:74
chr15	33218472	rs11382878	G	GA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=0.948;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr15	33218589	rs36016183	C	CTCT	219.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	33261232	rs2930131	G	A	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	33446258	rs28377066	G	A	16581.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,643:1.00:643
chr15	33446311	rs28507600	G	C	12715.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,493:1.00:493
chr15	33757840	rs2596163	G	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	33795710	rs2572204	A	G	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	33822969	rs12900227	T	C	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:9,183:0.95:192
chr15	33840414	rs1435100	A	G	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	33840554	rs202073380	GT	G	90.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	33842222	rs1865496	C	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	33855345	rs2304379	G	A	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	33872177	rs674155	C	T	6323.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr15	33873657	rs668570	C	T	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	33876449	rs10431811	G	A	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	33876517	rs2643364	A	G	6999.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr15	33876543	rs624954	C	T	10652.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr15	33893769	rs2437135	C	T	6744.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr15	33893828	rs3829479	C	G	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	33895573	rs75782410	C	T	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:4,115:0.97:119
chr15	33915964	rs35485665	G	GT	1913.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.468;QD=15.43;ReadPosRankSum=3.150;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:19,105:0.85:124
chr15	33916053	rs2229117	G	C	5425.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.265;QD=22.42;ReadPosRankSum=0.087;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:14,228:0.94:242
chr15	33925062	rs3816940	G	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	33925364	rs2291732	G	A	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	33927764	rs1495280	C	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	33928785	rs35203574	A	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:4,53:0.93:57
chr15	33954652	rs4780144	C	T	12814.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:2,488:1.00:490
chr15	33990250	rs1111611	G	A	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	33993320	rs2280419	G	A	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:6,164:0.96:170
chr15	34016274	rs6495228	G	A	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	34021276	rs7498093	T	G	796.78	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chr15	34030865	rs4780171	T	C	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	34060740	rs2278317	C	T	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	34064043	rs1429754	T	C	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	34065658	rs3086242	A	AT	1643.74	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:16,84:0.84:100
chr15	34094048	rs35048413	G	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr15	34094201	rs2115747	C	T	10849.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:21,436:0.95:457
chr15	34099822	rs2879436	G	A	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	34103272	rs4780181	C	G	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	34111876	rs10631080	A	AAAAT	3922.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=39.23;ReadPosRankSum=1.326;SOR=1.478;set=HC	GT:AD:AF:DP	0/1:9,91:0.91:100
chr15	34112825	rs1036005	C	T	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:16,177:0.92:193
chr15	34112865	rs1036006	G	A	8182.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:28,343:0.92:371
chr15	34112906	rs1036007	C	A	7171.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:61,388:0.86:449
chr15	34113054	rs3815965	G	A	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr15	34113454	rs35254800	AT	A	2616.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:6,129:0.96:135
chr15	34113536	rs2288614	A	G	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:10,178:0.95:188
chr15	34115088	rs8032198	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	34118994	rs4041449	C	CAG	6149.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	34129357	rs7182398	C	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	34132875	rs4780184	G	A	1969.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.73;ReadPosRankSum=-1.120;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:4,79:0.95:83
chr15	34133130	rs3764232	A	G	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr15	34135826	rs2303868	G	A	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	34136971	rs7181900	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	34137292	rs12899715	C	G	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	34140735	rs2278314	A	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	34146783	rs2303308	G	A	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr15	34146886	rs713201	T	C	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	34146922	rs713203	C	T	8843.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr15	34151668	rs7180084	G	C	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	34152777	rs2303310	T	A	9904.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr15	34156284	rs11072759	C	G	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	34156312	rs11072760	T	C	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	34168207	.	G	GA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DP=327;ExcessHet=3.0103;FS=3.085;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.342;QD=0.28;ReadPosRankSum=1.452;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:245,52:0.18:297
chr15	34380216	rs377063587	TA	T	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.399;QD=1.56;ReadPosRankSum=-0.505;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:209,71:0.25:280
chr15	34437863	rs4780222	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	34441102	rs6495551	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	34520887	rs71119951	CT	C	41.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=6.021;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=5.19;ReadPosRankSum=-0.319;SOR=2.526;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr15	34521253	rs7167503	A	T	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	34528948	rs4577050	G	A	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr15	34529488	rs35994446	G	GT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=-0.328;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	34537435	rs4371122	C	T	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	34543055	rs10851964	G	A	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	34543298	rs11382535	G	GA	1337.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:10,73:0.88:83
chr15	34547757	rs11421665	G	GA	106.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	34640054	rs150911418	AAAAAAT	A	1158.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	34640218	rs374230	C	T	28341.77	.	AC=2;AF=1.00;AN=2;DB;DP=1081;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,1051:1.00:1051
chr15	34640378	rs430083	T	C	29384.77	.	AC=2;AF=1.00;AN=2;DB;DP=1182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,1141:1.00:1141
chr15	34640959	rs371061	G	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.65;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	34643103	rs347796	A	G	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	34654339	.	TTC	T	1042.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DP=689;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.597;QD=1.55;ReadPosRankSum=1.827;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:575,96:0.14:671
chr15	34656366	rs67950209	GAGA	G	12762.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:1,286:1.00:287
chr15	34782792	rs2655313	C	A	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	35045312	rs651724	T	A	15389.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr15	35083508	rs149246511	TCACACA	T,TCA	2606.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.74;QD=38.33;SOR=2.157;set=HC	GT:AD:AF:DP	1/2:0,31,37:0.46,0.54:68
chr15	35086711	.	T	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=9.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.487;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr15	35149008	rs8035240	C	T	10573.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr15	35155247	.	G	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=2.400;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:72,15:0.17:87
chr15	35168056	rs2290321	C	T	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	35174666	.	T	TAA	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=1.762;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr15	35185808	rs71929696	GCA	G	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=9.168;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.582;QD=4.96;ReadPosRankSum=-0.854;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr15	35185812	rs6495722	A	G	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=17.612;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-1.129;QD=9.61;ReadPosRankSum=1.335;SOR=2.601;set=HC	GT:AD:AF:DP	0/1:22,30:0.58:52
chr15	35185814	rs370012565	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr15	35196492	rs12898639	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	35207397	rs2044920	C	G	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	35230924	rs12594085	A	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=25.07;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	35230934	rs10701045	A	ATAGT	2648.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=44.15;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	35252767	rs11636350	G	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	35256624	rs9920529	C	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	35261649	rs7164169	A	G	25546.77	.	AC=2;AF=1.00;AN=2;DB;DP=999;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,979:1.00:979
chr15	35261952	rs7164070	C	T	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	35834547	rs1020307	T	C	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr15	36218922	rs6495804	T	A	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	36218926	rs62005169	T	A	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	36219181	rs145934061	AAAG	A	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=2.895;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr15	36937405	rs11073191	G	T	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	36937606	rs11073192	A	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	36946153	rs10220771	G	A	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.102;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	36946176	rs62002320	A	G	8697.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:13,347:0.96:360
chr15	36946441	rs10220785	C	T	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	36949952	rs6495863	T	A	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	37110637	rs1194621	T	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=25.26;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	37173379	rs16964235	T	C	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	37173945	rs4451907	A	G	219.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	37187197	rs61146116	A	AT	40.25	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	37242440	.	G	GA	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=1.44;ReadPosRankSum=2.580;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:93,29:0.24:122
chr15	37387971	rs3751544	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr15	38230565	rs59125264	TG	T	1199.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=35.29;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	38233869	rs2937991	T	C	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	38258772	rs2959336	A	C	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	38590722	rs8040553	T	G	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	38590749	rs77635204	GAGAA	G	2257.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=-0.157;QD=39.61;ReadPosRankSum=0.412;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:3,54:0.95:57
chr15	38590771	rs8036280	A	G	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	38590854	rs8034630	G	A	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	38614525	rs7182445	G	A	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr15	38617113	rs1879938	C	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	38617113	.	CTC	TTG	568	.	AC=2;AF=1.00;AN=2;BRF=0.47;FR=1.0000;HP=1;HapScore=1;MGOF=4;MMLQ=26;MQ=60.0;NF=4;NR=11;PP=568;QD=41.4311916575;SC=TTCTAAGACACTCTATTTGTC;SbPval=0.71;Source=Platypus;TC=16;TCF=5;TCR=11;TR=15;WE=38617123;WS=38617103;set=Platypus	GT:AD:AF:DP	1/1:1,15:0.94:16
chr15	38617115	rs1879937	C	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	38631840	rs7163339	T	C	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	38631930	rs7180446	C	A	5742.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.606;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.33;ReadPosRankSum=-0.572;SOR=0.241;set=HC	GT:AD:AF:DP	1/1:1,235:1.00:236
chr15	38632148	rs7181472	A	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	38641773	rs61670754	G	GTT	1798.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	38641774	rs34352434	A	AAAT	1798.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.34;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	38641777	rs59928364	G	GTA	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	38643574	rs3751526	T	C	10397.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr15	38762701	rs7162389	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	38776330	rs61409403	T	G	155.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	38798246	rs4465567	T	C	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:3,76:0.96:79
chr15	38804020	rs11413668	T	TA	1261.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	38804104	rs6495977	C	A	137.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	38990769	rs7172816	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr15	40019053	rs370304453	AAC	A	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-0.647;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr15	40030440	rs1906163	G	A	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	40030457	rs34646792	GA	G	579.74	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:5,36:0.88:41
chr15	40031715	rs8033687	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	40056219	rs34937456	G	A	4327.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.07;ReadPosRankSum=-1.377;SOR=0.460;set=HC	GT:AD:AF:DP	1/1:5,103:0.95:108
chr15	40056223	rs62004778	T	C	4327.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.83;ReadPosRankSum=-1.096;SOR=0.460;set=HC	GT:AD:AF:DP	1/1:5,101:0.95:106
chr15	40056232	rs199579137	A	AT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-1.853;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr15	40062825	rs1565560	C	A	2107.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.347;MLEAC=2;MLEAF=1.000;MQ=60.88;MQRankSum=0.864;QD=19.70;ReadPosRankSum=-0.844;SOR=1.420;set=HC	GT:AD:AF:DP	1/1:10,97:0.91:107
chr15	40062838	rs7179838	G	A	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:7,98:0.93:105
chr15	40062855	rs1565561	C	T	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:3,78:0.96:81
chr15	40062884	rs7180846	T	C	730.80	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr15	40226495	rs566792	T	C	17225.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,663:1.00:663
chr15	40248122	rs8030025	G	A	145.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	40254155	rs510949	A	G	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	40259519	rs33911018	C	CT	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=0.487;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr15	40265799	rs2307105	A	G	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr15	40269052	rs34298786	G	A	11121.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:23,465:0.95:488
chr15	40269102	rs149792847	A	AT	4465.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.912;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.23;ReadPosRankSum=-0.394;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:23,222:0.91:245
chr15	40270214	rs7174071	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	40282625	rs4144472	T	C	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	40284523	rs7178419	C	T	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	40284802	rs11070241	C	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	40285120	rs11633992	A	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	40291140	rs2412457	C	T	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	40293036	rs72248603	AAAT	A	1029.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:3,27:0.90:30
chr15	40300092	rs2279581	T	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	40300443	rs2279579	T	G	769.78	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:3,30:0.91:33
chr15	40313083	rs12916520	G	T	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	40313141	rs3207297	C	T	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr15	40314942	.	C	CT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=1.112;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr15	40314967	rs8030856	C	G	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	40322552	rs2250402	G	T	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	40324837	rs2291621	C	T	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr15	40328575	rs7535	G	C	18110.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:0,694:1.00:694
chr15	40328665	rs8208	G	A	8606.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr15	40329033	rs2291619	A	G	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	40329480	rs3215044	G	GAA	1361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-0.861;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:23,79:0.77:102
chr15	40330564	rs7321	C	T	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	40330629	rs8041057	C	T	8658.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr15	40330693	rs937215	C	T	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	40453307	rs2277559	A	G	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:5,126:0.96:131
chr15	40453497	rs2277560	G	A	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr15	40457129	rs3214012	A	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	40477831	rs1801376	G	A	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:8,175:0.96:183
chr15	40491952	rs2172742	A	G	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr15	40494952	rs2412482	A	T	2234.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.39;ReadPosRankSum=1.471;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,64:0.93:69
chr15	40494960	rs12898804	A	C	1985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.19;ReadPosRankSum=3.629;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:4,48:0.92:52
chr15	40500986	rs11630664	C	T	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.263;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	40544568	rs200940821	G	A	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:10,214:0.96:224
chr15	40565705	rs936214	G	A	15181.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=1.460;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.76;ReadPosRankSum=-0.591;SOR=0.576;set=HC	GT:AD:AF:DP	1/1:25,614:0.96:639
chr15	40573675	rs12440450	G	T	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	40573716	rs4924446	A	G	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	40582128	.	AAGAGAGAG	A,AAG	1939.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=2.034;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.99;MQRankSum=-0.200;QD=25.19;ReadPosRankSum=-0.752;SOR=0.321;set=HC	GT:AD:AF:DP	1/2:10,29,38:0.38,0.49:77
chr15	40582169	rs8036867	A	T	3256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=3.827;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.928;QD=15.36;ReadPosRankSum=4.330;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:53,159:0.75:212
chr15	40583093	rs2412506	A	G	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.73;SOR=1.381;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	40583107	rs117658605	T	G	2878.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.60;ReadPosRankSum=0.864;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:4,113:0.97:117
chr15	40583458	rs936209	A	G	8656.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr15	40583876	rs9972418	T	G	13794.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr15	40584164	rs2290550	C	A	8424.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:6,316:0.98:322
chr15	40589830	rs2305649	G	A	11147.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:10,446:0.98:456
chr15	40590134	rs2229690	G	A	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:7,212:0.97:219
chr15	40590265	rs2305648	C	G	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:13,179:0.93:192
chr15	40593939	rs2305647	C	T	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	40595414	rs1869902	G	C	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr15	40595627	rs1869901	G	A	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	40632302	rs12440659	G	C	14302.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,557:1.00:557
chr15	40632368	rs58452154	T	G	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:7,184:0.96:191
chr15	40633220	rs148790145	ACT	A	2753.92	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:5,69:0.93:74
chr15	40703609	rs4924466	A	G	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	40751333	.	C	T	8735.77	.	AC=2;AF=1.00;AN=2;DP=385;set=Intersection	GT:AD:AF:DP	1/1:16,357:0.96:373
chr15	40820805	rs7164166	A	G	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	40824393	.	C	G	4743.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.84;ReadPosRankSum=-1.402;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:6,193:0.97:199
chr15	40824710	rs8029208	T	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	40849680	rs8029384	C	G	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	40855210	rs10152546	T	A	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	40856989	rs3803354	C	T	23759.77	.	AC=2;AF=1.00;AN=2;DB;DP=920;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,909:1.00:909
chr15	40862064	rs1058734	C	T	13600.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr15	40898643	rs7177192	G	C	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	40903684	rs12911738	A	G	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	40907698	rs11427985	T	TG	1117.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	40913840	rs2412541	G	T	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	40915190	rs8040502	A	G	6263.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.78;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	40916237	rs17747633	A	G	11064.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr15	40937727	rs6492959	C	T	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	40939448	rs8041095	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	40998305	rs45592734	T	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr15	41021570	rs5812170	CAA	C	186.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=11.67;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr15	41030579	rs34355108	C	CA	1663.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:3,81:0.96:84
chr15	41030865	rs2304582	C	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:3,47:0.94:50
chr15	41036448	rs4923884	G	A	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,214:1.00:215
chr15	41046883	rs11558807	C	A	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:11,233:0.95:244
chr15	41047024	rs7169010	G	A	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:10,77:0.89:87
chr15	41060070	.	T	TA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.059;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr15	41063244	rs1866170	C	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr15	41065890	rs2289219	C	T	7457.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:8,300:0.97:308
chr15	41099899	rs142730574	T	TGGGGC	4676.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:3,109:0.97:112
chr15	41101124	rs3743033	C	G	485.94	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr15	41101145	rs3743034	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr15	41104743	.	CA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=4.367;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-2.317;QD=1.05;ReadPosRankSum=0.586;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr15	41104771	rs141515751	GAAAGAAAGAAAGAAAGAA	G	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.23;MQRankSum=-1.594;QD=13.11;ReadPosRankSum=1.647;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr15	41104817	rs35853942	A	G	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:4,154:0.97:158
chr15	41104874	rs17657877	G	C	7574.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:10,304:0.97:314
chr15	41105658	rs3736286	G	A	5887.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.30;ReadPosRankSum=-0.845;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:17,247:0.94:264
chr15	41105926	rs690347	T	G	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:8,186:0.96:194
chr15	41109371	rs12148058	G	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	41146581	rs3736287	T	C	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:9,129:0.93:138
chr15	41148199	rs659232	C	T	19116.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,735:1.00:735
chr15	41149161	rs690458	G	C	18671.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,739:1.00:739
chr15	41165739	rs1814692	A	C	8492.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr15	41193274	rs9806730	T	C	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr15	41193316	rs9806683	C	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	41224124	rs3212278	G	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	41246237	rs3033592	A	ATC	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	41276158	rs11855248	G	A	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	41313064	rs3214068	C	G	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	41315591	rs72527311	A	AAT	3499.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;QD=43.75;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	41339481	rs11070320	C	T	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	41346092	rs2899010	T	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	41347658	rs2306083	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	41350768	.	CGTGTGT	C,CGT	1580.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.807;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.25;ReadPosRankSum=0.341;SOR=1.009;set=HC	GT:AD:AF:DP	1/2:2,9,47:0.16,0.81:58
chr15	41371772	.	C	CA	103.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr15	41373029	rs1983400	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.02;QD=26.82;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	41476101	rs521088	T	C	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	41476465	rs690733	G	A	8933.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:1,344:1.00:345
chr15	41476856	rs111604343	C	CT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=1.196;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:41,23:0.36:64
chr15	41483631	rs11371504	T	TA	3461.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	41483636	rs2412609	C	T	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	41487934	rs28382348	G	C	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr15	41508829	.	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.416;QD=2.02;ReadPosRankSum=0.638;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr15	41509288	rs7173086	T	A	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	41555249	rs7175912	T	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	41570909	rs11630656	T	G	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr15	41605632	rs8032838	G	A	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	41605653	rs8032846	G	C	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	41624397	rs28492932	G	C	17914.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.940;set=HC	GT:AD:AF:DP	1/1:0,693:1.00:693
chr15	41634587	rs7178634	AC	GA	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	41663896	rs13379756	A	C	2409.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.381;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=16.103;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=2.096;SOR=1.907;set=HC	GT:AD:AF:DP	1/1:5,87:0.95:92
chr15	41672384	rs7168431	A	G	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr15	41672441	rs11376196	A	AT	513.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=-0.763;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr15	41689166	rs3204853	C	A	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	41689232	rs1899	C	T	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	41750096	rs11313160	TC	T	930.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	41766966	rs167581	G	A	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	41770639	.	CT	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=1.108;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:87,29:0.25:116
chr15	41772693	rs316607	G	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	41799755	.	C	T	17511.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DP=736;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=-0.261;SOR=0.578;set=HC	GT:AD:AF:DP	1/1:20,705:0.97:725
chr15	41810439	rs932959	G	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr15	41813279	rs3743031	C	T	15144.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.55;ReadPosRankSum=0.858;SOR=0.640;set=HC	GT:AD:AF:DP	1/1:25,618:0.96:643
chr15	41815516	rs8027526	G	C	13172.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr15	41815649	rs2297377	A	G	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:4,165:0.98:169
chr15	41819322	rs2297380	C	T	9020.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:8,349:0.98:357
chr15	41819466	rs35981448	G	A	10995.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:18,445:0.96:463
chr15	41819998	rs11070334	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	41827243	rs7181115	A	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	41827655	rs2297381	C	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	41829230	rs721772	A	G	11121.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,434:1.00:434
chr15	41851709	rs113721358	A	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.72;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	41856543	rs11070339	A	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	41865488	rs2246444	C	T	13144.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr15	42028354	rs2577960	C	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	42054659	rs200820399	G	T	457.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.141;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.89;ReadPosRankSum=1.141;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr15	42109223	rs1197689	T	C	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	42111745	rs56070211	CG	C	8055.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=5.364;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.857;QD=23.76;ReadPosRankSum=1.741;SOR=0.646;set=HC	GT:AD:AF:DP	1/1:24,315:0.93:339
chr15	42114414	rs2303517	C	T	8274.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr15	42115019	rs34055060	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr15	42115426	rs1197688	A	G	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr15	42120437	rs13380315	C	G	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	42127443	rs2241523	G	C	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	42127918	rs11070350	A	G	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	42128855	rs7166139	T	C	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	42129168	rs7165230	A	T	8446.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr15	42129176	rs890504	T	C	8575.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	42129373	rs11547012	C	G	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	42131187	rs373863719	T	C	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:5,141:0.97:146
chr15	42131965	rs57498313	A	G	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	42132200	rs2077543	C	G	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	42140998	rs4078788	C	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	42143533	rs1197665	T	G	11924.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,456:1.00:456
chr15	42144332	rs1197662	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	42144967	.	TG	T	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DP=390;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=0.814;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:309,44:0.12:353
chr15	42145049	rs55978013	C	T	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:6,211:0.97:217
chr15	42147639	rs2305655	A	C	11871.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chr15	42153519	rs2278965	G	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	42160430	rs192068074	C	T	2677.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.12;ReadPosRankSum=0.093;SOR=0.415;set=HC	GT:AD:AF:DP	1/1:3,108:0.97:111
chr15	42211486	rs1704396	A	G	10352.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr15	42235173	rs11631075	G	A	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:13,162:0.93:175
chr15	42287578	rs1668586	G	A	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr15	42289522	rs1704357	C	T	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	42292532	rs1668557	T	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	42297092	rs2598464	G	A	8651.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr15	42298133	rs1704366	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	42302590	rs1668568	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr15	42305769	rs75965569	G	A	1411.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.348;QD=41.52;ReadPosRankSum=1.633;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr15	42305770	rs76383211	C	T	1436.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.348;QD=42.26;ReadPosRankSum=1.633;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr15	42305773	rs62004282	A	G	1436.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.343;QD=41.05;ReadPosRankSum=1.537;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr15	42305852	rs10625152	A	AGAG	4711.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.221;QD=42.07;ReadPosRankSum=0.090;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:3,109:0.97:112
chr15	42305998	rs1668565	T	C	3898.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:10,115:0.92:125
chr15	42306011	.	C	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=3.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.343;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:81,9:0.10:90
chr15	42306015	rs1668564	G	A	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:7,69:0.91:76
chr15	42311454	rs2724935	T	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	42362298	rs12906547	T	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:7,75:0.91:82
chr15	42362821	rs2459692	C	G	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr15	42363769	rs1668589	A	G	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	42364652	rs1668587	G	A	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	42371752	rs4924618	A	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	42373810	rs11635685	G	C	9599.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:17,390:0.96:407
chr15	42374125	rs11403193	C	CT	1029.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.962;QD=5.20;ReadPosRankSum=0.561;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:98,100:0.51:198
chr15	42377744	rs605253	C	G	4379.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr15	42433802	rs2280248	A	G	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr15	42434837	rs1356410	T	C	16997.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr15	42436043	rs681264	G	A	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	42519136	rs1678988	T	C	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	42520760	rs1678987	C	T	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	42520829	rs1712417	T	C	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	42523341	rs56119841	T	TC	8868.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr15	42524065	rs1630294	T	C	5409.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	42524165	rs1712420	C	T	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	42528676	rs1679012	C	T	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	42529892	rs66512609	C	CT	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.099;QD=8.49;ReadPosRankSum=-0.524;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr15	42531768	rs11070363	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	42553218	rs5812215	AT	A	1646.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.91;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	42560312	rs2412681	C	T	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	42564369	rs4244587	C	T	3335.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	42564370	rs4244588	A	G	3335.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	42564902	rs7181758	A	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	42568547	rs8043515	C	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	42568630	rs8023678	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	42570105	rs12916792	G	C	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.28;QD=19.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	42570201	rs12916523	A	G	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	42570433	rs8024390	C	T	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	42570718	rs8024732	A	G	14119.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr15	42573067	rs8037020	C	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	42575963	rs2412689	A	G	12271.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr15	42579822	rs11070371	T	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	42579948	rs8037627	T	C	12376.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,491:1.00:491
chr15	42580106	rs8036596	A	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	42584909	rs4923939	C	T	8648.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr15	42589987	rs4924651	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.59;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	42589996	rs4924652	C	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	42590034	rs72029141	TATTCATTC	T	233.79	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	42603083	rs2412694	C	T	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	42606094	rs7173358	A	G	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	42606153	rs141877658	A	AAACAACAAC,AAACAACAACAAC	3268.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=65;set=Intersection	GT:AF:DP	1/2:0.17,0.83:60
chr15	42606161	rs11637731	G	A	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=39.08;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	42619508	rs1659215	C	T	7415.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr15	42632965	.	G	GT	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.967;QD=2.62;ReadPosRankSum=1.316;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr15	42694944	rs2241827	T	C	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	42701688	rs3115883	T	C	1696.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.909;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.04;ReadPosRankSum=-0.632;SOR=0.408;set=HC	GT:AD:AF:DP	1/1:4,73:0.95:77
chr15	42703406	rs3115884	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:3,84:0.97:87
chr15	42704105	rs3098423	C	T	10008.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr15	42758159	rs2244773	T	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	42764519	rs7177521	G	C	10846.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr15	42805000	rs4573906	G	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr15	42820451	rs9302112	C	T	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	42851464	rs11070374	C	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr15	42930891	rs1197550	A	T	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=1.831;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:12,59:0.83:71
chr15	43025476	rs34650750	C	CT	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=2.919;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-1.389;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:279,66:0.19:345
chr15	43075531	rs9920092	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	43170690	rs10650948	T	TAC	1579.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:41,72:0.64:113
chr15	43237805	rs11352938	AT	A	212.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	43237813	rs67230215	TTCACCATTGA	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	43244699	rs2277532	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:7,63:0.90:70
chr15	43256121	rs2054389	T	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	43322113	rs3736054	C	A	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	43324942	rs6493077	C	T	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	43328663	rs3784265	C	T	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.80;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	43330175	rs7166596	A	T	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	43348679	rs78940367	C	T	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	43352041	rs4924704	G	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	43398108	rs68062403	A	G	7996.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:39,360:0.90:399
chr15	43453056	rs11070392	C	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr15	43478113	rs540587	G	C	11627.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,446:1.00:446
chr15	43478511	rs530118	C	T	4983.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=-1.159;SOR=0.563;set=HC	GT:AD:AF:DP	1/1:10,202:0.95:212
chr15	43481299	rs6493079	A	G	594.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=14.343;MLEAC=2;MLEAF=1.000;MQ=64.19;MQRankSum=3.276;QD=14.16;ReadPosRankSum=-1.292;SOR=0.024;set=HC	GT:AD:AF:DP	1/1:8,34:0.81:42
chr15	43483537	rs495286	T	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.19;QD=27.01;SOR=2.269;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	43512847	rs3832982	AC	A	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=9.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=1.217;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:97,36:0.27:133
chr15	43527236	rs579178	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr15	43568999	rs530683	C	T	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:4,74:0.95:78
chr15	43569097	rs146833656	C	T	9428.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=1.084;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.88;ReadPosRankSum=0.818;SOR=0.650;set=HC	GT:AD:AF:DP	1/1:30,401:0.93:431
chr15	43739686	rs72067439	G	GA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=8.289;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.497;QD=1.09;ReadPosRankSum=0.060;SOR=0.176;set=HC	GT:AD:AF:DP	0/1:73,24:0.25:97
chr15	43784000	rs555252	C	T	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	43818115	rs145659671	G	A	11796.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:32,479:0.94:511
chr15	43873392	rs144369708	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.694;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=9.234;MLEAC=1;MLEAF=0.500;MQ=48.48;MQRankSum=-4.362;QD=1.88;ReadPosRankSum=-4.300;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr15	43903198	.	TTGTGTG	T,TTG	12243.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DP=641;ExcessHet=3.0103;FS=6.853;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.81;MQRankSum=-0.047;QD=37.67;ReadPosRankSum=1.250;SOR=1.856;set=HC	GT:AD:AF:DP	1/2:14,68,243:0.21,0.75:325
chr15	43927623	rs375933133	CA	C	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=3.957;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.095;QD=0.51;ReadPosRankSum=0.471;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:337,91:0.21:428
chr15	43941125	rs2470122	G	C	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr15	44002601	rs367852185	G	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.30;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	44023810	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.76;MQRankSum=0.498;QD=1.27;ReadPosRankSum=0.791;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:72,18:0.20:90
chr15	44028569	rs56181031	G	C	587.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.61;MQRankSum=1.099;QD=22.58;ReadPosRankSum=0.847;SOR=0.598;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr15	44038899	rs2411284	C	T	10812.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;MQRankSum=-0.403;QD=21.89;ReadPosRankSum=0.893;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:38,456:0.92:494
chr15	44053545	rs181218253	T	C	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	44053617	rs8040336	C	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr15	44058332	rs34486889	TA	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.782;QD=3.17;ReadPosRankSum=0.535;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr15	44061802	rs1053492	C	T	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:5,247:0.98:252
chr15	44062874	rs7181912	A	T	1793.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.88;ReadPosRankSum=-0.719;SOR=0.545;set=HC	GT:AD:AF:DP	1/1:5,77:0.94:82
chr15	44068160	rs3844075	C	G	5870.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:7,221:0.97:228
chr15	44084705	rs4644832	G	A	11717.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=1.333;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.96;ReadPosRankSum=-1.013;SOR=0.521;set=HC	GT:AD:AF:DP	1/1:24,465:0.95:489
chr15	44090251	.	C	CT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=2.331;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr15	44090854	rs654276	T	C	144.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	44091351	rs656473	A	T	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	44107382	.	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.370;QD=2.11;ReadPosRankSum=1.285;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr15	44120559	rs678084	T	G	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:6,214:0.97:220
chr15	44599410	rs199591388	CT	C	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-3.069;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:101,72:0.42:173
chr15	44778936	rs2453275	T	A	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=25.38;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	44811329	.	G	GT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-1.362;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr15	44890420	rs190227684	A	G	7692.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.10;ReadPosRankSum=1.165;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:13,320:0.96:333
chr15	44903285	rs12909507	C	A	91.85	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	44943757	rs3759871	A	G	11400.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,434:1.00:434
chr15	44949354	rs80338868	C	T	7695.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.088;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.53;ReadPosRankSum=0.886;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:13,314:0.96:327
chr15	44951174	rs7165146	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	44966389	rs8026845	T	C	8333.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr15	45028919	rs11388295	C	CT	1336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-0.139;SOR=1.468;set=HC	GT:AD:AF:DP	0/1:22,77:0.78:99
chr15	45047134	rs2470911	G	A	12604.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:32,519:0.94:551
chr15	45047573	rs3100139	C	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	45048757	rs3759881	T	A	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	45059390	rs6493127	C	T	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	45060014	rs3100143	A	T	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	45123692	rs2689311	C	T	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:5,72:0.94:77
chr15	45123909	.	TAA	T	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.89;MQRankSum=-5.333;QD=2.03;ReadPosRankSum=0.308;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr15	45217038	.	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.11;ReadPosRankSum=-0.566;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	45250755	rs373082	CA	TG	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	45353230	rs2854446	C	T	11394.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr15	45357410	rs2854437	T	G	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	45361011	rs28662287	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.09;QD=25.20;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	45361046	.	AT	A	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=-2.493;QD=5.86;ReadPosRankSum=1.933;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr15	45361180	rs55739437	A	T	3178.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.94;MQRankSum=-0.926;QD=23.55;ReadPosRankSum=0.217;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:6,129:0.96:135
chr15	45365724	rs76283634	C	T	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.453;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.177;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=-3.843;QD=8.44;ReadPosRankSum=1.149;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,28:0.47:59
chr15	45365762	rs78724098	T	C	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.985;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.348;MLEAC=1;MLEAF=0.500;MQ=54.01;MQRankSum=-6.127;QD=6.15;ReadPosRankSum=0.912;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr15	45365783	rs143548681	C	A	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=10.866;MLEAC=1;MLEAF=0.500;MQ=54.18;MQRankSum=-5.568;QD=14.63;ReadPosRankSum=-1.079;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr15	45365790	rs56131648	T	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.787;MLEAC=1;MLEAF=0.500;MQ=55.09;MQRankSum=-5.181;QD=16.96;ReadPosRankSum=0.184;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr15	45365792	rs139397987	G	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.886;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-5.015;QD=15.06;ReadPosRankSum=0.339;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr15	45387550	rs199138	A	G	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	45388382	rs2554451	C	T	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	45391566	rs269869	A	T	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	45392075	rs269868	G	A	7007.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr15	45398965	rs269862	G	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	45399467	rs190599	A	G	30852.77	.	AC=2;AF=1.00;AN=2;DB;DP=1189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,1176:1.00:1176
chr15	45400164	rs269861	T	C	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	45400358	rs269860	C	G	15201.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr15	45404066	rs2001616	G	A	11528.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr15	45404979	rs182090	T	G	11114.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr15	45405463	rs269856	G	T	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr15	45408414	rs2576090	C	G	11643.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr15	45408691	rs2576091	C	G	17136.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr15	45408699	rs2252371	C	T	17655.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,407:1.00:407
chr15	45408710	rs2554459	A	G	12643.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr15	45408933	rs2576092	T	C	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	45409271	rs955152	C	T	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	45434493	rs2292464	C	T	129.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	45435217	rs2292465	T	C	771.28	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:4,32:0.89:36
chr15	45439910	rs938129	A	G	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	45443012	rs8041911	T	C	5747.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:12,237:0.95:249
chr15	45445692	.	ATGTGTGTGTGTGTGTG	A,ATG	4057.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=287;set=Intersection	GT:AF:DP	1/2:0.30,0.60:144
chr15	45446084	rs11306605	CA	C	1406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=4.692;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.898;QD=9.91;ReadPosRankSum=-1.603;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:29,113:0.80:142
chr15	45457106	rs12438755	G	T	8486.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:24,353:0.94:377
chr15	45457127	rs7169193	C	T	5947.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:22,248:0.92:270
chr15	45467540	rs1632144	C	G	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	45491136	rs62026667	C	G	9045.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:14,356:0.96:370
chr15	45544319	rs2899376	T	G	175.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	45545378	rs17215668	GC	G	2598.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	45545478	rs11854484	C	T	7013.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr15	45554267	rs1060896	C	A	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr15	45556829	rs11631021	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	45557456	rs11632419	C	A	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	45557468	rs2271438	A	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	45561868	rs2413769	C	A	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	45779810	rs2453531	G	A	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	45968237	rs199639985	T	TA	46	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	45968435	rs1044032	T	C	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:15,191:0.93:206
chr15	45968535	rs12914266	A	C	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	45974628	rs2289578	G	A	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr15	47873549	rs4775699	C	T	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	47873605	rs4774498	T	A	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	48058214	rs531596	C	T	13037.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.91;ReadPosRankSum=0.226;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:27,542:0.95:569
chr15	48058259	rs616871	T	A	9209.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.007;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.74;ReadPosRankSum=0.111;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:15,373:0.96:388
chr15	48058474	rs147678407	C	CT	50.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	48058484	rs528882	G	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	48058652	rs472081	G	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	48058684	rs145748369	GTTGT	G	3497.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.82;ReadPosRankSum=1.644;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:6,89:0.94:95
chr15	48058929	rs603569	G	A	8280.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.86;ReadPosRankSum=-0.931;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:13,334:0.96:347
chr15	48063076	rs568215	T	C	7155.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:12,287:0.96:299
chr15	48443699	rs2470103	T	C	16052.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,634:1.00:634
chr15	48450517	rs3736482	T	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	48460786	rs11070626	T	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	48460927	rs8023906	C	T	9619.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr15	48520699	rs1484547	T	C	96.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	48538979	rs35669481	A	AAAC	1021.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	48539026	rs11636073	A	T	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	48539043	rs8028035	G	A	4821.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	48541700	rs2279365	G	A	11999.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:23,484:0.95:507
chr15	48561834	rs1484551	A	G	6060.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr15	48580713	rs1552311	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	48623248	rs66822811	TCGGGCGCGGTGTCTTGCCCACAGCTTGGGGAGCGGCCC	T	1135.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	48623500	rs12592155	C	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=1.263;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:115,11:0.09:126
chr15	48623524	rs12592157	C	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=1.945;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:85,11:0.11:96
chr15	48749040	.	CGT	C	373.73	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr15	48755168	rs9806595	T	C	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	48763008	rs75227249	A	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	48764655	.	TAA	T,TA	1141.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.50;MQRankSum=0.557;QD=14.64;ReadPosRankSum=0.273;SOR=0.793;set=HC	GT:AD:AF:DP	1/2:4,37,37:0.47,0.47:78
chr15	48779200	rs72132658	AATAAC	A	1163.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.62;ReadPosRankSum=-0.435;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr15	48779231	rs72158035	GTAAAA	G	2086.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=61.50;MQRankSum=1.166;QD=33.66;ReadPosRankSum=1.848;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:7,55:0.89:62
chr15	48779402	rs11853943	C	T	10507.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.10;ReadPosRankSum=0.542;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:14,422:0.97:436
chr15	48789634	rs140605	T	C	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr15	48795877	rs16961033	G	A	261.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	48797124	rs35464791	T	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr15	48797307	rs25458	A	G	5806.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:6,233:0.97:239
chr15	48797424	rs8037304	C	A	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr15	48805637	rs2306352	G	A	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:5,166:0.97:171
chr15	48807637	rs4775765	C	T	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	48813107	rs2413907	G	T	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:4,177:0.98:181
chr15	48826427	rs373084568	GA	G	671.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.034;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:23,48:0.68:71
chr15	48903126	rs1018148	A	G	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	49009405	.	A	AT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.755;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr15	49040864	rs34352957	TA	T	64.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.45;ReadPosRankSum=0.282;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr15	49083577	rs58156069	C	T	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:3,121:0.98:124
chr15	49097733	rs34518970	T	TC	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=6.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=2.058;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:23,21:0.48:44
chr15	49098016	rs1426200	C	A	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr15	49118087	rs3743292	C	T	736.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.02;ReadPosRankSum=0.687;SOR=0.430;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr15	49135892	rs882824	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	49143232	rs17467239	G	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	49149828	rs4774526	C	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr15	49168649	rs34156861	TAC	T	588.74	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr15	49168841	rs34224664	G	A	2137.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.02;ReadPosRankSum=2.545;SOR=0.656;set=HC	GT:AD:AF:DP	1/1:3,86:0.97:89
chr15	49285001	rs34895054	G	C	9213.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:24,392:0.94:416
chr15	49325289	rs11638215	A	C	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:5,145:0.97:150
chr15	49420816	rs17394420	A	G	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	49421868	rs507054	T	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	49429410	rs17473148	A	G	888.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.67;ReadPosRankSum=-0.600;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:3,40:0.93:43
chr15	49487225	rs11635814	T	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	49493250	.	AGT	A	233.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.62;ReadPosRankSum=-1.501;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr15	49620200	rs1055254	C	T	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:12,147:0.92:159
chr15	49716845	rs16962440	T	C	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	49867122	rs12901416	A	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	49867148	rs12902794	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	49867323	rs12902107	G	A	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	49869141	rs12912703	C	G	535.56	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr15	49869576	rs12148716	T	C	3102.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.374;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.98;ReadPosRankSum=-1.469;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:8,127:0.94:135
chr15	49923026	rs1976551	C	G	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	50152274	rs4494483	T	A	926.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.994;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.906;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.60;ReadPosRankSum=-1.425;SOR=0.200;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr15	50152583	rs4774549	G	T	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	50158695	rs11630021	C	A	8720.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:14,357:0.96:371
chr15	50171694	rs3803363	C	T	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	50193553	rs2009833	G	A	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	50226313	rs2452524	G	T	6111.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.883;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=-1.255;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:1,239:1.00:240
chr15	50311135	rs12591825	C	A	10740.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:12,434:0.97:446
chr15	50311148	rs11070741	A	G	10427.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:12,419:0.97:431
chr15	50489677	rs1863511	A	T	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.232;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	50497354	rs2278166	G	T	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	50521265	rs5812509	T	TA	12080.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=31.30;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,386:1.00:386
chr15	50546935	.	TTCTCTC	T	1122.73	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr15	50546971	rs80072362	C	G	1576.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.684;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.46;ReadPosRankSum=-0.273;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr15	50546971	.	CTC	GTG	416	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=2;MGOF=54;MMLQ=27;MQ=55.6;NF=7;NR=15;PP=416;QD=21.3394488574;SC=CTCTCTCTCTCTCTGTGTGTG;SbPval=0.63;Source=Platypus;TC=24;TCF=8;TCR=16;TR=22;WE=50546981;WS=50546961;set=Platypus	GT:AD:AF:DP	1/1:2,22:0.92:24
chr15	50546973	rs79724974	C	G	1575.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.788;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.40;ReadPosRankSum=0.096;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr15	50555710	rs854160	T	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.61;QD=25.05;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	50570999	rs11372405	G	GT	757.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=0.436;QD=15.46;ReadPosRankSum=-0.370;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:5,44:0.90:49
chr15	50574621	rs11635546	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	50581634	rs34330339	T	TA,TAA	2729.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.326;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.17;ReadPosRankSum=0.670;SOR=1.044;set=HC	GT:AD:AF:DP	1/2:14,111,34:0.70,0.21:159
chr15	50596070	rs7164798	T	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	50601811	rs11636564	T	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr15	50602067	rs35446819	T	C	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr15	50646313	.	C	T	211.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr15	50754339	rs3098169	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	50764099	rs57729947	C	CT	174.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.253;QD=11.65;ReadPosRankSum=-0.493;SOR=0.473;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr15	50773755	rs3131561	G	A	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	50782335	rs2289108	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	50782434	.	G	GT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.130;QD=0.46;ReadPosRankSum=-1.067;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:125,26:0.17:151
chr15	50867082	rs473357	G	A	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:4,150:0.97:154
chr15	50878478	rs539383	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	50878630	rs8042919	G	A	1994.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.16;ReadPosRankSum=-1.726;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:6,84:0.93:90
chr15	50882045	rs113973270	T	TTTTTTTG	708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=3.087;QD=37.30;ReadPosRankSum=0.866;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:2,17:0.89:19
chr15	50882072	rs200955704	TGAGAACAAGTCTC	T	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:2,20:0.91:22
chr15	50885976	rs567109	G	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr15	50888568	rs543821	A	G	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr15	50888619	rs675011	A	T	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	50901929	rs35281039	TA	T	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.305;QD=1.40;ReadPosRankSum=0.943;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr15	50920509	.	C	CT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.38;ReadPosRankSum=0.113;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr15	50924995	rs2292175	G	A	290.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr15	50926523	rs140773609	AAAATAAAT	AAAAT,A	2334.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=74;set=Intersection	GT:AF:DP	1/1:1.00:54
chr15	50941108	rs2063011	C	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	51017527	rs140174698	AAAAAC	A	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	51029104	rs35812835	G	GTT	237	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.164;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr15	51029111	rs12903561	G	T	807.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.66;ReadPosRankSum=-0.218;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr15	51040798	rs8035452	T	C	1197.89	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:5,46:0.90:51
chr15	51217361	rs2306331	T	C	6391.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.07;ReadPosRankSum=-0.921;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:10,267:0.96:277
chr15	51217475	rs2306332	G	A	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr15	51276128	rs2306335	A	G	98.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	51293164	rs3840015	G	GT	389.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	51350655	rs76241791	AT	A	1030.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr15	51502844	rs4646	A	C	7868.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:24,329:0.93:353
chr15	51669625	rs17602686	A	C	5454.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	51689624	rs1147142	A	C	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	51689772	rs17648128	G	A	10384.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:29,436:0.94:465
chr15	51692407	rs148539600	C	G	9924.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:17,406:0.96:423
chr15	51748610	rs3736485	A	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	51749726	rs930920	A	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	51750652	rs11630842	G	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	51750846	rs7165887	G	A	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	51751091	rs111734926	TAGCAGC	T	2537.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	51758345	rs10706765	CA	C	584.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr15	51770456	rs11291027	AT	A	686.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	51783820	rs10851500	T	C	13876.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,548:1.00:548
chr15	51783981	rs12101858	G	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	51791559	rs12102203	A	G	12894.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr15	51795172	rs12592889	G	A	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	51857220	rs11070857	C	T	175.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	51868373	rs2414105	A	G	3192.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.340;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=0.000;QD=25.96;ReadPosRankSum=1.376;SOR=0.490;set=HC	GT:AD:AF:DP	1/1:1,122:0.99:123
chr15	51914662	rs2278990	G	A	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr15	51914716	rs2278989	T	C	9761.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr15	51914778	rs6493514	T	G	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr15	51974910	rs2054166	A	T	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	51981593	.	TGG	T	127.73	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,10:0.20:49
chr15	51981597	rs28493453	G	T	709.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr15	52017135	rs138439412	C	T	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:10,170:0.94:180
chr15	52017345	rs2414116	A	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	52043327	rs12903500	C	T	11837.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr15	52060657	rs61348403	C	CT	2267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.597;QD=11.75;ReadPosRankSum=1.374;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:47,146:0.76:193
chr15	52155246	rs150366626	C	T	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:8,157:0.95:165
chr15	52155314	rs2570251	T	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	52185937	rs2959307	G	A	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=24.96;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	52185961	rs11370809	C	CA	841.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=11.22;ReadPosRankSum=1.984;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:20,55:0.73:75
chr15	52186158	rs2959285	A	C	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	52192262	rs113447185	A	AGTTAT	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	52239380	rs2414122	C	A	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	52246665	rs2959293	G	A	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	52250789	rs2593187	T	C	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	52251201	.	CT	C	58.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.87;ReadPosRankSum=-1.171;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr15	52252799	rs2258248	C	T	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	52257874	rs2241503	A	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	52404862	rs2231292	A	C	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	52415086	rs142280018	T	TACAC	348.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	52421000	rs2414135	A	G	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:3,100:0.97:103
chr15	52486306	rs11855672	C	T	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	52503895	rs34276836	T	C	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	52506937	rs34638854	A	ATT	498.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=12.47;ReadPosRankSum=0.500;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr15	52510669	rs3751609	C	T	3425.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.28;ReadPosRankSum=-1.259;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:12,149:0.93:161
chr15	52515678	rs4405492	G	T	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	52531941	rs11635028	A	G	8166.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr15	52534344	rs3751631	G	A	8343.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr15	52539673	rs10163109	C	T	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	52548759	.	A	AAC	65.77	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.44;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	52553007	rs4497629	C	G	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	52556429	rs4776032	A	G	5763.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr15	52564191	rs3751629	T	C	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	52571270	.	G	GT	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=1.858;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.678;QD=3.29;ReadPosRankSum=-0.023;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:84,48:0.36:132
chr15	52587880	rs12907067	C	T	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	52615712	rs2290334	T	C	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr15	52628489	rs8035295	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	52640990	rs11386962	T	TA	461.74	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:4,28:0.88:32
chr15	52643564	rs1058219	G	A	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:22,184:0.89:206
chr15	52667450	rs3816449	T	C	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:3,97:0.97:100
chr15	52667552	rs2414145	G	A	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr15	52675261	rs4774621	T	C	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr15	52681573	rs1724623	A	G	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.73;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	52681643	.	A	AT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.734;QD=1.34;ReadPosRankSum=0.352;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr15	52684004	rs1669872	C	A	1472.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.627;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.55;ReadPosRankSum=1.290;SOR=0.334;set=HC	GT:AD:AF:DP	1/1:1,59:0.98:60
chr15	52689526	rs2924130	T	C	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr15	52689631	rs1724577	T	G	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr15	52702400	rs10518689	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr15	52702699	rs72623980	T	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr15	52708189	rs1669858	C	T	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	52708534	rs11856752	T	G	2156.78	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:12,96:0.89:108
chr15	52725334	rs11853875	C	T	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr15	52892477	rs35694811	CT	C	647.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr15	52901283	rs61731670	TT	CC	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;JOINED;set=Intersection	GT:AD:AF:DP	1/1:7,126:0.95:133
chr15	53082214	rs149161886	GTC	G	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.361;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:54,20:0.27:74
chr15	53230662	rs12050508	C	T	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:9,139:0.94:148
chr15	53815527	.	AAG	A	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=5.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=2.000;SOR=1.440;set=HC	GT:AD:AF:DP	0/1:117,22:0.16:139
chr15	53905729	rs62005937	T	C	274.18	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr15	53905779	rs35292476	C	T	836.74	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:4,36:0.90:40
chr15	53905820	rs34829468	GA	G	1453.76	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:12,86:0.88:98
chr15	53997089	rs578595	C	A	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	53998314	rs690235	G	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	54008795	rs690337	T	C	14683.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr15	54008845	rs690346	T	C	15006.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr15	54306925	rs12437941	G	A	6551.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr15	54336662	rs76849034	A	G	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:10,183:0.95:193
chr15	54630552	rs57449290	T	TTGTC	10306.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=45.61;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr15	54630758	rs12913366	A	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	54685463	rs489526	G	A	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	54914716	rs2681964	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	54915975	rs2414332	A	T	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	54918911	rs11856235	T	C	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	54918943	rs11852743	G	A	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	54919047	rs1520411	A	G	9388.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.005;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=0.401;SOR=0.304;set=HC	GT:AD:AF:DP	1/1:1,364:1.00:365
chr15	55613405	.	T	TA	266.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;MQRankSum=-0.167;QD=13.34;ReadPosRankSum=2.340;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr15	55710369	rs6493785	T	A	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	55759193	rs600753	T	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	55840995	rs2617227	A	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	55841032	rs12917202	A	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=32.67;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	55841195	.	T	TA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.164;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:160,29:0.15:189
chr15	55933429	rs12902393	T	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:5,85:0.94:90
chr15	55967916	rs2118781	T	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	55967950	rs117361742	C	A	273.78	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr15	55970041	rs11854213	A	G	5565.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:11,231:0.95:242
chr15	55972660	.	C	CT	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.565;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:140,36:0.20:176
chr15	55972797	rs16976466	T	C	7690.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=2.692;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.265;QD=23.74;ReadPosRankSum=1.271;SOR=0.463;set=HC	GT:AD:AF:DP	1/1:10,314:0.97:324
chr15	55974742	.	T	TTTTATTTA	1914.73	.	AC=2;AF=1.00;AN=2;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=43.52;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	56130286	rs11071227	A	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	56132616	rs11858692	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	56133959	rs9788664	C	T	527.53	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:3,24:0.89:27
chr15	56139153	rs2288346	T	C	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	56144888	.	AATATATAT	A	910.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	56152598	rs4774228	A	G	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	56152729	rs2303579	T	C	7238.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:4,285:0.99:289
chr15	56152872	rs2303580	C	T	6974.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.79;ReadPosRankSum=1.164;SOR=0.664;set=HC	GT:AD:AF:DP	1/1:17,289:0.94:306
chr15	56258809	rs6493829	A	T	316.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.64;ReadPosRankSum=1.126;SOR=0.481;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr15	56285721	rs77914199	G	A	2318.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.89;ReadPosRankSum=-1.182;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:8,103:0.93:111
chr15	56297909	rs3959682	C	T	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.438;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=47.63;MQRankSum=-5.508;QD=16.93;ReadPosRankSum=-1.447;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:22,51:0.70:73
chr15	56386577	rs7170589	T	G	10974.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr15	56387931	rs11071247	C	T	15440.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:1,594:1.00:595
chr15	56390616	rs748344	T	G	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr15	56394295	rs17238601	T	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	56657581	rs2682033	A	C	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	56680865	rs16976890	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr15	56680944	rs1477589	T	C	77.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	56686239	rs34544252	A	T	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	56719797	rs795785	G	T	590.10	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.04;ReadPosRankSum=-1.168;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr15	56721264	rs795787	G	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	56721406	rs808730	C	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	56923536	rs3803457	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	56923714	rs8043381	G	A	12700.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,493:1.00:493
chr15	56946296	rs8028457	C	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.77;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	56946980	rs12911381	T	G	12065.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:33,498:0.94:531
chr15	56961272	rs12911191	T	A	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	56974684	.	G	GA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-0.296;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr15	56981703	rs1871861	T	A	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	57210297	rs3803455	G	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr15	57210562	rs213150	C	A	8463.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr15	57210627	rs2165461	G	C	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:6,65:0.92:71
chr15	57364814	rs2951904	G	A	1053.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.91;ReadPosRankSum=-1.251;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:2,44:0.96:46
chr15	57484572	.	C	CT	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=2.270;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:103,41:0.28:144
chr15	57484613	rs12914481	G	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:5,53:0.91:58
chr15	57511918	rs11395092	C	CT	94.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=9.41;ReadPosRankSum=0.385;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr15	57523542	rs1037958	A	G	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:8,172:0.96:180
chr15	57524756	rs2248620	G	A	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	57524857	rs2290938	T	C	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:9,172:0.95:181
chr15	57555523	rs7182038	C	A	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	57731335	rs1280395	A	C	12348.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr15	57731728	rs1280396	A	G	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:12,132:0.92:144
chr15	57732743	rs1280398	T	C	5797.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.66;ReadPosRankSum=1.686;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:9,236:0.96:245
chr15	57734380	rs369072907	GAAA	G	549.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;QD=24.99;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr15	57743933	rs1280406	A	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	57753867	rs1511951	C	A	3223.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.121;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.93;ReadPosRankSum=-0.982;SOR=0.452;set=HC	GT:AD:AF:DP	1/1:13,141:0.92:154
chr15	57836823	rs8029295	G	A	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	57910444	rs935548	A	G	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	57918090	rs2958059	A	G	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr15	57967219	rs1991252	T	C	13087.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr15	57967285	rs5812908	AT	A	3144.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:19,182:0.91:201
chr15	57976523	rs6493944	A	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	57976583	rs2554032	A	C	4934.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	58000981	rs1062707	C	T	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=25.75;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	58287415	.	CA	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.493;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr15	58465171	rs2292712	G	A	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	58465483	rs2292713	C	T	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	58467095	rs2280195	G	A	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:16,279:0.95:295
chr15	58471368	rs2249783	C	T	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	58476010	rs3742956	A	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	58476281	rs1867380	A	G	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr15	58723426	rs1077835	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	58723479	rs1077834	T	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	58723675	rs1800588	C	T	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	58837910	rs2414592	T	C	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr15	58838038	rs6084	C	G	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr15	58840450	rs1007543	A	C	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	58853079	rs3829462	C	A	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	58853109	rs3829461	A	G	6610.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr15	58853212	rs71964604	GAC	G	5387.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	58853218	rs55913623	C	T	5396.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.60;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	58853307	rs4774305	C	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	58853363	rs1869129	C	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	58857230	rs4775080	G	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.31;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	58857255	rs4775081	A	G	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	58857378	rs17269397	A	G	6746.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr15	58891949	.	G	GA	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.005;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:84,28:0.25:112
chr15	58983875	.	C	CT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=6.239;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.339;QD=3.48;ReadPosRankSum=-0.411;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr15	59144199	rs16940850	A	G	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	59185929	rs4238332	T	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	59190996	rs4398051	C	A	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:3,103:0.97:106
chr15	59323048	rs2899642	C	G	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr15	59399501	rs11293095	CT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.288;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr15	59455272	rs55654146	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr15	59464039	rs2306788	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:8,106:0.93:114
chr15	59515434	rs2306779	C	T	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	59515514	rs10711975	GA	G	175.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-1.474;SOR=1.872;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr15	59524056	rs7165587	T	C	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	59528994	rs11356613	AT	A	456.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	59548475	rs4508371	C	T	26190.77	.	AC=2;AF=1.00;AN=2;DB;DP=1045;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,1040:1.00:1040
chr15	59664607	rs7175010	C	A	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	59911892	rs3743119	G	T	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	59931556	rs8033208	G	C	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	59934485	rs192601744	T	C	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:6,121:0.95:127
chr15	59960261	rs6151568	T	C	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:9,91:0.91:100
chr15	59960956	rs71425879	T	TAC	550.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr15	59963235	.	G	A	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.68;MQRankSum=-3.268;QD=13.73;ReadPosRankSum=0.353;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr15	59963240	.	C	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-2.450;QD=15.60;ReadPosRankSum=0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr15	59963245	.	C	T	124.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-2.655;QD=13.86;ReadPosRankSum=-0.060;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr15	59963246	.	T	G	124.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-2.655;QD=13.86;ReadPosRankSum=-0.060;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr15	59963259	.	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-1.981;QD=17.82;ReadPosRankSum=-0.366;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr15	59963270	.	C	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-1.981;QD=5.82;ReadPosRankSum=-1.068;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr15	59963279	.	A	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-1.834;QD=6.79;ReadPosRankSum=-1.834;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr15	59963488	rs1135148	A	G	1611.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.378;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.70;ReadPosRankSum=-0.580;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:1,67:0.99:68
chr15	59964798	rs4774342	C	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	59964987	rs6151535	G	A	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:8,131:0.94:139
chr15	59970298	rs2307272	C	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:10,88:0.90:98
chr15	59974566	rs2307275	C	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:5,140:0.97:145
chr15	59974777	rs6151483	A	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:4,66:0.94:70
chr15	59981242	rs2306358	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:7,41:0.85:48
chr15	59981515	rs3087328	A	G	7480.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.729;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.25;ReadPosRankSum=1.936;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:28,324:0.92:352
chr15	59981590	rs754641	G	A	4435.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=5.182;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=1.475;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:8,170:0.96:178
chr15	59981719	rs754642	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	60297110	rs75582291	G	A	5307.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:5,202:0.98:207
chr15	60643302	rs3743269	T	C	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	60649579	rs5813020	TC	T	3346.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=36.38;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	60653205	rs17845226	C	A	4537.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;MQRankSum=-0.352;QD=24.27;ReadPosRankSum=1.828;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:4,183:0.98:187
chr15	60685141	rs11318426	TA	T	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=5.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.139;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:17,14:0.45:31
chr15	60689877	rs12904258	A	G	2921.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.81;ReadPosRankSum=0.973;SOR=1.632;set=HC	GT:AD:AF:DP	1/1:2,107:0.98:109
chr15	60689927	rs12904756	G	C	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.891;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr15	60690089	rs12904657	A	G	10953.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.22;ReadPosRankSum=-1.844;SOR=0.538;set=HC	GT:AD:AF:DP	1/1:30,463:0.94:493
chr15	60724317	rs60675189	T	TA	486.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	60740915	rs1901993	C	T	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.36;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	60749073	rs72746688	T	C	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	60771289	rs3743267	A	G	32072.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=1344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.413;QD=24.19;ReadPosRankSum=-0.285;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:44,1282:0.97:1326
chr15	60771438	rs11389291	G	GC	2564.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:3,73:0.96:76
chr15	60789798	rs11071539	G	T	7624.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr15	60793310	.	TGTCTTAGGAGAAAAACCTAGGTCTTAGGTTTTCCTAAGGTTCTCCTAAGTCCAATAGAAG	T	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.48;ReadPosRankSum=0.000;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr15	60803741	rs61740274	C	T	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:7,219:0.97:226
chr15	60807065	rs34783737	A	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	60824108	rs10851682	T	C	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	62146969	rs2241491	T	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	62147207	rs2241492	T	A	908.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.56;ReadPosRankSum=-0.238;SOR=0.655;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr15	62148730	rs3833021	TA	T	606.50	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:5,38:0.88:43
chr15	62160758	rs7163441	C	A	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	62167017	rs6494299	G	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	62167897	rs12708469	G	A	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	62169072	rs11071634	A	G	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	62172985	rs3809517	G	A	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	62175019	rs12912348	T	C	460.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.95;ReadPosRankSum=2.280;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr15	62199342	rs28413840	T	A	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	62201333	rs35201581	GA	G	2389.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.525;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.712;QD=15.72;ReadPosRankSum=-0.273;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:13,139:0.91:152
chr15	62202290	rs34965045	C	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	62202482	rs10851704	C	T	12584.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,489:1.00:489
chr15	62210274	rs11071639	G	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	62223273	rs9788670	C	T	6400.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr15	62232796	rs7172838	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	62265019	rs3833020	A	AT	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	62265507	rs11071645	G	A	318.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr15	62284101	rs8032433	A	G	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.54;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	62304420	rs140372940	GACACAC	G,GAC	1688.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.305;QD=38.38;ReadPosRankSum=-1.026;SOR=0.330;set=HC	GT:AD:AF:DP	1/2:1,10,33:0.23,0.75:44
chr15	62327127	rs2414758	T	C	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	62352374	rs11639147	A	G	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	62534764	rs2414766	A	T	2483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=2.916;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:27,126:0.82:153
chr15	62535030	rs1996469	G	A	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	62539151	rs7402021	T	C	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	62539153	rs59880159	T	TGG	6290.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	62539162	rs2955803	A	C	7090.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	62539185	rs2945418	T	C	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.80;QD=26.07;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr15	62539781	rs2611797	A	G	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr15	62932556	rs35757182	G	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:4,59:0.94:63
chr15	62936830	rs11852582	C	T	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	62939440	rs938979	T	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	62944448	rs10775179	G	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	62967342	rs1878785	A	G	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr15	62967395	rs1878784	C	T	7089.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr15	62967554	rs1878783	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr15	62979016	rs12917611	A	C	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	62989775	rs8034474	T	C	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	62991210	rs9630428	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	62994428	rs12594220	G	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	62994814	rs56013393	G	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:4,54:0.93:58
chr15	63008755	rs78706616	A	G	417.88	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr15	63014548	rs10775181	A	G	5452.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.143;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.01;ReadPosRankSum=-3.274;SOR=0.571;set=HC	GT:AD:AF:DP	1/1:11,226:0.95:237
chr15	63030398	rs12900862	T	C	9550.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr15	63040516	.	C	CA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=0.662;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr15	63044379	rs7171264	A	G	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	63044637	rs7176359	A	G	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:8,161:0.95:169
chr15	63047778	rs8033767	C	T	10007.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.01;ReadPosRankSum=-1.808;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:20,415:0.95:435
chr15	63053858	rs3803497	T	C	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:3,145:0.98:148
chr15	63054069	rs3825972	G	T	6128.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.32;ReadPosRankSum=1.220;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:8,244:0.97:252
chr15	63055658	rs10152548	T	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	63063141	.	CT	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=5.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-1.218;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:104,41:0.28:145
chr15	63075918	.	CTCTGTGTG	C,CTG	2678.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=87;set=Intersection	GT:AF:DP	1/2:0.26,0.72:78
chr15	63111778	rs138463845	G	A	14956.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:18,589:0.97:607
chr15	63131117	rs937418	T	A	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.54;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr15	63131237	rs10679176	C	CAG	1904.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=38.87;SOR=1.378;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	63340469	rs140483658	C	G	9370.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:21,391:0.95:412
chr15	63340647	rs4374117	A	G	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	63349096	rs4775613	G	A	4511.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.00;ReadPosRankSum=0.271;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:5,183:0.97:188
chr15	63351687	rs4775614	A	G	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	63351840	rs1071646	C	A	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	63353760	rs4774472	C	A	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	63363401	rs201620283	C	CATTTTGTTTT	1786.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	63413997	rs8182083	C	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	63414083	rs34317102	A	C	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	63414723	rs189796619	TGG	CTC	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	0/1:9,51:0.85:60
chr15	63419699	rs34536322	A	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr15	63433766	rs2729835	G	A	9832.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr15	63434110	rs8468	C	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	63447932	.	TA	T	36	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=0.9998;HP=13;HapScore=2;MGOF=2;MMLQ=22;MQ=61.07;NF=0;NR=4;PP=36;QD=10.25;SC=TGTAGCAACCTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=63447940;WS=63447922;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	63449543	rs7170846	A	C	11987.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.70;ReadPosRankSum=-0.357;SOR=0.645;set=HC	GT:AD:AF:DP	1/1:31,497:0.94:528
chr15	63449680	rs2292038	C	G	12121.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.83;ReadPosRankSum=-1.336;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:32,499:0.94:531
chr15	63515946	rs11632192	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	63516266	rs17828874	G	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	63554824	rs72363505	GTA	G	666.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	63569902	rs117618017	C	T	22650.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=1021;ExcessHet=3.0103;FS=1.183;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=-0.346;QD=22.40;ReadPosRankSum=1.931;SOR=0.669;set=HC	GT:AD:AF:DP	1/1:58,953:0.94:1011
chr15	63570441	.	G	GA	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-1.826;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:51,24:0.32:75
chr15	63571279	.	GT	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.219;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr15	63578709	rs58838039	CT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.735;QD=0.65;ReadPosRankSum=-0.079;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:77,28:0.27:105
chr15	63639016	rs2270764	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	63848805	rs3751043	C	G	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	63915786	rs11630290	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	63921152	rs35700814	CT	C	275.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.320;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr15	63922752	rs10851731	T	A	13538.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr15	63932513	rs2228517	G	C	6543.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr15	63935149	rs10519223	A	G	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr15	63937209	rs2229749	C	G	15248.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr15	63953153	rs2272209	A	G	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	63954029	rs2228511	C	T	9136.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr15	63958762	rs1815130	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	63970456	rs2228510	T	C	9466.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr15	63982018	rs11636604	T	C	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	63984772	rs11630720	T	C	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr15	63988357	rs2255243	C	G	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	63988400	rs74814914	G	C	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:5,149:0.97:154
chr15	63998914	rs34366173	CTT	C	758.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=27.10;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	63999112	rs72750987	G	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	64008362	rs17187253	T	C	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	64017798	rs11632718	A	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	64020073	rs9920746	C	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	64039050	rs8034675	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	64039879	rs11631436	G	A	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:4,167:0.98:171
chr15	64048990	rs2271241	T	C	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	64050300	rs12912999	G	A	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	64056437	rs3764186	T	C	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	64215375	rs4776669	G	C	14148.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr15	64231578	.	G	GA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=3.200;QD=1.18;ReadPosRankSum=0.750;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr15	64283625	rs7168753	T	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	64367745	rs332233	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	64367775	rs332234	T	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	64385851	rs332259	T	C	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr15	64388052	rs332258	G	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	64445958	rs11637718	C	G	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:7,105:0.94:112
chr15	64481763	rs75062498	C	T	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr15	64508763	rs6494466	G	A	8347.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:11,336:0.97:347
chr15	64668870	rs190805379	G	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr15	64675250	rs147735462	T	C	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:5,73:0.94:78
chr15	64675313	rs11635527	C	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	64693149	rs11380356	G	GT	1303.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.28;SOR=2.564;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	64706259	rs2046356	G	A	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	64737103	rs7167394	G	C	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	64737225	rs7167612	G	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	64742670	rs7172012	T	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	64915106	rs525878	C	T	11163.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr15	64972760	rs376039877	TTG	T	206.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr15	65033311	rs6494489	C	T	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:10,122:0.92:132
chr15	65040928	rs12911708	C	T	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	65041622	rs6494493	C	A	9130.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr15	65054533	rs72744744	C	T	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr15	65054562	rs57945504	T	TG	7138.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	65054571	rs71133474	A	AG	8103.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	65107804	rs74935506	G	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	65108504	rs17802279	A	T	5841.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	65108652	rs6494498	T	C	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr15	65108707	rs7180207	G	C	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	65110034	rs5024311	G	T	11107.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr15	65110039	rs5024312	C	T	11777.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.21;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr15	65110362	rs56057073	G	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	65110391	rs55945924	C	T	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr15	65113764	rs56305637	CTTTT	C	1884.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=5.082;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.481;QD=30.90;ReadPosRankSum=2.375;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:2,59:0.97:61
chr15	65114363	rs55736601	G	A	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:7,152:0.96:159
chr15	65116328	rs12899195	A	G	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	65116595	rs55675018	G	A	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	65204285	rs11071820	G	T	4006.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.43;ReadPosRankSum=1.279;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:2,162:0.99:164
chr15	65208227	rs1471834	G	A	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:5,114:0.96:119
chr15	65209718	rs34503100	G	GTGTC	10654.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:14,251:0.95:265
chr15	65209818	rs2056496	A	G	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:4,139:0.97:143
chr15	65209880	rs2056497	A	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	65234869	rs3057944	C	CTT	2762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=2.359;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:42,162:0.79:204
chr15	65235776	rs34988193	A	G	10500.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:6,411:0.99:417
chr15	65235861	rs35136467	TC	T	3336.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.290;QD=33.04;ReadPosRankSum=-1.163;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:3,98:0.97:101
chr15	65236875	rs2414865	T	C	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:3,140:0.98:143
chr15	65242260	rs67821096	C	T	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:4,106:0.96:110
chr15	65268979	rs4776255	C	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	65273147	.	T	TA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.551;QD=2.52;ReadPosRankSum=-0.407;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr15	65275609	rs111408068	T	TATAA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	65298672	rs4776660	G	A	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	65308981	rs12912782	T	A	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:5,66:0.93:71
chr15	65312614	rs60772880	C	CA	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.781;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr15	65344035	rs2946676	G	A	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	65350743	rs2232759	C	G	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:10,266:0.96:276
chr15	65350968	rs2232758	T	A	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:11,222:0.95:233
chr15	65351484	rs7175752	C	G	115.78	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr15	65357434	rs2232754	C	T	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	65357491	rs2232753	G	A	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	65369514	rs201466173	G	A	10978.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:20,461:0.96:481
chr15	65369951	rs2919359	A	G	18601.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,712:1.00:712
chr15	65370353	rs2919360	T	C	20104.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:1,763:1.00:764
chr15	65370652	rs12901617	T	C	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr15	65449169	rs2946670	C	T	12868.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,496:1.00:496
chr15	65477364	.	AC	A	1312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.039;ClippingRankSum=0.000;DP=1388;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.420;QD=1.00;ReadPosRankSum=-0.304;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:1129,187:0.14:1316
chr15	65489128	rs938952	C	T	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr15	65489688	rs2679117	T	C	37679.77	.	AC=2;AF=1.00;AN=2;DB;DP=1473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=25.86;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,1457:1.00:1457
chr15	65490901	rs2679118	T	C	12328.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,458:1.00:458
chr15	65497891	rs68021609	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.166;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr15	65499260	rs143925933	C	T	7266.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:16,290:0.95:306
chr15	65621138	rs11853777	G	A	3899.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.49;ReadPosRankSum=1.394;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:6,160:0.96:166
chr15	65621441	rs12907128	C	A	11719.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.97;ReadPosRankSum=-0.222;SOR=0.560;set=HC	GT:AD:AF:DP	1/1:16,473:0.97:489
chr15	65621857	rs509652	T	C	6834.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr15	65623124	rs3058049	C	CTCTA	3339.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:6,83:0.93:89
chr15	65624228	rs686739	G	C	25378.77	.	AC=2;AF=1.00;AN=2;DB;DP=1022;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,996:1.00:996
chr15	65667724	rs666623	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	65677446	rs116928937	C	A	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr15	65693397	rs667436	T	C	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	65694940	rs36110293	C	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr15	65782451	rs60062953	A	AT	1212.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	65792839	rs11071846	G	A	869.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.74;ReadPosRankSum=1.263;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:3,37:0.93:40
chr15	65804213	rs352478	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	65804537	rs352477	A	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	65822777	rs452306	C	T	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	65822823	rs422390	C	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	65874140	rs71447851	AG	A	4624.25	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:13,142:0.92:155
chr15	65994733	rs17810074	C	T	10242.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.66;ReadPosRankSum=-0.562;SOR=0.657;set=HC	GT:AD:AF:DP	1/1:22,430:0.95:452
chr15	66044604	rs8033741	A	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	66257408	rs333550	T	C	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr15	66274690	rs551474	T	C	5869.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr15	66386853	rs7168565	G	A	5998.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.64;ReadPosRankSum=0.431;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:13,252:0.95:265
chr15	66587581	rs80126717	G	A	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	66612965	rs17851970	T	C	9309.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr15	66644263	rs62627278	T	TA	405.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	66644521	rs9806123	C	G	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr15	66679601	rs112542693	G	C	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	66727689	rs368099654	A	ATT	771.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.68;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	66735551	rs6494573	C	T	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	66745890	rs7169326	G	A	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	66792087	rs112095287	C	T	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	66793480	rs11071895	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	66794298	.	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.483;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr15	66794352	rs74956204	G	A	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	66795980	rs8043062	A	G	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	66806308	rs4238406	C	T	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	66806517	rs4420479	G	A	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	66816183	rs6494579	C	G	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	66820455	rs8033122	T	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	66821146	rs144106132	T	TA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=2.007;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:78,15:0.16:93
chr15	66821174	rs6494580	G	C	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=26.87;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	66821250	rs11071896	A	G	9787.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr15	66857424	.	C	CA	33	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=10;HapScore=3;MGOF=6;MMLQ=25;MQ=60.0;NF=3;NR=1;PP=33;QD=11.25;SC=TTAGTAACTTCAAAAAAAAAA;SbPval=0.74;Source=Platypus;TC=17;TCF=12;TCR=5;TR=4;WE=66857432;WS=66857414;set=Platypus	GT:AD:AF:DP	1/0:13,4:0.24:17
chr15	66956824	rs7178388	A	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	66976149	rs2414910	G	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	67212062	rs79829875	G	A	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr15	67234251	rs266383	A	G	12823.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:1,501:1.00:502
chr15	67391394	rs5813427	GT	G	4396.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=35.75;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	67391497	rs1866319	C	A	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	67430223	rs1866318	T	C	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	67435075	rs745103	G	A	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr15	67457335	rs1065080	A	G	6322.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr15	67457480	rs200305159	T	TC	9157.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:5,205:0.98:210
chr15	67457485	rs2289261	G	C	9470.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:5,221:0.98:226
chr15	67476952	rs2289791	G	T	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	67476970	rs2289790	T	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	67501033	rs2289262	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	67528374	rs7173826	T	G	12762.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,503:1.00:503
chr15	67547301	rs3743347	C	A	23178.77	.	AC=2;AF=1.00;AN=2;DB;DP=918;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,904:1.00:904
chr15	67596815	rs10438290	T	G	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	67652097	rs3743349	G	C	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	67687968	rs4275804	T	C	2178.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.915;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.268;QD=23.94;ReadPosRankSum=-0.105;SOR=0.401;set=HC	GT:AD:AF:DP	1/1:4,87:0.96:91
chr15	67692502	rs7495023	T	C	9035.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr15	67768151	rs3985641	G	C	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr15	67782440	rs10574862	AGGAAAT	A	6551.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	67885058	rs28637534	T	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	67951150	rs12438118	G	T	18454.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.776;ClippingRankSum=0.000;DB;DP=735;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.35;ReadPosRankSum=1.610;SOR=0.229;set=HC	GT:AD:AF:DP	1/1:1,727:1.00:728
chr15	67951228	rs5813451	GA	G	3101.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	67984705	rs4343227	G	A	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	67985931	rs8034680	T	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	68041070	rs8037011	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	68116010	rs28399056	C	A	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	68116400	rs28675295	C	A	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr15	68117300	rs7170185	T	A	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	68118194	rs4776984	A	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	68121428	rs28539889	T	A	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	68121483	rs7183168	A	C	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr15	68122509	rs28587941	T	C	6195.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr15	68346549	rs11855475	T	C	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	68434212	rs113300929	T	TG	551.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr15	68445912	rs11633620	T	A	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	68492028	rs11071986	G	A	10686.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:20,440:0.96:460
chr15	68510770	rs8025947	A	G	1947.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.66;ReadPosRankSum=-0.646;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:5,74:0.94:79
chr15	68522090	rs144971454	GGCGGAGCGGA	G	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:2,20:0.91:22
chr15	68583175	rs6494729	T	C	12731.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr15	68603625	rs898591	C	T	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	68609833	rs1516871	T	C	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	68612385	rs35808090	C	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	68618961	rs2271722	T	C	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	68624175	rs7167822	C	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	68624396	rs7168069	A	C	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	68624641	rs6494733	A	C	22781.77	.	AC=2;AF=1.00;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	1/1:0,884:1.00:884
chr15	68628143	rs2306023	C	T	14893.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr15	68631740	rs2125998	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	68641362	rs61119953	AG	A	2641.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	68649587	rs12907890	G	A	8944.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr15	68656864	rs2306013	A	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr15	68656960	rs2306012	A	G	6775.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr15	68695448	rs4777049	T	C	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:8,132:0.94:140
chr15	68724262	rs2305078	G	C	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	68987315	rs11072043	A	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	68987341	rs7359311	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	69003871	rs3736272	G	T	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:4,140:0.97:144
chr15	69007656	rs1542746	T	G	13425.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,516:1.00:516
chr15	69011389	rs1491640	A	C	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	69011394	rs1491639	C	T	8601.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=1.256;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	69094079	rs12904108	A	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:11,107:0.91:118
chr15	69094158	rs10689979	T	TCA	3050.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:14,128:0.90:142
chr15	69112946	rs4777089	C	A	4287.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.555;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=5.136;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=0.052;QD=23.05;ReadPosRankSum=0.447;SOR=1.696;set=HC	GT:AD:AF:DP	1/1:1,185:0.99:186
chr15	69112971	rs35802209	G	GCA	8240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=2.040;QD=24.60;ReadPosRankSum=0.593;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:47,288:0.86:335
chr15	69325581	rs311893	C	T	16958.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr15	69327825	rs311889	C	T	14080.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:2,549:1.00:551
chr15	69329624	rs2246273	A	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	69347593	rs311905	G	A	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	69349087	rs311906	T	C	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	69553728	rs8023271	C	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr15	69561518	rs3865014	G	A	8333.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr15	69676892	.	A	G	688	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=23;MQ=55.56;NF=27;NR=10;PP=688;QD=19.5343570959;SC=CGTGTTCATCATGGAGGGTGA;SbPval=0.54;Source=Platypus;TC=37;TCF=27;TCR=10;TR=37;WE=69676912;WS=69676882;set=Platypus	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	69676904	.	C	T	952	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=4;HapScore=1;MGOF=19;MMLQ=26;MQ=56.32;NF=34;NR=15;PP=952;QD=20.1381880112;SC=GGAGGGTGAGCGGGCCCTCCG;SbPval=0.48;Source=Platypus;TC=51;TCF=36;TCR=15;TR=49;WE=69676912;WS=69676882;set=Platypus	GT:AD:AF:DP	1/1:2,49:0.96:51
chr15	69676944	.	T	C	1494	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=1;HapScore=1;MGOF=21;MMLQ=23;MQ=59.05;NF=54;NR=30;PP=1494;QD=18.1996572922;SC=GCGGGTCCTCTGTGTTCATGG;SbPval=0.52;Source=Platypus;TC=84;TCF=54;TCR=30;TR=84;WE=69676952;WS=69676934;set=Platypus	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	69683945	rs2242464	C	G	7152.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr15	69684376	rs7183388	G	A	2569.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.265;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.052;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.47;ReadPosRankSum=1.514;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,104:0.99:105
chr15	69684389	rs11634798	A	T	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	69684477	rs58280155	T	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=25.15;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	69684481	rs112633523	AT	A	958.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=20.40;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	69684507	rs11634850	A	G	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.38;QD=25.45;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	69709686	rs3759825	G	A	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	69715488	rs7180624	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr15	69728949	rs3825858	A	G	11117.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:1,437:1.00:438
chr15	69732483	rs4776448	G	A	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	69732736	rs937724	C	T	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	69740350	rs13613	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	69747675	rs1463911	A	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.24;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	69754221	rs8041861	T	C	15171.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.922;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.12;ReadPosRankSum=-0.918;SOR=0.372;set=HC	GT:AD:AF:DP	1/1:2,602:1.00:604
chr15	70347362	rs4777227	C	A	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	70347816	rs11440222	A	AG	963.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	70348468	rs3817045	G	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	70348523	rs2270871	G	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	70350457	rs2291982	C	A	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:18,315:0.95:333
chr15	70358260	rs117133850	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:7,73:0.91:80
chr15	70368432	rs2291986	T	C	8388.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=-0.234;SOR=0.575;set=HC	GT:AD:AF:DP	1/1:7,326:0.98:333
chr15	70388449	rs71149952	AG	A	8304.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr15	70958937	rs2241530	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	70960068	rs934005	G	A	14447.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr15	70971741	.	C	CTAAATAAATAAA	439.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	70991925	rs4776525	G	C	23811.77	.	AC=2;AF=1.00;AN=2;DB;DP=936;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,931:1.00:931
chr15	71125093	rs3825970	G	A	8003.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr15	71125204	rs1549317	A	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	71175296	rs1528828	A	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	71186811	rs1881568	C	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	71193188	rs3830648	A	AAT	121	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	71535458	rs12440013	G	C	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:8,126:0.94:134
chr15	71704320	rs8040015	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr15	72040774	rs1872056	C	T	10543.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=-0.599;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:12,420:0.97:432
chr15	72050163	rs2625533	C	G	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	72073189	rs17811309	G	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:3,46:0.94:49
chr15	72105928	rs11351249	AC	A	12124.73	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr15	72142280	rs71281963	A	ATTTATGAACCCATTCACTAT	1568.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:4,30:0.88:34
chr15	72143855	rs16956328	A	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:8,48:0.86:56
chr15	72152224	rs3214958	CG	C	375.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	72191266	rs2415129	C	T	11764.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr15	72227837	rs2306490	A	G	2229.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.24;ReadPosRankSum=-1.473;SOR=0.666;set=HC	GT:AD:AF:DP	1/1:3,89:0.97:92
chr15	72252189	rs5813671	T	TA	268.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-1.085;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:5,18:0.78:23
chr15	72252498	rs12916951	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	72292115	rs2306488	A	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr15	72300394	rs72731383	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	72302667	rs2200056	T	C	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:6,175:0.97:181
chr15	72302894	rs2957742	G	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.362;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr15	72432583	rs930871	A	G	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr15	72454729	rs897731	C	G	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr15	72457551	rs2959944	A	G	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	72459971	rs35713471	C	A	297.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr15	72462032	.	G	T	3276.77	.	AC=2;AF=1.00;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,126:0.98:128
chr15	72462165	rs11072348	A	C	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	72462350	rs34487006	G	T	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr15	72462831	rs7182776	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.747;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr15	72502141	rs10514	G	A	7938.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:14,324:0.96:338
chr15	72543084	rs713048	G	A	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	72543656	rs2959904	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	72545876	rs1426166	T	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	72546765	rs2912227	A	G	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	72548765	rs12904652	T	C	1316.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.625;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=-0.823;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:1,52:0.98:53
chr15	72556799	rs11072352	G	A	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	72556847	rs12591338	T	A	4509.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.25;ReadPosRankSum=-1.482;SOR=0.597;set=HC	GT:AD:AF:DP	1/1:5,181:0.97:186
chr15	72557955	rs1426170	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	72559243	rs67268368	AAC	A	1968.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:9,49:0.84:58
chr15	72637795	rs4777502	T	C	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr15	72638892	rs1800431	T	C	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	72859047	rs11403578	A	AT	105.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	72859640	.	CT	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.073;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr15	72864578	rs5813687	AT	A	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.966;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-0.046;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:19,60:0.76:79
chr15	72875521	.	G	GT	502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.953;QD=2.20;ReadPosRankSum=1.213;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:171,58:0.25:229
chr15	72879653	rs139334001	A	ATTG	2214.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	72968748	.	G	GT	569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.195;QD=5.00;ReadPosRankSum=2.146;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:65,49:0.43:114
chr15	72987588	rs4777527	G	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	73002035	rs8033604	G	A	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.92;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	73021855	rs6495015	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	73023937	rs12914333	T	C	9621.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr15	73024181	rs9806635	G	A	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr15	73027478	rs2277598	T	C	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	73028375	rs12324395	G	A	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	73044575	rs9460	G	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	73067234	rs11634630	T	C	10430.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr15	73409213	rs3840037	A	AT	678.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-1.882;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,42:0.76:55
chr15	73418741	.	AT	A	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=1.268;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:113,43:0.28:156
chr15	73428204	.	CTT	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=3.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-1.098;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr15	73615097	rs142735148	T	C	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:12,196:0.94:208
chr15	74033033	rs11858458	A	G	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	74043523	rs7497362	A	G	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	74173668	rs7496005	A	G	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:5,184:0.97:189
chr15	74176453	rs66619071	GA	G	5289.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr15	74178605	rs2278864	G	T	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:3,64:0.96:67
chr15	74181255	rs7170803	A	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	74219546	rs1048661	G	T	11354.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.36;ReadPosRankSum=1.261;SOR=0.677;set=HC	GT:AD:AF:DP	1/1:24,462:0.95:486
chr15	74234171	rs8042181	A	G	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	74239307	rs67182653	G	A	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:6,154:0.96:160
chr15	74241749	rs2304722	T	C	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:10,177:0.95:187
chr15	74244278	rs8818	C	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	74336633	rs5742915	T	C	12886.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,489:1.00:489
chr15	74356031	rs2636839	C	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.868;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.94;MQRankSum=2.423;QD=1.26;ReadPosRankSum=2.492;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:249,47:0.16:296
chr15	74472716	rs351242	G	A	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	74473739	rs736118	C	T	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr15	74476340	rs2277608	G	C	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr15	74483415	rs351228	T	C	7191.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr15	74486444	rs974456	C	T	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr15	74489883	rs351218	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	74499956	rs351222	G	C	10208.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:11,407:0.97:418
chr15	74528985	rs351175	T	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	74536285	rs67845844	CA	C	545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.736;QD=6.66;ReadPosRankSum=0.860;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:28,54:0.66:82
chr15	74558927	rs440793	A	G	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	74560566	rs1038436	C	T	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,236:1.00:237
chr15	74572242	rs351165	T	A	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	74572917	rs351164	A	G	2774.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	74588024	rs1484212	T	C	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	74611182	rs751528	A	G	2158.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.22;ReadPosRankSum=0.603;SOR=0.499;set=HC	GT:AD:AF:DP	1/1:2,56:0.97:58
chr15	74611189	rs751527	T	C	2011.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.80;ReadPosRankSum=-0.779;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr15	74659535	rs12442401	A	G	1318.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.625;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=15.122;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.91;ReadPosRankSum=2.882;SOR=4.610;set=HC	GT:AD:AF:DP	1/1:3,46:0.94:49
chr15	74659609	rs28681535	G	T	8060.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:10,328:0.97:338
chr15	74703929	rs741761	T	C	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:13,178:0.93:191
chr15	74709566	rs2075590	T	G	1080.78	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr15	74710593	rs28362912	C	T	14794.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,574:1.00:574
chr15	74865017	rs377466587	CA	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=5.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.335;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr15	74889853	rs145671041	TAC	T	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=1.895;QD=0.56;ReadPosRankSum=0.640;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:144,18:0.11:162
chr15	74907946	rs139096840	A	G	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	74920220	rs116916068	G	A	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:14,207:0.94:221
chr15	75117912	rs79217743	G	T	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:3,162:0.98:165
chr15	75130015	rs11312224	AG	A	10683.73	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:37,383:0.91:420
chr15	75130093	rs12898397	T	C	12134.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.02;ReadPosRankSum=1.310;SOR=0.656;set=HC	GT:AD:AF:DP	1/1:41,510:0.93:551
chr15	75130573	rs2290572	A	G	2932.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.04;ReadPosRankSum=-2.081;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:4,118:0.97:122
chr15	75131661	rs4886615	A	G	6131.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.885;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.308;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.97;ReadPosRankSum=-1.878;SOR=0.584;set=HC	GT:AD:AF:DP	1/1:14,253:0.95:267
chr15	75131959	rs936227	A	G	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:7,180:0.96:187
chr15	75132490	rs12908814	C	G	7434.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:8,288:0.97:296
chr15	75135447	rs2290574	T	C	3396.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.185;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.35;ReadPosRankSum=2.101;SOR=0.534;set=HC	GT:AD:AF:DP	1/1:11,141:0.93:152
chr15	75144543	rs2305667	G	A	7239.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:18,295:0.94:313
chr15	75184029	rs148178720	A	G	296.53	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr15	75189591	rs12593975	G	A	4018.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.331;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.36;ReadPosRankSum=0.877;SOR=0.471;set=HC	GT:AD:AF:DP	1/1:9,163:0.95:172
chr15	75230502	rs6495131	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	75310075	rs12593566	C	A	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr15	75311036	rs2289583	C	A	350.03	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr15	75336729	rs2304899	A	G	25029.77	.	AC=2;AF=1.00;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	1/1:1,955:1.00:956
chr15	75498548	rs1466663	A	G	12886.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,500:1.00:500
chr15	75499602	rs12591506	C	A	20893.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,780:1.00:780
chr15	75499619	rs11072531	T	C	18337.77	.	AC=2;AF=1.00;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr15	75499861	rs11072532	G	A	23241.77	.	AC=2;AF=1.00;AN=2;DB;DP=911;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,891:1.00:891
chr15	75503147	rs3743211	G	A	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr15	75518241	rs1994639	G	C	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.66;QD=50.05;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	75518246	rs1994640	A	G	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.71;QD=34.95;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	75521833	rs6495165	G	C	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr15	75648617	rs5745935	G	A	7538.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.98;ReadPosRankSum=0.599;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:29,314:0.92:343
chr15	75653378	rs7174408	T	C	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	75692303	rs4886699	A	C	13281.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr15	75699523	rs8024276	G	A	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:5,102:0.95:107
chr15	75816458	rs66583490	TA	T	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=7.186;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.775;QD=7.99;ReadPosRankSum=-1.162;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr15	75897646	rs372246427	AT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.780;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.809;QD=1.76;ReadPosRankSum=1.475;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr15	75909803	rs11547316	A	G	6224.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:29,279:0.91:308
chr15	75916931	rs4886719	T	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.42;QD=44.05;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	75916940	rs4886720	T	G	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=42.77;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	75932129	rs13737	G	T	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	75967814	rs1127646	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	75969781	rs11853792	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr15	75977920	rs62027240	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:6,46:0.88:52
chr15	75979782	rs8030131	G	T	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:4,147:0.97:151
chr15	75980112	rs4414463	A	G	15028.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:45,634:0.93:679
chr15	75981507	rs12900539	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:5,55:0.92:60
chr15	75982227	rs78884605	T	G	6747.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:13,169:0.93:182
chr15	75982239	rs148229217	G	A	6783.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:13,169:0.93:182
chr15	76031200	rs8041626	C	T	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	76114318	rs35830282	GA	G	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=3.369;QD=2.33;ReadPosRankSum=-0.310;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:102,58:0.36:160
chr15	76136194	rs2047866	C	T	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	76175828	rs1868020	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	76182949	rs335713	C	T	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	76189624	rs335692	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=24.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	76191644	rs28607641	A	T	97.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	76191802	rs335689	G	A	7813.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr15	76191852	rs335688	T	C	7173.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr15	76191966	rs335687	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	76197071	rs3073843	A	ATCT	1401.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	76222140	rs335679	G	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	76248133	rs202101208	C	CA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.388;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=2.021;QD=4.32;ReadPosRankSum=-1.108;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr15	76248427	rs10711025	GT	G	370.80	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:3,25:0.89:28
chr15	76298132	rs4886755	A	G	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	76496232	rs937732	G	A	18779.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=814;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.98;ReadPosRankSum=1.790;SOR=0.638;set=HC	GT:AD:AF:DP	1/1:26,757:0.97:783
chr15	76496340	rs937733	C	T	11933.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:20,483:0.96:503
chr15	76510073	rs1533600	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	76518346	rs11281932	C	CCCTTA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	76603679	rs62027051	G	C	8180.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.99;ReadPosRankSum=-0.135;SOR=0.637;set=HC	GT:AD:AF:DP	1/1:11,330:0.97:341
chr15	76630717	rs62028361	C	T	11700.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr15	76632907	rs7180257	A	G	8493.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr15	76696768	rs3743175	T	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	76726320	rs16968215	T	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	76957958	rs280021	A	G	155.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	77057864	rs16968467	G	C	8273.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr15	77064389	rs66496622	TGAA	T	671.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	77067123	rs62028737	C	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	77085740	rs3102707	C	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	77197581	rs2277891	C	G	26556.77	.	AC=2;AF=1.00;AN=2;DB;DP=1045;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,1038:1.00:1038
chr15	77197839	rs188260887	G	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	77231158	rs4886841	C	T	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	77236266	rs111558646	AT	A	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.03;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	77240688	rs79796508	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	77241568	rs1711018	T	C	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	77308387	rs7173067	G	A	7452.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr15	77310636	rs3812911	G	C	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	77323009	rs2469237	T	C	4977.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	77323029	rs12903227	C	A	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	77328108	rs11373069	G	GA	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=31.07;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	77406396	rs3743479	C	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	77450964	rs12909704	C	T	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	77907145	rs3743481	G	A	9095.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr15	77907535	rs2271396	C	G	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr15	77907775	rs2271397	T	C	16375.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr15	77907784	rs2271398	G	A	16394.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr15	78189075	rs4569232	G	A	13337.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.97;QD=43.03;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr15	78189084	rs4243062	T	C	12753.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.53;QD=44.44;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr15	78189370	rs4441238	A	C	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	78196212	rs7178928	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.64;QD=26.99;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	78211345	rs12592294	A	G	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	78211393	rs28595390	A	T	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr15	78269731	rs11852862	G	T	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.49;QD=44.11;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	78269737	rs11852790	A	T	3461.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.23;QD=44.96;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	78269738	rs11852821	C	T	3461.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.15;QD=46.16;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	78269747	rs11852867	G	A	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.85;QD=45.25;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	78269760	rs71402931	C	T	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.15;QD=45.30;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	78269762	rs78023616	C	T	2536.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.99;QD=44.50;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	78269763	rs75184028	A	G	2536.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.99;QD=44.50;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	78269793	rs67603081	CT	C	973.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	78269798	rs142983118	G	A	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.84;QD=44.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	78269801	rs140951103	G	A	916.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.06;QD=43.66;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	78269802	rs143146370	T	TG	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.06;QD=43.23;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	78272318	rs12439777	C	G	7556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=835;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-4.386;QD=9.07;ReadPosRankSum=0.308;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:432,401:0.48:833
chr15	78276660	rs12916320	A	G	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	78317863	.	TTTA	T	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.928;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr15	78401540	rs12592068	A	C	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	78403004	rs1992469	A	G	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	78403179	rs2867986	C	G	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	78441769	rs11555541	T	C	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=24.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	78457242	rs12904700	A	G	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.53;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	78457537	rs11394499	C	CT	819.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.452;QD=16.07;ReadPosRankSum=0.049;SOR=0.668;set=HC	GT:AD:AF:DP	1/1:6,45:0.88:51
chr15	78458485	rs3816253	T	C	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	78458797	rs2304825	C	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	78463890	rs11638547	G	T	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	78466127	rs2304824	T	C	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	78466597	rs11631653	C	T	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	78472157	rs370177754	TCA	T	224.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	78473309	rs12915634	G	A	5816.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr15	78474517	rs6495277	T	C	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	78474776	rs66983917	AC	A	15386.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.177;QD=29.25;ReadPosRankSum=0.853;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:2,524:1.00:526
chr15	78501420	rs139633551	C	CCTGT	845.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	78501433	rs3902931	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	78504780	rs10706612	GA	G	4338.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	78519127	.	A	AAT	26	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.4999;HP=4;HapScore=2;MGOF=4;MMLQ=22;MQ=60.0;NF=0;NR=1;PP=26;QD=35.0;SC=CACATAGAAAAATATATATAT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=1;WE=78519135;WS=78519117;set=Platypus	GT:AD:AF:DP	0/1:3,1:0.25:4
chr15	78526556	rs10162606	C	T	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	78556571	rs62007805	G	A	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	78556589	rs12898295	C	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.18;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	78556967	.	A	AGCG	1395.73	.	AC=2;AF=1.00;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	1/1:4,59:0.94:63
chr15	78557005	rs28484827	A	G	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	78557086	rs66489434	GC	G	10440.73	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=29.92;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr15	78558509	rs2037347	G	A	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	78565478	rs7163689	C	T	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	78565616	rs56229935	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	78572359	rs9806426	C	G	7432.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr15	78581892	rs1879153	C	T	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	78581938	rs16969675	C	A	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	78587111	rs138711577	TTTG	T	1779.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	78587743	rs10543486	CT	C	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.593;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.609;QD=8.71;ReadPosRankSum=1.201;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr15	78587910	rs1040262	A	G	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	78632830	rs1127472	C	G	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	78633595	rs2139440	T	G	8664.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr15	78730591	rs954144	C	T	13631.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr15	78758677	rs2958720	G	C	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	78758853	rs2938672	A	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	78777312	rs9788758	G	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	78780104	rs2230940	T	C	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	78786410	rs4887060	A	C	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	78789488	rs13180	C	T	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr15	78807231	.	C	CCTCTCTCTCT	2995	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=1;MGOF=18;MMLQ=25;MQ=57.78;NF=5;NR=8;PP=2995;QD=20;SC=TATCTAAATACCTCTCTCTCT;SbPval=0.79;Source=Platypus;TC=15;TCF=7;TCR=8;TR=13;WE=78807239;WS=78807221;set=Platypus	GT:AD:AF:DP	1/1:2,13:0.87:15
chr15	78807250	.	C	CTCTCTCTCTCTA,CTCTCTCTCTA	490.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=44;set=Intersection	GT:AF:DP	0/1:0.72:39
chr15	78825498	rs12907169	G	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	78825562	rs12906951	C	T	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	78836661	.	C	CT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=2.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.963;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr15	78882134	rs71528533	G	T	7905.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr15	78911261	rs2869547	T	C	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr15	78913067	rs66793222	ACAG	A	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.970;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:350,29:0.08:379
chr15	79044330	rs11632672	A	G	162.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	79045517	rs34816637	G	A	8098.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.71;QD=44.50;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	79045521	rs12917502	T	C	8163.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.09;QD=44.86;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	79054900	rs7495616	C	G	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	79056526	rs3830240	TC	T	337.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	79058572	rs1809421	T	G	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	79058923	rs1809422	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=24.82;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	79059449	rs1810165	G	A	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.42;QD=26.73;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	79060367	.	GGGGGTGGGGAGTTGGCGGGGGAT	G	385.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.035;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=2.441;QD=21.43;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr15	79065380	rs7177201	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.00;QD=42.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	79065384	rs28577997	G	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.11;QD=42.65;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	79065394	rs3743061	T	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.72;QD=43.14;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	79065557	rs28450923	A	G	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	79069734	rs7161774	G	T	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	79089074	rs61752773	C	T	8351.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr15	79132814	rs7402877	T	C	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.480;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	79133026	rs6495341	C	T	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	79165441	rs8034658	G	T	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	79173005	rs17832351	A	G	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	79215568	rs34577742	C	T	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr15	79217690	rs2044226	G	C	14642.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,582:1.00:582
chr15	79231518	rs11638844	A	G	7120.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;MQRankSum=-0.054;QD=41.64;ReadPosRankSum=1.489;SOR=0.263;set=HC	GT:AD:AF:DP	1/1:1,170:0.99:171
chr15	79231523	rs35398112	G	GA	2940.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.357;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;MQRankSum=-0.451;QD=18.27;ReadPosRankSum=1.463;SOR=0.647;set=HC	GT:AD:AF:DP	1/1:15,146:0.91:161
chr15	79231616	rs10400902	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	79237180	rs1036937	C	A	15279.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,589:1.00:589
chr15	79237247	rs1036938	C	G	16272.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=1.744;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:2,620:1.00:622
chr15	79237324	rs1036939	C	A	5583.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	79237405	rs28704487	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr15	79254480	rs4778732	T	A	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	79264097	rs4238514	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	79265866	rs3743195	G	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	79273098	rs2278650	C	G	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	79277150	rs3840034	A	AC	4021.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	79277247	rs4778750	A	C	11569.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr15	79277298	rs3803544	T	C	12856.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr15	79277511	rs2230518	A	G	11127.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:1,434:1.00:435
chr15	79277608	rs4778751	G	A	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	79288011	rs6495359	A	C	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr15	79296172	rs1562008	G	A	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr15	79324419	rs2304991	A	G	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	79327686	rs736554	C	T	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	79502096	rs12903401	G	C	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr15	79606137	rs3825933	G	A	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	79606408	rs3784544	C	T	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	79614206	rs906440	T	A	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	79614418	rs906439	A	G	14287.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr15	80365745	rs2866367	T	G	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	80367831	rs2469600	G	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	80405098	rs12594035	C	G	13131.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr15	80413935	rs934003	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	80414173	rs1522636	C	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	80450328	rs1370276	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.72;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	80450389	rs1370275	G	A	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	80452075	rs1370274	T	C	8916.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr15	80452268	rs1370273	G	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	80452886	rs733679	T	G	6360.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr15	80454745	rs2114716	T	C	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	80460524	rs1545119	A	G	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=25.79;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr15	80460576	.	G	GT	680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.662;QD=3.23;ReadPosRankSum=2.351;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:140,71:0.34:211
chr15	80464669	rs7180031	A	G	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr15	80465248	rs58363292	GA	G	4860.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	80470040	rs2162550	G	A	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	80472431	rs2043691	C	A	8984.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr15	80736696	.	G	GGT,GGTGT	1763.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=3.058;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.000;QD=26.32;ReadPosRankSum=1.700;SOR=0.752;set=HC	GT:AD:AF:DP	1/2:10,18,39:0.27,0.58:67
chr15	80762526	rs5814026	TC	T	6053.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=28.69;SOR=1.478;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	80806183	rs11072922	T	C	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	80845136	rs3924894	CT	TC	10899.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr15	80889664	rs117317859	C	T	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	80987812	rs62007944	T	C	8995.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr15	81179926	rs2271159	G	T	4571.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	81199236	rs2271164	A	G	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	81212521	rs2271160	T	C	22119.77	.	AC=2;AF=1.00;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	1/1:1,857:1.00:858
chr15	81212608	rs1553647	G	A	15207.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,593:1.00:593
chr15	81221492	rs35092028	C	T	5072.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	81234741	rs1553646	C	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	81427575	rs12900447	A	G	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	81430287	rs60867938	C	CA	164.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	81440147	rs11395672	C	CA	521.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-0.259;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:11,31:0.74:42
chr15	81587757	rs17875496	T	A	8257.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr15	81591639	rs4778636	G	A	7227.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr15	81592802	rs11073001	A	G	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	81592891	rs11630277	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.06;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	81595827	rs57763246	C	T	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr15	81598110	rs17875532	C	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	81598225	rs17875533	C	A	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	81598269	rs11556218	T	G	10452.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:1,413:1.00:414
chr15	81598416	rs1803275	G	A	9593.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:1,368:1.00:369
chr15	81600451	rs4778639	T	G	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr15	81600995	rs4238526	A	G	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	81610592	rs4503751	A	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	81610902	rs4617815	T	C	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	81631900	rs34384568	G	T	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr15	81637357	.	GGA	G	76	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=3;HapScore=2;MGOF=41;MMLQ=26;MQ=60.14;NF=0;NR=4;PP=76;QD=20.5;SC=CATTTCCTGGGGAGAGAGAGA;SbPval=1.0;Source=Platypus;TC=20;TCF=2;TCR=18;TR=4;WE=81637366;WS=81637347;set=Platypus	GT:AD:AF:DP	0/1:16,4:0.20:20
chr15	81638646	rs35379895	G	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	81654757	rs5814058	T	TG	2422.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	81665211	rs71708360	CGT	C	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.036;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr15	82335444	rs11073028	G	A	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.75;SOR=3.209;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	82387951	rs1969090	G	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	82512429	rs2292189	C	G	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	82523358	rs11073036	G	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	82523405	rs12324875	A	G	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	82530630	rs1972460	A	G	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	82544927	rs3902959	C	T	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	82545214	rs4344697	A	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	82555242	rs11631813	A	G	24322.77	.	AC=2;AF=1.00;AN=2;DB;DP=951;set=Intersection	GT:AD:AF:DP	1/1:0,943:1.00:943
chr15	82558034	rs3858954	G	C	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;MQ=54.75;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	82563991	rs16973457	C	T	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	82574879	rs11630197	T	C	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	83215251	rs1267657	T	C	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr15	83224696	rs1145171	C	T	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	83230904	rs66642827	CT	C	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.542;QD=2.10;ReadPosRankSum=-1.567;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:110,51:0.32:161
chr15	83240293	rs783544	A	C	4690.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.868;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.214;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=-0.924;SOR=0.566;set=HC	GT:AD:AF:DP	1/1:3,187:0.98:190
chr15	83241984	rs11336258	AT	A	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.534;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.173;QD=1.41;ReadPosRankSum=-1.689;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:78,27:0.26:105
chr15	83297138	rs10400906	C	T	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr15	83438317	.	C	CA	25	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.4999;HP=12;HapScore=2;MGOF=14;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=25;QD=15.5;SC=GGACTCATCTCAAAAAAAAAA;SbPval=0.74;Source=Platypus;TC=8;TCF=4;TCR=4;TR=2;WE=83438325;WS=83438308;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr15	83561606	rs41310978	A	G	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr15	83657587	.	CA	CAA,C	57	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.58;FR=0.4991,0.5009;HP=16;HapScore=4;MGOF=145;MMLQ=28;MQ=60.0;NF=0,0;NR=4,4;PP=22,57;QD=6.25;SC=GACCCTGTCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4,4;WE=83657596;WS=83657577;set=Platypus	GT:AF:DP	0/1:1.00:4
chr15	83677270	.	C	CA	1710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=4.955;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.453;QD=11.88;ReadPosRankSum=2.045;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:31,113:0.78:144
chr15	83680287	rs4842860	A	G	10615.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:2,418:1.00:420
chr15	84257351	rs7182482	G	A	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	84373319	rs3079595	C	CAG	3075.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.88;QD=43.32;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	84473531	rs7179507	G	A	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	84657639	.	A	AT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.947;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=1.884;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr15	84659798	rs376147364	G	A	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr15	84749820	rs139071720	TTTA	T	4124.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	84753177	rs12437525	A	G	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	84950069	.	C	CGGTGGGGGTGGG	233.77	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.25;QD=58.44;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	84950209	rs10152249	T	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.19;QD=27.59;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	85149771	rs2271433	G	T	6347.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr15	85159397	rs10083683	C	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	85163998	rs2044502	G	C	7889.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr15	85175102	rs2121452	G	A	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr15	85186637	rs510875	G	C	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	85188994	rs2271432	T	C	22044.77	.	AC=2;AF=1.00;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	1/1:1,862:1.00:863
chr15	85191274	rs7169629	C	G	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr15	85198362	rs1107179	G	T	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	85200754	rs2292462	G	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	85235757	rs12900890	C	T	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	85259053	rs6496355	C	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	85333953	rs2241645	A	G	13898.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr15	85341859	rs8182086	G	A	21837.77	.	AC=2;AF=1.00;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	1/1:0,842:1.00:842
chr15	85341877	.	A	G	18097.77	.	AC=2;AF=1.00;AN=2;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr15	85360004	rs55736017	A	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	85360101	rs11857356	T	C	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr15	85370597	rs891286	C	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	85382193	rs1896864	C	A	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	85382307	rs34407151	G	A	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr15	85383839	rs3803406	G	A	10439.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr15	85401259	rs306197	C	T	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr15	85401419	rs167379	T	C	9276.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr15	85403340	rs2289140	C	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	85407564	rs2289138	A	C	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	85438397	rs8187753	A	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	85447431	rs2290272	G	A	9744.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr15	85448684	rs2290270	G	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	85448875	rs8187758	C	A	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr15	85448992	rs67047009	G	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	85451852	rs4980349	T	C	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	85452095	rs2305365	C	T	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	85461851	rs8187763	C	T	9917.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr15	85467207	rs3825875	T	C	12133.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=1.099;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:2,475:1.00:477
chr15	85469711	rs2343674	G	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	85478153	rs7163966	G	T	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	85478410	rs2242048	A	G	11674.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr15	85478729	rs2242046	G	A	9877.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr15	85487960	rs11479919	GC	G	29689.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=913;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.136;QD=33.70;ReadPosRankSum=2.339;SOR=0.110;set=HC	GT:AD:AF:DP	1/1:2,879:1.00:881
chr15	85488572	rs8025045	T	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	85659150	rs71466073	C	CA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.641;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:102,29:0.22:131
chr15	85666568	.	T	TACAC	228.75	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.12;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	86029097	rs11856869	C	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	86064909	rs1483581	T	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	86087212	rs7162720	C	T	17755.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,682:1.00:682
chr15	86087309	rs2291049	T	C	12547.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:2,492:1.00:494
chr15	86368835	rs4627292	A	G	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	86368898	rs4414449	G	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	86368922	rs76468441	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.71;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	86368959	rs4577031	A	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	86768264	rs34786229	C	CT	1176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.606;QD=8.98;ReadPosRankSum=-0.056;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:49,82:0.63:131
chr15	86822823	rs183887714	C	G	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	87089408	rs76478371	T	C	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	87097468	rs9788743	T	C	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	87099537	rs752270	T	C	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	87217613	rs8028043	A	G	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	87531281	rs1006030	A	C	4451.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.73;ReadPosRankSum=0.175;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:2,178:0.99:180
chr15	88423463	rs1560975	C	T	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.532;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	88576185	rs2229910	G	C	8758.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr15	88669382	rs3825882	G	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	88679785	rs1863480	G	A	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	89056040	rs13835	C	A	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	89071124	rs34611303	A	AAAC	1112.37	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr15	89169858	rs8027765	A	G	17724.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,696:1.00:696
chr15	89172352	rs3826040	C	T	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	89172558	rs3743475	G	C	16933.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,648:1.00:648
chr15	89173556	rs17777460	C	T	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	89173657	rs3826038	A	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	89174509	rs11559060	C	T	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	89182596	rs3200942	A	G	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr15	89193497	rs12595827	A	T	10416.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr15	89193584	rs8041679	G	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	89195245	rs59188950	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	89195526	rs1137166	A	G	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr15	89385151	rs2293087	T	G	7207.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr15	89386543	rs11324188	AG	A	3548.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=31.13;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	89386652	rs34949187	G	A	10011.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr15	89390434	rs12911138	G	A	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	89391160	rs2272023	C	A	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr15	89392745	rs1568116	T	C	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr15	89398105	rs2351491	C	T	10486.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr15	89398330	rs3743399	G	A	22959.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.534;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.39;ReadPosRankSum=1.319;SOR=0.253;set=HC	GT:AD:AF:DP	1/1:1,869:1.00:870
chr15	89398605	rs938608	G	T	13847.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr15	89398631	rs938609	T	A	12828.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr15	89400339	rs2882676	A	C	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	89401109	rs4932439	A	G	9875.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr15	89401615	rs3825994	T	G	8930.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr15	89402051	rs1042630	A	G	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	89402239	rs1042631	T	C	11912.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr15	89402596	rs698621	T	G	14037.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,529:1.00:529
chr15	89417238	rs1126823	A	G	6172.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr15	89417629	rs2280465	G	A	9587.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr15	89421327	rs2280463	A	G	13914.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.083;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.48;ReadPosRankSum=-0.659;SOR=0.389;set=HC	GT:AD:AF:DP	1/1:3,543:0.99:546
chr15	89421405	rs7182726	G	A	16130.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,613:1.00:613
chr15	89422286	rs3809574	C	T	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:2,219:0.99:221
chr15	89423749	rs875024	G	A	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	89424022	rs55782943	A	T	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	89424581	rs938605	A	G	7988.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr15	89430506	rs3743395	C	T	5191.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	89436244	rs8024779	T	C	10992.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr15	89436295	rs8039131	G	A	16217.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:1,632:1.00:633
chr15	89444760	rs2015495	T	C	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	89449137	rs3743388	C	G	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr15	89450546	rs1878327	C	T	13002.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr15	89450587	rs1878326	G	T	9922.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr15	89456306	rs35936125	C	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	89456356	rs3743387	G	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	89456544	rs4945	G	T	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	89734466	rs2239287	G	A	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	89758552	rs4932483	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	89816742	.	TAA	T	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=-0.000;DP=55;ExcessHet=3.0103;FS=18.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.26;ReadPosRankSum=1.357;SOR=1.969;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr15	89817689	rs11073853	G	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	89821837	.	T	C	1078.77	.	AC=2;AF=1.00;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	89838236	rs7183618	G	A	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	89856047	rs11321073	TA	T	190.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;QD=14.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	89870432	rs113994095	C	T	15282.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,591:1.00:591
chr15	90029828	rs4032797	A	T	884.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=20.11;ReadPosRankSum=2.335;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,32:0.73:44
chr15	90029830	rs28385443	A	T	1774.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;MQRankSum=0.000;QD=34.80;ReadPosRankSum=2.510;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:3,48:0.94:51
chr15	90119614	rs11855211	G	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	90126121	rs10775247	C	T	8734.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr15	90127775	rs117209589	C	T	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	90128799	rs893724	T	A	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	90128834	rs11639246	G	A	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	90128966	rs11629584	C	T	14143.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr15	90129188	rs1540504	T	C	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	90129227	rs1540503	A	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	90135172	rs35892197	C	T	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	90135196	rs8041127	A	G	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	90135432	rs34494298	A	G	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	90138670	rs8042146	C	T	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	90144851	rs4932233	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	90144894	rs4932234	T	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.72;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	90144944	rs4244876	G	A	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	90161355	rs2289486	G	A	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr15	90168108	rs894157	C	T	10169.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:2,392:0.99:394
chr15	90172133	rs12914042	C	G	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	90172419	rs143394914	GGGGTGGGGGCTGTGGGCTGGGT	G	1883.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	90172778	rs142032413	G	C	18249.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.35;ReadPosRankSum=-0.322;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:10,710:0.99:720
chr15	90173734	rs35820949	C	CAG	1368.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	90174789	rs9672286	C	T	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr15	90174824	rs12900805	C	T	6524.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr15	90174955	rs9672296	C	T	6074.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr15	90176073	rs3803530	C	A	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	90176239	.	T	TAGGGAGGGAGGGAGGG	5200.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DP=532;ExcessHet=3.0103;FS=1.994;MLEAC=2;MLEAF=1.000;MQ=59.84;MQRankSum=-0.205;QD=28.42;ReadPosRankSum=-1.419;SOR=1.334;set=HC	GT:AD:AF:DP	1/1:4,179:0.98:183
chr15	90176432	rs3803531	T	G	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr15	90177159	rs11633151	C	T	11263.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr15	90188514	rs894159	A	G	7942.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr15	90190048	rs1110060	A	G	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	90191827	rs8037349	T	C	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	90192905	rs4932240	T	C	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	90195712	rs11634571	G	A	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	90195765	rs11630003	AA	GG	16225.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr15	90195967	rs8179066	C	G	11137.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,426:1.00:426
chr15	90210437	rs4032998	C	A	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	90211047	rs894162	A	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	90213134	rs2304794	T	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	90213229	rs6496589	G	C	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr15	90214643	rs192726157	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	90214948	rs1077903	C	A	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	90226947	rs7169981	C	A	5769.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr15	90281045	rs11638276	C	G	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	90320120	rs200021459	GAGGGGCAGGGGCAAGGGCAGGGGC	G	2256.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr15	90328551	rs10584	G	C	6656.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr15	90328774	rs71464487	A	AAC	4162.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	90333616	rs8192299	T	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	90333654	rs8192298	A	T	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	90333980	rs1992250	A	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	90334240	rs25654	A	G	8686.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr15	90334345	rs7168329	C	G	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	90334415	rs7169161	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	90335379	rs8179197	G	C	8507.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr15	90335534	rs25652	G	A	18770.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,731:1.00:731
chr15	90335788	rs25651	C	T	10348.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr15	90336373	rs16943605	T	C	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	90340719	rs893615	G	A	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	90340725	rs3934	A	C	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.47;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	90346861	rs2305443	C	T	16021.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.460;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.97;ReadPosRankSum=1.265;SOR=0.274;set=HC	GT:AD:AF:DP	1/1:1,616:1.00:617
chr15	90349558	rs25653	C	T	12014.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr15	90393808	rs4932252	G	C	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	90393949	rs11435035	C	CT	762.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=16.23;ReadPosRankSum=-0.487;SOR=0.487;set=HC	GT:AD:AF:DP	1/1:5,42:0.89:47
chr15	90414642	rs3759831	C	G	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	90420673	rs12440156	G	A	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	90455940	rs1256836	G	C	7587.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr15	90634941	rs10852126	A	G	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,188:0.99:189
chr15	90784207	rs7166441	A	G	8875.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr15	90809633	rs9635390	G	A	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr15	90814570	.	G	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-0.219;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:121,21:0.15:142
chr15	90976811	rs67352281	TGAATGCCACCGATGTTTTCTAA	T	3644.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	91017232	rs1145325	G	A	10109.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr15	91040725	rs2301832	A	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	91043192	rs72311245	ATGTTTTGTTT	A	2201.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	91083353	rs8033595	G	A	9157.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr15	91141810	rs7180867	A	C	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	91169004	.	T	C	5653.77	.	AC=2;AF=1.00;AN=2;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	91181567	rs6496717	C	T	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	91290467	.	CAAA	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=11.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.806;SOR=2.225;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr15	91294897	rs7183841	T	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	91312313	rs17273206	G	A	7056.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:1,276:1.00:277
chr15	91312823	rs3815003	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	91337479	rs2227933	G	A	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	91337623	rs3214113	AT	A	163.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.19;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	91341599	rs17273842	T	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	91346923	rs2227934	C	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	91354505	rs1063147	C	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	91358271	rs10685387	G	GGAA	2984.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	91419432	rs11372849	T	TC	4594.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	91422543	rs8039305	T	C	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	91423543	rs6224	G	T	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	91424574	rs6226	G	C	36311.77	.	AC=2;AF=1.00;AN=2;DB;DP=1395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,1381:1.00:1381
chr15	91430436	rs2071383	T	C	26065.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.928;ClippingRankSum=0.000;DB;DP=1031;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=0.598;SOR=0.226;set=HC	GT:AD:AF:DP	1/1:1,1020:1.00:1021
chr15	91430647	rs28438927	A	C	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	91479412	.	T	TC	43940.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DP=1590;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.106;QD=29.69;ReadPosRankSum=-0.192;SOR=0.617;set=HC	GT:AD:AF:DP	1/1:7,1473:1.00:1480
chr15	91524841	rs7172758	G	T	13334.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr15	91544539	.	C	CA	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.700;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:102,39:0.28:141
chr15	91795758	rs16945457	A	C	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	91835464	rs149060025	A	T	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	92397106	rs368016879	AGCG	A	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.206;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:214,23:0.10:237
chr15	92432263	.	C	CA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.41;ReadPosRankSum=-0.191;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr15	92638193	rs2286355	G	A	7138.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr15	92638326	.	GCCTCT	G	1658.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	92638331	.	T	TGAG	1658.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	92638332	.	GT	G	726	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=2;HapScore=2;MGOF=9;MMLQ=28;MQ=60.0;NF=0;NR=17;PP=726;QD=45.2352941176;SC=CCCTGCCTCTGTAGCTGGGGC;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=17;WE=92638340;WS=92638317;set=Platypus	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	92638333	.	T	TG	1658.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.39;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	92647645	rs1517618	G	C	21258.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,818:1.00:818
chr15	92647834	rs917355	A	G	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	92663630	rs6496893	A	G	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	92714879	rs2240589	C	T	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	92715131	rs2270061	A	T	4443.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr15	92715167	rs2270060	C	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	92937268	rs3743365	G	T	8131.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.43;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	92937276	rs3743364	C	T	9297.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.78;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr15	92977670	rs2242113	T	G	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	93015427	rs1455773	G	A	5156.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	93016049	rs145499675	C	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	93016128	rs13380006	C	T	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	93043545	rs7178722	T	G	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr15	93198671	rs501381	A	G	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr15	93198678	rs68056278	TTGGAGC	T	7842.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	93198784	rs2438194	A	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	93306459	rs56099640	G	A	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	93306602	rs11634113	TG	CA	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.45;QD=45.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	93515439	rs62023144	G	A	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	93563661	rs964034	G	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	93567526	rs28558199	G	A	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	93588264	rs4299103	G	C	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	93588336	rs4238485	A	C	10871.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr15	93595855	rs1997382	T	C	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	93609460	rs11074135	A	T	6344.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr15	93609617	rs4778090	A	G	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chr15	93616283	rs112633977	A	AAGG	11489.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=43.69;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr15	94410009	rs11857265	C	T	52.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	94410296	rs12908831	A	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	94841991	rs370876212	GTC	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.263;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:39,6:0.13:45
chr15	94883599	rs10152496	T	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	94884108	rs8025851	G	C	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	94942497	rs2289009	T	C	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	94945121	rs117867468	A	T	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	94945324	rs6497203	G	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	94945698	rs146859566	A	G	7289.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr15	94945719	rs7178698	G	T	9975.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.975;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=3.216;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=0.863;SOR=0.382;set=HC	GT:AD:AF:DP	1/1:1,389:1.00:390
chr15	96876611	rs7173047	T	A	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	96880510	rs3833035	ATTC	A	1020.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=39.26;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	98301845	rs2048115	C	T	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	98302002	rs143322276	TAAC	T	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	98462701	rs58934940	AG	CC	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	98504100	rs4965046	G	C	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	98504322	rs112100339	C	T	5191.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	98504326	rs12101554	A	G	5201.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	98512622	rs5814833	CT	C	1529.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:10,89:0.90:99
chr15	98513845	rs2130882	T	C	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	98514282	rs62023730	A	G	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr15	98514489	rs3803385	A	G	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	98995052	rs56374714	G	GT	14829.73	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr15	98995081	rs12101356	A	G	16863.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=26.06;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr15	99192754	.	CTTTTTTTT	C	4485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.096;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=10.501;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=18.23;ReadPosRankSum=2.425;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:84,162:0.66:246
chr15	99192779	.	GA	G	2206	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=20;HapScore=1;MGOF=27;MMLQ=28;MQ=59.17;NF=43;NR=27;PP=2206;QD=32.0142857143;SC=TTTTTTTTTTGAGAAAGGGGA;SbPval=0.07;Source=Platypus;TC=146;TCF=67;TCR=79;TR=70;WE=99192787;WS=99192769;set=Platypus	GT:AD:AF:DP	0/1:76,70:0.48:146
chr15	99251356	rs7174918	C	T	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr15	99456253	rs2272037	T	C	3567.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:173,179:0.51:352
chr15	99456553	rs951715	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr15	99465473	rs3743262	C	T	4863.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:268,250:0.48:518
chr15	99467934	rs1464430	A	C	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:84,52:0.38:136
chr15	99477911	rs2715449	T	G	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	99478493	rs10400894	T	C	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	99478505	rs34389972	A	AC	1864.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	99492045	rs2684789	G	A	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:90,71:0.44:161
chr15	99492061	rs17847195	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:62,41:0.40:103
chr15	99500256	rs2593053	G	A	12182.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr15	99511793	rs1521484	C	G	14366.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr15	99511804	rs5814919	A	AC	19053.73	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr15	99514432	rs201352743	GGGGGGGGT	G	661.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=-1.987;QD=4.01;ReadPosRankSum=0.459;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:120,45:0.27:165
chr15	99514433	rs199603902	GGGGGGGT	G	2187.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=2.426;QD=13.67;ReadPosRankSum=-1.025;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:57,103:0.64:160
chr15	99544429	rs2593051	G	A	12386.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr15	99645978	.	G	T	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.400;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:97,38:0.28:135
chr15	99646107	rs60530833	A	AG	1457.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	99653666	rs2305446	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr15	99653800	rs2305445	T	C	2889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.213;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:328,173:0.35:501
chr15	99670989	rs3743248	T	C	3100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.423;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:506,201:0.28:707
chr15	99671760	rs260087	T	C	2583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.681;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:296,150:0.34:446
chr15	99672722	rs2292288	A	G	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:365,163:0.31:528
chr15	99701857	rs3803472	A	G	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:231,135:0.37:366
chr15	99715352	rs2602016	A	G	2300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-1.705;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:360,151:0.30:511
chr15	99762041	rs78534478	C	T	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:102,175:0.63:277
chr15	99798934	rs7162949	G	A	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:158,75:0.32:233
chr15	99799750	rs1976589	T	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:215,97:0.31:312
chr15	100230908	rs325385	T	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	100243487	rs34131461	GT	G	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=2.297;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:107,40:0.27:147
chr15	100243672	rs3730281	G	A	2420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.629;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:52,110:0.68:162
chr15	100246834	rs325409	T	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	100246936	rs325408	T	C	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=0.624;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:188,92:0.33:280
chr15	100246942	rs325407	G	A	9645.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.52;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr15	100251015	rs325403	C	G	11054.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr15	100252703	rs3730059	G	A	14260.77	.	AC=1;AF=0.500;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	0/1:332,659:0.66:991
chr15	100252709	rs373652230	CCAG	C	8875.73	.	AC=1;AF=0.500;AN=2;DB;DP=1025;set=Intersection	GT:AD:AF:DP	0/1:351,447:0.56:798
chr15	100252741	.	AGCC	A	3238.73	.	AC=1;AF=0.500;AN=2;DP=975;set=Intersection	GT:AD:AF:DP	0/1:640,230:0.26:870
chr15	100252805	rs325400	G	T	3826.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:451,218:0.33:669
chr15	100269309	rs6598263	T	G	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	100269635	rs72760587	G	C	10644.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:221,472:0.68:693
chr15	100269737	rs8041078	G	A	13168.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:91,597:0.87:688
chr15	100269749	rs8041089	G	A	11882.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:68,550:0.89:618
chr15	100269796	rs6598264	A	G	12917.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr15	100271253	rs12185079	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:87,59:0.40:146
chr15	100271757	rs8033612	C	T	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-0.708;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:32,53:0.62:85
chr15	100271821	rs8032484	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr15	100272337	rs73466515	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.18;ReadPosRankSum=-0.000;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	100331253	rs1060457	G	A	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:243,129:0.35:372
chr15	100331819	rs2958994	A	G	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:185,119:0.39:304
chr15	100332799	rs11639102	A	C	3839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.227;ClippingRankSum=0.000;DB;DP=1215;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-32.798;QD=3.18;ReadPosRankSum=11.004;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:1037,171:0.14:1208
chr15	100332807	rs11633999	C	T	3873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.176;ClippingRankSum=0.000;DB;DP=1219;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-32.011;QD=3.20;ReadPosRankSum=11.311;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:1039,173:0.14:1212
chr15	100332919	rs2603217	T	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:306,93:0.23:399
chr15	100332989	rs62040187	C	A	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=6.406;MLEAC=1;MLEAF=0.500;MQ=46.86;MQRankSum=-5.921;QD=1.88;ReadPosRankSum=-3.445;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:193,40:0.17:233
chr15	100339897	rs12910401	T	C	2527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-9.055;QD=4.32;ReadPosRankSum=0.564;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:418,167:0.29:585
chr15	100339938	rs12905599	C	T	2318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-11.146;QD=5.14;ReadPosRankSum=-1.345;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:356,95:0.21:451
chr15	100339960	rs12904401	G	A	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-11.370;QD=4.94;ReadPosRankSum=-4.469;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:296,65:0.18:361
chr15	100353107	rs8037668	T	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-1.709;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr15	100514561	rs2581340	G	C	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:60,89:0.60:149
chr15	100514614	rs2573652	T	C	5800.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:215,266:0.55:481
chr15	100516472	rs11634977	G	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:50,49:0.49:99
chr15	100533218	rs7175995	C	T	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:112,74:0.40:186
chr15	100533279	.	C	T	4521.77	.	AC=1;AF=0.500;AN=2;DP=563;set=Intersection	GT:AD:AF:DP	0/1:309,235:0.43:544
chr15	100537494	rs12900132	C	T	4145.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:192,201:0.51:393
chr15	100589056	rs8028251	T	C	3038.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:224,160:0.42:384
chr15	100591992	rs4965569	A	T	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:141,116:0.45:257
chr15	100592021	rs62041049	C	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:98,79:0.45:177
chr15	100594271	rs28529328	G	A	3974.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:199,192:0.49:391
chr15	100594299	rs28587358	G	C	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:114,128:0.53:242
chr15	100603776	rs6598297	T	A	4262.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:217,211:0.49:428
chr15	100603987	rs34229918	A	G	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:220,190:0.46:410
chr15	100604020	rs61344232	G	A	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:120,93:0.44:213
chr15	100636586	rs4965583	G	A	5136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=0.662;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:253,258:0.50:511
chr15	100649465	rs142688382	C	CCAGCTCCTCTAAACACGCGGCA	1574.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	100649473	rs75158695	C	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	100649512	rs35121839	A	T	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	100672237	rs12907333	T	G	25851.77	.	AC=2;AF=1.00;AN=2;DB;DP=1013;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,999:1.00:999
chr15	100692782	rs7162227	C	G	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:114,124:0.52:238
chr15	100692845	rs28567966	A	G	6863.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:439,367:0.46:806
chr15	100693032	rs372937234	CT	C	778.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.161;QD=7.56;ReadPosRankSum=1.579;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:46,57:0.55:103
chr15	100695347	rs8024690	T	C	3353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.102;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:158,172:0.52:330
chr15	100794172	rs7172834	T	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr15	100794363	rs4369638	C	T	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:196,185:0.49:381
chr15	100801698	rs4965613	G	A	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:165,180:0.52:345
chr15	100801965	rs6598316	G	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr15	100802495	rs4965296	G	A	3589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.04;ReadPosRankSum=1.770;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:107,92:0.46:199
chr15	100802499	rs4965297	A	G	3617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.23;ReadPosRankSum=1.166;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:112,98:0.47:210
chr15	100889442	rs4965642	A	G	4588.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:194,225:0.54:419
chr15	100889496	rs2289584	T	G	5102.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:257,255:0.50:512
chr15	100942843	rs1023782	G	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr15	100942962	rs2439928	T	C	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr15	100996038	rs12595207	C	T	5768.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:350,300:0.46:650
chr15	100996076	rs11323964	AT	A	13206.73	.	AC=1;AF=0.500;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	0/1:417,470:0.53:887
chr15	101009474	rs34108242	A	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr15	101009530	rs12909732	G	A	2006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-0.052;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:85,101:0.54:186
chr15	101019529	rs2654574	C	T	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	101019819	rs2587763	G	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	101041896	rs1354332	T	C	4323.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:242,221:0.48:463
chr15	101041921	rs60405735	T	C	6559.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:290,327:0.53:617
chr15	101109358	rs28438569	A	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	101109677	rs8451	C	A	21800.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.428;ClippingRankSum=0.000;DB;DP=843;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.23;ReadPosRankSum=-1.208;SOR=0.285;set=HC	GT:AD:AF:DP	1/1:1,830:1.00:831
chr15	101109794	rs12157	C	G	16715.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr15	101109818	rs12460	G	A	14410.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr15	101109893	rs6598356	C	A	8054.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr15	101110265	rs2411836	T	A	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	101110302	rs2411837	C	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:77,47:0.38:124
chr15	101110356	rs2411838	T	C	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	101110372	rs3084804	AAC	A	1157.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr15	101112342	rs1493652	T	C	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	101113700	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.75;ReadPosRankSum=0.139;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	101113748	rs2062816	C	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	101113862	rs12719734	C	T	6035.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	101113950	rs12592868	A	G	15334.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr15	101114418	rs8039437	G	A	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	101115448	rs4965678	C	A	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	101120963	rs11247226	T	C	9013.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr15	101152745	rs4965683	A	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	101425703	rs4646656	T	C	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr15	101427998	rs4646660	A	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr15	101440988	rs4646674	A	C	10155.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr15	101441055	rs4646675	T	C	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	101445815	rs3803430	A	G	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=0.120;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:68,58:0.46:126
chr15	101447588	rs4646684	A	G	4995.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr15	101448783	rs4646687	G	A	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:127,135:0.52:262
chr15	101455009	rs4646690	G	C	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:107,126:0.54:233
chr15	101513965	rs56221518	G	A	84.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.15;ReadPosRankSum=-0.967;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr15	101527096	rs1551466	G	C	4414.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:215,210:0.49:425
chr15	101527635	rs7176015	G	A	7865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=977;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=1.570;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:544,427:0.44:971
chr15	101529118	rs4357923	C	T	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:46,42:0.48:88
chr15	101529413	rs57713827	T	TCTC	2239.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.974;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=64.28;MQRankSum=10.882;QD=17.10;ReadPosRankSum=2.842;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:74,57:0.44:131
chr15	101529414	rs57020487	A	T	2248.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.500;MQ=64.13;MQRankSum=10.614;QD=16.54;ReadPosRankSum=3.117;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:76,60:0.44:136
chr15	101529414	.	AG	CG	1837	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=1;MMLQ=27;MQ=63.1;NF=12,27;NR=12,12;PP=1828,1837;QD=77.9583333333;SC=CTGTGACACTAGCATCTGCAT;SbPval=0.42;Source=Platypus;TC=58;TCF=26;TCR=32;TR=24,39;WE=101529422;WS=101529404;set=Platypus	GT:AD:AF:DP	0/1:59,39:0.40:98
chr15	101529414	.	AG	ATCTG	1837	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=1;MMLQ=27;MQ=63.1;NF=12,27;NR=12,12;PP=1828,1837;QD=77.9583333333;SC=CTGTGACACTAGCATCTGCAT;SbPval=0.42;Source=Platypus;TC=58;TCF=26;TCR=32;TR=24,39;WE=101529422;WS=101529404;set=Platypus	GT:AD:AF:DP	0/1:34,24:0.41:58
chr15	101550858	rs12595297	G	T	2194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=5.958;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.942;QD=11.08;ReadPosRankSum=-1.785;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:92,106:0.54:198
chr15	101550861	rs11300776	CT	C	1810.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.855;QD=9.89;ReadPosRankSum=0.459;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:25,158:0.86:183
chr15	101555399	rs2034809	G	A	3139.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:126,141:0.53:267
chr15	101561980	rs146724273	CGTGTGTGTGTGT	C,CGTGTGT	3385.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.00;QD=30.78;SOR=1.497;set=HC	GT:AD:AF:DP	1/2:1,61,48:0.55,0.44:110
chr15	101562793	rs11247253	G	A	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:120,120:0.50:240
chr15	101566118	rs4427776	C	T	2835.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:105,134:0.56:239
chr15	101567547	rs41319544	G	C	6910.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:403,370:0.48:773
chr15	101569467	rs11639307	T	C	5215.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:302,272:0.47:574
chr15	101588923	rs34698485	C	G	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr15	101591784	rs13329684	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr15	101591834	rs13329662	G	A	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:99,132:0.57:231
chr15	101591857	rs10710683	CG	C	10733.73	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr15	101591923	rs4965778	A	G	7765.77	.	AC=1;AF=0.500;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	0/1:608,429:0.41:1037
chr15	101593051	rs4965781	G	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr15	101597266	rs2924845	A	G	4073.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:220,198:0.47:418
chr15	101601564	rs72766872	A	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr15	101606889	rs2924835	GC	AA	41672.77	.	AC=2;AF=1.00;AN=2;DB;DP=952;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.76;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,931:1.00:931
chr15	101607513	rs2925201	T	C	10998.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr15	101791684	.	G	GGCCGCCGCCGCCGCCGCC	637.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.02;QD=63.77;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	101826919	rs28698071	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr15	101827759	rs35525027	T	C	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr15	101827855	rs61752834	C	T	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:72,140:0.66:212
chr15	101832387	rs8028930	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr15	101858536	rs45482895	C	T	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=3.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=1.951;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:132,70:0.35:202
chr15	101862970	rs1871975	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr15	101864997	rs2277593	G	A	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:110,65:0.37:175
chr15	101871941	rs34318939	G	GA	4625.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:82,143:0.64:225
chr15	101872306	rs2073592	G	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr15	101887794	rs1030	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	101888081	rs875293	C	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=1.804;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr15	101905084	rs4965833	G	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr15	101905327	rs11247286	C	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:75,35:0.32:110
chr15	101906205	rs8029952	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr15	101906263	rs8034182	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr15	101910511	rs2073591	A	C	3851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=859;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-1.290;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:600,252:0.30:852
chr15	101910550	rs20543	G	A	3185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.071;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:554,211:0.28:765
chr15	101922323	rs1058260	A	G	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:319,141:0.31:460
chr15	101929632	rs33912717	AT	A	4006.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=1.753;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.339;QD=14.36;ReadPosRankSum=-2.322;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:28,251:0.90:279
chr15	101929825	rs6598460	G	C	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	101970308	rs2643354	G	A	6402.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr15	101970323	rs3825896	G	T	5745.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr15	101970336	rs3825895	T	C	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr15	101971388	rs2643356	T	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	101972055	rs12902244	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr15	101984036	rs11855154	C	T	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=-0.435;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:10,25:0.71:35
chr15	102003442	rs12907397	C	T	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:124,70:0.36:194
chr15	102029475	rs201114579	C	CG	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.863;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=2.341;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr15	102029519	rs186935141	C	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.902;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=7.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.696;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr15	102029597	rs1135910	C	G	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.265;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-0.783;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:112,40:0.26:152
chr15	102029685	rs199543153	G	GGC	4871.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	102185368	.	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=4.163;QD=0.26;ReadPosRankSum=0.547;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:199,40:0.17:239
chr15	102186905	rs79256877	A	G	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:124,212:0.63:336
chr15	102191869	rs672314	G	A	5822.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr15	102192034	rs507903	A	G	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:398,185:0.32:583
chr15	102192418	rs3743188	C	T	20483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=1429;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-1.541;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:435,953:0.69:1388
chr15	102192540	rs675436	T	G	10912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.112;ClippingRankSum=0.000;DB;DP=1712;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=2.725;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:1069,626:0.37:1695
chr15	102192548	rs2939587	A	C	38453.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=1491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=0.984;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:2,1475:1.00:1477
chr15	102196186	rs572705	C	T	2804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-2.150;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:513,192:0.27:705
chr15	102211654	rs606511	T	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-1.970;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:33,17:0.34:50
chr15	102239546	rs74500709	G	A	3401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-0.144;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:109,166:0.60:275
chr15	102251993	rs11247320	G	A	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:52,83:0.61:135
chr15	102255246	.	G	GT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-1.338;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr15	102264476	rs1143136	C	A	16159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=1144;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=-1.029;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:381,755:0.66:1136
chr15	102277480	rs1052887	G	C	4117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.277;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:132,202:0.60:334
chr15	102284597	rs62027633	A	G	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-1.421;QD=2.07;ReadPosRankSum=1.607;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:470,119:0.20:589
chr15	102284675	rs182931332	A	G	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-0.668;QD=1.60;ReadPosRankSum=-1.880;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:487,107:0.18:594
chr15	102287886	rs375110977	G	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr15	102287989	.	A	AT	559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0.000;DP=338;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=47.37;MQRankSum=-6.245;QD=1.70;ReadPosRankSum=0.117;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:256,74:0.22:330
chr15	102288016	rs201217805	C	T	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.37;MQRankSum=-7.367;QD=2.75;ReadPosRankSum=2.181;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:249,76:0.23:325
chr15	102291954	rs28521777	C	T	2815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=864;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=0.467;QD=3.30;ReadPosRankSum=0.695;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:639,213:0.25:852
chr15	102312055	rs62026996	C	T	4664.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.330;MLEAC=2;MLEAF=1.000;MQ=47.20;MQRankSum=-1.788;QD=23.68;ReadPosRankSum=3.601;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:9,188:0.95:197
chr15	102312095	rs199873857	G	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=46.69;MQRankSum=3.420;QD=0.15;ReadPosRankSum=-1.082;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:174,26:0.13:200
chr15	102312240	rs59860046	GA	G	5515.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.93;QD=34.05;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	102312315	rs57638732	GA	G	8805.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.90;QD=36.69;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr15	102312835	rs62026997	C	T	17860.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,689:1.00:689
chr15	102313716	rs352719	A	G	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	102315736	rs11852801	A	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	102359203	rs79724132	G	A	8406.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	81639	rs118023239	C	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.23;MQRankSum=-4.290;QD=10.63;ReadPosRankSum=0.246;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr16	97354	rs8466	A	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr16	97610	rs798675	G	A	5876.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr16	97707	rs148403942	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr16	103423	rs2541593	C	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:57,76:0.57:133
chr16	103449	rs11376822	C	CG	5905.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	103517	rs183360	A	C	9862.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr16	105320	rs216596	A	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-1.068;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr16	106777	rs216597	G	C	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr16	106952	rs11435836	G	GC	747.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	107162	rs10266	C	G	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:78,106:0.58:184
chr16	107275	rs1045001	T	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr16	108585	rs216598	T	C	3901.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:88,191:0.68:279
chr16	108796	rs34941405	T	TG	3438.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	109671	rs216599	A	G	4903.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:151,239:0.61:390
chr16	110165	rs216600	T	C	3593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=-0.402;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:114,174:0.60:288
chr16	112112	rs216601	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr16	112151	rs216602	A	G	149.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	112513	rs216604	T	C	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:70,88:0.56:158
chr16	113883	rs10659183	G	GCC	6136.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:3,224:0.99:227
chr16	113886	rs11285099	GC	G	6253.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:3,236:0.99:239
chr16	113924	rs216605	A	G	3922.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:92,180:0.66:272
chr16	128179	rs2562162	T	C	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=0.454;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,52:0.76:68
chr16	136888	rs743725	T	C	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	138772	rs57321480	A	AG	12794.73	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr16	142825	rs2541618	T	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	143331	.	C	CA	2844.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.612;QD=13.68;ReadPosRankSum=-0.947;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:82,126:0.61:208
chr16	148352	rs2541616	G	A	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	160668	rs808892	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	175075	rs61016911	CA	C	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-0.826;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr16	203132	rs2541598	C	G	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	203135	rs2858919	T	A	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	204116	.	GCGGGGCGGGA	G	483.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.72;QD=40.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	204170	.	G	C	201.84	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.29;QD=33.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	204173	.	A	T	201.84	.	AC=2;AF=1.00;ALERT;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.29;QD=33.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	204174	.	G	GC	192.80	.	AC=2;AF=1.00;ALERT;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.29;QD=32.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	213329	rs2885589	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	214730	.	C	CG	846.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=31.36;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	216190	rs11431675	C	CG	5435.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	223706	rs2541640	A	G	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	223735	rs2685121	A	G	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	240280	rs1211375	A	C	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr16	278050	rs144575051	A	G	5823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-1.076;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:166,278:0.63:444
chr16	284556	rs7191945	G	C	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=1.116;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:52,32:0.38:84
chr16	284833	rs7202423	T	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	321626	rs117340695	C	T	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:181,80:0.31:261
chr16	325683	rs200964940	C	CG	749.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	325695	rs201791993	A	AG	752.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	325732	rs202190256	A	AG	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.46;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	325771	rs111978133	GT	G	1189.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	325943	.	A	AG	161.87	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	330661	.	C	CG	128	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	330671	.	G	A	137.03	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	330678	rs368146102	G	A	137.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	330823	rs146218748	G	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=0.706;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr16	334580	rs432925	G	C	2920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=0.911;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:279,175:0.39:454
chr16	334732	rs45593734	C	T	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:100,91:0.48:191
chr16	336660	rs11647490	G	A	7942.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:236,379:0.62:615
chr16	336916	rs1048786	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:90,61:0.40:151
chr16	338332	rs11374767	A	AC	716.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chr16	339672	rs412243	T	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.143;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:47,21:0.31:68
chr16	341079	rs12925669	G	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:58,29:0.33:87
chr16	354287	rs62032881	C	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:62,54:0.47:116
chr16	354493	rs62032882	C	T	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:171,106:0.38:277
chr16	359953	rs2301522	A	G	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:94,74:0.44:168
chr16	396264	rs1805105	A	G	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:383,167:0.30:550
chr16	397044	rs758033	G	T	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:120,82:0.41:202
chr16	418462	rs11640313	C	G	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:186,107:0.37:293
chr16	419092	rs3830160	A	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr16	419154	rs1802752	G	A	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:129,99:0.43:228
chr16	419283	rs11434190	A	AG	3336.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chr16	420140	rs3194151	G	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:99,63:0.39:162
chr16	420179	rs11557300	G	A	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr16	424420	rs3743888	C	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr16	425298	rs11648905	G	T	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.255;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=1.633;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:108,69:0.39:177
chr16	426432	rs2071915	T	C	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:136,99:0.42:235
chr16	426476	rs2071916	T	C	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:130,83:0.39:213
chr16	427013	rs763140	G	C	1881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=3.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-0.284;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:141,100:0.41:241
chr16	427349	rs763142	C	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr16	427479	rs11248931	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:131,50:0.28:181
chr16	427516	rs11649031	T	C	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.706;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:150,45:0.23:195
chr16	427657	rs11641693	G	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:121,71:0.37:192
chr16	427784	rs11641742	G	A	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:157,94:0.37:251
chr16	427820	rs12922073	C	T	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:124,78:0.39:202
chr16	427866	rs12933709	T	C	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=0.443;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:67,48:0.42:115
chr16	427925	rs61261356	T	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr16	447100	.	GTCCGGGGCGGCGGGGGGC	G	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=2.183;QD=2.89;ReadPosRankSum=-0.874;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr16	449162	rs7185254	T	C	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr16	449178	rs2363759	T	G	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr16	449345	rs763151	G	C	6418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=-0.527;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:193,307:0.61:500
chr16	449659	rs14293	G	A	6148.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:213,308:0.59:521
chr16	449980	rs28394836	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr16	450165	rs448063	T	C	6271.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:148,296:0.67:444
chr16	450309	rs5841	C	T	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr16	450368	rs182152446	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr16	452159	rs112988705	CCTTT	C	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr16	456239	rs11391097	G	GC	4829.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.59;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	456291	rs11391098	G	GC	7974.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-2.039;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:4,308:0.99:312
chr16	456416	rs3743890	T	G	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:235,109:0.32:344
chr16	456439	rs139257963	G	C	3873.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:90,187:0.68:277
chr16	456483	rs3785290	T	C	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	460123	rs140298403	C	A	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr16	476096	rs1883371	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	532248	rs9935319	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr16	532279	rs12917958	C	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr16	538711	rs3079539	C	CTT	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.400;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr16	539088	rs3830847	T	TAA	3529.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	539093	rs74390230	G	C	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr16	541067	rs113431292	C	T	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr16	541082	rs113182206	A	G	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:38,80:0.68:118
chr16	546688	rs112579549	C	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr16	547207	rs8059351	C	T	2492.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:58,122:0.68:180
chr16	547458	rs8052313	T	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr16	601632	rs3213574	T	C	8181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=-1.136;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:128,390:0.75:518
chr16	601870	rs28417967	G	A	6155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.136;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:82,283:0.78:365
chr16	602046	rs7196821	T	C	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	602403	rs73481377	C	G	20548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;ClippingRankSum=0.000;DB;DP=1392;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=-1.474;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:411,968:0.70:1379
chr16	604554	rs7763	T	C	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=0.461;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:35,78:0.69:113
chr16	633738	.	C	T	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.485;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:426,105:0.20:531
chr16	679412	rs9929621	C	T	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:17,67:0.80:84
chr16	679814	rs12447874	T	C	19650.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=803;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.27;ReadPosRankSum=0.379;SOR=0.261;set=HC	GT:AD:AF:DP	1/1:1,747:1.00:748
chr16	699456	rs12934086	A	G	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=-0.705;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr16	700644	rs13337278	G	C	13475.77	.	AC=1;AF=0.500;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	0/1:215,636:0.75:851
chr16	701578	rs35244470	C	T	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:25,81:0.76:106
chr16	703721	rs9936879	A	C	11932.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:153,547:0.78:700
chr16	705360	rs3803697	T	C	9930.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:134,452:0.77:586
chr16	705795	rs12599798	C	T	18700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=1154;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=0.458;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:272,839:0.76:1111
chr16	705844	rs8051645	T	C	13946.77	.	AC=1;AF=0.500;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	0/1:230,618:0.73:848
chr16	705873	rs144333089	G	A	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:503,198:0.28:701
chr16	706010	rs35582942	C	CA	1959.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:17,60:0.78:77
chr16	706067	rs9932866	G	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.53;ReadPosRankSum=-1.210;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:7,32:0.82:39
chr16	706267	rs9933039	G	A	1596.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.71;ReadPosRankSum=-0.491;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:9,72:0.89:81
chr16	707034	rs6600228	A	C	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:25,122:0.83:147
chr16	707295	rs6600229	T	G	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:20,58:0.74:78
chr16	708419	rs7188691	T	C	3898.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:57,171:0.75:228
chr16	709001	rs4984906	C	A	13009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=862;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.45;ReadPosRankSum=-0.233;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:240,602:0.71:842
chr16	709152	rs7184667	G	A	37988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.082;ClippingRankSum=0.000;DB;DP=1239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.542;QD=31.32;ReadPosRankSum=-0.268;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:274,939:0.77:1213
chr16	709157	rs7194532	T	C	37871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=1232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.553;QD=31.27;ReadPosRankSum=0.560;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:282,929:0.77:1211
chr16	710255	rs3752496	C	T	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:43,127:0.75:170
chr16	710808	rs73487454	G	A	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr16	711326	rs9932282	G	C	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:42,105:0.71:147
chr16	711545	rs11284424	CG	C	10263.73	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:181,491:0.73:672
chr16	711582	rs8062685	C	G	12577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=779;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.824;QD=16.55;ReadPosRankSum=-0.883;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:198,562:0.74:760
chr16	711712	rs3177415	C	T	18536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DB;DP=1175;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=1.207;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:298,859:0.74:1157
chr16	711905	rs2301426	A	G	16589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=1033;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-0.127;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:244,771:0.76:1015
chr16	712127	rs10903018	A	G	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	712867	rs1057835	A	G	10223.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:152,469:0.76:621
chr16	713204	rs9929652	A	G	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=2.242;QD=26.90;ReadPosRankSum=1.421;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr16	715847	rs3752494	A	G	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:42,122:0.74:164
chr16	715990	rs7190775	G	A	6473.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:102,293:0.74:395
chr16	716273	rs11866949	T	C	14416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=882;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.50;ReadPosRankSum=-0.093;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:207,667:0.76:874
chr16	716287	rs9934288	C	A	15469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;ClippingRankSum=0.000;DB;DP=935;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=2.019;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:224,705:0.76:929
chr16	716428	rs3743909	G	A	11040.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:128,488:0.79:616
chr16	716697	.	C	G	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0.000;DP=693;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.517;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:547,132:0.19:679
chr16	717057	rs7189028	T	C	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:47,121:0.72:168
chr16	717523	rs3752493	G	T	11886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=1.142;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:196,551:0.74:747
chr16	717544	rs3752492	G	C	10013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.498;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=0.673;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:165,466:0.74:631
chr16	717828	rs3752490	G	T	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:23,94:0.80:117
chr16	718514	rs7204542	C	G	20042.77	.	AC=2;AF=1.00;AN=2;DB;DP=800;set=Intersection	GT:AD:AF:DP	1/1:0,784:1.00:784
chr16	719592	rs11557858	G	A	10178.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:131,466:0.78:597
chr16	720071	rs62032482	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr16	720152	rs3752487	T	C	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:38,117:0.75:155
chr16	720960	rs3743912	C	T	8927.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:102,394:0.79:496
chr16	722331	rs3177338	C	T	7978.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:123,356:0.74:479
chr16	722548	rs1128550	A	G	6976.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:126,315:0.71:441
chr16	723647	rs1045716	C	G	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:12,48:0.80:60
chr16	745383	.	A	C	4050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.47;ReadPosRankSum=0.606;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:59,187:0.76:246
chr16	781757	rs72773426	C	T	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	815628	rs1737340	A	G	5838.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.110;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=2.098;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.17;ReadPosRankSum=2.277;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:3,229:0.99:232
chr16	816977	rs35935235	G	A	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	817511	rs374098962	G	A	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	822831	rs117278309	C	T	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	828844	rs1737342	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	837043	rs370406112	C	T	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=25.42;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	837310	rs531278	A	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	839262	rs569951	A	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	845901	rs2982244	T	C	8466.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr16	855342	rs614048	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	1014119	rs11862542	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	1034834	rs237674	T	C	7133.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr16	1115377	rs11649498	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	1115842	rs143173222	CGGCA	C	2944.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	1116220	rs34024516	T	TG	2350.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	1116445	rs530518	A	G	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=25.35;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	1129010	rs4988483	C	A	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	1129912	rs642249	A	G	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	1244877	rs9936834	G	A	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	1252369	rs61734410	C	T	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	1255030	rs2974835	A	G	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	1257731	rs12930875	G	A	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	1260021	rs8056494	G	T	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	1260481	rs8063574	T	C	9227.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr16	1260767	rs2738897	G	A	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.12;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	1261024	rs2738898	C	T	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	1261119	rs2738899	G	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	1261219	rs2753326	A	G	10378.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr16	1261222	rs2753325	A	G	10510.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	1261282	rs4984637	T	C	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	1261377	rs2738900	G	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	1265600	rs2235634	G	A	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	1265720	rs3897150	C	T	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	1266803	rs11395347	C	CT	769.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	1268494	rs2745136	C	T	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	1269029	rs2738893	T	C	3404.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.063;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.108;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=0.681;SOR=0.318;set=HC	GT:AD:AF:DP	1/1:1,134:0.99:135
chr16	1270162	rs1054645	G	A	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	1270349	rs4247094	T	C	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	1271890	rs1004041	G	T	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	1272038	rs11248860	G	A	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	1272865	rs4984639	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	1273638	rs909920	A	G	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	1275135	rs9938123	T	C	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	1278744	rs62012862	C	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.46;QD=38.07;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	1278767	rs201725275	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.60;QD=44.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	1278806	rs199504258	G	A	170.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.64;QD=28.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	1279537	rs188458795	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.31;QD=50.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	1279545	rs1800990	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.18;QD=46.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	1279555	rs148897236	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.00;QD=52.23;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	1279574	rs199887053	C	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.54;QD=46.43;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	1279584	rs111992451	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.71;QD=40.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	1279623	rs72633259	G	A	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	1279704	rs202107419	A	G	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=4.537;QD=20.44;ReadPosRankSum=-0.476;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	1279710	rs200630968	G	A	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.821;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.892;MLEAC=1;MLEAF=0.500;MQ=54.35;MQRankSum=4.207;QD=22.91;ReadPosRankSum=-0.533;SOR=1.555;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr16	1279714	rs192643610	A	G	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.892;MLEAC=1;MLEAF=0.500;MQ=54.35;MQRankSum=4.207;QD=20.20;ReadPosRankSum=-0.916;SOR=1.555;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr16	1279717	rs201728868	C	T	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.509;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=53.80;MQRankSum=4.040;QD=18.22;ReadPosRankSum=-0.472;SOR=1.192;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr16	1279732	rs201836020	C	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr16	1279778	.	G	C	100	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=4;MGOF=50;MMLQ=24;MQ=40.92;NF=0;NR=3;PP=100;QD=44.9237375157;SC=AGCAGCCCCAGGCCTGGGCCC;SbPval=1.0;Source=Platypus;TC=9;TCF=3;TCR=6;TR=3;WE=1279798;WS=1279768;set=Platypus	GT:AD:AF:DP	1/0:6,3:0.33:9
chr16	1279817	rs200692215	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	1291075	rs71380253	T	C	129.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.10;QD=32.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	1291114	rs28580251	C	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=46.17;MQRankSum=1.242;QD=5.85;ReadPosRankSum=0.566;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr16	1291175	rs146223687	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-2.974;QD=2.84;ReadPosRankSum=0.418;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:22,4:0.15:26
chr16	1291178	rs112944038	T	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.01;MQRankSum=-3.053;QD=2.62;ReadPosRankSum=0.184;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr16	1291182	rs112531166	C	T	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=-3.203;QD=2.23;ReadPosRankSum=-0.254;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,4:0.14:29
chr16	1291188	rs17434400	C	T	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=3.419;QD=19.02;ReadPosRankSum=0.817;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr16	1291308	rs201568970	A	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-4.944;QD=2.84;ReadPosRankSum=-0.251;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:56,8:0.12:64
chr16	1291318	rs151324823	G	C	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=53.18;MQRankSum=-5.127;QD=5.67;ReadPosRankSum=-2.495;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr16	1291337	rs200843295	G	A	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.01;MQRankSum=-5.382;QD=5.46;ReadPosRankSum=1.047;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr16	1291355	rs112842602	G	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:41,12:0.23:53
chr16	1291591	rs201278990	G	C	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.19;MQRankSum=-1.784;QD=9.88;ReadPosRankSum=-3.477;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr16	1291597	rs144979264	C	G	664.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=2.565;QD=13.57;ReadPosRankSum=3.542;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr16	1291598	rs200334042	G	A	528.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-2.750;QD=10.37;ReadPosRankSum=-2.895;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr16	1291608	rs201820654	A	G	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.43;MQRankSum=-3.066;QD=15.61;ReadPosRankSum=-3.190;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:41,24:0.37:65
chr16	1291623	.	C	T	1649.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=48.94;MQRankSum=-3.527;QD=16.66;ReadPosRankSum=-1.862;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:59,40:0.40:99
chr16	1291624	.	C	G	1802.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.94;MQRankSum=-3.370;QD=17.50;ReadPosRankSum=-2.078;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:60,43:0.42:103
chr16	1291639	rs201223167	A	G	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.64;MQRankSum=-5.140;QD=10.50;ReadPosRankSum=2.811;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:113,61:0.35:174
chr16	1291717	rs202230226	T	TG	1657.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=48.19;MQRankSum=-3.464;QD=11.51;ReadPosRankSum=0.646;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:82,62:0.43:144
chr16	1291753	rs369483846	CCTGGGCTCCCT	C	988.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.80;MQRankSum=-0.925;QD=15.69;ReadPosRankSum=0.007;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:36,27:0.43:63
chr16	1291800	rs375717182	G	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=10.017;MLEAC=1;MLEAF=0.500;MQ=38.87;MQRankSum=-0.408;QD=10.61;ReadPosRankSum=-2.164;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr16	1291831	rs202156919	G	C	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.706;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.75;MQRankSum=0.081;QD=9.54;ReadPosRankSum=-0.143;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr16	1291850	rs200171211	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.11;MQRankSum=0.765;QD=8.20;ReadPosRankSum=-0.160;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr16	1292085	rs201539350	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.097;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=1.173;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr16	1292124	rs144701102	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.402;MLEAC=1;MLEAF=0.500;MQ=46.67;MQRankSum=-1.809;QD=5.53;ReadPosRankSum=1.965;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr16	1292147	rs145402040	G	A	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.213;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=14.868;MLEAC=1;MLEAF=0.500;MQ=52.77;MQRankSum=-0.945;QD=5.66;ReadPosRankSum=-1.857;SOR=2.795;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr16	1292254	rs1060314	T	G	5063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-0.425;QD=21.37;ReadPosRankSum=3.596;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:110,127:0.54:237
chr16	1292257	rs17135220	G	T	5060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.834;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-0.349;QD=20.74;ReadPosRankSum=3.831;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:112,132:0.54:244
chr16	1292425	rs67723611	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.03;QD=30.31;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	1306642	rs61739908	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=25.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	1306802	rs2401930	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-2.858;QD=1.64;ReadPosRankSum=-0.871;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:20,3:0.13:23
chr16	1306817	rs3993983	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.226;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-2.267;QD=2.78;ReadPosRankSum=-0.116;SOR=1.499;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr16	1306873	rs113333718	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr16	1306918	rs74470113	C	T	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.603;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-3.827;QD=15.89;ReadPosRankSum=-0.490;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:43,33:0.43:76
chr16	1306921	rs78324915	G	A	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.150;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-3.820;QD=15.41;ReadPosRankSum=0.798;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:47,32:0.41:79
chr16	1306927	rs79472859	C	T	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.040;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-3.759;QD=14.95;ReadPosRankSum=0.758;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:47,33:0.41:80
chr16	1306971	rs72775466	A	G	1315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-3.699;QD=13.71;ReadPosRankSum=2.670;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:59,37:0.39:96
chr16	1306971	.	ACA	GCG	1199	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=4;MGOF=34;MMLQ=23;MQ=57.46;NF=10;NR=13;PP=1199;QD=54.455124994;SC=ATCTCCAGCCACATCCACACG;SbPval=0.3;Source=Platypus;TC=55;TCF=29;TCR=26;TR=23;WE=1306994;WS=1306961;set=Platypus	GT:AD:AF:DP	0/1:32,23:0.42:55
chr16	1306973	rs79313952	A	G	1315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-3.871;QD=13.29;ReadPosRankSum=3.176;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:63,36:0.36:99
chr16	1306986	rs72775467	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr16	1323781	rs1610294	T	C	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	1358608	rs148430996	ATGAGGGAGGGAGGGAATTAG	A	54.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	1358917	rs11644706	A	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	1358976	rs11645809	T	A	221.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.18;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	1364140	rs9941160	T	C	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	1364281	rs4984806	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	1370303	rs909916	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.50;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	1370309	rs909917	C	G	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	1370597	rs4017786	G	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	1370614	rs8063770	C	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	1370630	rs8043720	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	1374656	rs761060	A	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	1374818	rs8063	A	G	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	1388416	rs13338616	T	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	1388888	rs7197416	C	T	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	1389153	rs7202563	C	A	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	1389751	rs113792347	C	G	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	1391221	rs34468534	G	A	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	1391871	rs2369699	C	G	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	1392877	rs742458	T	C	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	1394507	rs1132356	A	C	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	1394551	rs11248872	A	G	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	1394741	rs151251565	AGCCAACAGG	A	8230.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	1397518	rs34339539	G	GC	2396.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr16	1398077	rs34766513	C	CCT	14052.73	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=44.61;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	1407792	rs4984644	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	1407809	rs4984820	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	1417408	rs4984823	T	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	1417558	.	G	GCCCT	275	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=3;HapScore=2;MGOF=66;MMLQ=24;MQ=59.68;NF=2;NR=2;PP=275;QD=73.25;SC=GTCACCTGCGGCCCTCCCTCC;SbPval=0.48;Source=Platypus;TC=8;TCF=5;TCR=3;TR=4;WE=1417566;WS=1417551;set=Platypus	GT:AD:AF:DP	1/1:4,4:0.50:8
chr16	1419947	rs11248874	A	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	1433766	rs12918814	T	C	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	1447278	rs61738727	A	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	1451519	rs761068	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	1451852	.	G	A	1308.77	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	1455900	rs8044833	C	T	6845.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr16	1458561	rs2179534	T	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.93;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	1464636	rs111437424	A	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.23;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	1476465	rs4984834	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	1484338	rs7192100	A	G	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	1484392	rs12598718	G	C	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	1484473	rs7192331	A	G	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	1492660	rs760993	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	1493030	rs1883480	C	G	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	1493098	rs760994	G	A	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	1493130	rs760995	C	T	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	1493759	rs12596752	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	1497137	rs12599176	C	T	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	1498197	rs2235578	A	G	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	1498520	rs12597739	A	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	1499377	rs742408	C	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	1503879	rs2235579	T	A	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr16	1504017	rs4786337	A	G	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	1504633	rs4265806	C	T	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	1505599	rs7190701	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	1506130	rs41286695	C	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	1524085	rs55927314	C	CA,CAA	733.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=1.178;SOR=1.075;set=HC	GT:AD:AF:DP	1/2:7,28,13:0.58,0.27:48
chr16	1524261	rs28550432	G	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	1524850	rs3751884	A	G	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	1536372	rs28444604	G	A	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	1536535	rs2745098	C	T	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	1536677	rs12928073	C	A	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	1537451	rs28473314	C	G	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.29;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	1537455	rs2667673	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.29;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	1537839	rs2745101	G	A	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	1538363	rs1040499	C	A	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	1538433	rs2745102	A	G	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr16	1538464	rs2745103	C	T	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	1538692	rs2667675	A	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	1544301	rs2667660	GA	CG	12441.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr16	1547220	rs2235630	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	1550409	rs147777945	C	T	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	1551826	rs72779276	C	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	1557794	rs12927760	A	T	509.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.39;ReadPosRankSum=-0.823;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr16	1573810	rs2745176	A	G	7712.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr16	1633602	.	GT	G	199.73	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	1705831	.	C	T	1435.77	.	AC=2;AF=1.00;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	1706435	rs61739874	C	T	7223.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	1728147	rs113571946	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	1752250	.	G	A	598.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr16	1815946	rs2575371	C	T	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	1817431	rs2575369	C	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	1817754	rs2076427	A	G	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	1817768	rs2076428	T	G	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	1817935	rs2076429	A	C	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	1818152	rs2076430	CT	TC	9661.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	1818503	rs2076431	G	C	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	1818680	rs2072989	G	C	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	1820992	rs11890	T	A	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	1822797	rs34595082	C	CACCT	591.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	1822947	rs1076695	C	G	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	1823444	rs761065	C	G	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	1825768	rs2745169	A	C	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	1826302	rs2437732	G	T	3920.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.97;ReadPosRankSum=1.641;SOR=0.423;set=HC	GT:AD:AF:DP	1/1:1,150:0.99:151
chr16	1826377	rs2235636	A	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	1827836	rs1178432	T	C	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	1836709	rs2575351	G	C	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	1836796	rs2235648	C	A	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr16	1837900	rs344358	T	C	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	1838640	rs344359	T	C	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	1838836	rs1065656	C	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	1842209	rs3751893	A	G	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	1843672	rs3817902	T	C	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	1844781	rs2256923	A	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	1859150	rs1057071	G	A	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.95;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	1859153	rs1057070	T	C	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.20;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	1859432	rs1628812	G	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	1859476	rs1629513	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.67;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	1859482	rs1629534	A	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	1859730	rs2745199	G	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	1859850	rs1742442	A	G	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	1870037	rs144480059	TGGGCTGCCTGCTGAGCTGAGG	T	3695.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	1872160	rs238680	G	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	1872479	rs238679	A	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	1873087	rs104843	C	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	1902889	rs1617255	T	C	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	1904239	rs10500322	T	A	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	1907652	rs428123	G	A	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	1907701	rs408286	AG	CA	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	1907946	rs411193	C	T	128.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	1910373	rs433268	C	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	1912139	rs380846	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	1917998	rs1742444	T	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	1918125	rs1742446	T	G	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	1961674	rs337285	G	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	2059621	rs11366527	GC	G	3259.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	2059674	rs71384660	T	C	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	2059698	rs71384661	T	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	2059708	rs71384662	T	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.34;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	2059710	rs71384663	T	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.87;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	2059736	rs71148116	CG	C	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.23;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	2059778	.	GT	G	91	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=1;HapScore=4;MGOF=130;MMLQ=23;MQ=60.0;NF=1;NR=3;PP=91;QD=35.0077249675;SC=CTCTCGGCCGGTCGTGGCGCC;SbPval=0.68;Source=Platypus;TC=4;TCF=1;TCR=3;TR=4;WE=2059798;WS=2059768;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	2059939	rs968418	A	C	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	2059955	rs62038790	A	G	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	2120402	rs7187438	T	C	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	2203456	rs26931	T	C	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	2233565	rs889495	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	2237467	rs374999558	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	2255807	rs112805476	G	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	2259865	rs25852	C	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	2260585	.	CCAG	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.680;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:101,10:0.09:111
chr16	2260921	rs76610224	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	2282256	rs26839	G	A	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr16	2328790	rs150928	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	2331430	rs149532	A	G	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	2334554	rs1183064	A	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	2337993	rs313909	G	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	2338243	.	C	A	5491.77	.	AC=1;AF=0.500;AN=2;DP=478;set=Intersection	GT:AD:AF:DP	0/1:201,271:0.57:472
chr16	2338363	rs313908	C	G	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	2347831	rs148780137	C	T	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:76,111:0.59:187
chr16	2369485	rs5815117	C	CA	474.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-0.473;QD=12.83;ReadPosRankSum=1.326;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr16	2373786	rs323060	C	A	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	2375961	rs46725	C	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	2479712	rs13337091	A	C	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	2485620	rs146413013	ACACACACACATATATATG	A	417.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	2485667	.	CATATATATATATATATAT	C	423.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.31;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	2485896	rs12928789	A	G	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	2486998	rs12921396	A	T	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	2487012	rs34456414	C	CT	1764.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	2487116	.	G	A	3946.77	.	AC=1;AF=0.500;AN=2;DP=317;set=Intersection	GT:AD:AF:DP	0/1:126,189:0.60:315
chr16	2487151	rs371699142	G	A	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:117,197:0.63:314
chr16	2488211	rs12926008	T	C	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	2489533	rs28647184	T	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	2498828	rs28417759	A	G	10825.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr16	2498849	rs28670436	G	A	12765.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr16	2499011	rs8060813	T	C	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	2499178	rs148573205	C	T	9313.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:216,433:0.67:649
chr16	2499786	.	G	GTCCCCTCCA	9072.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.02;MQRankSum=-1.620;QD=26.61;ReadPosRankSum=1.219;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:2,339:0.99:341
chr16	2510154	rs186033526	G	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr16	2510603	rs4786284	C	T	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	2512523	rs3810794	G	A	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:183,97:0.35:280
chr16	2749195	rs3094473	A	G	6478.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:252,330:0.57:582
chr16	2802684	rs2240146	T	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	2808363	rs3094778	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr16	2809104	rs72768761	G	A	1646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=-0.244;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:121,92:0.43:213
chr16	2812890	rs2240141	A	G	6307.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	2813372	.	G	A	3405.77	.	AC=1;AF=0.500;AN=2;DP=238;set=Intersection	GT:AD:AF:DP	0/1:79,156:0.66:235
chr16	2813957	rs148873006	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:111,52:0.32:163
chr16	2814162	rs3094775	G	A	5067.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	2815237	rs3094773	A	C	7877.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	2818161	rs2301802	T	C	7737.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,291:0.99:293
chr16	2818704	rs3094792	T	G	12407.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:2,482:1.00:484
chr16	2820446	rs35899615	C	G	6333.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:250,321:0.56:571
chr16	2820882	rs1050134	G	T	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:49,54:0.52:103
chr16	2821573	rs8017	C	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:88,45:0.34:133
chr16	2825594	rs3094774	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=0.931;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr16	2834826	rs12931183	A	G	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.895;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:179,83:0.32:262
chr16	2835189	rs12599918	G	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:143,74:0.34:217
chr16	2835783	.	C	T	1259.77	.	AC=1;AF=0.500;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	0/1:64,60:0.48:124
chr16	2836027	rs7195287	T	G	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:181,111:0.38:292
chr16	2836271	rs11643898	C	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr16	2837592	rs34341809	T	G	1866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=4.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.647;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:234,114:0.33:348
chr16	2837603	rs11076829	C	T	2849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=4.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=0.163;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:190,81:0.30:271
chr16	2854907	rs2015682	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr16	2867450	rs71386691	G	C	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.972;QD=16.38;ReadPosRankSum=0.132;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:13,45:0.78:58
chr16	2867530	rs111876704	GA	G	297.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr16	2871121	rs11076844	T	C	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	2871555	rs10641	G	A	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr16	2880614	rs2190809	T	C	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	2880870	rs2240614	G	C	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	2882197	rs12373	G	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	2891635	rs11860210	C	G	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:286,152:0.35:438
chr16	2903047	rs1054912	G	C	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	2903068	rs113609771	A	C	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr16	2903081	rs3743944	G	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:99,66:0.40:165
chr16	2903850	rs112285893	G	C	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr16	2906711	rs117946652	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr16	2906934	rs732532	G	A	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=1.452;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:86,37:0.30:123
chr16	2946697	rs61223280	A	T	9737.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:322,464:0.59:786
chr16	2949248	rs7281	T	C	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	2949269	rs34090411	C	CTT	421.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=2.404;SOR=1.871;set=HC	GT:AD:AF:DP	0/1:11,31:0.74:42
chr16	2973249	rs11642228	T	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr16	2980272	rs3743949	A	G	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:40,78:0.66:118
chr16	2983138	rs2074363	C	T	4911.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:138,236:0.63:374
chr16	2983483	rs2074362	C	G	2340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-1.435;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:53,106:0.67:159
chr16	2983516	rs61747747	C	T	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=0.007;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:167,85:0.34:252
chr16	2984542	rs76530521	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr16	2986233	rs9933986	G	T	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	2986266	rs9921749	C	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr16	2986289	rs9921808	C	G	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	2986323	rs9928222	T	C	6775.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	2986840	rs2074358	G	C	6468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-0.527;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:177,304:0.63:481
chr16	2986894	rs113530410	G	T	2248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-1.372;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:247,134:0.35:381
chr16	2987002	rs2074357	C	T	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:56,110:0.66:166
chr16	2987074	rs140936158	G	GCTCTGAGAGCTGGTGTCCGCTGCTCCTCCCCTCCCATTTCTC	2549.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.99;SOR=2.786;set=HC	GT:AD:AF:DP	1/1:2,48:0.96:50
chr16	2987315	rs61747749	G	A	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=1.207;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:54,65:0.55:119
chr16	2988507	rs12373088	T	C	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:84,47:0.36:131
chr16	2989884	rs1060485	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr16	2989905	rs1060484	G	T	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.788;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-1.722;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:66,45:0.41:111
chr16	2998629	rs8050688	T	G	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=1.405;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:58,99:0.63:157
chr16	3014412	rs1076231	G	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:90,65:0.42:155
chr16	3014990	rs62032326	C	A	5429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-0.527;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:232,159:0.41:391
chr16	3014999	rs62032327	C	G	5088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=-0.623;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:197,137:0.41:334
chr16	3016885	rs58462745	A	G	9230.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.28;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	3016885	.	ATGCTGACTGC	GTGCTGACTGC,GTGCTGACTGT	1498	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=27;MMLQ=27;MQ=59.81;NF=64,21;NR=78,25;PP=1498,641;QD=10.7941634686;SC=GGTCCTCAGGATGCTGACTGC;SbPval=0.53;Source=Platypus;TC=142;TCF=64;TCR=78;TR=142,46;WE=3016903;WS=3016875;set=Platypus	GT:AF:DP	0/1:1.00:142
chr16	3016895	rs146588207	C	T	1681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.068;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:197,100:0.34:297
chr16	3017272	rs2285827	G	T	2759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=0.247;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:109,140:0.56:249
chr16	3017781	rs11861396	C	G	3338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=-0.328;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:281,191:0.40:472
chr16	3017854	rs11866302	G	C	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:144,109:0.43:253
chr16	3018328	rs7203326	G	A	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	3018607	rs7184103	T	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr16	3021116	rs4786365	T	C	5968.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr16	3024188	rs2074528	T	C	4902.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	3063264	rs2227269	C	T	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.437;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=1.476;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:210,76:0.27:286
chr16	3065924	rs2269911	G	A	2361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.017;QD=5.51;ReadPosRankSum=-0.381;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:289,140:0.33:429
chr16	3071420	rs2232798	T	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:88,48:0.35:136
chr16	3073240	rs10508	G	T	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=0.800;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:59,41:0.41:100
chr16	3074426	rs56708449	G	C	4118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.973;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:307,225:0.42:532
chr16	3075999	rs2245000	C	G	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:221,154:0.41:375
chr16	3077710	.	CTT	C	497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=0.502;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:45,31:0.41:76
chr16	3078165	rs12448103	A	G	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:128,62:0.33:190
chr16	3078544	rs2079244	T	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr16	3078616	rs5815143	CATT	C	2349.73	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:177,70:0.28:247
chr16	3096863	rs2250306	G	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.55;ReadPosRankSum=1.673;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr16	3097074	rs909408	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=1.050;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr16	3097286	rs116852132	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr16	3097568	rs3743937	C	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:103,41:0.28:144
chr16	3097596	rs3743936	T	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=1.431;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr16	3106026	rs3888711	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr16	3106994	rs1064948	A	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr16	3117272	.	CTGTG	C	145.94	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	3142615	.	C	A	11162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DP=814;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.800;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:273,528:0.66:801
chr16	3282605	rs2075852	T	C	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=8.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-0.472;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:187,98:0.34:285
chr16	3293888	rs1231122	C	T	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:96,105:0.52:201
chr16	3293922	rs1231123	A	T	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:134,149:0.53:283
chr16	3294154	rs3974658	GT	G	1078.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.174;QD=4.42;ReadPosRankSum=0.148;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:148,96:0.39:244
chr16	3294678	rs1231124	G	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr16	3296429	rs224204	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr16	3296616	rs224205	C	T	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:97,63:0.39:160
chr16	3297073	rs224206	A	G	3696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.639;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.330;QD=6.06;ReadPosRankSum=1.365;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:389,221:0.36:610
chr16	3297175	rs224207	T	C	5907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.546;QD=9.45;ReadPosRankSum=0.227;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:440,185:0.30:625
chr16	3297181	rs224208	C	T	5662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-0.472;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:398,170:0.30:568
chr16	3298642	rs224211	G	A	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.386;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:72,45:0.38:117
chr16	3298865	rs224212	T	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chr16	3299749	rs224213	G	A	2945.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:250,165:0.40:415
chr16	3301897	rs224218	A	G	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.278;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:43,35:0.45:78
chr16	3302051	rs33924616	TA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=0.728;QD=2.58;ReadPosRankSum=1.372;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr16	3304463	rs224222	C	T	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:121,86:0.42:207
chr16	3304573	rs224223	G	T	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.947;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-0.290;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:69,59:0.46:128
chr16	3304654	rs224224	T	C	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-2.176;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:154,100:0.39:254
chr16	3304762	rs224225	A	G	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.414;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:245,126:0.34:371
chr16	3338343	rs188761	G	C	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr16	3339435	rs220379	G	C	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:196,99:0.34:295
chr16	3350639	rs7185015	A	G	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:32,9:0.22:41
chr16	3364867	rs12325636	G	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:79,47:0.37:126
chr16	3367061	rs17611827	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr16	3367229	rs17611866	T	C	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-1.243;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:219,95:0.30:314
chr16	3405875	rs1009429	T	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	3405994	rs1228348	A	G	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	3406387	rs1218763	C	G	12116.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr16	3438865	rs11643983	G	A	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	3440390	rs4786412	C	T	7694.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	3440394	rs27237	A	G	7693.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	3441697	rs7204842	A	C,AC	3080.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.23;SOR=0.954;set=HC	GT:AD:AF:DP	1/2:0,68,22:0.76,0.24:90
chr16	3444157	rs12448573	T	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	3452193	rs37811	T	G	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr16	3452453	rs377727247	C	CTT,CTTT	3066.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.647;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.48;MQRankSum=0.855;QD=20.18;ReadPosRankSum=-0.543;SOR=1.290;set=HC	GT:AD:AF:DP	1/2:17,92,43:0.61,0.28:152
chr16	3455079	rs37813	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	3458219	rs37819	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	3490922	rs2270494	G	C	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	3533577	rs1137454	C	G	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	3534892	rs13740	G	A	21659.77	.	AC=2;AF=1.00;AN=2;DB;DP=824;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,810:1.00:810
chr16	3535116	rs4785936	T	C	7235.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:1,280:1.00:281
chr16	3535540	rs2240075	G	A	14856.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr16	3583173	rs3751837	C	T	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	3594162	rs60164526	GA	G	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=2.105;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:76,47:0.38:123
chr16	3599655	rs12448257	G	A	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr16	3602227	rs56070390	AG	A	7293.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	3605924	rs146562000	A	AAAAT,AAAATAAAT	1509.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.90;MQRankSum=0.000;QD=38.71;ReadPosRankSum=0.667;SOR=0.622;set=HC	GT:AD:AF:DP	1/2:1,24,14:0.62,0.36:39
chr16	3611610	rs8050566	C	T	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	3613126	rs12445430	C	T	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	3613150	rs8044743	A	G	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	3627358	rs758747	C	T	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	3634746	rs12933120	C	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	3639139	rs3810812	A	G	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	3656482	rs8061528	C	T	7418.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	3706337	rs758745	C	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	3707409	rs1799892	G	C	4332.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	3707747	rs1053874	G	A	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	3708282	.	A	AT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.184;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:134,32:0.19:166
chr16	3721773	rs1136948	G	C	23167.77	.	AC=2;AF=1.00;AN=2;DB;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,901:1.00:901
chr16	3738887	rs2072379	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	3739243	.	CTT	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=0.919;QD=5.89;ReadPosRankSum=0.116;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr16	3808052	.	T	TA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.007;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chr16	4015729	rs879620	C	T	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	4016676	rs2230742	A	G	18055.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:3,696:1.00:699
chr16	4027423	rs2072346	C	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	4027605	rs2240735	C	T	14419.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr16	4027688	rs2531990	T	C	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	4027749	rs2601774	A	G	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	4033436	rs2230739	T	C	7669.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	4039141	rs2072341	A	G	8764.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr16	4042449	rs2239307	C	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	4043292	rs2239309	C	G	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	4164364	rs2230738	C	T	2780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=-1.148;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:62,130:0.68:192
chr16	4165432	rs2530898	T	C	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	4242093	rs8051399	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr16	4245393	rs11076822	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.044;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.60;ReadPosRankSum=-0.664;SOR=3.477;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	4245426	rs11076823	C	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr16	4245693	rs10852643	A	G	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	4253034	rs17136872	T	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr16	4253130	rs56280975	CG	TA	1934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.585;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=0.619;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:134,56:0.29:190
chr16	4254725	rs8054937	A	G	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	4254758	rs62039298	A	T	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	4256705	rs13334805	G	A	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	4256755	rs58255304	TC	T	8183.73	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=32.09;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	4257060	rs13334970	G	A	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	4257281	rs9922726	A	C	16235.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.73;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chr16	4257286	rs9924822	T	C	16277.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr16	4258173	rs889807	T	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	4292002	rs77545585	C	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:80,32:0.29:112
chr16	4310468	rs251732	C	G	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	4386814	rs669561	T	C	15646.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr16	4410867	rs140995663	TCACTGCTGGCCCCACCTCTCCA	T	2589.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:58,71:0.55:129
chr16	4414727	rs2277852	G	A	2026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=3.071;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:74,98:0.57:172
chr16	4414987	rs2277851	G	A	3358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=2.068;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:113,158:0.58:271
chr16	4415410	rs3747575	G	T	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:68,88:0.56:156
chr16	4415455	rs3747576	C	G	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:88,112:0.56:200
chr16	4431202	rs758044	A	G	8084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=0.146;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:304,401:0.57:705
chr16	4431360	rs35713275	G	A	5179.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:166,240:0.59:406
chr16	4432029	rs3810818	A	C	6906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.983;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:261,344:0.57:605
chr16	4445327	rs3747579	C	T	2691.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:92,134:0.59:226
chr16	4455675	rs3747580	G	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr16	4475868	rs2304631	A	T	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=0.024;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr16	4476089	rs1139652	T	C	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:56,98:0.64:154
chr16	4484328	rs4785962	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.913;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.44;ReadPosRankSum=-1.540;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	4484396	rs1139653	A	T	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:49,61:0.55:110
chr16	4484613	rs4785964	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr16	4494549	rs12446640	A	G	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-1.168;QD=12.32;ReadPosRankSum=0.639;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr16	4496973	rs2304633	T	A	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr16	4500544	rs2304634	C	T	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:105,125:0.54:230
chr16	4516092	rs3747584	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=1.580;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr16	4519548	rs62039231	A	G	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr16	4524060	rs3761680	C	A	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-0.570;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:32,39:0.55:71
chr16	4562351	rs8129	T	C	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=0.852;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr16	4562512	rs7665	A	G	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:131,109:0.45:240
chr16	4621725	rs35531180	GA	G	1846.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	4625126	rs9673241	G	A	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:59,100:0.63:159
chr16	4625274	rs1256768	A	G	4966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-1.127;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:411,277:0.40:688
chr16	4625938	rs2450386	A	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr16	4641814	rs5815211	AG	A	841.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr16	4649103	.	G	GA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.21;ReadPosRankSum=1.284;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr16	4649955	rs11076843	T	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	4649965	rs7403819	T	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.68;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	4660196	rs2306770	G	C	3610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=1.218;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:308,203:0.40:511
chr16	4660247	rs863500	G	A	3140.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:220,170:0.44:390
chr16	4660342	rs841184	C	T	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	4664412	rs138923012	T	TG	97.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	4664833	rs860889	T	G	5483.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	4674954	rs3747587	C	G	4617.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:126,223:0.64:349
chr16	4675116	rs1386092	G	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:65,92:0.59:157
chr16	4700318	rs373572089	CA	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.948;QD=3.63;ReadPosRankSum=1.927;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chr16	4714639	rs1659479	T	C	2532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=0.941;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:267,147:0.36:414
chr16	4715012	rs3813746	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr16	4718388	rs34069734	A	G	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:148,107:0.42:255
chr16	4721468	rs715109	T	C	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.153;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:235,113:0.32:348
chr16	4723451	rs2289314	A	G	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:89,70:0.44:159
chr16	4736080	rs144808025	TTCTGGCTGCGC	T	1033.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr16	4736316	rs841225	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:138,71:0.34:209
chr16	4747136	rs841215	G	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:109,62:0.36:171
chr16	4748825	rs841214	C	T	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:85,74:0.47:159
chr16	4751045	rs863980	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:111,62:0.36:173
chr16	4752134	rs841210	A	G	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=0.841;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:123,66:0.35:189
chr16	4786456	rs859314	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr16	4787987	rs859310	G	A	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.255;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.711;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.773;QD=6.52;ReadPosRankSum=0.545;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:62,39:0.39:101
chr16	4790204	rs61731839	C	G	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:54,73:0.57:127
chr16	4790273	rs859305	G	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:92,69:0.43:161
chr16	4794873	rs2075469	C	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr16	4796393	rs737700	A	G	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=0.394;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:140,92:0.40:232
chr16	4796595	rs759988	T	C	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-2.808;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:71,38:0.35:109
chr16	4796871	rs2341988	A	G	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	4796952	.	TGAG	T	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.120;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:168,19:0.10:187
chr16	4797226	rs759989	T	C	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr16	4797457	rs17853375	C	T	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:137,102:0.43:239
chr16	4801723	rs921863	G	A	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=0.747;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:31,26:0.46:57
chr16	4802370	rs3747601	C	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr16	4802386	rs3747602	G	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr16	4812209	rs12599765	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:69,66:0.49:135
chr16	4815425	rs4786548	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	4815501	rs12928542	G	C	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr16	4815602	rs12919587	T	C	4036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-1.264;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:138,202:0.59:340
chr16	4815608	rs4786549	A	G	11596.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.29;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr16	4833861	rs112713748	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr16	4835794	rs3833435	G	GA	818.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.99;ReadPosRankSum=1.156;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr16	4836155	rs71402568	G	GT	781.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr16	4846068	rs2075465	T	C	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:89,75:0.46:164
chr16	4847524	rs1982515	T	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:31,54:0.64:85
chr16	4847619	.	T	TGGGGTACACCAGACCCCAAGACTGGGGCGCTCTGAGGGCGTGGCAGGGCCCTCAGAACCCCTGCCCACTGTG	950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.71;ReadPosRankSum=0.763;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr16	4848494	rs8053790	C	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr16	4848807	rs3214843	TAA	T	3378.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;MQ=60.24;set=Intersection	GT:AD:AF:DP	0/1:40,85:0.68:125
chr16	4851862	rs75558393	G	A	157.28	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr16	4855279	rs8064024	A	G	2665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-1.420;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:80,132:0.62:212
chr16	4861709	rs2085329	G	C	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	4867565	rs6500635	A	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr16	4897153	rs2072595	A	G	3074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=1.780;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:81,155:0.66:236
chr16	4903243	rs8056889	C	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr16	4908504	rs3747613	C	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr16	4933939	rs2037912	G	C	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr16	4934549	rs1049208	G	A	18849.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr16	4934564	rs1049207	C	G	19280.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr16	4938160	rs2734742	T	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	4938280	rs2075637	T	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	4938321	rs2075636	A	T	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	4940387	rs11644917	G	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	4940809	rs2471844	A	G	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	4940989	rs2471843	A	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.81;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	4940994	rs760118	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.81;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	4942099	rs1049205	C	T	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	4944518	rs1876363	C	G	10224.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:2,409:1.00:411
chr16	4945221	rs12709119	A	G	6095.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	4947534	rs8051246	T	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	4948936	rs12443906	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr16	4952598	rs2048098	C	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr16	4961003	rs8057613	A	G	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	5009433	rs7200245	G	A	1671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.116;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:129,93:0.42:222
chr16	5037498	.	T	TG	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.540;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.370;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr16	5041778	rs2972265	T	C	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	5046787	rs2270260	G	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	5050897	rs2286966	G	C	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	5055864	rs55930593	CA	C	604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.431;QD=5.99;ReadPosRankSum=-0.032;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:37,64:0.63:101
chr16	5056122	rs2302555	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	5061085	rs2908669	A	C	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	5075542	rs887854	G	A	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	5077188	.	GACACTGCTTTACTGTA	G	2530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=2.609;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:139,71:0.34:210
chr16	5077395	rs71402581	TGGGAGGA	T	1497.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	5078841	rs1995278	T	C	7517.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr16	5083483	rs2972272	T	C	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	5094570	rs8055684	G	A	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	5105365	rs741167	C	T	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.575;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	5105440	rs741166	T	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	5106184	rs741164	C	T	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	5108808	rs17137557	G	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	5110271	rs2270834	C	T	6480.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	5122072	rs112683515	G	GGTCT	1849.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.101;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.382;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:126,54:0.30:180
chr16	5122191	rs34061670	C	CG	1967.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.52;SOR=1.692;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	5123270	rs62036244	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr16	5125365	rs4786590	C	T	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	5127335	rs11076869	T	A	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	5517175	rs34212245	T	TTC	162.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr16	6533549	rs7187508	C	A	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	6704474	rs11640601	A	G	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.41;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	6704480	rs11645523	C	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.76;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	6704749	rs2058527	T	G	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	7102036	rs35212568	CT	C	10528.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	7657432	rs4616299	A	G	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	7703785	rs3217052	G	GCT	1360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-0.209;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:420,123:0.23:543
chr16	7704032	rs2302216	T	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.630;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:54,9:0.14:63
chr16	7715108	rs8064206	T	C	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr16	7726691	rs2191134	A	G	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	7743418	rs60812796	C	CT	580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.852;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:149,76:0.34:225
chr16	7759164	rs7196923	T	C	12156.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr16	7759206	rs62011897	G	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=-1.325;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:98,25:0.20:123
chr16	7760846	rs5815427	T	TA	302	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:3,19:0.86:22
chr16	8619750	rs7198383	C	T	6119.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:76,278:0.79:354
chr16	8620096	rs9922116	T	C	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	8620126	rs34435406	T	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,28:0.29:98
chr16	8722629	rs2270286	G	C	5988.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:85,278:0.77:363
chr16	8728953	rs1731044	C	T	7124.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	8729254	rs3108687	C	A	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	8729275	rs1641040	T	C	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	8729323	rs1731043	A	T	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	8732733	rs1362345	C	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	8732882	rs5815485	CA	C	7879.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=23.81;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr16	8733071	rs1641048	A	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	8734830	.	G	GCTGGCTGT	495	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=1;HapScore=1;MGOF=34;MMLQ=27;MQ=65.58;NF=21;NR=14;PP=495;QD=14.3714285714;SC=TGGCTGGCTGGCTGGCTGGCT;SbPval=0.46;Source=Platypus;TC=43;TCF=27;TCR=16;TR=35;WE=8734838;WS=8734820;set=Platypus	GT:AD:AF:DP	1/1:8,35:0.81:43
chr16	8735120	rs8062990	T	C	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	8735200	rs8045911	G	A	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	8735212	rs1629322	T	C	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	8735245	rs1641055	C	T	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr16	8735355	rs1641056	A	G	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	8736028	rs1614616	T	C	11615.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr16	8736150	rs1615559	A	C	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	8736246	rs1731007	G	A	17141.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr16	8736499	rs1618219	C	T	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	8738350	rs11645418	C	T	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr16	8738398	rs1641065	A	G	13644.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,512:1.00:512
chr16	8738427	rs1641066	T	C	20198.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	1/1:0,757:1.00:757
chr16	8738499	rs1731000	G	A	16828.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr16	8738579	rs1641067	A	G	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	8738622	rs9933132	C	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	8739954	rs1641070	G	A	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	8740015	rs1730994	A	C	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	8740418	rs1641072	T	C	14851.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr16	8740503	rs1730992	G	A	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	8740653	rs1641073	C	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.63;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	8829715	rs1640998	T	C	5337.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:77,249:0.76:326
chr16	8832491	rs7205552	T	G	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=2.396;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:74,33:0.31:107
chr16	8839954	rs1731017	A	G	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:30,96:0.76:126
chr16	8840025	rs2103340	C	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr16	8841794	rs753071	T	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.82;ReadPosRankSum=-0.484;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr16	8841960	rs1641010	T	C	2743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=-1.212;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:32,129:0.80:161
chr16	8842128	rs1641011	T	A	219.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.98;ReadPosRankSum=-0.551;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr16	8851767	rs12930438	C	T	7790.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:5,311:0.98:316
chr16	8858580	rs2302608	T	A	13555.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr16	8858700	rs112675542	GCA	G	1293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DB;DP=927;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=2.362;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:585,151:0.21:736
chr16	8859997	rs12448959	G	C	11993.77	.	AC=1;AF=0.500;AN=2;DB;DP=746;set=Intersection	GT:AD:AF:DP	0/1:182,558:0.75:740
chr16	8862212	rs8049072	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	8862506	rs1273406	C	A	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	8862592	rs1273407	T	C	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr16	8868776	rs1641022	C	A	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:26,125:0.83:151
chr16	8873456	rs1079348	T	C	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.465;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:178,40:0.18:218
chr16	8873493	rs1079349	C	T	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	8873572	rs41305755	G	C	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.61;ReadPosRankSum=2.738;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:7,32:0.82:39
chr16	8873576	rs45545237	C	G	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.938;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.96;ReadPosRankSum=1.211;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,30:0.91:33
chr16	8895909	rs2304471	C	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-4.443;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:357,65:0.15:422
chr16	8896066	rs2304470	G	C	8953.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr16	8898458	rs8053440	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=2.727;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr16	8904877	rs34742119	T	TATG	1734.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	8907025	rs3743807	C	T	10057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=1.306;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:151,470:0.76:621
chr16	8907145	rs9924186	G	T	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	8948974	rs6898	T	C	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	8952113	rs62033507	C	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.620;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:67,26:0.28:93
chr16	8952117	rs4985008	C	T	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:31,77:0.71:108
chr16	8952248	rs988065	A	G	15474.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,601:1.00:601
chr16	8953081	rs8097	C	G	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,417:1.00:417
chr16	8988386	rs71155414	C	CG	127.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=0.253;QD=15.97;ReadPosRankSum=0.524;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr16	8988777	rs2304467	C	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:116,36:0.24:152
chr16	8989403	rs1677473	A	G	7083.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	8992342	rs2304465	G	A	11257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-2.670;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:171,529:0.76:700
chr16	8992828	rs2289109	G	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:54,18:0.25:72
chr16	8992868	rs2437724	AC	CA	10018.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr16	8993633	.	T	C	4259.77	.	AC=1;AF=0.500;AN=2;DP=258;set=Intersection	GT:AD:AF:DP	0/1:53,192:0.78:245
chr16	8995177	rs60094465	GA	G	410.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.079;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=0.314;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:4,28:0.88:32
chr16	8995927	rs2304466	G	A	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=0.452;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:110,27:0.20:137
chr16	9004564	rs2447916	C	A	15806.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,608:1.00:608
chr16	9010213	rs7195624	T	G	270.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	9010446	rs57510291	A	AC	5124.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;MQ=60.24;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	9010826	.	T	TA	453.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=0.968;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:6,31:0.84:37
chr16	9014350	rs1677470	T	C	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	9014385	rs7189170	G	A	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	9014434	rs2447912	T	G	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	9015252	rs30761	A	T	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.92;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	9015258	rs9940652	T	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	9017061	rs139138924	T	TACAACGATGTGGGGGTTTGTAGTTGCATCATTTAA	5115.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=69.13;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	9030444	rs1382390	C	G	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	9210373	rs8045589	A	T	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.81;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	9943471	rs56155349	T	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr16	10524957	rs34430103	G	T	15071.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr16	10525230	rs34404959	T	C	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	10527613	rs7205853	C	A	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	10532211	rs1532824	A	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	10566146	rs4453490	G	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	10567751	rs56766112	C	CTTTTTTT	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	10567984	rs62027485	G	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	10625605	rs111364972	GATGAATGAATGA	G	262.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,10:0.20:50
chr16	10625997	rs7194566	G	A	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-1.796;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:435,91:0.17:526
chr16	10626122	rs12928389	G	C	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.298;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:122,30:0.20:152
chr16	10631912	rs2279868	C	T	4600.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:37,205:0.85:242
chr16	10631945	rs1504883	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-1.669;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:114,22:0.16:136
chr16	10631985	rs1504884	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	10769958	rs2719710	T	C	16773.77	.	AC=1;AF=0.500;AN=2;DB;DP=1104;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:282,815:0.74:1097
chr16	10770075	rs2719711	A	G	4027.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:60,175:0.74:235
chr16	10770091	rs2719712	T	C	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:40,117:0.75:157
chr16	10775855	rs12918646	G	A	4505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=-1.588;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:41,203:0.83:244
chr16	10783088	.	TA	T	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=5.150;QD=1.77;ReadPosRankSum=0.693;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:135,48:0.26:183
chr16	10783906	rs117004475	G	A	11156.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:195,516:0.73:711
chr16	10783945	.	G	A	3481.77	.	AC=1;AF=0.500;AN=2;DP=465;set=Intersection	GT:AD:AF:DP	0/1:281,184:0.40:465
chr16	10788106	rs2251984	A	G	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:43,146:0.77:189
chr16	10788129	rs2251985	G	T	5076.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:67,217:0.76:284
chr16	10788406	rs9922129	G	T	14635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.55;ReadPosRankSum=0.193;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:171,663:0.79:834
chr16	10837913	rs2233531	C	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:82,27:0.25:109
chr16	10849726	rs2233537	G	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=5.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.142;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:122,37:0.23:159
chr16	10851857	.	T	C	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.632;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:284,68:0.19:352
chr16	10855521	rs36097495	CT	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.294;QD=0.68;ReadPosRankSum=0.367;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:125,38:0.23:163
chr16	10861716	rs2233540	T	C	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.537;QD=2.87;ReadPosRankSum=-0.866;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:184,55:0.23:239
chr16	10912391	rs140457890	C	T	19067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=1083;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=1.042;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:203,851:0.81:1054
chr16	10989374	rs11074937	C	T	10095.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr16	10992715	rs6498121	T	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:150,54:0.26:204
chr16	10995145	rs45513895	T	C	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr16	10995850	rs6498124	G	T	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	10995933	rs8046121	A	G	13514.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr16	10996332	rs6498125	C	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	11001743	rs2229320	G	A	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-1.643;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:290,101:0.26:391
chr16	11002133	rs4781018	C	G	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	11002904	rs2228238	G	A	11644.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr16	11002927	rs7197779	A	G	16709.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr16	11004150	rs4781019	C	T	4470.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:80,208:0.72:288
chr16	11009587	rs7500869	C	A	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:40,159:0.80:199
chr16	11012169	rs12931898	A	G	4655.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:71,197:0.74:268
chr16	11015906	rs6498134	A	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	11017058	rs4781024	G	A	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DB;DP=853;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-1.897;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:670,168:0.20:838
chr16	11051699	.	A	G	9297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0.000;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=-1.856;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:145,440:0.75:585
chr16	11056378	rs16957839	C	T	7183.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:100,331:0.77:431
chr16	11063011	rs2302558	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr16	11063214	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.217;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr16	11064865	rs35498388	AT	A	450.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=-1.140;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:16,46:0.74:62
chr16	11070973	rs16957855	C	T	886.82	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr16	11136048	rs2302557	C	G	4991.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:57,229:0.80:286
chr16	11137978	rs8052325	A	G	6349.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:82,285:0.78:367
chr16	11154577	rs112716725	A	AT	214.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.050;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr16	11154770	rs2286973	G	A	5673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=-1.448;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:97,267:0.73:364
chr16	11214655	rs12925474	T	G	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=-0.993;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:20,65:0.76:85
chr16	11214668	rs3217121	AAC	A	845.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr16	11250413	rs7189563	C	A	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:32,121:0.79:153
chr16	11250774	rs370045010	GC	G	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.889;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr16	11260440	rs11643123	A	G	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:69,201:0.74:270
chr16	11349403	rs27829	A	C	3693.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	11350020	.	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=2.475;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:135,29:0.18:164
chr16	11350059	rs27831	T	C	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	11350155	rs33977706	C	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-1.123;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr16	11362729	rs11640138	G	A	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.725;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:343,115:0.25:458
chr16	11367143	rs438289	G	A	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.228;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.018;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:313,60:0.16:373
chr16	11367154	rs429744	C	T	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.423;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.774;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:341,70:0.17:411
chr16	11367477	rs2301127	G	A	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	11369930	rs1646022	C	G	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.258;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:217,62:0.22:279
chr16	11374866	rs737008	G	T	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	11439303	rs12149160	G	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	11439496	rs11545336	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr16	11439639	rs918737	T	C	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	11439679	rs918738	C	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	11439733	rs918739	G	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	11444403	rs2032929	T	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	11444425	rs28627609	C	T	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-2.038;QD=19.30;ReadPosRankSum=-0.226;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:10,65:0.87:75
chr16	11444430	rs2032930	T	G	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=40.36;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	11444454	rs57767216	GA	G	2167.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:12,126:0.91:138
chr16	11444469	rs2032931	C	T	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	11444572	rs7204628	A	C	4259.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:59,202:0.77:261
chr16	11444726	rs6498185	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr16	11537347	.	A	AAGAGAGAGAGAG,AAGAGAGAGAGAGAG	4574.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.50;QD=91.49;SOR=1.157;set=HC	GT:AD:AF:DP	1/2:0,17,33:0.34,0.66:50
chr16	11537471	rs12925081	C	T	4550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=-3.632;QD=17.44;ReadPosRankSum=0.765;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:58,203:0.78:261
chr16	11540596	rs4359463	A	C	7491.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:118,334:0.74:452
chr16	11540712	rs4500747	T	C	5616.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:80,264:0.77:344
chr16	11541685	rs4296278	A	G	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:48,125:0.72:173
chr16	11541896	rs4238608	G	A	9119.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:136,425:0.76:561
chr16	11542894	rs4467099	C	T	11598.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:127,533:0.81:660
chr16	11544673	rs12932948	G	A	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:58,148:0.72:206
chr16	11544741	rs6498192	G	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:35,84:0.71:119
chr16	11544824	rs6498194	G	A	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr16	11550979	rs4559925	C	T	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	11553842	rs7206698	G	C	18693.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,727:1.00:727
chr16	11554737	rs8046254	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	11554867	rs8050530	C	T	8877.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr16	11555016	rs6498202	C	G	15528.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr16	11556016	.	G	A	1998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.133;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:562,163:0.22:725
chr16	11556121	rs4254342	A	G	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	11643394	rs149712652	G	A	9703.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:148,444:0.75:592
chr16	11643631	rs9935945	G	A	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-1.047;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:250,76:0.23:326
chr16	11643727	rs79852290	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr16	11645776	rs35493477	CT	C	682.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,49:0.78:63
chr16	11650325	rs3743582	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-1.582;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:206,41:0.17:247
chr16	11690308	rs113749419	A	AGAGGAGGAG	1603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.390;QD=14.32;ReadPosRankSum=2.391;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:36,76:0.68:112
chr16	11769948	rs1050068	C	T	1996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=801;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=2.866;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:620,172:0.22:792
chr16	11769963	rs1050069	C	T	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DB;DP=826;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.662;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:639,174:0.21:813
chr16	11773662	rs3190321	C	G	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	11773733	rs8191352	C	G	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.241;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=9.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.950;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr16	11773743	rs7188511	G	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.42;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	11797365	rs71406275	TAC	T	1342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.98;ReadPosRankSum=0.767;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:9,55:0.86:64
chr16	11824056	rs11639945	T	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	11824639	.	AAAAAAT	A	5948.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DP=308;ExcessHet=3.0103;FS=6.267;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=2.938;QD=29.74;ReadPosRankSum=-1.165;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:50,150:0.75:200
chr16	11828018	rs4780398	A	G	1225.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.508;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.54;ReadPosRankSum=1.531;SOR=1.333;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr16	11850003	rs7198247	A	G	7061.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:105,315:0.75:420
chr16	11857566	.	AATATATATATATATATATATATATAT	A	528.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=6.690;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.000;QD=37.77;ReadPosRankSum=1.766;SOR=2.788;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr16	11859341	rs7199993	A	G	3649.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:88,175:0.67:263
chr16	11862376	rs34038330	G	GA	433.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.727;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.375;QD=14.96;ReadPosRankSum=-0.426;SOR=0.094;set=HC	GT:AD:AF:DP	1/1:4,25:0.86:29
chr16	11940390	rs8052900	T	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.439;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:93,21:0.18:114
chr16	11945231	rs2075158	T	C	2833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;ClippingRankSum=0.000;DB;DP=1296;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.314;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:1031,261:0.20:1292
chr16	11969724	rs33657	G	C	12807.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:165,587:0.78:752
chr16	11980878	rs34304551	G	GT	491.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.212;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.711;QD=11.18;ReadPosRankSum=0.524;SOR=0.180;set=HC	GT:AD:AF:DP	1/1:9,35:0.80:44
chr16	11981487	rs3752426	G	A	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-0.882;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:240,66:0.22:306
chr16	11991944	rs33635	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr16	12008941	rs33619	T	G	9635.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:131,422:0.76:553
chr16	12009150	rs28653099	C	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=7.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-1.468;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr16	12009279	rs424518	A	G	10006.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.758;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.53;ReadPosRankSum=-0.498;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:2,406:1.00:408
chr16	12009304	rs11544193	C	A	2454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=9.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=4.489;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:440,171:0.28:611
chr16	12009530	.	CCCG	C	836.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.974;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:394,50:0.11:444
chr16	12009614	rs435108	G	A	9825.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr16	12009781	rs434762	G	A	45558.77	.	AC=2;AF=1.00;AN=2;DB;DP=1751;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,1740:1.00:1740
chr16	12021332	rs256390	G	A	11084.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.784;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;MQRankSum=-0.099;QD=25.96;ReadPosRankSum=-1.467;SOR=0.277;set=HC	GT:AD:AF:DP	1/1:1,426:1.00:427
chr16	12031390	rs677507	C	T	9547.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.24;QD=25.06;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr16	12031448	rs636664	T	C	12260.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.87;QD=25.07;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,489:1.00:489
chr16	12059038	rs11570139	C	T	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr16	12060163	rs373496	A	G	8534.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr16	12070486	rs446289	T	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	12136954	rs1703492	A	C	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,250:0.99:252
chr16	12142130	rs56363861	C	T	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	12142172	rs3826097	T	G	7793.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=45.31;SOR=1.412;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	12142175	rs3826098	C	G	7817.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=43.92;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	12145683	rs373216147	CT	C	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=5.751;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-2.077;QD=2.34;ReadPosRankSum=1.600;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:81,49:0.38:130
chr16	12162969	rs1641843	A	G	10213.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr16	12172873	rs4352067	C	A	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	12181510	rs11648468	C	T	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.349;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:66,15:0.19:81
chr16	12181702	rs11648228	G	T	1795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.293;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:498,149:0.23:647
chr16	12183500	rs12596549	C	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:49,15:0.23:64
chr16	12223637	rs62038898	A	G	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr16	12296803	rs1701115	G	T	14305.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:2,556:1.00:558
chr16	12297011	rs9933762	C	G	20699.77	.	AC=1;AF=0.500;AN=2;DB;DP=1559;set=Intersection	GT:AD:AF:DP	0/1:572,970:0.63:1542
chr16	12297247	.	A	ATAGTGTGGCCCTGATGTCAGATGGACTGGTGGCATTGGAGGTGACGTCTCTGAAGTTGTGTAGTGAGGCCTTGCTGTCAGGTGGACTGGTGGCATTGGAGGTGACAGCTCTGAAGTTGTGTAGTGTGACCCTGGTGTCAGGTGGACTGGTGGCATTGGAGGTGACAGCTCTGAAGTTGTG	13003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DP=1569;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.717;QD=8.37;ReadPosRankSum=2.215;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:1387,167:0.11:1554
chr16	12297562	rs1701113	G	A	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	12371673	rs146684343	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	12371915	rs12448443	T	C	4703.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:73,221:0.75:294
chr16	12449855	rs7190509	T	C	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:10,67:0.87:77
chr16	12449925	rs11075062	C	G	6284.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:64,280:0.81:344
chr16	12450163	rs4781211	C	G	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,58:0.71:82
chr16	12536703	rs11075077	A	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	12618465	rs11075087	G	C	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,71:0.69:103
chr16	12621176	rs2269446	C	G	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:17,72:0.81:89
chr16	12758966	rs1713480	T	C	18196.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,709:1.00:709
chr16	12759027	rs1713479	A	G	6628.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr16	12798992	rs115465506	T	A	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.76;ReadPosRankSum=1.333;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr16	12897522	rs3748977	G	A	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:74,150:0.67:224
chr16	12897578	rs3748976	G	T	12713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=-2.752;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:209,590:0.74:799
chr16	12897744	rs3833561	C	CGGGGCGGGACT	4320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.097;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=11.868;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=2.695;QD=17.49;ReadPosRankSum=1.585;SOR=1.425;set=HC	GT:AD:AF:DP	0/1:64,183:0.74:247
chr16	13297242	rs13331224	C	T	10052.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	14026007	rs254942	G	A	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	14026902	rs11337706	CA	C	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=1.875;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:43,53:0.55:96
chr16	14031520	rs31869	G	A	132.84	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	14280753	.	T	C	2195.77	.	AC=1;AF=0.500;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	0/1:40,98:0.71:138
chr16	14334526	rs45520934	C	T	6149.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:105,277:0.73:382
chr16	14342664	rs72785434	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr16	14646096	rs78379650	C	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:9,47:0.84:56
chr16	14649626	rs16963773	C	T	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr16	14674918	rs116955432	T	C	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr16	14675943	rs72787692	C	G	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:38,130:0.77:168
chr16	14678788	rs147374162	TA	T	211.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr16	14687144	rs75783314	A	G	7664.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:103,356:0.78:459
chr16	14700254	rs4782156	G	A	2789.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.657;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.470;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.041;QD=26.57;ReadPosRankSum=2.925;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:3,102:0.97:105
chr16	14738525	rs376559546	CT	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-1.710;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr16	14742400	rs11546303	T	G	6397.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:71,295:0.81:366
chr16	14763076	rs114300158	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.77;ReadPosRankSum=0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr16	14772551	rs117954937	C	T	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr16	14951573	.	G	A	8397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.53;MQRankSum=-17.459;QD=16.03;ReadPosRankSum=-0.838;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:142,382:0.73:524
chr16	14951630	rs199610264	CT	C	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=48.56;MQRankSum=0.037;QD=7.29;ReadPosRankSum=-0.036;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:12,35:0.74:47
chr16	14958438	rs2445646	A	G	2957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.735;ClippingRankSum=0.000;DB;DP=721;ExcessHet=3.0103;FS=4.694;MLEAC=1;MLEAF=0.500;MQ=49.04;MQRankSum=-4.327;QD=4.11;ReadPosRankSum=-6.345;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:518,201:0.28:719
chr16	14958514	rs117835774	A	G	3514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.597;ClippingRankSum=0.000;DB;DP=1088;ExcessHet=3.0103;FS=3.969;MLEAC=1;MLEAF=0.500;MQ=53.93;MQRankSum=-20.083;QD=3.24;ReadPosRankSum=-1.921;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:835,249:0.23:1084
chr16	14958633	.	G	A	961.77	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:90,47:0.34:137
chr16	15068908	rs28418438	C	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-3.273;QD=1.38;ReadPosRankSum=-0.975;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:118,22:0.16:140
chr16	15082859	rs71374759	C	T	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=0.990;QD=1.12;ReadPosRankSum=-0.257;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:522,102:0.16:624
chr16	15082865	rs4985167	C	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=1.364;QD=0.18;ReadPosRankSum=1.473;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:574,81:0.12:655
chr16	15083569	.	C	CGCA	720.73	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr16	15091589	rs11421981	C	CT	2276.73	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:107,147:0.58:254
chr16	15092116	rs6498535	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr16	15098047	rs11549900	C	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=1.190;QD=0.12;ReadPosRankSum=0.073;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:320,44:0.12:364
chr16	15100202	rs71271216	A	G	3757.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:23,162:0.88:185
chr16	15109900	.	G	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=47.91;MQRankSum=-6.303;QD=1.02;ReadPosRankSum=1.134;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:151,26:0.15:177
chr16	15110077	rs4262938	C	T	7623.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:328,363:0.53:691
chr16	15116400	rs4985161	T	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:86,39:0.31:125
chr16	15116521	rs4985160	C	T	10646.77	.	AC=1;AF=0.500;AN=2;DB;DP=1003;set=Intersection	GT:AD:AF:DP	0/1:465,538:0.54:1003
chr16	15116625	rs1058637	G	T	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:80,105:0.57:185
chr16	15120411	rs62039476	T	C	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.231;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=45.699;MLEAC=1;MLEAF=0.500;MQ=49.47;MQRankSum=-7.160;QD=5.59;ReadPosRankSum=-3.019;SOR=5.829;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr16	15126890	rs12926897	C	T	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.756;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:330,98:0.23:428
chr16	15128416	rs35811052	A	G	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.980;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.453;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:225,56:0.20:281
chr16	15129459	rs4985155	A	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:93,32:0.26:125
chr16	15129940	rs3198697	C	T	4589.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:82,211:0.72:293
chr16	15129970	rs7200543	A	G	1666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-2.017;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:269,106:0.28:375
chr16	15131962	rs1135999	A	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:161,39:0.20:200
chr16	15131974	rs1136001	G	T	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.481;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:181,45:0.20:226
chr16	15132108	rs2740	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:67,20:0.23:87
chr16	15133783	rs34345533	C	CT	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.079;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:91,27:0.23:118
chr16	15133889	rs14347	T	G	2068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.435;QD=3.47;ReadPosRankSum=0.933;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:446,151:0.25:597
chr16	15135071	rs7498279	G	A	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	15135269	rs9926473	T	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	15155898	rs2966157	T	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	15159022	.	CA	C	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.589;ClippingRankSum=0.000;DP=321;ExcessHet=3.0103;FS=4.385;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-3.098;QD=1.22;ReadPosRankSum=-0.945;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:219,79:0.27:298
chr16	15162143	.	TA	T	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=1.068;QD=0.42;ReadPosRankSum=0.269;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:62,18:0.23:80
chr16	15166891	rs2941256	T	C	6974.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:99,313:0.76:412
chr16	15168760	rs4985147	T	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.906;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr16	15170452	rs2966183	C	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:79,151:0.66:230
chr16	15173746	rs2941253	G	A	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	15178688	rs8061051	C	A	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	15187912	rs11075256	G	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.936;QD=1.70;ReadPosRankSum=0.049;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:164,38:0.19:202
chr16	15493046	rs153001	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.452;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=1.342;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr16	15494721	rs62039092	T	C	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-1.098;QD=15.90;ReadPosRankSum=-1.405;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr16	15596142	rs12448500	G	C	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	15626831	rs12918517	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,18:0.27:67
chr16	15626960	rs12919246	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.179;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:135,32:0.19:167
chr16	15693033	rs76869731	C	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=11.553;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=0.736;QD=3.60;ReadPosRankSum=-1.894;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr16	15695059	rs2071331	A	G	2304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=-0.611;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:48,123:0.72:171
chr16	15696480	rs71293163	A	AAGGAAAGAAGGAGGGAGGCAGAG	1691.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=58.34;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	15705605	rs7185421	A	G	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:42,97:0.70:139
chr16	15710768	rs78517747	G	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr16	15710843	rs138906632	A	G	2860.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:68,130:0.66:198
chr16	15727459	rs5815838	AT	A	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.880;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.801;QD=8.12;ReadPosRankSum=0.613;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:25,42:0.63:67
chr16	15758514	.	G	GT	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-1.351;QD=2.34;ReadPosRankSum=0.184;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr16	15771601	rs6498567	T	C	2454.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:61,118:0.66:179
chr16	15781054	rs8044738	A	G	5551.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:65,257:0.80:322
chr16	15790607	rs17283846	C	T	7338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=-1.970;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:107,343:0.76:450
chr16	15808869	.	G	A	18862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DP=1098;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.27;ReadPosRankSum=1.347;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:227,865:0.79:1092
chr16	15811023	rs1050163	C	T	23025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=1411;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=1.556;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:344,1057:0.75:1401
chr16	15811062	rs1050162	C	T	24095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=1493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-1.308;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:373,1102:0.75:1475
chr16	15812354	rs75982287	C	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=1.700;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr16	15813211	rs11646134	G	T	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:47,130:0.73:177
chr16	15813633	rs17284411	G	A	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:11,60:0.85:71
chr16	15813945	rs2075512	C	T	5396.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:49,232:0.83:281
chr16	15818141	rs2075511	A	C	4643.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:101,225:0.69:326
chr16	15818310	rs11130	G	A	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:33,106:0.76:139
chr16	15820863	rs16967494	C	T	1990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=799;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-1.389;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:618,169:0.21:787
chr16	15838940	rs2384934	G	C	1834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.484;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:402,140:0.26:542
chr16	15839034	rs1050113	G	A	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=1.140;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:445,129:0.22:574
chr16	15843899	rs6498570	G	A	8908.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr16	15850204	rs2272554	A	G	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.358;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:229,98:0.30:327
chr16	15853596	rs2280764	C	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-3.415;SOR=1.131;set=HC	GT:AD:AF:DP	0/1:45,8:0.15:53
chr16	15869801	rs2072619	T	C	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:26,82:0.76:108
chr16	15870032	rs34341838	A	G	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=3.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-1.286;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:304,93:0.23:397
chr16	15917197	rs1050111	G	A	2169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.957;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:579,173:0.23:752
chr16	15917321	rs2272552	T	C	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-1.304;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:305,87:0.22:392
chr16	15961192	rs12598941	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.56;ReadPosRankSum=0.309;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr16	15961351	rs15784	T	C	4362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.48;ReadPosRankSum=-0.185;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:38,110:0.74:148
chr16	15961356	rs12598966	C	T	4407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.62;ReadPosRankSum=0.792;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:43,111:0.72:154
chr16	15961369	rs60244915	G	A	2952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=-0.892;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:43,140:0.77:183
chr16	15961513	rs12599003	C	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr16	15967224	rs7193885	A	C	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr16	15967361	rs10656021	T	TCTA	6096.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.787;QD=16.80;ReadPosRankSum=0.436;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:84,279:0.77:363
chr16	15973605	rs12597051	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr16	15973628	rs12596557	A	G	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=1.117;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr16	15973653	rs12597053	T	A	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=1.644;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:16,36:0.69:52
chr16	15973654	rs8045082	G	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.01;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	15973774	rs12598817	C	G	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=0.977;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:36,93:0.72:129
chr16	15982258	rs3213476	A	G	18921.77	.	AC=1;AF=0.500;AN=2;DB;DP=1128;set=Intersection	GT:AD:AF:DP	0/1:223,877:0.80:1100
chr16	16108282	rs4148337	T	C	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=25.80;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	16110244	rs185005	C	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	16110253	rs246215	T	C	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	16126758	rs924137	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.87;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	16126764	rs924138	T	C	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.73;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	16161976	rs35604	G	A	17451.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:1,684:1.00:685
chr16	16162019	rs35605	T	C	20997.77	.	AC=2;AF=1.00;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	1/1:1,819:1.00:820
chr16	16184232	rs2074087	C	G	7735.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	16200756	rs11075296	C	T	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	16205141	rs4780592	A	G	18400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.324;QD=38.90;ReadPosRankSum=2.880;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:43,430:0.91:473
chr16	16205143	rs4780593	A	G	18817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.319;QD=38.80;ReadPosRankSum=2.499;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:43,442:0.91:485
chr16	16205161	rs4238623	G	A	19457.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:61,498:0.89:559
chr16	16205167	rs111263400	G	GTGGGGC	10287.73	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:67,450:0.87:517
chr16	16205449	rs3851716	G	A	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	16219596	rs113369901	G	GAA,GAAAAAAAA	6470.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.93;QD=30.52;SOR=1.002;set=HC	GT:AD:AF:DP	1/2:0,174,38:0.82,0.18:212
chr16	16230290	rs212087	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=0.044;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:156,47:0.23:203
chr16	16244129	rs212097	T	C	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.916;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:269,89:0.25:358
chr16	16251435	rs3896244	G	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	16253283	rs56822940	GC	G	15449.73	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:11,539:0.98:550
chr16	16255195	rs3851721	T	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	16263837	rs7201980	T	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	16267079	rs11866320	A	G	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	16271357	rs6416668	T	C	27552.77	.	AC=2;AF=1.00;AN=2;DB;DP=1083;set=Intersection	GT:AD:AF:DP	1/1:0,1074:1.00:1074
chr16	16271409	rs9924755	G	A	16628.77	.	AC=1;AF=0.500;AN=2;DB;DP=1022;set=Intersection	GT:AD:AF:DP	0/1:242,769:0.76:1011
chr16	16272508	rs2283508	G	A	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:13,53:0.80:66
chr16	16272670	rs7500834	T	C	12533.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr16	16278050	rs212073	C	T	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.160;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=14.88;ReadPosRankSum=0.973;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr16	16278695	rs2239323	A	T	4733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=0.121;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:56,208:0.79:264
chr16	16278863	rs8058694	G	T	16126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.548;QD=30.60;ReadPosRankSum=1.671;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:120,407:0.77:527
chr16	16278869	rs8058696	G	C	15688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.531;QD=32.08;ReadPosRankSum=0.517;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:106,383:0.78:489
chr16	16278975	rs368726658	GC	G	597.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr16	16280889	rs7192265	C	T	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.36;ReadPosRankSum=-1.016;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:18,28:0.61:46
chr16	16280895	rs7192961	A	G	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.464;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.11;ReadPosRankSum=-0.997;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,31:0.61:51
chr16	16280921	rs8056103	T	C	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	16281007	rs12931472	A	G	6873.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:103,324:0.76:427
chr16	16281154	rs4369696	C	A	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:46,123:0.73:169
chr16	16284272	rs7193932	C	T	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	16286614	rs6498618	G	C	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	16291816	rs58394656	G	C	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.108;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.980;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:209,81:0.28:290
chr16	16291858	rs12929920	G	C	11600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;ClippingRankSum=0.000;DB;DP=709;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-1.419;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:174,525:0.75:699
chr16	16291871	rs9940089	G	C	14956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.664;ClippingRankSum=0.000;DB;DP=903;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=-0.036;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:223,664:0.75:887
chr16	16306192	rs116914614	G	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.08;MQRankSum=-4.968;QD=3.67;ReadPosRankSum=1.069;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:115,44:0.28:159
chr16	16350133	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=50.99;MQRankSum=-5.724;QD=0.68;ReadPosRankSum=-0.965;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr16	17190040	rs3889206	G	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.484;QD=3.28;ReadPosRankSum=-1.173;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:99,32:0.24:131
chr16	17202801	rs34511974	G	A	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.030;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:406,125:0.24:531
chr16	17221423	rs4782034	C	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	17221755	rs3812961	T	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=5.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.757;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr16	17228368	rs12708815	G	A	13417.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr16	17432427	rs4782002	T	C	13330.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr16	17564658	rs117041807	G	C	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.900;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=-0.937;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:23,67:0.74:90
chr16	18549711	.	C	CAA	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.11;MQRankSum=-2.634;QD=12.08;ReadPosRankSum=0.941;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:15,54:0.78:69
chr16	18593648	.	G	GA	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.83;MQRankSum=-3.370;QD=1.37;ReadPosRankSum=0.820;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:121,33:0.21:154
chr16	18805704	rs78436134	A	G	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	18806023	rs71382566	A	G	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:16,57:0.78:73
chr16	18823379	rs2606556	T	C	9057.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr16	18828927	rs2270505	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr16	18847416	rs3816919	G	A	7610.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:101,343:0.77:444
chr16	18852818	rs7191057	G	A	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:28,90:0.76:118
chr16	18852853	rs36121165	T	C	4096.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:58,178:0.75:236
chr16	18853744	rs12926959	T	C	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:60,191:0.76:251
chr16	18858727	rs2650615	A	C	5502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=0.560;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:68,246:0.78:314
chr16	18858999	rs72373664	CTTTGTAAG	C	1726.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr16	18859430	rs12926531	T	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.58;ReadPosRankSum=-0.728;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr16	18861335	rs2650613	A	G	4779.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:65,225:0.78:290
chr16	18865324	rs59703706	ATAGGAGG	AAGGAGG,A	2326.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=76;set=Intersection	GT:AF:DP	0/1:0.83:70
chr16	18865326	rs58740437	AGGAGGC	A	2326.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.24;ReadPosRankSum=-1.730;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:12,58:0.83:70
chr16	18865332	.	C	A	1492	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=26;MQ=59.61;NF=12;NR=25;PP=1492;QD=41.2640868256;SC=GCATAGGAGGCTCCTACTGTC;SbPval=0.64;Source=Platypus;TC=46;TCF=16;TCR=30;TR=37;WE=18865340;WS=18865314;set=Platypus	GT:AD:AF:DP	1/0:9,37:0.80:46
chr16	18866320	rs66505987	TCTGCACCACCTC	T	1315.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:5,33:0.87:38
chr16	19041491	rs4381586	T	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	19041595	rs28583298	G	A	2611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.74;ReadPosRankSum=0.071;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:35,121:0.78:156
chr16	19046960	rs12933286	T	C	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.716;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:161,34:0.17:195
chr16	19049378	rs8043993	A	G	5975.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:64,267:0.81:331
chr16	19051520	rs11074355	A	G	150.28	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr16	19056069	rs55792501	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	19056090	.	CAAAA	C	58.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.92;ReadPosRankSum=-2.189;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr16	19056769	rs12051270	G	A	4495.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:38,202:0.84:240
chr16	19067933	rs17854511	G	A	6743.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:85,299:0.78:384
chr16	19079095	rs4531717	T	G	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	19079997	rs139382640	AAAG	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-1.267;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr16	19080184	rs4630530	C	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=-1.292;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:15,33:0.69:48
chr16	19080227	rs75015998	C	CTG	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	19083221	rs4782202	A	G	8654.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr16	19085298	rs11074359	C	T	5527.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:59,257:0.81:316
chr16	19183957	rs113855661	C	CT	1159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.396;QD=7.53;ReadPosRankSum=-0.498;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:68,86:0.56:154
chr16	19222713	rs229018	T	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.002;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.619;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:335,76:0.18:411
chr16	19278429	.	TA	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.655;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr16	19309812	rs1548448	T	C	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:14,62:0.82:76
chr16	19333111	rs8049175	T	C	5847.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr16	19333153	rs8047832	A	C	9866.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr16	19333224	rs8048432	G	A	8457.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr16	19333241	rs6497343	G	C	6605.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	19451987	rs148052684	C	T	5496.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:81,251:0.76:332
chr16	19452068	rs192120229	C	T	4942.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:74,226:0.75:300
chr16	19455284	rs8052298	T	C	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:3,52:0.95:55
chr16	19455615	rs4782247	G	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=-0.063;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr16	19460767	rs74013780	C	A	7794.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:151,364:0.71:515
chr16	19460842	rs6497373	A	G	8484.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:146,395:0.73:541
chr16	19471571	rs36019638	G	A	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.523;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.959;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:268,86:0.24:354
chr16	19471665	rs6497375	T	C	9007.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:150,418:0.74:568
chr16	19481220	rs58331737	CTT	C	2400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.458;QD=15.79;ReadPosRankSum=0.014;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:46,106:0.70:152
chr16	19485720	rs34072254	T	TA	3118.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:25,114:0.82:139
chr16	19485745	rs9925709	C	T	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:14,72:0.84:86
chr16	19492898	rs7185836	A	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:6,38:0.86:44
chr16	19498565	rs34170384	A	G	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.308;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:294,86:0.23:380
chr16	19503598	rs1475962	C	T	6300.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:98,293:0.75:391
chr16	19503770	rs1967950	T	G	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.02;ReadPosRankSum=0.444;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr16	19503773	rs1967951	T	G	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.02;ReadPosRankSum=0.338;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr16	19505406	rs1475964	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr16	19505730	rs2245423	T	C	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,67:0.68:98
chr16	19505751	rs2856608	G	A	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr16	19508573	rs2187659	A	G	2308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.54;ReadPosRankSum=1.203;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:23,64:0.74:87
chr16	19508583	rs2187660	C	G	2039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.38;ReadPosRankSum=0.000;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:15,50:0.77:65
chr16	19509333	rs2245086	C	T	6751.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:93,317:0.77:410
chr16	19522394	rs12923369	A	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr16	19543981	rs12927277	G	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr16	19547747	rs226891	C	G	11297.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr16	19548116	rs7190666	G	A	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=921;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-1.386;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:724,193:0.21:917
chr16	19548152	rs179050	T	C	14606.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:180,674:0.79:854
chr16	19548290	rs7191012	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.627;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=9.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-1.228;SOR=1.311;set=HC	GT:AD:AF:DP	0/1:235,58:0.20:293
chr16	19556258	rs3841493	CAT	C	1101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.031;QD=5.43;ReadPosRankSum=0.721;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:163,40:0.20:203
chr16	19557844	rs112602419	G	GA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.977;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr16	19576013	rs226880	G	A	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:15,52:0.78:67
chr16	19576382	rs35102175	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.701;QD=0.82;ReadPosRankSum=-1.241;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr16	19580699	rs121235	A	G	11559.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr16	19584332	rs371889	A	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	19589695	rs35605554	C	CA	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.000;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr16	19589722	rs77656542	G	A	1777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.93;ReadPosRankSum=0.306;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:23,82:0.78:105
chr16	19592990	rs5816059	T	TC	1306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.608;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:240,73:0.23:313
chr16	19598717	rs226856	T	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-2.766;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:107,38:0.26:145
chr16	19612877	.	T	TA	30	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=3;HapScore=2;MGOF=2;MMLQ=26;MQ=60.14;NF=2;NR=2;PP=30;QD=23.4614401178;SC=CATCACAAGTTAAAGCCTGTC;SbPval=0.51;Source=Platypus;TC=23;TCF=14;TCR=9;TR=4;WE=19612885;WS=19612867;set=Platypus	GT:AD:AF:DP	1/0:19,4:0.17:23
chr16	19619355	rs6497388	G	C	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.023;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr16	19619602	rs11291600	CT	C	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.025;QD=2.40;ReadPosRankSum=-1.663;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:143,71:0.33:214
chr16	19640099	rs138081043	TTTTA	T	5185.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=44.32;SOR=2.163;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	19653534	rs11647156	A	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	19653700	rs11643482	T	C	12493.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr16	19663269	rs875648	T	C	11991.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr16	19680414	rs957675	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	19680546	rs957676	T	C	7844.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	19693729	rs3815036	C	T	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	19716505	rs739565	A	G	11296.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:219,523:0.70:742
chr16	19726275	rs11640454	C	T	3403.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:42,151:0.78:193
chr16	19799962	rs4782283	T	A	199.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	19868687	rs2729	G	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	19883082	rs172907	A	G	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.891;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:95,33:0.26:128
chr16	20322425	rs11647569	T	C	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	20322439	rs11642182	A	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	20327491	rs75747999	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr16	20327498	rs112083622	GT	G	672.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr16	20331737	rs73541251	C	G	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=881;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-1.191;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:692,176:0.20:868
chr16	20334679	rs4411505	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=2.275;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:163,27:0.14:190
chr16	20334807	.	ACCCCCCCCCC	TACCCCCCCGC	2989	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=11;HapScore=1;MGOF=37;MMLQ=27;MQ=59.47;NF=4,23;NR=136,24;PP=2989,1576;QD=20;SC=TTTTTGCTGTACCCCCCCCCC;SbPval=0.73;Source=Platypus;TC=190;TCF=7;TCR=183;TR=140,47;WE=20334834;WS=20334795;set=Platypus	GT:AD:AF:DP	0/1:285,47:0.14:332
chr16	20334807	.	ACCCCCCCCCC	ACCCCCCCCC	2989	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=11;HapScore=1;MGOF=37;MMLQ=27;MQ=59.47;NF=4,23;NR=136,24;PP=2989,1576;QD=20;SC=TTTTTGCTGTACCCCCCCCCC;SbPval=0.73;Source=Platypus;TC=190;TCF=7;TCR=183;TR=140,47;WE=20334834;WS=20334795;set=Platypus	GT:AD:AF:DP	0/1:50,140:0.74:190
chr16	20334807	rs368914613	AC	A,TC	10172.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=6.893;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.99;ReadPosRankSum=1.409;SOR=2.091;set=HC	GT:AD:AF:DP	1/2:10,299,98:0.73,0.24:407
chr16	20334808	rs4609857	C	A	2968.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.510;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=72.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-0.066;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:331,96:0.22:427
chr16	20334816	rs4544248	C	G	2991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=70.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.347;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:336,98:0.23:434
chr16	20334932	rs4393582	G	A	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	20337884	rs4632135	T	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=-1.692;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr16	20339131	rs4643330	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.905;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:117,40:0.25:157
chr16	20355651	rs8054296	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr16	20360101	rs7193058	G	A	10187.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	20361213	rs34234553	T	TA	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.122;QD=5.48;ReadPosRankSum=0.259;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr16	20370810	rs9652588	C	T	21935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=756;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.60;ReadPosRankSum=2.263;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:196,545:0.74:741
chr16	20370816	rs9652589	C	T	21910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.73;ReadPosRankSum=1.357;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:192,545:0.74:737
chr16	20370981	rs9929710	A	C	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr16	20373899	rs139748181	G	A	7362.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:95,337:0.78:432
chr16	20376734	rs8052918	A	G	4442.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:76,201:0.73:277
chr16	20376755	rs8054266	T	C	6033.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:97,273:0.74:370
chr16	20386115	rs4522429	T	C	14927.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr16	20410488	rs7185940	G	A	10054.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:139,459:0.77:598
chr16	20410547	rs9926580	C	T	8310.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:134,386:0.74:520
chr16	20410669	rs9928648	A	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr16	20429546	rs144548629	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr16	20442432	.	T	C	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=0.994;QD=1.91;ReadPosRankSum=1.993;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:207,50:0.19:257
chr16	20488803	rs1634306	T	A	6014.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.83;QD=25.38;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	20492000	rs146233716	A	G	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.66;QD=32.58;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	20498079	rs2072080	T	G	5163.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	20551855	rs28750179	A	G	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	20552075	rs16970280	G	T	11962.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr16	20554613	rs62035054	G	A	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=3.554;MLEAC=1;MLEAF=0.500;MQ=50.07;MQRankSum=-2.274;QD=3.04;ReadPosRankSum=-2.536;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:279,82:0.23:361
chr16	20557688	rs12927522	T	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.32;MQRankSum=-2.957;QD=2.68;ReadPosRankSum=-1.118;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:173,52:0.23:225
chr16	20565396	rs6497500	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.359;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr16	20565585	rs6497501	G	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-1.041;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:69,38:0.36:107
chr16	20570661	rs62035059	T	C	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.96;QD=28.46;SOR=1.926;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	20576048	rs112352583	C	A	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.51;MQRankSum=-6.016;QD=3.05;ReadPosRankSum=0.592;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:335,101:0.23:436
chr16	20602082	rs7498598	T	A	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.451;QD=3.29;ReadPosRankSum=1.944;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:277,93:0.25:370
chr16	20602163	rs28669334	A	G	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=3.116;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-0.834;QD=2.93;ReadPosRankSum=0.715;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:228,67:0.23:295
chr16	20602287	rs28736286	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.08;QD=30.59;SOR=4.235;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	20605328	rs11074464	C	T	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	20635418	rs3743690	C	T	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	20636814	rs2301672	G	A	23150.77	.	AC=2;AF=1.00;AN=2;DB;DP=916;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,899:1.00:899
chr16	20638576	rs1692729	A	T	12103.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr16	20749632	rs200704193	CA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.334;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr16	20750498	.	A	AT	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=5.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.709;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr16	20753123	rs234271	T	C	27187.77	.	AC=2;AF=1.00;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	1/1:0,1046:1.00:1046
chr16	20803249	.	G	GA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=2.352;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-2.347;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr16	20824666	.	CTT	C	612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=3.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.142;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:81,44:0.35:125
chr16	20827647	rs5816137	AT	A	1095.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.739;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.531;QD=13.20;ReadPosRankSum=-0.565;SOR=0.381;set=HC	GT:AD:AF:DP	1/1:8,75:0.90:83
chr16	20838553	rs112541646	A	G	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=2.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.589;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:342,75:0.18:417
chr16	20855309	rs9929443	A	G	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	20926781	rs11424042	C	CA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.100;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr16	20956098	.	GACAC	GAC,G	96.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=34;set=Intersection	GT:AF:DP	0/1:0.27:30
chr16	21030897	rs3095922	T	C	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	21033521	rs62034888	G	A	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	21071404	rs858204	G	A	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	21071499	rs858205	G	A	10028.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr16	21078693	rs861424	T	G	6794.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	21082168	rs704554	C	T	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	21123188	rs62034958	C	T	9963.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr16	21136477	rs7191215	A	G	6208.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	21148063	.	G	A	2807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.33;ReadPosRankSum=-0.171;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:32,130:0.80:162
chr16	21152073	rs7202719	CA	TG	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	21152481	rs8061542	G	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	21156829	rs6497538	G	A	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	21161526	rs7204599	A	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	21161551	rs66585774	AT	A	2593.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.29;QD=42.52;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	21161559	rs11074487	T	A	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.43;QD=36.93;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	21190853	rs1063087	A	C	10440.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr16	21210006	rs7189430	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	21215672	rs2075526	A	G	7000.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr16	21222596	rs2075519	C	A	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	21222941	rs2075521	C	A	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	21327273	rs12446322	G	A	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:23,60:0.72:83
chr16	21388110	rs2686119	T	C	3849.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:90,189:0.68:279
chr16	21396859	rs368310563	CT	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=5.450;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-7.490;QD=0.44;ReadPosRankSum=0.584;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:127,35:0.22:162
chr16	21397273	rs369341030	CTG	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-3.997;QD=1.43;ReadPosRankSum=0.192;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr16	21531111	rs7197243	T	C	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:240,109:0.31:349
chr16	21531494	rs42138	T	C	19026.77	.	AC=1;AF=0.500;AN=2;DB;DP=1111;set=Intersection	GT:AD:AF:DP	0/1:218,873:0.80:1091
chr16	21531609	rs42139	C	T	4060.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:264,212:0.45:476
chr16	21531681	rs42140	C	G	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:118,91:0.44:209
chr16	21608472	rs194548	G	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr16	21623944	.	CT	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.027;QD=1.60;ReadPosRankSum=0.518;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:95,46:0.33:141
chr16	21652720	rs1055740	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	21658266	rs3091404	C	T	4059.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:49,183:0.79:232
chr16	21689791	rs215894	T	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-1.016;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr16	21696074	.	ATTATTATTATTATTT	A	337.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.64;MQRankSum=1.453;QD=16.08;ReadPosRankSum=1.105;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr16	21696080	rs68184103	ATTATTATTT	A	236.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.71;MQRankSum=-1.067;QD=11.27;ReadPosRankSum=-1.295;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr16	21730449	rs215901	C	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:40,123:0.75:163
chr16	21732553	.	TACAC	T	1055.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=40.61;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	21739430	rs4408531	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.099;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr16	21771645	.	A	G	196	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=27;MQ=43.61;NF=12;NR=0;PP=196;QD=19.2309343789;SC=CTCTTTGGGGATCATTGTTCC;SbPval=1.0;Source=Platypus;TC=19;TCF=19;TCR=0;TR=12;WE=21771653;WS=21771642;set=Platypus	GT:AD:AF:DP	0/1:7,12:0.63:19
chr16	21781496	rs199973756	T	TA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=47.68;MQRankSum=-2.675;QD=1.27;ReadPosRankSum=0.900;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:84,22:0.21:106
chr16	21821976	rs148768203	C	CA	171	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=6.690;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-0.868;QD=10.69;ReadPosRankSum=1.097;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr16	21970546	rs2967178	T	C	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	21985486	rs11648723	G	T	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:17,81:0.83:98
chr16	21992122	rs2965803	T	C	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	22012146	rs143239876	AATG	A,AATGATG	1797.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=112;set=Intersection	GT:AF:DP	1/2:0.18,0.68:79
chr16	22114691	.	T	TA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.062;QD=0.72;ReadPosRankSum=-2.879;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:124,28:0.18:152
chr16	22128052	rs11649656	TT	GC	19236.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr16	22144318	rs1105929	C	T	2361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=1165;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.241;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:933,225:0.19:1158
chr16	22144358	.	C	A	2645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DP=1152;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.122;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:901,233:0.21:1134
chr16	22144578	rs1105928	A	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.787;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=1.445;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr16	22149612	rs112136401	C	CTG	429.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr16	22149623	.	T	C	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.969;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=-1.465;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:27,64:0.70:91
chr16	22152450	rs11862108	A	G	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.372;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:156,56:0.26:212
chr16	22155629	rs9937453	A	G	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-1.934;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:265,93:0.26:358
chr16	22157582	rs61744122	C	A	1489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-1.793;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:397,119:0.23:516
chr16	22161136	rs1991020	T	C	7055.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr16	22162179	rs17711789	G	C	5185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=1.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=0.110;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:68,239:0.78:307
chr16	22178256	rs6497575	G	A	1555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.645;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:397,123:0.24:520
chr16	22237118	rs9935059	A	G	1255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-0.308;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:386,109:0.22:495
chr16	22237273	rs17841292	C	G	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=2.418;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:250,56:0.18:306
chr16	22256193	rs4783451	T	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.097;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.843;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:129,34:0.21:163
chr16	22261900	rs2303187	G	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=1.360;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:230,61:0.21:291
chr16	22262514	rs2303186	C	A	1960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.160;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:474,150:0.24:624
chr16	22269867	rs4783453	A	G	11637.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,458:1.00:458
chr16	22276165	rs368773676	C	T	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-2.150;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:173,38:0.18:211
chr16	22310315	rs13333149	G	A	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-1.636;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:535,121:0.18:656
chr16	22320625	.	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=3.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.507;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:109,18:0.14:127
chr16	22325066	rs151204707	A	G	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=1.176;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:213,54:0.20:267
chr16	22328094	rs2290830	G	T	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:47,130:0.73:177
chr16	22334035	rs8055191	A	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.195;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:75,21:0.22:96
chr16	22334084	rs8055349	A	G	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.727;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:201,56:0.22:257
chr16	22334337	rs112922359	G	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.270;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-0.801;SOR=1.530;set=HC	GT:AD:AF:DP	0/1:79,21:0.21:100
chr16	22339756	rs112693034	C	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=1.360;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:159,36:0.18:195
chr16	22579565	rs370421878	AATTC	A	102.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.80;MQRankSum=1.282;QD=20.56;ReadPosRankSum=-0.000;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	23079353	rs8047644	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,37:0.93:40
chr16	23079501	rs35254998	G	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.602;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:269,59:0.18:328
chr16	23085441	rs13338545	T	C	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr16	23098422	rs13339649	A	G	6280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=-0.103;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:101,285:0.74:386
chr16	23099227	rs3812995	C	T	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:16,81:0.84:97
chr16	23117706	rs17740615	C	T	9726.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:163,456:0.74:619
chr16	23197545	rs5731	C	G	14972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.20;ReadPosRankSum=-1.397;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:99,366:0.79:465
chr16	23197562	rs5732	A	G	19547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.99;ReadPosRankSum=0.648;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:165,587:0.78:752
chr16	23200761	rs5734	T	C	4232.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:68,197:0.74:265
chr16	23200848	rs5735	T	C	8885.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:133,405:0.75:538
chr16	23201098	rs6497657	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr16	23221183	rs5740	A	G	23924.77	.	AC=2;AF=1.00;AN=2;DB;DP=935;set=Intersection	GT:AD:AF:DP	1/1:0,924:1.00:924
chr16	23221238	rs4281710	A	G	11671.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr16	23224573	.	C	CT	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-2.037;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:54,46:0.46:100
chr16	23360199	rs238547	T	C	20214.77	.	AC=2;AF=1.00;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	1/1:0,798:1.00:798
chr16	23364081	rs63982	A	C	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.593;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:254,62:0.20:316
chr16	23379279	rs250563	C	T	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.004;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:275,80:0.23:355
chr16	23388415	rs250570	G	C	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.652;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:167,59:0.26:226
chr16	23400194	rs250587	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:125,44:0.26:169
chr16	23400494	rs250586	C	A	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	23456578	rs540719	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-1.351;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr16	23457290	.	TAA	T	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=3.670;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=-1.126;QD=3.24;ReadPosRankSum=0.857;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:84,30:0.26:114
chr16	23486197	rs11074559	A	G	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.80;ReadPosRankSum=0.101;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:13,65:0.83:78
chr16	23486510	.	CTT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-2.224;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr16	23489711	rs1135045	C	G	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr16	23490353	rs4968008	T	G	10430.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:162,488:0.75:650
chr16	23498305	.	G	GTTTT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.615;QD=10.36;ReadPosRankSum=0.695;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr16	23506940	rs722069	G	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr16	23521643	rs1071685	G	C	5822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-1.635;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:81,273:0.77:354
chr16	23521750	rs2285522	T	C	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:29,85:0.75:114
chr16	23521780	rs2285521	C	T	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr16	23532990	rs1060170	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr16	23533008	rs11074565	G	A	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,60:0.76:79
chr16	23535680	rs1468138	A	C	4973.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:71,228:0.76:299
chr16	23535967	.	CT	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.067;QD=2.49;ReadPosRankSum=-1.547;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr16	23536366	rs6497670	T	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:13,49:0.79:62
chr16	23536684	rs6497671	T	C	5466.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:61,245:0.80:306
chr16	23540798	rs2072062	C	T	8481.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:134,387:0.74:521
chr16	23541223	rs2072061	G	A	3878.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:56,160:0.74:216
chr16	23546561	rs2073951	G	C	7225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-0.035;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:133,339:0.72:472
chr16	23555726	rs2369009	C	T	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:19,79:0.81:98
chr16	23557718	rs7196534	T	C	3677.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:54,169:0.76:223
chr16	23557790	rs4968019	T	C	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:25,89:0.78:114
chr16	23563501	rs7187920	C	T	5547.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:77,246:0.76:323
chr16	23573687	.	G	GT	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.713;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr16	23573705	.	CAG	C	166	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=2;HapScore=1;MGOF=14;MMLQ=26;MQ=58.88;NF=1;NR=16;PP=166;QD=11.8235294118;SC=TTTTTTGAGACAGAGTCTTGC;SbPval=0.68;Source=Platypus;TC=30;TCF=2;TCR=28;TR=17;WE=23573714;WS=23573695;set=Platypus	GT:AD:AF:DP	0/1:13,17:0.57:30
chr16	23573833	rs152460	A	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.000;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr16	23581678	rs152457	A	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.193;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr16	23606895	rs240744	G	T	10919.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr16	23607079	rs3760109	G	T	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr16	23615042	rs35294437	TA	T	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.031;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.371;QD=0.82;ReadPosRankSum=0.574;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr16	23625463	rs249936	A	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	23640467	rs249954	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.312;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:73,25:0.26:98
chr16	23654509	rs703769	T	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.575;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:19,3:0.14:22
chr16	23677006	rs35586	A	G	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.946;QD=2.35;ReadPosRankSum=0.580;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:111,32:0.22:143
chr16	23677111	rs35585	G	A	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.149;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:108,24:0.18:132
chr16	23692405	rs40076	A	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.906;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr16	23701538	rs27770	A	G	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.383;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:219,58:0.21:277
chr16	23711925	rs26764	C	G	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.160;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:325,114:0.26:439
chr16	23712183	rs26763	A	G	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.556;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:63,21:0.25:84
chr16	23712448	rs26762	G	T	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.231;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:165,45:0.21:210
chr16	23717833	rs36047689	G	A	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr16	23721601	rs4967959	T	G	6751.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	23722042	rs3899652	T	C	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	23724753	rs3809682	G	A	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr16	23768700	rs117059722	A	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr16	23768802	rs80950	T	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:77,24:0.24:101
chr16	23847575	rs75964872	C	A	12327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=775;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.11;ReadPosRankSum=1.791;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:199,566:0.74:765
chr16	23848762	rs3729883	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=4.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.280;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:94,28:0.23:122
chr16	24043676	rs1971276	C	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.306;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=7.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=1.895;SOR=2.562;set=HC	GT:AD:AF:DP	0/1:51,7:0.12:58
chr16	24135112	rs1013316	T	C	1107.79	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:7,49:0.88:56
chr16	24185815	rs72154122	CT	C	722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=9.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=3.906;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:162,101:0.38:263
chr16	24357983	rs9929254	G	A	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=1.955;QD=3.22;ReadPosRankSum=-0.232;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:65,12:0.16:77
chr16	24357998	rs5816249	T	TG	3412.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	24358006	rs111726266	A	G	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.257;QD=2.98;ReadPosRankSum=-1.954;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:92,19:0.17:111
chr16	24358186	rs9940070	T	C	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.018;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:334,74:0.18:408
chr16	24358218	rs9929298	C	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-1.333;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:258,55:0.18:313
chr16	24358244	rs9929236	A	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.365;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:187,32:0.15:219
chr16	24564879	rs72133882	GTA	G	547.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=-1.225;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:35,22:0.39:57
chr16	24567320	rs7202501	A	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-1.621;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr16	24570844	rs45591839	G	A	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.063;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:137,35:0.20:172
chr16	24572884	rs34473709	CTT	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.681;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr16	24574691	rs66509757	CT	C	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=3.714;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.414;QD=2.72;ReadPosRankSum=-0.500;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:82,52:0.39:134
chr16	24578458	rs7195386	T	C	1859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=2.964;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.572;QD=3.74;ReadPosRankSum=0.147;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:373,124:0.25:497
chr16	24579397	rs7201851	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.277;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr16	24583406	rs7593	A	G	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-1.311;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:500,117:0.19:617
chr16	24675399	rs56765650	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.110;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr16	24741005	.	TCGG	T	4027.73	.	AC=1;AF=0.500;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	0/1:26,104:0.80:130
chr16	24741008	.	G	GCGGCGGCGGCGGTGT	1071	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=1;MGOF=36;MMLQ=22;MQ=58.27;NF=13;NR=29;PP=1071;QD=25.6428571429;SC=GGCGGTGTCGGCGGCGGCGGC;SbPval=0.64;Source=Platypus;TC=61;TCF=20;TCR=41;TR=42;WE=24741028;WS=24740979;set=Platypus	GT:AD:AF:DP	0/1:19,42:0.69:61
chr16	24741686	rs7202252	T	C	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr16	24801979	rs13336754	C	T	10133.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr16	24807165	rs1030211	G	A	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	24820823	rs56154395	CA	C	620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.656;QD=8.62;ReadPosRankSum=0.438;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,56:0.78:72
chr16	24838988	rs12933971	C	T	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr16	24881192	rs2667751	C	A	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:42,115:0.73:157
chr16	24883316	rs2667745	T	G	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.78;ReadPosRankSum=0.701;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr16	24883338	rs2667746	C	T	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr16	24888646	rs11074656	T	C	11229.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr16	24895361	rs72770465	C	T	17345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=1041;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=0.596;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:232,800:0.78:1032
chr16	24902194	rs274081	T	C	10560.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr16	24918048	rs17772929	C	T	3692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=1457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=1.047;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:1129,311:0.22:1440
chr16	24919245	rs113206122	C	CAGGGA	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-0.553;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:120,14:0.10:134
chr16	24921854	rs201159355	A	ATT	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.170;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:153,59:0.28:212
chr16	24923012	rs112544021	CT	C	114.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.56;ReadPosRankSum=-1.345;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,10:0.83:12
chr16	24975425	rs12599343	G	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr16	24980189	rs12103073	G	A	6771.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:116,311:0.73:427
chr16	25043277	rs11074669	G	A	26918.77	.	AC=2;AF=1.00;AN=2;DB;DP=1042;set=Intersection	GT:AD:AF:DP	1/1:1,1028:1.00:1029
chr16	25066321	rs67051289	A	AG	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.77;QD=30.30;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	25137289	rs7189229	G	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.99;QD=30.05;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	25137385	rs11861481	G	A	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-0.072;QD=6.15;ReadPosRankSum=-2.457;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:190,108:0.36:298
chr16	25137449	rs7188975	A	T	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:192,189:0.50:381
chr16	25163017	rs139504024	G	GGTGTGT	2120.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;QD=32.63;SOR=4.112;set=HC	GT:AD:AF:DP	1/1:4,61:0.94:65
chr16	25172307	rs111379361	A	AT	375.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.032;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.207;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=0.409;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:4,24:0.86:28
chr16	25180610	rs6497812	G	A	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	25239805	rs2287798	G	C	3978.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:60,185:0.76:245
chr16	25239872	rs2287797	G	C	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:37,108:0.74:145
chr16	25255080	rs141745999	T	TAAAACTCCTTGGTTTTGCACC	5573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=6.211;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.753;QD=34.62;ReadPosRankSum=2.199;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:57,104:0.65:161
chr16	25255506	rs11642611	C	T	7320.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:77,335:0.81:412
chr16	25258035	rs11649280	A	G	9073.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:132,418:0.76:550
chr16	25263278	rs2112811	G	A	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:62,137:0.69:199
chr16	25264440	rs11643089	T	C	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=0.711;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:12,46:0.79:58
chr16	25268368	rs4787310	A	G	12449.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:224,583:0.72:807
chr16	25703700	.	TGCC	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=3.221;QD=0.50;ReadPosRankSum=-1.667;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:81,8:0.09:89
chr16	25704145	rs2943336	A	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	27215267	rs877585	G	A	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	27215380	rs908382	A	C	10076.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:1,401:1.00:402
chr16	27226437	rs8054431	G	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.422;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:272,62:0.19:334
chr16	27227122	rs7405158	T	C	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=1.063;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:129,33:0.20:162
chr16	27227168	rs11645703	T	G	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.382;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:263,70:0.21:333
chr16	27236403	rs2958	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr16	27238034	rs34940876	C	T	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.158;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:259,75:0.22:334
chr16	27238110	rs1127228	C	T	1963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=793;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=3.076;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:606,170:0.22:776
chr16	27244548	rs28456036	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.247;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr16	27245712	rs34939984	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.707;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:122,33:0.21:155
chr16	27253059	rs28363677	G	A	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	27269023	rs7201652	T	C	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.829;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:98,32:0.25:130
chr16	27356125	.	G	A	3415.77	.	AC=2;AF=1.00;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	1/1:13,138:0.91:151
chr16	27356203	rs1805010	A	G	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.500;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.455;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:467,86:0.16:553
chr16	27356359	rs2074572	C	T	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.466;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.107;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:250,50:0.17:300
chr16	27356398	rs2072130	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.231;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:167,38:0.19:205
chr16	27356667	rs3024560	T	G	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.030;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:218,63:0.22:281
chr16	27364158	rs3024610	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr16	27367334	rs4787423	C	T	6435.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	27367405	rs36125482	CT	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-0.548;QD=7.86;ReadPosRankSum=-1.010;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr16	27367413	rs3116572	T	C	55.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.146;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.669;QD=1.51;ReadPosRankSum=0.395;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr16	27367414	rs145435809	T	C	299.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-0.548;QD=8.10;ReadPosRankSum=-0.361;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:10,27:0.73:37
chr16	27370932	rs138640688	AGTG	A	482.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=40.23;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	27371158	rs3024660	C	T	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	27414339	rs12934152	T	C	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:49,159:0.76:208
chr16	27414378	rs6498021	T	G	9724.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr16	27441283	rs179760	A	G	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-1.088;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:343,72:0.17:415
chr16	27456613	rs963154	G	C	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:124,44:0.26:168
chr16	27457518	rs3093377	C	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=2.053;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:71,22:0.24:93
chr16	27510117	rs11452553	C	CA	8126.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	27561584	rs4787969	G	A	9596.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr16	27629661	rs4787980	G	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	27642249	rs233453	A	G	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	27666204	rs233470	A	G	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	27752314	rs5816442	T	TC	139.87	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	27772901	rs4787984	G	A	17368.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,678:1.00:678
chr16	27777831	rs8043555	A	G	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.026;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:294,91:0.24:385
chr16	27784497	rs117316062	G	A	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=1.575;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:134,25:0.16:159
chr16	27802805	rs1644600	C	T	9400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-2.296;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:140,437:0.76:577
chr16	27819065	rs1645358	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.151;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr16	27861762	rs9923711	C	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.507;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:64,20:0.24:84
chr16	27861779	rs9923632	A	C	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-1.795;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:64,23:0.26:87
chr16	27861785	rs9923715	C	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.647;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr16	27896017	rs35025078	C	G	6395.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:94,286:0.75:380
chr16	27974418	rs2051742	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:50,14:0.22:64
chr16	27974487	rs2051743	T	C	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.537;QD=2.64;ReadPosRankSum=-0.615;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:142,43:0.23:185
chr16	28074322	rs71377621	C	T	6765.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:86,295:0.77:381
chr16	28143489	rs9930464	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	28157351	rs28379290	T	C	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	28167914	rs10445001	C	A	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	28181306	rs28479048	A	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	28506872	rs149271	A	G	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.897;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:214,53:0.20:267
chr16	28507397	rs148114931	TGGGACAGCCTCAGGAGGGGAGGAGGCC	T	726.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:68,25:0.27:93
chr16	28507644	rs180743	C	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.065;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:238,50:0.17:288
chr16	28508048	rs180744	A	G	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.656;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:407,88:0.18:495
chr16	28508069	rs151174	C	T	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-2.044;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:389,81:0.17:470
chr16	28508447	rs40831	A	G	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.195;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:283,54:0.16:337
chr16	28508716	rs40832	T	C	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr16	28509509	rs61738759	G	A	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-1.424;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:463,149:0.24:612
chr16	28510393	rs40834	C	T	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.346;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:161,37:0.19:198
chr16	28513403	rs181206	A	G	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.451;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:304,102:0.25:406
chr16	28513530	rs181207	C	T	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=1.088;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:181,62:0.26:243
chr16	28600091	rs62034359	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.858;QD=3.54;ReadPosRankSum=-1.777;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr16	28600201	rs112479807	G	GT	224.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr16	28603393	rs27742	T	C	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.28;QD=29.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	28603655	rs1059491	T	G	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=2.93;ReadPosRankSum=1.102;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:365,109:0.23:474
chr16	28604686	rs3743963	A	G	2922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.071;QD=3.66;ReadPosRankSum=-1.757;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:588,210:0.26:798
chr16	28606931	.	G	C	7419.77	.	AC=1;AF=0.500;AN=2;DP=462;set=Intersection	GT:AD:AF:DP	0/1:102,343:0.77:445
chr16	28607070	rs4149406	A	G	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.051;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-1.329;QD=1.87;ReadPosRankSum=-2.524;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:171,43:0.20:214
chr16	28617485	rs1801030	C	T	8908.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,340:1.00:341
chr16	28617514	rs9282861	C	T	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.18;MQRankSum=-6.750;QD=0.78;ReadPosRankSum=-2.869;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:359,62:0.15:421
chr16	28617552	rs3176926	C	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-6.409;QD=0.65;ReadPosRankSum=2.645;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:348,60:0.15:408
chr16	28617574	rs4149394	C	T	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.483;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-9.619;QD=1.77;ReadPosRankSum=3.082;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:307,70:0.19:377
chr16	28617595	rs4149393	A	G	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-10.696;QD=2.80;ReadPosRankSum=2.686;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:243,70:0.22:313
chr16	28618065	rs3020806	A	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.828;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-4.590;QD=8.19;ReadPosRankSum=-0.709;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr16	28618068	rs74752114	G	A	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-4.374;QD=8.25;ReadPosRankSum=-1.243;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr16	28618071	rs3020805	C	G	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.724;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.692;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-4.333;QD=7.90;ReadPosRankSum=-1.089;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr16	28618237	rs9282862	T	C	3247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=1171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.597;QD=2.81;ReadPosRankSum=1.094;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:890,267:0.23:1157
chr16	28618238	rs7499134	A	G	34929.77	.	AC=2;AF=1.00;AN=2;DB;DP=1178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=30.01;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,1164:1.00:1164
chr16	28618446	rs2925623	T	C	1191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.162;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-11.052;QD=3.02;ReadPosRankSum=-0.272;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:303,91:0.23:394
chr16	28618545	rs2925624	G	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-12.168;QD=1.42;ReadPosRankSum=0.668;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:257,53:0.17:310
chr16	28618708	rs11648192	C	T	1237.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.312;QD=20.63;ReadPosRankSum=-0.059;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:7,53:0.88:60
chr16	28619911	rs1126447	T	C	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.316;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-9.574;QD=6.94;ReadPosRankSum=1.410;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:227,68:0.23:295
chr16	28619920	rs1126446	A	G	2077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-9.731;QD=7.12;ReadPosRankSum=0.340;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:222,70:0.24:292
chr16	28620800	rs3760091	C	G	8610.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:122,397:0.76:519
chr16	28621311	rs2077412	T	C	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.773;QD=2.66;ReadPosRankSum=0.278;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:205,60:0.23:265
chr16	28631314	rs141320733	T	TTGTGTG	1107.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:5,30:0.86:35
chr16	28631360	rs28410083	A	T	1075.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.423;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=-0.072;SOR=0.671;set=HC	GT:AD:AF:DP	1/1:5,51:0.91:56
chr16	28835680	rs149808056	T	TG	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.389;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr16	28837203	rs62036622	T	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.719;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:73,12:0.14:85
chr16	28837515	rs8049439	T	C	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:97,26:0.21:123
chr16	28838073	rs12448482	A	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:55,17:0.24:72
chr16	28842257	.	C	CA	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.101;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=1.389;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:89,48:0.35:137
chr16	28842311	rs4344749	A	G	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	28844068	rs7498491	T	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.919;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:86,34:0.28:120
chr16	28844284	rs62036626	A	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.686;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:68,29:0.30:97
chr16	28844365	rs62036657	G	A	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.565;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:222,73:0.25:295
chr16	28846840	rs56404918	T	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.673;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=7.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-2.234;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:96,17:0.15:113
chr16	28846866	rs55719896	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.244;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:110,18:0.14:128
chr16	28847149	rs55830740	G	C	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.088;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:495,131:0.21:626
chr16	28847246	rs12928404	T	C	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.033;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.602;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:285,93:0.25:378
chr16	28855522	rs61737565	G	C	3039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=1019;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.697;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:766,229:0.23:995
chr16	28855727	rs4788099	A	G	2054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=819;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.172;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:639,175:0.21:814
chr16	28857645	rs7187776	A	G	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.966;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:103,37:0.26:140
chr16	28875122	rs7198606	T	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-1.264;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:156,40:0.20:196
chr16	28883241	rs7498665	A	G	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.737;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:542,139:0.20:681
chr16	28883327	rs28433345	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.999;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:93,31:0.25:124
chr16	28883841	rs62037369	C	T	2320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=1109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=1.460;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:881,219:0.20:1100
chr16	28890131	rs62037371	C	A	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.561;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:292,75:0.20:367
chr16	28893724	rs5816477	ACT	A	455.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:86,18:0.17:104
chr16	28896015	rs11642449	C	T	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.034;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:336,97:0.22:433
chr16	28898793	rs6565259	T	C	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-1.946;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:442,140:0.24:582
chr16	28903763	rs200957871	CTG	C	1372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.32;ReadPosRankSum=0.227;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:6,34:0.85:40
chr16	28903764	.	TGTAA	T	1089	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=1;NR=16;PP=1089;QD=66.5882352941;SC=TGAGAAAGGCTGTAACCTTGG;SbPval=0.58;Source=Platypus;TC=20;TCF=1;TCR=19;TR=17;WE=28903777;WS=28903754;set=Platypus	GT:AD:AF:DP	1/0:3,17:0.85:20
chr16	28903767	rs200961662	AAC	A	1372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.32;ReadPosRankSum=0.171;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:6,34:0.85:40
chr16	28903769	.	C	A	793	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=27;MQ=60.0;NF=12;NR=16;PP=793;QD=29.563257591;SC=AAGGCTGTAACCTTGGCTCCT;SbPval=0.48;Source=Platypus;TC=32;TCF=13;TCR=19;TR=28;WE=28903777;WS=28903754;set=Platypus	GT:AD:AF:DP	1/0:4,28:0.88:32
chr16	28906084	rs9931989	G	C	5555.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:90,257:0.74:347
chr16	28909703	.	C	A	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.200;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:300,109:0.27:409
chr16	28913787	rs7189927	T	C	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:28,71:0.72:99
chr16	28915433	rs2071342	A	C	5095.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:64,219:0.77:283
chr16	28915527	rs10499	G	A	18340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=1185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.178;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:317,854:0.73:1171
chr16	28922149	rs11646653	C	T	13939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.061;ClippingRankSum=0.000;DB;DP=849;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=1.031;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:203,639:0.76:842
chr16	28925978	rs3924376	T	C	13252.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:191,593:0.76:784
chr16	28944396	rs2904880	C	G	16375.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr16	28944700	rs35979293	G	T	8821.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:174,401:0.70:575
chr16	28962755	rs12449272	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=0.818;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	28993049	rs6565300	A	C	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr16	28993649	rs11301233	AC	A	15993.73	.	AC=1;AF=0.500;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	0/1:223,637:0.74:860
chr16	28995757	rs7140	C	A	8851.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:2,337:0.99:339
chr16	28997997	rs1131543	G	A	3563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=1169;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.995;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:883,278:0.24:1161
chr16	29001460	rs9929088	A	C	23831.77	.	AC=2;AF=1.00;AN=2;DB;DP=943;set=Intersection	GT:AD:AF:DP	1/1:0,923:1.00:923
chr16	29102189	rs56374327	C	CT	1927.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.99;QD=24.10;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	29113263	rs149472124	C	T	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=5.452;MLEAC=1;MLEAF=0.500;MQ=51.54;MQRankSum=-2.726;QD=3.02;ReadPosRankSum=0.272;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:134,39:0.23:173
chr16	29113497	rs11366120	AT	A	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-15.215;QD=1.41;ReadPosRankSum=-0.944;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:310,86:0.22:396
chr16	29127350	rs1540389	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr16	29142059	rs1642020	G	C	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-8.276;QD=3.59;ReadPosRankSum=1.343;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:113,42:0.27:155
chr16	29150785	rs1646119	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.544;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=1.312;QD=2.21;ReadPosRankSum=-0.248;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:120,33:0.22:153
chr16	29332380	rs257878	T	C	8671.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr16	29375985	.	C	CT	957.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=4.217;MLEAC=1;MLEAF=0.500;MQ=52.36;MQRankSum=-6.064;QD=5.70;ReadPosRankSum=-1.398;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:91,77:0.46:168
chr16	29376400	.	CTG	C	1003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.500;MQ=55.30;MQRankSum=-7.068;QD=4.33;ReadPosRankSum=1.407;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:166,66:0.28:232
chr16	29624247	rs28455095	C	A	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:17,77:0.82:94
chr16	29644794	rs11150561	A	G	4184.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:68,181:0.73:249
chr16	29645078	rs12597368	C	A	3754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-1.968;QD=18.05;ReadPosRankSum=1.104;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:43,165:0.79:208
chr16	29645104	rs35388990	CA	C	3033.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=5.471;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-1.069;QD=7.72;ReadPosRankSum=2.137;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:139,254:0.65:393
chr16	29647700	rs200123374	C	T	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=46.05;MQRankSum=-1.532;QD=17.04;ReadPosRankSum=-1.409;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:12,33:0.73:45
chr16	29705854	rs9936468	C	T	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	29705974	rs140872647	C	CT	2609.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.956;QD=4.92;ReadPosRankSum=0.915;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:394,136:0.26:530
chr16	29706379	rs113148463	C	T	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:57,169:0.75:226
chr16	29706444	rs2303255	C	T	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.131;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.618;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:212,74:0.26:286
chr16	29708350	rs9932770	A	G	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr16	29790669	rs235634	T	A	11530.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr16	29790678	rs183527	T	G	10934.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.37;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	29790767	rs235635	A	G	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	29790864	rs235636	G	A	6378.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	29791561	rs235637	T	G	12512.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.01;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr16	29791721	rs235638	G	C	12505.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr16	29791818	rs35586094	TA	T	974.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	29809634	rs5816499	TACAC	T,TAC	714.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;MQRankSum=0.220;QD=20.42;ReadPosRankSum=0.428;SOR=0.880;set=HC	GT:AD:AF:DP	1/2:2,21,12:0.60,0.34:35
chr16	29809673	rs202102958	ATTTC	A	756.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,24:0.27:90
chr16	29811319	rs235648	C	T	11822.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr16	29814234	rs2450399	G	A	11437.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:1,448:1.00:449
chr16	29817998	rs111993640	C	T	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.205;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr16	29819817	rs138758146	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr16	29821744	rs2516825	G	A	11486.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr16	29821983	.	C	CT	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=2.640;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-1.342;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:153,46:0.23:199
chr16	29822841	rs11150572	A	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	29823202	rs12923293	A	G	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	29825126	rs11150573	T	C	17189.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:1,642:1.00:643
chr16	29828710	rs8058824	C	G	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-2.595;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:206,48:0.19:254
chr16	29830829	rs11864180	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:61,15:0.20:76
chr16	29842891	rs34127220	C	T	4833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=1531;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.258;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:1153,371:0.24:1524
chr16	29848417	rs13331733	A	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chr16	29852860	rs3815824	C	T	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr16	29855731	rs9939514	G	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:98,44:0.31:142
chr16	29857316	rs4787480	G	A	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-2.316;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:299,66:0.18:365
chr16	29859430	rs11350750	CT	C	542.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.217;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.650;QD=9.69;ReadPosRankSum=-0.530;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:11,45:0.80:56
chr16	29872361	rs3815822	G	A	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	29874264	rs11540971	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.169;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:295,66:0.18:361
chr16	29888367	rs139403019	GTC	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.550;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:57,9:0.14:66
chr16	29906546	rs4787484	C	T	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-1.568;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:118,34:0.22:152
chr16	29907298	rs34549819	G	GT	827.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.567;QD=5.27;ReadPosRankSum=0.125;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:111,46:0.29:157
chr16	29908433	rs11649499	C	G	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	29910431	.	GTTT	G,GTT	1056.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.659;QD=14.09;ReadPosRankSum=-1.557;SOR=0.857;set=HC	GT:AD:AF:DP	1/2:10,37,28:0.49,0.37:75
chr16	29912802	rs140411458	G	GGGT	18178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.565;QD=31.78;ReadPosRankSum=0.922;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:137,435:0.76:572
chr16	29916950	.	GAAA	G	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.238;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr16	29918034	rs1129700	T	C	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr16	29923510	rs4548895	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	29934754	rs12596042	T	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-3.037;QD=0.47;ReadPosRankSum=-0.881;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:97,21:0.18:118
chr16	29937081	rs5816505	G	GA	1743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=5.057;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.461;QD=6.81;ReadPosRankSum=-0.732;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:192,64:0.25:256
chr16	29982961	rs9932702	C	T	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.355;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=2.609;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr16	29989739	rs11860782	A	G	6085.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:154,283:0.65:437
chr16	29993108	rs11642046	C	G	2890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=1051;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.266;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:807,233:0.22:1040
chr16	29994736	rs3814884	T	A	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.076;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=1.328;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:496,115:0.19:611
chr16	29994922	rs3814883	C	T	10682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.428;ClippingRankSum=0.000;DB;DP=3498;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.037;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:2634,812:0.24:3446
chr16	29998200	rs4077410	A	G	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	29999225	rs11864149	G	A	9593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=0.501;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:119,439:0.79:558
chr16	30000901	rs3814881	G	A	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.679;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:351,86:0.20:437
chr16	30012691	rs57312298	C	T	29971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.388;ClippingRankSum=0.000;DB;DP=1869;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=16.17;ReadPosRankSum=2.035;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:470,1383:0.75:1853
chr16	30012922	rs11866084	C	T	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:44,146:0.77:190
chr16	30016022	rs12928610	C	T	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	30017895	rs3814880	T	C	2471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=786;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.255;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:587,186:0.24:773
chr16	30018500	rs3935873	C	T	2843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=1118;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=1.263;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:861,243:0.22:1104
chr16	30018720	rs12921753	C	T	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.474;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.294;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:125,31:0.20:156
chr16	30021402	rs1140239	C	T	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.566;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:241,95:0.28:336
chr16	30037128	rs11544328	A	C	13131.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr16	30080780	rs11860935	C	T	26048.77	.	AC=1;AF=0.500;AN=2;DB;DP=1532;set=Intersection	GT:AD:AF:DP	0/1:321,1188:0.79:1509
chr16	30081257	rs200761497	C	T	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.549;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:154,44:0.22:198
chr16	30093779	rs2278557	C	G	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.539;QD=2.67;ReadPosRankSum=0.248;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:351,104:0.23:455
chr16	30094180	rs11861842	C	T	7065.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:128,316:0.71:444
chr16	30096468	rs34627357	T	TG	1358.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	30098189	rs3833842	GTGA	G	1056.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.020;QD=3.00;ReadPosRankSum=1.653;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:268,84:0.24:352
chr16	30119525	rs8061772	C	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	30194328	rs79512505	G	C	10182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=-0.357;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:138,464:0.77:602
chr16	30198151	rs1132812	A	G	5133.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:71,240:0.77:311
chr16	30198850	rs117041067	C	G	13404.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:167,603:0.78:770
chr16	30366039	rs35480350	G	A	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.652;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:285,90:0.24:375
chr16	30376486	rs8049108	T	C	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=1.822;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:537,158:0.23:695
chr16	30376959	rs11646130	T	C	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.139;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.891;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:417,125:0.23:542
chr16	30381303	rs12930787	C	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.026;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:81,24:0.23:105
chr16	30386262	rs8046445	C	T	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:47,241:0.84:288
chr16	30390314	rs12447833	T	C	5440.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:67,221:0.77:288
chr16	30393660	rs4787643	G	A	17989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=1092;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.555;QD=16.64;ReadPosRankSum=-0.018;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:253,828:0.77:1081
chr16	30393771	rs4788409	G	A	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:38,84:0.69:122
chr16	30407269	rs13333093	C	A	4497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.134;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=-1.013;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:78,206:0.73:284
chr16	30408765	rs12921440	C	T	4065.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:57,183:0.76:240
chr16	30410445	rs4788413	C	T	3870.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:61,173:0.74:234
chr16	30424888	rs11314620	GT	G	1566.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr16	30485393	rs11574938	G	C	13726.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr16	30492666	.	TAA	T	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.530;QD=14.74;ReadPosRankSum=-1.275;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr16	30493000	rs11574941	G	A	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr16	30495412	rs2285459	T	C	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	30495657	rs7197010	T	C	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	30500761	rs3087438	G	A	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:110,28:0.20:138
chr16	30505512	rs1978079	C	T	20330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=1275;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=0.798;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:323,943:0.74:1266
chr16	30505513	rs4350585	A	G	32785.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=1283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=-0.946;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:4,1270:1.00:1274
chr16	30507972	rs28708641	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr16	30510571	rs1557672	C	T	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=2.584;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:445,111:0.20:556
chr16	30515649	rs35427005	C	T	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=0.620;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:29,75:0.72:104
chr16	30537845	rs71383763	G	A	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.331;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.684;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr16	30585139	rs142051127	TTAAA	T	938.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=42.67;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	30663553	.	C	CT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.06;ReadPosRankSum=-1.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr16	30665449	rs370614424	CA	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.814;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:75,29:0.28:104
chr16	30718459	rs67871634	AGT	A	832.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:86,32:0.27:118
chr16	30724070	rs4889500	G	T	8553.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:2,342:0.99:344
chr16	30724221	rs4889501	C	T	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	30732406	rs1470129	C	G	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	30734963	rs4889502	C	A	24467.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.235;ClippingRankSum=0.000;DB;DP=977;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.97;ReadPosRankSum=-0.636;SOR=0.106;set=HC	GT:AD:AF:DP	1/1:3,939:1.00:942
chr16	30760350	.	T	C	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.816;ClippingRankSum=0.000;DP=1000;ExcessHet=3.0103;FS=65.641;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=1.216;QD=1.71;ReadPosRankSum=16.019;SOR=2.084;set=HC	GT:AD:AF:DP	0/1:395,157:0.28:552
chr16	30760364	rs368728198	G	C	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.323;ClippingRankSum=0.000;DB;DP=680;ExcessHet=3.0103;FS=40.818;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=7.321;QD=8.59;ReadPosRankSum=3.576;SOR=1.965;set=HC	GT:AD:AF:DP	0/1:76,161:0.68:237
chr16	30760367	rs370871117	G	C	13376.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=1.967;MLEAC=2;MLEAF=1.000;MQ=57.30;MQRankSum=0.305;QD=39.00;ReadPosRankSum=-0.454;SOR=1.309;set=HC	GT:AD:AF:DP	1/1:4,339:0.99:343
chr16	30760370	rs375313391	G	C	13630.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=2.538;MLEAC=2;MLEAF=1.000;MQ=57.55;MQRankSum=0.590;QD=40.57;ReadPosRankSum=-0.707;SOR=1.228;set=HC	GT:AD:AF:DP	1/1:3,333:0.99:336
chr16	30760373	rs368306015	G	C	13251.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=5.824;MLEAC=2;MLEAF=1.000;MQ=57.57;MQRankSum=0.803;QD=45.38;ReadPosRankSum=-2.858;SOR=1.492;set=HC	GT:AD:AF:DP	1/1:3,289:0.99:292
chr16	30760376	.	G	C	11768.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.88;MQRankSum=1.261;QD=100.59;ReadPosRankSum=-2.838;SOR=0.515;set=HC	GT:AD:AF:DP	1/1:3,114:0.97:117
chr16	30760382	.	G	C	3466.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.05;MQRankSum=1.172;QD=48.83;ReadPosRankSum=-2.925;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:3,68:0.96:71
chr16	30762640	rs4889504	C	T	13098.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr16	30766247	rs9941201	G	A	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr16	30768492	rs71820772	GCTCTGGC	G	3824.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	30770267	rs7188077	C	G	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr16	30772040	rs4889505	A	G	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	30773822	rs1550477	T	C	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	30779716	rs7195142	A	G	9329.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr16	30780828	rs4889506	A	G	11512.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr16	30832463	rs6565205	A	C	13963.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:1,531:1.00:532
chr16	30832475	rs6565206	T	C	14155.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.464;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=4.102;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=2.022;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:4,556:0.99:560
chr16	30832701	rs8045550	A	C	20122.77	.	AC=2;AF=1.00;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	1/1:0,755:1.00:755
chr16	30833246	rs9319587	C	T	33549.77	.	AC=2;AF=1.00;AN=2;DB;DP=1299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,1295:1.00:1295
chr16	30833272	rs8046609	A	G	41281.77	.	AC=2;AF=1.00;AN=2;DB;DP=1624;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,1617:1.00:1617
chr16	30833425	rs4889510	G	C	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	30886643	rs897984	T	C	12434.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr16	30938811	rs12930545	A	G	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	30959074	.	G	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-1.226;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:200,63:0.24:263
chr16	30964940	rs9926903	A	G	28743.77	.	AC=2;AF=1.00;AN=2;DB;DP=1132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,1103:1.00:1103
chr16	30965549	rs35717321	A	AT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.012;QD=0.84;ReadPosRankSum=-1.807;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:102,29:0.22:131
chr16	30975312	.	C	CA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.491;QD=0.35;ReadPosRankSum=1.792;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:94,20:0.18:114
chr16	30976732	.	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DP=407;set=Intersection	GT:AD:AF:DP	0/1:295,103:0.26:398
chr16	30977799	rs11150601	G	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	30980902	rs897986	T	C	8920.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr16	30999142	rs9938550	A	G	16662.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr16	30999462	rs2305880	T	C	12301.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr16	31004926	rs7194921	C	T	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	31008964	rs12928868	C	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.802;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:168,57:0.25:225
chr16	31012781	rs12920772	G	A	12773.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:2,515:1.00:517
chr16	31075175	rs2303223	G	A	10269.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr16	31075708	rs2032917	C	G	23796.77	.	AC=2;AF=1.00;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr16	31088347	rs749671	G	A	19977.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	1/1:0,747:1.00:747
chr16	31088625	rs749670	A	G	22458.77	.	AC=2;AF=1.00;AN=2;DB;DP=872;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,846:1.00:846
chr16	31097574	rs4889535	G	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	31104192	rs144197331	C	CA	801.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr16	31104509	rs8050894	C	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	31104878	rs9934438	G	A	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	31105554	rs2884737	A	C	51288.77	.	AC=2;AF=1.00;AN=2;DB;DP=2005;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,1982:1.00:1982
chr16	31121793	rs14235	G	A	10078.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr16	31122229	rs1549296	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	31141826	rs1549295	A	G	14244.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr16	31141880	rs1549294	A	G	14305.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr16	31141993	rs1549293	C	T	10210.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr16	31142381	rs2855479	A	G	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr16	31151521	rs8047469	A	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.64;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	31152697	rs150305650	T	TAAAC	2857.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:37,65:0.64:102
chr16	31152717	rs889547	T	C	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.22;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	31153105	rs1549300	A	G	19946.77	.	AC=2;AF=1.00;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	1/1:0,761:1.00:761
chr16	31153780	rs889546	G	A	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	31154146	rs1549299	G	A	13882.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr16	31191482	rs929867	A	G	20332.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,783:1.00:783
chr16	31195279	rs1052352	C	T	12935.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:1,489:1.00:490
chr16	31195759	rs370126678	CT	C	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=6.238;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.465;QD=1.97;ReadPosRankSum=0.226;SOR=0.253;set=HC	GT:AD:AF:DP	0/1:102,58:0.36:160
chr16	31202698	rs371057360	AT	A	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-1.219;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:94,44:0.32:138
chr16	31230463	rs7186832	C	T	5299.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	31271545	rs11865830	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	31273129	rs3764327	T	C	12346.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr16	31276811	rs1143679	G	A	6397.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:72,282:0.80:354
chr16	31283123	rs41488545	G	A	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:47,103:0.69:150
chr16	31283164	rs35314490	G	A	3920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=-2.253;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:77,187:0.71:264
chr16	31283323	rs35472514	C	G	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:28,93:0.77:121
chr16	31284618	rs201225943	T	TA	613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.241;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:165,71:0.30:236
chr16	31288121	rs9939679	A	C	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:18,76:0.81:94
chr16	31335906	rs41476751	T	C	12172.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:189,548:0.74:737
chr16	31336888	rs1143683	C	T	15867.77	.	AC=1;AF=0.500;AN=2;DB;DP=962;set=Intersection	GT:AD:AF:DP	0/1:224,728:0.76:952
chr16	31339403	rs41517750	G	C	3462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.81;ReadPosRankSum=0.448;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:46,160:0.78:206
chr16	31340368	rs55742763	G	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:37,7:0.16:44
chr16	31342608	rs7188189	T	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	31342788	rs111881239	C	CTTG	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.148;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:57,10:0.15:67
chr16	31343005	rs1143678	C	T	16303.77	.	AC=1;AF=0.500;AN=2;DB;DP=967;set=Intersection	GT:AD:AF:DP	0/1:219,743:0.77:962
chr16	31343181	.	C	CGTGTGTGCGA	265	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=23;MQ=60.0;NF=0;NR=3;PP=265;QD=97.3333333333;SC=TGTGTATGTGCGTGTGTGCAA;SbPval=1.0;Source=Platypus;TC=20;TCF=1;TCR=19;TR=3;WE=31343189;WS=31343171;set=Platypus	GT:AD:AF:DP	0/1:17,3:0.15:20
chr16	31368816	rs11574635	G	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr16	31368835	rs11574636	C	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr16	31371193	rs4264407	C	G	12268.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:2,451:1.00:453
chr16	31371674	rs2230428	G	A	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.142;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:163,44:0.21:207
chr16	31380596	rs12930249	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.80;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	31380610	rs34126382	AC	A	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.37;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	31392384	rs17641579	A	G	5330.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:101,249:0.71:350
chr16	31405451	.	CA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-1.453;QD=1.84;ReadPosRankSum=-0.114;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr16	31409009	rs34475127	C	CG	746.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=20.365;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.659;QD=2.38;ReadPosRankSum=-1.594;SOR=1.865;set=HC	GT:AD:AF:DP	0/1:257,57:0.18:314
chr16	31419300	.	CT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.416;QD=2.18;ReadPosRankSum=0.504;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr16	31422429	rs12444660	T	C	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	31427678	rs8056122	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	31470540	rs3813002	T	C	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	31476458	rs11150624	C	T	14296.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr16	31477776	.	C	T	13220.77	.	AC=1;AF=0.500;AN=2;DP=761;set=Intersection	GT:AD:AF:DP	0/1:150,599:0.80:749
chr16	31483622	rs11646911	C	T	51665.77	.	AC=2;AF=1.00;AN=2;DB;DP=1998;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,1981:1.00:1981
chr16	31488916	rs10596	C	G	12437.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr16	31503751	rs4536493	A	G	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	31519048	rs11861164	A	G	6361.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	31539386	rs8050390	G	A	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.97;ReadPosRankSum=0.309;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:23,79:0.77:102
chr16	31575186	rs7192364	C	T	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:30,150:0.83:180
chr16	31580272	rs4889673	C	T	5107.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:56,224:0.80:280
chr16	31580447	rs190551738	C	T	6173.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:69,277:0.80:346
chr16	31580530	rs4889548	A	C	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:61,172:0.74:233
chr16	31613625	rs34368131	GT	G	10309.73	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:79,296:0.79:375
chr16	31724836	rs2884713	T	C	3685.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:55,165:0.75:220
chr16	31734197	rs34186495	G	GA	706.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr16	31770696	rs34487972	G	GA	2829.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:46,139:0.75:185
chr16	31770723	rs12921028	T	A	3299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-0.749;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:48,154:0.76:202
chr16	31926619	rs3850114	G	A	4921.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	31987859	rs370699866	C	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.035;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=8.886;MLEAC=1;MLEAF=0.500;MQ=41.71;MQRankSum=0.453;QD=11.12;ReadPosRankSum=-1.236;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr16	31987931	rs489120	G	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=14.618;MLEAC=1;MLEAF=0.500;MQ=41.93;MQRankSum=-1.764;QD=5.69;ReadPosRankSum=0.078;SOR=3.945;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr16	32486756	rs28495417	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr16	32487933	rs28612238	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr16	32889182	.	C	T	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=53.13;MQRankSum=-0.222;QD=11.91;ReadPosRankSum=-1.280;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:41,46:0.53:87
chr16	32891522	rs138173595	G	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,50:0.54:92
chr16	32891573	rs147501614	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr16	32893876	rs375167306	T	C	5361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.761;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=48.94;MQRankSum=-9.227;QD=9.32;ReadPosRankSum=3.414;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:286,289:0.50:575
chr16	32893880	rs149083075	G	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.42;MQRankSum=-0.406;QD=0.21;ReadPosRankSum=-0.682;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:547,79:0.13:626
chr16	32896488	rs372917285	G	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.98;MQRankSum=-3.558;QD=4.51;ReadPosRankSum=-0.466;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr16	32896606	rs139370574	GC	AT	8935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.18;MQRankSum=-11.267;QD=12.01;ReadPosRankSum=3.399;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:492,252:0.34:744
chr16	32896672	.	G	C	1970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DP=327;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-9.818;QD=6.06;ReadPosRankSum=-0.900;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:214,111:0.34:325
chr16	32896688	.	G	A	2549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=-8.385;QD=12.50;ReadPosRankSum=-0.849;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:134,70:0.34:204
chr16	32896742	.	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.97;MQRankSum=-1.890;QD=8.58;ReadPosRankSum=-1.213;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr16	32936832	.	A	G	2860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=4.729;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=-4.706;QD=30.43;ReadPosRankSum=-5.280;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:24,70:0.74:94
chr16	32936837	.	G	T	3054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=3.251;MLEAC=1;MLEAF=0.500;MQ=47.95;MQRankSum=-4.476;QD=28.82;ReadPosRankSum=-4.881;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:24,82:0.77:106
chr16	32945400	.	CTAT	C	1793.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=15.717;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.139;QD=7.29;ReadPosRankSum=4.376;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:136,110:0.45:246
chr16	32945457	rs28593326	G	A	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr16	32945481	rs28463965	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr16	32956889	.	A	T	199.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,14:0.24:58
chr16	32957041	rs62046846	C	T	6445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=47.17;MQRankSum=-15.145;QD=19.01;ReadPosRankSum=0.467;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:172,167:0.49:339
chr16	32957041	.	CGT	TGC	1904	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=44.5;NF=38;NR=44;PP=1904;QD=23.8715594495;SC=TAAGTGATGCCGTGGGCTGGG;SbPval=0.48;Source=Platypus;TC=186;TCF=84;TCR=102;TR=82;WE=32957051;WS=32957031;set=Platypus	GT:AD:AF:DP	0/1:104,82:0.44:186
chr16	32957043	rs62046847	T	C	6445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=47.18;MQRankSum=-15.185;QD=19.30;ReadPosRankSum=0.170;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:168,166:0.50:334
chr16	33372666	rs4985326	C	T	4221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.409;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-16.909;QD=11.08;ReadPosRankSum=1.416;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:265,116:0.30:381
chr16	33372673	rs4985325	T	C	4628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-16.884;QD=10.69;ReadPosRankSum=1.221;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:302,131:0.30:433
chr16	33372677	rs4985324	C	T	4687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-16.603;QD=10.44;ReadPosRankSum=0.695;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:311,138:0.31:449
chr16	33372694	rs4985323	T	C	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:435,182:0.29:617
chr16	33379851	rs4566180	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.717;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:68,14:0.17:82
chr16	33380000	rs4536488	G	A	3666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=986;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-11.022;QD=3.73;ReadPosRankSum=2.905;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:727,257:0.26:984
chr16	33380074	rs28591591	A	G	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	0/1:690,227:0.25:917
chr16	33380234	rs57545706	C	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr16	33380263	rs57312786	C	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr16	33390329	rs12232434	G	C	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:180,97:0.35:277
chr16	33390399	rs4086208	C	T	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:397,175:0.31:572
chr16	33391213	rs4082382	C	T	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=-0.494;QD=12.00;ReadPosRankSum=1.320;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:104,54:0.34:158
chr16	33391222	rs4082381	G	A	1938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=53.63;MQRankSum=-0.056;QD=10.54;ReadPosRankSum=1.505;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:125,59:0.32:184
chr16	33391256	rs7193840	A	G	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:166,74:0.31:240
chr16	33391348	rs7188099	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:224,89:0.28:313
chr16	33391395	rs7188064	G	A	1913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-1.876;QD=4.13;ReadPosRankSum=0.813;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:334,129:0.28:463
chr16	33391415	rs357994	A	C	9879.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:173,346:0.67:519
chr16	33392008	rs56739713	A	G	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.631;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=5.413;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=1.953;QD=2.59;ReadPosRankSum=-1.591;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:388,109:0.22:497
chr16	33392165	rs11150710	C	G	5276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.096;ClippingRankSum=0.000;DB;DP=841;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-0.999;QD=6.27;ReadPosRankSum=2.187;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:541,300:0.36:841
chr16	33392215	rs11150709	G	A	2415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=3.248;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-3.014;QD=7.95;ReadPosRankSum=-0.838;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:182,122:0.40:304
chr16	33392231	rs11150708	C	T	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:144,92:0.39:236
chr16	33395795	rs373875949	TA	T	1003.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.938;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-0.031;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:52,29:0.36:81
chr16	33395797	.	A	AAATAATAATAATAAT	222.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.475;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:64,11:0.15:75
chr16	33395802	rs368088965	AT	A	1188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=6.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-0.591;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chr16	33395820	rs113700056	A	ACAG	1661.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=0.421;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:73,45:0.38:118
chr16	33395882	rs4887691	A	G	4100.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:398,231:0.37:629
chr16	33395983	rs28650990	T	C	3141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-10.854;QD=5.32;ReadPosRankSum=2.514;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:398,193:0.33:591
chr16	33408626	rs8059234	T	C	4419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=1235;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-14.233;QD=3.62;ReadPosRankSum=2.420;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:904,318:0.26:1222
chr16	33408654	rs60406485	C	A	7160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DB;DP=1156;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-11.391;QD=6.22;ReadPosRankSum=0.448;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:891,260:0.23:1151
chr16	33408673	rs28415216	G	A	6737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DB;DP=1109;ExcessHet=3.0103;FS=2.228;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-10.517;QD=6.10;ReadPosRankSum=-1.333;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:871,233:0.21:1104
chr16	33408733	rs8058447	GC	AT	2791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.752;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=2.301;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-5.743;QD=5.76;ReadPosRankSum=-0.083;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:389,96:0.20:485
chr16	33408793	rs58465568	G	A	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-5.003;QD=4.22;ReadPosRankSum=1.434;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:153,54:0.26:207
chr16	33410561	rs2632816	T	C	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr16	33410688	rs56055507	C	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.630;ClippingRankSum=0.000;DB;DP=923;ExcessHet=3.0103;FS=13.266;MLEAC=1;MLEAF=0.500;MQ=54.24;MQRankSum=-3.570;QD=0.24;ReadPosRankSum=-3.520;SOR=1.929;set=HC	GT:AD:AF:DP	0/1:807,109:0.12:916
chr16	33424634	rs60026982	T	C	4586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.612;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.593;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-2.989;QD=28.85;ReadPosRankSum=-0.016;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:47,112:0.70:159
chr16	33424637	rs62033013	AA	GG	4831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.040;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.480;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-2.892;QD=28.59;ReadPosRankSum=0.149;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:50,119:0.70:169
chr16	33424691	rs2632824	T	C	5972.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:134,257:0.66:391
chr16	33424787	rs2632823	C	T	15704.77	.	AC=1;AF=0.500;AN=2;DB;DP=1187;set=Intersection	GT:AD:AF:DP	0/1:418,749:0.64:1167
chr16	33424917	rs1906318	A	C	15667.77	.	AC=1;AF=0.500;AN=2;DB;DP=1222;set=Intersection	GT:AD:AF:DP	0/1:476,738:0.61:1214
chr16	33424950	rs2927971	C	T	14170.77	.	AC=1;AF=0.500;AN=2;DB;DP=1114;set=Intersection	GT:AD:AF:DP	0/1:445,664:0.60:1109
chr16	33500743	rs3888934	T	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:60,18:0.23:78
chr16	33500893	rs4079166	C	T	5406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.108;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-21.876;QD=4.99;ReadPosRankSum=2.049;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:888,195:0.18:1083
chr16	33500900	rs4079165	C	T	5937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-21.150;QD=5.40;ReadPosRankSum=4.033;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:901,198:0.18:1099
chr16	33500908	rs3888935	C	A	6057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.000;DB;DP=1118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-19.881;QD=5.43;ReadPosRankSum=5.212;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:906,210:0.19:1116
chr16	33500915	rs4079164	T	A	6341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=1076;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-17.760;QD=5.90;ReadPosRankSum=4.499;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:853,221:0.21:1074
chr16	33500973	rs58427145	CAG	C	5110.73	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:427,185:0.30:612
chr16	33530607	rs79470439	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.70;MQRankSum=-1.645;QD=18.35;ReadPosRankSum=0.674;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr16	33530615	rs141353651	ACCTT	A	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=53.52;MQRankSum=-2.189;QD=10.96;ReadPosRankSum=1.368;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	33530621	rs373785170	G	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=53.52;MQRankSum=-2.189;QD=11.82;ReadPosRankSum=1.368;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	33530626	rs377553032	T	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=-2.369;QD=10.35;ReadPosRankSum=0.992;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr16	33530639	rs75805537	A	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=7.368;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-2.638;QD=7.68;ReadPosRankSum=0.319;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr16	33530641	rs78357706	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=7.368;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-2.638;QD=7.68;ReadPosRankSum=0.232;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr16	33530740	rs200449516	TA	T	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=1.113;QD=5.89;ReadPosRankSum=-0.301;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr16	33534128	rs4247491	G	C	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:222,80:0.26:302
chr16	33534161	rs4247492	T	C	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:364,73:0.17:437
chr16	33534194	rs112954068	C	CA	1764.73	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:442,75:0.15:517
chr16	33534198	rs146867572	C	A	1923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.891;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=9.900;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-22.099;QD=3.62;ReadPosRankSum=-2.939;SOR=1.573;set=HC	GT:AD:AF:DP	0/1:453,78:0.15:531
chr16	33534205	rs75274563	T	C	2488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.423;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=8.957;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-22.094;QD=4.53;ReadPosRankSum=-3.528;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:460,90:0.16:550
chr16	33534209	rs111304289	T	A	2627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.846;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=5.989;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-22.130;QD=4.80;ReadPosRankSum=-3.162;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:456,92:0.17:548
chr16	33534212	rs74015084	C	T	2579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.029;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=5.778;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-21.987;QD=4.67;ReadPosRankSum=-3.503;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:455,98:0.18:553
chr16	33534278	rs10445205	A	G	4861.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:114,196:0.63:310
chr16	33534325	rs375310866	CT	C	565.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:122,27:0.18:149
chr16	33534330	rs28594967	G	A	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:54,97:0.64:151
chr16	33534344	rs78083012	G	T	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-10.173;QD=6.54;ReadPosRankSum=1.819;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:96,27:0.22:123
chr16	33534346	rs375719784	G	T	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-10.108;QD=4.91;ReadPosRankSum=1.923;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:98,27:0.22:125
chr16	33534352	rs78884180	G	C	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-9.714;QD=7.30;ReadPosRankSum=1.000;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:90,28:0.24:118
chr16	33534354	rs74594913	C	T	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-9.305;QD=7.97;ReadPosRankSum=1.162;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:84,26:0.24:110
chr16	33534369	rs74800708	C	CAA	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,29:0.30:97
chr16	33539512	rs78972024	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:106,28:0.21:134
chr16	33539535	rs55950724	T	C	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.737;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=50.25;MQRankSum=-8.781;QD=6.24;ReadPosRankSum=-0.385;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:152,80:0.34:232
chr16	33539541	rs80334711	A	C	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.328;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=8.357;MLEAC=1;MLEAF=0.500;MQ=50.38;MQRankSum=-4.942;QD=2.51;ReadPosRankSum=1.299;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:206,50:0.20:256
chr16	33539648	rs56161129	C	A	3471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.595;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-5.700;QD=7.16;ReadPosRankSum=3.189;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:296,189:0.39:485
chr16	33539747	rs56272308	G	T	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.226;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-0.744;QD=14.99;ReadPosRankSum=0.228;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:33,56:0.63:89
chr16	33629620	rs2005870	C	T	3559.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:169,95:0.36:264
chr16	33629637	rs2005869	T	G	5281.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:287,187:0.39:474
chr16	33629700	rs2019670	G	A	8553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=1188;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-1.941;QD=7.25;ReadPosRankSum=0.881;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:709,471:0.40:1180
chr16	33629846	rs28494899	T	A	12234.77	.	AC=1;AF=0.500;AN=2;DB;DP=1678;set=Intersection	GT:AD:AF:DP	0/1:1014,650:0.39:1664
chr16	33629950	rs4077614	G	T	11059.77	.	AC=1;AF=0.500;AN=2;DB;DP=1860;set=Intersection	GT:AD:AF:DP	0/1:1231,617:0.33:1848
chr16	33629973	rs2002923	G	A	11892.77	.	AC=1;AF=0.500;AN=2;DB;DP=1842;set=Intersection	GT:AD:AF:DP	0/1:1195,642:0.35:1837
chr16	33630022	rs2075113	A	T	11811.77	.	AC=1;AF=0.500;AN=2;DB;DP=1666;set=Intersection	GT:AD:AF:DP	0/1:1020,634:0.38:1654
chr16	33630336	rs492688	A	G	4553.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:170,217:0.56:387
chr16	33630533	rs2110374	A	C	7800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.386;QD=10.09;ReadPosRankSum=-0.577;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:379,394:0.51:773
chr16	33647367	rs199922749	T	C	3713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=887;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.44;MQRankSum=-3.629;QD=4.22;ReadPosRankSum=-0.664;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:632,247:0.28:879
chr16	33782856	rs143993159	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.53;MQRankSum=0.366;QD=10.47;ReadPosRankSum=-0.272;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr16	33784423	rs190376515	T	C	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.467;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=6.030;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-16.031;QD=1.38;ReadPosRankSum=-6.901;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:605,125:0.17:730
chr16	33784613	.	G	GC	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.235;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=6.765;MLEAC=1;MLEAF=0.500;MQ=51.36;MQRankSum=-2.973;QD=3.88;ReadPosRankSum=-0.588;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:109,23:0.17:132
chr16	33961317	rs75989665	G	A	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=9.147;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-5.106;QD=3.01;ReadPosRankSum=1.434;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:112,18:0.14:130
chr16	33961327	rs79375500	G	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=8.152;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-6.180;QD=4.78;ReadPosRankSum=0.370;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:100,22:0.18:122
chr16	33961352	.	G	A	435.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=6.404;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-7.713;QD=3.03;ReadPosRankSum=1.879;SOR=1.378;set=HC	GT:AD:AF:DP	0/1:123,21:0.15:144
chr16	33961370	rs72797450	A	C	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=6.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-7.897;QD=6.09;ReadPosRankSum=2.350;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:124,35:0.22:159
chr16	33961386	rs76705741	G	A	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-9.613;QD=3.44;ReadPosRankSum=0.656;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:156,26:0.14:182
chr16	33961390	.	GACCCGCTCCGCTGCGAGCCGGCTCTCC	G	373.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-9.766;QD=1.48;ReadPosRankSum=-0.156;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:226,26:0.10:252
chr16	33961400	rs113037697	G	T	240.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.780;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=6.124;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-1.756;QD=1.17;ReadPosRankSum=-0.737;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:184,21:0.10:205
chr16	33961418	rs113700972	A	G	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-4.956;QD=1.26;ReadPosRankSum=-1.901;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:210,30:0.12:240
chr16	33961453	rs74808338	A	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=3.167;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-16.096;QD=2.10;ReadPosRankSum=-3.161;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:281,37:0.12:318
chr16	33961465	rs74932417	G	A	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.554;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=10.095;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-14.641;QD=2.18;ReadPosRankSum=-4.049;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:327,43:0.12:370
chr16	33961467	rs74834425	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-8.087;QD=0.08;ReadPosRankSum=4.219;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:343,26:0.07:369
chr16	33961474	rs78784184	G	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-9.536;QD=0.10;ReadPosRankSum=2.736;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:353,29:0.08:382
chr16	33961481	rs366164	ATG	CCT	2022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.707;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=4.661;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-18.666;QD=4.82;ReadPosRankSum=0.231;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:347,73:0.17:420
chr16	33961499	rs75192280	CA	TG	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=2.365;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-21.056;QD=5.96;ReadPosRankSum=-0.925;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:398,96:0.19:494
chr16	33961520	rs75815313	C	T	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-16.420;QD=1.97;ReadPosRankSum=3.898;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:572,74:0.11:646
chr16	33961529	rs77202604	G	A	1253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-17.249;QD=1.69;ReadPosRankSum=5.544;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:665,79:0.11:744
chr16	33961539	rs72797452	A	C	3836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.090;ClippingRankSum=0.000;DB;DP=857;ExcessHet=3.0103;FS=2.575;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-27.747;QD=4.51;ReadPosRankSum=3.686;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:712,138:0.16:850
chr16	33961541	rs79025441	T	G	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.841;ClippingRankSum=0.000;DB;DP=868;ExcessHet=3.0103;FS=6.114;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-19.555;QD=0.42;ReadPosRankSum=-3.062;SOR=1.762;set=HC	GT:AD:AF:DP	0/1:798,63:0.07:861
chr16	33961544	rs79909802	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.566;ClippingRankSum=0.000;DB;DP=893;ExcessHet=3.0103;FS=7.981;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-19.661;QD=0.71;ReadPosRankSum=-3.158;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:818,68:0.08:886
chr16	33961552	rs76049930	G	A	2069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.480;ClippingRankSum=0.000;DB;DP=1091;ExcessHet=3.0103;FS=13.030;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-17.397;QD=1.91;ReadPosRankSum=-4.702;SOR=2.482;set=HC	GT:AD:AF:DP	0/1:975,108:0.10:1083
chr16	33961555	rs77111738	C	A	3917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.423;ClippingRankSum=0.000;DB;DP=1144;ExcessHet=3.0103;FS=17.082;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-16.658;QD=3.45;ReadPosRankSum=-5.663;SOR=2.549;set=HC	GT:AD:AF:DP	0/1:1008,127:0.11:1135
chr16	33961556	rs75931509	A	G	7769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.777;ClippingRankSum=0.000;DB;DP=1158;ExcessHet=3.0103;FS=11.661;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-24.051;QD=6.77;ReadPosRankSum=-0.388;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:930,218:0.19:1148
chr16	33961563	rs112604583	C	G	6091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=1325;ExcessHet=3.0103;FS=4.557;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-21.754;QD=5.00;ReadPosRankSum=-10.139;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:996,222:0.18:1218
chr16	33961580	rs80277405	C	A	8178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;ClippingRankSum=0.000;DB;DP=1654;ExcessHet=3.0103;FS=4.052;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-21.001;QD=5.02;ReadPosRankSum=-9.423;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:1270,358:0.22:1628
chr16	33961607	rs77756910	G	T	16139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=2073;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-26.103;QD=7.82;ReadPosRankSum=1.771;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:1554,510:0.25:2064
chr16	33961625	.	C	A	3534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.291;ClippingRankSum=0.000;DP=2021;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-21.277;QD=1.75;ReadPosRankSum=1.959;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:1799,216:0.11:2015
chr16	33961628	rs72797455	A	G	17684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.704;ClippingRankSum=0.000;DB;DP=2024;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-35.093;QD=9.79;ReadPosRankSum=4.178;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:1263,543:0.30:1806
chr16	33961635	.	T	A	3137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DP=2029;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=56.39;MQRankSum=-18.901;QD=1.55;ReadPosRankSum=6.899;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:1827,197:0.10:2024
chr16	33961658	rs78363140	A	G	20083.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.189;ClippingRankSum=0.000;DB;DP=1900;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-32.352;QD=10.59;ReadPosRankSum=6.263;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:1311,585:0.31:1896
chr16	33961659	rs72797456	G	A	28059.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=1886;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-36.560;QD=14.90;ReadPosRankSum=5.817;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:1133,750:0.40:1883
chr16	33961671	.	C	A	14371.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DP=1717;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-25.054;QD=8.38;ReadPosRankSum=4.721;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:1292,423:0.25:1715
chr16	33961672	rs72797457	T	G	17727.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DB;DP=1685;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-32.354;QD=11.91;ReadPosRankSum=4.581;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:1013,475:0.32:1488
chr16	33961676	rs201135753	T	C	3776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=1581;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-15.973;QD=2.39;ReadPosRankSum=-0.970;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:1386,193:0.12:1579
chr16	33961689	rs75866886	G	A	14968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DB;DP=1415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-21.997;QD=10.59;ReadPosRankSum=0.802;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:994,419:0.30:1413
chr16	33961690	rs75534331	C	G	12124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.255;ClippingRankSum=0.000;DB;DP=1406;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-21.312;QD=8.65;ReadPosRankSum=-1.722;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:1049,352:0.25:1401
chr16	33961702	rs79080425	C	A	16660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=1191;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-26.007;QD=14.01;ReadPosRankSum=-1.397;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:747,442:0.37:1189
chr16	33961705	rs72797458	A	G	17125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=1129;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=55.99;MQRankSum=-28.372;QD=15.20;ReadPosRankSum=-2.446;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:685,442:0.39:1127
chr16	33961713	.	C	T	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.711;ClippingRankSum=0.000;DP=1032;ExcessHet=3.0103;FS=3.284;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-10.674;QD=1.44;ReadPosRankSum=-1.452;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:927,103:0.10:1030
chr16	33961725	rs76585222	G	A	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	0/1:672,119:0.15:791
chr16	33961748	.	C	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.622;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=29.363;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-13.929;QD=1.24;ReadPosRankSum=-0.926;SOR=3.862;set=HC	GT:AD:AF:DP	0/1:367,44:0.11:411
chr16	33961751	rs79409546	C	A	88.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-6.582;QD=0.24;ReadPosRankSum=1.150;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:336,33:0.09:369
chr16	33961752	rs77324679	T	C	3089.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=25.594;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-17.286;QD=8.54;ReadPosRankSum=0.315;SOR=1.900;set=HC	GT:AD:AF:DP	0/1:273,89:0.25:362
chr16	33961752	.	TT	CG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=112;MMLQ=24;MQ=50.74;NF=14;NR=78;PP=2944;QD=20;SC=GTGGCCCGGCTTTGCCTGAGG;SbPval=0.81;Source=Platypus;TC=279;TCF=55;TCR=224;TR=92;WE=33961802;WS=33961738;set=Platypus	GT:AD:AF:DP	1/0:187,92:0.33:279
chr16	33961753	.	T	G	2664.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DP=353;ExcessHet=3.0103;FS=17.991;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-16.863;QD=7.66;ReadPosRankSum=-0.076;SOR=1.653;set=HC	GT:AD:AF:DP	0/1:265,83:0.24:348
chr16	33961759	.	G	C	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.033;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=35.774;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-11.430;QD=1.85;ReadPosRankSum=-3.050;SOR=4.081;set=HC	GT:AD:AF:DP	0/1:252,32:0.11:284
chr16	33961768	rs115947274	T	G	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-12.052;QD=4.47;ReadPosRankSum=-1.437;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:173,35:0.17:208
chr16	33961810	rs78551646	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.940;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-8.102;QD=1.39;ReadPosRankSum=1.169;SOR=1.654;set=HC	GT:AD:AF:DP	0/1:95,11:0.10:106
chr16	33961855	.	T	G	1222	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=1;HapScore=3;MGOF=64;MMLQ=24;MQ=53.33;NF=11;NR=16;PP=1222;QD=46.5470819462;SC=CCCGCCCGCGTATCCTCTCTC;SbPval=0.45;Source=Platypus;TC=72;TCF=27;TCR=45;TR=27;WE=33961889;WS=33961836;set=Platypus	GT:AD:AF:DP	1/0:45,27:0.38:72
chr16	33962391	rs77260646	C	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-5.115;QD=5.49;ReadPosRankSum=-1.233;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr16	33962400	rs74410326	C	A	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-5.171;QD=6.58;ReadPosRankSum=0.373;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr16	33962412	rs72797477	A	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-4.423;QD=9.34;ReadPosRankSum=0.717;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr16	33962416	rs75367546	G	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-3.990;QD=11.11;ReadPosRankSum=-0.226;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr16	33962434	rs149073555	CG	C	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-3.495;QD=14.34;ReadPosRankSum=1.441;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr16	33962446	rs117915306	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-3.495;QD=14.65;ReadPosRankSum=1.886;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr16	33962456	rs75550881	G	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-3.158;QD=16.64;ReadPosRankSum=2.026;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr16	33962470	rs74988619	C	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-3.547;QD=18.66;ReadPosRankSum=2.962;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr16	33962479	rs74016524	T	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-3.547;QD=14.94;ReadPosRankSum=2.968;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr16	33965407	rs140145020	T	C	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.327;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=9.718;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-1.965;QD=2.76;ReadPosRankSum=2.672;SOR=2.871;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr16	33965456	rs79575365	T	C	2537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.959;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=14.696;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-7.539;QD=10.71;ReadPosRankSum=-1.956;SOR=1.577;set=HC	GT:AD:AF:DP	0/1:169,68:0.29:237
chr16	33965459	rs112675472	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.930;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=3.649;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-11.010;QD=0.32;ReadPosRankSum=-0.930;SOR=1.263;set=HC	GT:AD:AF:DP	0/1:238,17:0.07:255
chr16	33965460	rs112558134	G	A	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.411;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=9.309;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-2.053;QD=7.39;ReadPosRankSum=-1.323;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:201,57:0.22:258
chr16	33965474	.	C	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-14.015;QD=0.83;ReadPosRankSum=-2.014;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:325,33:0.09:358
chr16	33965482	rs370138825	GA	G	2873.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.361;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=4.323;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-1.409;QD=6.46;ReadPosRankSum=0.798;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:353,92:0.21:445
chr16	33965484	.	G	T	512.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DP=458;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-17.091;QD=1.13;ReadPosRankSum=-3.261;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:401,52:0.11:453
chr16	33965489	.	A	T	3224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.122;ClippingRankSum=0.000;DP=508;ExcessHet=3.0103;FS=5.445;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-0.855;QD=6.42;ReadPosRankSum=1.430;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:401,101:0.20:502
chr16	33965493	.	T	C	3744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.697;ClippingRankSum=0.000;DP=547;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-0.676;QD=6.92;ReadPosRankSum=1.262;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:431,110:0.20:541
chr16	33965496	.	A	T	4033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DP=584;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-0.165;QD=6.98;ReadPosRankSum=0.133;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:453,125:0.22:578
chr16	33965505	rs375920374	C	T	4391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=741;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-0.901;QD=6.01;ReadPosRankSum=-0.013;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:567,164:0.22:731
chr16	33965507	rs74614199	G	C	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-21.504;QD=2.00;ReadPosRankSum=-0.208;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:673,82:0.11:755
chr16	33965518	.	G	C	1855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.083;ClippingRankSum=0.000;DP=873;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-19.675;QD=2.14;ReadPosRankSum=0.452;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:771,97:0.11:868
chr16	33965520	.	C	T	1976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.054;ClippingRankSum=0.000;DP=889;ExcessHet=3.0103;FS=2.968;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-19.360;QD=2.24;ReadPosRankSum=0.309;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:783,101:0.11:884
chr16	33965529	rs437324	C	T	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.515;ClippingRankSum=0.000;DB;DP=962;ExcessHet=3.0103;FS=5.544;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-18.140;QD=2.21;ReadPosRankSum=-0.155;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:836,121:0.13:957
chr16	33965533	rs78817399	A	C	13896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.357;ClippingRankSum=0.000;DB;DP=1007;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-15.119;QD=13.87;ReadPosRankSum=1.528;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:626,376:0.38:1002
chr16	33965537	.	C	T	4202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.199;ClippingRankSum=0.000;DP=1029;ExcessHet=3.0103;FS=5.340;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-16.890;QD=4.11;ReadPosRankSum=0.199;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:885,138:0.13:1023
chr16	33965538	rs146300192	A	G	15488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.820;ClippingRankSum=0.000;DB;DP=1036;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-15.097;QD=15.05;ReadPosRankSum=2.989;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:643,386:0.38:1029
chr16	33965542	.	C	T	6953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DP=1093;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-0.290;QD=6.40;ReadPosRankSum=4.987;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:855,232:0.21:1087
chr16	33965560	rs75603223	T	A	22491.77	.	AC=1;AF=0.500;AN=2;DB;DP=1304;set=Intersection	GT:AD:AF:DP	0/1:712,585:0.45:1297
chr16	33965563	.	C	T	7168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;ClippingRankSum=0.000;DP=1309;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-12.937;QD=5.51;ReadPosRankSum=-1.345;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:1050,252:0.19:1302
chr16	33965582	rs199951204	C	T	10785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.002;ClippingRankSum=0.000;DB;DP=1333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-3.060;QD=8.17;ReadPosRankSum=2.483;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:984,336:0.25:1320
chr16	33965589	rs62030476	G	A	18374.77	.	AC=1;AF=0.500;AN=2;DB;DP=1313;set=Intersection	GT:AD:AF:DP	0/1:672,626:0.48:1298
chr16	33965618	.	C	T	6393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;ClippingRankSum=0.000;DP=1334;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-17.797;QD=4.89;ReadPosRankSum=0.455;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:1078,230:0.18:1308
chr16	33965627	.	T	A	7949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;ClippingRankSum=0.000;DP=1217;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-10.609;QD=8.10;ReadPosRankSum=0.923;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:727,254:0.26:981
chr16	33965636	.	G	A	7210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212;ClippingRankSum=0.000;DP=1092;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-0.040;QD=6.72;ReadPosRankSum=0.677;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:844,229:0.21:1073
chr16	33965642	.	TGA	T	5259.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.053;ClippingRankSum=0.000;DP=1001;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-15.057;QD=5.35;ReadPosRankSum=0.659;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:806,177:0.18:983
chr16	33965644	rs72799208	A	G	14793.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=972;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=3.947;QD=15.51;ReadPosRankSum=0.039;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:558,396:0.42:954
chr16	33965646	.	G	A	7102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DP=945;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-6.065;QD=9.32;ReadPosRankSum=1.478;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:560,202:0.27:762
chr16	33965655	rs113687113	C	T	6019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=3.874;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=3.229;QD=9.38;ReadPosRankSum=1.743;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:475,167:0.26:642
chr16	33965665	rs74016532	C	T	3888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.957;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=3.553;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-7.500;QD=5.54;ReadPosRankSum=1.807;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:577,125:0.18:702
chr16	33965666	.	G	A	4080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.615;QD=5.94;ReadPosRankSum=-0.223;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:557,130:0.19:687
chr16	33965669	.	C	G	3780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DP=665;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.529;QD=5.80;ReadPosRankSum=-0.037;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:530,122:0.19:652
chr16	33965672	.	C	T	4278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DP=627;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.061;QD=6.97;ReadPosRankSum=0.834;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:480,134:0.22:614
chr16	33965681	.	G	GA	2872.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.477;QD=5.23;ReadPosRankSum=0.508;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:449,100:0.18:549
chr16	33965684	.	C	T	3752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DP=519;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.543;QD=7.40;ReadPosRankSum=0.137;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:393,114:0.22:507
chr16	33965687	rs78198861	C	T	2648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.941;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=4.580;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.095;QD=5.62;ReadPosRankSum=-1.536;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:384,87:0.18:471
chr16	33965688	.	G	C	3543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DP=475;ExcessHet=3.0103;FS=2.267;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.543;QD=7.64;ReadPosRankSum=0.264;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:360,104:0.22:464
chr16	33965690	rs74964080	C	T	3076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.523;QD=6.98;ReadPosRankSum=0.058;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:348,93:0.21:441
chr16	33965708	.	G	A	1213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.764;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:205,42:0.17:247
chr16	33965711	rs76711006	G	A	5612.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:97,138:0.59:235
chr16	33965725	.	T	TC	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.033;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:156,15:0.09:171
chr16	33965727	.	C	T	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-0.298;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:143,35:0.20:178
chr16	33965729	.	T	C	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.697;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:147,15:0.09:162
chr16	33965731	.	C	T	1007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=-1.094;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:126,33:0.21:159
chr16	33965735	.	C	T	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=-0.359;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:121,29:0.19:150
chr16	33965736	rs74212775	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-1.567;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:135,15:0.10:150
chr16	33965741	rs111610856	C	T	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-2.843;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:86,50:0.37:136
chr16	33965754	rs111429621	C	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.684;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:115,10:0.08:125
chr16	34318731	rs6563853	T	G	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,191:0.99:192
chr16	34681938	rs237988	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	34682019	rs237989	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	46565019	rs1436436	T	G	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	46602819	rs12934443	C	T	8641.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:183,404:0.69:587
chr16	46637746	rs4967259	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.26;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	46642114	.	GGT	G	47	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=27;MQ=60.0;NF=3;NR=0;PP=47;QD=18.3333333333;SC=AGTGAGTGTGGGTGTGTGTGT;SbPval=0.06;Source=Platypus;TC=13;TCF=5;TCR=8;TR=3;WE=46642123;WS=46642104;set=Platypus	GT:AD:AF:DP	1/0:10,3:0.23:13
chr16	46642456	rs8052092	A	G	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	46651417	rs34949348	TA	T	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	46655210	rs6598679	A	G	9911.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,388:1.00:388
chr16	46696284	rs168745	G	A	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	46697098	rs2304492	A	G	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,35:0.83:42
chr16	46705502	rs36310	T	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	46714529	rs700582	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	46715191	rs700581	G	A	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	46723598	rs33994299	T	C	6934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=2.794;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:183,332:0.64:515
chr16	46743355	rs11420228	G	GA	340.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr16	46743675	rs4141491	G	A	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr16	46755213	rs194055	C	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	46764482	rs36460	A	C	3709.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	46773999	rs28407821	C	A	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:19,75:0.80:94
chr16	46943786	.	A	G	2570.77	.	AC=1;AF=0.500;AN=2;DP=390;set=Intersection	GT:AD:AF:DP	0/1:235,144:0.38:379
chr16	47347780	rs2058769	G	A	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	47462851	rs17811434	A	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	47581480	.	G	GT	48	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=10;HapScore=2;MGOF=1;MMLQ=26;MQ=60.28;NF=0;NR=6;PP=48;QD=10.0;SC=GATTTCTGAGGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=24;TCF=1;TCR=23;TR=6;WE=47581488;WS=47581470;set=Platypus	GT:AD:AF:DP	0/1:18,6:0.25:24
chr16	47684686	rs150516784	TATTA	T	1251.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	48122582	rs7193955	G	A	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	48174559	rs16945869	G	A	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:39,110:0.74:149
chr16	48175235	rs16945874	G	T	5131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=2.787;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:110,244:0.69:354
chr16	48201131	rs41280939	C	G	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr16	48201432	rs16945916	T	C	6755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-0.477;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:168,321:0.66:489
chr16	48201707	rs16945917	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	48227748	rs139789251	C	CG	859.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr16	48227862	rs11866251	G	A	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:49,116:0.70:165
chr16	48234327	rs16945930	C	T	2851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.591;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-2.570;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:414,181:0.30:595
chr16	48247523	rs11866529	T	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr16	48248918	rs8047091	T	C	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr16	48250011	rs11863233	G	A	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.700;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:60,71:0.54:131
chr16	48250026	rs11863236	G	T	1817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-2.682;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:69,90:0.57:159
chr16	48250218	rs28654935	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=1.317;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr16	48250221	rs28376623	G	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.90;ReadPosRankSum=0.586;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr16	48256484	rs16945972	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	48256602	rs16945974	T	C	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:40,101:0.72:141
chr16	48258198	rs17822931	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-1.332;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr16	48258381	rs73546424	T	A	3033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=1.916;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:80,147:0.65:227
chr16	48258419	rs9927238	C	A	3194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.15;ReadPosRankSum=-0.024;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:41,97:0.70:138
chr16	48258424	rs9933821	T	C	3097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.61;ReadPosRankSum=0.417;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:27,60:0.69:87
chr16	48264617	rs13336759	A	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr16	48265777	rs16945988	C	T	2133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-1.678;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:58,106:0.65:164
chr16	48292513	rs16946038	A	G	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=0.677;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:50,74:0.60:124
chr16	48329918	rs5816590	TC	T	897.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr16	48390780	rs150126658	TA	T	365.80	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr16	48419291	.	GGCC	G	1310.73	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr16	48579938	rs57931869	C	CA	216.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	49314837	rs61735589	T	G	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:45,83:0.65:128
chr16	49412531	rs27813	A	G	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-1.909;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:127,57:0.31:184
chr16	49557441	rs2287313	A	C	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	49557482	rs2287314	C	T	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr16	49669736	rs113531514	C	T	7412.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:161,346:0.68:507
chr16	49670390	rs3803667	A	G	2853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=869;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.103;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:640,211:0.25:851
chr16	49672520	rs3803665	A	G	10114.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr16	49764948	rs2292155	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	50059279	rs9934704	C	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	50059314	rs9924833	A	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	50059500	rs7194313	C	T	4309.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	50067905	rs9302745	G	A	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	50069228	rs9927260	G	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr16	50069312	rs2041918	C	G	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=1.206;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr16	50100253	rs4389139	T	A	2413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.162;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:530,182:0.26:712
chr16	50102618	rs60730387	G	GAAAT	4081.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	50102676	.	A	G	4878.77	.	AC=1;AF=0.500;AN=2;DP=360;set=Intersection	GT:AD:AF:DP	0/1:128,225:0.64:353
chr16	50106594	rs2287197	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=2.187;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr16	50109478	rs12931497	G	A	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.110;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:129,41:0.24:170
chr16	50112971	rs66756058	GT	G	31.52	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	50117828	rs5816672	CT	C	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.799;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:63,51:0.45:114
chr16	50118245	rs877639	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.263;SOR=1.200;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr16	50187677	.	G	C	2627.73	.	AC=1;AF=0.500;AN=2;DP=229;set=Intersection	GT:AD:AF:DP	0/1:84,126:0.60:210
chr16	50251671	.	G	GTCTCTCTCTCTCTCTCTCTCTCTCCCTC	729.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.49;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	50261735	rs4624170	C	T	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	50323211	rs13332825	T	C	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.611;QD=3.79;ReadPosRankSum=-1.206;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:98,37:0.27:135
chr16	50326661	rs8051594	A	G	15295.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,602:1.00:602
chr16	50327439	rs2302712	A	G	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:31,106:0.77:137
chr16	50327456	rs2302713	C	T	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.00;SOR=2.033;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	50327456	.	CCCACCG	TCCACCA,TCCACCG	659	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=16;MMLQ=27;MQ=60.0;NF=7,8;NR=31,46;PP=659,92;QD=18.7491546016;SC=GGGGACTGGGCCCACCGTTCC;SbPval=0.34;Source=Platypus;TC=54;TCF=8;TCR=46;TR=38,54;WE=50327470;WS=50327446;set=Platypus	GT:AF:DP	0/1:0.70:54
chr16	50327462	rs2302714	G	A	1401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=-2.117;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:18,59:0.77:77
chr16	50328421	rs2302716	T	C	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	50328483	rs8061123	G	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:106,48:0.31:154
chr16	50339668	rs56135636	G	A	5484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=-1.001;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:121,263:0.68:384
chr16	50342658	rs17289102	C	T	3720.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:73,175:0.71:248
chr16	50342847	rs2302681	C	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	50345710	.	GCCC	G	4485.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.59;ReadPosRankSum=1.386;SOR=0.342;set=HC	GT:AD:AF:DP	1/1:17,125:0.88:142
chr16	50345716	.	C	A	2354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=2.076;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:37,105:0.74:142
chr16	50346748	rs3214383	T	TCC	1143.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	50348409	rs9926131	A	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	50354039	rs55820113	CAAAA	C	838.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr16	50355741	rs9922362	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr16	50367633	rs56370009	T	TA	194.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	50402240	rs62029995	C	G	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr16	50402478	.	CG	C	127.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=25.55;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	50402485	rs112456327	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.35;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	50642201	rs933566	G	C	10060.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr16	50731096	rs5743266	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr16	50733374	rs2076753	G	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr16	50733859	rs2067085	C	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:119,45:0.27:164
chr16	50733969	rs2111235	A	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	50743919	rs34133110	C	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.157;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:117,45:0.28:162
chr16	50744624	rs2066842	C	T	4270.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:57,189:0.77:246
chr16	50745199	rs2066843	C	T	8340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=1.970;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:176,390:0.69:566
chr16	50745583	rs1861759	T	G	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:148,101:0.41:249
chr16	50756996	.	TA	T	58	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=0.9987;HP=16;HapScore=3;MGOF=67;MMLQ=26;MQ=58.4;NF=2;NR=0;PP=58;QD=30.5;SC=CTAAAAAAGCTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=50757005;WS=50756990;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	50757383	.	C	T	242.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr16	50759267	rs138198313	AC	A	106.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.89;ReadPosRankSum=1.533;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr16	50759269	rs4990643	T	A	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.65;ReadPosRankSum=1.486;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr16	50759547	rs1077861	A	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.383;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr16	50827601	rs2302759	A	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	50841484	rs1054987	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:65,23:0.26:88
chr16	51170930	.	A	AGGGGC	2063.73	.	AC=1;AF=0.500;AN=2;DP=133;set=Intersection	GT:AD:AF:DP	0/1:72,54:0.43:126
chr16	51171175	rs4614723	C	T	7675.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr16	51173559	rs1965024	G	A	9521.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr16	51177113	rs4399530	A	C	201.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	51177327	rs34204387	G	GAA,GAAA	5395.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.198;QD=27.53;ReadPosRankSum=2.436;SOR=0.866;set=HC	GT:AD:AF:DP	1/2:4,131,61:0.67,0.31:196
chr16	52107849	rs33338	C	A	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	52473263	rs9925256	A	G	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:111,59:0.35:170
chr16	52478206	rs3743796	C	T	1625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=1.095;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:106,47:0.31:153
chr16	52478215	rs3743797	C	T	1648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=1.511;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:112,49:0.30:161
chr16	52479771	rs2075236	A	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr16	52502318	rs2287144	A	G	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.290;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	52502571	rs9928698	A	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	52580500	rs3095602	G	A	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.652;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:81,34:0.30:115
chr16	52837322	rs4784259	A	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=-1.559;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr16	52837573	rs117379808	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.343;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.000;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr16	52992947	rs9933492	T	C	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	52993016	rs9931362	A	C	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.03;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr16	53035331	rs74018575	A	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr16	53308149	rs61747627	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.701;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr16	53341748	rs6499548	T	G	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	53341803	rs61747411	A	G	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:119,167:0.58:286
chr16	53404203	rs10775327	C	A	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	53476804	rs17800577	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr16	53481010	rs17800727	A	G	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.372;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr16	53493346	rs66521736	AT	A	92.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr16	53496598	rs7204496	G	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr16	53503934	rs1131220	G	A	4871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=0.507;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:386,148:0.28:534
chr16	53503943	rs11540358	C	G	4827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.194;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.698;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:379,147:0.28:526
chr16	53504721	rs10748	T	C	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.117;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:157,64:0.29:221
chr16	53513033	rs8043918	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:183,72:0.28:255
chr16	53513055	rs8049033	T	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:189,76:0.29:265
chr16	53524308	rs3929	G	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr16	53526551	rs9931702	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:63,41:0.39:104
chr16	53635933	rs4784319	A	T	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr16	53672355	rs7203525	C	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-1.065;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr16	53682949	rs2302677	C	T	7269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.437;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:174,351:0.67:525
chr16	53692199	rs7192060	T	C	443.28	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=2.068;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr16	53699003	rs4133017	G	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	53860481	rs3826169	G	A	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr16	53878247	rs62033438	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	53913930	rs11076004	G	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr16	53945238	rs117088391	C	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr16	54318102	rs8050831	C	T	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	54318528	rs1450355	A	G	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,72:0.97:74
chr16	54319571	rs1868692	A	G	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	54319994	rs1868691	G	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	54691273	rs4784409	C	A	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:43,98:0.70:141
chr16	55360200	.	TG	T	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=4.541;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.089;QD=1.82;ReadPosRankSum=-0.335;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr16	55516708	rs857403	T	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr16	55519607	rs1053605	C	T	4040.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:80,187:0.70:267
chr16	55523545	rs17242473	G	A	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:503,250:0.33:753
chr16	55523705	rs243849	T	C	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:78,169:0.68:247
chr16	55525913	rs243846	G	C	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:38,99:0.72:137
chr16	55527026	rs11640428	A	T	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.643;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=10.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=-0.652;SOR=0.038;set=HC	GT:AD:AF:DP	0/1:10,36:0.78:46
chr16	55527113	rs2287074	G	A	3588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=1.329;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:89,169:0.66:258
chr16	55527298	rs243843	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr16	55530772	rs243838	T	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=2.104;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr16	55532458	rs2287076	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr16	55536622	rs243835	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.242;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr16	55536687	rs243834	A	G	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.278;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:143,47:0.25:190
chr16	55539191	rs243832	C	G	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-2.626;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:73,34:0.32:107
chr16	55543322	rs2241147	G	T	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:33,99:0.75:132
chr16	55562257	rs837549	G	A	268.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	55562466	rs837550	G	A	6242.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:118,292:0.71:410
chr16	55579899	rs2397722	G	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	55583149	rs2160277	T	A	1100.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr16	55583448	rs9934904	A	T	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	55601388	rs1502003	A	G	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.386;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:190,59:0.24:249
chr16	55725975	rs5564	A	G	8416.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:179,402:0.69:581
chr16	55728081	rs28613651	T	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	55729124	rs2279805	T	C	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	55730124	rs5568	A	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-1.309;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:132,44:0.25:176
chr16	55735912	rs2242447	C	T	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:178,76:0.30:254
chr16	55806311	rs28538364	G	T	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	55806409	rs28366434	T	C	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	55806532	rs143032941	C	CAATACCT	2255.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	55807252	rs62030211	G	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.95;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	55807256	rs60044394	A	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.95;QD=39.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	55813552	rs28666799	C	T	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=26.58;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	55813600	rs28538101	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.94;QD=24.96;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	55813644	rs28418425	C	T	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.83;QD=24.65;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	55813712	rs28613114	G	T	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.89;QD=22.20;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	55844609	rs2244613	G	T	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.278;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:275,63:0.19:338
chr16	55844617	rs2244614	G	A	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=2.059;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:261,58:0.18:319
chr16	55845084	.	T	TG	194.73	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:65,14:0.18:79
chr16	55845122	rs146150314	C	CA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.667;QD=1.85;ReadPosRankSum=1.154;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr16	55847045	rs3859092	A	G	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.774;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr16	55847051	rs3859093	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.301;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:48,8:0.14:56
chr16	55854452	rs2307233	G	A	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-1.321;QD=2.88;ReadPosRankSum=2.584;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:128,20:0.14:148
chr16	55854455	rs2307235	A	C	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-1.321;QD=2.88;ReadPosRankSum=2.571;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:128,20:0.14:148
chr16	55855150	rs3217164	TG	T	667.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=0.414;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:211,36:0.15:247
chr16	55857396	rs150951789	A	C	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=50.23;MQRankSum=-4.049;QD=1.49;ReadPosRankSum=-1.485;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:142,30:0.17:172
chr16	55862605	rs3848300	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-4.242;QD=1.44;ReadPosRankSum=-0.885;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:196,44:0.18:240
chr16	55862717	rs76828834	T	C	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.105;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:339,48:0.12:387
chr16	55862720	rs74019278	T	C	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.712;QD=1.93;ReadPosRankSum=0.052;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:333,45:0.12:378
chr16	55862824	rs3826192	C	T	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-18.553;QD=2.35;ReadPosRankSum=1.073;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:515,76:0.13:591
chr16	55862836	rs3826191	G	A	1522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.925;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-18.640;QD=2.31;ReadPosRankSum=0.922;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:569,90:0.14:659
chr16	55862883	rs3826190	C	A	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-20.977;QD=1.86;ReadPosRankSum=2.624;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:813,109:0.12:922
chr16	55862901	rs3826189	T	G	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=953;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-20.314;QD=1.47;ReadPosRankSum=1.984;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:850,98:0.10:948
chr16	55866894	rs56278207	T	TA	3464.73	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:291,118:0.29:409
chr16	55883618	rs2160276	T	C	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	55883761	rs7186875	A	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	55905636	rs3859108	A	G	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr16	55905676	rs72810507	C	T	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,85:0.68:125
chr16	55907600	rs6416763	C	T	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	56226288	.	C	T	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.020;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:231,100:0.30:331
chr16	56226638	rs374523415	GCA	G	175.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr16	56227965	rs59779556	T	G	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=0.494;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:53,30:0.36:83
chr16	56228066	rs1190761	A	G	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	56362725	rs2241952	T	C	8305.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr16	56368495	rs4784656	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr16	56368689	rs1065375	C	T	8471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.023;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:211,406:0.66:617
chr16	56503762	.	CA	C	72.73	.	AC=1;AF=0.500;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=8.08;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr16	56548501	rs4784677	C	T	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	56599221	rs182221	C	G	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	56601720	rs666636	A	G	10304.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	56601720	.	ATT	GTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=23;MQ=59.79;NF=54;NR=74;PP=2947;QD=20;SC=TGTAAAACATATTGGAAGAGT;SbPval=0.57;Source=Platypus;TC=131;TCF=56;TCR=75;TR=128;WE=56601730;WS=56601710;set=Platypus	GT:AD:AF:DP	1/1:3,128:0.98:131
chr16	56601722	rs666647	T	C	10304.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	56602671	rs762604	C	T	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr16	56623191	rs7195310	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr16	56624079	rs11644094	A	G	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-1.372;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:37,51:0.58:88
chr16	56660906	rs708274	G	T	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.318;QD=4.16;ReadPosRankSum=0.685;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:256,99:0.28:355
chr16	56666886	rs1827208	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.97;ReadPosRankSum=-1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr16	56667282	rs1827210	C	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:41,134:0.77:175
chr16	56667614	rs2270836	C	T	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr16	56667854	rs2270837	A	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr16	56673227	rs11640851	C	A	4621.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:35,113:0.76:148
chr16	56673249	rs11647171	T	C	5353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.64;ReadPosRankSum=-0.103;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:50,151:0.75:201
chr16	56673290	rs7190725	G	T	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=4.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.141;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:253,83:0.25:336
chr16	56673410	rs8049883	G	A	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:118,55:0.32:173
chr16	56673436	rs58069153	A	AAG	3351.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	56673828	rs8052394	A	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:162,95:0.37:257
chr16	56686002	rs2070838	G	C	4324.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.58;ReadPosRankSum=-0.604;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:2,102:0.98:104
chr16	56686005	rs4619400	T	A	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.68;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	56686030	rs964372	C	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	56686380	rs2013775	T	C	15724.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.78;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,610:1.00:610
chr16	56686471	rs964374	G	T	18571.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=26.12;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,711:1.00:711
chr16	56693261	rs2291957	G	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr16	56701348	rs111359735	G	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.495;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=5.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=1.355;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:148,36:0.20:184
chr16	56702000	rs904770	T	C	5140.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.987;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.008;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=1.163;SOR=0.134;set=HC	GT:AD:AF:DP	1/1:2,201:0.99:203
chr16	56709728	rs8046181	GA	CG	10358.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	56716347	rs34713543	C	A	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:134,52:0.28:186
chr16	56904587	rs1529927	C	G	10173.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr16	56911932	rs3217425	G	GTCCCTCCC	2150.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.602;MLEAC=2;MLEAF=1.000;MQ=61.62;MQRankSum=1.116;QD=45.76;ReadPosRankSum=0.044;SOR=1.210;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr16	56913419	rs3816119	C	T	7300.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr16	56917953	rs2304483	T	C	4829.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	56919073	rs11076172	G	A	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.320;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:372,152:0.29:524
chr16	56919235	rs5802	G	A	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:357,152:0.30:509
chr16	56919348	rs12596776	C	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr16	56920969	rs5803	C	T	5316.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:154,258:0.63:412
chr16	56924160	rs3764264	C	T	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:58,107:0.65:165
chr16	56925894	rs2304482	C	T	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:70,97:0.58:167
chr16	56926176	rs12443855	G	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	56926793	rs2278490	C	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr16	56926828	rs2278489	T	A,C	3000.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=136;set=Intersection	GT:AF:DP	1/2:0.24,0.76:127
chr16	56928519	rs5804	C	T	6864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=1.981;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:140,324:0.70:464
chr16	56933315	rs9922270	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	56933519	rs11643718	G	A	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:189,92:0.33:281
chr16	56938290	rs2289116	G	A	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.662;QD=3.74;ReadPosRankSum=-0.282;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:255,93:0.27:348
chr16	56938387	rs2289115	C	T	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.395;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:181,60:0.25:241
chr16	56966011	rs37025	G	A	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr16	56966071	rs37024	T	G	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:284,151:0.35:435
chr16	56968889	rs1820787	G	A	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.637;QD=3.50;ReadPosRankSum=-1.147;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:128,47:0.27:175
chr16	56973335	rs2133783	A	G	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,9:0.20:45
chr16	56994394	rs61631085	GT	G	1327.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:4,76:0.95:80
chr16	56994528	rs17231506	C	T	6009.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr16	56994894	rs4783961	G	A	8597.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr16	56995038	rs4783962	T	C	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	56995236	rs1800775	C	A	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	56996158	rs3816117	T	C	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	56996211	rs711752	G	A	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	56996288	rs708272	G	A	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	57003723	rs891141	G	T	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	57003977	rs891142	T	C	16184.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr16	57003980	rs891143	T	C	16105.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=1.100;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr16	57004889	rs7205804	G	A	11236.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr16	57005301	rs1532625	C	T	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	57007451	rs289714	G	A	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	57015463	rs7195984	G	A	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	57015545	rs1800774	C	T	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	57016092	rs5882	G	A	6685.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	57017474	rs289741	G	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	57017762	rs289742	C	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	57057619	rs1684575	G	T	7200.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr16	57057654	rs1672865	A	G	10328.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr16	57059427	rs74439742	C	T	5549.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:114,257:0.69:371
chr16	57062177	rs1684576	T	A	8469.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr16	57065121	rs16965220	C	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr16	57065199	rs72780004	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr16	57067595	rs58124158	A	T	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,72:0.66:109
chr16	57071113	rs1684579	TA	CG	8091.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.72;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	57071232	rs1684580	C	G	13480.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,540:1.00:540
chr16	57071335	rs1651670	G	A	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	57071375	rs1672866	T	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	57073683	rs864750	G	C	8808.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr16	57074451	rs289726	T	C	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	57075781	rs289727	C	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	57076115	rs158482	T	G	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	57089130	rs1167512	C	A	5341.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:81,237:0.75:318
chr16	57091871	.	T	G	875.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr16	57095775	rs3751710	C	T	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-1.963;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:19,38:0.67:57
chr16	57095842	rs142124514	AAAAG	A	388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.448;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr16	57099295	rs75662143	G	A	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:24,72:0.75:96
chr16	57110635	rs10500405	C	T	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:21,95:0.82:116
chr16	57111825	rs27392	T	C	14653.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr16	57113229	rs42221	A	G	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	57114924	rs154045	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr16	57114982	rs154044	C	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:67,28:0.29:95
chr16	57115274	rs154043	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr16	57115604	rs77008839	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr16	57116287	rs27195	A	G	1761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-0.956;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:226,111:0.33:337
chr16	57116514	rs27194	T	A	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr16	57144920	rs8053682	TG	AC	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	57155457	rs4783976	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr16	57157206	rs2305696	C	T	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:70,104:0.60:174
chr16	57170936	rs72778715	G	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	57171233	rs2305693	C	G	10379.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr16	57197745	rs62037356	G	T	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	57206662	rs55680142	T	C	66.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	57249981	rs11391063	A	AT	2278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=4.476;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.000;QD=6.51;ReadPosRankSum=-0.892;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:166,184:0.53:350
chr16	57255363	rs7206038	T	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	57261146	rs11643790	A	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	57272961	rs3217258	ACT	A	670.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	57392733	rs4359426	A	C	7418.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr16	57392853	rs41498250	G	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr16	57397449	rs2229161	C	T	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=2.606;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:108,40:0.27:148
chr16	57438733	rs72792973	C	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.379;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:92,31:0.25:123
chr16	57470564	rs17375948	G	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:81,44:0.35:125
chr16	57474668	rs72780616	G	A	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=2.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.226;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:334,105:0.24:439
chr16	57474687	rs11557674	G	C	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.436;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:317,100:0.24:417
chr16	57481305	rs178602	T	C	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	57486613	rs686402	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr16	57494178	rs223868	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	57495026	rs223870	T	C	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	57496494	rs178601	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	57496748	rs56071497	G	T	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.063;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:149,53:0.26:202
chr16	57499841	rs223839	A	G	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=1.058;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:32,59:0.65:91
chr16	57499902	rs4937	T	C	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	57503213	rs601194	C	T	6496.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:173,315:0.65:488
chr16	57503773	rs223874	G	A	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	57507777	rs11458669	T	TC	1518.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:38,61:0.62:99
chr16	57508960	rs477025	T	C	3375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=3.156;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:85,153:0.64:238
chr16	57509164	rs223877	A	G	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	57509956	rs2074545	G	C	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.81;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	57509956	.	GGGGGC	CGGGGC,CGGGGT	555	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.5;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=19,6;NR=42,11;PP=555,126;QD=9.66838053356;SC=GCCTGCCACAGGGGGCGGTGC;SbPval=0.53;Source=Platypus;TC=61;TCF=19;TCR=42;TR=61,17;WE=57509969;WS=57509946;set=Platypus	GT:AF:DP	0/1:1.00:61
chr16	57509961	rs116927856	C	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-2.160;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:58,29:0.33:87
chr16	57551966	rs28649020	A	T	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr16	57552088	rs28756858	T	C	10966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=-1.770;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:269,536:0.67:805
chr16	57555076	rs28446687	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:33,74:0.69:107
chr16	57562423	rs8045906	T	C	11706.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr16	57562804	rs12935069	G	A	13455.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.01;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr16	57563111	rs4784815	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	57595999	rs1004363	A	G	3283.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:57,155:0.73:212
chr16	57596552	rs1859259	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr16	57601792	rs9937918	C	T	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:112,190:0.63:302
chr16	57624762	rs72791653	G	A	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-2.146;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:126,55:0.30:181
chr16	57625470	rs11646739	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr16	57687314	rs2305307	T	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	57689230	rs34289485	GGT	G	837.87	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr16	57689385	rs1801257	C	G	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	57689805	rs1801255	A	C	5582.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=-0.106;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:2,222:0.99:224
chr16	57689883	rs1376041	T	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	57690606	rs11866912	C	A	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	57691265	rs2305309	C	A	7219.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.787;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=1.837;SOR=0.296;set=HC	GT:AD:AF:DP	1/1:1,285:1.00:286
chr16	57693247	rs60907901	G	A	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	57697532	rs10852554	T	G	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:266,87:0.25:353
chr16	57697568	rs10852555	C	A	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.309;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:130,41:0.24:171
chr16	57702473	rs7205731	T	C	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=-1.795;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr16	57708297	rs4784841	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.146;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr16	57708416	rs8051879	C	T	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:33,109:0.77:142
chr16	57708483	rs4784842	T	C	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	57708642	rs4784003	T	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	57710093	rs12596635	C	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr16	57713250	rs4238795	C	T	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:96,178:0.65:274
chr16	57713536	rs4784006	G	A	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:54,80:0.60:134
chr16	57722328	rs12444859	C	T	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:56,127:0.69:183
chr16	57722576	rs11648336	T	A	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr16	57735900	rs7196016	G	C	10929.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:302,508:0.63:810
chr16	57736047	rs72795521	G	A	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:134,54:0.29:188
chr16	57738740	rs7194271	A	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr16	57738810	rs58373934	T	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.617;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:62,30:0.33:92
chr16	57741346	rs12933056	C	T	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:29,44:0.60:73
chr16	57741612	rs2122486	G	C	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:80,165:0.67:245
chr16	57755789	rs58935089	A	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr16	57756564	rs3826094	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:93,58:0.38:151
chr16	57756643	rs3809611	C	T	6129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-0.786;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:148,298:0.67:446
chr16	57758508	rs12598604	A	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr16	57759844	rs4784008	C	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr16	57762401	rs2923147	T	C	3057.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:43,144:0.77:187
chr16	57778488	rs2967152	A	G	7555.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	57778550	rs2967153	C	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	57786517	rs2965797	C	T	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	57786711	rs2965798	C	T	5237.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr16	57794888	rs2965799	A	T	11887.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr16	57795394	rs2967172	G	A	18381.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr16	57797913	rs11649013	C	T	10549.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr16	57803911	rs3803590	A	G	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,212:1.00:213
chr16	57805048	rs2967166	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	57805078	rs2965790	C	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	57805176	rs2967165	A	G	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	57806030	rs2965789	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	57850141	rs1477404	C	G	2319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.614;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:63,115:0.65:178
chr16	57896828	.	T	TC	501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=1.662;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr16	57918035	rs13338071	T	C	8673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=0.432;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:149,402:0.73:551
chr16	57921752	rs11076207	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr16	57935211	rs191259534	G	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr16	57935584	rs57419704	T	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr16	57937659	rs80124781	T	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr16	57937856	rs413562	G	C	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.105;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:113,38:0.25:151
chr16	57937895	rs437920	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:70,30:0.30:100
chr16	57950178	rs440565	G	C	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	57950270	rs4784871	C	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	57951394	rs3991715	T	G	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	57954268	rs166000	A	G	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	57957138	rs247065	G	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	57973989	rs2303779	G	A	5270.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:89,237:0.73:326
chr16	57974240	rs2303778	G	A	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	57984483	rs152143	G	A	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	57991123	rs34759686	GC	G	1944.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	57991317	rs503686	C	T	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	57992119	rs399634	T	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	57992424	rs78224588	G	A	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:168,104:0.38:272
chr16	57992499	rs73545176	C	G	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr16	57996932	rs17821448	G	A	5162.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:133,253:0.66:386
chr16	57996960	rs13336595	C	T	7733.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	57998345	rs3859043	C	T	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	57998543	rs75649887	A	G	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-1.509;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:120,56:0.32:176
chr16	58019065	rs35768173	TG	T	4365.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	58019070	rs2304485	G	T	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	58019253	rs2304486	G	C	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr16	58019396	rs9934227	G	A	22315.77	.	AC=2;AF=1.00;AN=2;DB;DP=869;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,863:1.00:863
chr16	58021395	rs2241771	A	C	8028.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr16	58030401	rs3743555	T	C	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	58030634	rs3743556	C	T	16992.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,666:1.00:666
chr16	58035652	rs12599089	A	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	58036347	rs3743560	G	A	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	58051178	rs4784022	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	58053161	rs3743562	C	T	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	58071263	rs28733439	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr16	58163079	.	C	T	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.669;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:187,49:0.21:236
chr16	58200464	rs112507755	ACT	A	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.503;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:225,30:0.12:255
chr16	58296542	rs9923694	T	C	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.94;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	58296545	rs3815802	G	A	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.94;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	58301248	.	G	A	138.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr16	58313566	rs6499945	T	G	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.68;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	58313578	rs71155257	CT	C	971.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=1.443;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:12,71:0.86:83
chr16	58313728	rs188622492	T	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,31:0.37:84
chr16	58318604	rs3815803	T	C	6318.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	58318721	rs11313996	AT	A	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.548;QD=9.61;ReadPosRankSum=-1.414;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr16	58320211	rs4784916	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	58327646	rs2288012	A	G	5669.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr16	58429176	.	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.170;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr16	58429241	rs80236227	A	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.91;ReadPosRankSum=0.437;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr16	58528736	rs371388096	T	TAA	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.304;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=10.109;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.800;QD=7.25;ReadPosRankSum=1.256;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:28,35:0.56:63
chr16	58528812	rs34720527	G	A	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:267,164:0.38:431
chr16	58533932	rs982697	A	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	58537897	rs2427787	G	A	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	58538662	rs9928398	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr16	58540037	.	CGTGTGTGTGT	C	1922.73	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr16	58540531	rs2271948	A	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr16	58540875	rs17821543	G	A	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:290,100:0.26:390
chr16	58544640	rs12597973	C	G	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=2.435;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:218,86:0.28:304
chr16	58545426	rs42945	A	G	9278.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr16	58549932	rs4784046	T	C	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	58550052	.	G	GCGGGGCGGTT	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.47;ReadPosRankSum=1.150;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr16	58550300	rs77328516	A	AAC	13700.73	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr16	58552228	rs2280397	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.423;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr16	58552921	rs3607	G	A	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	58552959	rs3169293	A	G	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:66,25:0.27:91
chr16	58554780	rs17821549	C	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-1.369;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr16	58557209	rs71155275	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.512;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.113;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr16	58561954	rs37057	T	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr16	58561966	rs35432891	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,12:0.24:51
chr16	58566304	rs37060	G	A	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:15,69:0.82:84
chr16	58571185	rs2244453	C	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.54;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	58571189	rs2243463	T	C	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=-0.175;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr16	58573901	rs246194	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr16	58573946	rs246195	C	T	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	58575489	rs11540994	G	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:231,92:0.28:323
chr16	58577315	rs5817153	GA	G	540.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-0.817;QD=6.36;ReadPosRankSum=-1.407;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:40,45:0.53:85
chr16	58577421	rs41260	C	T	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	58579158	rs42947	A	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr16	58579274	rs246258	C	T	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=-1.368;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:32,77:0.71:109
chr16	58580213	rs2241570	T	C	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.506;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:138,57:0.29:195
chr16	58580519	rs246197	A	C	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:54,125:0.70:179
chr16	58580530	rs173475	T	C	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:61,148:0.71:209
chr16	58587737	rs11866002	C	T	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=2.140;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:236,70:0.23:306
chr16	58589112	rs1568399	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-1.785;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr16	58616898	rs144285925	T	TA	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.622;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:116,38:0.25:154
chr16	58621010	rs35860581	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr16	58621603	rs72790280	C	T	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:59,95:0.62:154
chr16	58622596	rs34716647	TC	T	1083.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr16	58622604	rs34161389	G	A	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr16	58622842	rs34014750	G	C	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=5.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.509;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:106,49:0.32:155
chr16	58703878	.	C	CA	542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.549;QD=2.75;ReadPosRankSum=2.185;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:141,56:0.28:197
chr16	58703966	rs9923128	A	G	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-1.440;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:306,115:0.27:421
chr16	58704861	rs9806843	A	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr16	58709824	rs34833577	TG	T	915.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:89,54:0.38:143
chr16	58743454	rs30842	A	C	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	58750604	rs1058192	G	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	58757668	rs14221	A	C	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;MQ=59.85;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr16	58757683	rs257636	A	G	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;MQ=59.83;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	58767916	rs3217426	AGT	A	3129.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:4,129:0.97:133
chr16	59772686	rs62058499	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-0.983;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr16	59772759	.	C	CA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.83;ReadPosRankSum=-1.053;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	59772778	rs28369631	A	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.049;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr16	59785902	rs3743708	G	A	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-1.077;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:190,67:0.26:257
chr16	59785926	rs3743707	C	A	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.184;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:178,56:0.24:234
chr16	59786020	rs3743706	G	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-2.217;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr16	60393236	rs62048716	C	T	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=0.222;QD=3.73;ReadPosRankSum=-0.118;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:89,33:0.27:122
chr16	60393404	rs2407146	T	A	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr16	64982033	rs2280394	C	T	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chr16	65005462	rs12597529	G	A	2945.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:58,138:0.70:196
chr16	65016087	rs35213	A	C	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:50,112:0.69:162
chr16	65016285	rs35212	C	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-0.483;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:13,29:0.69:42
chr16	65025658	rs35196	T	C	1373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=-1.975;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:16,60:0.79:76
chr16	65025849	rs35194	A	G	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:51,80:0.61:131
chr16	65397282	rs3913028	A	G	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=0.475;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr16	65397291	rs58616603	T	C	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=0.562;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr16	65839621	rs139083721	CTCT	C	1751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=4.555;QD=13.37;ReadPosRankSum=0.957;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:77,54:0.41:131
chr16	66420885	rs1130844	C	T	4247.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:97,200:0.67:297
chr16	66432423	rs1049970	T	C	8537.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr16	66434571	rs6499082	G	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr16	66436460	rs113672170	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=0.659;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr16	66437131	rs1063438	A	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr16	66601057	.	C	CT	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.663;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:101,49:0.33:150
chr16	66646389	rs142157932	G	C	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr16	66646591	rs3743719	C	T	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr16	66730450	.	C	T	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.48;ReadPosRankSum=-0.485;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr16	66757487	.	G	GT	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.657;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:71,35:0.33:106
chr16	66757728	rs77481802	GA	G	862.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.458;QD=12.51;ReadPosRankSum=2.030;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,60:0.87:69
chr16	66759682	rs2305311	C	A	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	66759976	rs2305310	C	T	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	66762847	rs12599882	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	66776657	rs4407052	G	A	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	66789125	rs11075643	A	G	64.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	66792714	rs363156	T	C	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	66793226	rs363157	T	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	66812653	rs363161	T	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	66812797	rs363162	C	T	13913.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr16	66839540	.	CA	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.36;ReadPosRankSum=2.268;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr16	66842794	rs363169	A	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	66851224	rs9889170	T	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	66861470	rs11372346	C	CA	453.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.73;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	66861966	rs152164	G	A	7968.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	66885652	rs151460	A	G	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr16	66886496	rs375038584	AAAAG	A	547.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.99;MQRankSum=1.542;QD=11.18;ReadPosRankSum=0.611;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:11,38:0.78:49
chr16	66886505	rs369232559	GAAAAGAA	G	1126.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.99;MQRankSum=0.663;QD=22.53;ReadPosRankSum=1.611;SOR=0.407;set=HC	GT:AD:AF:DP	1/1:2,48:0.96:50
chr16	66886559	rs152168	G	A	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	66946894	rs150509525	CGT	C	1118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.143;QD=5.06;ReadPosRankSum=2.034;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:154,67:0.30:221
chr16	66951783	rs2271025	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr16	66958581	.	A	AAATAATAATAATAAT	967.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.787;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=8.835;QD=6.63;ReadPosRankSum=-1.221;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:113,33:0.23:146
chr16	66966799	rs3890213	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.397;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:93,21:0.18:114
chr16	66969321	.	GC	G	19398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DP=863;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.675;QD=22.72;ReadPosRankSum=3.846;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:266,588:0.69:854
chr16	66977094	rs2241409	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr16	66977997	rs8192925	A	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-1.090;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr16	67006838	rs3848289	G	A	3339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=1.945;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:452,209:0.32:661
chr16	67040619	.	C	T	6375.77	.	AC=1;AF=0.500;AN=2;DP=429;set=Intersection	GT:AD:AF:DP	0/1:126,299:0.70:425
chr16	67197776	rs5817616	C	CG	1185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.56;ReadPosRankSum=-0.500;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:6,49:0.89:55
chr16	67221050	rs9924876	A	G	9216.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:1,346:1.00:347
chr16	67233266	rs12923138	A	C	6523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=1.752;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:134,303:0.69:437
chr16	67235513	.	C	T	2100.77	.	AC=1;AF=0.500;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	0/1:39,95:0.71:134
chr16	67292201	rs41280898	G	A	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.353;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:153,45:0.23:198
chr16	67315128	.	C	CT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.405;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr16	67324957	rs27860	T	C	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	67660355	.	C	CA	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-0.601;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr16	67670472	.	GTA	G	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=6.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.630;SOR=2.086;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr16	67691668	rs6979	A	G	4734.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:119,219:0.65:338
chr16	67805993	rs57461753	CA	C	206.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.771;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:51,35:0.41:86
chr16	67841129	rs7199443	T	G	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:89,189:0.68:278
chr16	67859707	rs72393989	CAGG	C	2514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-2.724;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:309,89:0.22:398
chr16	67861134	rs2292316	C	G	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:60,115:0.66:175
chr16	67863451	rs3743733	T	C	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=-0.922;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:22,55:0.71:77
chr16	67876823	rs377516180	ACAG	A	5170.73	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:194,250:0.56:444
chr16	67902326	rs2271294	A	T	6190.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:113,292:0.72:405
chr16	67911517	rs8060686	T	C	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:55,143:0.72:198
chr16	67920049	rs73594554	G	A	6646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=1.773;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:163,312:0.66:475
chr16	67964203	rs1134760	T	C	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:67,176:0.72:243
chr16	67969930	rs20549	A	G	3482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=-1.025;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:61,158:0.72:219
chr16	67985706	rs2292318	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr16	67997920	rs3785100	T	C	5699.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:150,272:0.64:422
chr16	68013471	rs255049	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr16	68024995	rs255052	G	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:42,63:0.60:105
chr16	68025801	rs255051	G	C	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr16	68055495	rs13816	G	C	3584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-0.919;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:63,165:0.72:228
chr16	68057096	rs237831	T	C	5091.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	68088485	rs11555011	A	G	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:64,146:0.70:210
chr16	68100461	rs2285912	C	T	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:60,125:0.68:185
chr16	68112636	rs146627486	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr16	68119555	rs3743735	G	A	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-0.553;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:29,63:0.68:92
chr16	68155860	rs200192900	GTT	G	1126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-0.891;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:22,50:0.69:72
chr16	68160289	rs3815173	T	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr16	68172416	rs12596883	A	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr16	68192024	.	G	GA	126.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr16	68224582	rs7199588	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr16	68225515	rs12598	G	A	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:350,152:0.30:502
chr16	68286427	rs17688076	C	A	7271.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:138,337:0.71:475
chr16	68286578	rs11368218	GA	G	4231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.462;QD=17.86;ReadPosRankSum=-0.577;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:61,176:0.74:237
chr16	68288983	rs2290700	T	G	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr16	68289059	rs2290699	C	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:11,54:0.83:65
chr16	68289313	rs8062085	C	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr16	68293320	rs3743739	T	C	9016.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:191,420:0.69:611
chr16	68321859	rs2305811	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr16	68324925	rs144934246	T	A	273.41	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr16	68325665	rs10525504	G	GGTGT,GGTGTGTGTGTGTGTGTGTGTGTGTGT	1051.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=135;set=Intersection	GT:AF:DP	0/1:0.82:22
chr16	68335392	rs11350	T	C	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:21,69:0.77:90
chr16	68344363	rs8063446	A	C	4794.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:124,234:0.65:358
chr16	68344696	rs3803650	C	T	3414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=893;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=3.286;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:644,235:0.27:879
chr16	68344945	rs3743741	G	C	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=1.633;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:118,34:0.22:152
chr16	68356187	rs7203220	A	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	68356419	rs4783618	A	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=-0.303;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr16	68361974	rs73613962	T	G	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=1.292;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:23,70:0.75:93
chr16	68363181	rs1111571	G	A	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	68379860	rs8058517	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr16	68381516	rs7190134	G	A	1463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.07;ReadPosRankSum=0.216;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:13,68:0.84:81
chr16	68382447	rs2863975	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr16	68387373	rs1562479	C	T	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:100,66:0.40:166
chr16	68387457	rs61746794	C	T	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:55,103:0.65:158
chr16	68387496	rs1868159	A	C	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	68389772	rs1131933	C	T	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.106;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.231;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:108,54:0.33:162
chr16	68390697	rs61733486	C	T	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr16	68391189	rs7192234	C	G	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.806;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	68395061	rs2279540	T	C	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chr16	68395094	rs2279539	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:114,60:0.34:174
chr16	68395675	rs56899435	G	A	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:83,163:0.66:246
chr16	68397530	rs3826167	T	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	68397775	rs3743743	C	T	3793.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:102,185:0.64:287
chr16	68397909	rs1465470	A	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	68397916	rs1465469	T	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.000;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr16	68398862	rs73615919	C	T	7111.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:176,339:0.66:515
chr16	68398909	rs146266629	G	A	6256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-1.765;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:134,287:0.68:421
chr16	68398924	rs1868158	C	T	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=3.288;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:290,114:0.28:404
chr16	68573945	rs1182968	C	T	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	68591156	rs1728784	T	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	68591230	rs1728785	A	C	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	68591350	rs1645929	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	68598007	rs1177648	A	G	12887.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.25;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,491:1.00:491
chr16	68598744	rs34979386	A	ATTT	86.25	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	68710165	rs3118229	T	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	68711999	rs1952048	A	G	572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=1.153;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:83,37:0.31:120
chr16	68712217	rs2296410	T	C	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	68712730	rs8049247	C	A	6131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=-1.986;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:153,288:0.65:441
chr16	68713597	.	CAAAAAA	C	475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.645;QD=25.04;ReadPosRankSum=1.133;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr16	68713730	rs2296409	G	A	9660.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr16	68713823	rs2296408	C	A	12352.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr16	68716066	rs1886698	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.48;ReadPosRankSum=0.192;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr16	68716179	rs1886697	T	C	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	68716245	.	T	A	3634.77	.	AC=1;AF=0.500;AN=2;DP=243;set=Intersection	GT:AD:AF:DP	0/1:67,172:0.72:239
chr16	68718367	rs4783661	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-1.435;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr16	68718750	rs2281850	A	G	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	68719332	rs62057767	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr16	68721340	rs2296406	G	A	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	68721470	rs2296405	T	C	12313.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr16	68721533	rs1126933	G	C	2262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-1.159;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:408,157:0.28:565
chr16	68725783	rs2274239	G	A	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	68729112	rs8060790	A	G	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	68729785	rs17715450	C	A	19608.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	1/1:1,765:1.00:766
chr16	68771372	rs3743674	C	T	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;QD=25.63;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	68771418	rs147838237	C	CGCCCCAGCCCCGT	6282.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=44.56;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	68771547	rs3743675	G	C	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=23.89;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	68952939	rs3833052	A	AT	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=2.801;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:16,39:0.71:55
chr16	69007846	rs3743677	C	T	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-1.412;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:22,65:0.75:87
chr16	69143577	rs2232228	A	G	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-1.655;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:260,103:0.28:363
chr16	69194501	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-1.450;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr16	69370691	.	T	C	403.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr16	69377553	rs153060	A	G	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=0.263;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:12,40:0.77:52
chr16	69385426	rs72795299	G	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.893;QD=3.56;ReadPosRankSum=2.218;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr16	69395434	rs251796	A	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr16	69458779	rs1619397	G	A	4281.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:79,199:0.72:278
chr16	69492973	rs34120910	A	AT	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.525;QD=4.64;ReadPosRankSum=-0.992;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr16	69599803	rs8048032	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	69600312	.	GGGGAGACA	G	7073.73	.	AC=1;AF=0.500;AN=2;DP=363;set=Intersection	GT:AD:AF:DP	0/1:84,180:0.68:264
chr16	69600335	rs142292515	C	T	7161.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:75,183:0.71:258
chr16	69602249	rs9937747	A	G	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.39;ReadPosRankSum=2.531;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr16	69602279	.	GTATATATA	G	205	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=2;HapScore=1;MGOF=87;MMLQ=26;MQ=58.74;NF=0;NR=5;PP=205;QD=41.6;SC=GTGTGTGTGTGTATATATATA;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=5;WE=69602294;WS=69602269;set=Platypus	GT:AD:AF:DP	1/0:1,5:0.83:6
chr16	69704090	rs144073736	T	TA	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=0.106;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr16	69704122	rs72523664	C	CTG	535.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr16	69704204	rs3217435	CT	C	126.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	69719009	rs72783121	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-1.036;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr16	69752373	rs689453	C	T	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=1.443;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:38,69:0.64:107
chr16	69752464	rs689452	C	G	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	69776195	rs199683068	G	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=-0.667;QD=3.66;ReadPosRankSum=0.096;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:86,31:0.26:117
chr16	69778809	.	G	A	870.77	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr16	69782855	rs3811348	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-0.083;QD=1.67;ReadPosRankSum=-0.457;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr16	69783587	.	G	GT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.641;QD=3.08;ReadPosRankSum=2.389;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr16	69873992	rs2291959	T	G	2798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=0.721;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:74,137:0.65:211
chr16	69876164	rs9940315	A	G	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr16	69942608	rs5817677	AG	A	6088.73	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:95,211:0.69:306
chr16	69963355	rs1566452	G	A	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr16	69965024	rs2270840	A	T	7194.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr16	69965281	rs8052727	T	G	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	69965396	.	C	CT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.25;ReadPosRankSum=0.333;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:264,51:0.16:315
chr16	69965592	rs2291961	A	G	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	69967093	rs2102066	G	A	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	69967732	rs8047818	G	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	69967897	rs2270841	T	C	7035.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr16	69970000	rs2270842	T	G	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	69970329	rs1983016	A	G	8189.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	69973127	rs2270843	A	G	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	69973622	rs10712484	GC	G	5114.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	69973655	rs4985461	C	G	7582.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr16	69988359	rs2549095	A	G	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.65;QD=29.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	69988373	rs2549097	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.11;QD=28.99;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	69988463	rs78531533	C	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.15;MQRankSum=-2.200;QD=0.63;ReadPosRankSum=-5.732;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:83,8:0.09:91
chr16	69988473	rs80122082	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.15;MQRankSum=-2.200;QD=0.63;ReadPosRankSum=-7.508;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:83,8:0.09:91
chr16	70010458	rs3206834	G	A	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	70016416	rs3748385	T	A	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	70068086	rs34921671	G	C	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	70076912	rs58544385	GA	G	754.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.61;MQRankSum=-3.374;QD=10.78;ReadPosRankSum=-0.115;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:12,58:0.83:70
chr16	70099593	rs889377	T	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.64;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	70154480	rs200469748	A	G	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.431;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-18.199;QD=2.91;ReadPosRankSum=-0.309;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:300,93:0.24:393
chr16	70161263	rs2549532	T	C	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.89;QD=29.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	70162581	rs71151174	TC	T	739.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr16	70163691	rs4985506	C	T	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:569,143:0.20:712
chr16	70163825	rs4985403	G	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-9.034;QD=3.81;ReadPosRankSum=1.782;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr16	70164248	rs7206450	T	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=0.296;QD=3.48;ReadPosRankSum=1.385;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr16	70164334	rs10852462	A	G	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:170,105:0.38:275
chr16	70164741	rs2549541	T	C	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:221,142:0.39:363
chr16	70165439	rs62050965	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr16	70165793	rs4985507	G	C	4017.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:446,239:0.35:685
chr16	70165914	rs2113175	T	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr16	70166225	rs2549550	C	A	1765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-3.694;QD=5.83;ReadPosRankSum=0.146;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:199,104:0.34:303
chr16	70170004	rs8045700	C	A	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.722;MLEAC=1;MLEAF=0.500;MQ=49.90;MQRankSum=1.522;QD=16.94;ReadPosRankSum=-1.487;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr16	70170016	rs8045569	A	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=44.77;MQRankSum=1.323;QD=12.85;ReadPosRankSum=0.416;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr16	70170222	rs59034887	G	T	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=0.509;QD=1.26;ReadPosRankSum=0.910;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:534,109:0.17:643
chr16	70172773	rs114934918	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=2.897;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=-2.987;QD=1.48;ReadPosRankSum=-0.820;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:209,47:0.18:256
chr16	70172890	rs142218067	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=46.04;MQRankSum=-2.257;QD=2.23;ReadPosRankSum=0.177;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:116,29:0.20:145
chr16	70176321	rs113493832	CT	C	977.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=0.123;QD=2.31;ReadPosRankSum=-0.692;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:283,141:0.33:424
chr16	70176451	rs202169520	C	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=48.48;MQRankSum=-0.729;QD=0.68;ReadPosRankSum=-2.184;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:250,41:0.14:291
chr16	70177577	rs2303198	G	A	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:235,199:0.46:434
chr16	70177618	rs7191901	G	A	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:113,95:0.46:208
chr16	70177648	rs2303200	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,65:0.51:127
chr16	70181537	rs145995386	C	T	2743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=46.62;MQRankSum=-2.983;QD=17.37;ReadPosRankSum=-0.746;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:25,133:0.84:158
chr16	70182325	rs55843501	T	C	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.55;QD=29.80;SOR=2.472;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	70182375	rs62050977	T	C	3069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.023;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=54.70;MQRankSum=2.978;QD=9.14;ReadPosRankSum=-2.784;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:247,89:0.26:336
chr16	70182390	rs62050978	T	G	3553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.40;MQRankSum=4.355;QD=8.95;ReadPosRankSum=-3.851;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:276,121:0.30:397
chr16	70182489	rs145754705	ACTTCCCTTCC	A	2856.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.256;QD=16.14;ReadPosRankSum=0.828;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:99,78:0.44:177
chr16	70187164	rs2287979	G	A	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	70187270	rs2287980	T	G	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:354,138:0.28:492
chr16	70190401	rs6499302	C	T	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:231,205:0.47:436
chr16	70190676	rs201167369	C	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-1.634;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:620,112:0.15:732
chr16	70191029	rs4985509	T	G	4155.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:266,219:0.45:485
chr16	70191161	rs11647087	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr16	70211226	rs150357848	T	C	1278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.54;MQRankSum=-9.775;QD=9.13;ReadPosRankSum=-5.646;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:74,66:0.47:140
chr16	70211290	rs76842247	T	C	4443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.38;MQRankSum=-14.294;QD=9.24;ReadPosRankSum=3.526;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:242,239:0.50:481
chr16	70211370	rs144090331	C	G	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.07;MQRankSum=-7.769;QD=10.84;ReadPosRankSum=1.489;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:102,51:0.33:153
chr16	70211380	rs200721332	G	A	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.19;MQRankSum=-7.634;QD=12.92;ReadPosRankSum=1.461;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:84,43:0.34:127
chr16	70219659	rs371530724	G	A	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.622;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=33.526;MLEAC=1;MLEAF=0.500;MQ=42.68;MQRankSum=-2.460;QD=10.05;ReadPosRankSum=-3.086;SOR=4.892;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr16	70219914	rs200703987	T	C	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.59;QD=30.75;SOR=5.610;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	70285901	rs4985407	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	70287177	rs4081753	A	G	13235.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr16	70292798	rs34846578	CAG	C	1179.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	70303580	rs2070203	G	A	10638.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr16	70350114	.	G	GT	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.695;QD=2.17;ReadPosRankSum=-0.083;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:103,42:0.29:145
chr16	70384687	rs66588480	CTTAAAA	C	684.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	70395387	rs1134074	C	T	8902.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr16	70400857	rs8058224	A	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	70403992	.	T	C	234.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=-0.472;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr16	70422231	rs4985526	C	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	70502610	rs12446395	C	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	70506907	rs7192865	T	C	9917.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,388:1.00:388
chr16	70514828	rs7919	A	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	70515355	rs11054	C	T	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:95,197:0.67:292
chr16	70515600	rs6416698	T	G	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr16	70516109	rs12447090	G	A	6157.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	70548297	rs3931036	G	A	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	70551490	.	CAA	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=1.144;QD=6.85;ReadPosRankSum=3.045;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr16	70564866	.	G	GT	375.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr16	70690989	rs8046424	G	C	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:48,113:0.70:161
chr16	70693462	rs141014593	G	A	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr16	70708093	rs67662127	CAGTCTCAACAGCTATAGT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.170;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.784;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr16	70713654	rs76602679	G	C	2058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.733;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=39.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-2.104;SOR=2.265;set=HC	GT:AD:AF:DP	0/1:89,140:0.61:229
chr16	70714811	.	C	CGG	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=7.696;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.241;QD=0.31;ReadPosRankSum=0.470;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:114,13:0.10:127
chr16	70726940	rs2278984	G	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr16	70732483	rs7201952	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr16	70732761	rs9673700	G	C	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr16	70818759	rs2271047	A	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr16	70834872	.	G	A	469.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr16	70917705	rs138545276	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=5.801;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=-3.440;QD=1.86;ReadPosRankSum=-1.899;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr16	70954915	rs1798531	G	T	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.60;QD=29.85;SOR=3.657;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	70989193	.	G	T	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=51.50;MQRankSum=0.504;QD=2.90;ReadPosRankSum=-1.360;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr16	70995952	rs201827020	G	A	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=12.98;ReadPosRankSum=-0.000;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr16	70996074	rs7190586	G	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=54.10;MQRankSum=-3.789;QD=1.39;ReadPosRankSum=-0.912;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr16	70996087	rs7190598	G	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.427;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-4.341;QD=1.08;ReadPosRankSum=-0.733;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr16	71015329	rs112779887	G	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.94;QD=25.90;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	71025394	rs149427312	C	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:92,88:0.49:180
chr16	71054333	.	TTG	T	114.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=46.47;MQRankSum=-1.383;QD=19.14;ReadPosRankSum=-1.383;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr16	71100838	rs74361942	T	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr16	71101433	rs139282877	G	GA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.008;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.72;MQRankSum=-2.509;QD=5.73;ReadPosRankSum=-1.065;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr16	71163693	rs150028416	A	G	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.639;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=11.858;MLEAC=1;MLEAF=0.500;MQ=49.98;MQRankSum=2.903;QD=8.19;ReadPosRankSum=-0.503;SOR=1.503;set=HC	GT:AD:AF:DP	0/1:87,61:0.41:148
chr16	71209398	rs145925047	TACC	T	4960.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=1.772;QD=11.92;ReadPosRankSum=0.080;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:276,140:0.34:416
chr16	71218926	rs3785347	T	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	71220880	rs12927616	T	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	71318577	rs3803704	T	C	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=-0.536;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,50:0.68:74
chr16	71319539	rs3826247	C	T	2634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.935;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=0.227;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:100,127:0.56:227
chr16	71319646	rs3096380	G	A	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:52,88:0.63:140
chr16	71319900	rs9928675	T	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr16	71406024	rs7203012	C	T	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:55,125:0.69:180
chr16	71408475	rs12444419	T	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr16	71408527	rs8046337	A	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:65,23:0.26:88
chr16	71411446	rs12445308	G	T	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.68;SOR=2.170;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	71416431	rs12919213	T	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	71417783	rs35885273	C	T	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-0.951;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:51,88:0.63:139
chr16	71418291	rs41280904	T	C	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.703;QD=4.93;ReadPosRankSum=-1.234;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:166,84:0.34:250
chr16	71418562	rs367842304	CCACA	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	71418572	rs111526151	A	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	71418608	rs72802013	A	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.629;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-0.351;QD=2.70;ReadPosRankSum=-1.350;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr16	71418611	.	A	AGAT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.274;QD=1.20;ReadPosRankSum=-1.369;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:30,4:0.12:34
chr16	71419595	rs4327058	A	G	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	71423487	rs34538886	C	T	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:29,111:0.79:140
chr16	71464943	rs7195767	A	G	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:42,57:0.58:99
chr16	71465613	rs7203200	T	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr16	71466088	rs4620964	A	G	23990.77	.	AC=2;AF=1.00;AN=2;DB;DP=920;set=Intersection	GT:AD:AF:DP	1/1:1,909:1.00:910
chr16	71484621	rs66920642	CA	C	822.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=1.512;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:45,68:0.60:113
chr16	71487206	rs2070832	T	C	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	71488175	rs34380814	C	T	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:80,180:0.69:260
chr16	71509588	rs2288487	G	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-1.367;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr16	71509634	rs2288488	G	C	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.188;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:83,31:0.27:114
chr16	71509685	rs2288489	C	G	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr16	71509796	rs8050871	C	G	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr16	71603912	rs172650	C	A	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	71604469	rs2303226	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr16	71606716	rs72797767	A	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.21;ReadPosRankSum=-0.490;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr16	71607384	rs2432520	T	G	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr16	71660115	rs4788820	G	C	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	71660404	rs61753635	G	A	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:71,140:0.66:211
chr16	71668800	rs7206470	G	A	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	71678679	rs7204608	G	C	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	71682796	.	T	C	24	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=2;MGOF=61;MMLQ=27;MQ=60.0;NF=3;NR=2;PP=24;QD=11.7542425094;SC=GGGGCAGTCATAGTGCTGTGT;SbPval=0.57;Source=Platypus;TC=20;TCF=13;TCR=7;TR=5;WE=71682804;WS=71682786;set=Platypus	GT:AD:AF:DP	1/0:15,5:0.25:20
chr16	71683759	rs142287063	G	A	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:178,103:0.37:281
chr16	71687002	rs11298836	CT	C	314.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=1.361;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:6,26:0.81:32
chr16	71701248	rs1423983	G	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	71703436	rs2032918	T	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	71712786	rs61733126	A	G	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-1.159;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:156,76:0.33:232
chr16	71715915	rs11439127	G	GA	81.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.37;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	71718366	rs7195059	C	T	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	71736702	rs10626314	G	GTATTTT	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	71757939	rs7201649	C	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	71772795	rs904764	G	A	1031.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.50;ReadPosRankSum=-0.155;SOR=0.591;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr16	71773190	rs904763	G	T	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.911;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:108,35:0.24:143
chr16	71784000	rs2270829	A	T	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	71790166	rs8053186	G	A	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	71792190	rs11866559	G	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr16	71792696	rs12919271	C	A	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:71,188:0.73:259
chr16	71799347	rs12149092	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	71801946	rs12149533	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr16	71801958	rs7192956	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	71804956	rs9635524	C	G	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr16	71805160	rs4788443	G	A	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	71879868	rs4788563	A	C	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	71884369	rs140112104	G	T	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:229,124:0.35:353
chr16	71901648	rs17357420	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr16	71917058	rs2288029	G	A	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	71928693	rs71386939	C	T	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-1.518;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:38,56:0.60:94
chr16	71928850	rs11075908	T	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	71950450	rs1049794	C	T	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.815;QD=2.93;ReadPosRankSum=-2.356;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr16	71955426	rs56089063	C	CAT	1935.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	71956511	rs148848854	AATGCCC	A	19423.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=836;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;MQRankSum=0.586;QD=25.13;ReadPosRankSum=-0.783;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:6,767:0.99:773
chr16	71956588	rs77712195	GTATA	G	3182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-1.261;QD=7.73;ReadPosRankSum=0.489;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:313,99:0.24:412
chr16	71958052	rs7197486	A	G	6919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=0.348;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:111,327:0.75:438
chr16	71963924	rs34029919	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr16	71967783	rs12445641	C	T	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:49,90:0.65:139
chr16	71967927	rs17358402	C	T	6238.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:176,297:0.63:473
chr16	71968091	rs12149307	A	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=0.741;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:14,45:0.76:59
chr16	71968147	rs12149325	G	C	232.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.22;ReadPosRankSum=0.253;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr16	71969497	rs11865456	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr16	71971091	rs7191848	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr16	71981374	rs8050058	T	G	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=-1.357;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:12,27:0.69:39
chr16	71981414	rs149635567	C	CTTTG	3820.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	71981630	rs9934803	T	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.42;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	71981652	rs9934812	T	G	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	71983664	rs1549292	T	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.602;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr16	71983929	rs35377660	A	T	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:63,117:0.65:180
chr16	71986764	rs11648353	G	A	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	71986946	rs7204708	A	G	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	71986995	rs12708919	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:88,44:0.33:132
chr16	71987044	rs35601686	CAA	C	1693.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr16	71987960	rs34041171	A	AC	1048.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;QD=27.60;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr16	71988106	rs9921412	C	T	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	72001110	rs9928413	G	A	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:186,73:0.28:259
chr16	72001629	rs12708922	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.597;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr16	72003732	rs28629271	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:61,21:0.26:82
chr16	72003952	rs35259348	G	C	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:93,44:0.32:137
chr16	72007399	rs9925415	C	T	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:41,96:0.70:137
chr16	72011040	rs3929023	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	72011181	rs1559401	G	T	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	72011193	rs1559400	A	C	4771.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	72011261	rs1559399	A	G	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	72011450	rs1559398	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	72011456	rs139541803	G	GGTCTTC	596.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	72012072	rs8053841	C	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	72012394	rs71153690	GTATATA	GTA,G	207.77	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=15;set=Intersection	GT:AF:DP	0/1:0.70:10
chr16	72012400	rs62053844	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.68;ReadPosRankSum=-0.105;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr16	72012402	rs62053845	A	G	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.48;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	72012404	rs62053846	A	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.48;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	72012406	rs370830204	A	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.48;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	72012408	.	A	G	273.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.38;ReadPosRankSum=0.524;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr16	72012410	rs371862331	A	G	273.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.38;ReadPosRankSum=0.524;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr16	72012412	.	A	G	273.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.38;ReadPosRankSum=0.524;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr16	72013797	rs7185272	G	C	7323.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	72018099	rs12443563	C	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	72020134	rs12708923	T	C	4648.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:116,228:0.66:344
chr16	72020294	rs4788590	G	A	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	72020323	rs4788591	A	G	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	72042825	rs3213423	T	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	72050885	rs11075914	G	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	72054984	rs1862752	G	T	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	72057282	rs2288002	A	G	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	72078043	rs763665	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr16	72088467	rs5472	A	G	2474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.619;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=31.344;MLEAC=1;MLEAF=0.500;MQ=49.71;MQRankSum=4.891;QD=19.96;ReadPosRankSum=4.662;SOR=0.008;set=HC	GT:AD:AF:DP	0/1:18,106:0.85:124
chr16	72088652	rs9927981	C	T	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:116,123:0.51:239
chr16	72088675	rs4788458	T	C	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	72092017	rs2070938	A	T	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	72110948	rs12646	C	G	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	72123992	rs7191127	G	T	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	72124157	rs7190995	A	G	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=26.13;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	72124219	rs7192730	T	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	72124495	rs2303285	A	C	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	72130203	rs1050361	C	G	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	72130815	rs1050362	C	A	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	72131740	rs34749771	ACT	A	3144.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	72132356	rs11862813	C	T	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	72132713	rs2072142	C	T	7124.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr16	72133211	rs2072141	G	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	72135014	rs1050363	T	C	11538.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr16	72135319	rs8043606	T	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	72137561	rs2240243	G	A	8597.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr16	72139184	rs2074626	C	A	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr16	72139396	rs150617	T	C	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	72139537	rs42544	T	C	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	72142038	rs36033103	G	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr16	72142072	rs8051882	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	72142895	rs9926156	G	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	72146441	rs7940	C	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	72146570	rs6680	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	72156666	rs35909200	T	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	72156842	rs16973716	T	G	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:37,66:0.64:103
chr16	72157000	rs12935266	C	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	72157384	rs4788606	T	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.636;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=5.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-1.818;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:61,18:0.23:79
chr16	72158920	rs3812987	C	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr16	72158950	rs3812986	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	72162855	rs6499562	G	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr16	72827758	rs699444	T	C	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	72832135	rs740178	T	A	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	72832618	.	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=1.921;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr16	72993831	rs7193297	A	C	2806.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:57,124:0.69:181
chr16	72993860	rs62639999	G	A	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:144,75:0.34:219
chr16	73126858	rs7189194	T	G	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	73521307	rs35394633	A	ATT	392.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=0.040;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr16	74320977	.	C	CA	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.550;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:179,41:0.19:220
chr16	74333380	rs889641	T	C	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=0.492;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:84,44:0.34:128
chr16	74366531	rs3743922	A	C	2067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.084;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=1.969;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-4.153;QD=4.14;ReadPosRankSum=1.196;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:356,143:0.29:499
chr16	74366672	rs3743923	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-3.414;QD=5.69;ReadPosRankSum=0.401;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr16	74366694	.	A	G	44.77	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr16	74372596	.	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-2.267;QD=0.48;ReadPosRankSum=0.056;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:154,31:0.17:185
chr16	74376087	.	C	T	1639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=46.75;MQRankSum=-1.465;QD=17.08;ReadPosRankSum=-0.606;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:22,74:0.77:96
chr16	74376140	rs150563770	T	C	2271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=49.92;MQRankSum=-1.775;QD=15.56;ReadPosRankSum=-0.297;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:38,108:0.74:146
chr16	74382969	rs144852560	G	T	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=44.14;MQRankSum=0.605;QD=18.41;ReadPosRankSum=-0.264;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr16	74384296	rs11859725	C	T	1389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=2.069;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-0.389;QD=4.47;ReadPosRankSum=1.628;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:218,93:0.30:311
chr16	74384319	rs113276760	G	GT	2069.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=0.045;QD=8.28;ReadPosRankSum=0.078;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:173,77:0.31:250
chr16	74394425	rs3852692	A	G	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr16	74394671	rs62055171	T	C	1911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=2.719;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-1.868;QD=4.50;ReadPosRankSum=-2.477;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:298,127:0.30:425
chr16	74394745	rs71391080	A	G	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:90,137:0.60:227
chr16	74425548	rs2868591	A	G	5664.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:382,183:0.32:565
chr16	74425569	rs11641596	C	T	5116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.959;QD=10.34;ReadPosRankSum=0.435;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:340,155:0.31:495
chr16	74443401	.	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.63;QD=30.72;SOR=7.223;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	74443433	.	C	G	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=45.75;MQRankSum=-1.021;QD=8.20;ReadPosRankSum=-0.533;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:77,44:0.36:121
chr16	74443542	rs146555914	G	C	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=1410;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=52.36;MQRankSum=-0.104;QD=1.24;ReadPosRankSum=-2.647;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:1176,234:0.17:1410
chr16	74490789	rs12446054	G	A	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr16	74493752	rs71158515	C	CT	594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-0.026;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:50,44:0.47:94
chr16	74496162	.	G	GA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.138;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:118,22:0.16:140
chr16	74501856	rs6564117	C	G	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=2.865;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr16	74503860	rs2303278	T	A	4036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-0.566;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:102,191:0.65:293
chr16	74504005	rs2303279	T	C	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:40,115:0.74:155
chr16	74504097	rs12716764	G	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	74505291	.	CA	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.415;QD=3.82;ReadPosRankSum=0.852;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr16	74519807	rs76382044	T	C	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=2.085;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:160,69:0.30:229
chr16	74530611	rs34221253	T	TACAC	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.12;ReadPosRankSum=0.126;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr16	74537591	rs4887772	C	T	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.626;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:227,80:0.26:307
chr16	74566092	rs202047611	ATAT	A	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=-0.000;QD=10.41;ReadPosRankSum=1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr16	74641137	.	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.450;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=5.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=1.668;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr16	74660185	rs78219119	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr16	74662597	rs11149759	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.768;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr16	74664969	rs7193959	T	A	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr16	74666634	rs4072450	G	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.263;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr16	74694731	rs79470274	C	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=-1.628;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr16	74695079	rs8058922	G	T	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.749;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:253,98:0.28:351
chr16	74706349	rs9783779	T	C	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.646;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:113,45:0.28:158
chr16	74709206	rs11862413	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.444;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr16	74712905	rs6564158	A	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr16	74729655	rs33972728	T	C	2045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=-1.623;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:33,96:0.74:129
chr16	74750405	rs2301865	G	A	10094.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr16	74753079	rs2074629	C	T	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:23,71:0.76:94
chr16	74760292	rs11295057	CT	C	689.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr16	74908439	rs2870148	C	T	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	74920374	rs4888305	C	T	97.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	74922015	rs35324656	CA	C	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.892;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=0.000;QD=7.18;ReadPosRankSum=1.485;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:16,53:0.77:69
chr16	74937828	rs9930270	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=-1.465;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	74938083	rs9930498	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr16	74943867	rs113238843	G	GT	1020.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.589;QD=11.34;ReadPosRankSum=-1.280;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:19,71:0.79:90
chr16	74943890	rs12325318	A	G	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	74951706	rs148023114	CAA	C	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=0.940;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr16	74990264	.	T	C	350.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr16	75034133	rs6564195	A	G	6728.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	75034214	rs34462287	C	A	2324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-2.121;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:315,146:0.32:461
chr16	75138927	rs2287989	A	G	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr16	75146711	rs34195333	C	G	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:351,173:0.33:524
chr16	75148604	rs755099	G	A	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	75186727	rs11859007	G	A	4939.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	75200378	rs9929570	T	C	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	75200407	rs11865310	G	C	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=45.36;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	75200416	rs7200789	T	C	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=41.91;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	75200595	rs71380707	CAT	C	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.75;ReadPosRankSum=1.445;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr16	75202998	rs12716783	A	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	75238103	rs4737	C	T	10912.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.50;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr16	75240935	rs57900557	G	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr16	75263974	rs6564241	T	C	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	75267676	rs4888361	A	G	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	75267956	rs58383536	C	A	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr16	75269267	rs3169330	A	G	12084.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr16	75269477	rs61729595	A	C	6387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.448;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=2.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.60;ReadPosRankSum=-1.171;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:74,289:0.80:363
chr16	75276295	rs7195938	A	G	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	75276775	rs1035539	G	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.68;QD=25.65;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	75277344	rs4888363	A	T	6064.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	75281964	rs1862737	A	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=1.630;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:183,68:0.27:251
chr16	75285164	rs1862738	A	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	75300708	rs11149811	C	G	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	75327700	rs6625	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	75327916	rs6624	A	G	8076.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr16	75338855	rs3743607	C	T	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.234;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:106,47:0.31:153
chr16	75339131	rs7192981	T	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	75445675	rs1109342	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-1.886;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr16	75445691	.	G	C	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-2.337;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr16	75445906	rs247435	C	T	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	75448273	rs8056236	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.68;ReadPosRankSum=-0.108;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	75448659	rs8051407	A	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.190;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr16	75467076	rs3833048	G	GC	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr16	75498252	rs150429885	C	CT	1376.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:88,40:0.31:128
chr16	75498253	rs34904236	G	T	1385.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:88,40:0.31:128
chr16	75670529	.	A	AT	314.73	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr16	75675609	rs5030748	T	C	4310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=-2.781;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:82,201:0.71:283
chr16	75688046	.	TAAA	T	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-0.000;QD=5.08;ReadPosRankSum=2.189;SOR=3.241;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr16	75703213	rs199883674	T	TA	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.582;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:51,37:0.42:88
chr16	75730037	rs5817959	T	TA	777.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr16	75794738	rs7205764	T	C	8757.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.90;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	76311602	rs59314262	G	GT	6413.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	76389498	rs17699131	A	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr16	76389542	rs17699142	A	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-1.471;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr16	76461273	rs7192076	A	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,9:0.22:41
chr16	76461519	rs9927638	C	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.115;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:106,35:0.25:141
chr16	76461588	rs9938200	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr16	76486581	rs28584228	A	G	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	76496025	rs57292037	A	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr16	76501542	rs1002974	A	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	76523792	rs7201030	A	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr16	76532392	rs12932943	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.285;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=1.208;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr16	76532583	rs12933808	A	G	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr16	76555015	rs11353699	CT	C	2406.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.601;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.10;ReadPosRankSum=2.292;SOR=0.218;set=HC	GT:AD:AF:DP	1/1:3,130:0.98:133
chr16	76569754	rs6564348	A	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	76587647	rs4243123	G	C	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	76902722	rs34106659	C	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.886;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr16	76902847	rs7500280	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=1.012;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,3:0.13:23
chr16	76902850	rs7499278	G	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-1.038;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:19,3:0.14:22
chr16	77225217	rs3214483	A	AG	491.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr16	77228629	rs2232503	A	G	11985.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr16	77228866	rs2232504	T	C	12559.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=-0.014;SOR=0.412;set=HC	GT:AD:AF:DP	1/1:3,495:0.99:498
chr16	77228971	rs2232506	C	T	3765.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:85,176:0.67:261
chr16	77229657	rs2303259	C	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:22,62:0.74:84
chr16	77233394	rs4888607	A	G	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	77240217	rs9928151	G	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	77240623	rs72798552	C	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr16	77242035	rs9933799	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	77242083	rs9934426	C	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.87;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	77242233	rs68164273	A	G	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr16	77242284	rs1424146	G	A	5623.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	77242513	rs2343035	C	T	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	77245239	rs746036	C	T	5263.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:133,251:0.65:384
chr16	77245971	rs9924848	G	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr16	77246795	rs2278049	C	G	8233.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr16	77246847	rs2278048	T	G	15134.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,590:1.00:590
chr16	77246953	rs2278047	G	C	8391.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr16	77246988	rs7203616	T	G	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	77323093	rs68045879	A	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.766;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr16	77323235	rs3743749	C	G	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.782;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:161,59:0.27:220
chr16	77325325	rs35478105	G	T	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:114,56:0.33:170
chr16	77327018	rs35296483	G	A	2709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.389;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:96,132:0.58:228
chr16	77327211	rs67517591	T	TA	708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.118;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=2.452;QD=9.71;ReadPosRankSum=0.451;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:32,41:0.56:73
chr16	77327226	rs4888618	C	A	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	77328895	rs12935229	C	T	4504.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:74,210:0.74:284
chr16	77328990	rs12935394	C	A	3547.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:66,167:0.72:233
chr16	77353973	rs9930984	G	T	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:38,78:0.67:116
chr16	77355179	rs77699980	C	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr16	77356115	rs74643232	G	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr16	77359919	rs11640912	A	T	3630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-0.552;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:89,174:0.66:263
chr16	77360019	rs62044892	G	T	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.952;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr16	77389956	rs8059275	A	G	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	77393207	rs2650907	G	C	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	77393449	rs202197230	A	C	50.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=1.608;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr16	77393450	rs114891228	A	C	75.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.570;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr16	77395948	rs1909802	C	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	77396290	rs7192938	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr16	77397899	rs1948718	T	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr16	77398081	rs1948719	T	C	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:100,61:0.38:161
chr16	77398386	rs2562119	A	T	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	77401684	rs2434895	T	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr16	77465036	rs1366545	C	G	252.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	77756613	rs2914456	G	A	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	77769277	rs117306778	G	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr16	77769288	rs6564469	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr16	77769369	rs308926	C	T	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	77769647	rs186305	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	77775459	rs11648791	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.931;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:75,24:0.24:99
chr16	77850966	rs2966053	T	C	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:48,104:0.68:152
chr16	77850999	rs2966052	A	G	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr16	77918801	rs1864228	T	C	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	78062159	rs2075738	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:82,30:0.27:112
chr16	78062190	rs2735403	T	C	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	78062219	rs2204891	C	T	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	78063000	rs7197560	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.846;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr16	78063064	rs7190832	G	T	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-1.356;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:106,50:0.32:156
chr16	78063143	rs7192416	C	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.028;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:82,42:0.34:124
chr16	78085754	rs2344923	C	A	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.75;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	78142209	rs4887937	T	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	78143607	rs2287972	C	T	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:137,55:0.29:192
chr16	78148794	rs1469117	T	G	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	78149173	rs7203387	A	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr16	78198192	rs2303191	T	C	9099.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr16	78312497	rs8050128	C	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=1.725;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:55,25:0.31:80
chr16	78420775	rs11545029	G	A	7729.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	78790765	rs7199110	C	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	79245465	rs384216	T	C	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr16	79245820	rs383362	G	T	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:48,100:0.68:148
chr16	79245956	rs2288034	C	G	1787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.873;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.92;ReadPosRankSum=-2.251;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:31,47:0.60:78
chr16	79245961	rs2288033	T	C	1765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.23;ReadPosRankSum=-1.678;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:30,46:0.61:76
chr16	79246078	rs2288032	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr16	79619727	rs371612102	GAA	G,GA	618.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;QD=19.34;SOR=1.220;set=HC	GT:AD:AF:DP	1/2:0,22,10:0.69,0.31:32
chr16	79628536	rs66467731	AT	A	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.654;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr16	79633805	rs5818251	TGCC	T	7903.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=44.40;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	79998075	rs66539665	T	G	1918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.44;ReadPosRankSum=0.372;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:24,86:0.78:110
chr16	80574886	rs9922406	T	C	7383.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	80577098	rs8049769	G	T	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	80581547	rs6564762	C	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-1.218;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr16	80581580	rs6564763	A	C	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:92,57:0.38:149
chr16	80581631	rs6564764	G	A	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	80582867	rs9937217	G	T	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:103,153:0.60:256
chr16	80583497	rs11866734	C	T	5866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-1.748;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:113,277:0.71:390
chr16	80584342	rs8182107	A	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	80654526	rs4888101	T	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr16	80654633	rs4889169	G	A	2677.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:71,127:0.64:198
chr16	80666886	rs59675671	T	C	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr16	80704886	rs7195952	T	C	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.214;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:70,42:0.38:112
chr16	80718879	rs8049284	A	G	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.670;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:201,60:0.23:261
chr16	80719086	rs8047798	G	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr16	81010073	rs1127390	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.237;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr16	81012303	rs9937731	C	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:61,17:0.22:78
chr16	81012307	rs59299004	TG	T	308.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:64,16:0.20:80
chr16	81015560	rs2549822	C	T	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	81022203	rs34522854	TA	T	1179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=-1.816;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:21,65:0.76:86
chr16	81022232	rs2549833	T	C	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=0.715;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:17,43:0.72:60
chr16	81025372	rs2244452	A	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.17;ReadPosRankSum=1.264;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr16	81025490	rs2113196	A	C	1976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=0.701;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:62,97:0.61:159
chr16	81025506	rs2113197	T	A	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:60,107:0.64:167
chr16	81050817	rs9889194	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.38;ReadPosRankSum=-1.210;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr16	81050965	rs935939	A	T	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	81051203	rs11866803	T	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.429;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr16	81051327	rs935940	C	T	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	81053682	rs10602593	CT	C	278.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr16	81056111	rs9921914	C	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.954;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr16	81061827	rs2549887	G	A	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:61,139:0.69:200
chr16	81062030	rs2549888	G	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr16	81062151	rs35608064	CTT	C	5485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.545;QD=27.71;ReadPosRankSum=-0.779;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:63,135:0.68:198
chr16	81062157	rs114305409	T	C	5602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.710;QD=27.07;ReadPosRankSum=-0.447;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:68,139:0.67:207
chr16	81062171	rs2602428	C	T	6268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.711;QD=24.11;ReadPosRankSum=0.151;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:86,174:0.67:260
chr16	81069449	rs2602430	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.28;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	81069691	rs200817365	G	C	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-2.040;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:138,36:0.21:174
chr16	81077915	rs2257378	T	C	4384.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:93,204:0.69:297
chr16	81094760	rs804884	A	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	81095091	rs7198494	A	G	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:270,112:0.29:382
chr16	81095363	rs804885	C	T	6699.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr16	81118289	rs7187102	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.55;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	81118316	rs56359310	CTT	C	78.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.25;ReadPosRankSum=-0.366;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	81121145	rs7200400	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	81121353	rs8177906	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.330;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr16	81129822	rs8052579	G	A	314.89	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr16	81142257	rs1869348	T	C	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:208,96:0.32:304
chr16	81142358	rs4520846	C	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr16	81145630	rs8053975	C	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	81145664	rs8054611	A	G	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	81145675	rs8059153	T	C	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	81145737	rs8059318	T	G	8838.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr16	81145807	rs8054182	C	G	10060.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr16	81151122	rs4889238	A	C	19357.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,737:1.00:737
chr16	81151163	rs8053191	C	T	2371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.301;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=0.446;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:366,150:0.29:516
chr16	81157324	rs4889241	G	A	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	81157521	rs4889242	G	A	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	81164274	rs11150345	C	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	81167342	rs11150346	T	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	81173030	rs4889243	A	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	81173136	rs12918619	T	C	5119.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	81173193	rs4889244	C	T	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	81180988	rs7194136	C	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:146,78:0.35:224
chr16	81183266	rs8044870	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	81183624	rs10617579	CTT	C	346.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.25;ReadPosRankSum=0.126;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:3,16:0.84:19
chr16	81185326	rs11649028	G	A	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	81185416	rs8061038	A	G	6538.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr16	81190294	rs4889251	G	A	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=43.22;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	81190308	rs4889252	G	T	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=47.92;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	81190328	rs4889253	G	A	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;MQ=59.78;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	81190601	rs1453325	T	C	6069.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr16	81190613	rs1453324	A	G	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	81190708	rs1453323	A	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	81193156	rs10871403	C	G	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	81193321	rs72628271	C	T	10845.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr16	81194382	rs2317117	T	C	8845.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr16	81197117	rs4889255	A	G	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	81198441	rs7191852	T	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	81201475	.	G	A	881.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr16	81204188	rs1901819	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	81208056	rs745209	A	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	81209207	rs2317114	T	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr16	81209234	rs935933	C	T	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr16	81213081	rs4889259	G	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	81213142	rs4889260	C	T	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	81213378	rs4889261	A	G	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	81213422	rs4889262	C	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	81219329	rs9319563	G	T	12673.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:1,499:1.00:500
chr16	81219396	rs9674042	T	A	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	81222447	.	CAA	C	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=1.054;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr16	81222672	rs4889271	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	81224234	rs12716909	T	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	81224423	rs11647179	G	A	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	81232275	rs7205673	G	A	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	81232564	rs7194871	T	G	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	81240931	rs11150368	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	81241098	rs11150369	C	T	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	81241249	rs72831349	T	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	81241269	rs4077826	G	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	81241965	rs72831353	T	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	81242194	rs6564838	T	C	8610.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	81242198	rs7499011	G	A	8612.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	81242366	rs6564839	T	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	81242386	rs6564840	T	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	81249927	rs7185774	C	T	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr16	81249954	rs7191351	T	A	6604.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	81253759	rs9924371	A	G	8110.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr16	81253917	rs9924530	A	G	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	81272625	.	A	AT	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-0.088;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr16	81314496	rs7501331	C	T	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:52,85:0.62:137
chr16	81320830	rs8048342	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	81396287	rs12448327	C	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:239,84:0.26:323
chr16	81398520	rs4889313	G	A	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:70,137:0.66:207
chr16	81398635	rs2608555	C	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=1.518;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:51,35:0.41:86
chr16	81508244	rs80154255	T	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr16	81641452	rs7203914	A	G	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	81679151	rs4889356	A	G	8109.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:155,385:0.71:540
chr16	81703902	rs9921880	G	T	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	81712240	rs74910737	G	GC	1809.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:22,74:0.77:96
chr16	81726584	rs11642818	A	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr16	81726863	rs2288011	C	G	7069.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:144,328:0.69:472
chr16	81730381	rs9933631	C	A	3939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=1.010;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:84,187:0.69:271
chr16	81739376	rs3968320	T	A	208.78	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr16	81739404	rs9936604	T	C	144.41	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr16	81740829	rs67721827	T	C	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:30,98:0.77:128
chr16	81743328	rs68116357	A	G	5158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=1.480;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:139,249:0.64:388
chr16	81816787	rs4476171	T	A	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	81816818	rs72834729	C	T	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	81819768	rs1143685	T	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.736;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:61,25:0.29:86
chr16	81819820	rs4294811	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.076;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr16	81887903	rs4072831	A	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.725;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr16	81887938	rs4522412	T	C	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.000;QD=4.09;ReadPosRankSum=1.394;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr16	81887957	rs4072830	A	C	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=4.43;ReadPosRankSum=0.041;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr16	81888152	rs1143686	A	G	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=0.810;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:91,40:0.31:131
chr16	81888237	rs4072828	G	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.428;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr16	81891998	rs4341734	G	C	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	81892041	rs5818357	GGGA	G	2937.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:24,72:0.75:96
chr16	81892043	rs67392656	GAAAA	G	684.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:73,23:0.24:96
chr16	81892048	rs5016604	A	C	2946.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.209;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.025;QD=30.70;ReadPosRankSum=-1.731;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:24,72:0.75:96
chr16	81892708	rs4888183	T	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-0.704;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr16	81892895	rs41309272	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,24:0.30:81
chr16	81892913	rs12596639	C	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr16	81902797	rs12445580	A	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:172,72:0.30:244
chr16	81903055	rs4889420	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.076;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr16	81904433	rs34761601	TG	T	87.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr16	81904447	rs62046684	A	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.776;QD=8.86;ReadPosRankSum=-0.568;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr16	81914619	rs41305761	A	C	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:32,66:0.67:98
chr16	81917099	rs6564928	G	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr16	81922781	rs45443101	A	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:140,67:0.32:207
chr16	81929488	rs1143688	C	T	2052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.938;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:353,137:0.28:490
chr16	81931362	rs8053636	T	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr16	81931403	rs8049305	A	G	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=0.666;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr16	81939150	rs4435248	G	C	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	81941319	rs1143689	C	T	4804.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.90;ReadPosRankSum=0.772;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:2,191:0.99:193
chr16	81941444	rs71400183	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr16	81946423	rs4243222	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr16	81946471	rs4243223	G	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr16	81953081	rs12448130	T	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	81953368	rs12448152	A	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	81954789	rs12446127	C	G	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=2.132;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:159,52:0.25:211
chr16	81954996	.	A	AT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.551;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr16	81956927	rs4485360	C	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	81962071	rs4366702	A	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr16	81964977	rs7187863	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr16	81971403	rs1071644	T	C	1460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=2.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-0.945;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:149,85:0.36:234
chr16	81973474	rs4405546	C	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	81973805	rs12923387	A	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.12;ReadPosRankSum=1.459;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr16	81973807	rs141767011	G	GTGCA	457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.52;ReadPosRankSum=1.460;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr16	82124776	rs2955154	G	T	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	82182286	rs3751863	C	G	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:37,84:0.69:121
chr16	82182354	rs3751865	G	A	3991.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:99,188:0.66:287
chr16	82182568	rs16956524	C	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr16	82182832	rs11859599	C	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	82182866	rs16956533	C	T	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:46,88:0.66:134
chr16	82183136	rs140235657	ACT	A	358.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr16	82183144	rs74398860	T	A	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr16	82184793	rs16956556	T	C	115.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.45;ReadPosRankSum=1.465;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	82184973	rs2303268	A	G	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=1.423;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:20,40:0.67:60
chr16	82203705	rs2303265	A	C	10057.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.33;ReadPosRankSum=-0.649;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:2,395:0.99:397
chr16	82203711	rs2303264	G	T	18742.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr16	82203742	rs1134847	T	C	25586.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr16	82203758	rs2303262	C	T	26170.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=45.20;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr16	82203768	rs2303261	G	T	24783.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=45.47;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,545:1.00:545
chr16	82672920	rs12444222	G	A	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,87:0.60:146
chr16	82673047	rs4782724	C	T	10363.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr16	82752901	rs141453561	G	A	425.78	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr16	82882118	rs1585533	A	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr16	82882188	rs13336316	G	T	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=2.372;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:84,74:0.47:158
chr16	82882283	rs9935254	C	G	8758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-0.266;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:202,414:0.67:616
chr16	82917768	rs929847	G	C	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:26,68:0.72:94
chr16	82917852	rs929848	T	C	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:77,151:0.66:228
chr16	83159350	rs7196370	A	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr16	83205290	rs56165681	G	T	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	83214480	rs7188594	C	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	83542061	rs4782540	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr16	83658857	rs17760896	C	G	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr16	83753815	rs72797298	T	C	8750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=3.428;QD=15.85;ReadPosRankSum=-0.235;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:142,410:0.74:552
chr16	83753910	rs142886033	TCATGCACACA	T	9062.73	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:66,231:0.78:297
chr16	83774854	rs12934964	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.11;ReadPosRankSum=-0.000;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	83775083	rs12935436	A	G	383.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-0.471;QD=29.50;ReadPosRankSum=-0.496;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr16	83775093	rs138398661	G	GTATA,GTGTA	268.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=14;set=Intersection	GT:AF:DP	0/1:0.69:13
chr16	83781919	rs889490	T	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr16	83816828	rs153654	A	G	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	83817019	rs1048612	A	G	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	83842792	rs8053753	G	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr16	83873259	rs435383	G	A	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	83873285	rs435367	G	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	83873300	rs146203605	T	TTG	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-2.224;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr16	83873312	rs367415	C	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.91;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	83886468	rs150603407	GTGCACACA	G	9770.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	83933296	rs446036	T	C	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	83940494	rs3815805	C	T	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=-0.627;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:25,67:0.73:92
chr16	83982460	rs4782863	A	G	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	83982960	rs4782864	C	T	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	83983071	rs4782865	C	T	7841.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=3.396;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=1.700;SOR=0.515;set=HC	GT:AD:AF:DP	1/1:1,305:1.00:306
chr16	83983755	rs2245008	G	A	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	83983775	rs12933677	T	C	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	83983865	.	C	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-1.521;QD=5.37;ReadPosRankSum=0.941;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr16	83983867	rs2457543	C	T	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr16	83984576	.	T	C	1054	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=20;MMLQ=23;MQ=44.81;NF=40;NR=10;PP=1054;QD=21.7754242509;SC=ACATACATACTGGCACACACG;SbPval=0.88;Source=Platypus;TC=74;TCF=53;TCR=21;TR=50;WE=83984587;WS=83984564;set=Platypus	GT:AD:AF:DP	1/0:24,50:0.68:74
chr16	83984578	.	GCA	G	2030	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9999;HP=1;HapScore=1;MGOF=20;MMLQ=23;MQ=46.81;NF=32;NR=15;PP=2030;QD=43.7021276596;SC=ATACATACTGGCACACACGTA;SbPval=0.82;Source=Platypus;TC=56;TCF=34;TCR=22;TR=47;WE=83984587;WS=83984564;set=Platypus	GT:AD:AF:DP	1/1:9,47:0.84:56
chr16	83984706	rs147293432	CCT	C	1303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.14;ReadPosRankSum=1.961;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:338,77:0.19:415
chr16	83984776	rs28555129	A	C	10472.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr16	83984844	rs2244899	A	C	6212.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	83984850	rs2244898	C	G	5955.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.81;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	83986885	rs7203516	C	G	23953.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,538:1.00:538
chr16	83986888	rs7203864	G	A	13680.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=1.482;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:2,537:1.00:539
chr16	83992785	rs2665296	G	A	10272.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr16	83994569	rs2136662	G	T	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	83999653	rs77204347	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	84027215	.	G	A	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.778;QD=12.85;ReadPosRankSum=1.773;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:27,48:0.64:75
chr16	84027225	.	C	CTG	213.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.667;QD=10.69;ReadPosRankSum=-1.228;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr16	84035531	rs2271300	A	G	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:63,153:0.71:216
chr16	84035594	rs2271302	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr16	84046412	rs11149615	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.25;ReadPosRankSum=-1.068;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	84046432	rs11864037	A	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr16	84046499	rs11864095	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr16	84046715	rs11864146	A	G	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.550;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:19,42:0.69:61
chr16	84050037	rs12929392	G	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr16	84063320	rs143276186	A	AAGGAAG	1406.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr16	84065710	rs907043	A	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	84075563	rs1105355	C	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.480;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.877;QD=6.51;ReadPosRankSum=1.063;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr16	84088026	rs2280026	T	C	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=1.442;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:180,72:0.29:252
chr16	84088047	rs11607	C	T	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:84,181:0.68:265
chr16	84088267	rs17849045	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr16	84088968	rs8053890	T	C	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:47,82:0.64:129
chr16	84089207	rs6563996	G	T	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:28,75:0.73:103
chr16	84089536	rs11415464	T	TG	131.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	84089767	rs17849043	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr16	84093062	rs2280024	G	A	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:36,109:0.75:145
chr16	84093152	rs2280023	T	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr16	84094450	rs71920773	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=5.746;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.915;QD=0.75;ReadPosRankSum=0.426;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr16	84101240	rs3835163	C	CACATTTT	1586.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr16	84101875	rs3817151	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr16	84102135	rs870584	G	C	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-1.547;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:61,81:0.57:142
chr16	84104478	rs1980011	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	84115279	rs3826139	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr16	84115483	rs3743631	G	A	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr16	84115561	rs3743632	G	A	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:53,95:0.64:148
chr16	84115610	rs3743633	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr16	84121078	rs5818481	CA	C	880.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.988;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=6.578;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.628;QD=6.43;ReadPosRankSum=1.121;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:57,80:0.58:137
chr16	84124602	rs8045891	G	A	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.644;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.730;QD=19.78;ReadPosRankSum=3.754;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:20,55:0.73:75
chr16	84124604	rs11325729	CA	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.210;QD=2.86;ReadPosRankSum=3.289;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:31,21:0.40:52
chr16	84125270	rs8050801	A	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:124,58:0.32:182
chr16	84132533	rs4782584	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr16	84132628	rs10690442	G	GAC	8911.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	84135493	rs907045	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	84203612	rs17856705	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:35,78:0.69:113
chr16	84203939	rs11644164	C	T	17792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=1207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.363;QD=14.80;ReadPosRankSum=1.591;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:381,821:0.68:1202
chr16	84204043	rs4578631	T	A	12782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=893;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=-1.381;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:254,590:0.70:844
chr16	84205726	rs12926474	G	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-0.948;QD=14.85;ReadPosRankSum=1.702;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr16	84208335	rs3826151	G	T	7357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.813;QD=13.88;ReadPosRankSum=1.857;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:178,352:0.66:530
chr16	84208442	rs67628212	T	C	3445.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:72,158:0.69:230
chr16	84208446	rs111554344	AT	A	9270.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	84208495	rs62049864	T	C	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr16	84209498	rs4782899	T	C	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:30,102:0.77:132
chr16	84209634	rs2288019	C	G	7952.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr16	84209738	rs2288020	T	C	5459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=0.365;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:85,255:0.75:340
chr16	84209816	rs2288022	T	C	6891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=-0.241;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:149,326:0.69:475
chr16	84209864	rs2288023	G	C	3951.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:109,187:0.63:296
chr16	84211483	rs8692	C	T	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	84211788	rs1056612	G	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.509;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:46,10:0.18:56
chr16	84211969	rs3208968	A	C	5481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=1.433;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:102,252:0.71:354
chr16	84212571	rs1804500	C	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:27,53:0.66:80
chr16	84212779	rs2230131	G	A	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.217;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:175,73:0.29:248
chr16	84212928	rs3743642	G	A	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:222,105:0.32:327
chr16	84213114	rs2230130	C	T	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:58,149:0.72:207
chr16	84213434	rs2230129	A	T	7922.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:141,365:0.72:506
chr16	84213541	rs3217259	A	AC	13373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.416;QD=19.33;ReadPosRankSum=2.989;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:230,462:0.67:692
chr16	84213748	rs2278042	C	T	5937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-2.089;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:145,278:0.66:423
chr16	84213876	rs4150164	C	T	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.124;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:185,69:0.27:254
chr16	84213965	rs2278043	G	A	4981.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr16	84214837	rs2303234	G	C	14532.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:2,553:1.00:555
chr16	84215133	rs4150149	C	T	7214.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:127,331:0.72:458
chr16	84215314	rs3815814	T	C	23904.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,920:1.00:920
chr16	84215390	rs2230127	T	C	14297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=923;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=0.166;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:239,677:0.74:916
chr16	84215692	rs2303237	C	T	12093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=885;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=-0.527;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:307,572:0.65:879
chr16	84216585	rs4150139	T	C	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:130,56:0.30:186
chr16	84216606	rs4150138	C	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:221,92:0.29:313
chr16	84217062	rs4782591	C	T	11565.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr16	84224805	rs8044351	G	C	1669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=1.571;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:30,76:0.72:106
chr16	84224967	rs8044695	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr16	84225327	rs8049081	C	G	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:42,76:0.64:118
chr16	84228237	rs11646787	A	C	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:42,103:0.71:145
chr16	84228279	rs35446963	G	A	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:18,55:0.75:73
chr16	84228612	rs35353940	CT	C	15941.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.219;QD=21.06;ReadPosRankSum=1.650;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:250,507:0.67:757
chr16	84229436	rs62049905	G	A	4171.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:101,193:0.66:294
chr16	84229559	rs2303238	T	C	3502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.852;QD=11.79;ReadPosRankSum=-0.353;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:126,171:0.58:297
chr16	84229580	rs2303239	C	T	3443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-0.601;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:114,164:0.59:278
chr16	84271158	rs3803640	C	A	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:170,73:0.30:243
chr16	84328494	rs400345	C	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr16	84328752	rs369797	G	T	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.01;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	84328756	rs401782	G	C	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.47;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	84328826	rs429725	A	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	84357925	rs244786	G	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.83;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	84358121	rs244787	A	C	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.15;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	84402133	rs13330390	G	T	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=0.562;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr16	84402275	rs62048787	G	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:100,59:0.37:159
chr16	84402381	rs72804627	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr16	84402417	rs72804628	T	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.650;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr16	84431973	rs12148971	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr16	84438512	rs11149650	G	A	5504.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	84441989	rs9935544	C	T	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.119;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:397,106:0.21:503
chr16	84444113	rs2291006	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr16	84444349	rs247818	A	C	5623.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	84449024	rs3743649	G	A	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-0.039;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:104,20:0.16:124
chr16	84449032	rs3743650	G	T	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.843;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:115,23:0.17:138
chr16	84449206	rs3826145	T	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:58,20:0.26:78
chr16	84456642	rs247814	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	84456705	rs185063	C	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr16	84472972	rs247905	G	A	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:36,69:0.66:105
chr16	84473137	rs247904	G	C	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr16	84473195	rs247903	T	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr16	84481995	rs247891	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	84485573	rs247885	C	A	6840.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:3,266:0.99:269
chr16	84486700	rs193704	G	A	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	84486867	rs2435172	A	G	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr16	84487056	rs247884	C	T	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	84488676	rs113623854	A	AG,AGG	2801.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=109;set=Intersection	GT:AF:DP	1/2:0.29,0.67:94
chr16	84488754	rs247882	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	84492683	rs693552	A	C	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	84493081	rs437299	G	A	7475.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	84493144	rs410388	C	G	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	84493216	rs377261	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	84494020	rs393515	G	T	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	84494450	rs381467	G	A	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	84495224	rs369750	A	G	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	84497169	rs891258	G	A	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	84513463	rs899250	T	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	84514341	rs444170	A	G	1438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.537;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:204,92:0.31:296
chr16	84516309	rs433293	G	A	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.668;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:302,118:0.28:420
chr16	84520223	rs431629	A	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr16	84520325	rs431389	T	C	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:206,91:0.31:297
chr16	84520396	rs422145	A	G	7156.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	84520537	rs431818	T	C	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	84520780	rs378384	G	C	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	84522867	rs422918	C	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,25:0.34:74
chr16	84522897	rs436278	G	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:83,35:0.30:118
chr16	84528235	rs62050761	T	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr16	84528293	rs2082037	C	T	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.126;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:24,48:0.67:72
chr16	84528317	rs2435171	G	C	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	84531780	rs501782	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr16	84600347	rs247860	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	84600595	rs12929880	T	C	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	84774022	rs12448489	G	A	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	84774120	rs4510001	T	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	84778222	rs3751759	G	A	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	84778762	rs4553618	C	T	12414.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr16	84779248	rs7185949	T	G	5634.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	84792371	rs71386866	C	G	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.542;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:244,101:0.29:345
chr16	84793261	rs3764333	A	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	84796603	rs12932018	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	84796864	rs35594082	A	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	84797631	.	CT	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.778;QD=1.22;ReadPosRankSum=0.023;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr16	84808824	rs774298	C	G	4606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-0.768;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:105,215:0.67:320
chr16	84808900	rs774299	G	A	5083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=0.003;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:119,244:0.67:363
chr16	84808969	rs2303232	G	C	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:36,71:0.66:107
chr16	84808984	rs774300	T	C	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr16	84872051	rs1546124	G	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	84872420	.	C	A	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.170;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr16	84879286	rs12931881	G	A	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:41,90:0.69:131
chr16	84879324	rs12051168	T	C	4529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.435;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:87,214:0.71:301
chr16	84879464	rs12051468	A	G	4844.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:95,228:0.71:323
chr16	84882911	rs4783086	T	C	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	84882974	rs4783087	C	A	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	84883102	rs8061351	C	T	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	84883195	rs140532417	A	ATTG	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	84884072	rs4782673	T	G	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	84884116	rs4783090	A	G	6836.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	84888295	rs4782674	C	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	84888310	rs4782675	C	T	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr16	84888519	rs72337724	TAAAG	T	9855.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr16	84888541	rs2646127	T	C	4574.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	84888597	rs2646126	C	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	84900472	rs72799566	T	C	3208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=0.807;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:58,142:0.71:200
chr16	84902353	rs4782676	G	A	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.010;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:211,55:0.21:266
chr16	84902483	rs72799568	A	T	5155.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:136,248:0.65:384
chr16	84907499	rs11298434	GT	G	1501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.030;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=5.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=1.148;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:61,95:0.61:156
chr16	84907670	rs2934486	G	C	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.278;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:73,37:0.34:110
chr16	84914299	rs59111100	A	AAATT	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.502;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr16	84940479	rs1874008	T	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	85009970	rs7195377	A	G	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	85011423	rs57465878	CA	C	149.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	85011480	rs8045409	T	C	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	85011622	rs8044638	G	A	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	85015541	rs16975086	G	A	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	85023855	rs931713	C	T	9456.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr16	85105296	rs12445079	C	T	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	85105554	rs8058770	A	C	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	85105643	rs12597135	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	85106500	rs7184546	C	G	5878.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	85109328	rs16975200	A	G	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	85112002	rs2291967	T	G	8100.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr16	85112097	rs12932461	C	G	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	85120500	rs7206590	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	85120609	rs2291962	A	G	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	85139173	rs8050910	G	T	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:45,136:0.75:181
chr16	85145800	rs60296580	C	G	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:11,39:0.78:50
chr16	85145977	rs9931038	T	C	4393.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:98,212:0.68:310
chr16	85690338	rs4843185	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr16	85690878	rs34805959	C	CA	6734.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.869;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.579;QD=19.69;ReadPosRankSum=0.740;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:128,214:0.63:342
chr16	85691294	rs7404958	A	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	85699527	rs7195186	A	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr16	85704584	rs2303202	A	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-2.043;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr16	85706047	rs9940601	A	C	3140.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:82,150:0.65:232
chr16	85711860	rs1053328	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr16	85712105	rs3815795	C	T	127.03	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr16	85720945	rs3815796	C	T	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr16	85720955	rs3815797	G	A	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:47,71:0.60:118
chr16	85721297	rs9930592	T	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	85722355	rs2303204	GC	TT	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;JOINED;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr16	85722560	rs58171120	C	G	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:48,107:0.69:155
chr16	85743732	rs2305357	C	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	85768717	rs1862733	C	T	2959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-3.229;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:63,134:0.68:197
chr16	85775064	rs388855	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	85775097	rs72803098	G	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,48:0.76:63
chr16	85775175	rs446444	G	A	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	85813231	rs8587	A	C	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.07;ReadPosRankSum=-0.936;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr16	85813526	rs301163	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-1.465;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr16	85813880	rs301164	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	85813963	rs301165	C	T	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr16	85814899	rs3081701	T	TAGTC	12481.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr16	85814995	rs301166	A	G	6165.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:2,244:0.99:246
chr16	85815074	rs301167	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	85838093	rs2599088	G	A	213.98	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr16	85838115	rs2733963	G	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	85838166	rs2599089	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	85838195	rs2733964	A	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	85838503	rs2599090	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	85838532	rs2733965	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	85838653	rs2599091	T	C	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	85838804	rs11419687	G	GA	2257.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	85839140	rs2599092	T	C	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	85839186	rs2733966	C	T	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	85839211	rs2075532	G	C	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	85839543	rs2641797	C	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	85839977	rs2075553	G	C	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:11,62:0.85:73
chr16	85840035	rs5818557	CA	C	6339.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	85945076	rs2292980	T	C	5622.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.143;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=3.338;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-0.872;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,219:1.00:220
chr16	85945231	rs8052064	C	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:98,40:0.29:138
chr16	85952248	.	G	A	1552.77	.	AC=1;AF=0.500;AN=2;DP=271;set=Intersection	GT:AD:AF:DP	0/1:178,91:0.34:269
chr16	85953682	rs16940005	G	C	4153.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:87,191:0.69:278
chr16	85953689	.	A	G	1773.77	.	AC=1;AF=0.500;AN=2;DP=350;set=Intersection	GT:AD:AF:DP	0/1:232,113:0.33:345
chr16	86369306	.	C	A	20	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=2;NR=2;PP=20;QD=13.6928031368;SC=ACGCAGCACCCGCAGTCTCCA;SbPval=0.36;Source=Platypus;TC=13;TCF=9;TCR=4;TR=4;WE=86369314;WS=86369296;set=Platypus	GT:AD:AF:DP	1/0:9,4:0.31:13
chr16	86369530	.	TC	T	2061.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.908;QD=9.86;ReadPosRankSum=-2.514;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:135,74:0.35:209
chr16	86369583	rs71388033	TG	T	2550.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:28,65:0.70:93
chr16	86369597	rs71390813	G	A	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr16	86565826	rs3751803	C	G	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	86574726	rs1025057	C	G	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr16	86574818	rs17192954	C	G	7459.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.90;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	86574897	rs35698660	T	TA	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.581;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.260;QD=6.66;ReadPosRankSum=1.308;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr16	86575460	rs3213418	C	G	6322.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	86585905	rs8046613	C	A	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	86588655	rs2354022	G	C	23158.77	.	AC=2;AF=1.00;AN=2;DB;DP=920;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,904:1.00:904
chr16	86588993	rs3751796	T	C	3443.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:105,159:0.60:264
chr16	87339278	rs11646030	T	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.693;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr16	87344687	rs74038423	C	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.73;ReadPosRankSum=0.610;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr16	87344867	rs74038425	G	A	3261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-0.551;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:75,155:0.67:230
chr16	87349333	rs6540037	A	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	87349489	rs7193801	A	G	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	87349529	rs7198660	T	C	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.28;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	87349529	.	TAATA	CAATA,CAATG	293	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.57;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=18;MMLQ=26;MQ=60.0;NF=14,4;NR=28,11;PP=293,178;QD=7.80407648922;SC=TGACTCTTAATAATAAAGCCC;SbPval=0.56;Source=Platypus;TC=42;TCF=14;TCR=28;TR=42,15;WE=87349541;WS=87349519;set=Platypus	GT:AF:DP	0/1:1.00:42
chr16	87349533	rs2277850	A	G	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-1.455;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr16	87350997	rs4843592	A	G	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	87365222	rs2318446	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr16	87376605	rs2303763	C	T	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:83,123:0.60:206
chr16	87376623	rs4843237	C	G	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	87377455	rs2303764	G	C	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:25,79:0.76:104
chr16	87416903	rs8058715	A	T	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	87426028	rs8043569	T	C	2454.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=-1.110;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:2,99:0.98:101
chr16	87436382	rs8044820	G	A	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	87436720	rs1054521	G	T	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.43;QD=25.84;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	87436764	rs1054528	A	G	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.95;QD=25.69;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	87445363	rs1050846	G	A	8052.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr16	87445839	rs3748400	C	T	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	87446053	rs2042395	G	A	6903.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	87452546	rs4240794	C	A	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	87452584	rs8046992	C	T	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	87525409	rs146149024	T	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-2.200;QD=3.86;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr16	87525417	.	G	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-2.200;QD=3.86;ReadPosRankSum=-2.200;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr16	87677791	rs918367	A	C	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	87678144	rs918368	T	C	14445.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr16	87678249	rs9934222	G	A	3882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-0.645;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:670,265:0.28:935
chr16	87723838	rs34767155	T	C	2675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.444;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:298,159:0.35:457
chr16	87729334	rs34111279	C	CA	3202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.822;QD=6.10;ReadPosRankSum=3.005;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:403,122:0.23:525
chr16	87729699	rs74589749	C	T	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:64,21:0.25:85
chr16	87729743	rs55681758	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr16	87733990	rs202032438	T	G	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:232,105:0.31:337
chr16	87734747	rs35750555	C	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr16	87735527	rs7199037	G	A	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:205,110:0.35:315
chr16	87741662	rs2290019	C	A	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.481;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:163,52:0.24:215
chr16	87742129	rs2290017	G	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:150,66:0.31:216
chr16	87748198	rs2081981	G	C	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.262;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:133,52:0.28:185
chr16	87760337	rs67926154	A	C	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	87764267	rs9934565	A	T	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.923;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:204,93:0.31:297
chr16	87782258	rs16943239	G	A	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.088;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:112,36:0.24:148
chr16	87788756	rs2303770	A	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	87788864	rs2303771	G	A	822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=1.199;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:85,50:0.37:135
chr16	87870312	rs12444670	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:73,18:0.20:91
chr16	87870379	rs16943320	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr16	87871366	rs3815559	G	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr16	87871582	rs2287120	G	A	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:208,117:0.36:325
chr16	87871714	rs2287121	T	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.064;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr16	87872488	rs2287122	G	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr16	87873577	rs12927136	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr16	87874107	rs113883650	TATATG	T	1440.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;MQ=59.91;set=Intersection	GT:AD:AF:DP	0/1:109,43:0.28:152
chr16	87874182	rs12931876	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=1.784;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr16	87874217	rs143021327	TGGGA	T	385.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr16	87969777	.	TAA	T	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.666;QD=0.83;ReadPosRankSum=-1.076;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:73,17:0.19:90
chr16	88017627	rs149283596	A	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr16	88052161	rs7499814	C	A	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr16	88066655	rs11641367	A	G	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-5.694;QD=16.03;ReadPosRankSum=0.326;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr16	88066659	rs11646301	C	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.173;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-6.018;QD=13.33;ReadPosRankSum=1.176;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr16	88066717	rs74992447	C	T	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:59,117:0.66:176
chr16	88105053	rs11117358	T	A	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=1.205;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:287,109:0.28:396
chr16	88105725	rs8050209	G	A	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:66,123:0.65:189
chr16	88123598	rs8063486	C	G	5201.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=25.62;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr16	88123697	rs8063654	C	A	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr16	88124525	rs28650772	A	G	1475.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.191;MLEAC=2;MLEAF=1.000;MQ=59.25;MQRankSum=-0.195;QD=23.42;ReadPosRankSum=1.213;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,62:0.98:63
chr16	88134285	rs11860533	A	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	88494947	rs11648572	T	C	24078.77	.	AC=2;AF=1.00;AN=2;DB;DP=930;set=Intersection	GT:AD:AF:DP	1/1:0,917:1.00:917
chr16	88494976	rs11640794	A	C	27578.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.415;ClippingRankSum=0.000;DB;DP=1072;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.99;ReadPosRankSum=0.330;SOR=0.225;set=HC	GT:AD:AF:DP	1/1:1,1060:1.00:1061
chr16	88495407	rs7199961	G	C	12562.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr16	88495654	rs12927001	A	G	29920.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=1211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=-1.253;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:6,1163:0.99:1169
chr16	88496692	rs140480823	G	A	5063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.549;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=2.119;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:104,236:0.69:340
chr16	88497031	rs9924504	T	C	8252.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr16	88497400	rs9938800	G	A	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	88497446	rs7197071	A	G	10470.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr16	88498221	rs4782300	C	T	21906.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=837;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.36;ReadPosRankSum=-0.630;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:2,829:1.00:831
chr16	88498297	rs12445417	T	G	31386.77	.	AC=2;AF=1.00;AN=2;DB;DP=1230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,1209:1.00:1209
chr16	88499539	rs9931465	C	G	12591.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr16	88501034	rs12598474	G	C	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.230;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:296,106:0.26:402
chr16	88501971	rs3812956	T	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.441;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:120,38:0.24:158
chr16	88502482	rs3812953	C	T	3413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=14.28;ReadPosRankSum=-1.715;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:79,160:0.67:239
chr16	88502505	rs1983014	A	G	5198.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	88504850	rs1105066	G	C	1474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.612;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:250,95:0.28:345
chr16	88504868	rs904783	A	G	11093.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,372:0.99:374
chr16	88505635	rs4782301	A	G	9704.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:309,460:0.60:769
chr16	88505734	rs4782362	C	T	4353.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	88505748	rs45504291	G	A	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,43:0.39:109
chr16	88535242	rs55823018	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr16	88535341	rs56292801	G	A	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:35,103:0.75:138
chr16	88535407	rs35613341	C	G	4165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=3.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=0.485;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:99,196:0.66:295
chr16	88535591	rs36024491	C	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr16	88552370	rs3751673	A	G	5201.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:124,246:0.66:370
chr16	88593209	rs199766456	CCT	C	416.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-1.874;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:77,28:0.27:105
chr16	88593210	rs35678431	CT	C	1412.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:40,65:0.62:105
chr16	88599695	rs67712719	GGA	G	7812.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.00;SOR=1.346;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	88599697	.	AG	CC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=3;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=24;NR=49;PP=2947;QD=20;SC=GCCAGAGCGGAGCCTCTGGCC;SbPval=0.49;Source=Platypus;TC=78;TCF=25;TCR=53;TR=73;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:5,73:0.94:78
chr16	88599699	.	CCTCTGG	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=24;MQ=60.0;NF=6;NR=49;PP=2965;QD=20;SC=CAGAGCGGAGCCTCTGGCCCA;SbPval=0.55;Source=Platypus;TC=55;TCF=6;TCR=49;TR=55;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	88599700	rs67322929	CT	C	7810.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	88599702	rs67873604	CTGG	C	7670.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.299;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	88600079	rs13335396	C	G	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.00;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr16	88601481	rs2279777	C	T	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-1.826;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:90,26:0.22:116
chr16	88620069	rs2340958	C	A	162.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-0.366;QD=23.25;ReadPosRankSum=-1.465;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	88620070	rs2340957	C	A	162.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-0.431;QD=27.13;ReadPosRankSum=-1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr16	88620071	rs2340956	C	A	162.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-0.524;QD=32.55;ReadPosRankSum=-1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr16	88620148	rs11647546	C	G	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.55;ReadPosRankSum=-0.875;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr16	88620195	rs2879897	T	G	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=-1.017;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:16,36:0.69:52
chr16	88633052	rs56983565	G	C	4482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=2.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=-0.180;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:85,206:0.71:291
chr16	88643457	rs936621	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	88644005	rs899728	A	G	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	88652880	rs72809432	T	G	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr16	88664443	rs8051141	C	T	501.31	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:2,20:0.91:22
chr16	88664758	rs3887592	T	C	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.714;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:103,44:0.30:147
chr16	88666035	rs6500481	G	A	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	88675177	rs9932685	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr16	88675194	rs9932692	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	88675529	rs9930974	C	T	144.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	88688832	rs3751675	A	G	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:23,70:0.75:93
chr16	88695300	rs4782387	C	T	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	88695332	rs4782306	G	C	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.62;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	88695338	rs4782388	C	G	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.05;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	88697487	rs2291160	G	A	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	88705804	rs2254073	T	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr16	88709712	rs7195830	A	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr16	88709828	rs1049254	A	G	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=2.414;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:14,29:0.67:43
chr16	88712712	.	T	TGCAGACCCAGGGGACGTGTGCGGACCGGGGCTGCAAAGTCTCAGCACAAG	648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=-2.764;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr16	88712733	rs12926425	C	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.650;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr16	88712767	rs12933505	A	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:47,13:0.22:60
chr16	88712780	rs12933512	A	C	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-0.711;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr16	88712780	.	ACA	CCG	575	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=12;NR=2;PP=575;QD=44.8905624902;SC=CTTGATGTGGACACTAGCGGC;SbPval=0.91;Source=Platypus;TC=52;TCF=38;TCR=14;TR=14;WE=88712790;WS=88712757;set=Platypus	GT:AD:AF:DP	0/1:38,14:0.27:52
chr16	88712782	rs12709103	A	G	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-0.969;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:52,20:0.28:72
chr16	88713236	rs4673	A	G	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:404,175:0.30:579
chr16	88713473	rs4782308	G	A	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.108;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:245,91:0.27:336
chr16	88713501	rs4782393	A	G	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.127;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:358,122:0.25:480
chr16	88714559	rs2306422	C	T	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:189,69:0.27:258
chr16	88716534	.	A	G	25	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=2;MGOF=82;MMLQ=23;MQ=58.62;NF=5;NR=0;PP=25;QD=11.9542425094;SC=GAGTGGTGGCAGCGGGCCCCT;SbPval=1.0;Source=Platypus;TC=22;TCF=18;TCR=4;TR=5;WE=88716542;WS=88716532;set=Platypus	GT:AD:AF:DP	0/1:17,5:0.23:22
chr16	88717074	rs3794624	G	A	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:372,174:0.32:546
chr16	88717386	rs8053867	T	C	10845.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr16	88719877	rs12926212	C	G	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	88721012	rs12935454	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	88723538	rs112485764	T	TG	357.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr16	88724347	rs2279258	G	T	5023.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	88729573	rs3794625	C	T	3116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-0.282;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:595,223:0.27:818
chr16	88752693	rs11076698	T	G	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	88752920	.	T	C	564.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr16	88762943	rs1132579	A	T	1767.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-0.715;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:9,106:0.92:115
chr16	88763151	rs13556	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.625;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr16	88767769	rs2306049	G	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:110,44:0.29:154
chr16	88767861	rs2306048	C	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr16	88772491	rs7194105	A	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	88772746	rs112070238	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=0.772;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr16	88772815	rs880233	C	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr16	88773753	rs6500490	C	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr16	88776141	rs4598894	G	A	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	88776148	rs4377140	C	T	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	88776297	rs4390574	T	C	11017.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr16	88776499	rs61744010	G	T	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.461;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:96,37:0.28:133
chr16	88777995	rs11076704	C	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=2.795;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:151,37:0.20:188
chr16	88778133	rs2879902	C	A	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	88778427	rs11361741	GC	G	8962.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	88778615	rs7205989	G	A	4376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.807;QD=12.61;ReadPosRankSum=-0.528;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:138,209:0.60:347
chr16	88778831	rs7201610	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr16	88779328	rs67815044	GC	G	1586.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:35,64:0.65:99
chr16	88779371	.	G	GC	352	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=5;HapScore=2;MGOF=21;MMLQ=25;MQ=44.96;NF=0;NR=24;PP=352;QD=15.75;SC=GCCCCTGAGAGCCCCCTTCCC;SbPval=1.0;Source=Platypus;TC=26;TCF=0;TCR=26;TR=24;WE=88779379;WS=88779361;set=Platypus	GT:AD:AF:DP	1/0:2,24:0.92:26
chr16	88779739	rs11549837	A	G	10437.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:1,422:1.00:423
chr16	88779865	rs4782320	G	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:132,65:0.33:197
chr16	88779952	rs74757912	C	CCT	1685.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	88780175	rs4782321	G	A	3123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-1.079;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:464,201:0.30:665
chr16	88780472	rs7205626	T	C	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	88780488	rs74880807	C	G	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.032;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:113,58:0.34:171
chr16	88780518	rs3826076	A	G	7627.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	88780634	rs11278302	AGGTGTG	A	7358.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=7.085;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=0.000;QD=23.89;ReadPosRankSum=-0.162;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:115,193:0.63:308
chr16	88780635	rs149847195	G	GGTGT	3704.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=0.000;QD=11.87;ReadPosRankSum=1.980;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:205,107:0.34:312
chr16	88780680	rs145565756	CTGTGCGCGGG	C	1209.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,36:0.31:118
chr16	88780685	rs7191439	C	T	1761.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:37,80:0.68:117
chr16	88780923	rs8050715	C	G	10110.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:2,399:1.00:401
chr16	88781040	rs8059048	A	G	14140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=0.179;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:274,669:0.71:943
chr16	88781073	rs11549835	G	A	3549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=846;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.511;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:603,240:0.28:843
chr16	88781125	rs8043637	T	C	13821.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:3,474:0.99:477
chr16	88781225	rs2306047	T	C	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:66,128:0.66:194
chr16	88781384	rs3217719	C	CTGT	4912.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:57,123:0.68:180
chr16	88781419	rs2306046	A	G	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=25.58;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	88781791	rs1061247	A	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr16	88782676	rs2290902	A	G	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	88783374	rs8044367	A	G	8952.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr16	88783449	rs8057031	C	G	18087.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,680:1.00:680
chr16	88783521	rs6500491	T	C	20602.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,788:1.00:788
chr16	88783738	rs4782432	A	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	88783903	rs7186082	A	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.40;ReadPosRankSum=-0.366;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr16	88785072	rs4620939	G	C	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	88785126	rs4520817	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	88785206	rs79311053	C	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr16	88785242	rs113385327	A	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr16	88785286	rs142864864	TTATTTTTTTG	T	642.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:53,20:0.27:73
chr16	88786907	.	G	C	6262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.20;ReadPosRankSum=0.492;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:148,293:0.66:441
chr16	88786967	rs4401037	C	T	7636.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr16	88787704	rs8043924	G	C	8187.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr16	88788477	rs9935872	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	88788903	rs4238687	T	G	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	88788934	rs4238686	A	G	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	88788960	rs3816618	C	A	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:48,123:0.72:171
chr16	88789178	rs34745095	G	A	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:41,87:0.68:128
chr16	88791707	rs8050515	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	88792047	rs4782430	A	G	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	88792097	rs4782429	A	G	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	88792933	rs2247261	C	T	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:92,192:0.68:284
chr16	88793090	rs4516218	A	G	14682.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr16	88793103	rs4424896	C	G	9672.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.20;ReadPosRankSum=-0.297;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:4,339:0.99:343
chr16	88793560	.	C	T	2587.77	.	AC=1;AF=0.500;AN=2;DP=190;set=Intersection	GT:AD:AF:DP	0/1:64,123:0.66:187
chr16	88793823	rs2879904	C	T	346.90	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr16	88793843	rs2242169	C	T	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	88793858	rs2242170	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	88793872	rs113907912	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr16	88793910	rs2242171	C	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr16	88800176	rs11649478	G	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:88,44:0.33:132
chr16	88800372	.	GTCC	G	426	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=1;MGOF=17;MMLQ=26;MQ=60.74;NF=5;NR=23;PP=426;QD=15.5;SC=CGTCCCTGGAGTCCTCCTCCT;SbPval=0.41;Source=Platypus;TC=80;TCF=12;TCR=68;TR=28;WE=88800382;WS=88800362;set=Platypus	GT:AD:AF:DP	0/1:52,28:0.35:80
chr16	88800395	rs144777557	CCTG	C	909.73	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:255,75:0.23:330
chr16	88800477	rs77376965	G	A	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=7.823;QD=3.64;ReadPosRankSum=1.711;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:280,99:0.26:379
chr16	88800545	rs66935855	CGCTTCT	C	2562.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:37,66:0.64:103
chr16	88800785	rs35265318	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.139;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr16	88800814	rs35353288	G	A	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.052;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:107,28:0.21:135
chr16	88800913	rs34908386	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=3.011;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:129,30:0.19:159
chr16	88801026	rs3214056	G	A	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:81,203:0.71:284
chr16	88802540	rs734918	G	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr16	88802573	rs78905828	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:71,29:0.29:100
chr16	88802830	.	A	G	153	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=4;HapScore=1;MGOF=7;MMLQ=28;MQ=59.45;NF=5;NR=10;PP=153;QD=12.5180808365;SC=CGCGGCAGAGAGGGCTGCACA;SbPval=0.27;Source=Platypus;TC=52;TCF=12;TCR=40;TR=15;WE=88802838;WS=88802820;set=Platypus	GT:AD:AF:DP	0/1:37,15:0.29:52
chr16	88803124	rs13333358	T	C	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=3.114;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:24,67:0.74:91
chr16	88803195	rs4782410	T	C	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	88803925	rs66881450	G	GC	1213.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr16	88803934	rs11643304	A	C	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr16	88803982	rs6500493	C	G	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr16	88804618	rs8060643	G	A	4098.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:69,185:0.73:254
chr16	88804734	rs7184427	A	G	6772.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr16	88804856	rs11076706	G	A	1990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.861;QD=12.44;ReadPosRankSum=-1.085;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:67,93:0.58:160
chr16	88804924	rs34600315	TC	T	6085.73	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:131,204:0.61:335
chr16	88805183	rs7185630	G	A	5275.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:119,247:0.67:366
chr16	88805231	rs12443723	G	A	3806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.40;ReadPosRankSum=0.541;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:55,101:0.65:156
chr16	88805236	rs7185664	G	A	3634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=0.722;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:49,89:0.64:138
chr16	88807878	rs2242164	G	A	2764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.71;ReadPosRankSum=-0.463;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:46,130:0.74:176
chr16	88808111	rs11076707	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr16	88808743	rs6500495	A	G	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	88808862	rs7201439	C	T	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.62;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	88808872	rs11644443	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.123;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr16	88808918	rs11648555	C	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.936;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr16	88809368	rs28525359	G	T	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.651;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:388,102:0.21:490
chr16	88809434	rs9925084	A	G	1986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=967;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.623;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:769,195:0.20:964
chr16	88809480	rs9925171	A	G	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-2.770;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:736,157:0.18:893
chr16	88809686	rs9927855	T	C	3186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=768;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-2.298;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:547,217:0.28:764
chr16	88809773	rs8048714	G	C	12429.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.891;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr16	88810129	rs8053135	A	G	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	88815647	rs112962992	C	CA	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.966;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.563;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:100,39:0.28:139
chr16	88870099	rs865103	T	C	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:40,79:0.66:119
chr16	88872145	rs507329	T	C	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	88872229	rs480727	A	G	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:80,119:0.60:199
chr16	88872511	rs510862	T	C	11570.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,454:1.00:454
chr16	88874632	rs572275	C	G	7189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=0.014;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:166,340:0.67:506
chr16	88876666	rs8191489	C	G	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:87,166:0.66:253
chr16	88880811	rs11076715	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr16	88880965	rs11076716	C	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr16	88884466	rs2303271	C	T	6495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.938;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:176,315:0.64:491
chr16	88893013	rs3859024	C	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr16	88901850	rs11076721	T	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr16	88902183	rs1064315	G	A	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:72,163:0.69:235
chr16	88902276	rs12934499	C	T	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:32,90:0.74:122
chr16	88902518	rs2269333	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr16	88902780	rs12444543	A	G	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:40,136:0.77:176
chr16	88902820	rs11076722	T	C	2151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.19;ReadPosRankSum=1.100;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:15,54:0.78:69
chr16	88902823	rs11076723	G	T	2160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.24;ReadPosRankSum=-0.030;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:12,53:0.82:65
chr16	88907283	rs8054994	G	T	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,50:0.63:79
chr16	88908306	rs34278797	G	A	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:58,116:0.67:174
chr16	88909028	rs71395332	C	T	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr16	88909095	rs35137494	G	A	3496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-0.402;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:75,164:0.69:239
chr16	88921493	rs12932588	C	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr16	88921634	rs34150867	C	G	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:55,111:0.67:166
chr16	88922989	rs113289677	A	AC	578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.29;ReadPosRankSum=-0.493;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,23:0.77:30
chr16	88927221	rs3826061	T	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:40,83:0.67:123
chr16	88931274	rs76267236	C	T	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-1.015;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:159,60:0.27:219
chr16	88931363	rs141563331	A	AGGGAG	4889.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.63;ReadPosRankSum=0.893;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:59,118:0.67:177
chr16	88931914	rs889753	T	C	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.15;ReadPosRankSum=-0.094;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:21,59:0.74:80
chr16	88946955	rs564705	A	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	88948971	.	GGCATGGCTGTGGGCGTGGCTGTGTGT	G	425.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr16	88949000	rs4782504	A	G	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr16	88958282	rs3743541	C	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr16	88958626	.	G	A	203.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	89119156	.	CT	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=3.669;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.487;QD=1.22;ReadPosRankSum=0.282;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:122,50:0.29:172
chr16	89160158	rs76688594	G	C	97.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	89160329	rs145228567	C	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.71;ReadPosRankSum=1.248;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr16	89160452	rs9938075	A	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	89167066	rs57558972	C	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	89167075	rs11273288	C	CCCCAGGAGGCTCCCGGGAG	3524.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	89167094	rs7188200	T	C	4871.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	89167140	rs7201122	G	C	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr16	89167395	rs6500526	C	T	18878.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr16	89167404	rs7193255	T	C	19089.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr16	89167431	rs6500527	G	C	12127.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr16	89167443	rs6500528	T	C	12055.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr16	89167458	rs6500529	C	A	11986.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr16	89167792	rs8060043	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr16	89168981	rs4782457	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	89169205	rs4782456	C	G	10244.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	89169219	rs10578141	CCT	C	8993.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	89169312	rs4782455	T	C	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	89178457	.	G	GTGCCTGCTCATCTTCCCACCGAGTGCTTCCTTTCCTCCGCCGCCGTGGGTCTC	1700.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=154.61;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	89178773	rs4782449	A	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	89180664	rs9940965	C	G	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	89180883	rs3743979	G	A	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	89180935	rs3743980	G	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	89187378	rs3743983	G	C	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	89188672	rs8058601	C	A	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	89212219	.	G	A	1193.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:17,50:0.75:67
chr16	89217348	.	A	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.34;ReadPosRankSum=0.027;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr16	89235483	rs72819346	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,21:0.31:68
chr16	89251776	rs58079876	G	A	10259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.31;ReadPosRankSum=-0.358;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:121,301:0.71:422
chr16	89251798	rs2287356	C	T	8362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.13;ReadPosRankSum=0.969;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:98,222:0.69:320
chr16	89251851	rs2287354	A	G	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:73,151:0.67:224
chr16	89254064	rs12929648	A	G	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:78,145:0.65:223
chr16	89258747	rs75791347	A	C	2419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=8.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-1.161;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:70,113:0.62:183
chr16	89259993	rs3815615	A	G	6993.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	89263851	rs3743986	T	C	5205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.110;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:122,254:0.68:376
chr16	89264460	rs7202874	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	89265087	rs61732365	A	G	11608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=-0.458;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:136,303:0.69:439
chr16	89265101	rs74640353	C	T	10920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.03;ReadPosRankSum=-1.640;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:126,278:0.69:404
chr16	89265466	rs12926888	A	G	12708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=824;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=1.064;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:221,597:0.73:818
chr16	89267769	rs34679577	GC	G	732.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.31;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	89287460	rs72819396	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:87,38:0.30:125
chr16	89287481	rs117976521	C	A	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,81:0.69:117
chr16	89289624	rs12920028	G	A	5926.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:120,285:0.70:405
chr16	89291309	rs28533907	A	T	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	89291945	rs11464538	A	AT	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.029;MLEAC=1;MLEAF=0.500;MQ=61.85;MQRankSum=9.666;QD=6.62;ReadPosRankSum=1.545;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:99,28:0.22:127
chr16	89291948	rs12926996	C	T	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.831;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=61.83;MQRankSum=9.707;QD=6.44;ReadPosRankSum=1.808;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:100,28:0.22:128
chr16	89291951	rs12926997	C	T	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.981;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.500;MQ=61.69;MQRankSum=10.107;QD=5.93;ReadPosRankSum=2.288;SOR=1.097;set=HC	GT:AD:AF:DP	0/1:110,28:0.20:138
chr16	89293271	rs28417933	A	C	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:192,103:0.35:295
chr16	89293291	rs117690401	G	A	4204.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:104,199:0.66:303
chr16	89293614	rs4785626	A	G	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:133,67:0.34:200
chr16	89294381	rs28415940	T	C	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:208,101:0.33:309
chr16	89294439	rs9921361	G	T	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.288;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:168,95:0.36:263
chr16	89294511	rs28638280	C	T	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=3.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=2.963;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:184,88:0.32:272
chr16	89294697	rs60437616	C	T	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.974;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:126,61:0.33:187
chr16	89294798	rs118093429	A	G	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:43,118:0.73:161
chr16	89295046	rs12927047	T	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr16	89299054	rs71158785	T	TA	565.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.667;QD=12.86;ReadPosRankSum=-1.334;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr16	89299200	rs61078268	C	A	6971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.748;QD=8.41;ReadPosRankSum=-1.902;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:607,222:0.27:829
chr16	89299227	rs62068537	C	T	5652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=939;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.349;QD=6.05;ReadPosRankSum=0.688;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:685,249:0.27:934
chr16	89299268	.	A	ATCAACTCGCACTGCGTATGCAAC	2479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DP=831;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=61.15;MQRankSum=14.399;QD=7.38;ReadPosRankSum=-7.259;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:221,115:0.34:336
chr16	89299280	rs62068538	T	A	3252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.31;MQRankSum=-5.908;QD=3.95;ReadPosRankSum=0.098;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:599,224:0.27:823
chr16	89299851	rs35483107	G	A	19024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.616;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-0.788;QD=35.43;ReadPosRankSum=8.731;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:62,475:0.88:537
chr16	89299851	.	GTG	ATA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=15;MMLQ=24;MQ=56.45;NF=133;NR=121;PP=2944;QD=20;SC=CTCGCACTGCGTGTGCAACTC;SbPval=0.51;Source=Platypus;TC=334;TCF=175;TCR=159;TR=254;WE=89299861;WS=89299841;set=Platypus	GT:AD:AF:DP	1/0:80,254:0.76:334
chr16	89299853	rs34789784	G	A	19125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.377;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-0.798;QD=36.50;ReadPosRankSum=8.555;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:61,463:0.88:524
chr16	89300015	rs62068548	A	G	21838.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:1,848:1.00:849
chr16	89300147	rs62068549	A	G	15959.73	.	AC=2;AF=1.00;AN=2;DB;DP=1019;set=Intersection	GT:AD:AF:DP	1/1:2,629:1.00:631
chr16	89344863	.	G	A	365.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	89345122	rs3102367	G	A	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-1.561;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr16	89345127	rs144104266	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.365;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:49,12:0.20:61
chr16	89345408	rs3096305	G	A	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.581;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:319,132:0.29:451
chr16	89350038	rs2279348	G	A	3104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=674;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-2.603;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:467,200:0.30:667
chr16	89350178	rs2279349	G	A	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	89371827	rs3114912	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=3.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.635;SOR=1.281;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr16	89371839	rs2277908	G	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.570;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr16	89379900	rs16965550	G	A	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:14,72:0.84:86
chr16	89379936	rs3102350	T	C	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	89389645	rs3114900	G	C	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	89574166	rs3809641	C	G	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:55,123:0.69:178
chr16	89576879	.	G	GT	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=9.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.245;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr16	89577046	rs3922633	C	T	3135.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:52,138:0.73:190
chr16	89590060	rs28643511	G	A	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.680;QD=15.42;ReadPosRankSum=0.345;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr16	89590168	rs113476208	T	TATCTC	2751.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,67:0.60:112
chr16	89590243	rs3803680	G	A	4954.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:131,234:0.64:365
chr16	89590667	rs3803679	T	C	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr16	89596106	rs3803676	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr16	89597057	rs4785690	G	T	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:33,70:0.68:103
chr16	89597221	rs4785691	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chr16	89598760	rs463701	A	G	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:20,54:0.73:74
chr16	89612979	rs35936864	AC	A	1562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=2.314;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:66,95:0.59:161
chr16	89628073	rs9930567	G	A	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:30,65:0.68:95
chr16	89629218	rs258327	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr16	89649675	rs455868	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr16	89650371	rs408800	T	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.615;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr16	89653032	rs452176	G	A	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:64,133:0.68:197
chr16	89653563	rs9924678	G	T	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.494;QD=16.40;ReadPosRankSum=-1.625;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:8,44:0.85:52
chr16	89653816	rs74213330	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr16	89653999	rs140664874	TTGAG	T	4910.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:53,122:0.70:175
chr16	89654123	rs76691791	A	G	865.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.06;ReadPosRankSum=0.446;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr16	89654124	rs79838180	G	T	865.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.85;ReadPosRankSum=-1.629;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr16	89654130	rs71374184	C	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	89656163	rs397564	A	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr16	89656251	rs464349	T	C	1838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.833;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:236,113:0.32:349
chr16	89696999	rs395593	C	T	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.57;QD=30.54;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	89697026	.	GC	G	782.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=65.09;MQRankSum=4.305;QD=24.46;ReadPosRankSum=-0.103;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr16	89697029	.	A	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=64.15;MQRankSum=4.305;QD=24.74;ReadPosRankSum=-0.559;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr16	89697040	rs76137866	T	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=62.38;MQRankSum=2.875;QD=20.70;ReadPosRankSum=-0.205;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr16	89697044	rs75324640	G	A	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.373;MLEAC=1;MLEAF=0.500;MQ=62.29;MQRankSum=2.962;QD=19.90;ReadPosRankSum=-0.379;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr16	89703424	rs445537	A	G	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr16	89703519	rs461115	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr16	89712889	rs460879	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr16	89713174	rs460984	C	T	12045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=0.805;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:235,562:0.71:797
chr16	89717781	rs141950187	AAAAC	A	548.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr16	89720409	rs258338	T	A	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	89723870	rs34878706	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr16	89724268	rs35415928	C	T	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-1.254;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:45,33:0.42:78
chr16	89724572	rs154664	T	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	89751857	.	CCGCAGTGGGCGGTGGTTTGGGCCCGACCGAGCTGGTCT	C	966.73	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr16	89753031	rs397891	G	C	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:13,37:0.74:50
chr16	89753971	rs258325	T	C	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr16	89754255	rs258324	T	G	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	89758973	rs187282	A	G	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	89760492	rs465507	C	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr16	89760552	rs460057	T	C	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr16	89760652	rs2162943	C	T	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:255,116:0.31:371
chr16	89760712	rs2115400	G	A	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:145,86:0.37:231
chr16	89761214	.	ACCCGCAGCCCCCGCCCGTGCCCACGCCCTCTGCG	A	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.185;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.031;QD=16.17;ReadPosRankSum=-0.046;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:18,34:0.65:52
chr16	89763045	rs460367	C	T	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	89763214	rs4247353	T	C	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:162,97:0.37:259
chr16	89763263	rs462769	T	C	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:81,129:0.61:210
chr16	89763359	rs3803690	G	C	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=0.312;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:58,38:0.40:96
chr16	89774396	rs1110331	G	A	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=1.214;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:228,90:0.28:318
chr16	89774411	rs11860230	T	C	6957.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr16	89775422	rs59660050	C	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:67,51:0.43:118
chr16	89775429	rs143353176	C	CCCCG	4173.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	89777761	rs12920315	C	T	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-2.409;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:232,114:0.33:346
chr16	89778202	rs376041423	G	GC	1593.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,38:0.76:50
chr16	89778219	rs28588261	A	T	2014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=0.052;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:19,60:0.76:79
chr16	89778224	rs7206836	G	C	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.63;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	89782989	rs7206570	A	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	89783187	rs4785706	C	T	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	89784336	rs7190099	C	T	7080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DB;DP=1420;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=0.302;QD=5.06;ReadPosRankSum=0.823;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:949,450:0.32:1399
chr16	89784521	rs10468304	T	A	39032.77	.	AC=2;AF=1.00;AN=2;DB;DP=1544;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.87;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,1509:1.00:1509
chr16	89785740	rs144409937	TGA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=1.184;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr16	89787040	rs4785589	C	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr16	89789898	rs6500437	T	C	1711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.422;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:355,121:0.25:476
chr16	89790167	rs4785590	G	C	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:50,104:0.68:154
chr16	89793555	rs2099105	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr16	89795485	rs7204478	C	T	100.94	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr16	89800529	rs9935559	C	T	5526.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:106,254:0.71:360
chr16	89804335	rs17233826	CT	C	6221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.961;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=5.948;QD=10.82;ReadPosRankSum=-0.305;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:356,219:0.38:575
chr16	89805261	rs1800359	A	G	2266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=1.078;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:437,160:0.27:597
chr16	89805977	rs1061646	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:99,48:0.33:147
chr16	89806347	rs7195906	A	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:137,56:0.29:193
chr16	89811196	rs9923733	T	C	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.203;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr16	89815049	rs1800347	T	C	8761.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:191,415:0.68:606
chr16	89815217	rs1800345	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr16	89818491	rs3743860	T	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr16	89818732	rs12931267	C	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.488;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:69,30:0.30:99
chr16	89836507	rs7200990	T	C	10461.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr16	89836865	rs886951	A	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=0.847;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr16	89836872	rs886950	T	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=1.565;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr16	89838078	rs1800340	A	G	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.690;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:116,27:0.19:143
chr16	89842029	rs3785275	C	G	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr16	89845194	rs1800337	A	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-2.343;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:127,29:0.19:156
chr16	89849583	rs2239360	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr16	89857622	.	T	C	24	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=2;MGOF=5;MMLQ=24;MQ=60.0;NF=3;NR=0;PP=24;QD=19.5904041824;SC=GAAGATCCGCTGAGGCCCCGA;SbPval=1.0;Source=Platypus;TC=7;TCF=7;TCR=0;TR=3;WE=89857630;WS=89857617;set=Platypus	GT:AD:AF:DP	1/0:4,3:0.43:7
chr16	89857700	rs8049660	A	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.912;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr16	89857964	rs1800330	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr16	89858505	rs6500452	T	C	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:223,78:0.26:301
chr16	89858525	rs1800287	C	G	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.040;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:177,63:0.26:240
chr16	89859008	rs3856	G	A	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr16	89859015	rs35617323	GT	G	751.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr16	89866043	rs7190823	T	C	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-0.261;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:181,111:0.38:292
chr16	89866160	rs7186192	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr16	89869761	rs1800286	T	C	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:210,89:0.30:299
chr16	89874559	rs11076627	A	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr16	89874628	rs1800285	C	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:112,69:0.38:181
chr16	89902482	rs12598477	T	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr16	89912063	rs13331995	T	C	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.512;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:148,46:0.24:194
chr16	89925556	rs7200842	G	A	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:235,95:0.29:330
chr16	89986546	rs1805009	G	C	8024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=1464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-1.407;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:970,483:0.33:1453
chr16	90000925	rs4396536	T	C	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr16	90004868	rs56378598	C	T	2885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.715;QD=14.22;ReadPosRankSum=-0.531;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:70,133:0.66:203
chr16	90020861	rs7195043	C	T	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	90023901	rs12596872	C	T	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:43,82:0.66:125
chr16	90027626	rs8063761	A	T	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=2.013;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr16	90029660	rs115841388	C	T	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr16	90030355	rs13330431	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:113,65:0.37:178
chr16	90030770	rs56219904	A	G	3355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-1.868;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:138,165:0.54:303
chr16	90032455	rs117204628	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr16	90037828	rs4785755	G	A	8148.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	90048395	rs45610233	C	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.956;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr16	90050880	rs4785759	A	C	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:24,64:0.73:88
chr16	90075100	rs11642185	C	G	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-0.725;QD=28.68;ReadPosRankSum=0.447;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr16	90075412	rs2241084	T	C	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	90078022	rs77381714	T	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:155,84:0.35:239
chr16	90093969	rs3743829	T	C	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,59:0.63:94
chr16	90094195	rs3743827	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr16	90094214	rs3743826	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr16	90095277	rs7191175	T	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr16	90095561	rs3785183	C	T	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:54,74:0.58:128
chr16	90095597	rs71137702	T	TGGGGCAGCCTACGGGGCAGGCTGC	915.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.707;MLEAC=1;MLEAF=0.500;MQ=63.01;MQRankSum=7.080;QD=13.27;ReadPosRankSum=-0.853;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:34,35:0.51:69
chr16	90099061	rs4324129	C	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:22,64:0.74:86
chr16	90102835	rs868045	A	G	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:153,58:0.27:211
chr16	90103087	rs4464078	C	T	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.192;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:179,64:0.26:243
chr16	90103117	rs7498985	G	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.751;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:117,39:0.25:156
chr16	90103246	rs4374173	C	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr16	90104019	rs2241036	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr16	90106769	rs145962792	A	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:216,71:0.25:287
chr16	90108832	rs2241035	C	T	14062.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr16	90109711	rs3743825	A	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:145,74:0.34:219
chr16	90109761	rs200414529	C	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.871;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr16	90110798	rs74583214	C	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr16	90128224	rs2077426	C	G	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	90133137	rs16966444	G	T	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	90141355	rs12925933	A	C	8218.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=25.93;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	90141477	rs7196459	T	G	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	90142087	rs35256427	G	A	9871.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr16	90142341	rs190467942	C	A	3027.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:41,135:0.77:176
chr16	90161164	rs8049480	G	A	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.668;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=4.829;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-12.496;QD=4.09;ReadPosRankSum=-1.865;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:179,31:0.15:210
chr16	90161168	rs191288996	T	G	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.325;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=5.548;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-13.208;QD=3.58;ReadPosRankSum=-3.148;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:184,38:0.17:222
chr16	90161231	rs8055916	T	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.624;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-8.079;QD=3.27;ReadPosRankSum=-0.215;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:135,47:0.26:182
chr17	6115	rs61739713	G	C	20232.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	1/1:0,788:1.00:788
chr17	6157	rs2294076	A	G	12124.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:1,465:1.00:466
chr17	11743	rs34663111	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	11830	rs62054999	A	G	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	13905	rs6565705	G	A	10717.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr17	14008	rs2294075	G	C	14749.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr17	22211	rs2294074	G	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	63824	rs77852841	G	A	2679.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	65632	rs7207457	C	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	131516	rs12942829	C	A	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	177359	rs67434950	G	T	7992.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr17	181474	rs12953074	T	C	17093.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,671:1.00:671
chr17	182990	.	A	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=2;HapScore=1;MGOF=7;MMLQ=17;MQ=54.97;NF=61;NR=169;PP=2965;QD=20;SC=GACACAGAGAAGGCCATTAGA;SbPval=0.61;Source=Platypus;TC=240;TCF=67;TCR=173;TR=230;WE=182998;WS=182980;set=Platypus	GT:AD:AF:DP	1/1:10,230:0.96:240
chr17	260142	rs7503725	G	T	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	260182	rs7502594	T	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	263294	rs35229416	C	G	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.92;QD=26.54;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	295777	rs9902142	C	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	423051	rs2034088	T	C	7654.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	440108	rs11653961	A	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.86;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	463843	rs741677	A	G	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	465993	rs36070043	G	GA	1451.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:3,72:0.96:75
chr17	504978	rs10521105	C	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	505162	rs4968055	A	G	6910.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	600502	rs2657633	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	602469	rs2543781	G	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	602753	.	TA	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.471;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr17	617869	rs11558129	G	A	30803.77	.	AC=2;AF=1.00;AN=2;DB;DP=1214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,1184:1.00:1184
chr17	641023	rs77532869	C	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	648186	rs7813	G	A	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	648498	rs2740349	C	T	8834.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	649547	rs910925	G	C	12618.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr17	649935	rs2740348	G	C	22786.77	.	AC=2;AF=1.00;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	1/1:0,884:1.00:884
chr17	655611	rs2251564	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	663472	rs77166377	C	A	9500.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr17	673895	rs2644706	C	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	680299	rs2273453	T	C	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	685752	rs2249542	G	A	14435.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr17	686589	rs35144249	C	CT	795.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-1.761;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:19,54:0.74:73
chr17	882474	.	A	AGGGCAGGGGTAACGGGCGTGGGGGGC	1481.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.09;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr17	910636	rs2586304	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	912914	rs12600864	G	A	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	925670	rs2586251	G	A	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	925764	rs2663345	A	G	6773.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,255:0.99:257
chr17	934832	rs11656924	G	A	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.29;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	934898	rs9903778	G	A	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.53;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	934930	rs146613429	G	T	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=25.52;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	934984	.	C	CGG	2499.73	.	AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=37.87;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	953456	rs2257540	C	T	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	953737	rs2257222	T	C	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	954003	rs11653072	C	G	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	960178	rs62069679	C	A	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	962184	rs62069680	A	G	20299.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.112;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=-0.162;SOR=0.316;set=HC	GT:AD:AF:DP	1/1:1,801:1.00:802
chr17	970251	rs2258097	T	C	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	970413	rs2262150	C	T	4396.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	975804	rs62067901	C	T	9128.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=43.68;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	975830	rs77792616	G	A	9774.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	976699	rs62067902	A	G	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	976711	rs2258893	T	C	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	1004061	rs76815113	C	G	6974.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	1012447	rs138356399	T	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=25.45;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	1083083	rs62070499	A	G	10383.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	1183464	rs6502776	A	G	26975.77	.	AC=2;AF=1.00;AN=2;DB;DP=1064;set=Intersection	GT:AD:AF:DP	1/1:0,1045:1.00:1045
chr17	1264611	.	T	TA	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=6.774;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.715;QD=1.25;ReadPosRankSum=3.092;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:122,33:0.21:155
chr17	1371818	rs8080389	C	T	9912.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr17	1373612	rs8081370	C	T	7840.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:2,304:0.99:306
chr17	1377878	rs2286871	T	C	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	1377943	rs2286873	A	G	11231.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr17	1378047	rs2286874	C	G	9881.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	1380955	rs2286875	G	T	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr17	1381005	rs2286876	T	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	1381521	rs45456691	T	C	5854.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr17	1384066	rs4790518	A	G	28124.77	.	AC=2;AF=1.00;AN=2;DB;DP=1103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,1086:1.00:1086
chr17	1387334	.	C	CA	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.816;QD=1.42;ReadPosRankSum=0.929;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:200,60:0.23:260
chr17	1387472	rs11538156	C	T	22788.77	.	AC=2;AF=1.00;AN=2;DB;DP=926;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.46;SOR=0.891;set=HC	GT:AD:AF:DP	1/1:0,895:1.00:895
chr17	1389072	rs189114107	C	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=25.28;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	1410184	rs141707414	CT	C	4855.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:4,167:0.98:171
chr17	1410457	rs78092914	G	C	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	1412455	rs5818804	GC	G	1793.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	1417231	rs61733750	A	C	12105.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr17	1419890	rs6502755	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	1424837	rs75616938	G	A	4320.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.277;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=-0.279;SOR=0.437;set=HC	GT:AD:AF:DP	1/1:1,167:0.99:168
chr17	1456318	rs2230463	G	A	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	1479741	rs6502794	A	G	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	1489088	rs4790208	C	G	14789.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr17	1490379	rs143498029	A	ACACTGCGTTTCCCG	3818.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr17	1490409	rs8078582	T	C	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.32;QD=29.40;SOR=2.480;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	1493972	rs7210368	T	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	1493999	rs7406591	G	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	1494027	rs4790668	T	C	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	1494567	rs12953268	G	A	7854.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	1516480	rs7219369	T	C	8758.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr17	1530979	rs5818816	G	GC	8548.73	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr17	1538546	rs4790250	C	T	14895.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr17	1538628	rs3744644	C	G	11370.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr17	1542153	rs2272012	G	A	12275.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr17	1542190	rs2272011	G	A	11977.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:1,467:1.00:468
chr17	1542803	rs34632795	GA	G	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.315;QD=1.52;ReadPosRankSum=-0.802;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr17	1550106	rs2293067	C	T	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	1578758	.	T	C	640.77	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	1584377	.	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-1.126;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr17	1611433	rs4790809	A	G	6962.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	1611545	rs4790810	A	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	1612683	.	CAAA	C	655.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.29;ReadPosRankSum=-0.408;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:5,29:0.85:34
chr17	1612777	rs11078594	G	C	15937.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr17	1630208	rs57207396	C	T	25989.77	.	AC=2;AF=1.00;AN=2;DB;DP=989;set=Intersection	GT:AD:AF:DP	1/1:0,981:1.00:981
chr17	1630395	rs59643265	T	C	9626.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr17	1630584	rs7221974	A	G	12125.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr17	1633868	rs62090047	C	T	17749.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,666:1.00:666
chr17	1635614	rs62090048	T	C	10557.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	1636934	rs3809870	A	G	13582.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:3,536:0.99:539
chr17	1637074	rs3809871	A	G	28052.77	.	AC=2;AF=1.00;AN=2;DB;DP=1095;set=Intersection	GT:AD:AF:DP	1/1:0,1085:1.00:1085
chr17	1637302	rs3809872	A	G	32277.77	.	AC=2;AF=1.00;AN=2;DB;DP=1238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,1215:1.00:1215
chr17	1639458	rs11549259	A	G	7566.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:3,317:0.99:320
chr17	1649267	rs7501729	A	G	14656.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr17	1651780	rs2277695	A	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	1657979	rs67887323	TG	T	1671.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	1673276	rs1136287	C	T	17082.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chr17	1673405	rs12603825	G	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	1674544	rs71375537	CT	C	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=11.957;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=6.83;ReadPosRankSum=0.764;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:14,29:0.67:43
chr17	1703543	rs3809875	G	C	21797.77	.	AC=2;AF=1.00;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	1/1:0,853:1.00:853
chr17	1704398	rs34564270	C	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	1707762	rs8067685	A	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	1707893	rs8072508	T	A	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	1715435	rs7503422	G	A	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	1731268	rs8067660	T	C	12784.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,500:1.00:500
chr17	1733210	rs17291738	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	1733399	rs5030749	A	G	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	1747830	rs137994107	C	T	13218.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr17	1748028	rs4790827	A	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	1761423	.	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.082;ClippingRankSum=0.000;DP=520;ExcessHet=3.0103;FS=4.114;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-13.892;QD=0.16;ReadPosRankSum=-1.965;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:483,34:0.07:517
chr17	1761425	.	C	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DP=534;ExcessHet=3.0103;FS=5.736;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-14.619;QD=0.17;ReadPosRankSum=-2.611;SOR=1.509;set=HC	GT:AD:AF:DP	0/1:493,38:0.07:531
chr17	1761431	rs3809874	T	C	17769.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.92;QD=28.12;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,632:1.00:632
chr17	1761436	.	A	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.615;ClippingRankSum=0.000;DP=684;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-17.175;QD=0.66;ReadPosRankSum=-1.174;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:632,49:0.07:681
chr17	1761445	.	C	T	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-17.173;QD=0.50;ReadPosRankSum=-0.901;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:695,60:0.08:755
chr17	1761447	.	G	A	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DP=776;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-16.855;QD=0.41;ReadPosRankSum=-0.301;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:713,60:0.08:773
chr17	1761457	.	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010;ClippingRankSum=0.000;DP=795;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-16.987;QD=0.32;ReadPosRankSum=1.121;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:731,61:0.08:792
chr17	1779216	rs375500915	CT	C	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.640;QD=7.75;ReadPosRankSum=1.689;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr17	1800217	rs7406062	G	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	1839674	rs9902457	G	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	1840468	rs9903800	C	T	9297.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr17	1936755	rs72809541	T	C	17923.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,677:1.00:677
chr17	1943888	rs2236375	T	C	20741.77	.	AC=2;AF=1.00;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	1/1:0,833:1.00:833
chr17	1945041	rs7216804	A	G	20940.77	.	AC=2;AF=1.00;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	1/1:0,809:1.00:809
chr17	1945225	rs869020	T	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	1945621	rs2015866	G	T	14870.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,581:1.00:581
chr17	1945694	rs55815331	C	T	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	1946503	rs1051322	C	G	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	1964759	rs145926620	C	CG	2196.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:17,101:0.86:118
chr17	1965085	rs7214308	C	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	1965096	rs12939002	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	1968983	rs2232486	T	C	12843.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr17	1985050	rs8076897	T	C	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	2195933	rs3215741	GA	G	10722.73	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=23.83;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,450:1.00:450
chr17	2196088	rs216206	C	T	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	2196150	rs216205	C	T	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	2200434	rs170043	A	C	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	2203025	rs1885987	T	G	15630.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.440;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.75;ReadPosRankSum=-0.903;SOR=0.248;set=HC	GT:AD:AF:DP	1/1:1,606:1.00:607
chr17	2203175	rs1885986	C	G	15979.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr17	2203348	rs216194	T	C	19497.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:0,752:1.00:752
chr17	2203453	rs216193	A	G	22672.77	.	AC=2;AF=1.00;AN=2;DB;DP=925;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,915:1.00:915
chr17	2222325	rs8081273	C	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	2238741	.	TA	T	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=5.797;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.194;QD=2.13;ReadPosRankSum=-0.144;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:120,60:0.33:180
chr17	2276432	rs2302470	C	T	7364.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	2290516	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=0.404;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:253,37:0.13:290
chr17	2297571	.	GCA	G	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.040;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:195,40:0.17:235
chr17	2310611	rs62067054	C	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	2318695	rs4790335	G	A	10203.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	2371000	rs10163513	G	A	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.76;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	2585113	rs6628	C	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	2595215	rs5818873	GC	G	6594.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	2595248	.	CCGCCA	C	5332.73	.	AC=2;AF=1.00;AN=2;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.04;SOR=4.097;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	2595266	.	GC	G	5452.73	.	AC=2;AF=1.00;AN=2;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.44;SOR=2.972;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	2595276	rs371974984	CCGCCA	C	5950.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.99;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	2595291	rs62068251	C	T	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	2597723	rs66960934	GCAGCGGGGACA	G	20069.73	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr17	2597947	rs113104780	C	G	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	2598627	rs1003398	T	C	28916.77	.	AC=2;AF=1.00;AN=2;DB;DP=1127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,1085:1.00:1085
chr17	2598639	rs1003399	C	G	28485.77	.	AC=2;AF=1.00;AN=2;DB;DP=1136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,1087:1.00:1087
chr17	2599612	rs2302200	C	G	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	2604375	rs758417	C	T	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	2605528	rs375237892	AAC	A	31.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,6:0.15:39
chr17	2606715	rs1065479	G	A	32949.77	.	AC=2;AF=1.00;AN=2;DB;DP=1297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,1273:1.00:1273
chr17	2607560	rs12953041	A	G	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	2699935	rs123059	T	C	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	2703721	rs72122107	GGGCTGTCCCGGGGACTCCTCCA	G	9110.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	2865789	rs34224666	A	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	2888212	rs12943691	G	A	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	2894569	rs8071529	C	G	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	2921210	rs60254420	CGT	C	468.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr17	2921251	rs8064800	A	G	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	2923597	rs2304981	C	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	2923767	rs2304982	A	G	11006.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:1,431:1.00:432
chr17	2924011	rs4790416	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	2929286	rs4072679	A	C	12998.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr17	2935591	rs4239039	T	C	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	2966032	rs202049082	C	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.82;QD=28.03;SOR=2.221;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	3100827	rs2241093	T	C	14504.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr17	3101076	rs2241092	G	C	7479.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	3101578	rs2241091	G	T	17951.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,678:1.00:678
chr17	3101691	rs12150427	G	T	11603.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	3119008	rs4325604	T	C	7458.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=26.17;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	3182309	rs2014057	G	T	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	3195503	rs703903	C	T	10472.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	3324004	rs146946227	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.97;QD=32.48;SOR=7.054;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	3324086	rs227788	G	A	166.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=27.81;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	3324255	rs769432	C	T	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.62;QD=26.65;SOR=1.497;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	3336162	rs11867612	T	C	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	3336260	rs61739591	A	G	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	3337057	rs769431	A	G	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr17	3349634	rs34586104	C	CTT	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	3352309	rs11556563	T	C	17130.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,679:1.00:679
chr17	3417123	rs906418	C	T	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	3418119	rs10579788	AGTT	A	4180.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	3419690	rs8082339	A	G	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	3422032	rs7216486	G	A	9919.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr17	3422077	rs12946883	G	A	8742.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr17	3424183	rs8079980	A	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	3430271	rs11657715	A	G	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	3445901	rs11078458	T	G	22786.77	.	AC=2;AF=1.00;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr17	3447914	rs1039519	C	T	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	3458072	rs322965	T	C	13203.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr17	3475367	rs224548	T	G	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr17	3475405	rs224549	C	T	8619.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr17	3475564	rs224550	CA	TC	17758.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	3476826	rs11441416	G	GC	10564.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.58;ReadPosRankSum=1.688;SOR=0.259;set=HC	GT:AD:AF:DP	1/1:1,236:1.00:237
chr17	3476832	rs2456855	A	C	11139.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.68;ReadPosRankSum=1.354;SOR=0.277;set=HC	GT:AD:AF:DP	1/1:1,260:1.00:261
chr17	3489249	rs3744686	C	T	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:1,186:0.99:187
chr17	3492002	rs161390	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	3492107	rs58427247	T	TA,TAA	2045.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.645;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.54;MQRankSum=2.129;QD=8.86;ReadPosRankSum=-0.086;SOR=0.620;set=HC	GT:AD:AF:DP	1/2:72,81,78:0.35,0.34:231
chr17	3492319	rs7220415	C	A	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	3493200	rs222747	C	G	28020.77	.	AC=2;AF=1.00;AN=2;DB;DP=1072;set=Intersection	GT:AD:AF:DP	1/1:0,1067:1.00:1067
chr17	3493533	rs161387	A	G	10994.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr17	3513719	rs465563	G	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	3514028	rs224496	G	C	19539.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:0,752:1.00:752
chr17	3553526	rs161350	A	G	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	3558417	rs459613	C	G	10969.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr17	3558698	rs467277	G	A	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	3558698	.	GCG	ACA	1656	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=12;NR=31;PP=1656;QD=39.7550668573;SC=TAGGAGCAGGGCGTTCCAGCA;SbPval=0.51;Source=Platypus;TC=44;TCF=12;TCR=32;TR=43;WE=3558708;WS=3558688;set=Platypus	GT:AD:AF:DP	1/1:1,43:0.98:44
chr17	3558700	rs12938401	G	A	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.98;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	3559823	rs1800528	G	A	14122.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr17	3561396	rs161400	C	T	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr17	3564068	rs760273	G	A	11308.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	3564073	rs3826496	A	G	11124.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.16;SOR=1.183;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	3564084	rs760274	T	C	9047.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	3566857	rs11541134	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	3567461	rs2235107	G	A	13824.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.020;set=HC	GT:AD:AF:DP	1/1:0,539:1.00:539
chr17	3568012	rs8278	A	G	11589.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr17	3593074	rs220486	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	3594276	rs3215407	TG	T	12963.73	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=32.09;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr17	3618298	rs1367950	C	T	8084.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr17	3620138	rs2293881	A	G	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	3627473	rs9907144	C	T	28622.77	.	AC=2;AF=1.00;AN=2;DB;DP=1105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,1079:1.00:1079
chr17	3628362	rs3809806	T	C	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	3629698	rs170208	A	G	6656.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	3631118	rs2915558	T	C	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	3631241	rs2976230	A	G	19266.77	.	AC=2;AF=1.00;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	1/1:0,763:1.00:763
chr17	3631473	rs7219600	C	G	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	3634629	rs199875607	CTTTTTTTTTTT	C	2283.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.338;QD=33.10;ReadPosRankSum=1.253;SOR=3.294;set=HC	GT:AD:AF:DP	1/1:3,66:0.96:69
chr17	3635645	rs170209	A	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	3638037	rs184335	C	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	3638344	rs9674606	G	A	8307.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	3646977	rs10642081	C	CTT	561.92	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:2,21:0.91:23
chr17	3649214	rs1183610	G	A	12187.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:1,476:1.00:477
chr17	3657159	rs2272606	C	T	43855.77	.	AC=2;AF=1.00;AN=2;DB;DP=1032;set=Intersection	GT:AD:AF:DP	1/1:0,1025:1.00:1025
chr17	3657175	rs220479	T	C	42348.77	.	AC=2;AF=1.00;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	1/1:0,960:1.00:960
chr17	3658358	rs3833165	A	AGGCCCCGCCCTCATCAGGT	6562.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.817;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=0.210;QD=63.10;ReadPosRankSum=-0.818;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:2,102:0.98:104
chr17	3664477	rs10687117	A	AATT	7102.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	3665116	rs8080482	A	G	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	3665160	rs220471	C	G	10907.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr17	3687533	rs55722017	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	3746537	rs5818919	C	CT	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.747;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:58,29:0.33:87
chr17	3773302	rs116485976	A	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	3785618	rs74582253	G	A	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr17	3785901	rs113704424	G	A	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	3786231	rs9912447	CA	TC	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	3786804	rs737361	C	G	5380.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	3786994	rs72825475	A	T	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	3787223	rs56101368	G	A	30892.77	.	AC=2;AF=1.00;AN=2;DB;DP=1219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,1195:1.00:1195
chr17	3787726	rs3809803	G	A	23038.77	.	AC=2;AF=1.00;AN=2;DB;DP=900;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,882:1.00:882
chr17	3803060	rs371312141	C	G	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	3806664	rs7219732	T	A	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	3807044	rs740794	T	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	3808032	rs2074989	A	G	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	3808713	rs2074988	T	C	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	3818620	rs10852862	T	C	26355.77	.	AC=2;AF=1.00;AN=2;DB;DP=1039;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,1025:1.00:1025
chr17	3818788	rs2875751	G	A	14026.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr17	3818830	rs2325788	A	G	13856.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr17	3819002	rs11078475	T	C	11810.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr17	3828086	rs1043246	C	G	17940.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,723:1.00:723
chr17	3828702	rs887387	T	C	11813.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr17	3828822	rs1076902	C	T	10572.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.587;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.11;ReadPosRankSum=0.342;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:2,419:1.00:421
chr17	3832182	rs9747965	G	A	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	3833500	.	C	T	1049	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=1;MGOF=21;MMLQ=25;MQ=57.3;NF=29;NR=3;PP=1049;QD=33.8678503921;SC=GCGCCCAGCCCACCTGGACCC;SbPval=0.98;Source=Platypus;TC=71;TCF=54;TCR=17;TR=32;WE=3833509;WS=3833490;set=Platypus	GT:AD:AF:DP	0/1:39,32:0.45:71
chr17	3833563	.	G	A	2965	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=1;MGOF=4;MMLQ=28;MQ=59.31;NF=100;NR=98;PP=2965;QD=20;SC=CCCACTCCTCGGCCCCAGCTC;SbPval=0.53;Source=Platypus;TC=198;TCF=100;TCR=98;TR=198;WE=3833571;WS=3833553;set=Platypus	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	3838626	rs2074991	T	C	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	3839685	rs1062683	G	A	11019.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,431:1.00:431
chr17	3839829	rs17846891	C	T	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	3840686	rs36057213	A	C	8292.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	3840694	rs34866939	GA	G	8660.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	3840928	rs3179783	A	G	12316.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	3844671	rs55858476	G	A	36905.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=1455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=37.802;QD=25.84;ReadPosRankSum=1.466;SOR=0.385;set=HC	GT:AD:AF:DP	1/1:1,1427:1.00:1428
chr17	3844985	rs17846890	A	C	6548.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	3845927	rs17846889	A	G	9833.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	3846675	rs71366582	C	T	11880.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.46;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr17	3846802	rs758641	A	G	22804.77	.	AC=2;AF=1.00;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	1/1:0,893:1.00:893
chr17	3846891	rs146621763	TG	T	9457.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	3846899	rs757611	C	A	9190.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	3848013	rs1800911	A	C	11106.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr17	3856615	rs1800915	A	G	13164.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr17	3867571	rs887384	A	G	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	3916823	rs8075562	G	A	8943.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr17	3921307	rs2247194	C	G	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	3922918	rs711178	A	G	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	3923129	rs2290438	G	T	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	3935370	rs968114	G	C	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	3936043	rs17175962	C	T	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	3947533	rs1006954	G	A	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	3947644	rs781831	T	C	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	3953083	rs781853	T	C	9731.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr17	3953102	rs781852	A	G	8618.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr17	3961489	rs781839	C	T	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	3962428	rs34838830	A	AT	2001.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=24.41;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	3966064	rs781825	A	G	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	3968149	rs71383514	G	GA,GAA	1459.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.687;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.000;QD=18.71;ReadPosRankSum=-0.929;SOR=1.211;set=HC	GT:AD:AF:DP	1/2:6,48,24:0.62,0.31:78
chr17	3969527	rs9892466	T	A	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	3970408	rs9893302	C	T	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	3976075	rs781820	C	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.96;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	3979907	rs8065054	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	3979982	rs8065185	G	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	3980318	rs897026	T	C	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	3981148	rs8074454	G	C	12494.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	3985864	rs8068804	G	A	17003.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr17	3989636	.	AGCG	A	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=11.369;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=-1.168;QD=8.97;ReadPosRankSum=0.871;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr17	3989642	.	AATCCCTTTCTGGGGGATTCCCACAGCG	A	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=10.399;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-1.347;QD=9.78;ReadPosRankSum=-0.739;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr17	3989669	.	G	A	580	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=27;MQ=60.28;NF=20;NR=14;PP=580;QD=18.0815062514;SC=TTCCCACAGCGGCAATCCCTT;SbPval=0.56;Source=Platypus;TC=34;TCF=20;TCR=14;TR=34;WE=3989677;WS=3989659;set=Platypus	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	4005576	rs62071004	C	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	4005770	rs1869493	T	C	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr17	4007875	rs9907500	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	4008021	rs7222392	T	C	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	4027047	rs7225521	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	4027152	rs7214284	T	C	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	4027392	rs7208760	G	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	4027411	rs7214779	T	C	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	4045809	rs4239043	T	C	14829.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:2,557:1.00:559
chr17	4046270	rs1454122	T	C	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	4053092	rs138353200	C	CA	2050.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:14,108:0.89:122
chr17	4074261	rs897030	A	C	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	4077485	rs4790585	G	A	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	4083242	rs9915922	T	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	4088291	rs2020118	C	T	7291.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	4098573	rs5818941	A	AT	5959.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.67;ReadPosRankSum=1.351;SOR=0.683;set=HC	GT:AD:AF:DP	1/1:22,281:0.93:303
chr17	4145774	rs12944876	G	A	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	4145818	rs12709336	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	4192401	rs71144179	T	TAC	1258.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr17	4343150	rs3809852	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	4350182	rs2047233	T	C	10896.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr17	4350367	rs2047232	A	G	15630.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr17	4350373	rs3055435	GGT	G	9348.73	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:3,308:0.99:311
chr17	4350407	rs2047231	G	C	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr17	4351396	rs6502786	C	T	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	4351640	rs884250	G	A	28553.77	.	AC=2;AF=1.00;AN=2;DB;DP=1142;set=Intersection	GT:AD:AF:DP	1/1:3,1121:1.00:1124
chr17	4352636	rs34457931	G	A	15844.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,607:1.00:607
chr17	4402803	rs184566	T	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	4416635	rs77483673	C	A	17673.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:1,688:1.00:689
chr17	4416674	rs7214270	T	C	21451.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:1,844:1.00:845
chr17	4436005	rs9892232	T	C	9546.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr17	4437214	rs4790202	C	T	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	4439313	rs1077200	A	G	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	4439497	rs12945732	A	G	26281.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.909;ClippingRankSum=0.000;DB;DP=1034;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=0.181;SOR=0.403;set=HC	GT:AD:AF:DP	1/1:3,1014:1.00:1017
chr17	4439501	rs1076071	C	G	45593.77	.	AC=2;AF=1.00;AN=2;DB;DP=1057;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,1035:1.00:1035
chr17	4439727	rs146210718	T	TGG	9381.73	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr17	4448853	rs2306267	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	4452509	rs141173826	C	G	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	4455500	rs7206974	T	C	32400.77	.	AC=2;AF=1.00;AN=2;DB;DP=1279;set=Intersection	GT:AD:AF:DP	1/1:0,1258:1.00:1258
chr17	4458302	rs1871348	C	A	31386.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.876;ClippingRankSum=0.000;DB;DP=1283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-0.624;SOR=0.407;set=HC	GT:AD:AF:DP	1/1:1,1227:1.00:1228
chr17	4458314	rs1871347	C	T	26839.77	.	AC=2;AF=1.00;AN=2;DB;DP=1085;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,1034:1.00:1034
chr17	4463023	rs11657054	G	A	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr17	4497160	rs8080130	T	C	12822.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr17	4498682	rs4790655	C	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	4500072	rs9906333	A	G	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	4500304	rs72634012	C	T	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	4510600	rs35090819	C	CT	10436.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	4534834	rs916055	A	G	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	4541744	rs899452	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	4542717	rs11078528	G	A	11860.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:10,471:0.98:481
chr17	4544729	rs9906597	A	G	6787.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	4544978	rs369435246	G	GAGA	7521.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	4545581	rs2255888	C	T	9401.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr17	4575283	rs3862485	A	G	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	4577112	rs11658808	G	A	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	4578007	rs4790673	C	G	34050.77	.	AC=2;AF=1.00;AN=2;DB;DP=1308;set=Intersection	GT:AD:AF:DP	1/1:0,1289:1.00:1289
chr17	4579638	rs8071990	G	A	8285.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr17	4580137	rs6502806	A	G	10492.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr17	4580224	rs11078530	C	T	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	4586253	rs34352526	GA	G	3922.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	4594847	rs7226084	T	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	4620497	rs7208257	C	T	16403.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,630:1.00:630
chr17	4622071	rs2036656	C	G	3382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.939;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.728;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=0.000;QD=33.49;ReadPosRankSum=-0.738;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,100:0.99:101
chr17	4622077	rs11463798	C	CT	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.253;SOR=1.264;set=HC	GT:AD:AF:DP	0/1:33,29:0.47:62
chr17	4622638	rs1045280	C	T	33726.77	.	AC=2;AF=1.00;AN=2;DB;DP=1320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,1305:1.00:1305
chr17	4636565	rs8123	T	G	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	4638010	rs3744700	T	G	15057.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr17	4644491	rs9903643	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	4645324	rs3826517	T	C	16774.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr17	4646480	rs12451720	C	T	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	4646533	rs369534237	C	CA,CAA	3263.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=5.023;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.000;QD=21.19;ReadPosRankSum=-0.425;SOR=1.082;set=HC	GT:AD:AF:DP	1/2:13,29,112:0.19,0.73:154
chr17	4647002	rs8082690	A	G	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	4649030	.	G	GCCCCTGGGAGCCCCGA	5930.73	.	AC=2;AF=1.00;AN=2;DP=123;set=Intersection	GT:AD:AF:DP	1/1:3,106:0.97:109
chr17	4686340	rs3853643	TT	GG	25328.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr17	4688996	rs2279962	A	C	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr17	4693054	rs12951761	G	A	38325.77	.	AC=2;AF=1.00;AN=2;DB;DP=1466;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,1452:1.00:1452
chr17	4693170	rs34850425	T	C	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	4693342	rs35910358	C	A	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	4693508	rs34421346	G	C	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	4710957	rs3867173	G	T	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	4712563	.	GTC	G	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DP=469;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-1.328;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:383,46:0.11:429
chr17	4712757	rs2286671	G	A	13104.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr17	4714021	rs3081314	G	GGAAA	11216.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=45.78;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	4718776	rs1132448	G	A	7290.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	4720131	rs2302325	C	G	14373.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr17	4722299	rs2326097	T	C	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	4722785	rs1052751	G	A	22602.77	.	AC=2;AF=1.00;AN=2;DB;DP=901;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,892:1.00:892
chr17	4724936	rs4790233	T	G	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.20;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	4724942	rs4790234	A	G	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	4725920	rs2875840	T	C	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	4758174	rs73341669	C	A	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	4758244	rs12602414	A	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	4778487	rs8078776	G	A	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	4787720	rs6502827	C	T	7863.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	4795307	rs2586532	C	T	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	4796656	rs2302320	T	C	21710.77	.	AC=2;AF=1.00;AN=2;DB;DP=856;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.00;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,835:1.00:835
chr17	4835852	rs81663	A	T	8751.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr17	4836673	rs6066	C	T	9071.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	4837171	.	GGAGCCCACCTCAGAGCCCGCCCCCAGCCCGACCACCCCA	G	7831.73	.	AC=2;AF=1.00;AN=2;DP=569;set=Intersection	GT:AD:AF:DP	1/1:111,242:0.69:353
chr17	4837952	rs199616811	A	AG	928.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	4845768	rs238247	G	A	12244.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.78;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,475:1.00:475
chr17	4856376	rs238238	A	G	13775.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr17	4856580	rs238239	T	C	11797.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.26;ReadPosRankSum=1.850;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:2,465:1.00:467
chr17	4856812	rs238240	C	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	4859102	.	T	TTGTCTCTGCTC	2740.73	.	AC=2;AF=1.00;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr17	4859134	.	C	T	1084	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=2;HapScore=1;MGOF=67;MMLQ=26;MQ=63.38;NF=6;NR=7;PP=1084;QD=86.0593240421;SC=CTGTCTCTGCCCTGTCTCTGC;SbPval=0.2;Source=Platypus;TC=39;TCF=12;TCR=27;TR=13;WE=4859142;WS=4859124;set=Platypus	GT:AD:AF:DP	1/1:26,13:0.33:39
chr17	4859156	.	CCTGTCTCTGCT	TCTGTCTCTGCT	172	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=42;MMLQ=26;MQ=57.91;NF=0,9;NR=9,10;PP=172,118;QD=20.2222222222;SC=CTGTCTCTGCCCTGTCTCTGC;SbPval=1.0;Source=Platypus;TC=36;TCF=9;TCR=27;TR=9,19;WE=4859175;WS=4859154;set=Platypus	GT:AD:AF:DP	0/1:13,19:0.59:32
chr17	4859156	.	CCTGTCTCTGCT	C	504.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:1,16:0.94:17
chr17	4863410	rs238224	A	G	12532.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:1,484:1.00:485
chr17	4875566	rs238230	T	C	23980.77	.	AC=2;AF=1.00;AN=2;DB;DP=968;set=Intersection	GT:AD:AF:DP	1/1:0,953:1.00:953
chr17	4877120	rs238229	G	A	17219.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:1,670:1.00:671
chr17	4881776	rs376516	C	G	11223.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr17	4882952	rs1859434	G	A	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.344;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	4883818	rs238234	C	G	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	4885982	rs238233	G	A	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	4886037	rs238232	A	G	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	4890843	rs8071428	T	C	7139.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:3,263:0.99:266
chr17	4891956	rs426475	G	A	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	4893357	rs427703	G	C	9441.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr17	4906146	rs10533622	GC	G	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.808;QD=3.29;ReadPosRankSum=-0.625;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr17	4907989	rs391271	A	G	11373.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr17	4926882	rs346828	A	G	10213.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:3,396:0.99:399
chr17	4936972	rs346821	G	A	17657.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:1,666:1.00:667
chr17	4937575	rs346822	T	C	30929.77	.	AC=2;AF=1.00;AN=2;DB;DP=1205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.99;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,1190:1.00:1190
chr17	4937982	rs346824	T	C	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	5036148	.	T	C	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-9.272;QD=3.39;ReadPosRankSum=-4.788;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:83,13:0.14:96
chr17	5036152	.	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-9.673;QD=2.69;ReadPosRankSum=-3.787;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:95,16:0.14:111
chr17	5036161	rs73976312	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-10.359;QD=1.51;ReadPosRankSum=-1.344;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:126,18:0.12:144
chr17	5036191	rs75631218	G	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-8.037;QD=0.82;ReadPosRankSum=-5.414;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:274,48:0.15:322
chr17	5036205	rs80328123	A	C	3024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.571;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-14.049;QD=7.45;ReadPosRankSum=-0.279;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:314,92:0.23:406
chr17	5036210	.	TC	GT	3341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.780;ClippingRankSum=0.000;DP=434;ExcessHet=3.0103;FS=3.037;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-14.084;QD=7.70;ReadPosRankSum=0.489;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:335,99:0.23:434
chr17	5036214	rs114647990	C	T	3832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.802;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-13.628;QD=8.31;ReadPosRankSum=0.232;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:351,110:0.24:461
chr17	5036224	rs72830922	C	G	4216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-12.716;QD=8.09;ReadPosRankSum=-1.639;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:376,145:0.28:521
chr17	5036274	rs78465432	C	A	5883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-10.731;QD=10.76;ReadPosRankSum=-0.546;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:376,171:0.31:547
chr17	5036281	rs76236903	G	C	5744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-9.821;QD=11.03;ReadPosRankSum=-0.870;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:357,164:0.31:521
chr17	5036329	rs72830923	A	G	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:189,76:0.29:265
chr17	5036383	rs76207017	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:58,21:0.27:79
chr17	5048207	rs2304447	A	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	5058808	rs9899177	G	A	21906.77	.	AC=2;AF=1.00;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	1/1:0,847:1.00:847
chr17	5066305	rs2307138	A	T	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	5084763	rs1689965	G	A	18245.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:1,688:1.00:689
chr17	5085893	rs4115657	C	T	21917.77	.	AC=2;AF=1.00;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	1/1:0,827:1.00:827
chr17	5087040	rs9908414	A	G	7282.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	5087602	rs2641232	C	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	5124352	rs137985713	C	CA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.041;QD=0.97;ReadPosRankSum=0.554;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr17	5126674	rs2641256	A	G	19685.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr17	5126689	rs2585271	G	A	20371.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	5126876	rs2641255	C	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	5268356	rs71151866	TA	T	537.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr17	5317199	rs72839514	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	5328659	.	CT	C	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.801;QD=1.18;ReadPosRankSum=-0.153;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:161,59:0.27:220
chr17	5334804	.	TA	T	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=3.755;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=3.318;QD=1.19;ReadPosRankSum=-0.552;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:74,29:0.28:103
chr17	5338093	rs59609565	AT	A	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.803;QD=0.97;ReadPosRankSum=0.629;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr17	5384551	rs1805449	T	C	6400.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	5436520	rs72827627	C	T	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	5487164	rs884367	C	G	15251.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr17	5991344	rs2302836	C	T	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	6014176	rs2302837	A	G	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	6021541	rs2302838	C	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	6330068	rs2292546	T	C	24644.77	.	AC=2;AF=1.00;AN=2;DB;DP=976;set=Intersection	GT:AD:AF:DP	1/1:0,962:1.00:962
chr17	6331803	rs8075035	T	C	15765.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:1,588:1.00:589
chr17	6331836	rs12453262	T	G	12600.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr17	6353679	rs7218283	A	C	7772.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	6364753	rs11654099	A	G	16316.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr17	6377999	rs79010537	G	A	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	6406731	rs3809836	T	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	6483046	rs3744720	T	C	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	6493056	rs367918	T	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	6493198	rs1443417	T	C	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	6511781	rs4796519	A	G	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	6515387	rs2289642	A	G	18599.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,734:1.00:734
chr17	6515454	rs2289643	C	T	8828.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	6524358	rs8074991	G	A	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	6531648	rs2072149	A	G	9612.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:1,373:1.00:374
chr17	6545464	rs2285998	G	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	6546259	rs2285999	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	6555546	rs56268735	C	CG	25710.73	.	AC=2;AF=1.00;AN=2;DB;DP=1036;set=Intersection	GT:AD:AF:DP	1/1:2,969:1.00:971
chr17	6558645	rs8077691	G	A	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	6558768	rs8078913	C	T	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.77;SOR=5.856;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	6562141	rs17842437	G	A	200.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.87;MQRankSum=-0.967;QD=22.25;ReadPosRankSum=0.589;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr17	6594014	rs218697	C	T	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	6596497	.	A	AACACACAC,AACACACACAC	1617.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.84;QD=42.57;SOR=2.235;set=HC	GT:AD:AF:DP	1/2:0,13,25:0.34,0.66:38
chr17	6662948	.	GGT	G	203.73	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr17	6899559	rs312467	C	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	6900383	rs312468	T	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	6902179	rs312470	G	A	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	6904934	rs434473	A	G	14376.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr17	6913652	rs312462	G	A	12242.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr17	6915401	rs2271316	C	G	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	6919093	rs14309	T	C	16540.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:1,638:1.00:639
chr17	6919707	rs146277727	G	A	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	6927350	rs312461	A	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	6928019	rs146207245	C	CCAG	8963.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:16,225:0.93:241
chr17	6929924	rs379478	T	C	6560.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	6933217	rs421264	T	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	6979179	rs364569	A	G	10669.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr17	6979218	rs3830425	AATAGG	A	11034.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	6981353	rs732828	G	C	13351.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr17	6981397	rs90951	A	G	8583.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	6981851	.	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr17	7080111	rs34652175	TCA	T	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.222;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:78,15:0.16:93
chr17	7094783	rs112846923	C	CA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.989;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr17	7131117	rs77934771	G	A	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	7139238	rs222851	G	A	14023.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr17	7140606	rs222852	A	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.62;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	7145492	rs58574748	C	CA	5122.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	7185788	rs222848	T	C	13914.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,539:1.00:539
chr17	7197633	rs8069533	A	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	7197794	rs222859	C	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.26;QD=24.09;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	7217944	rs62059197	G	A	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	7225425	rs2062771	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	7254315	rs35985803	G	A	10575.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.94;ReadPosRankSum=-0.894;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:2,422:1.00:424
chr17	7259073	rs6503016	C	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	7259083	rs144825300	A	AG	645.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	7290833	rs117334055	G	A	3771.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	7292107	rs6503018	G	A	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	7293715	rs3744549	C	T	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=26.32;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	7297452	rs4613118	A	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	7307103	rs56134360	ACC	A	3410.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	7307287	rs9900153	T	C	16163.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,609:1.00:609
chr17	7317647	rs60631713	A	AC	3988.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.170;QD=25.25;ReadPosRankSum=0.910;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:2,156:0.99:158
chr17	7318396	rs2241233	C	T	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	7318559	rs6503019	G	A	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	7320142	rs3752031	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	7329632	rs13290	T	G	15647.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr17	7349622	.	T	TTGTG	149.14	.	AC=1;AF=0.500;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.31;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr17	7350544	rs2302767	G	A	5625.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	7350975	rs2302765	T	C	5833.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.859;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.59;ReadPosRankSum=1.267;SOR=0.257;set=HC	GT:AD:AF:DP	1/1:1,227:1.00:228
chr17	7358803	rs7214344	G	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	7358861	rs2302762	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	7359277	rs2302763	T	C	4672.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	7366651	rs871990	C	G	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	7385174	rs8065577	G	C	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	7385454	rs3760422	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	7400041	rs9890920	C	T	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	7400137	rs9898024	T	C	8597.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:1,334:1.00:335
chr17	7402556	rs2277638	G	A	10302.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr17	7402600	rs2228129	T	C	11220.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr17	7403942	rs12936464	A	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	7404107	rs7217707	T	C	11009.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr17	7404209	rs6503030	G	A	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	7404991	rs2228130	T	C	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	7405074	rs8075218	C	T	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	7405937	rs2071504	C	T	7168.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr17	7406049	rs9910214	C	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	7406343	rs9890028	T	C	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	7411855	rs4796432	A	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	7412212	rs9889368	A	G	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	7413057	rs7213878	C	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	7413120	rs7218412	A	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	7416683	rs9894023	A	G	45751.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=1849;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.075;QD=25.52;ReadPosRankSum=0.008;SOR=0.237;set=HC	GT:AD:AF:DP	1/1:4,1789:1.00:1793
chr17	7417086	rs4344809	G	A	28179.77	.	AC=2;AF=1.00;AN=2;DB;DP=1100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,1087:1.00:1087
chr17	7417551	rs9533	T	C	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	7452977	rs9899183	C	T	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	7460559	rs4968189	T	G	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	7463362	.	C	A	5602.77	.	AC=2;AF=1.00;AN=2;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	7463644	rs72154130	TCAA	T	4373.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	7464413	rs6608	C	T	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	7468216	rs4968212	T	C	8865.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	7470285	rs58837213	CA	C	3975.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	7474277	rs4968213	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	7477938	rs1057086	G	C	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.23;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	7480547	rs2270341	T	A	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	7484101	rs9901673	C	A	8820.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	7484812	rs9901675	G	A	15009.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr17	7489417	rs74336587	C	T	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	7490379	rs2302661	G	C	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	7490810	rs10852891	G	A	10478.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr17	7499382	rs858526	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	7504858	rs17643401	G	A	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	7529902	rs13894	G	A	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	7533901	rs9913778	C	T	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=26.60;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	7536690	rs35338190	C	CT	2495.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	7557419	rs1642763	A	G	10060.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	7559037	rs55831773	C	T	8403.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	7577407	rs12951053	A	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	7577427	rs12947788	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	7578115	rs1625895	T	C	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	7578473	.	G	GC	6102.73	.	AC=2;AF=1.00;AN=2;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	7578645	rs2909430	C	T	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	7578711	rs141204613	CTTT	C	346.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	7579643	rs146534833	CCCCCAGCCCTCCAGGT	C	11040.73	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	7580500	rs12944939	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	7592168	rs2287499	C	G	8280.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	7592560	rs2287498	C	T	9701.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	7592780	rs2287497	G	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	7606722	rs7640	C	G	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:4,233:0.98:237
chr17	7646166	rs2642160	A	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	7673928	rs9909288	C	G	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	7674850	rs7212989	C	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	7677927	rs4791759	A	G	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	7681412	rs7359662	C	G	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	7682605	rs17806045	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	7700712	rs1565817	C	T	15647.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,608:1.00:608
chr17	7702357	rs12949280	C	T	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	7705089	rs4791834	C	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	7708096	rs9889268	G	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	7720091	rs11078708	G	C	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	7726665	rs55758061	C	CAG,CAGAG	721.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.304;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.60;ReadPosRankSum=-0.426;SOR=0.662;set=HC	GT:AD:AF:DP	1/2:3,10,28:0.24,0.68:41
chr17	7733555	rs7405476	A	G	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	7734174	rs142411344	G	A	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	7735063	rs57985356	T	G	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	7735934	rs61745181	G	A	6657.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	7750177	.	TACCACC	T	16005.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0.000;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.179;QD=44.21;ReadPosRankSum=0.900;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:3,359:0.99:362
chr17	7750232	rs11078709	T	C	14947.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr17	7750847	rs2270517	T	C	10365.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr17	7751050	rs62059713	C	T	6989.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.799;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=11.132;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.70;ReadPosRankSum=1.263;SOR=0.662;set=HC	GT:AD:AF:DP	1/1:3,280:0.99:283
chr17	7751778	rs3744249	G	A	11343.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr17	7751858	rs377654044	TCACCAC	T	15448.73	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:5,356:0.99:361
chr17	7760397	rs4724	G	A	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	7760704	rs8522	A	G	26936.77	.	AC=2;AF=1.00;AN=2;DB;DP=1090;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,1064:1.00:1064
chr17	7761512	rs12453250	C	A	8916.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,345:0.99:347
chr17	7788145	.	CGAG	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=1.236;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr17	7788409	rs201772788	C	G	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.44;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	7788427	rs191420949	C	A	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	7794202	rs12450454	C	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	7801509	rs9889962	C	A	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	7804405	rs62062524	G	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	7806529	rs7222046	A	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	7811876	rs112421907	C	CA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=6.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.646;SOR=1.386;set=HC	GT:AD:AF:DP	0/1:94,23:0.20:117
chr17	7811998	rs4239111	T	C	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	7812870	rs5819185	CA	C	1156.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=38.56;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	7828275	rs4444395	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	7828558	rs10852894	G	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	7828870	rs4396585	G	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.875;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr17	7830610	rs9908139	G	A	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr17	7832766	rs9898955	A	G	6393.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	7840679	rs4791987	G	A	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	7843053	rs11078719	C	T	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	7846684	rs7207022	G	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	7847955	rs11650083	C	A	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	7849087	rs4462665	C	G	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	7852528	rs7211792	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	7852887	rs7217194	T	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	7906519	rs61749665	G	T	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	7918490	rs3813585	T	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	7942434	rs73972649	A	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	7942901	rs76589243	C	G	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	7945593	rs7503115	G	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	7961115	rs7214969	G	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	7976302	.	GC	G	876.73	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	7977105	rs12937410	A	G	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	7979463	rs2289586	A	G	13873.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr17	7980189	rs143542368	TCCCCAGATGCC	T	217.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	7990555	.	GAC	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=5.032;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.807;QD=0.58;ReadPosRankSum=0.054;SOR=0.226;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chr17	7991330	rs9909784	T	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	8027593	rs3027279	G	T	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	8046772	rs2585405	C	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	8048169	rs2253820	T	C	4087.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	8048283	rs2735611	G	A	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	8050737	rs885747	G	C	9394.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr17	8052525	rs147233293	CAAAAACA	C	2395.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=62.93;MQRankSum=0.668;QD=38.03;ReadPosRankSum=1.568;SOR=1.491;set=HC	GT:AD:AF:DP	1/1:1,62:0.98:63
chr17	8064083	rs1061032	T	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	8066107	rs2304909	G	A	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	8076778	rs9894790	C	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	8076802	rs9901637	T	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	8076911	rs11655582	A	G	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	8076916	rs11650713	C	T	5985.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	8079029	rs8064449	G	C	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	8092694	rs8531	T	G	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	8108331	rs1059476	A	G	8358.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.94;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	8108339	rs2241909	G	A	8579.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	8110764	rs2289590	C	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	8132763	rs3826543	T	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	8135061	rs3027238	T	C	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	8137737	rs4792621	G	A	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	8139327	rs4791626	A	G	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	8141707	rs6503093	T	C	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	8157310	rs9891699	C	T	10305.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr17	8158273	rs6503094	A	G	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	8159232	rs7221716	A	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	8161149	rs4791641	C	T	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	8166378	rs7206953	T	C	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	8167600	rs11078738	T	C	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	8168224	rs9902252	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	8168805	rs9897842	A	G	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	8169006	rs11655563	T	C	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	8194318	rs72835272	GT	AC	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	8216468	rs871841	T	C	21429.77	.	AC=2;AF=1.00;AN=2;DB;DP=835;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,820:1.00:820
chr17	8219478	rs2270445	A	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	8224133	rs3744646	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	8224276	rs3744647	T	C	9350.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr17	8243469	rs12943505	T	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	8243661	rs12601097	G	A	6597.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	8243785	rs12936935	A	G	1573.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.98;ReadPosRankSum=-1.185;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:2,61:0.97:63
chr17	8296440	rs12601265	G	A	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	8339103	rs8065181	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	8339283	rs3744652	C	T	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.85;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	8339307	rs8064417	G	A	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.98;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	8349984	rs369297844	T	TC	353.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	8383253	rs4791316	G	C	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	8383344	rs3215073	G	GC	2062.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	8383894	rs6503120	A	G	4259.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	8384875	rs904417	T	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	8387438	rs113838551	G	GATGA	1805.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.30;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	8390655	rs7219356	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	8393900	rs2270744	G	C	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	8393979	rs2270743	C	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	8395894	rs904416	T	C	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	8396010	rs3744653	A	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	8397315	rs2277670	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	8412133	rs9889907	A	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	8413358	rs145464629	A	ATT	1111.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.84;ReadPosRankSum=0.633;SOR=0.337;set=HC	GT:AD:AF:DP	1/1:5,54:0.92:59
chr17	8416901	rs11374	C	T	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	8417006	rs66631876	GT	G	1931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.498;QD=10.67;ReadPosRankSum=2.135;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:40,141:0.78:181
chr17	8424270	rs8067456	G	A	4680.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	8449767	rs4791724	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	8451744	rs57472344	GA	G	184.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=16.79;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	8455532	rs883811	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	8473182	rs422173	G	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	8478586	rs10573578	CAAT	C	2012.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=43.76;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	8478605	rs268460	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	8645010	rs79895013	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	8647181	rs9902109	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	8647337	rs7218546	A	G	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	8725214	rs56322041	A	AG	8622.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	8726160	rs2074258	A	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	8784361	rs4791765	A	G	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	8784900	rs376963225	C	CAGTA	3516.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	8790074	rs11078770	G	A	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	8792003	rs9915880	C	T	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	8792029	rs381309	A	G	6989.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	8792093	rs16957702	G	A	9333.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	8792171	rs11650737	T	C	7360.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	8792326	rs11654380	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	8792371	rs11654094	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	8792514	rs394811	G	A	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	8793905	rs365024	T	C	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	8794002	rs364676	T	C	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	8794009	rs61759652	T	A	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	8794014	rs381198	A	G	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	8809148	.	CT	C	87.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.312;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=0.255;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr17	8812683	rs181534	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	9066001	rs2072321	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	9066063	.	G	A	2137.77	.	AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=24.86;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	9066098	rs2286510	C	T	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.61;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	9086338	rs11078789	G	T	6074.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.476;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	9142846	rs56235417	G	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	9154103	rs2072322	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	9395033	rs6503214	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	9395231	rs9893664	G	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	9408594	rs2249929	A	C	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	9408609	rs2125348	A	G	175.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	9471711	rs1133295	T	G	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.66;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	9479048	rs7210038	T	C	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	9479098	rs7224817	C	A	7333.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	9479364	rs6503230	T	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	9515777	rs6503235	G	A	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	9712092	rs56256681	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	9712255	rs9908677	G	A	6906.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	9714009	rs4079466	C	A	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	9801299	.	ATG	A	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.510;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr17	10205067	rs2008528	C	T	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	10213263	rs200963267	A	AT	37.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.489;QD=3.79;ReadPosRankSum=1.292;SOR=1.901;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr17	10214628	rs2074867	C	T	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	10216442	rs4239113	C	A	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	10216510	rs4791401	G	A	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=26.06;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	10219366	rs2240577	C	T	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	10219470	rs2240578	A	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	10222061	rs2074872	G	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	10223714	rs2074877	T	C	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	10223793	rs35783712	C	T	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	10227708	rs3826442	C	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	10231498	rs2277645	A	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	10235360	rs8064714	G	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	10236465	rs2240579	G	A	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	10243589	rs4445936	C	A	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	10243717	rs3760423	G	A	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	10247544	rs12453187	C	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	10249888	rs34168540	G	GA	1722.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	10254197	rs2108568	A	G	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	10258153	rs3214260	GT	G	4475.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=4.260;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.208;QD=42.22;ReadPosRankSum=2.010;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:2,104:0.98:106
chr17	10258155	rs5010940	T	C	4484.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.208;QD=42.31;ReadPosRankSum=2.010;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:2,104:0.98:106
chr17	10314375	rs12601552	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	10314395	rs12601678	C	T	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	10317831	rs4791406	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	10317842	rs4791407	A	G	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	10318636	rs8068729	A	G	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	10346781	rs3744554	T	C	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	10348354	rs2277649	T	C	6522.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	10348705	rs3833153	A	AGAAGC	3196.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	10353704	rs181605971	C	T	5965.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	10353985	rs117387314	A	G	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	10355371	rs11651295	C	T	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	10355763	rs917361	T	C	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	10356816	rs3744557	C	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	10360016	rs2041123	C	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	10362746	rs2058099	A	G	7605.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	10363410	rs3744561	A	G	19221.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=761;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;MQRankSum=-0.221;QD=25.46;ReadPosRankSum=2.138;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:2,753:1.00:755
chr17	10363427	.	G	T	7804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.338;QD=10.36;ReadPosRankSum=-1.112;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:356,397:0.53:753
chr17	10363462	.	G	A	8739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DP=777;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.644;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:336,431:0.56:767
chr17	10363589	.	G	C	8663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.74;ReadPosRankSum=0.148;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:144,237:0.62:381
chr17	10363599	.	G	C	7860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0.000;DP=331;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=1.103;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:116,194:0.63:310
chr17	10363645	.	G	C	1975.77	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:49,87:0.64:136
chr17	10364191	rs1029665	T	C	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	10396031	rs71139047	A	AT	83.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	10399897	rs3744563	A	G	17067.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.56;QD=25.32;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,674:1.00:674
chr17	10411335	rs68047947	G	GT	3953.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.001;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.204;QD=19.97;ReadPosRankSum=0.225;SOR=1.340;set=HC	GT:AD:AF:DP	1/1:6,192:0.97:198
chr17	10411370	rs4791995	T	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=24.69;SOR=1.633;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	10411397	rs4791996	G	A	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	10411632	rs35152572	A	G	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	10414284	rs8082000	C	A	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	10415840	rs2007027	A	G	13624.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr17	10418275	rs1017068	T	G	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	10424897	rs5819275	CAT	CATAT,C	286.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=24;set=Intersection	GT:AF:DP	0/1:0.64:14
chr17	10427924	rs1042236	G	A	8315.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	10431275	rs12952334	A	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	10431877	rs11372676	A	AT	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	10432638	rs2277651	T	C	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	10434925	rs3744565	T	C	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr17	10435325	rs11379780	G	GA	375.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	10442977	rs2277653	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	10446182	rs719277	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	10446508	rs11078849	T	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	10448769	rs11078850	A	T	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	10450816	rs12600539	T	C	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	10541741	rs201626	A	G	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	10595388	rs2520178	A	G	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	10596380	rs9897641	G	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	10614051	rs3215180	AT	A	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	10614442	rs406446	A	G	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	10618665	rs10676707	A	AAACT	161.87	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	10632174	rs453318	A	G	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	10632499	rs421541	G	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	10632535	rs378707	C	T	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	10633181	rs3826448	A	G	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.57;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	10633245	rs202312	T	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=24.31;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	10633320	rs57860819	G	GT	759.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=42.21;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	10633321	rs60373482	C	G	768.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	10633358	rs202311	C	T	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	11455359	rs2969191	C	T	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	11459012	rs1030055	G	C	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	11511412	rs4792156	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	11511457	rs11078022	C	T	3324.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	11513661	rs2191072	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,60:0.98:61
chr17	11522764	rs10852799	G	A	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.532;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	11523082	rs9892256	A	G	4803.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	11532613	rs9896886	T	C	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=23.69;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	11532835	rs9895535	A	G	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	11536049	rs11655911	G	A	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	11543520	rs11653848	T	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	11550340	rs11870495	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	11583089	rs8071438	T	C	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	11604598	rs7214186	T	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	11622494	rs12945437	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	11648332	rs3744578	C	T	5817.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr17	11648444	rs3744580	T	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	11660722	rs11078030	G	T	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	11772285	rs59647695	C	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr17	11778240	rs7211854	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	11786951	rs8070256	T	C	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	11787936	rs11868929	A	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	11787975	rs11078042	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	11806266	rs3815269	T	C	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	11827353	rs2286300	T	C	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	11833287	rs2286303	A	G	10330.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr17	11833365	rs1859887	G	A	8625.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	11835331	rs17612861	G	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	11837161	rs12948962	T	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	11840528	rs2240521	A	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	11886542	rs34660389	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	11886864	rs17613212	T	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	11887518	.	GAA	G,GA	1090.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.68;MQRankSum=0.821;QD=13.14;ReadPosRankSum=1.428;SOR=0.886;set=HC	GT:AD:AF:DP	1/2:8,30,45:0.36,0.54:83
chr17	11894195	rs35075542	C	T	181.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	12606826	rs62058697	A	G	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	12664177	rs16946572	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	12798396	rs72813190	C	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	12812343	rs66643297	C	T	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	12820421	rs35221864	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	12820646	rs7210937	G	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	12822892	rs3826375	G	A	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	12822905	rs3826374	A	G	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	12823271	rs56974323	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	12852392	rs2072255	G	A	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	12852459	rs2072254	A	G	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	12855719	rs2072253	G	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	12860183	rs10602009	AACACAC	A	616.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	12862170	rs3213687	C	T	8184.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr17	12862359	rs9904572	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	12897293	rs9915058	A	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	13927886	rs11649821	G	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.75;QD=25.62;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	13928361	rs143718075	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	13972811	rs6502330	G	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	13977813	rs143814384	C	CTTTA	1502.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	13980350	rs2072279	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	14005373	rs1017076	C	T	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	14005386	rs2108683	T	C	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	14005439	rs2159132	G	A	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	14063389	rs7212977	G	T	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	14095309	rs2230354	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	14095566	rs151441	T	C	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=7.198;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-10.626;QD=0.31;ReadPosRankSum=1.809;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:403,58:0.13:461
chr17	14095639	rs373313742	A	G	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.674;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=25.327;MLEAC=1;MLEAF=0.500;MQ=49.11;MQRankSum=-4.521;QD=5.89;ReadPosRankSum=-5.687;SOR=1.529;set=HC	GT:AD:AF:DP	0/1:168,81:0.33:249
chr17	14095682	rs2158978	T	C	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.75;QD=25.83;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	14139414	rs146117581	C	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.126;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=-5.323;QD=2.22;ReadPosRankSum=-1.126;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr17	14139565	rs4791563	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr17	14139774	rs4791564	C	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.97;QD=25.63;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	14139891	rs62052131	A	C	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.03;QD=24.92;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	14140103	rs4792453	A	G	244.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	14248423	rs9906855	T	C	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	14673431	rs72815721	C	A	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	15134175	rs13422	T	G	5734.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr17	15142755	rs3744333	G	A	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	15154966	rs66507245	T	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	15155057	rs3826362	C	T	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr17	15162389	rs231020	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	15207364	rs13961	T	G	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	15217389	rs230897	G	A	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	15217437	rs230898	C	G	9807.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	15343524	rs71150251	C	CCTT	18374.73	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	15406123	rs71974269	CCTCT	C	3267.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;QD=40.85;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:1,79:0.99:80
chr17	15468765	.	CA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-4.699;QD=0.37;ReadPosRankSum=-0.030;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:94,28:0.23:122
chr17	15492409	rs151442	T	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.99;QD=29.69;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	15492426	rs28445278	C	T	1389.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.21;MQRankSum=2.193;QD=24.38;ReadPosRankSum=-0.725;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:2,55:0.96:57
chr17	15602900	rs2601942	T	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr17	15602950	rs12449956	G	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:60,52:0.46:112
chr17	15603021	rs12452845	T	C	3454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=4.961;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-12.931;QD=12.47;ReadPosRankSum=2.901;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:178,99:0.36:277
chr17	15603031	rs12450403	G	T	3366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=6.590;MLEAC=1;MLEAF=0.500;MQ=55.59;MQRankSum=-13.005;QD=11.04;ReadPosRankSum=3.618;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:208,97:0.32:305
chr17	15690210	rs376068178	AC	A	824.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.93;QD=29.45;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	15884227	rs2286796	A	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	15884561	rs10491104	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	15903602	rs758853	C	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr17	15905190	rs3760298	A	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	15909728	rs3760297	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	15928584	rs2301652	T	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	15930087	rs35168566	G	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	15943910	rs1075901	T	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	15950198	rs1079533	G	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	15961951	rs2157991	A	G	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	15961993	rs2157990	T	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	15968143	rs2285583	T	C	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	15973417	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.477;QD=2.16;ReadPosRankSum=1.156;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr17	15973844	rs12942295	A	T	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	15977005	rs11078330	A	T	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	16005187	rs2285580	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	16024701	rs11410605	C	CA	127.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:2,7:0.78:9
chr17	16041578	.	T	TA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=-1.193;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:94,23:0.20:117
chr17	16041636	rs2875265	T	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=25.01;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	16046845	rs2285579	A	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	16049626	rs11078333	A	T	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=20.90;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	16052606	rs71299857	C	CATATAT	973.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.41;ReadPosRankSum=1.432;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr17	16185248	rs3785626	T	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	16221271	rs56228407	A	AC	2005.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	16221319	rs9890539	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	16229232	rs15739	A	G	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	16246016	rs7477	A	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	16248083	rs9907546	T	A	1342.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.66;ReadPosRankSum=0.591;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:4,58:0.94:62
chr17	16251859	rs2286666	A	G	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	16256240	rs3095172	C	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	16323589	rs4273076	C	A	17013.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr17	16323608	rs68189233	ATAGT	A	14968.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr17	16325968	rs8121	A	G	9078.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr17	16326005	rs1129235	A	C	12117.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr17	16326253	rs7225104	G	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	16330280	rs151033397	G	A	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	16331820	rs4792742	T	C	3132.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	16335191	rs34786363	C	A	25556.77	.	AC=2;AF=1.00;AN=2;DB;DP=999;set=Intersection	GT:AD:AF:DP	1/1:0,987:1.00:987
chr17	16336828	rs7213055	G	A	5286.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	16336992	rs14039	C	G	6806.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	16340316	rs7214366	A	C	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	16340405	rs7215836	T	C	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	16342813	rs4072454	T	C	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	16344314	rs55710649	A	ACT	15945.73	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr17	16344523	.	C	CA	2303.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.117;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.45;ReadPosRankSum=-0.760;SOR=0.659;set=HC	GT:AD:AF:DP	1/1:13,119:0.90:132
chr17	16344600	rs4617905	T	C	14472.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.09;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr17	16344600	.	TG	CC	2947	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=2;HapScore=1;MGOF=13;MMLQ=23;MQ=59.78;NF=70;NR=61;PP=2947;QD=20;SC=GGTGAACCTATGGTTTTCTGA;SbPval=0.46;Source=Platypus;TC=138;TCF=76;TCR=62;TR=131;WE=16344609;WS=16344590;set=Platypus	GT:AD:AF:DP	1/1:7,131:0.95:138
chr17	16344601	rs4622550	G	C	14472.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	16344875	rs9251	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	16346932	rs4792745	G	T	6552.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	16347567	rs4438345	T	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	16350156	rs1009237	T	C	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.257;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	16350239	rs2882581	A	G	4586.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=1.111;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:1,178:0.99:179
chr17	16351592	rs2351084	T	C	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	16395371	.	C	A	751.77	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	16527795	rs8065506	C	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	16537372	rs60858649	CA	C	1602.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;MQ=60.47;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	16537397	rs9911677	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	16550817	rs7218241	C	T	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	16552913	rs28626982	C	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	16624049	.	T	C	360.77	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr17	16734809	rs2688010	A	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.83;QD=25.88;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	16734869	rs62074145	A	G	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.81;QD=26.05;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	16855878	rs8072293	C	T	6937.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	16946343	rs61242604	G	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	17035036	rs2271520	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	17039561	rs3833098	CCAGCAG	CCAG,C	4505.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=276;set=Intersection	GT:AF:DP	1/1:0.98:182
chr17	17046024	rs3744137	C	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	17046736	rs6502563	T	G	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	17049547	rs117407639	G	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	17050573	rs3744134	G	A	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	17062241	rs11551189	C	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	17064775	rs5819603	G	GC	3663.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	17069073	.	C	A	12709.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.847;ClippingRankSum=0.000;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=0.749;SOR=0.447;set=HC	GT:AD:AF:DP	1/1:1,498:1.00:499
chr17	17069105	rs3744131	G	A	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr17	17075318	rs2292530	A	G	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	17118442	rs34235236	T	C	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	17120668	rs4985705	G	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	17122286	rs8065572	C	T	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	17122327	rs8065832	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	17127471	rs1736219	G	A	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	17158128	rs71152853	G	GA	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=7.90;ReadPosRankSum=2.157;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr17	17165136	rs1736210	C	A	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	17168164	rs3182911	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	17179209	rs9892352	A	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=25.41;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	17179299	rs4985760	C	G	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	17179481	rs4985761	G	A	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	17184033	rs3853545	G	T	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	17184080	rs1029829	G	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	17184399	rs2012954	A	C	7272.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	17394611	rs1242489	G	A	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr17	17409401	rs3816511	G	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	17409560	rs7946	C	T	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	17409709	rs1918249	T	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	17412032	rs4646407	G	C	7176.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	17425631	rs897453	C	T	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	17480195	rs2124344	A	G	9641.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr17	17767526	rs34383547	A	AT	569.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=1.514;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:8,36:0.82:44
chr17	17770355	rs11657074	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	17772622	.	GA	G	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.220;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:73,28:0.28:101
chr17	17774118	rs9907287	C	T	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	17948475	rs2955355	G	A	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	17997209	rs2230316	G	A	9198.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr17	18003671	rs2272570	T	G	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	18003845	rs854813	C	T	9786.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr17	18042276	rs2075658	A	C	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	18042527	rs854783	A	G	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	18043766	rs854780	C	G	11521.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,433:1.00:433
chr17	18044270	rs854779	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	18044893	rs11658477	G	A	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	18046058	rs854778	A	C	8632.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	18046290	rs8065026	T	C	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	18046898	rs854777	T	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	18047671	rs11421905	G	GC	1422.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	18047772	rs11421904	T	TC	8321.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=35.26;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	18051975	rs854774	T	C	7306.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	18052466	rs4303606	A	G	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	18052867	rs2955379	T	C	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	18054868	rs854773	G	T	8874.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.89;SOR=1.377;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	18054917	rs865923	T	C	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=2.815;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	18055229	rs854772	G	A	12142.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr17	18057215	rs9916193	C	G	23408.77	.	AC=2;AF=1.00;AN=2;DB;DP=897;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,890:1.00:890
chr17	18057272	rs712271	A	G	11412.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr17	18057301	rs735960	G	A	6843.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	18057907	rs62073602	A	G	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	18063441	rs712273	T	C	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	18064730	rs8077577	C	T	18456.77	.	AC=2;AF=1.00;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	1/1:1,722:1.00:723
chr17	18065888	rs62073604	T	C	9834.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr17	18066791	rs62073605	C	T	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	18070761	rs854796	G	A	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	18077175	rs854800	T	C	8699.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr17	18088094	rs11078411	C	T	19622.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,721:1.00:721
chr17	18111793	rs1563371	C	T	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	18111868	rs1378602	G	A	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	18144720	rs2245737	C	T	7669.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	18148485	rs7498	G	A	6066.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	18149854	rs2856289	A	G	15081.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr17	18150444	.	AC	A	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.475;QD=5.04;ReadPosRankSum=0.535;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr17	18151424	rs35738574	C	G	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	18154510	rs2071242	T	C	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	18156541	rs2071241	A	G	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	18161744	rs59366579	C	T	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	18167505	rs2605143	T	C	5428.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.813;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.61;ReadPosRankSum=3.773;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:5,207:0.98:212
chr17	18194011	rs3817992	C	A	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	18194362	rs6502645	C	T	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	18202996	rs2294913	C	T	6787.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	18208334	rs7225932	C	A	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	18211537	rs201230376	CAAAAAAAAAAAAAAAAA	C	876.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	18217903	rs17805992	G	C	10603.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,415:1.00:415
chr17	18219835	rs3829956	T	C	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	18220770	rs1563632	G	A	7593.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	18221010	rs12449313	A	G	11264.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr17	18236339	rs2273029	G	A	7804.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	18243872	rs62072543	GC	AT	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	18252010	rs3866955	T	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	18259415	rs12950117	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	18284262	rs570145	G	A	12552.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.247;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=-0.965;SOR=0.299;set=HC	GT:AD:AF:DP	1/1:1,491:1.00:492
chr17	18286916	rs112094897	A	AG	5289.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	18286922	rs111736884	A	AG	5201.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	18286930	rs200680358	A	AG	4719.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.18;QD=47.67;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	18286938	rs145486982	A	AG	4561.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	18291432	rs140944304	TCACAGC	T	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.99;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	18291456	rs578670	C	G	159.90	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.61;QD=53.30;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	18291470	rs586214	C	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	18291544	rs586322	A	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	18291559	rs9890369	T	C	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	18291618	rs586757	C	T	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr17	18314830	rs62074236	T	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	18314964	rs62074238	T	G	3767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.080;ClippingRankSum=0.000;DB;DP=1162;ExcessHet=3.0103;FS=5.938;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-20.554;QD=3.29;ReadPosRankSum=0.409;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:857,288:0.25:1145
chr17	18315002	rs113152077	A	C	20577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=1555;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=16.339;QD=13.35;ReadPosRankSum=-4.189;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:570,971:0.63:1541
chr17	18315107	rs113907775	C	CCT	46525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=2187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.54;MQRankSum=-7.999;QD=21.89;ReadPosRankSum=-0.479;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:898,1227:0.58:2125
chr17	18380008	rs10674629	T	TACC	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	18380065	rs1682221	C	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	18380154	rs1682220	A	G	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	18380163	rs376412531	GGA	G	2513.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	18380260	rs77759205	C	A	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	18391023	.	CA	C	607.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.99;QD=37.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	18394431	rs140402450	T	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.31;QD=25.75;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	18394552	rs201945348	G	A	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	18394706	rs368033760	A	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.61;QD=26.42;SOR=1.421;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	18395647	.	G	T	2511.77	.	AC=2;AF=1.00;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	18397711	rs75054442	G	A	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.91;QD=24.60;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	18498059	rs66528329	C	CA	555.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.92;QD=34.73;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	18544542	rs200833160	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.20;QD=26.19;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	18565143	rs55636053	T	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	18565350	rs9912644	G	C	6808.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.72;QD=25.60;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	18565423	rs9912852	G	A	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr17	18574794	rs201620470	C	T	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.50;QD=30.08;SOR=3.171;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	18574872	rs146810330	G	T	7487.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.44;QD=26.09;SOR=1.093;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	18574998	rs9635701	A	T	10047.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr17	18575127	rs9635680	G	A	7904.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.67;QD=42.27;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	18575140	rs9635681	A	G	7680.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.91;QD=43.15;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	18575675	rs55797270	T	G	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	18576256	rs4924901	G	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.27;QD=27.98;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	18602476	rs1969051	A	G	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=26.33;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	18610134	rs1973459	T	G	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	18630995	rs8075739	G	A	6837.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	18638151	rs9916065	A	G	7430.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	18643642	rs150131079	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	18647539	rs116483657	G	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.97;QD=30.71;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	18647625	rs74502778	T	A	7910.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.42;QD=25.85;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr17	18653070	rs9895749	G	A	6623.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	18670278	rs4611519	A	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.84;QD=26.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	18671733	rs10775382	C	A	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	18678548	rs4630608	C	T	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	18684487	rs59588820	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	18684642	rs75174617	G	T	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.76;QD=24.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	18694277	rs61075345	G	A	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.76;QD=25.42;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	18700843	rs115776459	C	A	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.94;QD=24.79;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	18702094	rs2270139	A	G	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.96;QD=27.83;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	18702220	rs8080471	T	C	10333.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	18708830	rs55974180	G	GT,GTT	5091.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.772;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.82;MQRankSum=1.479;QD=17.20;ReadPosRankSum=0.279;SOR=0.639;set=HC	GT:AD:AF:DP	1/2:25,207,64:0.70,0.22:296
chr17	18769349	rs2386404	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	18770733	rs2305064	G	A	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	18775900	rs4393623	A	G	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	18776020	rs7503678	A	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	18793061	rs3803835	C	T	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	18793225	rs3826380	A	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	18814661	rs55971101	T	TTA	2288.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	18833810	rs1634411	C	T	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	18863105	rs2074276	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	18872337	rs8415	T	C	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	18874685	rs3071666	C	CGGT	5721.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	18874720	rs916823	C	G	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	18880268	rs2472715	C	A	7928.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	18882991	rs2472714	T	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.92;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	18916893	rs11652575	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	18918258	rs28526726	C	G	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	18918510	.	A	ACGGTACGGGGGTGGGGGC	1606.73	.	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=34.93;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	18923818	rs1624825	G	A	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	19213335	rs2296981	C	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	19216917	rs3826405	T	C	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	19231898	rs7206963	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	19232078	rs6587220	T	C	9126.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	19233096	rs2296979	T	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	19240972	rs11652712	G	A	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	19247075	rs4924987	G	A	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	19265797	rs10445411	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.70;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	19284982	.	TGAGGAGCCG	T	10583.73	.	AC=2;AF=1.00;AN=2;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	19284994	.	TCAGAGGTG	T	10703.73	.	AC=2;AF=1.00;AN=2;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=45.74;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	19285005	.	TTGTGGGCAGGTCGGGTGGG	T	10627.73	.	AC=2;AF=1.00;AN=2;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=46.21;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	19314611	rs739830	T	C	11805.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,454:1.00:454
chr17	19314917	rs33912708	CT	C	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-0.523;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:21,51:0.71:72
chr17	19318031	rs1295330	A	G	13410.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:2,520:1.00:522
chr17	19319015	rs1295329	C	T	8216.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	19437184	.	T	TACCC	765.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	19437187	.	T	TGCCGGCCTGCGCGGTACC	926.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.29;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	19445923	rs12451696	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	19458777	rs2440149	G	C	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	19595540	rs11313767	CA	C	307.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=15.39;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	19648219	rs56234923	T	C	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=-2.281;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr17	19699358	rs192511	T	C	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	19699605	rs10587010	CAT	C	403.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr17	19702892	rs11456096	C	CA	155.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=-0.540;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr17	19713740	rs150122	C	T	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	19729306	.	A	AAAATAAATAAAT	1267	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9999;HP=17;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=1267;QD=635.0;SC=TCTCAAAAAAAAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=19729322;WS=19729305;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	19729309	.	A	AT	232.80	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	19729312	rs60573446	A	AT	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	19729314	.	A	AATAAATAAAT	232.80	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	19729495	rs157397	T	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	19741877	rs34670978	G	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	19742056	rs75883553	A	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	19812541	rs203462	T	C	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	19850975	rs203475	A	G	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	19861458	rs2108978	C	T	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	19999781	rs12942179	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	20000131	rs4925085	G	T	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	20059591	rs3833861	A	AC	3993.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:7,140:0.95:147
chr17	20254234	.	G	GT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-0.430;QD=1.22;ReadPosRankSum=0.917;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr17	20297545	rs3874846	T	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.77;QD=25.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	20305306	.	CAATAAT	C	232.80	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	20354747	rs200108749	C	CCT	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.39;QD=42.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	20354836	rs150485558	A	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.68;QD=23.99;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	20436054	.	G	GAGA	2498.73	.	AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.00;QD=46.27;SOR=2.480;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	20459595	rs57570943	A	C,G	1328.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=56.07;QD=27.12;SOR=1.473;set=HC	GT:AD:AF:DP	1/2:0,20,29:0.41,0.59:49
chr17	20459624	rs143635700	TTGGCTG	T	308.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr17	20459649	rs111556302	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-2.638;QD=7.68;ReadPosRankSum=-1.687;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr17	20492807	rs199914815	C	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:80,26:0.25:106
chr17	20768850	rs114103783	G	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-4.801;QD=0.33;ReadPosRankSum=0.024;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:109,10:0.08:119
chr17	20768867	rs9906896	A	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:68,23:0.25:91
chr17	20768928	rs141057464	AAT	A	37.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:17,3:0.15:20
chr17	20768931	rs76382049	A	G	46.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:17,3:0.15:20
chr17	20906251	rs4985956	C	T	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	20906257	rs4985957	A	G	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.78;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	20908081	rs66644145	CTAGTGGAGCTGCGGGCAGCCAA	C	2040.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	20908325	rs9797279	T	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	20911173	rs2291034	G	T	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr17	20916022	rs17770614	A	C	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	20916035	rs4985962	A	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	20916362	rs719093	G	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	20919334	rs7213684	T	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	20919337	rs7207753	G	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	20921492	rs1038107	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	20924523	rs2291037	G	A	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	20924620	rs899342	T	C	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	20945874	rs10579510	GCA	G	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	20945887	rs4985967	G	A	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	21102178	rs140532270	GGA	G	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=1.828;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr17	21156530	rs201190568	G	GC	1098.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	21194658	rs71160134	T	TACAACACAACACAAC	3487.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.42;QD=48.44;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	21194769	rs72840055	C	T	2170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=7.410;MLEAC=1;MLEAF=0.500;MQ=61.15;MQRankSum=-3.340;QD=9.82;ReadPosRankSum=1.418;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:156,65:0.29:221
chr17	21194769	.	CGA	TGT	1207	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=1;HapScore=1;MGOF=58;MMLQ=23;MQ=61.28;NF=14;NR=17;PP=1207;QD=40.6602540278;SC=ACTGGCCTGTCGACAGTGCAG;SbPval=0.6;Source=Platypus;TC=115;TCF=53;TCR=62;TR=31;WE=21194793;WS=21194759;set=Platypus	GT:AD:AF:DP	0/1:84,31:0.27:115
chr17	21194771	rs114473529	A	T	2170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=6.405;MLEAC=1;MLEAF=0.500;MQ=61.16;MQRankSum=-3.253;QD=9.91;ReadPosRankSum=2.293;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:157,62:0.28:219
chr17	21194785	rs72840057	T	C	2351.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:136,67:0.33:203
chr17	21194820	rs66503560	G	A	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:131,59:0.31:190
chr17	21194843	rs75693966	T	C	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.306;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:110,48:0.30:158
chr17	21194852	rs72840058	G	A	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.218;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:102,38:0.27:140
chr17	21194859	rs62056394	G	A	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-0.627;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:94,33:0.26:127
chr17	21198972	rs2363221	T	C	4869.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.849;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.204;QD=37.17;ReadPosRankSum=1.694;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:1,130:0.99:131
chr17	21198972	.	TGGTGTC	CGGTGTC,CGGTGTT	989	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=43;MMLQ=23;MQ=60.27;NF=51,36;NR=29,18;PP=326,989;QD=4.50964015684;SC=GATGCAGGCTTGGTGTCCCCA;SbPval=0.52;Source=Platypus;TC=80;TCF=51;TCR=29;TR=80,54;WE=21198986;WS=21198962;set=Platypus	GT:AF:DP	0/1:1.00:80
chr17	21198978	rs2363220	C	T	1960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.489;QD=12.65;ReadPosRankSum=3.738;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:65,90:0.58:155
chr17	21199022	rs35804189	A	T	5878.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:117,151:0.56:268
chr17	21199037	rs2885719	G	A	6601.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:123,167:0.58:290
chr17	21199051	rs56020453	T	C	4153.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:182,142:0.44:324
chr17	21199083	rs4442881	T	A	3694.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:159,181:0.53:340
chr17	21199105	rs3035435	AG	A	5010.73	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:128,157:0.55:285
chr17	21199111	rs55963016	G	A	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:163,137:0.46:300
chr17	21199236	rs2363219	C	T	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr17	21199275	rs2363218	G	T	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.82;ReadPosRankSum=1.331;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr17	21199275	.	GTG	TTA	505	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=27;MQ=60.0;NF=3;NR=10;PP=505;QD=42.9590672971;SC=CAGGGTCTCTGTGCAGAGCTT;SbPval=0.9;Source=Platypus;TC=32;TCF=12;TCR=20;TR=13;WE=21199285;WS=21199265;set=Platypus	GT:AD:AF:DP	0/1:19,13:0.41:32
chr17	21199277	rs2363217	G	A	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=1.473;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr17	21199376	rs5819736	G	GT	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.291;QD=5.60;ReadPosRankSum=1.076;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:53,35:0.40:88
chr17	21199390	rs4997717	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.383;QD=4.86;ReadPosRankSum=0.953;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:63,34:0.35:97
chr17	21199403	rs4997718	C	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.712;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.284;QD=6.44;ReadPosRankSum=-0.075;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:59,37:0.39:96
chr17	21199499	rs2885718	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr17	21199515	rs5025581	C	T	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr17	21201579	rs11651154	C	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr17	21201719	rs8076154	T	C	4288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.755;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:226,221:0.49:447
chr17	21201851	rs8072386	A	G	3080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=-0.884;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:249,167:0.40:416
chr17	21201884	rs2305875	T	C	2338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-1.257;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:126,74:0.37:200
chr17	21201890	rs8072401	A	G	2220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-1.556;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:101,57:0.36:158
chr17	21201894	rs8071865	C	T	2030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-1.781;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:94,53:0.36:147
chr17	21201907	rs2305874	G	A	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.338;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=-1.274;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:63,31:0.33:94
chr17	21202056	rs34676150	G	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=14.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=1.109;SOR=2.692;set=HC	GT:AD:AF:DP	0/1:80,23:0.22:103
chr17	21202063	rs77850849	G	C	1020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.886;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=0.207;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:94,30:0.24:124
chr17	21202067	rs76764437	A	G	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-1.976;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:99,40:0.29:139
chr17	21202078	rs35477472	G	A	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-2.589;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:117,53:0.31:170
chr17	21202102	rs35701021	C	T	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:178,95:0.35:273
chr17	21202191	rs33911218	C	A	7819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=1047;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=-1.487;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:613,430:0.41:1043
chr17	21202237	rs36047035	G	C	9133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=2.253;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:624,492:0.44:1116
chr17	21202272	rs34880480	C	G	7561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=850;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=1.682;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:446,402:0.47:848
chr17	21202310	rs77343934	GC	AT	7280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=1.778;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.89;ReadPosRankSum=0.779;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:215,192:0.47:407
chr17	21202316	rs78463537	T	C	6870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.929;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.52;ReadPosRankSum=1.497;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:189,163:0.46:352
chr17	21202318	rs77591777	G	T	6267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.82;ReadPosRankSum=1.643;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:179,154:0.46:333
chr17	21202370	rs34794731	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr17	21202382	rs35763451	TG	T	860.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr17	21203689	rs71207220	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr17	21203711	rs73311537	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr17	21203820	rs78304829	G	C	2469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=-1.990;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:89,64:0.42:153
chr17	21203825	rs75854955	C	G	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=-1.621;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:102,75:0.42:177
chr17	21203893	rs34105301	T	C	2458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.039;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:182,131:0.42:313
chr17	21203934	rs62057672	G	A	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:141,105:0.43:246
chr17	21203949	rs62057673	C	T	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:114,84:0.42:198
chr17	21203998	rs62057674	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr17	21204153	rs66883103	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:102,59:0.37:161
chr17	21204187	rs56067280	G	T	4482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=2.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=0.375;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:256,125:0.33:381
chr17	21204192	rs56216806	C	T	4549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.124;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:277,137:0.33:414
chr17	21204210	rs55796947	C	T	3080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-0.699;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:355,183:0.34:538
chr17	21204257	rs56166328	G	A	5860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;ClippingRankSum=0.000;DB;DP=802;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-0.221;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:476,322:0.40:798
chr17	21204266	rs2230435	T	C	27417.77	.	AC=2;AF=1.00;AN=2;DB;DP=804;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.32;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,799:1.00:799
chr17	21204308	rs55777930	G	T	12725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=761;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=1.407;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:415,341:0.45:756
chr17	21204314	.	TTG	T	12687.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DP=723;ExcessHet=3.0103;FS=2.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.67;ReadPosRankSum=-0.495;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:381,337:0.47:718
chr17	21204318	.	A	ACG	12388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DP=704;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.72;ReadPosRankSum=2.148;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:382,317:0.45:699
chr17	21204428	rs36191822	G	T	4365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.98;ReadPosRankSum=-1.003;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:111,119:0.52:230
chr17	21204437	rs76549047	T	C	4165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.985;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=-0.291;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:102,104:0.50:206
chr17	21204441	rs78162711	T	C	3915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.976;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.72;ReadPosRankSum=-0.357;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:93,96:0.51:189
chr17	21205352	rs66761201	CGGA	C	997.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=4.485;QD=4.54;ReadPosRankSum=1.497;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:183,37:0.17:220
chr17	21205360	rs74998514	G	A	1033.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.066;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=4.449;QD=4.64;ReadPosRankSum=0.895;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:185,38:0.17:223
chr17	21205361	rs67557217	GGCT	G	992.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.561;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=4.545;QD=4.41;ReadPosRankSum=1.334;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:188,37:0.16:225
chr17	21205396	rs75974715	C	A	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-1.792;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:148,51:0.26:199
chr17	21205406	rs72831582	A	G	1656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-2.188;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:137,53:0.28:190
chr17	21205460	rs62057721	C	T	1558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.667;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.265;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.355;QD=6.44;ReadPosRankSum=-0.340;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:156,86:0.36:242
chr17	21205592	rs66644302	GGC	G	5558.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:78,140:0.64:218
chr17	21205604	rs62057722	T	C	5600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.969;QD=27.73;ReadPosRankSum=-1.156;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:65,137:0.68:202
chr17	21205606	rs2305871	G	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:136,64:0.32:200
chr17	21205642	rs62057723	T	G	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,76:0.64:119
chr17	21205654	rs72831585	A	G	2219.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.94;ReadPosRankSum=1.042;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:35,54:0.61:89
chr17	21205654	.	AT	GA	2665	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=3;HapScore=1;MGOF=38;MMLQ=27;MQ=60.0;NF=14;NR=30;PP=2665;QD=20;SC=GAGCCTGCCTATTGATGGTGT;SbPval=0.55;Source=Platypus;TC=75;TCF=24;TCR=51;TR=44;WE=21205663;WS=21205632;set=Platypus	GT:AD:AF:DP	1/0:31,44:0.59:75
chr17	21205655	rs76165275	T	A	2171.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.40;ReadPosRankSum=1.013;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:35,54:0.61:89
chr17	21206269	rs73982750	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr17	21206294	rs73311581	C	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr17	21206360	rs67280439	A	G	3092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-0.324;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:114,79:0.41:193
chr17	21206372	rs72838545	G	C	3614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-1.483;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:133,97:0.42:230
chr17	21206385	rs72838547	C	T	3938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=0.251;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:179,119:0.40:298
chr17	21206444	rs62057728	A	G	4740.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:320,254:0.44:574
chr17	21206556	rs736103	C	T	10703.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:2,409:1.00:411
chr17	21206616	rs57761454	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr17	21206632	rs35678520	C	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.558;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-2.203;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr17	21206635	rs77285979	T	A	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.277;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-2.690;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr17	21206642	rs59259996	G	A	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.008;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-2.178;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr17	21206654	rs56821097	G	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr17	21207602	rs55677712	C	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr17	21207649	rs56342308	C	T	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr17	21207844	rs2230436	C	T	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:263,132:0.33:395
chr17	21207909	rs41301807	G	A	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.655;QD=4.95;ReadPosRankSum=-0.217;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:133,59:0.31:192
chr17	21207916	rs7209761	A	G	6310.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	21207938	rs75147012	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=6.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=-0.074;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:66,32:0.33:98
chr17	21207945	rs9896440	A	G	1735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.66;ReadPosRankSum=-0.926;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:32,52:0.62:84
chr17	21208292	rs7214432	T	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:133,66:0.33:199
chr17	21208317	rs4456559	G	A	5648.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:127,210:0.62:337
chr17	21208331	rs1898407	G	A	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.469;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:316,109:0.26:425
chr17	21208347	rs4559960	C	A	2491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-0.330;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:370,134:0.27:504
chr17	21208349	rs7209860	C	G	2741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=0.754;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:347,167:0.32:514
chr17	21208413	rs1657695	C	T	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:389,164:0.30:553
chr17	21208449	rs1657694	G	T	4451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.201;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:285,135:0.32:420
chr17	21208456	rs1657693	A	G	4439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.456;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:263,125:0.32:388
chr17	21208640	rs7209152	G	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr17	21215424	rs35026048	G	A	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=1.470;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:56,55:0.50:111
chr17	21215434	rs113634008	A	AC	1598.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=1.506;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:70,63:0.47:133
chr17	21215446	rs62055363	C	T	1844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.979;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:96,84:0.47:180
chr17	21215483	rs55935757	C	T	3240.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:201,169:0.46:370
chr17	21215537	rs55736474	C	A	5404.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:417,290:0.41:707
chr17	21215552	rs56369732	C	T	12009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=1.534;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:477,324:0.40:801
chr17	21215557	rs35206134	G	A	12210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=815;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=0.942;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:479,331:0.41:810
chr17	21215637	rs66486636	G	A	6673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=0.200;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:333,189:0.36:522
chr17	21215643	rs73302034	A	G	6502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=0.109;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:318,175:0.35:493
chr17	21215682	rs73302038	G	A	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:181,81:0.31:262
chr17	21215700	rs73302043	T	G	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:139,59:0.30:198
chr17	21216661	rs4994551	C	T	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.338;QD=12.82;ReadPosRankSum=-1.073;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr17	21216664	rs4081986	A	G	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.415;QD=12.21;ReadPosRankSum=-0.505;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr17	21216686	rs4994549	C	A	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.268;QD=12.52;ReadPosRankSum=-1.004;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:51,33:0.39:84
chr17	21216710	rs4994548	T	C	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.297;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.451;QD=8.27;ReadPosRankSum=0.582;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:97,47:0.33:144
chr17	21216758	rs5819747	G	GCTTC	4106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.548;QD=10.95;ReadPosRankSum=0.367;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:264,111:0.30:375
chr17	21216788	rs1673840	C	T	4681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=1.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-3.723;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:378,258:0.41:636
chr17	21216846	rs1657688	G	C	5173.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:353,279:0.44:632
chr17	21216891	rs934688	G	A	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:233,190:0.45:423
chr17	21216951	rs1673839	C	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:94,51:0.35:145
chr17	21216964	rs1657686	T	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	21217290	rs1673837	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr17	21217397	rs1657685	A	G	10184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.71;ReadPosRankSum=0.136;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:304,271:0.47:575
chr17	21217400	rs1622401	G	A	10264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.58;ReadPosRankSum=-0.283;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:310,274:0.47:584
chr17	21217411	rs1657684	T	C	5325.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:336,286:0.46:622
chr17	21217513	rs2363198	G	A	5084.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:286,257:0.47:543
chr17	21217547	rs2363197	T	C	4447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.164;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.135;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:155,129:0.45:284
chr17	21217554	rs2363196	C	T	4115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.08;ReadPosRankSum=0.032;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:134,107:0.44:241
chr17	21217566	rs2363375	C	T	2953.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:109,91:0.46:200
chr17	21217586	rs2363374	G	T	2652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.34;ReadPosRankSum=-2.030;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:87,66:0.43:153
chr17	21217596	rs2363373	C	G	2079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=-1.735;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:73,50:0.41:123
chr17	21318521	rs76804083	C	T	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr17	21318546	rs112960185	A	G	1494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=-1.615;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:74,42:0.36:116
chr17	21318552	rs112854769	G	A	1503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.295;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:87,43:0.33:130
chr17	21318555	rs58462457	C	T	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=2.131;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:89,48:0.35:137
chr17	21318569	rs74584621	C	T	2054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=1.523;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:140,55:0.28:195
chr17	21318586	rs59891808	G	C	7748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.58;ReadPosRankSum=-0.173;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:91,190:0.68:281
chr17	21318588	rs77791524	C	G	3457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-0.287;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:197,93:0.32:290
chr17	21318595	rs58780973	G	C	3547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=1.352;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:213,105:0.33:318
chr17	21318603	rs79809401	C	T	4184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-2.462;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:241,140:0.37:381
chr17	21318629	rs58862472	C	A,T	5678.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=0.571;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-1.385;SOR=0.759;set=HC	GT:AD:AF:DP	1/2:213,253,229:0.36,0.33:695
chr17	21318663	rs72846666	G	A	7060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=1153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.17;ReadPosRankSum=1.602;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:738,406:0.35:1144
chr17	21318698	rs1657738	C	T	8099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=1427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=0.417;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:929,482:0.34:1411
chr17	21318782	rs78117732	G	A	6199.77	.	AC=1;AF=0.500;AN=2;DB;DP=1370;set=Intersection	GT:AD:AF:DP	0/1:935,395:0.30:1330
chr17	21318821	rs1714865	A	C	6668.77	.	AC=1;AF=0.500;AN=2;DB;DP=1183;set=Intersection	GT:AD:AF:DP	0/1:758,391:0.34:1149
chr17	21318867	rs73979893	G	A	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=1095;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.186;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:860,181:0.17:1041
chr17	21318897	rs1657739	G	C	5529.77	.	AC=1;AF=0.500;AN=2;DB;DP=1081;set=Intersection	GT:AD:AF:DP	0/1:719,326:0.31:1045
chr17	21318912	rs35011501	C	A	6157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.902;ClippingRankSum=0.000;DB;DP=1068;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=0.934;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:756,290:0.28:1046
chr17	21318918	rs79626424	G	A	5958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200;ClippingRankSum=0.000;DB;DP=1033;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.770;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:737,278:0.27:1015
chr17	21318948	rs112314728	C	T	6600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.000;DB;DP=972;ExcessHet=3.0103;FS=2.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=0.388;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:737,224:0.23:961
chr17	21318951	rs75757803	C	T	6685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.067;ClippingRankSum=0.000;DB;DP=973;ExcessHet=3.0103;FS=2.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=0.101;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:742,223:0.23:965
chr17	21318952	rs8076599	A	G	15966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.310;ClippingRankSum=0.000;DB;DP=973;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-1.019;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:399,564:0.59:963
chr17	21318969	rs79666990	C	T	6856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=936;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-2.407;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:717,212:0.23:929
chr17	21318981	rs9909970	C	T	5151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.702;ClippingRankSum=0.000;DB;DP=863;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.896;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:679,174:0.20:853
chr17	21319007	rs1657740	G	A	5890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939;ClippingRankSum=0.000;DB;DP=750;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=2.173;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:397,308:0.44:705
chr17	21319007	.	GG	AC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=1;MGOF=43;MMLQ=23;MQ=60.0;NF=68;NR=88;PP=2944;QD=20;SC=GCTGAGGGCCGGGGCCGCACA;SbPval=0.42;Source=Platypus;TC=423;TCF=174;TCR=249;TR=156;WE=21319016;WS=21318997;set=Platypus	GT:AD:AF:DP	1/0:267,156:0.37:423
chr17	21319008	rs1657741	G	C	13991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=4.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.87;ReadPosRankSum=1.307;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:304,400:0.57:704
chr17	21319069	rs76265595	G	A	7907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DB;DP=921;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=3.697;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:662,235:0.26:897
chr17	21319079	rs76518282	C	A	8387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=916;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=3.638;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:649,245:0.27:894
chr17	21319087	rs75029097	G	A	8321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DB;DP=906;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=4.148;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:641,247:0.28:888
chr17	21319110	rs77283567	G	A	7819.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:601,245:0.29:846
chr17	21319121	rs1714864	C	T	5165.77	.	AC=1;AF=0.500;AN=2;DB;DP=888;set=Intersection	GT:AD:AF:DP	0/1:560,297:0.35:857
chr17	21319171	rs73313922	G	A	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	0/1:614,180:0.23:794
chr17	21319208	rs73979896	C	T	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:551,203:0.27:754
chr17	21319230	rs1657742	G	C	3718.77	.	AC=1;AF=0.500;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	0/1:606,234:0.28:840
chr17	21319251	rs73313923	C	T	7506.77	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:606,247:0.29:853
chr17	21319272	rs73313926	C	T	8360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=886;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.291;QD=9.54;ReadPosRankSum=1.041;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:632,244:0.28:876
chr17	21319285	rs72846667	C	T	8066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=921;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.332;QD=8.90;ReadPosRankSum=1.969;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:660,246:0.27:906
chr17	21319302	rs1657743	T	C	16650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=963;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.460;QD=17.71;ReadPosRankSum=0.353;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:396,544:0.58:940
chr17	21319311	rs72846668	C	T	3864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;ClippingRankSum=0.000;DB;DP=982;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.190;QD=4.04;ReadPosRankSum=1.091;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:690,266:0.28:956
chr17	21319369	rs77048459	G	A	9455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DB;DP=1192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.07;ReadPosRankSum=0.141;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:863,308:0.26:1171
chr17	21319392	rs73979899	G	A	9536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=1271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.967;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:962,295:0.23:1257
chr17	21319407	rs16962951	C	T	8752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=1272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-3.205;QD=6.95;ReadPosRankSum=0.584;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:975,285:0.23:1260
chr17	21319436	rs77270326	G	A	7022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=1165;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-5.696;QD=6.07;ReadPosRankSum=0.485;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:918,239:0.21:1157
chr17	21319439	rs76684759	T	G	7029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=1146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-5.826;QD=6.18;ReadPosRankSum=0.885;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:910,228:0.20:1138
chr17	21319452	rs73313929	G	A	5723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=1030;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-7.026;QD=5.58;ReadPosRankSum=0.919;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:832,193:0.19:1025
chr17	21319465	.	T	C	4521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;ClippingRankSum=0.000;DP=896;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-8.087;QD=5.07;ReadPosRankSum=1.812;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:737,155:0.17:892
chr17	21319470	.	T	C	4189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DP=859;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-7.730;QD=4.89;ReadPosRankSum=1.716;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:710,146:0.17:856
chr17	21319473	rs1657744	G	A	5201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=830;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=3.557;QD=6.29;ReadPosRankSum=-0.527;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:535,292:0.35:827
chr17	21319488	rs77176173	C	T	2911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-8.053;QD=4.00;ReadPosRankSum=2.029;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:614,114:0.16:728
chr17	21319519	rs78113532	G	C	1985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.657;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=4.846;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-8.330;QD=3.94;ReadPosRankSum=-1.877;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:424,80:0.16:504
chr17	21319523	rs77987694	C	T	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.778;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=4.848;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-8.276;QD=4.29;ReadPosRankSum=-2.279;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:408,78:0.16:486
chr17	21319527	rs80022364	C	T	2090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.784;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=3.521;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-8.137;QD=4.53;ReadPosRankSum=-2.852;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:386,76:0.16:462
chr17	21319543	rs80335301	G	A	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.575;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-7.320;QD=4.91;ReadPosRankSum=-3.173;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:343,70:0.17:413
chr17	21319560	rs74801394	G	T	1548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-6.778;QD=4.09;ReadPosRankSum=-1.692;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:312,67:0.18:379
chr17	21319650	.	CGAG	C	4357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DP=468;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-8.553;QD=9.58;ReadPosRankSum=0.416;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:326,129:0.28:455
chr17	21319682	rs80203231	C	T	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:356,138:0.28:494
chr17	21319716	rs78135255	G	A	3806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-13.387;QD=8.10;ReadPosRankSum=0.332;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:344,126:0.27:470
chr17	21319728	rs76681424	T	C	3501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-14.328;QD=8.07;ReadPosRankSum=0.509;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:328,106:0.24:434
chr17	21319743	rs76267885	A	G	3111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-14.525;QD=7.84;ReadPosRankSum=0.384;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:304,93:0.23:397
chr17	21319767	rs1612176	C	T	3836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.638;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=0.000;QD=14.70;ReadPosRankSum=2.078;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:149,112:0.43:261
chr17	21319785	rs1657745	C	T	3325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=2.219;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=4.100;QD=12.55;ReadPosRankSum=0.938;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:172,93:0.35:265
chr17	21319786	rs78547883	G	A	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-10.186;QD=7.10;ReadPosRankSum=-1.222;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:202,60:0.23:262
chr17	21319845	rs72846670	C	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:97,34:0.26:131
chr17	21319860	rs2917720	C	A	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.000;QD=8.83;ReadPosRankSum=1.839;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:84,31:0.27:115
chr17	21319860	.	CGGCCTCAG	AGGCCTCAT,TGGCCTCAG	477	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=44;MMLQ=23;MQ=59.68;NF=8,6;NR=11,12;PP=477,169;QD=27.9193618349;SC=GAAGCCGGGACGGCCTCAGCC;SbPval=0.41;Source=Platypus;TC=60;TCF=22;TCR=38;TR=19,18;WE=21319876;WS=21319850;set=Platypus	GT:AF:DP	0/1:0.32:60
chr17	21319868	rs73979902	G	T	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=1.126;QD=9.58;ReadPosRankSum=1.858;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:74,30:0.29:104
chr17	21319908	rs66981137	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;MQ=59.81;set=Intersection	GT:AD:AF:DP	0/1:60,23:0.28:83
chr17	21319943	rs5021699	A	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=5.95;ReadPosRankSum=2.053;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr17	21319955	rs76506689	G	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr17	21319989	rs5021700	C	T	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.94;ReadPosRankSum=1.112;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr17	21319993	rs5021701	T	C	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.38;ReadPosRankSum=0.348;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr17	21536065	rs9325914	A	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.559;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=6.231;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-10.388;QD=1.65;ReadPosRankSum=-2.468;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:140,32:0.19:172
chr17	21536106	rs9325915	T	C	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=9.102;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-12.286;QD=3.91;ReadPosRankSum=0.122;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:150,57:0.28:207
chr17	21536168	rs9325916	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,30:0.30:100
chr17	21544462	rs9285742	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-0.842;QD=22.29;ReadPosRankSum=-0.524;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr17	21544470	rs9285743	A	G	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=-0.842;QD=22.29;ReadPosRankSum=-0.842;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr17	21544587	rs9285744	A	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr17	21544646	rs9285745	T	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr17	21544674	rs9747056	T	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr17	21730740	rs36048882	C	T	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	22066776	rs75644031	T	C	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-11.746;QD=1.25;ReadPosRankSum=0.201;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:209,23:0.10:232
chr17	22066780	rs78507742	C	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-11.879;QD=1.21;ReadPosRankSum=0.493;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:214,23:0.10:237
chr17	22066807	rs78727354	G	T	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-14.315;QD=2.80;ReadPosRankSum=-1.139;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:268,43:0.14:311
chr17	22066822	rs137955476	C	T	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-14.248;QD=3.33;ReadPosRankSum=-0.702;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:248,45:0.15:293
chr17	22066835	rs147079852	C	T	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-13.849;QD=3.87;ReadPosRankSum=-0.339;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:225,45:0.17:270
chr17	22066856	rs138169151	CAG	C	747.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-12.445;QD=3.54;ReadPosRankSum=3.814;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:179,32:0.15:211
chr17	22066870	rs79914182	G	T	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-12.204;QD=3.65;ReadPosRankSum=3.201;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:168,32:0.16:200
chr17	22066948	.	AT	A	50	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=5;HapScore=1;MGOF=26;MMLQ=28;MQ=56.71;NF=0;NR=3;PP=50;QD=25.0;SC=TCCAGAAAAAATATGTGAGAG;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=3;WE=22066956;WS=22066938;set=Platypus	GT:AD:AF:DP	1/0:16,3:0.16:19
chr17	25783681	rs1829803	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	25887530	rs2945397	G	C	8805.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr17	25887541	rs2948526	C	T	8348.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	25887571	rs61054489	T	C	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	25909850	rs2293181	G	T	25941.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.866;ClippingRankSum=0.000;DB;DP=1006;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.23;ReadPosRankSum=0.063;SOR=0.282;set=HC	GT:AD:AF:DP	1/1:1,988:1.00:989
chr17	25912828	rs2945373	A	G	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	25917810	rs1403321	A	G	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr17	25931718	rs55646895	G	C	8492.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	25944235	rs4267373	A	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	26088337	rs59685746	GC	G	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	26575380	rs2292633	G	A	9222.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	26633347	rs35679432	T	TG	188.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.083;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr17	26646434	rs5819836	G	GC	9934.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	26669245	rs5819838	A	AG	4069.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	26684283	rs11314852	GT	G	13434.73	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=37.11;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr17	26684368	rs11555978	G	A	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.82;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr17	26684390	rs11448856	G	GC	8371.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=44.53;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	26684394	rs17856014	T	G	8357.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=44.46;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	26684449	rs4795429	G	C	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	26684514	.	G	C	536.77	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	26684529	rs113967755	G	GGC	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	26687484	rs11379368	G	GC	1706.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	26687898	rs11382918	G	GC	1664.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	26691321	rs9910163	A	G	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	26692224	rs11387886	A	AG	28594.73	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:0,795:1.00:795
chr17	26695704	rs2227725	A	G	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	26699121	rs7212814	G	C	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	26699195	rs11437592	C	CG	3527.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	26699199	rs112387743	G	GC	3541.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	26699205	rs11340312	GA	G	3285.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	26699367	rs11437594	G	GC	3188.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=37.08;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	26708298	.	A	AGC	17897.73	.	AC=2;AF=1.00;AN=2;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=46.25;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	26708302	.	GGT	G	18122.73	.	AC=2;AF=1.00;AN=2;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=44.64;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	26708550	rs11658194	T	C	16423.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr17	26708551	rs11652384	C	G	16423.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr17	26727721	rs5819844	GA	G	1350.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	26729428	rs4795436	C	T	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	26816365	rs11443311	G	GC	13904.73	.	AC=2;AF=1.00;AN=2;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=32.49;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr17	26818676	rs9890678	T	C	20057.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:0,751:1.00:751
chr17	26824156	rs11567842	A	G	15768.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr17	26850810	rs59828630	T	TTCTC,TTCTCTC	1269.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.96;SOR=1.839;set=HC	GT:AD:AF:DP	1/2:0,12,19:0.39,0.61:31
chr17	26850929	rs483434	A	C	9377.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr17	26851501	rs614434	G	A	17212.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,663:1.00:663
chr17	26851602	rs2071587	C	T	29411.77	.	AC=2;AF=1.00;AN=2;DB;DP=1155;set=Intersection	GT:AD:AF:DP	1/1:1,1133:1.00:1134
chr17	26856261	rs548973	A	G	19090.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,756:1.00:756
chr17	26857737	rs12451259	C	T	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	26857788	rs12449554	T	C	7038.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	26861564	rs2286521	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	26861618	rs9889455	A	G	1546.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.64;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	26864302	rs532648	G	C	17786.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,660:1.00:660
chr17	26883313	rs631905	A	G	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr17	26900817	rs145671545	T	C	24603.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.123;ClippingRankSum=0.000;DB;DP=975;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=0.868;SOR=0.117;set=HC	GT:AD:AF:DP	1/1:2,957:1.00:959
chr17	26904517	rs652677	C	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	26916120	.	A	AT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.335;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr17	26916178	.	G	A	738.77	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	26922308	.	A	AGT	786.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	26947652	rs688536	G	A	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	26970709	rs115652883	T	C	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	26971053	.	A	T	4423.77	.	AC=2;AF=1.00;AN=2;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	26988101	.	TA	T	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=2.164;QD=2.30;ReadPosRankSum=-0.215;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr17	27050799	rs78234209	A	G	11913.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:2,471:1.00:473
chr17	27050924	rs368186775	AAT	A	123.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr17	27055913	.	G	T	3141.77	.	AC=2;AF=1.00;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr17	27061704	.	C	CA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.905;QD=0.93;ReadPosRankSum=-0.020;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:90,23:0.20:113
chr17	27076624	rs35760160	G	A	11878.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr17	27093475	rs72048305	T	TA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=0.62;ReadPosRankSum=2.797;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:128,29:0.18:157
chr17	27183732	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-0.457;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr17	27185827	rs2242345	C	T	8902.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr17	27207571	rs1060244	C	T	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	27210253	rs6505095	T	C	8671.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	27213076	rs57069941	C	CG,CGG	1547.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.94;MQRankSum=-0.100;QD=29.76;ReadPosRankSum=1.552;SOR=1.519;set=HC	GT:AD:AF:DP	1/2:2,11,39:0.21,0.75:52
chr17	27216152	rs78073990	G	A	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	27228786	rs115755544	C	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	27246368	rs68042462	CCTCCCCTCCTTGATCCTAACATT	C	1497.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	27286851	rs1976165	T	C	7976.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr17	27290969	rs11450637	T	TG	2467.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	27306661	rs62068969	G	A	7723.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr17	27379121	rs4795491	G	A	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	27613677	rs12452857	G	A	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr17	27835138	rs508706	C	T	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	27835211	rs622096	A	C	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	27857698	rs536327	C	T	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	27869968	rs507577	G	A	17877.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,694:1.00:694
chr17	27893015	rs2292973	G	A	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	27895682	rs200199476	GC	G	1052.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.38;QD=36.30;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	27898828	rs565977	T	C	15607.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr17	27901975	rs550818	A	G	20690.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	1/1:0,802:1.00:802
chr17	27904322	rs601364	A	G	12695.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr17	27904617	rs2278217	C	A	20930.77	.	AC=2;AF=1.00;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	1/1:0,796:1.00:796
chr17	27904711	rs11080105	G	A	23717.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.102;ClippingRankSum=0.000;DB;DP=922;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=0.459;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:1,906:1.00:907
chr17	27905673	rs563976	A	G	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	27910706	rs2303623	C	T	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	27949934	rs77991986	G	GC	2390.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	28011501	rs11307211	TA	T	753.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=7.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=1.718;SOR=2.409;set=HC	GT:AD:AF:DP	0/1:14,67:0.83:81
chr17	28011503	.	A	T	341.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=6.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.333;SOR=1.933;set=HC	GT:AD:AF:DP	0/1:44,37:0.46:81
chr17	28029938	rs3102560	T	C	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	28120887	rs72823964	C	T	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	28268800	rs4567782	A	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	28296327	rs9897794	T	G	7210.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr17	28320248	rs4795524	T	A	11187.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr17	28434826	rs5819880	ACTTTT	A	582.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr17	28444183	rs6505162	A	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	28444254	rs8067576	T	A	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	28505024	rs7221154	G	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	28511978	rs1979572	G	A	9675.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr17	28538532	rs140701	C	T	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	28549898	rs6354	G	T	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	28549978	rs25528	G	T	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	28706616	.	C	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=37.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.16;ReadPosRankSum=-2.855;SOR=4.609;set=HC	GT:AD:AF:DP	0/1:235,9:0.04:244
chr17	28778720	rs2253256	G	C	8753.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	28811658	rs5819903	G	GT,GTT	1302.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.933;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.36;ReadPosRankSum=0.000;SOR=1.888;set=HC	GT:AD:AF:DP	1/2:2,48,14:0.75,0.22:64
chr17	28811834	.	G	GT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.28;ReadPosRankSum=-1.042;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:139,31:0.18:170
chr17	28890203	rs216455	T	C	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	28900708	rs3764416	G	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=23.67;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	28901151	rs11080128	G	C	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;MQ=57.71;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	28960991	.	CT	C	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=1.330;QD=3.40;ReadPosRankSum=1.180;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:49,46:0.48:95
chr17	29161990	rs143006132	C	T	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	29171137	rs376234876	GTATT	G	47.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,4:0.12:32
chr17	29195444	rs201420202	CT	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=1.625;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr17	29221227	rs9898911	A	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	29221277	rs62070652	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	29226630	rs28539246	T	A	987.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	29226652	rs9897628	A	G	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	29258846	.	C	CA	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.911;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:85,42:0.33:127
chr17	29271832	rs2232272	A	T	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	29482878	rs2269855	G	A	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.26;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	29486152	rs2952976	G	A	8543.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	29496819	rs2905807	C	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	29508775	rs1801052	G	A	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	29508819	rs71142032	A	AT	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.804;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr17	29509791	rs2953000	C	T	195.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	29545987	rs67472948	A	AT	1949.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	29546175	rs2905880	T	C	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	29553336	rs141114572	G	GAC	785.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr17	29646032	rs1129506	G	A	10435.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	29647358	rs3837848	A	AT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.051;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr17	29653293	rs9894648	T	C	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	29654876	rs2285894	T	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	29663614	.	GT	G	44	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=0.9999;HP=12;HapScore=2;MGOF=29;MMLQ=25;MQ=60.0;NF=4;NR=1;PP=44;QD=10.6;SC=TGAGTCCCATGTTTTTTTTTT;SbPval=0.93;Source=Platypus;TC=19;TCF=11;TCR=8;TR=5;WE=29663622;WS=29663604;set=Platypus	GT:AD:AF:DP	1/1:14,5:0.26:19
chr17	29663624	rs7406038	T	A	194.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.135;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr17	29663625	rs7406039	T	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.17;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	29670190	rs7405740	C	G	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	29675971	rs2525569	T	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	29679246	rs964288	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	29684553	rs7350943	C	T	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	29705947	rs2525574	T	C	13917.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr17	29815404	rs8075239	T	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	29843695	rs4349207	C	T	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	29844658	rs3744619	C	G	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	29844909	rs3744618	A	G	7855.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	29848450	rs2301684	G	T	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr17	29899005	.	G	GT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.192;QD=0.40;ReadPosRankSum=0.722;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:106,20:0.16:126
chr17	30183663	rs71142094	G	GC	859.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	30183857	rs8068049	T	C	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	30185565	rs9906443	G	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	30185892	rs11542477	A	G	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	30186375	.	C	CGGGGGCGGGGCGGCGCA	1243.73	.	AC=2;AF=1.00;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=44.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	30216514	.	A	ATT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=0.605;QD=5.79;ReadPosRankSum=-0.528;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr17	30222002	rs3760454	T	C	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	30509939	rs6505286	C	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	30593336	rs9889253	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	30980972	rs2249638	G	A	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	31039255	rs11080184	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	31072453	rs6505311	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	31082747	rs4548927	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	31107845	rs10512439	A	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	31258686	rs72817027	G	C	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	31266419	rs2726134	T	C	9259.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.24;SOR=1.184;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	31266438	rs377006515	A	AAAGG,AAAAGG	11281.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.86;QD=44.07;SOR=1.040;set=HC	GT:AD:AF:DP	1/2:0,208,48:0.81,0.19:256
chr17	31319024	rs2188953	A	C	9368.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.82;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	31319033	rs3922357	G	C	8767.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	31319092	rs2188952	T	G	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	31319204	rs10591674	CAA	C	77.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.66;ReadPosRankSum=-1.803;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:4,5:0.56:9
chr17	31323728	rs140981292	A	AG	1798.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	31344549	rs2074215	T	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	31350741	rs75112067	C	T	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	31355227	rs58042873	A	AG	1127.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	31438905	rs9916605	C	T	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	31439097	rs140895516	AAG	A	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-1.819;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:91,11:0.11:102
chr17	31618551	rs9890913	G	A	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	31618732	rs9893935	A	G	9145.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr17	32583132	rs2857657	G	C	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.21;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	32583269	rs4586	T	C	12149.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr17	32583911	rs13900	C	T	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	32684991	rs2072069	G	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	32688712	rs159271	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	32904480	rs887231	G	A	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	32904586	rs887230	C	T	9867.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	32908064	rs4795938	T	C	11662.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr17	32908210	rs7218304	T	C	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	32908217	rs7212426	G	A	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=1.297;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	32965275	.	AC	A	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=0.257;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:80,19:0.19:99
chr17	33288882	rs931196	T	G	13062.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr17	33307700	rs57311484	GC	G	2669.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	33309982	rs58611631	C	CT	675.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-0.441;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:55,56:0.50:111
chr17	33433820	rs936656	A	G	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	33469279	rs1471615	G	C	8086.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	33475379	rs150050433	C	T	7285.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	33680807	rs9897352	G	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.61;QD=30.62;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	33680840	rs28571667	T	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.57;QD=26.34;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	33689926	rs4796077	T	C	14866.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr17	33690466	rs12453150	C	A	8182.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	33690863	rs4796078	G	T	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	33748870	rs17548916	C	G	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	33749546	rs2586514	A	G	9499.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.87;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr17	33768354	rs3744371	C	T	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	33768383	rs11657183	T	A	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.90;QD=26.27;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	33768937	rs114866073	C	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.378;MLEAC=1;MLEAF=0.500;MQ=44.24;MQRankSum=-1.895;QD=15.57;ReadPosRankSum=1.956;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr17	33769034	rs62078110	G	A	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.511;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=5.683;MLEAC=1;MLEAF=0.500;MQ=47.86;MQRankSum=-4.872;QD=6.09;ReadPosRankSum=1.437;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:107,64:0.37:171
chr17	33772550	rs76192030	C	T	13327.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:1,497:1.00:498
chr17	33805150	rs2304968	T	C	6792.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	33806863	rs12451746	G	A	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	33807250	rs9905892	T	A	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	33814735	rs10626701	G	GAA	14336.73	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=43.84;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	33875262	rs8073060	T	A	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.070;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	33880305	rs79007502	T	C	13120.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,503:1.00:503
chr17	33881769	rs66959492	TA	T	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.222;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.041;QD=3.79;ReadPosRankSum=-0.218;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr17	33884804	rs10512472	T	C	7743.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	33902635	rs1037590	G	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	33921160	rs225305	C	T	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	33963611	rs11345348	AT	A	625.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	33968871	rs225270	A	T	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	34009889	rs200828221	A	AATT	6711.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:9,161:0.95:170
chr17	34067892	rs12944858	G	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	34090916	.	A	AAAAT	2582.73	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:8,63:0.89:71
chr17	34100350	rs58543174	G	GC	15928.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=40.12;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	34305048	rs7216969	G	A	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	34305071	rs11080368	C	A	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	34305164	rs11080369	A	C	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	34311387	rs16971802	T	C	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	34325532	rs2075746	T	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	34328461	rs854625	A	G	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	34328542	rs2293788	G	A	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	34340161	rs1734953	T	A	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.142;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	34416665	rs1719133	A	G	13637.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr17	34431287	rs1049750	G	T	9583.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:1,371:1.00:372
chr17	34431961	rs1719146	T	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.56;QD=23.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	34432125	rs1719147	A	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=24.62;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	34524040	.	G	A	1073.77	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.68;QD=26.84;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	34842521	rs4796224	A	G	20697.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:0,781:1.00:781
chr17	34862220	rs1109442	T	C	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	34869150	rs6607296	C	A	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	34869155	rs8882	G	A	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	35300494	rs35033250	GA	G	2240.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.790;QD=12.18;ReadPosRankSum=0.531;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:29,155:0.84:184
chr17	35306312	rs2306658	G	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	35346641	rs1045056	T	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	35414006	rs11653434	C	T	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	35478362	rs1470452	T	C	8103.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr17	35486486	rs9789070	C	T	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	35549275	rs2305099	T	C	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	35550158	rs12603097	C	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	35550179	rs12603098	C	T	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	35550448	rs2305097	C	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	35557289	rs11659129	C	T	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	35562546	rs2278679	C	T	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	35581887	rs144469510	TTA	T	345.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:66,22:0.25:88
chr17	35608781	rs72010031	CCT	C	2145.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	35608889	rs1519091	G	A	7774.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr17	35609746	rs2252757	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	35614635	.	C	T	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.514;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=617.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.566;SOR=9.781;set=HC	GT:AD:AF:DP	0/1:175,132:0.43:307
chr17	35632979	rs2542660	C	A	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	35696804	rs58654829	G	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=37.56;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	35696820	rs147333574	AAAAG	A	777.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=45.75;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	35766475	rs72828246	A	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	35771468	rs7211875	C	T	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	35783812	rs7501983	A	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	35818739	rs72441680	TTG	T	893.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.814;QD=19.43;ReadPosRankSum=0.445;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:6,40:0.87:46
chr17	35825459	rs142934801	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.603;QD=0.80;ReadPosRankSum=-1.532;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:54,17:0.24:71
chr17	35900732	.	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.805;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr17	35921502	rs72830410	T	C	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	35936594	rs11654048	T	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	35937793	rs33979367	C	CT	38.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.78;ReadPosRankSum=-0.414;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr17	35956263	rs4795207	T	C	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	35984410	rs7216445	T	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	35988672	rs7224513	C	T	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	35995638	rs4622555	T	A	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	36003275	rs3813911	T	A	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	36003359	rs3813910	A	G	7604.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	36047275	rs1800929	CG	TT	7803.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	36058980	rs2269843	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	36059385	rs12938438	C	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	36061297	rs2074429	C	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	36204767	.	C	CTTAT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=0.000;QD=7.85;ReadPosRankSum=0.200;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr17	36204779	rs79915033	C	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=0.076;QD=7.13;ReadPosRankSum=0.156;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr17	36204788	rs77286110	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.647;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.072;QD=6.25;ReadPosRankSum=-0.458;SOR=2.437;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr17	36233930	rs2677184	G	A	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	36234106	rs2677185	G	A	64.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	36352408	rs11407739	G	GT,GTT	4488.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.658;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=2.858;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.90;MQRankSum=4.427;QD=14.39;ReadPosRankSum=3.741;SOR=0.550;set=HC	GT:AD:AF:DP	1/2:51,208,53:0.67,0.17:312
chr17	36352489	rs4796259	A	C	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=55.71;MQRankSum=0.200;QD=9.75;ReadPosRankSum=1.415;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:80,81:0.50:161
chr17	36352537	rs62074773	A	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.25;QD=28.44;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	36353560	rs111638343	C	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.53;QD=27.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	36353761	rs62074778	C	T	2108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-0.672;QD=10.39;ReadPosRankSum=-0.790;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:95,108:0.53:203
chr17	36357280	rs149632022	TA	T	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-9.106;QD=1.54;ReadPosRankSum=-0.345;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:152,59:0.28:211
chr17	36357295	rs79239780	A	G	2096.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=-0.562;QD=10.08;ReadPosRankSum=0.202;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:102,106:0.51:208
chr17	36357835	rs1848308	G	A	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:105,121:0.54:226
chr17	36358189	rs5820175	GATATATATATAT	G,GATATATATAT	2020.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.844;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.419;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.43;MQRankSum=-1.449;QD=26.24;ReadPosRankSum=-0.116;SOR=0.835;set=HC	GT:AD:AF:DP	1/2:3,60,14:0.78,0.18:77
chr17	36358847	rs77355093	T	A	22941.77	.	AC=2;AF=1.00;AN=2;DB;DP=903;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=25.89;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,886:1.00:886
chr17	36361992	rs201942294	C	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:66,63:0.49:129
chr17	36374963	rs11389346	TA	T	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=1.947;QD=5.46;ReadPosRankSum=-0.918;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:29,35:0.55:64
chr17	36384810	rs142086381	A	G	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.701;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=10.92;ReadPosRankSum=1.538;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:52,62:0.54:114
chr17	36384868	rs71252892	C	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr17	36398156	rs147730015	ACACACACACC	A	2397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.59;MQRankSum=0.285;QD=4.90;ReadPosRankSum=6.425;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:342,147:0.30:489
chr17	36474721	.	C	CT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.16;ReadPosRankSum=0.604;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:168,31:0.16:199
chr17	36495461	rs116838562	G	T	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	36584628	.	G	GGGC	211.80	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.36;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	36614524	rs16965349	G	A	10557.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	36614563	rs16965350	C	T	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:4,206:0.98:210
chr17	36617210	rs9898977	A	G	15148.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.67;ReadPosRankSum=-0.234;SOR=0.488;set=HC	GT:AD:AF:DP	1/1:3,611:1.00:614
chr17	36638179	rs144390029	G	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.09;QD=25.69;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	36638388	rs11867891	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=24.71;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	36638695	rs139165577	G	T	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=26.51;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	36642473	rs71138626	CT	C	1628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-0.694;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:42,150:0.78:192
chr17	36646291	rs12937928	A	G	7626.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	36646386	rs9891156	A	G	7998.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr17	36666551	rs62074752	T	C	5680.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	36718610	rs6503709	T	A	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	36731049	.	C	CA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.894;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:59,17:0.22:76
chr17	36734700	rs7503695	T	C	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	36734706	rs144253512	CAGCCGG	C	6222.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	36760878	rs62077547	C	T	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	36861983	rs17855918	T	C	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	36889466	rs5820264	G	GCCTGC	13132.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.11;SOR=1.332;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	36894839	rs1138349	G	A	10469.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,438:1.00:438
chr17	36895206	rs2075056	A	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	36896746	rs12601476	T	C	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	36909061	rs228274	A	G	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	36927690	rs25540	C	CTAAG	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	36932200	rs228293	C	G	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	36934475	rs7207178	C	T	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	36993655	rs645686	T	C	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	36997288	rs595306	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	36997461	rs7210156	G	A	8340.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr17	37010130	rs1124927	C	G	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	37010150	rs923370	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	37075286	rs144614922	A	AGGGCGAGGCCCGTGG	20569.73	.	AC=2;AF=1.00;AN=2;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=45.41;SOR=1.504;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr17	37076331	rs646097	G	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	37101380	rs9906595	T	C	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	37228765	rs9907595	A	G	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	37234111	rs3744078	G	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	37239671	rs9891236	A	G	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	37253316	rs4795349	G	A	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	37261981	rs3744351	T	C	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	37265378	rs16490	C	T	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	37317672	rs511163	C	G	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	37357653	.	C	CT	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=2.041;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:134,60:0.31:194
chr17	37359427	rs59332263	AT	A	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.407;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.471;QD=3.52;ReadPosRankSum=0.664;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:68,66:0.49:134
chr17	37371141	rs8070891	G	C	23031.77	.	AC=2;AF=1.00;AN=2;DB;DP=915;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,882:1.00:882
chr17	37396201	rs34473775	G	T	6855.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	37396523	rs34183032	CT	C	136.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.908;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.230;QD=9.12;ReadPosRankSum=0.778;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr17	37399364	rs2338795	T	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	37399379	rs2879258	G	T	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	37401051	rs11078895	A	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	37410700	rs752314	C	T	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	37410892	rs2879259	C	G	7415.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	37417575	rs3744348	C	G	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	37421767	rs2061338	T	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	37425238	rs1966916	T	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	37425262	rs1966915	A	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	37427114	rs11307198	TA	T	691.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.836;QD=10.98;ReadPosRankSum=0.170;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:8,55:0.87:63
chr17	37580140	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.942;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr17	37580203	rs7405667	T	C	240.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	37587534	rs35691977	CT	C	1350.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:10,88:0.90:98
chr17	37671910	rs8070799	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.93;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	37783787	rs3751903	C	G	10417.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr17	37814080	rs1877031	G	A	14072.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,552:1.00:552
chr17	37815899	rs11658786	G	A	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,281:1.00:282
chr17	37821435	rs931992	G	T	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	37822311	rs1053651	A	C	14150.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr17	37829129	rs2247862	A	G	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	37830447	rs2934956	T	A	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	37830900	rs2941504	A	G	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	37831035	rs1565922	A	G	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,154:0.99:155
chr17	37855713	.	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.966;QD=0.48;ReadPosRankSum=-0.512;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr17	37866005	rs1810132	C	T	22141.77	.	AC=2;AF=1.00;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	1/1:0,863:1.00:863
chr17	37868715	rs4252627	C	T	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	37879762	rs903506	G	A	9196.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr17	37884037	rs1058808	C	G	8866.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	37898543	rs2952142	T	C	19370.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,760:1.00:760
chr17	37902887	rs150443878	GAAAAAGAAAAAGA	G	3871.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.89;QD=42.55;SOR=2.435;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	37921899	rs2952141	C	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	37922259	rs907092	G	A	12365.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr17	37985801	rs3816470	A	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	38020419	rs1453559	T	C	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	38024626	rs11557466	C	T	10699.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr17	38028634	rs11557467	G	T	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	38031674	rs10852935	C	T	8432.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr17	38031714	rs10852936	C	T	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.558;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	38062196	rs2305480	G	A	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	38062217	rs2305479	C	T	9824.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr17	38063381	rs883770	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	38064405	rs11078927	C	T	11854.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:1,463:1.00:464
chr17	38064469	rs11078928	T	C	12921.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:1,498:1.00:499
chr17	38066240	rs2290400	T	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	38066267	rs1008723	G	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	38101140	rs377232669	TTC	T	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.450;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:128,18:0.12:146
chr17	38122680	rs7212938	G	T	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	38122686	rs7212944	G	A	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.31;SOR=1.793;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	38122708	rs9914973	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	38126911	rs10531136	AACACACAC	A,AAC	1981.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=66;set=Intersection	GT:AF:DP	1/2:0.18,0.82:49
chr17	38127713	rs3916061	A	G	4483.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	38128584	rs5820314	A	AG	1772.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	38128765	rs8077456	G	C	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	38137364	rs3087852	G	A	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	38140524	rs3816471	T	C	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	38142677	rs3816472	A	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	38145088	rs9915252	C	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	38146482	rs11405679	C	CT,CTT	2495.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=3.164;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=1.674;SOR=0.474;set=HC	GT:AD:AF:DP	1/2:66,113,68:0.46,0.28:247
chr17	38146542	rs3744245	C	G	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	38152304	rs8071037	A	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=24.52;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	38152373	rs35244421	CA	C	353.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.493;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.490;QD=10.70;ReadPosRankSum=-1.527;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr17	38153473	rs12453334	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	38153554	rs2241244	G	C	11788.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr17	38153714	rs10671123	T	TGA	18185.73	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr17	38172192	rs2227324	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	38172305	rs2071369	T	C	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	38172452	rs2071370	T	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	38172942	rs2227338	A	G	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	38173143	rs25645	G	A	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	38176256	rs2270401	A	T	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	38176476	rs9899955	A	G	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	38178149	rs2302776	A	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	38179492	rs2302777	A	G	13462.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:1,520:1.00:521
chr17	38179667	rs2302778	A	G	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	38183090	rs2302774	G	T	8955.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	38184367	.	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.520;QD=1.82;ReadPosRankSum=0.938;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr17	38188419	rs3935281	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	38188844	rs7502514	A	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	38189049	rs4072639	G	A	14295.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	38189055	rs3935280	A	G	13995.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	38189793	rs11078934	T	C	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	38192137	rs11078935	T	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	38251385	rs141144358	A	AT	2449.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	38252582	.	G	GT	1125.73	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	38252667	rs939346	G	A	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	38256185	rs4795424	A	C	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	38256401	rs17616365	G	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	38278827	rs192858632	C	T	8113.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.632;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=9.149;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.29;ReadPosRankSum=-0.554;SOR=0.117;set=HC	GT:AD:AF:DP	1/1:3,331:0.99:334
chr17	38282624	rs28526298	C	T	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	38282670	rs140328859	A	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	38285693	rs143879261	C	A	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	38289419	rs74939788	T	G	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	38290022	rs17678817	C	T	7815.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:1,301:1.00:302
chr17	38297325	rs79777572	A	G	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	38297544	rs113161637	T	TCATCTATTTC	3950.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=43.90;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	38297716	rs41283417	T	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	38319728	rs112472335	T	TTG	1142.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	38324766	rs11327454	AT	A	360.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	38324782	rs112500395	AT	A	265.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	38325943	rs9909811	G	C	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	38328208	rs148396384	C	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	38334104	.	C	CG	1227.73	.	AC=2;AF=1.00;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	1/1:4,51:0.93:55
chr17	38334359	rs66989091	A	AG	1603.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	38337468	rs75157020	A	T	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	38337818	rs45612441	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	38451739	.	TA	T	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.460;QD=1.32;ReadPosRankSum=0.744;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr17	38519291	rs502041	C	G	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	38556770	rs471692	T	C	6521.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	38563298	rs111645192	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	38563710	rs558068	C	G	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	38566396	rs2715548	G	A	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	38572366	rs2586112	G	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	38609431	rs5820347	G	GAC	3097.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:6,90:0.94:96
chr17	38785194	rs142193069	C	T	8105.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr17	38786451	rs4890092	A	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	38813462	rs56178748	C	CAAA	50	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.68;QD=12.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	38813824	rs8068721	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	38813828	rs11412331	G	GT	358.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	38816526	rs917593	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	38816536	.	C	CT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.221;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr17	38816595	rs2008469	T	C	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	38857975	.	GTATATATATATATATATATATATATATATATATATATATA	G,GTA	1194.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=51;set=Intersection	GT:AF:DP	1/2:0.24,0.70:33
chr17	38906640	.	T	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=1.574;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:240,56:0.19:296
chr17	38910970	.	C	CAAAA	134.80	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	38953540	rs3813038	A	G	17895.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	1/1:0,710:1.00:710
chr17	38954687	rs9914044	C	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	38955961	rs4624233	G	A	13809.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:1,535:1.00:536
chr17	38975103	.	A	AGCTGCCGCCGCCGTATCCGCCGCCGGAGCTGCTGCCGCCGCCGTATCCGCCGCCGGAGCT	9358.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.738;ClippingRankSum=0.000;DP=662;ExcessHet=3.0103;FS=5.159;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=46.33;ReadPosRankSum=1.130;SOR=3.270;set=HC	GT:AD:AF:DP	1/1:4,198:0.98:202
chr17	38975328	rs17855579	G	A	3279.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.48;ReadPosRankSum=-0.615;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:2,132:0.99:134
chr17	38976998	rs1799873	G	A	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	38978536	rs4261597	A	C	37756.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=1455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=-0.481;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:2,1431:1.00:1433
chr17	38978767	.	C	T	2860.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.364;QD=21.84;ReadPosRankSum=-1.486;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:9,122:0.93:131
chr17	38990834	rs2240078	G	C	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	38991003	rs10558	T	C	12356.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr17	38991032	rs6694	T	A	12269.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr17	39033467	rs1894409	T	C	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	39033672	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.838;QD=0.86;ReadPosRankSum=0.275;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr17	39081546	rs2269860	A	G	190.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	39081713	rs8037	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	39084504	rs9257	T	C	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	39114962	rs7213256	C	T	6933.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	39118553	rs4890151	C	T	9282.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr17	39119942	rs17843020	G	A	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	39122797	rs10491137	G	A	11877.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,456:1.00:456
chr17	39123131	rs5820378	G	GT	3566.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	39134455	rs2271277	G	A	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	39134528	rs16968862	G	A	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	39134561	rs2271278	C	T	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	39134576	rs2271279	A	C	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.93;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	39134585	rs2271280	G	A	5213.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.14;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	39134590	rs2271281	G	C	5098.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	39135084	rs8064733	A	G	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	39135205	rs8064910	A	G	8031.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;MQRankSum=-0.139;QD=25.02;ReadPosRankSum=-1.138;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:2,319:0.99:321
chr17	39135214	rs8068970	T	C	14111.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=43.96;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	39135322	rs8068223	C	T	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	39137104	rs9908389	A	G	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	39137154	rs721958	C	G	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	39137297	rs721957	C	T	11412.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:1,452:1.00:453
chr17	39137387	rs2010027	C	T	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	39137553	rs8074364	T	G	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr17	39138436	rs11078972	A	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	39138476	rs11078973	CG	TA	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	39138712	rs4243257	G	A	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	39139256	rs9910558	A	T	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	39139274	rs34812152	A	T	5150.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.54;ReadPosRankSum=-0.089;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:2,122:0.98:124
chr17	39139279	rs35072663	A	T	5149.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.53;ReadPosRankSum=0.169;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:2,122:0.98:124
chr17	39139370	rs9908304	G	A	8006.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	39139413	rs9910145	C	A	8306.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr17	39139430	rs9908522	G	A	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	39139961	rs6503570	C	T	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	39140221	rs1510068	C	T	12201.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr17	39140417	rs1510069	T	C	12994.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,505:1.00:505
chr17	39150357	rs1989365	A	G	13447.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr17	39150443	rs2010209	G	A	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	39156224	rs3813051	C	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	39165174	rs112432710	G	A	8064.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	39165358	.	G	GAGA	4042.73	.	AC=2;AF=1.00;AN=2;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	39186031	rs8074117	C	T	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	39186168	rs8074887	A	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	39186220	rs8073323	G	A	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	39186382	rs8077277	G	A	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	39190954	.	G	GCAGCAGCTTGGCTGGCAGCAGCTGGTCTCA	5232.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.651;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=7.844;MLEAC=2;MLEAF=1.000;MQ=58.04;MQRankSum=-1.008;QD=93.44;ReadPosRankSum=1.193;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:2,54:0.96:56
chr17	39240426	rs11658607	G	A	11983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.399;ClippingRankSum=0.000;DB;DP=906;ExcessHet=3.0103;FS=3.356;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=-4.010;QD=13.24;ReadPosRankSum=-5.256;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:342,563:0.62:905
chr17	39240504	rs11655310	A	G	25486.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.18;QD=42.41;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,601:1.00:601
chr17	39240504	.	AGCCAAGA	GGCCAAGA,GGCCAAGT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=12;MMLQ=23;MQ=44.41;NR=227,176;PP=941,2944;QD=2.19768291114;SC=CCAGGGCTGCAGCCAAGACCT;SbPval=0.56;Source=Platypus;TC=445;TCF=218;TCR=227;WE=39240519;set=Platypus	GT:AF:DP	0/1:1.00:445
chr17	39240511	rs383835	A	T	12174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.575;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=4.454;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=8.043;QD=20.60;ReadPosRankSum=8.837;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:67,524:0.89:591
chr17	39240549	rs200397258	C	G	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-8.242;QD=1.45;ReadPosRankSum=-0.689;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:585,67:0.10:652
chr17	39240560	rs200090467	T	C	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-9.952;QD=1.60;ReadPosRankSum=3.562;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:565,68:0.11:633
chr17	39240661	rs11650484	C	G	17225.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr17	39254318	rs138296121	C	T	20875.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr17	39254335	rs201764113	A	AT	20213.73	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr17	39254444	rs6416913	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	39257791	.	TGAGGGGAGGG	T	729.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=42.93;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	39257900	.	G	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-0.464;QD=3.77;ReadPosRankSum=-2.234;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr17	39257950	.	G	GGGGAAGGGAGGGGAAGGGGTGGGGAA	1124.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.88;QD=187.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	39258344	rs148931560	A	G	8623.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=25.67;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	39258515	rs144763263	G	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	39261560	rs349792	T	A	201.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.83;QD=28.83;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	39261611	rs11654665	G	A	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.67;QD=26.25;SOR=1.210;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	39261742	.	CTGCAGGACCACCTGCTGCCGCCCCAGCTGTTGTGTATCCAGCTGCTGCAGGCCCCAGTGCTGCCAGTCTGTGTGCTGCCAACCCACTTGTTCCCGCCCCAGCTGCTGTCAGACCACCTGT	C	5433.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DP=459;ExcessHet=3.0103;FS=1.360;MLEAC=2;MLEAF=1.000;MQ=53.98;MQRankSum=3.345;QD=13.76;ReadPosRankSum=-0.256;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:8,387:0.98:395
chr17	39261933	rs7207685	C	T	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.08;QD=42.54;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	39261949	rs7212474	T	C	5955.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.12;QD=42.24;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	39262083	rs75392608	A	C	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=52.36;MQRankSum=-9.401;QD=2.27;ReadPosRankSum=-0.371;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:223,58:0.21:281
chr17	39273998	rs150942763	A	G	11847.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.60;QD=43.88;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	39274006	rs140898464	A	C	11592.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.44;QD=44.59;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	39274087	rs141357429	G	C	1199.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.647;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=11.784;MLEAC=2;MLEAF=1.000;MQ=44.39;MQRankSum=0.061;QD=21.82;ReadPosRankSum=-2.333;SOR=3.398;set=HC	GT:AD:AF:DP	1/1:6,49:0.89:55
chr17	39274491	rs113376601	C	T	25610.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr17	39274518	rs9897031	C	T	26363.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr17	39296793	rs74821181	G	A	9636.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr17	39305956	rs1497383	G	A	11777.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:9,459:0.98:468
chr17	39333956	rs377518	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	39334133	rs389784	T	C	8116.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	39334456	rs493514	G	A	10847.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.645;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.06;MQRankSum=-0.236;QD=25.95;ReadPosRankSum=1.156;SOR=0.666;set=HC	GT:AD:AF:DP	1/1:1,417:1.00:418
chr17	39340597	rs452216	G	A	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	39340707	rs398825	C	T	10606.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr17	39340795	.	ACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	A	6561.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;MQRankSum=-0.533;QD=36.86;ReadPosRankSum=0.356;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:2,176:0.99:178
chr17	39340812	.	T	C	2124	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=2;HapScore=1;MMLQ=26;NF=30;NR=60;PP=2124;QD=23.9863468061;SC=CAGCTGGACATACCACAGCTG;Source=Platypus;TCF=31;TR=90;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:2,90:0.98:92
chr17	39340826	.	T	C	1390	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=6;HapScore=1;MGOF=36;MMLQ=23;MQ=54.98;NF=29;NR=43;PP=1390;QD=19.7884890632;SC=ACAGCTGGGGTGGCAGGTGGT;SbPval=0.48;Source=Platypus;TC=74;TCF=29;TCR=45;TR=72;WE=39340834;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:2,72:0.97:74
chr17	39340843	.	GCAGAGTGGG	ACAGACTGGG,ACAGAGTGGA	1480	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=46;MMLQ=26;MQ=55.39;NF=4,19;NR=17,14;PP=902,1480;QD=45.4984702315;SC=TGGTCTGACAGCAGAGTGGGC;SbPval=0.97;Source=Platypus;TC=72;TCF=28;TCR=44;TR=21,33;WE=39340860;WS=39340833;set=Platypus	GT:AF:DP	0/1:0.29:72
chr17	39340910	rs2320231	T	C	5905.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	39341158	rs452531	G	A	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	39341266	rs449817	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	39341294	rs385122	T	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	39346518	rs238824	T	C	15393.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.290;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;MQRankSum=0.151;QD=26.18;ReadPosRankSum=-0.065;SOR=0.261;set=HC	GT:AD:AF:DP	1/1:1,587:1.00:588
chr17	39346595	rs11283848	T	TGCTGTGGGTCCAGCTGCTGCCAGCCTA	7627.73	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=37.21;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	39406409	rs2191379	C	A	15258.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr17	39406447	rs3967754	A	G	12111.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr17	39432562	rs9893993	A	T	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	39458765	rs1005197	A	G	10057.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr17	39459167	rs1005196	G	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	39504990	rs149298345	G	T	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	39522910	.	C	CA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-1.196;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:189,39:0.17:228
chr17	39535859	rs2239710	A	G	16739.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr17	39580559	rs9916475	T	A	21364.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=44.60;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,479:1.00:479
chr17	39580562	rs9916484	T	C	21488.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=44.96;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	39580660	rs9916724	T	C	6997.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	39580739	rs9910204	C	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	39593620	rs9894044	T	C	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	39593768	rs897416	A	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	39593872	rs897415	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	39594679	rs7209968	A	G	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	39595116	rs9894668	G	T	22801.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.441;ClippingRankSum=0.000;DB;DP=890;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.74;ReadPosRankSum=0.417;SOR=0.082;set=HC	GT:AD:AF:DP	1/1:3,883:1.00:886
chr17	39596611	rs1350046	T	C	14064.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr17	39616430	rs2604953	G	T	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr17	39620565	rs72830046	C	T	22774.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.092;ClippingRankSum=0.000;DB;DP=904;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=1.827;SOR=0.608;set=HC	GT:AD:AF:DP	1/1:3,881:1.00:884
chr17	39622068	rs2071561	G	T	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	39623363	rs3744786	T	C	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	39623622	rs1807434	A	C	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	39623708	rs737487	C	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	39633317	rs2239711	A	G	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	39633349	rs2071601	G	C	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	39634625	rs7216017	A	G	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	39636044	rs2011243	G	A	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	39637244	rs743686	A	G	7797.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	39643646	rs2301354	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	39644057	rs2301353	G	A	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr17	39646021	rs1003842	A	G	10974.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr17	39659091	rs61126695	T	C	12703.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:2,499:1.00:501
chr17	39659194	rs4796697	T	C	12371.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr17	39660005	rs73986307	T	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	39661366	rs760134	G	C	12316.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr17	39670912	rs897420	G	C	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	39671045	rs897421	T	C	7898.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	39674641	rs1050784	T	C	9133.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	39680580	rs1869719	A	C	11741.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr17	39680796	rs1869720	T	A	8298.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	39681475	rs4601	A	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=25.80;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	39684321	rs4602	G	C	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	39684410	rs11550883	G	A	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	39723451	rs6503636	A	G	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	39723990	rs3890472	T	A	9173.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr17	39724047	rs1008753	T	C	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	39726276	rs3816510	C	A	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	39727816	rs8075921	T	G	21418.77	.	AC=2;AF=1.00;AN=2;DB;DP=852;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,830:1.00:830
chr17	39728050	rs8070680	G	A	45036.77	.	AC=2;AF=1.00;AN=2;DB;DP=1737;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,1720:1.00:1720
chr17	39740303	rs200977988	A	ATC	898.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.334;MLEAC=2;MLEAF=1.000;MQ=59.89;MQRankSum=0.000;QD=17.97;ReadPosRankSum=0.519;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:4,46:0.92:50
chr17	39742894	rs3826551	G	A	16364.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=43.76;SOR=1.024;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	39742898	rs11551758	GC	AT	16148.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=45.62;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr17	39766504	rs7406899	A	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr17	39767744	rs4796681	A	G	5883.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	39767836	rs2100509	G	A	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	39871700	rs7220169	G	A	7257.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	39874075	rs7213435	C	A	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	39874137	rs7212417	G	A	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	39874267	rs7218465	T	A	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	39874283	rs11079007	T	A	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	39881289	rs8075017	G	C	50520.77	.	AC=2;AF=1.00;AN=2;DB;DP=1926;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,1904:1.00:1904
chr17	39881487	rs11869104	T	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	39883350	rs4523977	G	A	8852.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr17	39883559	rs33914436	G	A	6411.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	39883595	rs7216154	T	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	39883972	rs4796600	C	T	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	39884091	rs4796601	G	C	28720.77	.	AC=2;AF=1.00;AN=2;DB;DP=1101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,1093:1.00:1093
chr17	39884246	rs4796602	G	A	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	39884419	rs4796692	C	T	19118.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,726:1.00:726
chr17	39884583	rs4796693	G	A	8655.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	39884684	rs4796694	C	T	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	39888455	rs3895103	G	C	13367.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,522:1.00:522
chr17	39890715	rs4796603	A	T	9713.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr17	39890876	rs4796604	T	C	5016.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.193;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.86;ReadPosRankSum=-0.783;SOR=0.374;set=HC	GT:AD:AF:DP	1/1:1,193:0.99:194
chr17	39912145	rs1126821	T	A	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	39912259	rs141010071	A	AC	841.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	39912581	rs9890858	A	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	39913645	rs7216034	T	C	10337.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr17	39914070	rs8067890	G	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	39923614	rs12942034	A	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	39925925	rs7405731	A	G	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	39959189	rs1065029	C	G	6887.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	39959511	rs3809877	C	T	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	39969549	rs72835680	C	T	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	39977862	rs8072866	C	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	39983644	rs9896766	A	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	39983808	rs1046404	G	C	8796.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr17	39983820	rs1046403	G	A	8798.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr17	39983849	rs1128966	G	C	9239.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr17	39987130	rs4796712	T	C	15913.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:1,626:1.00:627
chr17	39988601	rs7208062	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	39991790	rs1319763	C	T	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	39991867	rs3039772	A	ATATC	8641.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	39991988	rs1865841	G	A	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	39998141	rs1529933	C	T	8077.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr17	40003421	rs4796721	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	40010979	rs3744782	G	A	17825.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,699:1.00:699
chr17	40024023	rs7217218	A	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	40024868	rs57604811	AG	A	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-0.745;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr17	40024869	rs12946315	G	A	87.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=1.247;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr17	40024895	rs8079008	A	G	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	40025264	rs9912300	G	T	11690.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr17	40025285	rs9914829	A	G	14721.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,584:1.00:584
chr17	40025453	rs3744779	T	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	40025670	rs3744780	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	40027869	rs1808787	A	T	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	40028450	rs8071627	A	T	11100.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,429:1.00:429
chr17	40028541	rs8071753	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	40028568	rs8071234	C	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	40048613	rs8065502	A	G	6450.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	40049171	rs4796735	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	40049473	rs4796736	A	G	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	40053021	rs11652326	T	C	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	40058204	rs3816121	C	A	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.98;SOR=1.578;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	40058212	rs3816122	G	A	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.38;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	40068613	rs2304499	G	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	40104384	.	C	CAA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.53;ReadPosRankSum=1.465;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr17	40105401	rs77012779	T	TATG	8583.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	40106868	rs57545570	C	CA	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.581;QD=8.35;ReadPosRankSum=-0.197;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:19,40:0.68:59
chr17	40118807	rs4432296	C	T	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	40123829	rs12602950	G	A	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	40146970	rs6503679	G	A	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	40152431	rs374909941	CT	C	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	40169519	rs4796758	G	T	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	40173851	rs9894001	A	C	7016.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	40186128	rs4277396	C	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	40215180	rs4796765	A	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	40261284	rs1557744	G	A	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	40283453	rs146594244	AAC	A	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.488;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr17	40315585	rs201911566	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	40359505	rs377476267	GCACA	G,GCA	2274.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.53;MQRankSum=0.312;QD=28.08;ReadPosRankSum=1.577;SOR=0.675;set=HC	GT:AD:AF:DP	1/2:1,21,59:0.26,0.73:81
chr17	40462796	.	TTG	T	130.73	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,14:0.16:85
chr17	40490539	.	TGACCTGAGGGAATACTCCTG	T	571	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=1;HapScore=1;MGOF=16;MMLQ=25;MQ=64.06;NF=5;NR=17;PP=571;QD=29.262239083;SC=GAATACTCCTTGACCTGAGGG;SbPval=0.5;Source=Platypus;TC=24;TCF=5;TCR=19;TR=22;WE=40490566;WS=40490532;set=Platypus	GT:AD:AF:DP	1/1:2,22:0.92:24
chr17	40619937	rs4796668	A	G	186.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	40639422	rs8069972	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	40642452	rs9899168	T	C	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	40653356	rs72352728	CTTTTG	C	2517.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	40689455	rs659497	T	C	12134.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr17	40689613	rs2071046	G	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	40696233	rs86312	C	G	7702.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.085;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.00;ReadPosRankSum=0.853;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:1,320:1.00:321
chr17	40699291	rs607740	G	A	8090.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	40699332	rs607795	T	C	8132.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,324:1.00:325
chr17	40699475	rs67843205	G	GC	1546.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	40700448	rs2854973	C	G	8610.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,321:0.99:323
chr17	40721505	.	T	C	7831.77	.	AC=2;AF=1.00;AN=2;DP=315;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr17	40722162	rs1474040	G	A	5375.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	40723391	rs2010750	C	T	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	40737117	rs4792992	G	A	11357.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr17	40744320	rs4793253	A	G	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	40812797	rs3835175	C	CT	3921.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	40817448	rs3817331	G	A	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	40817990	rs7225374	G	A	5298.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:3,197:0.98:200
chr17	40822308	rs8071056	C	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	40826525	rs35595844	AAGG	A	1299.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	40848342	rs36083265	AT	A	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=1.377;QD=6.16;ReadPosRankSum=1.195;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr17	40850552	rs112344327	CGT	C	110.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,9:0.22:41
chr17	40874643	.	C	CA	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.547;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:34,27:0.44:61
chr17	40986454	.	GGA	G	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.677;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr17	41046440	rs324079	T	G	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	41063466	rs2229611	T	C	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	41103938	rs534720	T	C	4771.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	41108677	.	C	CTTT	30	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.9910;HP=20;HapScore=2;MGOF=7;MMLQ=23;MQ=53.89;NF=0;NR=3;PP=30;QD=11.0;SC=CCTCTCACCACTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=41108685;WS=41108667;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr17	41113131	rs35166621	CA	C	1174.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	41113543	rs2670865	C	G	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	41116234	rs690941	G	A	16135.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr17	41116291	rs11278824	CAGCCCT	C	5681.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:4,218:0.98:222
chr17	41116565	rs690971	G	T	7101.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.597;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=0.975;SOR=0.254;set=HC	GT:AD:AF:DP	1/1:1,276:1.00:277
chr17	41116723	rs690979	G	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	41121210	rs113173233	GC	G	3155.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.46;ReadPosRankSum=0.515;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:6,123:0.95:129
chr17	41121217	rs7217553	G	A	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	41121263	rs4793187	G	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	41122443	rs2670866	T	C	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	41132578	rs692074	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	41133071	rs1708875	T	C	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	41133242	rs550285	G	A	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	41150983	rs691954	T	C	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	41154817	rs11871636	A	C	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	41164126	rs692651	A	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	41165493	rs588703	A	G	8137.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr17	41165734	rs443759	C	T	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	41165878	rs13229	C	T	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	41167957	rs455055	C	A	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	41170898	rs429464	T	C	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	41170943	rs55845054	GTAA	G	1496.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	41174025	rs2070835	A	C	7288.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	41180772	rs12944458	C	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	41215825	rs3092994	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	41219560	rs8176235	C	T	5382.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	41219780	rs8176234	T	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.52;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	41219804	rs8176233	T	C	185.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	41223094	rs1799966	T	C	5619.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	41226601	rs273900734	G	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	41234304	rs3737559	C	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	41234470	rs1060915	A	G	9324.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr17	41244000	rs16942	T	C	9848.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	41244435	rs16941	T	C	5598.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	41244936	rs799917	G	A	11560.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr17	41245237	rs16940	A	G	14240.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr17	41245466	rs1799949	G	A	10321.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr17	41249094	rs8176145	A	G	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	41249363	rs273902772	TA	T	217.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	41256074	rs368252296	CA	C	317.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.270;QD=11.34;ReadPosRankSum=-0.692;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr17	41256075	.	AAAAAAAAAAAAG	A	221	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=11;HapScore=4;MGOF=2;MMLQ=25;MQ=60.72;NF=9;NR=11;PP=221;QD=11.35;SC=ACTCCATCTCAAAAAAAAAAA;SbPval=0.64;Source=Platypus;TC=21;TCF=10;TCR=11;TR=20;WE=41256110;WS=41256064;set=Platypus	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	41256089	rs373413425	AAAAAAAAAGAAAAG	A	1110.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.23;QD=41.14;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	41277187	rs799905	G	C	29826.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=1292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=24.88;ReadPosRankSum=-0.240;SOR=0.618;set=HC	GT:AD:AF:DP	1/1:7,1192:0.99:1199
chr17	41291779	rs4792978	G	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	41291953	rs11657835	C	G	6475.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	41296197	rs35170910	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	41327621	rs2271573	A	G	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	41327648	rs2271574	T	C	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	41327650	rs3215228	G	GT	2621.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	41327684	rs10684756	C	CTG	6575.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	41330024	rs11657883	T	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	41330265	rs11656945	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	41331306	rs11653460	C	T	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	41331460	rs11653231	G	A	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	41332804	rs9904555	T	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	41346283	rs4793217	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	41352643	rs35995789	C	T	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	41353806	rs2306829	C	T	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	41354888	rs17527933	A	G	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	41355955	rs35909706	CT	C	61.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.15;ReadPosRankSum=-0.917;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr17	41361881	rs11322550	AT	A	932.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.456;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.516;QD=12.60;ReadPosRankSum=0.926;SOR=0.662;set=HC	GT:AD:AF:DP	1/1:8,66:0.89:74
chr17	41361960	rs8482	A	G	6673.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,270:1.00:271
chr17	41364910	rs3803871	A	G	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	41454935	rs2061873	T	C	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	41455232	rs60344336	CT	C	225.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=10.086;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.530;QD=10.26;ReadPosRankSum=0.569;SOR=1.927;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr17	41456413	rs56799554	A	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	41465708	rs78129681	T	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-4.450;QD=11.96;ReadPosRankSum=0.888;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr17	41465717	rs74795002	C	A	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-4.734;QD=11.38;ReadPosRankSum=2.349;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr17	41465721	.	G	A	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.275;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-5.062;QD=11.13;ReadPosRankSum=2.427;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr17	41465722	.	A	G	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-5.213;QD=10.85;ReadPosRankSum=2.029;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr17	41465732	rs111248365	A	T	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.993;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.559;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-5.429;QD=11.38;ReadPosRankSum=2.320;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr17	41465737	rs111809884	G	C	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.205;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.837;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-6.163;QD=12.86;ReadPosRankSum=1.219;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:50,24:0.32:74
chr17	41465747	rs148768102	A	G	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.520;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=10.535;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-6.415;QD=17.36;ReadPosRankSum=-1.824;SOR=1.934;set=HC	GT:AD:AF:DP	0/1:53,40:0.43:93
chr17	41465756	.	C	G	2688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.514;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=23.644;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-5.680;QD=20.07;ReadPosRankSum=-2.504;SOR=2.351;set=HC	GT:AD:AF:DP	0/1:71,63:0.47:134
chr17	41465763	.	C	CTG	3281.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.518;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=42.050;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-5.512;QD=20.64;ReadPosRankSum=-2.723;SOR=2.943;set=HC	GT:AD:AF:DP	0/1:83,76:0.48:159
chr17	41465764	.	CAG	C	3428.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.069;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=43.659;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-5.472;QD=20.29;ReadPosRankSum=-3.221;SOR=2.929;set=HC	GT:AD:AF:DP	0/1:86,83:0.49:169
chr17	41465768	.	TAA	T	4337.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.633;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=45.928;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-5.478;QD=24.37;ReadPosRankSum=-3.342;SOR=3.019;set=HC	GT:AD:AF:DP	0/1:91,87:0.49:178
chr17	41465770	.	A	AGGG	4337.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.043;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=45.928;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-5.478;QD=24.37;ReadPosRankSum=-3.575;SOR=3.019;set=HC	GT:AD:AF:DP	0/1:91,87:0.49:178
chr17	41465778	.	C	G	5447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.532;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=86.431;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-4.735;QD=23.08;ReadPosRankSum=-6.332;SOR=3.837;set=HC	GT:AD:AF:DP	0/1:103,133:0.56:236
chr17	41465783	.	G	C	6145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.412;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=87.386;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-4.714;QD=23.82;ReadPosRankSum=-6.929;SOR=3.769;set=HC	GT:AD:AF:DP	0/1:110,148:0.57:258
chr17	41465784	.	G	C	6229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.226;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=90.420;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-4.584;QD=23.96;ReadPosRankSum=-7.205;SOR=3.798;set=HC	GT:AD:AF:DP	0/1:110,150:0.58:260
chr17	41465788	.	A	G	7093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.819;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=95.647;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-4.684;QD=25.61;ReadPosRankSum=-7.708;SOR=3.816;set=HC	GT:AD:AF:DP	0/1:115,162:0.58:277
chr17	41465806	.	T	C	10164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.210;ClippingRankSum=0.000;DP=389;ExcessHet=3.0103;FS=159.230;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-3.339;QD=26.82;ReadPosRankSum=-9.698;SOR=4.387;set=HC	GT:AD:AF:DP	0/1:141,238:0.63:379
chr17	41465810	.	T	TC	11004.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=14.842;ClippingRankSum=0.000;DP=406;ExcessHet=3.0103;FS=171.537;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-3.131;QD=27.79;ReadPosRankSum=-9.730;SOR=4.500;set=HC	GT:AD:AF:DP	0/1:147,249:0.63:396
chr17	41465811	.	G	GAGCC	11046.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.518;ClippingRankSum=0.000;DP=403;ExcessHet=3.0103;FS=169.738;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-3.047;QD=28.11;ReadPosRankSum=-9.751;SOR=4.475;set=HC	GT:AD:AF:DP	0/1:147,246:0.63:393
chr17	41465823	.	T	A	10296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.614;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=93.439;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-3.312;QD=24.11;ReadPosRankSum=-7.326;SOR=4.560;set=HC	GT:AD:AF:DP	0/1:177,250:0.59:427
chr17	41465829	.	A	G	9738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.703;ClippingRankSum=0.000;DP=427;ExcessHet=3.0103;FS=94.536;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-3.549;QD=23.47;ReadPosRankSum=-6.234;SOR=4.405;set=HC	GT:AD:AF:DP	0/1:186,229:0.55:415
chr17	41465830	.	A	G	9609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.677;ClippingRankSum=0.000;DP=429;ExcessHet=3.0103;FS=95.013;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-3.533;QD=23.05;ReadPosRankSum=-6.510;SOR=4.423;set=HC	GT:AD:AF:DP	0/1:186,231:0.55:417
chr17	41465838	.	A	C	8376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.761;ClippingRankSum=0.000;DP=419;ExcessHet=3.0103;FS=97.324;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-3.534;QD=20.73;ReadPosRankSum=-6.320;SOR=4.424;set=HC	GT:AD:AF:DP	0/1:195,209:0.52:404
chr17	41465844	.	T	C	8034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=17.096;ClippingRankSum=0.000;DP=417;ExcessHet=3.0103;FS=89.357;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.335;QD=20.04;ReadPosRankSum=-5.653;SOR=4.209;set=HC	GT:AD:AF:DP	0/1:209,192:0.48:401
chr17	41465847	.	A	AGGC	8061.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=15.901;ClippingRankSum=0.000;DP=423;ExcessHet=3.0103;FS=88.401;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.032;QD=19.81;ReadPosRankSum=-6.024;SOR=4.220;set=HC	GT:AD:AF:DP	0/1:216,191:0.47:407
chr17	41465848	.	A	G	7953.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.473;ClippingRankSum=0.000;DP=410;ExcessHet=3.0103;FS=166.002;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-3.303;QD=20.19;ReadPosRankSum=-6.523;SOR=4.126;set=HC	GT:AD:AF:DP	0/1:214,180:0.46:394
chr17	41465852	.	A	G	6825.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=16.399;ClippingRankSum=0.000;DP=403;ExcessHet=3.0103;FS=156.404;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-3.352;QD=17.64;ReadPosRankSum=-7.608;SOR=4.033;set=HC	GT:AD:AF:DP	0/1:213,174:0.45:387
chr17	41465853	.	GATA	G	19657.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.135;ClippingRankSum=0.000;DP=402;ExcessHet=3.0103;FS=143.439;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-3.544;QD=50.93;ReadPosRankSum=-7.127;SOR=3.859;set=HC	GT:AD:AF:DP	0/1:223,163:0.42:386
chr17	41465867	rs12600401	A	G	4116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-10.772;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=35.478;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=3.013;QD=6.03;ReadPosRankSum=12.641;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:449,234:0.34:683
chr17	41465877	rs77516390	A	C	17144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.738;ClippingRankSum=0.000;DB;DP=701;ExcessHet=3.0103;FS=47.332;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.202;QD=25.03;ReadPosRankSum=-8.461;SOR=2.710;set=HC	GT:AD:AF:DP	0/1:254,431:0.63:685
chr17	41465893	rs75477609	C	A	16249.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=11.822;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=53.749;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.908;QD=22.32;ReadPosRankSum=-4.398;SOR=2.826;set=HC	GT:AD:AF:DP	0/1:320,408:0.56:728
chr17	41465894	rs77055481	T	C	16172.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.787;ClippingRankSum=0.000;DB;DP=747;ExcessHet=3.0103;FS=54.065;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-3.970;QD=22.12;ReadPosRankSum=-4.199;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:327,404:0.55:731
chr17	41465915	.	GTC	G	10045.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.720;ClippingRankSum=0.000;DP=672;ExcessHet=3.0103;FS=72.542;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-5.321;QD=15.31;ReadPosRankSum=-5.025;SOR=3.166;set=HC	GT:AD:AF:DP	0/1:397,259:0.39:656
chr17	41465919	.	CAAGATAT	C	8154.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=16.438;ClippingRankSum=0.000;DP=667;ExcessHet=3.0103;FS=103.067;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-4.957;QD=12.53;ReadPosRankSum=-3.167;SOR=4.822;set=HC	GT:AD:AF:DP	0/1:435,216:0.33:651
chr17	41465927	.	CATCA	C	7488.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=17.342;ClippingRankSum=0.000;DP=678;ExcessHet=3.0103;FS=102.028;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-5.083;QD=11.33;ReadPosRankSum=-2.779;SOR=4.906;set=HC	GT:AD:AF:DP	0/1:449,212:0.32:661
chr17	41465937	.	G	GCA	6876.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=21.377;ClippingRankSum=0.000;DP=664;ExcessHet=3.0103;FS=88.126;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-5.261;QD=10.63;ReadPosRankSum=-3.871;SOR=4.626;set=HC	GT:AD:AF:DP	0/1:461,186:0.29:647
chr17	41465939	.	A	G	6351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=20.896;ClippingRankSum=0.000;DP=650;ExcessHet=3.0103;FS=72.462;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-5.589;QD=10.02;ReadPosRankSum=-4.198;SOR=4.393;set=HC	GT:AD:AF:DP	0/1:467,167:0.26:634
chr17	41465941	.	A	G	5544.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=20.720;ClippingRankSum=0.000;DP=650;ExcessHet=3.0103;FS=69.209;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-5.664;QD=8.73;ReadPosRankSum=-5.083;SOR=4.354;set=HC	GT:AD:AF:DP	0/1:471,164:0.26:635
chr17	41465942	.	C	CG	5442.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=18.264;ClippingRankSum=0.000;DP=651;ExcessHet=3.0103;FS=69.238;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-5.717;QD=8.56;ReadPosRankSum=-5.383;SOR=4.327;set=HC	GT:AD:AF:DP	0/1:474,162:0.25:636
chr17	41465944	.	A	G	5328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=20.131;ClippingRankSum=0.000;DP=635;ExcessHet=3.0103;FS=63.596;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-5.415;QD=8.59;ReadPosRankSum=-5.774;SOR=4.115;set=HC	GT:AD:AF:DP	0/1:473,147:0.24:620
chr17	41465950	rs140897052	A	C	4189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.978;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=57.952;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-5.412;QD=7.20;ReadPosRankSum=-8.193;SOR=3.911;set=HC	GT:AD:AF:DP	0/1:456,126:0.22:582
chr17	41465956	rs143530232	A	G	3175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=18.525;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=44.453;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-5.984;QD=5.74;ReadPosRankSum=-9.336;SOR=3.588;set=HC	GT:AD:AF:DP	0/1:451,102:0.18:553
chr17	41465957	rs142030421	T	C	3043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=18.001;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=47.020;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-6.050;QD=5.51;ReadPosRankSum=-9.637;SOR=3.701;set=HC	GT:AD:AF:DP	0/1:452,100:0.18:552
chr17	41465964	rs139221236	G	T	2240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=18.209;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=36.631;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-6.762;QD=4.33;ReadPosRankSum=-11.283;SOR=3.500;set=HC	GT:AD:AF:DP	0/1:440,78:0.15:518
chr17	41466049	rs62080661	A	G	2031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=-4.940;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:202,64:0.24:266
chr17	41466055	rs62080662	G	C	2149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-3.599;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:176,68:0.28:244
chr17	41466096	rs62080664	A	G	4502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=5.176;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.183;QD=22.97;ReadPosRankSum=-0.627;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:81,115:0.59:196
chr17	41466108	rs62080665	G	C	4604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.337;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=7.735;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.124;QD=24.89;ReadPosRankSum=1.385;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:72,113:0.61:185
chr17	41466120	rs66825422	GCGGCGCATGGA	G	4434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.189;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=14.229;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.043;QD=25.78;ReadPosRankSum=2.832;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:61,111:0.65:172
chr17	41477710	rs3179287	A	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	41522213	rs7207008	T	A	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	41561601	rs140026870	CGGAAGGA	C	9884.73	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:2,363:0.99:365
chr17	41566969	rs1807204	T	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	41570248	.	C	G	4295.77	.	AC=2;AF=1.00;AN=2;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	41570427	rs2279191	T	C	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	41573730	rs12602059	T	C	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	41582284	rs55956367	A	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	41585657	rs2293014	G	A	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	41590928	rs9893137	C	T	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	41598940	rs2271957	T	C	8694.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr17	41599383	rs2271958	G	A	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	41603882	rs9915640	T	C	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	41610398	rs2242598	C	T	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	41613691	rs56357945	G	T	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	41622507	rs79868029	A	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	41622562	.	CGT	C	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.361;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:86,32:0.27:118
chr17	41622740	rs2271959	G	T	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr17	41846964	rs1230403	T	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	41955158	rs231521	A	G	11641.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr17	41959808	rs124721	T	C	39619.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;ClippingRankSum=0.000;DB;DP=1529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.24;ReadPosRankSum=-0.980;SOR=0.228;set=HC	GT:AD:AF:DP	1/1:1,1509:1.00:1510
chr17	41960343	rs124719	T	C	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	41960633	rs412849	CG	GC	19369.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr17	41961451	rs231518	T	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	41981843	rs146406851	G	A	6956.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	41987062	rs3744416	A	G	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	41994794	rs231458	C	T	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	42018471	rs231473	T	C	20254.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=26.03;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,778:1.00:778
chr17	42030743	rs229969	G	C	12364.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=25.13;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr17	42170181	rs67111880	TG	T	2349.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.592;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.233;QD=25.54;ReadPosRankSum=0.163;SOR=0.242;set=HC	GT:AD:AF:DP	1/1:1,91:0.99:92
chr17	42225547	rs227584	A	C	17370.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,675:1.00:675
chr17	42232442	rs2246287	C	G	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	42239349	rs730228	T	C	7960.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr17	42248346	rs7218599	A	T	8395.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	42249717	rs10628218	A	ATG	1313.76	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:3,39:0.93:42
chr17	42254011	rs7220138	C	G	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	42254281	rs7212573	A	G	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	42254417	rs7212854	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	42254527	rs7217858	T	G	4699.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	42255097	rs3826412	T	C	13115.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr17	42264962	rs4793082	A	G	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	42266218	rs2240226	C	T	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	42266224	rs8073555	G	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.23;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	42266285	rs370100314	CT	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-1.898;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr17	42268274	rs757430	C	T	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	42268349	rs144005882	TCTC	T	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	42274145	rs72131904	C	CAA	272.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=2.420;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr17	42287519	rs2071167	C	T	8697.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	42294198	rs2269908	G	C	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	42294215	rs2269907	G	A	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	42391046	.	C	CT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.391;QD=5.02;ReadPosRankSum=1.074;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr17	42392042	.	TGG	T,TG	886.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.823;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.354;QD=23.34;ReadPosRankSum=0.426;SOR=0.232;set=HC	GT:AD:AF:DP	1/2:2,22,14:0.58,0.37:38
chr17	42392077	rs68030960	T	C	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	42392622	rs708386	T	C	12497.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.75;ReadPosRankSum=-1.619;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:4,501:0.99:505
chr17	42392768	rs187076307	G	A	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	42398052	rs2011951	A	G	11256.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:1,435:1.00:436
chr17	42398757	rs2011895	C	A	9875.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr17	42400816	rs60776742	C	A	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr17	42426940	rs9897526	G	A	16745.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr17	42427544	rs113219200	G	GAGTC	9184.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=1.333;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	42427732	rs850713	G	A	11513.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr17	42430244	rs5848	C	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	42437000	rs71371993	G	A	9003.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr17	42449789	rs5910	G	A	11254.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr17	42453065	rs5911	A	C	10664.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	42454270	rs850731	T	C	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	42454342	rs71371995	A	G	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	42454463	rs850730	G	C	9836.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.82;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr17	42454566	rs376710190	CT	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.074;QD=0.80;ReadPosRankSum=-1.155;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:159,51:0.24:210
chr17	42455022	rs34603233	TGAGCCCCTG	T	1884.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	42455717	rs12938868	G	A	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	42734746	rs35032511	CT	C	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.974;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:10,43:0.81:53
chr17	42744238	rs9907151	A	C	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	42751607	rs6416902	C	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	42808491	rs16970956	G	A	11311.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	42824648	rs9893320	T	C	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	42846994	rs8070918	T	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	42847438	rs55882072	C	G	10877.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr17	42850352	rs68017435	T	C	13130.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr17	42852061	rs12942192	C	T	8467.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	42852610	rs1558084	T	C	15193.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,592:1.00:592
chr17	42925559	rs12164	C	T	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	42927628	rs2231647	A	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	42927721	rs1071682	G	A	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	42929970	rs2289673	T	C	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	42929985	rs73984100	G	T	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	42932193	rs8067689	C	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	42934372	rs6503405	A	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	42934694	rs2277615	T	C	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	42937749	rs9903106	C	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	42945296	rs2120276	A	G	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr17	42945541	rs72382060	T	TA	130.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=1.886;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr17	42945867	rs3785890	A	G	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	42949808	rs11654183	G	A	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	42957127	rs2289675	G	A	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	42957139	rs2289676	C	T	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	42957855	rs1443463	A	G	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	42960624	rs1561970	G	A	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	42961009	rs2289677	C	T	8160.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	42978554	rs7222312	T	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	42979026	rs74349463	T	C	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	42979670	rs8079610	C	A	9101.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr17	42980189	rs8079308	G	A	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	42981239	rs35098586	G	GAGT	4057.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	42981654	rs3826425	A	G	13432.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.73;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,522:1.00:522
chr17	42982288	rs3744473	A	G	9886.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:2,386:0.99:388
chr17	42984687	rs11558961	G	C	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	42984842	rs11651396	G	A	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	42987523	rs9908084	GT	AC	18859.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr17	42988092	rs2289679	G	C	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	42988959	rs2289671	T	C	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr17	43003484	rs3169733	T	C	15671.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr17	43008905	rs7218001	C	A	2434.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.748;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.36;ReadPosRankSum=1.765;SOR=0.357;set=HC	GT:AD:AF:DP	1/1:1,95:0.99:96
chr17	43011908	rs755547	G	A	15324.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr17	43101682	.	TGTGTGTGTGTGTGTGTGTGTGTGTGG	T	196.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=64.14;MQRankSum=0.347;QD=5.32;ReadPosRankSum=-0.264;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr17	43101684	.	TGTGTGTGTGTGTGTGTGTGTGTGG	T	641.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=64.34;MQRankSum=-0.309;QD=17.34;ReadPosRankSum=0.882;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr17	43111154	rs10451271	A	G	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.90;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	43111162	rs9303432	A	G	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.20;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	43131480	rs4793172	A	T	12674.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,500:1.00:500
chr17	43131618	rs145150422	A	AT	1398.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.465;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.65;ReadPosRankSum=-1.209;SOR=0.427;set=HC	GT:AD:AF:DP	1/1:10,65:0.87:75
chr17	43131622	rs11434441	A	AT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=1.634;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr17	43138597	rs62065834	C	T	9497.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr17	43158902	rs916661	G	A	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	43163756	rs6416904	A	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	43163851	rs6503422	T	C	8302.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	43170907	rs2239921	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	43176632	rs877598	A	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	43181287	rs4793167	A	G	8975.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr17	43191006	rs2285427	T	C	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	43192549	rs35911033	T	TC	17185.73	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr17	43196546	rs4362432	G	A	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	43198166	rs11382448	A	AG	5070.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	43213772	rs2306828	A	C	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	43219912	rs72628318	A	G	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	43227766	rs78243847	T	TTTGG	1892.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	43310210	rs112855430	ATG	A	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.369;QD=0.66;ReadPosRankSum=0.737;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:162,20:0.11:182
chr17	43316520	rs1023995	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	43318778	rs7218169	GC	CG	8174.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	43319770	rs1801353	C	T	10203.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	43333125	rs11651968	C	T	10562.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	43333785	rs76453679	AAGAC	A	5803.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	43334649	rs60163605	C	A	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.18;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	43334653	rs58314091	T	C	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	43342141	rs1047833	G	C	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	43342306	rs2285674	C	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	43344073	rs2074293	G	A	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	43351127	rs2072090	G	C	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	43364293	rs56405343	C	CG	19207.73	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr17	43910455	rs17689966	G	A	7059.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.65;QD=25.39;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	43923180	rs242944	G	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.03;QD=26.33;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	43923898	rs171443	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.75;QD=27.59;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	43924412	rs242943	T	C	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.67;QD=29.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	44363740	.	C	A	68.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=22.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	44408406	.	A	G	513.77	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.92;QD=25.69;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	44788253	rs78850923	G	A	92.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	44833088	rs71138549	AT	A	212	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.064;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=12.330;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.717;QD=6.42;ReadPosRankSum=1.839;SOR=4.849;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr17	44833217	rs35732828	C	A	9803.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.14;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr17	44950122	rs4968281	T	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=25.07;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	45000529	rs189899	G	C	5675.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	45000547	rs183199	G	C	6499.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	45008570	rs197922	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	45008742	rs197923	G	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	45012248	rs169126	T	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	45017859	rs758392	A	G	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	45050533	rs11079746	T	C	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	45198400	rs938904	G	A	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	45214604	rs75661039	A	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-11.654;QD=1.55;ReadPosRankSum=-1.884;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:131,20:0.13:151
chr17	45214605	rs76926116	T	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-11.479;QD=1.58;ReadPosRankSum=-1.318;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:130,18:0.12:148
chr17	45234406	rs112848754	CA	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-4.484;QD=1.06;ReadPosRankSum=-0.353;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:65,8:0.11:73
chr17	45234417	rs193061947	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-5.242;QD=1.00;ReadPosRankSum=0.484;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:62,4:0.06:66
chr17	45234420	rs78493795	T	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-7.210;QD=0.66;ReadPosRankSum=-1.181;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:59,6:0.09:65
chr17	45234760	rs11372544	C	CA	1246.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=-0.733;SOR=0.581;set=HC	GT:AD:AF:DP	1/1:11,72:0.87:83
chr17	45367676	.	G	T	1221.77	.	AC=2;AF=1.00;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	45481842	rs10599296	TAA	T	3380.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	45600306	rs201678252	AT	A	6401.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.46;QD=34.98;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	45623439	.	T	TGTGAGAGA	902.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.610;QD=7.28;ReadPosRankSum=1.826;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:66,58:0.47:124
chr17	45663680	rs372546318	GTA	G	515.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:147,37:0.20:184
chr17	45664573	rs368843753	CT	C	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-4.214;QD=1.76;ReadPosRankSum=-1.611;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:140,63:0.31:203
chr17	45669359	rs200616431	T	G	3748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=912;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-0.049;QD=4.12;ReadPosRankSum=0.931;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:651,260:0.29:911
chr17	45669428	rs59875832	T	TA	3754.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.35;MQRankSum=-1.276;QD=20.52;ReadPosRankSum=2.780;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:6,177:0.97:183
chr17	45669524	rs3865314	A	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	45677192	rs34538095	CT	C	1221.14	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:15,81:0.84:96
chr17	45690029	rs35841962	CT	C	316.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.759;QD=7.36;ReadPosRankSum=0.272;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,33:0.77:43
chr17	45695832	rs3760370	C	T	24716.77	.	AC=2;AF=1.00;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	1/1:0,965:1.00:965
chr17	45695914	rs3760371	T	C	17815.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,675:1.00:675
chr17	45700384	rs3065062	C	CCTA	4014.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	45734209	rs68149542	CTTT	C	11815.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	45750596	rs3809868	G	A	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	45754569	rs11301979	AC	A	3832.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:3,150:0.98:153
chr17	45757598	rs7210738	G	A	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	45777190	rs373996808	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-1.438;QD=1.02;ReadPosRankSum=-0.837;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr17	45811354	rs41444548	C	G	23589.77	.	AC=2;AF=1.00;AN=2;DB;DP=958;set=Intersection	GT:AD:AF:DP	1/1:0,924:1.00:924
chr17	45885687	rs9907142	A	G	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	45885756	rs9911983	C	T	15738.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr17	45888251	rs2074188	C	G	12518.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr17	45894735	rs9914156	A	G	11171.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr17	45895571	rs916798	T	A	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	45896478	rs878171	T	C	10577.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,421:1.00:421
chr17	45897531	rs1985407	C	A	46178.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.948;ClippingRankSum=0.000;DB;DP=1805;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.27;ReadPosRankSum=0.957;SOR=0.332;set=HC	GT:AD:AF:DP	1/1:1,1757:1.00:1758
chr17	45905850	rs4793671	C	T	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	45913847	rs16948662	C	A	14591.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:1,578:1.00:579
chr17	45915395	rs6503875	T	C	14580.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr17	45915788	rs7350974	T	C	21457.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=859;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=-1.906;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:2,830:1.00:832
chr17	45959620	rs17616603	T	C	11955.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr17	45992580	rs60876460	C	CA	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-0.513;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:192,54:0.22:246
chr17	45992622	rs11871969	G	A	13008.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.559;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.17;ReadPosRankSum=0.356;SOR=0.327;set=HC	GT:AD:AF:DP	1/1:1,496:1.00:497
chr17	46000406	rs62067380	T	C	51082.77	.	AC=2;AF=1.00;AN=2;DB;DP=1995;set=Intersection	GT:AD:AF:DP	1/1:0,1971:1.00:1971
chr17	46030644	rs3833856	T	TG	7826.73	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:5,300:0.98:305
chr17	46055036	rs7503584	G	A	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	46114620	rs12940701	C	T	11329.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,438:1.00:438
chr17	46115072	rs199699704	C	CG	4593.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.46;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	46115084	rs201261614	T	TGG	3345.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	46115122	.	A	AG	522.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	46132212	rs373501023	T	TG	3068.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	46152559	rs35354810	C	CT	834.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=0.569;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:253,91:0.26:344
chr17	46190819	rs8080662	G	A	9034.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr17	46190928	rs12601675	TG	CA	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	46195926	rs8071267	C	T	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=24.64;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	46195939	rs11450766	C	CA	1386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.791;QD=8.11;ReadPosRankSum=0.690;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:64,107:0.63:171
chr17	46198876	rs3744346	G	C	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	46239985	rs208005	A	G	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr17	46248074	.	C	CT	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=6.022;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.594;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:98,32:0.25:130
chr17	46262171	rs2278868	C	T	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	46265433	rs2305433	G	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	46607021	rs7226137	T	C	21796.77	.	AC=2;AF=1.00;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	1/1:0,829:1.00:829
chr17	46607817	rs7207109	C	T	18950.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr17	46607958	rs12939811	T	A	19249.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr17	46608030	rs12946855	G	A	19831.77	.	AC=2;AF=1.00;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	1/1:0,745:1.00:745
chr17	46608184	rs145570960	G	GGGGCGCTGT	22753.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=1163;ExcessHet=3.0103;FS=3.329;MLEAC=2;MLEAF=1.000;MQ=62.30;MQRankSum=1.982;QD=24.89;ReadPosRankSum=0.756;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:10,904:0.99:914
chr17	46620402	rs2229302	G	A	17334.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:3,675:1.00:678
chr17	46621828	rs56128659	T	A	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	46622335	rs111979968	A	AC	2999.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	46622348	rs138169880	A	AC	1045.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr17	46629933	.	ACC	A,AC	979.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=67;set=Intersection	GT:AF:DP	1/2:0.21,0.70:47
chr17	46651061	rs2288277	T	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	46670520	rs7406798	T	C	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	46688256	rs7406910	T	C	24248.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=946;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.27;ReadPosRankSum=1.681;SOR=0.272;set=HC	GT:AD:AF:DP	1/1:1,922:1.00:923
chr17	46691587	rs112987208	A	AGGCCCCCTGCCC	1817.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	46799812	rs1054072	A	G	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	46862675	rs507973	TC	AT	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	46867199	rs1627452	G	T	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr17	46874272	rs585736	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	46874362	.	A	AT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.310;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:165,39:0.19:204
chr17	46881748	rs489005	T	C	17223.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,681:1.00:681
chr17	46923384	rs533842	G	A	14447.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr17	46926615	rs550510	G	A	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	46926772	rs551605	A	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	46934007	rs2546495	A	C	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chr17	46970836	rs684682	A	G	6595.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	46972479	rs3080082	ATCTC	A	58535.73	.	AC=2;AF=1.00;AN=2;DB;DP=1330;set=Intersection	GT:AD:AF:DP	1/1:0,1309:1.00:1309
chr17	46973139	rs35074390	TG	T	7699.73	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	46985756	rs71144541	AG	A	2759.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	46993370	rs4378658	G	A	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	47000110	rs2088139	C	T	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=22.85;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	47000128	.	G	GA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.691;QD=1.03;ReadPosRankSum=-1.744;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chr17	47000251	rs1058018	C	T	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	47010795	rs72523750	CAG	C	6891.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	47011897	rs57901004	C	T	2752.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.526;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.94;ReadPosRankSum=0.981;SOR=0.237;set=HC	GT:AD:AF:DP	1/1:1,114:0.99:115
chr17	47013382	rs140139274	G	GTTTGT	7573.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	47013717	rs3215074	AT	A	1377.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	47014675	rs2132201	C	T	30649.77	.	AC=2;AF=1.00;AN=2;DB;DP=1211;set=Intersection	GT:AD:AF:DP	1/1:1,1186:1.00:1187
chr17	47014754	rs2132200	T	C	7782.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	47035869	rs4793605	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	47038391	rs6504587	T	C	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	47039132	rs2291725	T	C	20809.77	.	AC=2;AF=1.00;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	1/1:1,818:1.00:819
chr17	47044463	rs62078384	C	T	29845.77	.	AC=2;AF=1.00;AN=2;DB;DP=1153;set=Intersection	GT:AD:AF:DP	1/1:0,1147:1.00:1147
chr17	47076551	rs2411760	G	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.32;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	47109368	rs34685424	TG	T	22467.73	.	AC=2;AF=1.00;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	1/1:11,782:0.99:793
chr17	47109427	rs8079385	C	G	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,250:1.00:251
chr17	47118995	rs62078404	G	C	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	47119832	rs2289637	C	T	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	47120776	rs2289636	T	C	6104.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	47121551	rs62078405	G	C	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	47123887	rs58631313	C	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	47230360	rs62079773	T	G	17738.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr17	47237802	rs1523137	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	47238028	rs8071836	C	T	13714.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr17	47241604	rs8074457	T	C	20653.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:0,799:1.00:799
chr17	47243622	rs16970025	G	T	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	47280301	rs4794029	T	C	19138.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,755:1.00:755
chr17	47293848	rs2233368	C	T	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	47297297	rs616338	T	C	21312.77	.	AC=2;AF=1.00;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	1/1:1,812:1.00:813
chr17	47329705	rs596783	T	C	35609.77	.	AC=2;AF=1.00;AN=2;DB;DP=1382;set=Intersection	GT:AD:AF:DP	1/1:0,1363:1.00:1363
chr17	47486905	rs3033735	G	GTT	360.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=1.767;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:2,18:0.90:20
chr17	47779288	rs34701118	C	CA	550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.182;QD=1.38;ReadPosRankSum=2.104;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:301,99:0.25:400
chr17	47780710	rs201296363	GCACA	G,GCA	3301.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.548;QD=25.40;ReadPosRankSum=-0.087;SOR=0.632;set=HC	GT:AD:AF:DP	1/2:8,23,99:0.18,0.76:130
chr17	47785064	rs9908959	C	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	47801651	rs11079874	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	47888852	rs4462645	A	G	13457.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,530:1.00:530
chr17	47899280	rs373603649	TA	T	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.708;QD=3.93;ReadPosRankSum=-1.653;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr17	47923640	rs11297059	AT	A	1239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.207;QD=8.67;ReadPosRankSum=0.653;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:33,110:0.77:143
chr17	48051321	rs192533761	C	T	11637.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr17	48068720	rs8081044	T	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	48145641	.	C	T	45266.77	.	AC=2;AF=1.00;AN=2;DP=1773;set=Intersection	GT:AD:AF:DP	1/1:0,1724:1.00:1724
chr17	48148413	rs2301628	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	48151908	rs4793639	T	C	34670.77	.	AC=2;AF=1.00;AN=2;DB;DP=1379;set=Intersection	GT:AD:AF:DP	1/1:4,1343:1.00:1347
chr17	48155771	rs16948648	C	T	11966.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr17	48157827	.	GGTGTGTGT	G,GGT	3369.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=210;set=Intersection	GT:AF:DP	1/2:0.47,0.50:94
chr17	48165064	rs12951197	T	C	8869.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	48172779	rs7221362	A	C	16020.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:2,605:1.00:607
chr17	48184288	rs847694	G	A	26933.77	.	AC=2;AF=1.00;AN=2;DB;DP=1042;set=Intersection	GT:AD:AF:DP	1/1:0,996:1.00:996
chr17	48184377	rs847693	A	G	31255.77	.	AC=2;AF=1.00;AN=2;DB;DP=1198;set=Intersection	GT:AD:AF:DP	1/1:0,1160:1.00:1160
chr17	48186131	rs3059824	T	TCTC	9327.73	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:2,343:0.99:345
chr17	48202135	.	G	GCGCGCACACACACACA	1184.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;QD=56.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	48212647	rs11317638	GA	G	4711.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	48212876	rs3744536	C	T	6085.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr17	48226445	rs112058541	G	GC	10100.73	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	48227384	.	G	GGC	36640.73	.	AC=2;AF=1.00;AN=2;DP=875;set=Intersection	GT:AD:AF:DP	1/1:0,822:1.00:822
chr17	48227403	.	G	GGC	27947.73	.	AC=2;AF=1.00;AN=2;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr17	48243504	rs9911548	C	T	14108.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr17	48245180	rs2696297	C	T	16786.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr17	48249450	rs2696293	C	G	33535.77	.	AC=2;AF=1.00;AN=2;DB;DP=1303;set=Intersection	GT:AD:AF:DP	1/1:0,1274:1.00:1274
chr17	48252804	rs2696288	T	C	36884.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.800;ClippingRankSum=0.000;DB;DP=1414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.46;ReadPosRankSum=0.656;SOR=0.258;set=HC	GT:AD:AF:DP	1/1:1,1393:1.00:1394
chr17	48253150	.	A	G	43401.77	.	AC=2;AF=1.00;AN=2;DP=1725;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,1710:1.00:1710
chr17	48258140	rs2586484	T	C	27406.77	.	AC=2;AF=1.00;AN=2;DB;DP=1077;set=Intersection	GT:AD:AF:DP	1/1:0,1063:1.00:1063
chr17	48258284	.	G	GA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.211;ClippingRankSum=0.000;DP=682;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=5.960;QD=0.18;ReadPosRankSum=-0.213;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:471,89:0.16:560
chr17	48258321	rs2586485	C	T	10084.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,383:1.00:384
chr17	48263021	rs2249492	C	T	13968.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr17	48264717	rs2696245	C	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	48265426	rs2586488	A	G	39059.77	.	AC=2;AF=1.00;AN=2;DB;DP=1504;set=Intersection	GT:AD:AF:DP	1/1:0,1488:1.00:1488
chr17	48265495	rs1800215	T	C	15489.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr17	48266160	rs138425306	CAG	C	770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=1435;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.965;QD=0.62;ReadPosRankSum=1.007;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:1103,133:0.11:1236
chr17	48266669	rs2586489	G	C	42251.77	.	AC=2;AF=1.00;AN=2;DB;DP=1630;set=Intersection	GT:AD:AF:DP	1/1:0,1554:1.00:1554
chr17	48267291	rs2075559	G	C	31005.77	.	AC=2;AF=1.00;AN=2;DB;DP=1199;set=Intersection	GT:AD:AF:DP	1/1:0,1187:1.00:1187
chr17	48268223	rs2734272	A	G	32231.77	.	AC=2;AF=1.00;AN=2;DB;DP=1266;set=Intersection	GT:AD:AF:DP	1/1:2,1253:1.00:1255
chr17	48268626	rs2696246	A	G	16968.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr17	48269302	rs2857396	G	A	50584.77	.	AC=2;AF=1.00;AN=2;DB;DP=1953;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,1932:1.00:1932
chr17	48269426	rs2586490	C	T	15200.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr17	48271433	rs1007086	A	G	23636.77	.	AC=2;AF=1.00;AN=2;DB;DP=950;set=Intersection	GT:AD:AF:DP	1/1:2,912:1.00:914
chr17	48272055	rs2253369	C	T	40714.77	.	AC=2;AF=1.00;AN=2;DB;DP=1575;set=Intersection	GT:AD:AF:DP	1/1:0,1555:1.00:1555
chr17	48273439	rs2734281	T	C	17774.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:2,560:1.00:562
chr17	48273464	rs2141279	T	C	26915.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,657:1.00:657
chr17	48274291	rs2075555	T	G	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	48274309	rs2075554	T	C	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	48276004	rs5820805	G	GC	4093.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	48276555	rs73987449	G	A	6175.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr17	48277059	.	AGCCCCAG	A	17015.73	.	AC=2;AF=1.00;AN=2;DP=1188;set=Intersection	GT:AD:AF:DP	1/1:11,713:0.98:724
chr17	48354937	rs12602216	G	C	6250.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	48356260	rs6504642	G	C	50709.77	.	AC=2;AF=1.00;AN=2;DB;DP=1966;set=Intersection	GT:AD:AF:DP	1/1:0,1948:1.00:1948
chr17	48432042	rs11430429	G	GA	8971.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	48432681	rs2526538	G	A	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	48437456	rs6504649	C	G	44681.77	.	AC=2;AF=1.00;AN=2;DB;DP=1692;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,1646:1.00:1646
chr17	48440467	.	T	TA	1113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DP=1389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.866;QD=0.83;ReadPosRankSum=2.845;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:1081,257:0.19:1338
chr17	48440522	rs10656180	T	TCCA	37190.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.049;ClippingRankSum=0.000;DB;DP=1579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.083;QD=25.40;ReadPosRankSum=-0.224;SOR=0.332;set=HC	GT:AD:AF:DP	1/1:4,1460:1.00:1464
chr17	48445699	rs2586438	C	T	12314.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:4,474:0.99:478
chr17	48452776	rs3760413	A	C	22185.77	.	AC=2;AF=1.00;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	1/1:0,847:1.00:847
chr17	48457567	rs917029	G	A	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	48460745	rs3744525	C	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	48460750	rs3744524	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.37;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	48469724	rs757509	T	C	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	48472270	rs3760407	C	T	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	48503473	rs371898261	GCGCCC	G	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	48504132	rs9901133	A	G	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	48539763	rs2277631	C	A	18061.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,687:1.00:687
chr17	48539997	rs8082089	T	C	6582.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	48540960	rs3744522	C	G	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	48541443	rs2277630	G	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	48541491	rs2277629	A	G	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	48541707	rs898455	G	A	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	48542572	rs898454	C	G	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	48543391	rs2231506	A	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	48545596	rs34864120	G	A	9038.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr17	48549791	rs2305998	C	G	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	48557326	rs2290862	G	A	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	48557348	rs2290861	T	C	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr17	48560550	.	A	AAAAG	155.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.18;QD=38.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	48598785	rs1380657	G	A	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	48599195	rs9893172	T	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	48599450	rs7216625	A	T	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	48602098	rs373928628	T	TGTGAGAGA	1259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.09;MQRankSum=0.696;QD=34.99;ReadPosRankSum=1.760;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:5,31:0.86:36
chr17	48603503	rs9890721	C	T	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	48603775	rs149225883	C	CTATTTATT	443.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	48605780	rs8067733	C	G	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	48606313	rs2290864	G	A	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	48606537	rs1133818	C	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	48606606	rs4793659	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	48607280	rs6504671	G	C	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	48607614	rs4794156	G	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	48608717	rs1064055	T	C	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	48608951	rs2277627	C	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	48610272	rs755046	G	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	48610279	.	C	A	2744.77	.	AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	48613837	rs3785915	A	G	12751.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr17	48617493	rs62059698	A	G	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	48625543	rs12943759	G	A	6985.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	48629458	rs8065903	A	G	11529.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr17	48646346	.	AGTGT	AGT,A	411.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=142;set=Intersection	GT:AF:DP	0/1:0.38:73
chr17	48678325	rs198530	A	T	7064.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	48698949	.	G	A	2687.77	.	AC=2;AF=1.00;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	48746135	rs879459	C	T	10522.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr17	48746923	rs4794176	G	C	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	48753522	rs8077268	C	T	7682.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	48777820	rs202228092	AAG	A	31.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=0.148;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr17	48777821	rs200307796	AG	A	215.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.607;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:28,24:0.46:52
chr17	48797210	rs11398903	T	TG	10028.73	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	48801239	rs117687704	G	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	48821201	rs9894501	T	C	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.66;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	48821207	rs9894508	T	C	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.05;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	48823815	rs2302288	C	T	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	48834053	.	CAAAAAAAAA	C	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.467;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.820;QD=28.94;ReadPosRankSum=1.419;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr17	48834080	rs9303561	A	G	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=37.11;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	48913478	rs77632597	C	T	21673.77	.	AC=2;AF=1.00;AN=2;DB;DP=854;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,841:1.00:841
chr17	48913571	rs4420571	C	T	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	49041948	.	C	CA	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=-1.944;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr17	49042121	rs192510573	T	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	49053072	.	TA	T	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.294;QD=2.44;ReadPosRankSum=2.050;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr17	49076857	rs377700707	TA	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.445;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr17	49084471	.	GGT	G	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.551;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr17	49124845	rs11400140	G	GA	501.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.89;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	49197654	rs5820842	A	AC	1651.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.39;SOR=2.970;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	49231623	rs34431255	C	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	49231627	rs11556835	G	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	49233224	rs58429717	T	C	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	49237562	rs2041296	C	T	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	49239036	rs2159359	C	A	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	49245742	rs3744659	A	G	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	49247503	.	CTT	C	748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=2.689;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,38:0.75:51
chr17	49257946	rs3803887	T	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	49270643	rs35987233	AT	A	30.71	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	49365279	rs115314782	G	T	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	49365645	rs78960043	C	T	102.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	49371505	rs917654	C	G	86.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	49710713	rs3815371	G	A	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	49713205	rs10514986	G	T	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	49713300	rs11870209	G	A	7705.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	50149899	rs5820905	C	CT	480.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.996;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.542;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.00;ReadPosRankSum=-1.496;SOR=0.307;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr17	50212169	rs7218252	G	C	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	50212182	rs1503057	T	C	7993.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	51900729	rs3803824	C	T	21278.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	1/1:0,806:1.00:806
chr17	51901084	rs3803825	A	G	7882.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	51901643	rs4561518	C	T	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	51901703	rs4561519	C	G	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	51902252	rs3826355	C	T	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	51902492	rs10693171	A	AAAT	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	52993346	rs2934935	G	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	53014442	rs5821078	C	CT	2001.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=1.065;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:61,137:0.69:198
chr17	53076799	rs1156287	G	A	4613.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	53076986	rs11658717	G	A	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	53084697	rs141409093	CT	C	263.92	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr17	53084790	rs12051573	C	T	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	53121020	rs17818142	A	G	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:2,270:0.99:272
chr17	53124546	rs149633875	CGTGTGTGT	CGT,C	1137.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=47;set=Intersection	GT:AF:DP	1/1:1.00:29
chr17	53158361	rs2628302	G	A	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	53158492	rs8069999	G	A	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	53342796	rs10635027	G	GTTTC	11366.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=45.11;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	53392852	rs2287223	G	A	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	53485186	rs2286806	C	T	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	53491455	rs11659004	C	A	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,107:0.99:108
chr17	53828493	rs12941739	A	C	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	53828706	rs890488	C	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	53844833	rs57156382	CT	C	2356.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;MQ=60.22;set=Intersection	GT:AD:AF:DP	1/1:5,122:0.96:127
chr17	53844903	rs35052837	G	A	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	53851071	rs2960063	A	G	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	53851078	rs2912558	T	C	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	53851228	rs2960062	C	T	7708.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	54450038	rs957724	C	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	54450134	rs8069322	G	A	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	54517855	rs7224536	T	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	54526301	rs2024316	C	T	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	54534634	rs10852985	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	54554821	rs373804237	CT	C	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.254;QD=3.98;ReadPosRankSum=2.327;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:32,33:0.51:65
chr17	54558282	rs68128704	GTA	G	598.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr17	54558284	.	A	G	111	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=2;HapScore=4;MGOF=8;MMLQ=26;MQ=58.26;NF=1;NR=4;PP=111;QD=29.1542425094;SC=GTGTGTGTGTAAATTTTCCTT;SbPval=0.57;Source=Platypus;TC=19;TCF=3;TCR=16;TR=5;WE=54558292;WS=54558272;set=Platypus	GT:AD:AF:DP	0/1:14,5:0.26:19
chr17	54925480	.	C	CAT	96	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=27;MQ=60.0;NF=0;NR=5;PP=96;QD=21.0;SC=ATATACTATACATATATATAT;SbPval=1.0;Source=Platypus;TC=22;TCF=1;TCR=21;TR=5;WE=54925488;WS=54925470;set=Platypus	GT:AD:AF:DP	1/0:17,5:0.23:22
chr17	54978794	rs205498	G	A	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	54981571	.	CA	C	582.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=4.555;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.460;QD=2.34;ReadPosRankSum=-2.868;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:159,90:0.36:249
chr17	55026912	rs12942251	A	G	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	55027850	rs8071691	T	C	8777.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	55038062	rs9899845	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	55055741	rs71139945	CT	C	443.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.30;QD=15.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	55058689	rs3095499	G	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	55065530	rs12453004	A	G	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	55065558	rs11437466	T	TA	2125.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.81;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	55074482	.	T	TA	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.676;QD=2.56;ReadPosRankSum=-0.163;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr17	55075670	rs367630962	CA	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.971;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.172;QD=0.92;ReadPosRankSum=1.054;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:171,60:0.26:231
chr17	55187278	rs11079277	G	A	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	55189723	rs3094444	T	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	55197802	rs4583	C	A	3366.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.309;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.669;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.94;ReadPosRankSum=-0.918;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:1,134:0.99:135
chr17	55363421	rs11079286	G	C	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	55606875	rs55990806	G	GT	1527.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.391;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.688;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.315;QD=20.37;ReadPosRankSum=-0.843;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:2,73:0.97:75
chr17	55704465	rs1861474	A	G	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	55917353	rs2099914	C	G	6339.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:1,245:1.00:246
chr17	56083934	rs2233911	G	A	5581.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	56232435	rs8071404	G	A	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	56232459	rs145787234	TTTTG	T	5908.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	56232675	rs12602205	G	A	11365.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr17	56233234	rs62636635	C	T	10445.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	56235322	rs1987665	G	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	56247101	rs60994383	C	A	9413.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	56270121	rs12602891	T	C	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	56272390	rs2240815	A	G	21388.77	.	AC=2;AF=1.00;AN=2;DB;DP=848;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,837:1.00:837
chr17	56276940	rs35750729	A	C	14927.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr17	56277187	rs34630974	T	G	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	56283449	rs11548967	C	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	56289545	rs3213698	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	56290334	rs3826300	T	C	5008.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,200:1.00:201
chr17	56290556	rs3744105	A	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	56294141	rs73329636	C	T	5602.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr17	56296368	rs73329640	G	T	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	56321448	.	TGA	T	487	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=18;MQ=63.67;NF=2;NR=22;PP=487;QD=21.75;SC=ACCAGGTACGTGAGACACACA;SbPval=0.58;Source=Platypus;TC=37;TCF=3;TCR=34;TR=24;WE=56321457;WS=56321438;set=Platypus	GT:AD:AF:DP	1/0:13,24:0.65:37
chr17	56321451	rs8178297	G	C	1972.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.749;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.295;MLEAC=2;MLEAF=1.000;MQ=66.96;MQRankSum=2.151;QD=22.42;ReadPosRankSum=1.558;SOR=1.812;set=HC	GT:AD:AF:DP	1/1:1,87:0.99:88
chr17	56344656	rs8178407	A	G	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	56348106	rs2759	T	C	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	56351708	rs67661903	AGTGTGTGT	A	116.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	56357833	rs2856857	G	A	13438.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:1,515:1.00:516
chr17	56381592	rs35853224	T	TA	1020.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	56382512	rs11867412	C	T	17171.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr17	56383187	rs3744102	C	T	9684.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	56383744	rs11079346	T	C	8911.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=-1.031;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:2,350:0.99:352
chr17	56384374	rs11652816	A	G	10950.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr17	56384928	rs36057095	C	T	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	56386118	rs2680689	A	G	9900.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr17	56386358	rs2526360	T	A	10004.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	56388238	rs2680704	C	G	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	56388927	rs2072144	T	C	12464.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr17	56393251	.	G	GGGAT	1541.14	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr17	56398006	rs2526380	C	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	56404349	rs2526378	A	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	56429673	rs2680703	A	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	56438301	rs2680701	G	A	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	56492800	rs3744093	T	C	16345.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:1,642:1.00:643
chr17	56544280	rs1017089	T	G	10537.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr17	56569842	rs75741842	T	TGA	17495.73	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	56580997	rs1860262	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	56581651	rs4277402	C	G	7898.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr17	56584205	rs2302189	A	C	7237.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	56585872	rs3744108	G	C	8875.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr17	56598213	rs10719315	GA	G	1848.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	56598439	rs1057068	T	C	10691.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr17	56598788	rs138161166	G	A	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	56603934	rs376508586	AAC	A	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=1.728;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr17	56603978	rs2079703	G	A	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	56609525	rs11869828	G	A	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	56621286	rs8071623	G	T	9349.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	56621359	rs6503867	T	C	9991.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr17	56636854	rs7225128	T	C	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	56654690	rs1267542	T	C	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	56663450	rs56343451	A	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	57049716	.	C	CT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.379;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr17	57076893	rs4598970	T	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	57089588	rs72443487	G	GCAGCAGCAGCAGCAGCAC	10264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DB;DP=800;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=64.11;MQRankSum=2.536;QD=16.88;ReadPosRankSum=4.941;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:112,496:0.82:608
chr17	57094617	rs4932691	T	C	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	57141768	.	T	TA	28	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=11;HapScore=2;MGOF=27;MMLQ=27;MQ=60.72;NF=0;NR=2;PP=28;QD=18.5;SC=ACTAATTCACTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=2;WE=57141776;WS=57141758;set=Platypus	GT:AD:AF:DP	1/0:9,2:0.18:11
chr17	57663596	rs58298344	TA	T	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-3.170;QD=3.49;ReadPosRankSum=-1.418;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:98,76:0.44:174
chr17	57717737	rs9910530	C	G	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	57719360	rs10547125	GT	G	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=0.582;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:104,37:0.26:141
chr17	57719366	rs9899439	T	G	567.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=50.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=1.907;SOR=1.293;set=HC	GT:AD:AF:DP	0/1:69,81:0.54:150
chr17	57719367	.	T	G	75.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.355;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.656;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:114,38:0.25:152
chr17	57721907	rs113812535	T	TTTTG	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;QD=42.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	57725043	rs8071749	T	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr17	57733479	rs4349212	T	A	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	57743691	rs9893154	G	A	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	57750982	rs8065248	T	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	57886125	rs2645487	T	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	57937792	.	G	GA	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.101;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:125,48:0.28:173
chr17	57940977	rs377342839	CA	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.910;QD=0.50;ReadPosRankSum=1.616;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr17	57951973	rs2250526	G	A	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	57963537	rs1292053	A	G	4979.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	57992145	rs3066247	TATC	T	946.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	58011498	rs180524	G	T	6555.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	58012768	rs11459613	C	CA	1103.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	58024224	rs76853887	C	CAA	6595.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;MQ=60.34;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	58024275	rs180515	A	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	58030551	rs34068842	CT	C	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=6.99;ReadPosRankSum=0.554;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr17	58031412	rs11368	A	G	126.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	58037374	rs12600680	T	C	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	58042126	rs76419616	T	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	58066607	rs200816848	AT	A	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-1.360;QD=1.06;ReadPosRankSum=2.106;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:181,67:0.27:248
chr17	58227525	rs58771049	G	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	58303313	rs11309727	CA	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-1.084;QD=6.02;ReadPosRankSum=-0.952;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:12,27:0.69:39
chr17	58332409	rs11324851	CT	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.036;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr17	58332659	rs72289729	C	CT	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.106;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:81,35:0.30:116
chr17	58786625	rs2643103	A	G	10608.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=-1.023;SOR=0.308;set=HC	GT:AD:AF:DP	1/1:1,412:1.00:413
chr17	58824567	rs7501675	T	C	7649.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr17	58885299	rs9904053	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	58946192	rs8066880	C	G	148.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	58969056	rs9303430	T	C	5912.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	58969174	rs9303431	C	G	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	59001879	.	CT	C	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=2.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.853;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:55,39:0.41:94
chr17	59480289	rs200207014	GAT	G	4275.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	59480291	.	T	G	713	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=2;HapScore=1;MGOF=205;MMLQ=24;MQ=60.0;NF=42;NR=10;PP=713;QD=14.3802156259;SC=GAAGAACCGATAGAGAGAGAG;SbPval=0.73;Source=Platypus;TC=57;TCF=44;TCR=13;TR=52;WE=59480299;WS=59480281;set=Platypus	GT:AD:AF:DP	1/0:5,52:0.91:57
chr17	59480311	rs202026270	GAGAGAGAGAGAGAGAGAGAGA	G	152.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.998;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.858;SOR=1.390;set=HC	GT:AD:AF:DP	0/1:74,13:0.15:87
chr17	59480313	rs140392356	GAGAGAGAGAGAGAGAGAGA	G	1625.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=21.11;ReadPosRankSum=-0.647;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:21,56:0.73:77
chr17	59482165	rs66504335	GC	G	4149.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,144:0.99:146
chr17	59482169	rs35619711	C	G	4277.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.10;ReadPosRankSum=0.678;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:2,145:0.99:147
chr17	59482173	rs9891115	G	A	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	59485393	rs2240736	C	T	14629.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.520;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.08;ReadPosRankSum=-0.043;SOR=0.376;set=HC	GT:AD:AF:DP	1/1:1,560:1.00:561
chr17	59485555	rs1057987	C	T	27755.77	.	AC=2;AF=1.00;AN=2;DB;DP=1099;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,1050:1.00:1050
chr17	59489893	rs9907379	T	C	12749.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.81;ReadPosRankSum=-1.022;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:2,492:1.00:494
chr17	59557600	rs3744438	C	T	22003.77	.	AC=2;AF=1.00;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	1/1:1,850:1.00:851
chr17	59560463	rs7218485	C	T	19727.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:0,750:1.00:750
chr17	59560974	.	A	AGTGTGTGTGTGTGT	334.75	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.74;QD=55.79;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	59857809	rs4988351	C	G	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	59955426	rs606072	T	G	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	60043884	rs671347	G	A	21452.77	.	AC=2;AF=1.00;AN=2;DB;DP=848;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,839:1.00:839
chr17	60070111	rs11375626	G	GT	1680.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	60070140	rs11375627	C	CT	459.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	60142662	.	CG	C	1470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DP=988;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.100;QD=1.93;ReadPosRankSum=-2.483;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:623,138:0.18:761
chr17	60142710	.	G	GC	9134.73	.	AC=2;AF=1.00;AN=2;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=36.54;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	60215748	rs11079465	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.67;QD=24.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	60217236	rs56068498	A	G	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	60365992	rs149569922	C	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.57;QD=34.16;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	60366787	.	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=5.172;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.125;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr17	60464688	rs9909704	C	T	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	60472623	rs11079476	C	T	4804.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	60503892	rs2543409	A	G	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.41;QD=27.53;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	60503921	rs2319055	T	C	2095.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.541;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.573;MLEAC=2;MLEAF=1.000;MQ=47.07;MQRankSum=-2.020;QD=28.71;ReadPosRankSum=-0.458;SOR=2.932;set=HC	GT:AD:AF:DP	1/1:2,71:0.97:73
chr17	60598037	.	TA	T	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-1.274;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr17	60651884	rs11314763	GT	G	465.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.535;QD=11.94;ReadPosRankSum=1.117;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:7,32:0.82:39
chr17	60654358	rs4539664	G	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	60657334	rs12451705	C	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	60683503	rs8078132	A	G	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	60742348	rs2252814	G	T	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr17	60744596	.	T	C	4416.77	.	AC=2;AF=1.00;AN=2;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	60748926	rs729647	C	T	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	60753789	rs145896776	C	T	17612.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr17	60758273	rs2245463	G	C	24930.77	.	AC=2;AF=1.00;AN=2;DB;DP=994;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,982:1.00:982
chr17	60759340	rs2429389	A	G	19856.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr17	60759347	rs2460300	A	G	18750.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	60766224	rs2465430	A	G	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	60766483	rs2465429	A	G	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	60767015	rs2429387	G	A	23505.77	.	AC=2;AF=1.00;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	1/1:0,889:1.00:889
chr17	60767151	rs740698	C	T	34105.77	.	AC=2;AF=1.00;AN=2;DB;DP=1306;set=Intersection	GT:AD:AF:DP	1/1:0,1294:1.00:1294
chr17	60767461	rs2465426	C	G	6384.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	60767953	rs11357719	GC	G	15995.73	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:1,533:1.00:534
chr17	60768243	rs2465425	A	G	10077.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=-0.510;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:2,392:0.99:394
chr17	60778932	rs2251393	G	A	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	60779025	rs2251391	A	G	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	60821674	.	G	C	1363.77	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	60824224	rs17746153	A	G	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	61315272	rs2460111	G	A	6614.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	61432774	rs4968765	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	61457217	rs8065950	G	C	20396.77	.	AC=2;AF=1.00;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	1/1:0,801:1.00:801
chr17	61473325	rs2270133	C	A	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	61556527	rs4296	A	G	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	61660889	rs66502552	CG	C	18078.73	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr17	61710229	rs58142675	G	T	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	61776479	rs1877317	T	C	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	61781331	rs3830487	T	TAGAACC	23656.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=996;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.17;MQRankSum=0.737;QD=25.97;ReadPosRankSum=0.750;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:4,907:1.00:911
chr17	61781980	.	T	TG	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.908;QD=2.79;ReadPosRankSum=-1.899;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr17	61782325	rs9897229	T	C	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	61783908	rs3817182	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	61790917	rs16947051	G	C	8938.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	61805607	rs2137144	G	A	10481.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chr17	61805747	rs4968597	G	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	61829157	rs11283431	A	ATAGTGTT	3396.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	61829989	rs3785572	C	T	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	61838196	rs374704881	CA	C	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.764;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:102,59:0.37:161
chr17	61838259	rs11654841	G	A	12011.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr17	61884120	rs2251164	G	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	61888693	rs2584629	T	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	61889213	rs3217509	G	GA	13025.73	.	AC=2;AF=1.00;AN=2;DB;DP=462;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	61892862	rs2247435	G	A	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	61898063	rs3833114	C	CGCTTGAACCTGGAAGACGG	1355.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=54.23;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	61898135	rs2665836	C	A	2584.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.289;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=-0.730;QD=19.15;ReadPosRankSum=-1.641;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:16,119:0.88:135
chr17	61901197	rs2727288	T	A	18299.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr17	61901439	rs2584627	T	C	18223.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr17	61901641	rs894407	T	C	26059.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr17	61901657	rs894406	A	G	27823.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,671:1.00:671
chr17	61902371	rs148454168	C	T	9011.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	61902822	rs716880	C	G	24703.77	.	AC=2;AF=1.00;AN=2;DB;DP=964;set=Intersection	GT:AD:AF:DP	1/1:0,925:1.00:925
chr17	61903445	rs2584625	G	C	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	61904337	rs141581810	TCCACTTCCAGTTTC	T	4108.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	61904465	rs28362566	C	CG	653.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	61904724	rs2665834	T	C	13825.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=1.024;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	61904728	rs2727287	G	A	14247.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr17	61905027	rs60005475	G	T	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	61906679	rs2584623	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	61906846	rs2665833	T	C	9900.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr17	61908055	.	CTT	C,CT	1655.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=125;set=Intersection	GT:AF:DP	1/2:0.24,0.66:118
chr17	61908271	rs968719	C	T	11446.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr17	61908556	rs13030	C	T	18166.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr17	61912261	rs2665832	C	T	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	61919723	rs2665799	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.89;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	62020572	.	CAGAGAG	C,CAG	4018.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=152;set=Intersection	GT:AF:DP	1/2:0.17,0.83:103
chr17	62022659	rs58028318	A	AG	3679.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	62045293	rs11418006	C	CA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.931;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr17	62049235	rs9892013	A	G	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	62075994	rs76735942	G	GA	16766.73	.	AC=2;AF=1.00;AN=2;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=39.08;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,429:1.00:429
chr17	62080969	rs4141180	A	C	10891.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr17	62083929	rs6504194	A	G	11559.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr17	62122145	rs196915	A	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	62122677	rs196917	G	A	7462.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	62123022	rs196918	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	62125272	rs196923	A	G	10381.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:4,413:0.99:417
chr17	62130389	rs10689374	G	GCCT	3076.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	62132309	rs196931	C	T	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	62132330	rs4968607	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	62141455	rs187826	A	G	9515.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr17	62144344	rs16947425	C	A	12341.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:1,462:1.00:463
chr17	62156933	rs196947	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	62228161	rs2291678	T	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	62232276	rs61736718	G	A	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	62254983	rs1967130	G	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	62265838	rs36104018	TC	T	8717.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	62270785	rs2166290	T	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	62270823	rs72009320	GCTTC	G	3920.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	62270941	rs34343500	C	T	13913.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.77;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,540:1.00:540
chr17	62385609	.	A	AAAAC	4268.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=0.229;QD=43.12;ReadPosRankSum=-1.233;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:2,97:0.98:99
chr17	62386078	rs28670385	T	C	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	62401118	rs2812	T	C	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	62406971	rs2070783	A	G	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	62463825	rs199721035	T	TG	2662.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	62754586	rs9908143	T	C	9445.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	62758984	rs11374577	G	GC	406.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	62782689	rs6504255	T	C	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	62817802	.	C	T	2068.77	.	AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.19;QD=27.96;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	62924044	rs6504263	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	62952689	rs3960389	C	G	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.21;QD=26.00;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	63052344	rs12945514	G	T	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	63052361	rs7216195	C	G	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	63133804	rs2585858	A	G	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	63154324	rs12452228	G	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	63156467	rs16960740	G	A	6087.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	63164158	rs141412481	TA	T	975.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	63533423	rs7219582	C	A	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	63533789	rs9915936	T	C	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	63534036	rs76682777	AC	A	4010.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	63534250	rs8078753	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	63534478	rs35399989	G	A	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	63822357	rs62065084	T	C	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	64001925	rs1015098	G	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	64002046	rs3055984	A	AATACT	211.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	64023483	rs11079627	A	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	64023493	rs35334393	T	TA	998.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:3,49:0.94:52
chr17	64023642	rs11079628	A	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	64024255	rs56239919	A	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.18;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	64024255	.	A	AT	24	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9998;HP=2;HapScore=2;MGOF=22;MMLQ=27;MQ=69.07;NF=2;NR=0;PP=24;QD=43.9228802356;SC=CTACATCTCAAAGCATCAATC;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=64024263;WS=64024254;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	64025069	rs11079632	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	64025435	rs60700240	T	TTAATCA	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	64025926	rs9908964	G	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	64050007	rs11079637	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	64062830	rs908713	T	A	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	64128760	rs229854	A	T	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.56;SOR=3.489;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	64208230	rs6933	G	A	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	64208396	rs1558359	G	A	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	64210757	rs4581	C	A	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	64216644	rs3744317	G	A	5180.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	64298959	rs3833857	T	TG	17643.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=743;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.298;QD=24.27;ReadPosRankSum=1.363;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:10,717:0.99:727
chr17	64684565	rs1010546	C	T	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	64685001	rs16960016	C	T	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	64685078	rs2227857	G	A	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	64735035	rs5821506	C	CT	5255.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=0.457;QD=23.67;ReadPosRankSum=0.736;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:2,220:0.99:222
chr17	64735143	rs4324167	G	A	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr17	64737717	rs3803821	T	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	64738635	rs61761552	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	64783081	rs6504459	G	A	8934.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr17	64785191	rs11420909	T	TG	1754.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	64875035	rs2286676	C	T	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	64881075	rs2286678	A	G	15867.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:2,608:1.00:610
chr17	65119931	.	CTG	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.359;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr17	65341976	rs62086002	A	G	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	65362552	rs11079691	T	A	21561.77	.	AC=2;AF=1.00;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	1/1:0,841:1.00:841
chr17	65528801	rs2304278	C	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	65574283	rs2570035	A	G	6984.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	65574437	rs8082003	A	G	4829.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	65665608	rs36013607	AT	A	284.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr17	65689053	rs147971105	G	GT	1463.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;QD=21.53;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	65714359	rs3760226	G	A	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	65718798	rs5821454	TA	T	102.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	65718839	rs999043	C	T	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	65720346	rs11654692	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	65720448	rs34287872	CT	C	34.71	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=0.921;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr17	65722849	rs3744268	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	65730404	rs4790943	G	A	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	65732959	rs7223990	A	G	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	65733119	rs3752647	T	C	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	65734514	rs1542610	A	G	5388.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	65735563	rs2286916	G	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	65737016	rs34886243	CT	C	178.74	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr17	65739627	rs10127	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	65739789	rs2286917	A	G	4935.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	65739797	rs2286918	A	T	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.62;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	65821481	rs12945266	C	T	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	65882457	rs8072824	T	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	65919172	.	CT	C	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.962;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr17	65955651	rs8068790	T	C	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	65962538	rs5821446	A	AT	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.74;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	65972188	rs61489754	TA	T	290.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=18.17;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	65977682	rs7502707	T	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	65988049	rs9891146	T	C	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr17	65989048	rs28368756	T	C	7836.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	66036943	rs141699894	T	TG	4139.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.141;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=3.036;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.79;ReadPosRankSum=-0.422;SOR=0.127;set=HC	GT:AD:AF:DP	1/1:2,188:0.99:190
chr17	66038181	rs62084696	C	G	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	66039350	rs4638	A	G	6973.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr17	66039618	rs35594666	G	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.91;QD=26.46;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	66122027	rs374673808	TA	T	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-1.287;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:41,25:0.38:66
chr17	66364749	rs1558877	T	C	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	66364804	rs1558878	T	C	9741.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr17	66366739	rs3744301	C	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	66420766	rs3785605	T	C	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	66422383	.	T	TG	143	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	66422388	rs3744304	A	G	200.84	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	66422390	rs1006226	C	G	200.84	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	66425995	rs3785610	T	G	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=47.84;SOR=1.654;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	66425995	.	TCC	GCT	1406	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=27;MQ=59.93;NF=26;NR=7;PP=1406;QD=44.2262992382;SC=CTCCCAAGGTTCCGGGATTAC;SbPval=0.77;Source=Platypus;TC=38;TCF=28;TCR=10;TR=33;WE=66426005;WS=66425985;set=Platypus	GT:AD:AF:DP	1/1:5,33:0.87:38
chr17	66425997	rs3785611	C	T	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=42.26;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	66430923	rs10445211	A	G	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	66447073	rs2302783	T	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	66449122	rs883541	G	A	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	66453305	rs71378928	C	G	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	66453344	rs76441646	C	T	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	66518780	rs17550507	TA	T	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.25;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	66519857	rs35723852	C	CT	1262.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=26.87;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	66524987	rs2302230	G	A	7919.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	66526027	rs2302231	G	T	3703.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	66526316	rs2302233	A	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	66533655	rs2907373	A	G	12256.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr17	66536212	rs3214285	CAG	C	1362.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	66536219	rs2286558	G	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	66547829	.	A	AATT	228.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr17	66596463	rs986099	C	T	17020.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,662:1.00:662
chr17	66872802	rs1481	G	C	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	66880081	rs8080098	A	G	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	66880371	rs1470293	G	A	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	66880405	rs3744492	T	C	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	66883719	rs6501839	A	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	66890118	rs4147999	A	G	126.84	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	66899710	rs3744494	C	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	66899725	rs3744495	C	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.94;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	66899733	rs3744496	C	T	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	66925116	rs4147980	G	A	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	66925910	rs4147977	T	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	66925923	rs4147976	C	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	66938232	rs4147958	A	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	66938260	rs4147957	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	66972250	rs2191212	A	T	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	66985397	.	T	TCTCTCACA	241.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=-0.366;QD=21.98;ReadPosRankSum=1.068;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr17	66985992	rs2302294	T	G	4277.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	66986162	rs9902444	A	C	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	66987202	rs2302293	A	T	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	67023755	rs6501947	A	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	67024585	rs12940103	T	C	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	67024799	rs8066758	T	A	3111.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:3,134:0.98:137
chr17	67025183	rs183218936	A	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	67028260	rs2302291	T	C	6807.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=-0.604;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:2,263:0.99:265
chr17	67031369	rs1860448	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	67031457	rs1860447	C	T	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	67075294	rs2302289	C	T	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	67080770	rs11657954	A	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	67080811	rs71144653	CT	C	100.84	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr17	67081130	rs62082718	T	A	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	67081660	.	CAA	CAAAA,C	48	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.59;FR=0.5097,0.4901;HP=16;HapScore=4;MGOF=7;MMLQ=20;MQ=58.07;NF=4,4;NR=1,1;PP=48,12;QD=10.2;SC=TATCCAAAGGCAAAAAAAAAA;SbPval=0.8;Source=Platypus;TC=7;TCF=5;TCR=2;TR=5,5;WE=67081669;WS=67081650;set=Platypus	GT:AF:DP	0/1:0.71:7
chr17	67081732	rs2302133	C	T	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	67081830	rs2302134	T	C	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	67099129	rs2364315	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	67101718	rs7212506	C	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	67109662	rs11659091	G	A	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67109894	rs9282552	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	67119593	rs4603621	G	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	67125840	rs4968839	C	T	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	67131029	.	C	CTTTTTTTTTTTTTT	140.06	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.02;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	67132022	rs7219200	T	C	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	67145290	rs1014235	C	T	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	67150176	rs2886232	T	C	6130.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	67150561	.	CTTT	C	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=-0.000;DP=41;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.68;ReadPosRankSum=0.874;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr17	67152893	rs10605889	CAAAT	C	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	67160186	rs7208382	T	C	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	67170736	rs740520	A	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	67171748	rs12940557	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	67178316	rs4968849	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	67178954	rs4968851	C	T	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.92;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	67178976	rs60708995	GA	G	230.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:3,19:0.86:22
chr17	67181540	rs11658738	C	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	67181548	rs11655199	T	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	67186446	rs17776227	T	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	67188576	rs8070232	A	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67188668	rs8074259	T	C	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	67193150	.	A	AGGGAGG	530.73	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	67211058	rs9909045	T	A	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	67212031	rs11077414	A	G	9970.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr17	67212423	rs9909216	G	A	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	67212574	rs9912127	A	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	67212595	rs11868981	G	A	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	67215712	rs12941264	C	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	67219703	rs11655507	G	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	67219768	rs1468512	C	T	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	67219808	rs142860265	G	A	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	67220060	rs1468513	T	G	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	67245941	rs1420904	G	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67245944	rs1420905	C	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	67249922	rs9909726	T	C	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	67264251	rs145417915	AGATATATCTTAG	A	368.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	67267056	.	A	ATATTTTACAATATTTTAATCTGTAAAAT	230.82	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	67267059	.	G	T	196.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	67267317	rs557491	T	C	8175.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	67279959	rs56193366	C	CAGTA	143	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	67280310	rs564426	A	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	67290840	rs17686569	T	C	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	67293535	rs487382	A	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	67304447	rs11544715	C	T	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	67305364	rs11871086	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	69334553	rs4401085	G	C	3674.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	69334971	.	TATTTC	T	1608.73	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.19;QD=37.41;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	69334972	.	A	C	685	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=7;HapScore=1;MGOF=4;MMLQ=27;MQ=62.19;NF=10;NR=24;PP=685;QD=21.1697415455;SC=TGTTTCTTTTATTTCCTTTCT;SbPval=0.54;Source=Platypus;TC=34;TCF=10;TCR=24;TR=34;WE=69335007;WS=69334962;set=Platypus	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	69334981	.	CTTTCTTTCTTCCTTCCTTT	C	95.90	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.33;QD=23.98;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	70119245	rs12950966	C	G	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	70120551	rs1042667	A	C	8856.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr17	70645032	rs61736066	G	A	11586.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr17	70645446	rs3924958	A	G	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	70845688	rs12449747	C	A	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	70845949	.	CAAA	C,CA	5267.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=3.826;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.481;QD=21.50;ReadPosRankSum=0.631;SOR=0.621;set=HC	GT:AD:AF:DP	1/2:32,53,160:0.22,0.65:245
chr17	70943990	rs2466517	T	C	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	71027543	rs9912666	G	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	71166701	rs7220818	A	G	8994.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	71193633	rs11658510	G	A	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	71197200	rs1026130	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	71201675	rs3829571	T	C	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	71203231	.	C	CAA	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-0.917;QD=8.82;ReadPosRankSum=1.130;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr17	71206030	rs11655892	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	71208960	rs11655656	T	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	71232804	rs904384	C	A	11223.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr17	71239087	rs1566290	G	T	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	71239216	rs5821952	AT	A	109.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.472;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=1.242;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr17	71244630	rs8915	C	T	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	71344584	rs4969105	G	A	6432.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.61;SOR=1.644;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	71344588	rs111569409	G	A	6876.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.93;SOR=1.581;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	71344668	rs75637704	C	T	21143.77	.	AC=2;AF=1.00;AN=2;DB;DP=842;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,834:1.00:834
chr17	71344889	rs9905883	C	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr17	71346353	rs28397959	A	C	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr17	71346750	rs1995163	C	G	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	71346943	rs4969107	A	G	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.19;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	71357810	rs2279732	G	A	15157.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr17	71358045	rs11657033	T	C	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	71365150	.	CA	C	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=1.401;QD=3.00;ReadPosRankSum=-1.581;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr17	71365290	rs867999	G	A	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	71365314	rs867998	A	G	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	71382747	rs7212508	T	C	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	71394066	rs7224026	C	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	71397366	rs11653524	G	A	7566.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	71415245	rs8071352	G	A	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	71418605	rs9894213	T	C	7682.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	71420035	rs6501636	T	C	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	72206117	.	CTTT	C	1091.73	.	AC=1;AF=0.500;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;QD=19.15;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:15,42:0.74:57
chr17	72209858	rs7206926	A	G	20612.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,789:1.00:789
chr17	72245986	rs36208397	CCACTGTGGGGCTCCTGGGAGACGGAGCCT	C	5630.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=4.898;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.149;QD=24.06;ReadPosRankSum=-1.687;SOR=1.991;set=HC	GT:AD:AF:DP	1/1:4,230:0.98:234
chr17	72246587	rs147304485	C	T	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	72277879	rs3803792	A	G	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	72281367	rs6501706	A	G	11367.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr17	72305753	rs2290957	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	72305793	rs12051676	C	T	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	72306116	rs66769719	CCT	C	10762.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	72308319	rs1979370	G	A	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	72308403	rs4239008	G	A	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	72308410	rs4239009	C	T	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	72308447	rs1979371	G	A	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	72310476	rs2054400	G	A	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	72321928	rs7207519	T	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	72322881	rs8082699	G	A	11517.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr17	72330002	rs10625501	C	CTT	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.253;QD=16.93;ReadPosRankSum=1.013;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr17	72332849	rs1111596	A	G	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	72338164	rs11285065	TC	T	5370.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	72338765	rs12601559	G	A	9178.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	72339369	rs72852205	C	T	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	72339501	rs62063599	C	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	72339542	rs72852209	C	T	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	72340553	rs11870297	C	T	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	72346736	rs12451539	C	T	14848.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.33;ReadPosRankSum=-0.209;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:2,562:1.00:564
chr17	72346855	rs11077744	T	C	14156.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,547:1.00:547
chr17	72346868	rs2382644	C	T	16003.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,614:1.00:614
chr17	72348741	rs11655890	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	72348810	rs1814832	A	C	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	72350362	rs72852235	G	A	8513.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	72351406	rs2271536	C	T	11607.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,459:1.00:459
chr17	72352686	rs55690660	G	A	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	72356484	rs11870955	T	A	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	72366695	rs2382647	C	A	11849.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr17	72368550	rs11658891	T	C	16777.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr17	72519798	rs1472726	C	T	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.69;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	72521760	.	GTC	G	84	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=25;MQ=59.1;NF=3;NR=2;PP=84;QD=18.2;SC=CTGTCTGTCTGTCTCTCTCTC;SbPval=0.48;Source=Platypus;TC=25;TCF=12;TCR=13;TR=5;WE=72521769;WS=72521748;set=Platypus	GT:AD:AF:DP	0/1:20,5:0.20:25
chr17	72521897	rs17553512	G	A	9839.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr17	72527718	rs965229	A	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.41;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	72537894	rs2140253	A	G	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	72538917	rs7215669	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	72541052	rs2292107	C	T	23786.77	.	AC=2;AF=1.00;AN=2;DB;DP=927;set=Intersection	GT:AD:AF:DP	1/1:0,925:1.00:925
chr17	72541838	rs809740	A	G	8314.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	72541980	rs783230	A	G	7623.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	72613589	rs581157	T	G	6942.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	72615293	rs12950039	C	T	17145.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr17	72691928	rs2034310	T	C	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:1,250:1.00:251
chr17	72699384	rs749780	C	A	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	72700943	rs35489971	A	G	21055.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	1/1:2,804:1.00:806
chr17	72736755	rs11651291	A	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	72762883	rs72851708	C	T	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	72762901	rs4788849	A	T	716.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	72768970	rs2305214	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	72769694	rs878907	A	G	6698.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	72771637	rs750018	C	T	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.97;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	72791088	rs3830567	A	AG	1369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.243;QD=9.93;ReadPosRankSum=-1.324;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:46,92:0.67:138
chr17	72791266	rs9910463	G	A	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	72791618	rs7221435	A	G	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	72838481	rs939536	C	T	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	72839130	rs139495021	A	AGCTCCGGGG	1173.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	72848758	rs75018418	C	CG	14817.73	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:2,352:0.99:354
chr17	72848772	rs199662980	G	GC	13365.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	72848778	rs201209302	C	CG	11611.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	72851133	rs689730	A	G	8249.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	72862705	rs2070918	G	A	13211.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,502:1.00:502
chr17	72888836	rs489152	G	A	6863.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	72889676	.	G	GGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATC	7755.73	.	AC=2;AF=1.00;AN=2;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=31.27;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:3,245:0.99:248
chr17	72927123	rs6501741	G	T	31958.77	.	AC=2;AF=1.00;AN=2;DB;DP=1247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,1235:1.00:1235
chr17	72929380	rs2035835	G	C	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	72937605	rs7210616	G	A	6350.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	72937851	rs9890664	G	A	14352.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr17	72938100	rs1542752	T	C	11379.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr17	72939446	rs4789110	C	T	16902.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,661:1.00:661
chr17	72939663	rs8069015	G	A	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	72939854	.	AAC	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=0.754;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr17	72943126	rs8066909	G	A	10576.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	72948369	rs17853024	A	G	7294.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	72949864	rs117332710	C	G	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	72951823	rs9899490	C	T	6916.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	72951845	rs9903414	G	A	9537.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	72952017	rs9906160	A	G	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	72955227	rs902727	C	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	72955844	.	C	A	299.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr17	72957962	rs10719287	CT	C	3794.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	72959000	rs7503218	G	C	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	72983888	rs7222918	A	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	72995412	rs4789125	G	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.88;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	73096951	rs4238978	A	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	73126746	rs10715821	GT	G	18883.73	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr17	73127024	rs9910084	C	G	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	73127217	rs3736075	G	C	6987.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	73138711	rs372163854	AGGAGGGGAG	A	295.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.64;QD=36.97;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	73138751	rs111454348	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=21.69;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	73143574	rs1382508	T	A	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	73177444	rs1471453	C	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	73204535	.	CAAA	C	358.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	73205976	rs34126097	T	C	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	73208176	.	T	TGC	4856.73	.	AC=1;AF=0.500;AN=2;DP=374;set=Intersection	GT:AD:AF:DP	0/1:46,226:0.83:272
chr17	73208184	rs202030397	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=4.375;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.400;QD=0.31;ReadPosRankSum=0.538;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:238,36:0.13:274
chr17	73208205	rs8075486	G	T	6487.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=-0.132;QD=24.57;ReadPosRankSum=0.157;SOR=0.575;set=HC	GT:AD:AF:DP	1/1:8,256:0.97:264
chr17	73208205	.	GG	TG	2094	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=27;MQ=59.78;NF=0,53;NR=85,101;PP=2094,430;QD=24.6941176471;SC=GTGTGTGTGTGGGTATTTTGA;SbPval=1.0;Source=Platypus;TC=106;TCF=0;TCR=106;TR=85,154;WE=73208213;WS=73208195;set=Platypus	GT:AD:AF:DP	0/1:13,154:0.92:167
chr17	73208205	.	GG	GTTG	2094	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=27;MQ=59.78;NF=0,53;NR=85,101;PP=2094,430;QD=24.6941176471;SC=GTGTGTGTGTGGGTATTTTGA;SbPval=1.0;Source=Platypus;TC=106;TCF=0;TCR=106;TR=85,154;WE=73208213;WS=73208195;set=Platypus	GT:AD:AF:DP	0/1:21,85:0.80:106
chr17	73221439	rs2291029	C	T	8500.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	73222847	rs1551967	C	T	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	73228101	rs899318	T	C	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	73228144	rs2291030	T	C	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	73240836	rs4789156	T	C	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	73258086	rs201957984	GC	CG	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,96:0.98:98
chr17	73265629	.	CTTTTTTTTTTTTT	C	1836.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=7.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.22;ReadPosRankSum=1.599;SOR=3.418;set=HC	GT:AD:AF:DP	1/1:4,53:0.93:57
chr17	73269530	rs1809352	A	G	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	73274181	rs2306217	T	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	73274500	rs3214917	T	TA	2047.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=26.94;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	73274558	rs77860123	G	A	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	73279624	rs7213318	A	G	6616.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	73279700	rs4788882	C	T	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	73328773	rs1529844	T	C	5991.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	73328989	rs16967789	G	A	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	73389446	rs4788890	A	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	73402246	rs7220246	C	A	3051.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.105;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=1.553;SOR=0.249;set=HC	GT:AD:AF:DP	1/1:1,121:0.99:122
chr17	73482110	rs11331365	TC	T	3063.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	73482664	rs9899149	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	73484753	rs11652993	C	G	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	73485033	rs11867527	T	C	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	73485781	rs8079362	C	T	28980.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=1126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=1.727;SOR=0.337;set=HC	GT:AD:AF:DP	1/1:1,1107:1.00:1108
chr17	73488794	rs4078259	C	T	23719.77	.	AC=2;AF=1.00;AN=2;DB;DP=917;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr17	73489220	rs7215753	T	C	10404.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr17	73489567	rs4078474	C	G	17866.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr17	73490611	rs8078131	A	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	73491894	rs11077792	G	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	73494200	rs72851930	G	C	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	73494963	rs9894026	G	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	73497415	rs8081353	T	C	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.31;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	73497415	.	TTT	CTC	2621	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=25;MQ=60.0;NF=47;NR=20;PP=2621;QD=20;SC=ATCTAGGTGATTTCAACACCT;SbPval=0.71;Source=Platypus;TC=77;TCF=51;TCR=26;TR=67;WE=73497425;WS=73497405;set=Platypus	GT:AD:AF:DP	1/1:10,67:0.87:77
chr17	73497417	rs8081354	T	C	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=1.337;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	73497439	rs8075850	G	A	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	73497794	rs9892311	T	C	7689.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	73498483	rs7503373	T	C	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	73499697	rs7207376	T	C	12938.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr17	73500263	rs140662379	C	T	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:3,43:0.93:46
chr17	73500288	rs112890467	G	T	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:3,91:0.97:94
chr17	73502219	rs11868796	G	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	73502645	rs72851936	G	A	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	73504416	rs6501815	T	C	12084.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr17	73512884	rs8079373	T	G	15190.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:1,598:1.00:599
chr17	73513156	rs8074291	G	A	12192.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr17	73513182	rs113075319	CGCCCTCCCT	C	14697.73	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:4,406:0.99:410
chr17	73513289	rs6501818	C	G	7291.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	73513415	rs11316466	CT	C	1141.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	73513619	rs56895494	C	A	13163.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr17	73513867	rs58787501	G	A	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	73514944	rs62088466	A	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=1.775;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	73515055	.	A	AT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.442;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:143,35:0.20:178
chr17	73515237	rs55786842	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	73518284	rs6501820	G	C	6068.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	73518328	rs77247739	A	C	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,101:0.99:102
chr17	73519137	rs62088468	A	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	73519589	rs62088469	T	C	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	73519668	rs72851947	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	73539631	rs6501822	A	G	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	73552062	rs2305528	G	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	73552185	rs1671036	G	A	12669.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr17	73565262	rs2305526	T	A	11593.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr17	73587268	rs2290455	C	T	21931.77	.	AC=2;AF=1.00;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr17	73587347	rs11656113	G	A	10598.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr17	73587640	rs707709	T	C	8331.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr17	73588027	rs746840	C	T	7646.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	73588058	rs736522	G	T	16916.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	73588067	rs736523	A	G	17098.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	73590436	rs820254	A	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	73590522	rs820255	G	A	6805.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	73590817	rs2305524	C	T	10778.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr17	73590830	rs820256	T	G	10994.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr17	73597544	rs11871553	A	G	13948.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,554:1.00:554
chr17	73598904	rs62089251	C	G	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	73601517	.	T	TAA	876.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.582;QD=19.48;ReadPosRankSum=0.670;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:3,42:0.93:45
chr17	73601755	rs936054	G	A	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	73602081	rs8068464	G	A	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	73607468	rs11077795	A	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=24.75;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	73607549	.	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.117;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr17	73608203	rs820140	T	C	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	73608744	rs11336364	CA	C	711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.408;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.683;QD=9.89;ReadPosRankSum=0.833;SOR=1.657;set=HC	GT:AD:AF:DP	0/1:18,54:0.75:72
chr17	73609112	rs820142	G	A	8338.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	73611467	rs3803729	A	G	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	73611724	rs35131709	G	GTC	10452.73	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=43.02;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	73611823	rs820144	T	C	11182.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.19;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr17	73612642	rs11439064	A	AT	25610.73	.	AC=2;AF=1.00;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr17	73613975	rs820145	G	A	11902.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr17	73614357	rs1093992	G	A	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr17	73615644	rs820147	C	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	73615887	rs820148	A	G	12235.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,465:1.00:465
chr17	73615933	rs820149	T	C	11694.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	73615962	rs820150	T	C	15409.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr17	73615983	rs820151	G	A	14353.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr17	73616088	rs820152	T	C	8883.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr17	73616211	rs3840857	TG	T	4601.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:1,126:0.99:127
chr17	73616239	rs820153	C	G	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	73616446	rs820154	A	T	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	73616853	rs10808	G	C	11380.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr17	73616864	rs11470	C	A	12147.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:1,460:1.00:461
chr17	73616920	rs10814	A	G	13273.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr17	73617104	rs820182	A	C	15983.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr17	73617377	rs820183	A	G	5307.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	73617403	rs820184	T	C	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	73618371	rs75625838	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	73619920	rs820186	G	A	11132.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,429:1.00:429
chr17	73619952	.	GCTTCT	G	14977.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=46.09;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr17	73619953	.	CT	GG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=24;MQ=59.98;NF=117;NR=65;PP=2947;QD=20;SC=GGACCGGTGGCTTCTGGGGGT;SbPval=0.75;Source=Platypus;TC=219;TCF=131;TCR=88;TR=182;WE=73619965;WS=73619943;set=Platypus	GT:AD:AF:DP	1/1:37,182:0.83:219
chr17	73619955	.	TCTG	T	2948	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=27;MQ=60.05;NF=51;NR=66;PP=2948;QD=20;SC=ACCGGTGGCTTCTGGGGGTGG;SbPval=0.6;Source=Platypus;TC=123;TCF=55;TCR=68;TR=117;WE=73619965;WS=73619943;set=Platypus	GT:AD:AF:DP	1/1:6,117:0.95:123
chr17	73619958	.	G	GGT	14975.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=45.11;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr17	73620804	rs820187	C	A	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	73621432	rs820188	A	G	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	73625286	rs820190	G	A	9072.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr17	73625478	rs820191	T	C	9354.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr17	73625629	rs820192	A	C	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	73626208	rs820193	G	C	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.14;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	73626817	rs820194	G	A	8032.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	73626829	rs820195	C	G	7800.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=43.10;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	73626921	.	T	TG	1345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=8.738;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.552;QD=8.06;ReadPosRankSum=-0.106;SOR=1.408;set=HC	GT:AD:AF:DP	0/1:94,73:0.44:167
chr17	73626983	rs9896073	G	C	10698.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=26.09;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr17	73627440	rs60199317	C	T	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	73627539	rs820196	T	C	9746.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr17	73627565	rs820197	A	G	9234.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr17	73647138	rs1661744	CA	TG	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	73658489	rs820159	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	73661411	rs820157	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	73663296	rs2165635	CT	AG	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	73663313	rs864234	C	A	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	73664546	.	G	GT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.089;QD=0.61;ReadPosRankSum=0.932;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr17	73687495	rs820218	G	A	9034.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	73698557	rs820232	C	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	73702317	rs820230	A	G	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	73702402	rs820229	T	C	10850.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr17	73720727	rs3862481	G	A	10754.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr17	73720900	rs820167	A	G	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	73723453	rs34275940	GC	G	7471.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	73725239	rs56375128	C	CA	1047.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.369;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.000;QD=8.38;ReadPosRankSum=0.488;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:40,85:0.68:125
chr17	73732025	rs820174	C	T	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	73732045	rs820175	T	C	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	73732522	rs820176	T	G	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	73732696	rs376183156	G	A	8401.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	73732810	rs820177	A	C	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	73733315	rs820179	G	C	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	73746146	rs820387	T	C	10567.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	73751042	rs3988219	C	CACAT	9332.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	73752999	rs2249613	C	G	7196.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	73753503	rs871443	T	C	13148.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr17	73759038	rs35008831	TC	T	8818.73	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr17	73759304	rs820386	G	T	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr17	73760626	rs56038529	T	C	13611.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr17	73760820	rs55715426	G	A	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	73781075	rs11335367	GC	G	61.25	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr17	73812909	rs9908146	A	G	14072.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr17	73816026	rs11868471	A	G	21708.77	.	AC=2;AF=1.00;AN=2;DB;DP=864;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,849:1.00:849
chr17	73819525	rs8078208	C	T	9118.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr17	73824121	rs7210574	T	C	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	73826406	rs2290769	G	C	230.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	73827205	rs1135688	T	C	9185.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:1,354:1.00:355
chr17	73828903	rs112267124	G	A	13049.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:2,505:1.00:507
chr17	73830996	rs17581728	C	T	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	73832384	rs74410877	C	T	13866.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr17	73833087	rs142821095	C	CCCTCCTCCAGGGCCCCTGGTGGAGAA	893.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	73836162	rs7223416	C	G	5447.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	73837142	rs8067076	A	C	7310.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	73837209	rs11868308	C	T	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	73838816	rs3744006	G	A	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	73838857	rs11870883	C	T	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	73839214	rs3744008	G	C	6221.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,245:0.99:247
chr17	73839366	rs3744009	C	T	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	73839498	rs9903200	G	A	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	73840243	rs3744010	G	A	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	73844748	rs2290771	A	G	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	73847613	rs936393	A	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	73847799	rs936391	G	A	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	73871467	rs3744017	G	A	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	73871911	rs3744021	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	73872948	rs1055129	A	G	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	73872969	rs3833085	A	AG	968.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	73874012	rs3903010	T	G	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.19;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	73874071	rs4600514	G	A	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	73874138	rs4072479	G	C	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	73874684	rs116044941	G	C	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	73886888	rs3760128	A	G	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	73887807	rs11270925	TGCACACACACACGTGCTCACA	T	1873.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	73888354	rs34974290	G	A	16554.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,632:1.00:632
chr17	73888423	rs7222755	A	G	26963.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,608:1.00:608
chr17	73888427	rs7222757	A	C	26771.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,606:1.00:606
chr17	73888672	rs3744028	T	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	73888743	rs3744027	G	A	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	73894804	rs7370	G	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	73897033	rs111405920	A	AC	24606.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=1015;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.106;QD=24.98;ReadPosRankSum=1.749;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:10,975:0.99:985
chr17	73897046	rs9902371	A	G	46568.77	.	AC=2;AF=1.00;AN=2;DB;DP=1099;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,1092:1.00:1092
chr17	73900688	rs3744015	T	C	8523.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	73900851	.	GCCCCC	G,GC	2410.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.263;QD=35.45;SOR=0.399;set=HC	GT:AD:AF:DP	1/2:1,25,42:0.37,0.62:68
chr17	73906934	rs9302994	G	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	73908566	rs9895947	A	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	73909948	rs55793071	C	T	16088.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,621:1.00:621
chr17	73910165	rs144888266	G	C	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	73913729	rs4788912	C	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	73913965	rs11288315	TC	T	3617.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	73922941	rs2305913	T	C	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	73926121	rs1135889	C	A	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	73931787	rs59867239	G	A	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	73931847	rs7218498	C	G	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	73934130	rs2608882	G	A	5751.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	73942976	rs2666003	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	73944596	rs2666005	T	G	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	74001287	.	G	T	4636.77	.	AC=2;AF=1.00;AN=2;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	74017554	rs74955334	G	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-11.263;QD=2.56;ReadPosRankSum=3.288;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:196,30:0.13:226
chr17	74017573	rs78569674	C	G	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-10.974;QD=2.09;ReadPosRankSum=2.196;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:204,27:0.12:231
chr17	74017594	rs193119748	A	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-10.271;QD=1.65;ReadPosRankSum=-1.556;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:201,24:0.11:225
chr17	74035543	rs7409	T	C	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	74036912	rs2598444	A	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	74037208	rs2598445	G	A	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	74039867	rs1530834	T	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	74046672	rs2665972	A	G	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	74056413	rs2665998	C	T	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	74063523	rs4789241	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	74066447	rs2443168	T	A	13310.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,524:1.00:524
chr17	74077797	rs1043149	C	T	32419.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.651;ClippingRankSum=0.000;DB;DP=1284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.94;ReadPosRankSum=0.476;SOR=0.324;set=HC	GT:AD:AF:DP	1/1:1,1249:1.00:1250
chr17	74080443	rs2305347	C	T	12567.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr17	74152366	rs881502	A	G	6387.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	74161764	rs35164451	C	CT	912.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=18.63;ReadPosRankSum=0.382;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr17	74208424	rs9911122	G	A	8314.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	74208622	rs35372072	T	TA	472.74	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr17	74222002	rs149117768	G	A	6886.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	74261677	rs2585751	T	C	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.04;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	74261929	rs71382201	A	G	8575.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	74270069	rs71815	T	C	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	74273165	rs164011	G	A	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	74274998	rs347676	G	A	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	74275030	rs182972	TG	CA	13598.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	74276067	rs164010	C	T	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	74283253	rs8072620	A	G	9186.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr17	74283769	rs346785	T	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	74286082	rs4789273	C	T	9766.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=43.41;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	74286106	rs4789274	C	T	10402.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=41.45;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	74286173	rs17509527	A	G	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr17	74287204	rs2279052	C	G	8338.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr17	74287389	rs2279053	T	C	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	74287594	rs2279054	G	A	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	74288564	rs35035566	CTGA	C	20333.73	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:3,764:1.00:767
chr17	74289500	rs3803737	G	A	9244.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	74289705	rs6501880	A	G	15731.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr17	74289839	rs6501881	G	A	10293.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr17	74289875	rs6501882	C	T	10071.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	74289908	rs6501883	A	G	12302.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr17	74290097	rs7225131	T	A	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	74307737	rs10459	T	C	11038.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr17	74381567	rs346803	G	A	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr17	74383475	rs3744037	T	C	9040.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr17	74396421	rs3809691	G	C	10089.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr17	74397026	rs3809693	G	A	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	74401405	rs11290311	AG	A	7879.73	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:3,305:0.99:308
chr17	74401522	rs445683	C	T	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	74468552	rs12942767	A	G	9463.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr17	74471298	rs12951122	G	A	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	74473593	rs3833088	A	AG	2985.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:4,115:0.97:119
chr17	74475024	rs3744045	G	A	7032.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	74476089	.	ATG	A	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=8.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.039;SOR=1.886;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr17	74477340	rs3826288	A	G	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	74477691	rs11870168	C	T	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	74527846	rs3217541	T	TG	4772.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	74536333	rs77817682	C	G	7931.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.303;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.33;ReadPosRankSum=-0.841;SOR=0.659;set=HC	GT:AD:AF:DP	1/1:9,317:0.97:326
chr17	74536337	rs8176324	G	C	8832.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.01;ReadPosRankSum=-0.770;SOR=0.666;set=HC	GT:AD:AF:DP	1/1:15,312:0.95:327
chr17	74538466	rs4647881	A	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	74539025	rs3803740	C	T	6523.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	74539092	rs4318240	C	T	15650.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr17	74554739	rs4648343	C	G	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	74557681	rs4510053	A	C	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	74557803	rs60161580	GT	G	5050.73	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:4,253:0.98:257
chr17	74559287	rs4451979	T	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	74563653	rs2241918	A	G	8318.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr17	74570408	rs7207173	A	G	7465.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	74581914	rs3135934	C	G	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chr17	74581945	rs12449329	AA	GC	7044.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	74582025	rs1867561	G	C	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	74622774	rs35948039	T	C	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	74625686	rs8077382	A	G	9383.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr17	74625715	rs8081258	T	C	8939.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr17	74625868	rs200424573	T	TTG	191.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.611;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:58,21:0.27:79
chr17	74625869	.	T	TG	590.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.555;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:32,47:0.59:79
chr17	74681435	rs2286593	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr17	74684598	rs4788942	C	T	7451.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	74684858	rs7219390	T	C	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	74707050	rs71383084	G	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.82;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	74707086	rs372946783	CGTCGCCGCGCCCG	C	283.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.93;QD=35.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	74716759	rs12943725	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	74721967	rs376352692	TA	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.655;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.087;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.634;QD=1.15;ReadPosRankSum=-0.948;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr17	74728938	rs4789351	C	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	74729588	rs34243161	C	CT	2105.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:37,121:0.77:158
chr17	74732507	rs237058	A	G	18784.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;ClippingRankSum=0.000;DB;DP=741;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=-1.118;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:2,725:1.00:727
chr17	74733099	rs237057	G	A	7675.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	74734323	rs237054	G	A	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	74734598	rs237053	C	T	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	74736999	.	CT	C	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=4.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=2.192;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:96,44:0.31:140
chr17	74750215	rs11399997	C	CT	10956.73	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=37.02;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr17	74750331	rs116719	C	T	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	74857515	rs499828	A	C	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	74857676	rs13342029	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	74920957	rs3889146	G	T	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	74921129	rs34056052	C	T	15702.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.099;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=-0.450;SOR=0.226;set=HC	GT:AD:AF:DP	1/1:1,620:1.00:621
chr17	74921257	rs8067585	G	A	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	74922636	rs12450749	G	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	74922652	rs11653088	C	T	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	74929442	rs12600695	A	G	6912.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,264:0.99:266
chr17	74937020	rs75351597	A	C	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	74944585	rs11870033	T	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	74944709	rs9894270	T	C	18229.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,710:1.00:710
chr17	74944934	rs3803745	G	A	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	75085226	rs3214724	TC	T	1281.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	75085260	rs2247814	C	G	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	75085434	rs2678770	G	A	10722.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr17	75190846	rs673918	A	C	7044.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	75203092	rs7226135	C	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	75207966	rs2280269	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	75277430	rs4789430	C	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=26.70;SOR=2.412;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	75303298	rs4789439	T	C	8210.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr17	75316497	rs3760143	C	T	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	75397802	rs139887327	C	CA	952.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-0.495;QD=14.89;ReadPosRankSum=1.859;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:10,54:0.84:64
chr17	75398498	rs34587622	C	T	20639.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.638;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=1.129;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:1,788:1.00:789
chr17	75478481	rs425139	C	T	17918.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr17	75478694	rs416438	T	C	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	75478806	rs392287	C	G	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.17;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	75478809	rs405253	C	T	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.85;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	75483719	rs9902607	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	75483729	.	C	T	634.77	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.90;QD=45.34;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	75484156	rs441670	C	T	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	75484200	rs35261301	TC	T	1805.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	75484700	rs378578	A	G	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chr17	75484781	rs370531	T	C	16519.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,645:1.00:645
chr17	75485014	rs426885	A	C	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	75488973	rs2627198	C	T	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	75489015	rs188747	T	C	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	75489216	rs312797	C	T	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	75489244	rs167498	A	G	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	75489282	rs61127839	C	CA	1072.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	75494705	rs2627223	A	G	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr17	75494746	rs1059485	A	G	4892.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	75494787	rs5822173	T	TC	2324.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.646;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.72;ReadPosRankSum=2.338;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:7,91:0.93:98
chr17	75495065	rs448203	T	C	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	75495397	rs9038	T	C	13204.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr17	75834770	rs9910282	A	G	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	76115301	rs58711252	G	A	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	76115353	rs2748428	T	C	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr17	76116153	rs2926778	T	C	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	76116233	.	CTTTT	C,CTT	564.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=29.72;SOR=2.419;set=HC	GT:AD:AF:DP	1/2:0,11,8:0.58,0.42:19
chr17	76117361	rs2073285	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	76117570	rs2613520	G	C	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	76117971	rs1997978	G	A	8304.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.68;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	76118887	rs1474865	G	C	9185.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr17	76120065	rs2613522	A	G	8147.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr17	76121864	rs2748427	A	G	9807.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr17	76122078	rs761772	T	C	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	76128662	rs1396149	G	C	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	76129339	rs376057	C	A	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=45.40;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	76129342	rs450474	T	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=43.82;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	76129636	rs417780	T	C	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	76130575	rs7208422	A	T	21543.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,837:1.00:837
chr17	76131070	rs12452890	G	A	11393.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr17	76133693	rs55694641	C	T	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	76133746	rs12449680	A	G	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	76134828	rs7221365	C	A	7090.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	76137198	rs369764	T	G	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	76142402	rs2310998	G	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	76142795	rs748708	G	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.22;SOR=1.755;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	76143009	rs7217374	G	A	8816.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	76157266	rs4071641	T	C	14072.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr17	76162178	rs3642	G	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	76168219	rs10358	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	76178748	rs1143697	T	C	5617.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:2,225:0.99:227
chr17	76182766	.	AAGGGG	A	2569.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=3.722;MLEAC=2;MLEAF=1.000;MQ=63.42;MQRankSum=1.448;QD=22.54;ReadPosRankSum=-1.372;SOR=2.475;set=HC	GT:AD:AF:DP	1/1:3,111:0.97:114
chr17	76183043	rs1071664	A	G	23283.77	.	AC=2;AF=1.00;AN=2;DB;DP=911;set=Intersection	GT:AD:AF:DP	1/1:15,876:0.98:891
chr17	76198458	rs11649894	C	T	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	76198754	rs35822441	T	C	11169.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:1,435:1.00:436
chr17	76211079	rs4789551	T	C	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	76218857	rs4789559	G	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	76219123	.	TAGACTAGCTGGGGTGCCC	T	788	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=10;MMLQ=27;MQ=61.53;NF=0;NR=3;PP=788;QD=277.0;SC=CTGGGGTGCCTAGACTAGCTG;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=3;WE=76219148;WS=76219113;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr17	76219591	rs2071214	G	A	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	76228088	rs8068943	T	A	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	76235015	rs880190	G	A	2399.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=0.714;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,93:0.99:94
chr17	76267843	rs872359	G	A	10136.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	76392525	rs79745319	A	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	76394195	rs2292645	T	C	9119.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr17	76400251	rs3744218	C	G	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	76410871	rs3744216	G	A	6128.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	76411154	rs3833108	T	TG	1109.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,44:0.96:46
chr17	76422473	rs4969188	T	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	76423097	rs2271613	G	A	9894.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr17	76424482	rs651806	A	G	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	76433685	rs2289757	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	76433898	rs12941494	T	C	9819.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	76435448	rs12150123	C	T	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	76447835	rs2305038	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	76451921	rs8069561	A	G	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	76456352	rs623336	T	C	9685.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr17	76457559	rs692529	T	G	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	76458906	rs75758039	A	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	76471378	.	G	A	8267.77	.	AC=2;AF=1.00;AN=2;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr17	76480848	rs12952246	T	C	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	76481608	rs11077370	A	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	76481693	rs11872051	C	G	10887.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,427:1.00:427
chr17	76481997	rs12944880	T	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	76482256	rs691142	A	G	10237.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr17	76482432	rs691151	A	G	16888.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:1,658:1.00:659
chr17	76488973	rs1983306	A	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=26.74;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	76490409	rs184891603	G	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	76491127	rs691652	TG	CC	14353.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	76495050	rs691291	C	T	11900.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr17	76496350	rs35901117	A	C	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	76496361	rs34124297	C	G	7446.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr17	76496492	rs2028734	A	G	8576.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	76496577	rs2028735	C	T	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	76497778	rs671899	T	C	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	76497920	rs690844	C	A	15863.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,616:1.00:616
chr17	76498248	.	T	C	5883.77	.	AC=2;AF=1.00;AN=2;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	76498692	rs930571	C	T	8714.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr17	76502734	rs11077378	T	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	76503527	rs9894913	G	A	16859.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr17	76503593	rs9896398	T	C	11783.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr17	76503966	rs9902653	T	C	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	76506607	rs867654	G	A	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	76521076	rs56410782	G	A	11953.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr17	76522755	rs373009765	T	G	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	76525592	rs61736293	C	T	13809.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:1,527:1.00:528
chr17	76526638	rs146362556	TA	T	13723.73	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr17	76533259	.	C	CA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-1.368;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr17	76533555	rs141979513	G	T	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	76554118	rs201559797	CACAA	C	17764.73	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr17	76557862	rs894966	T	C	5852.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	76558159	rs2376587	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	76563297	rs117345200	C	T	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	76565341	rs72920970	G	A	8142.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:1,316:1.00:317
chr17	76566938	.	C	CAAAAA	185.74	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr17	76567013	rs12948559	C	T	7292.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.33;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	76567332	rs12949510	C	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	76567707	rs894968	T	C	7013.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	76567883	rs4969148	G	C	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	76567910	rs4969149	G	A	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	76795247	rs117885497	A	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	76867185	rs55743137	G	T	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	76897733	rs12941365	G	T	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	76897974	rs4789936	C	T	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	76970879	rs3744166	A	G	12778.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr17	77021985	.	CCAT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=2.481;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr17	77088790	.	G	GA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=3.780;QD=1.08;ReadPosRankSum=-1.099;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:55,14:0.20:69
chr17	77089515	rs4789891	G	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	77089630	.	G	GA	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=2.098;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:51,22:0.30:73
chr17	77089873	.	C	CCACACACA	764.73	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=40.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	77102966	rs36122090	T	TC	3304.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:2,128:0.98:130
chr17	77751983	rs71368052	C	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	77758484	rs3751956	G	A	11104.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,436:1.00:436
chr17	77768654	rs4889891	C	A	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	77772068	rs9905914	G	A	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	77808240	.	CGTG	C	587.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;ClippingRankSum=0.000;DP=771;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.721;QD=0.87;ReadPosRankSum=1.945;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:616,61:0.09:677
chr17	77809591	.	GC	G	1166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;ClippingRankSum=0.000;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.766;QD=1.71;ReadPosRankSum=2.090;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:552,130:0.19:682
chr17	77916134	rs2650236	G	A	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	77984141	rs35922784	C	T	13668.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr17	78013724	rs2289527	G	C	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	78039178	rs80207190	A	G	5649.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	78061317	rs11150839	A	C	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	78061353	rs11150840	G	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	78061979	rs12942049	A	C	8591.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:1,345:1.00:346
chr17	78064015	rs4889953	G	C	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.160;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=85.307;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-1.168;QD=7.81;ReadPosRankSum=-0.986;SOR=3.359;set=HC	GT:AD:AF:DP	0/1:26,106:0.80:132
chr17	78064216	.	CAGCACGTGCATGAACAACACAGGACACACACA	C	4021.73	.	AC=2;AF=1.00;AN=2;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=39.43;SOR=1.879;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	78071052	rs12952612	T	C	9284.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr17	78073562	rs2304854	A	G	14200.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:2,566:1.00:568
chr17	78078709	rs1800300	T	C	24366.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.386;ClippingRankSum=0.000;DB;DP=923;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.29;ReadPosRankSum=1.112;SOR=0.332;set=HC	GT:AD:AF:DP	1/1:1,892:1.00:893
chr17	78079481	rs8069491	C	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	78079509	rs12452721	T	G	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	78079544	rs3816256	C	G	7162.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	78079597	rs1042393	A	G	7817.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	78079643	rs1800301	C	T	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	78079669	rs1042395	G	A	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	78081526	rs3071247	A	AGCAGCGG	7544.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.96;MQRankSum=-0.619;QD=27.44;ReadPosRankSum=0.156;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:2,273:0.99:275
chr17	78081551	rs2304845	T	C	10371.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	78081707	rs2252455	G	A	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	78081982	rs2241888	G	A	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	78082005	rs2241887	C	T	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	78082504	rs1800304	G	A	7961.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	78083726	rs2278619	A	G	14892.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr17	78084507	rs2304844	G	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	78084688	rs2304843	C	A	23936.77	.	AC=2;AF=1.00;AN=2;DB;DP=948;set=Intersection	GT:AD:AF:DP	1/1:1,935:1.00:936
chr17	78084940	rs199788201	GC	G	2997.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.245;QD=38.93;ReadPosRankSum=1.941;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:2,75:0.97:77
chr17	78084942	rs4889817	G	T	3006.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=80;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:2,75:0.97:77
chr17	78086043	rs2304838	C	T	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	78086846	rs2304836	A	G	9343.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr17	78086953	rs2304833	G	A	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	78087109	rs1800310	A	G	25799.77	.	AC=2;AF=1.00;AN=2;DB;DP=1024;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,1013:1.00:1013
chr17	78090928	rs2304832	G	A	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	78091405	rs1126690	G	A	9633.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr17	78092063	rs1042397	G	A	7114.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	78114033	rs74003638	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	78120846	.	C	CTG	138	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=24;MQ=55.9;NF=1;NR=3;PP=138;QD=40.75;SC=GCCGACCTCGCTGCCGCTGCC;SbPval=0.23;Source=Platypus;TC=16;TCF=1;TCR=15;TR=4;WE=78120854;WS=78120836;set=Platypus	GT:AD:AF:DP	0/1:12,4:0.25:16
chr17	78155182	rs9906472	A	C	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	78163864	rs62074374	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	78165007	rs55775426	G	A	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	78165202	rs74951924	C	T	7191.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	78171944	rs2066964	G	C	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	78175483	rs2304856	T	C	11843.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr17	78175854	rs3813063	C	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	78176233	rs8069255	T	A	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	78178170	rs4889996	A	G	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	78178182	rs4889836	T	C	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.59;SOR=1.545;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	78178189	rs4889997	G	A	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	78178830	rs11653893	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	78178893	rs11652075	C	T	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	78180618	rs4889998	A	C	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	78188963	rs4889839	G	A	9879.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	78189009	rs4889840	C	T	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	78252770	rs7219131	T	C	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	78261730	rs17853714	G	A	19419.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:0,751:1.00:751
chr17	78261805	rs7215243	A	G	14182.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr17	78262161	rs17857135	T	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	78263391	.	G	GAAA	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.820;QD=13.76;ReadPosRankSum=-0.876;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr17	78263429	rs62076476	C	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=24.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	78263486	rs17853989	T	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	78263514	rs17853713	G	A	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	78264298	rs11651637	G	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	78265667	rs7503557	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	78298938	rs6565674	A	G	5320.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	78302157	rs8082521	C	A	4984.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.32;ReadPosRankSum=1.025;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:2,203:0.99:205
chr17	78305871	rs10782008	G	A	10235.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr17	78306102	rs9913636	G	C	9245.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr17	78306280	rs8074015	A	G	7653.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	78306308	rs9908287	C	G	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	78308136	rs11658902	G	A	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	78311508	rs4890009	G	A	10904.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr17	78319136	rs9674961	G	A	10765.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,421:1.00:421
chr17	78319380	rs4890012	G	C	7460.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr17	78323445	rs35993981	T	A	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	78323493	rs201549978	A	C	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	78323757	rs7223115	T	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	78324048	rs9944443	T	A	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	78327358	rs7216493	G	A	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	78332396	rs9915562	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	78333840	rs8067292	T	C	9280.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr17	78348494	rs6565681	A	G	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	78354661	rs4889848	C	T	18722.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,732:1.00:732
chr17	78362300	rs6565683	A	T	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	78395734	rs34933300	G	A	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	78396091	rs9907097	C	G	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	78401588	rs8065290	G	T	8620.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	78404175	rs113730607	ATTTG	A	6550.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=43.67;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	78444658	rs12943620	T	G	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	78444679	rs28364735	T	C	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	78445702	rs1131609	A	G	6286.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	78449948	rs144443274	C	T	14677.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,558:1.00:558
chr17	78599562	rs17848685	C	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	78617439	rs6565469	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	78681590	rs2306690	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	78765219	rs4969429	A	G	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	78820212	rs3829572	G	A	7472.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	78820329	rs3751945	C	T	16146.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,636:1.00:636
chr17	78896529	rs2271603	C	T	49235.77	.	AC=2;AF=1.00;AN=2;DB;DP=1907;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,1892:1.00:1892
chr17	78897547	rs7217786	C	T	6060.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	78897561	rs6565491	C	T	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	78899123	rs144664372	G	A	8175.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr17	78921117	rs4969231	C	T	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	78969386	rs4969333	G	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	78969590	rs66738175	T	C	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	78970779	rs12951796	G	C	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	78970909	rs4969334	A	G	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	78971176	rs9989475	A	G	21338.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,484:1.00:484
chr17	78971182	rs9989472	C	T	21385.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	78971283	rs8081168	A	C	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	78972326	rs10871491	A	G	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	78972864	rs11870458	T	C	16147.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr17	78978275	rs61048303	AA	GG	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	78978654	rs7219221	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	79007075	rs11150764	C	A	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	79009153	rs8073224	T	C	3154.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.212;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.90;ReadPosRankSum=-0.608;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:1,131:0.99:132
chr17	79010533	rs4969350	G	A	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	79010839	rs6565527	A	C	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	79031773	.	ACCCCC	A,ACC	1849.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;QD=46.24;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:0,20,20:0.50,0.50:40
chr17	79031825	rs9898347	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	79077957	rs34057293	T	C	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	79077980	rs57792378	A	C	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr17	79089428	rs12450670	A	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	79093142	rs144250320	C	CCGCGTGCCCTACCTCT	6271.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=65.33;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	79093270	.	C	CGGGCGT	16729.73	.	AC=2;AF=1.00;AN=2;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=44.73;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	79093447	.	AGTCACGGGCCCAGGCCCCGCCTCCCATCAT	A	531	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=23;MQ=63.68;NF=0;NR=5;PP=531;QD=113.2;SC=CCGCTCCCACAGTCACGGGCC;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=5;WE=79093484;WS=79093437;set=Platypus	GT:AD:AF:DP	1/1:6,5:0.45:11
chr17	79094162	rs55856613	G	A	15335.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.77;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,595:1.00:595
chr17	79095144	rs8073904	G	A	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr17	79095629	rs7503604	C	A	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	79098838	rs141491493	GGCAGGGTGA	G	5568.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.65;MQRankSum=0.787;QD=25.43;ReadPosRankSum=0.387;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:2,217:0.99:219
chr17	79102193	rs66762502	TAGG	T	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	79105850	rs4969253	T	C	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	79108141	rs4969397	A	G	25886.77	.	AC=2;AF=1.00;AN=2;DB;DP=1004;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,995:1.00:995
chr17	79152798	rs9894262	G	A	7415.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	79155116	rs906180	A	G	15230.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr17	79166103	rs870187	T	C	3262.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.232;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=1.431;SOR=0.442;set=HC	GT:AD:AF:DP	1/1:1,130:0.99:131
chr17	79170882	rs202115809	G	A	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	79171805	rs7225364	C	A	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	79171967	rs2659016	A	G	5564.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	79173184	rs2659015	T	C	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	79173224	rs2725419	T	C	8045.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=-0.880;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:2,315:0.99:317
chr17	79173469	rs143673290	G	A	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	79174221	rs2466773	T	C	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr17	79180369	rs55844247	C	G	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	79180775	rs2256881	A	G	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr17	79182667	rs9896314	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	79204661	rs12937612	C	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	79213141	rs74778772	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	79220016	rs61740863	T	C	15110.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr17	79226362	rs3803767	G	A	17447.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,680:1.00:680
chr17	79227075	rs72860029	C	G	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	79244802	rs2292184	T	C	8961.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr17	79244950	rs111873357	C	T	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	79246270	rs3841622	G	GC	735.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	79249997	rs9898133	C	T	9256.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,359:1.00:359
chr17	79255912	rs7213540	C	T	7973.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr17	79258615	rs80261071	G	A	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	79258787	rs8077394	A	G	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	79268562	rs8064597	A	G	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	79278357	rs11871509	C	G	10558.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	79279017	rs2056439	C	G	12010.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	79279019	rs3215153	G	GC	7503.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr17	79288124	rs9891595	C	T	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr17	79288337	rs78567895	C	G	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	79372928	.	A	AGT,AGTGT	3732.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=128;set=Intersection	GT:AF:DP	1/2:0.24,0.67:123
chr17	79373203	rs182760976	C	A	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	79384819	rs4969436	A	G	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	79385044	rs56931525	C	T	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	79385314	.	GCCTT	G	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.10;MQRankSum=1.017;QD=15.80;ReadPosRankSum=1.898;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr17	79389251	rs9897258	C	T	7212.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	79389486	rs11870740	G	A	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	79390260	rs151241907	G	GGT,GGTGT	4065.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.65;MQRankSum=-0.363;QD=36.30;ReadPosRankSum=-1.419;SOR=0.821;set=HC	GT:AD:AF:DP	1/2:5,16,91:0.14,0.81:112
chr17	79390298	.	T	TGCGTGTGCGCGTGTGTGTCCATGAAAATGGGTGTGTGCATGTGTATGTCCATGAGGATGGGTGTGTGC	10103.73	.	AC=2;AF=1.00;AN=2;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.07;QD=44.31;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	79390370	rs36169187	CGT	C	22752.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=-0.082;QD=36.35;ReadPosRankSum=-0.710;SOR=0.466;set=HC	GT:AD:AF:DP	1/1:3,623:1.00:626
chr17	79395814	rs34098647	A	AT	2344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.393;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=13.10;ReadPosRankSum=-0.352;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:39,140:0.78:179
chr17	79409309	rs12938890	A	G	5840.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	79409434	rs12939225	A	G	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	79411512	rs187826058	C	A	13075.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr17	79414307	rs7213444	A	G	19869.77	.	AC=2;AF=1.00;AN=2;DB;DP=755;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,740:1.00:740
chr17	79414914	rs10871497	A	G	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	79418260	rs6565571	A	G	4245.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=-0.573;SOR=0.411;set=HC	GT:AD:AF:DP	1/1:1,163:0.99:164
chr17	79418770	rs61746096	C	T	12482.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr17	79418983	rs34593866	G	GC	16006.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.63;ReadPosRankSum=0.889;SOR=0.509;set=HC	GT:AD:AF:DP	1/1:16,585:0.97:601
chr17	79424516	rs12601317	A	G	6699.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	79425141	rs78579961	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	79426481	rs4969273	A	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	79427822	rs3744148	C	T	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	79429711	rs3736072	C	T	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	79478019	rs1139405	G	A	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	79478916	rs9910792	G	T	8200.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	79479469	rs8064532	A	C	18672.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.184;set=HC	GT:AD:AF:DP	1/1:0,707:1.00:707
chr17	79495519	rs2075720	C	T	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	79497036	rs12937453	C	A	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	79504073	rs143561119	C	T	6027.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	79508400	rs14422	T	C	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	79508506	rs2228698	G	T	4355.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	79512647	rs79372565	C	T	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	79512944	rs140093334	TC	T	4426.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.20;SOR=1.629;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	79513892	rs202032434	A	AG	3427.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.81;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	79515124	rs62076030	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	79517183	rs80125356	CA	TG	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	79526402	rs4073997	G	C	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	79530967	rs62073395	T	G	5750.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.00;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	79532654	rs3934711	G	A	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	79539213	rs117824378	T	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	79564304	rs62074671	G	T	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr17	79573884	rs62074677	T	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	79580173	rs6565601	C	T	243.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	79589052	rs75305572	C	T	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	79589242	rs6565604	G	A	3651.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.100;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=0.521;SOR=0.311;set=HC	GT:AD:AF:DP	1/1:1,146:0.99:147
chr17	79589359	rs6565605	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	79596811	rs9894429	C	T	13158.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,510:1.00:510
chr17	79603831	rs9895741	A	G	2854.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.61;ReadPosRankSum=-1.268;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:2,114:0.98:116
chr17	79604264	rs62074750	T	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	79612397	rs6420484	A	G	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:2,293:0.99:295
chr17	79614932	rs34872037	TTAAC	T	9906.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:2,397:0.99:399
chr17	79615225	rs7406494	G	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	79618270	rs8074225	G	A	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	79634774	rs61742303	A	T	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	79634813	rs11546632	T	C	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	79637349	rs10438817	T	C	10340.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr17	79637367	rs7226091	C	G	10076.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	79637565	rs7215601	T	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	79637637	rs7209877	G	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	79638805	rs11150805	C	T	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	79639198	rs7502870	C	T	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	79649304	rs3205137	A	G	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	79650181	rs34815730	A	G	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	79650675	rs8080624	C	G	22572.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.513;ClippingRankSum=0.000;DB;DP=876;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.49;ReadPosRankSum=1.571;SOR=0.506;set=HC	GT:AD:AF:DP	1/1:1,851:1.00:852
chr17	79650828	rs8066889	T	G	10928.77	.	AC=2;AF=1.00;AN=2;DB;DP=814;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.38;SOR=4.679;set=HC	GT:AD:AF:DP	1/1:1,759:1.00:760
chr17	79657136	rs8074828	G	C	5208.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	79663931	rs8070488	T	C	17406.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr17	79667397	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.126;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=8.367;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.583;QD=1.07;ReadPosRankSum=0.131;SOR=1.956;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr17	79668226	rs55837949	A	G	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	79670386	rs1132803	A	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	79682051	rs3204270	C	T	7412.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr17	79682558	rs2072700	T	C	17278.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.952;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=-1.237;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:1,674:1.00:675
chr17	79682650	rs8071492	G	A	9979.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	79683698	rs62077217	T	C	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	79683997	rs140229959	T	TGCCTCACCCCTG	16720.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.24;MQRankSum=-0.318;QD=33.64;ReadPosRankSum=-0.187;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:2,495:1.00:497
chr17	79687218	rs11150813	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	79784101	rs374374934	GCA	G	910.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=744;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=5.741;QD=1.38;ReadPosRankSum=-0.315;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:557,104:0.16:661
chr17	79802025	.	C	T	1476.77	.	AC=2;AF=1.00;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	79816926	rs1533756	C	T	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	79862882	rs146889521	C	G	10773.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr17	79872129	rs1879568	A	G	22523.77	.	AC=2;AF=1.00;AN=2;DB;DP=870;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,853:1.00:853
chr17	79872241	rs1879569	A	G	26638.77	.	AC=2;AF=1.00;AN=2;DB;DP=1053;set=Intersection	GT:AD:AF:DP	1/1:1,1033:1.00:1034
chr17	79891147	rs61747618	T	C	8738.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.521;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=1.500;SOR=0.310;set=HC	GT:AD:AF:DP	1/1:1,340:1.00:341
chr17	79893962	rs34419046	G	A	16107.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr17	79894106	.	A	AT,ATT	4072.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=2.748;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.467;QD=13.01;ReadPosRankSum=3.355;SOR=0.923;set=HC	GT:AD:AF:DP	1/2:59,194,60:0.62,0.19:313
chr17	79911164	rs78951919	A	AG	1110.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=30.02;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	79912103	rs4796851	C	T	10809.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr17	79914661	rs35872546	T	C	20479.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=793;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.025;QD=26.39;ReadPosRankSum=1.381;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:2,774:1.00:776
chr17	79915629	rs36023555	A	G	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.396;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	79915647	rs35069988	A	G	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	79915863	rs34107062	A	G	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.993;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	79935636	rs9906594	C	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	79954544	rs8074498	T	A	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	79967461	.	G	GGGGGCGACTGAGGCACAGCTCTGACGGGGCCCCCCTGAGGTCTACGGATGGGACGTA	2026.73	.	AC=2;AF=1.00;AN=2;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.74;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	79967791	.	CTTTT	C	727.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	79972901	rs9895872	C	T	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	79974731	rs13087	T	C	7502.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	79977813	rs4969471	C	G	11174.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	79980756	rs3934983	C	A	15981.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.017;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.55;ReadPosRankSum=-1.448;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,601:1.00:602
chr17	79980891	rs4444402	C	T	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	79989546	rs190408119	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	79990972	rs10708637	CG	C	2151.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	80000798	rs140905889	GAC	G	616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=786;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.002;QD=0.93;ReadPosRankSum=1.153;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:578,83:0.13:661
chr17	80008676	rs4464142	A	C	8220.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr17	80013235	rs4969464	A	G	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	80037560	.	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.486;QD=0.32;ReadPosRankSum=0.521;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:95,18:0.16:113
chr17	80038952	rs4246444	T	G	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	80039028	rs4246445	A	G	8344.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	80039481	rs1140616	G	A	7323.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	80039801	.	G	A	1063	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=2;MGOF=31;MMLQ=27;MQ=58.71;NF=23;NR=4;PP=1063;QD=40.6581930573;SC=GGGTGGGCAGGGCTGCGGGGA;SbPval=0.95;Source=Platypus;TC=38;TCF=27;TCR=11;TR=27;WE=80039826;WS=80039793;set=Platypus	GT:AD:AF:DP	1/0:11,27:0.71:38
chr17	80039810	.	GAGA	G	2235	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=3;HapScore=2;MGOF=31;MMLQ=23;MQ=60.44;NF=25;NR=6;PP=2235;QD=73.1935483871;SC=GGGCTGCGGGGAGAAGGTGGG;SbPval=0.78;Source=Platypus;TC=36;TCF=27;TCR=9;TR=31;WE=80039826;WS=80039793;set=Platypus	GT:AD:AF:DP	1/0:5,31:0.86:36
chr17	80039818	.	G	C	1697	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=4;HapScore=2;MGOF=31;MMLQ=23;MQ=60.21;NF=32;NR=5;PP=1697;QD=46.8046273661;SC=GGGAGAAGGTGGGGGTGGGGA;SbPval=0.93;Source=Platypus;TC=42;TCF=32;TCR=10;TR=37;WE=80039826;WS=80039793;set=Platypus	GT:AD:AF:DP	1/0:5,37:0.88:42
chr17	80040607	rs4969465	T	C	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	80043349	rs17848939	C	T	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	80043739	rs2229422	A	G	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	80050272	rs17848925	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	80050554	.	CGGG	C,CG	1296.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;QD=35.05;SOR=2.242;set=HC	GT:AD:AF:DP	1/2:0,13,24:0.35,0.65:37
chr17	80051183	rs2228309	A	G	10125.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:2,404:1.00:406
chr17	80053166	rs45555535	C	T	16424.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr17	80054375	rs17848934	C	A	11140.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:1,427:1.00:428
chr17	80059596	rs13949	T	C	6579.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	80059758	rs7225637	G	A	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	80059846	.	C	A	294.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr17	80065244	rs112663677	C	CGGGAGTG	1476.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	80071244	rs7211808	T	C	9024.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr17	80085283	rs73360060	C	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	80085295	rs74001545	C	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	80085326	rs62078305	G	A	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=45.04;SOR=1.141;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	80085341	rs62078306	A	G	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=37.95;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	80085633	rs11077969	A	G	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr17	80085703	rs7213172	G	T	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:2,205:0.99:207
chr17	80086386	rs7406162	C	T	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.14;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	80086389	rs7406163	C	T	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.49;SOR=1.453;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	80086395	rs4625783	T	C	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.62;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	80086597	rs4459614	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	80092131	rs4789753	T	C	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	80092171	rs4789752	A	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	80103631	rs35131420	T	C	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	80195582	rs9303026	T	C	16315.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr17	80198007	rs9901910	G	C	9052.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr17	80218800	rs35693344	G	A	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	80275253	rs3176829	T	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	80280865	rs11077986	G	A	31850.77	.	AC=2;AF=1.00;AN=2;DB;DP=850;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.14;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,835:1.00:835
chr17	80280890	rs62079492	G	A	24615.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,540:1.00:540
chr17	80356315	rs6502107	A	G	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	80394526	.	G	C	10679.77	.	AC=2;AF=1.00;AN=2;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr17	80404555	rs72857481	G	A	16067.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,610:1.00:610
chr17	80430359	.	C	CA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.338;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:87,26:0.23:113
chr17	80441195	.	C	CA	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=3.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.056;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:130,36:0.22:166
chr17	80517489	rs72861098	G	C	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	80521092	rs4789795	A	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	80525802	rs375810303	CT	C	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=7.463;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.713;QD=5.43;ReadPosRankSum=0.758;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr17	80529849	.	G	C	909.77	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	80540585	rs2306759	A	G	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	80544855	rs1387545	T	C	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	80545156	rs6502124	A	G	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr17	80559167	rs3794716	G	A	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	80574082	rs753569	T	G	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.53;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	80574615	rs74962425	G	C	1976.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.204;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=15.881;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.83;ReadPosRankSum=-1.140;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:4,101:0.96:105
chr17	80601769	rs59318270	TA	T	5338.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.36;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	80606079	rs9789075	G	A	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.77;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	80618760	rs79808127	C	T	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	80619080	rs4789706	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	80626210	rs7221877	T	C	12848.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.690;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=-0.522;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:1,516:1.00:517
chr17	80674643	rs2250000	C	G	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	80676946	rs111661651	A	ACCACCCC	2457.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=43.12;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	80684245	rs7406285	C	G	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	80684638	rs2246103	T	C	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	80685126	rs2243446	T	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	80693705	rs2256322	A	G	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	80696410	rs2253149	A	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	80696542	rs2253132	G	A	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	80700592	rs1994554	T	C	7120.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	80700712	rs1994553	T	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	80730527	rs615630	T	C	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr17	80755615	rs36020328	C	CT	574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.757;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:8,37:0.82:45
chr17	80755807	.	C	CT	118	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=10;HapScore=2;MGOF=101;MMLQ=23;MQ=60.0;NF=3;NR=5;PP=118;QD=16.875;SC=CACTATCGTTCTTTTTTTTGT;SbPval=0.32;Source=Platypus;TC=12;TCF=3;TCR=9;TR=8;WE=80755815;WS=80755797;set=Platypus	GT:AD:AF:DP	0/1:4,8:0.67:12
chr17	80763983	rs582192	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	80765322	rs668990	C	A	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	80786008	rs6502134	G	A	49942.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=2330;ExcessHet=3.0103;FS=1.602;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=0.797;QD=21.57;ReadPosRankSum=22.272;SOR=0.560;set=HC	GT:AD:AF:DP	1/1:345,1970:0.85:2315
chr17	80786427	rs11364632	GC	G	50982.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=2089;ExcessHet=3.0103;FS=1.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=6.868;QD=27.54;ReadPosRankSum=18.530;SOR=0.674;set=HC	GT:AD:AF:DP	1/1:144,1707:0.92:1851
chr17	80786627	rs34655768	GCA	G	9873.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	80788465	rs12938126	T	C	17052.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,669:1.00:669
chr17	80788492	rs12948179	A	G	14511.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr17	80790442	rs3744165	T	G	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	80827955	rs7222931	A	G	2792.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	80863857	rs2292971	T	C	8153.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:2,327:0.99:329
chr17	80865526	rs2085616	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	80865866	rs879715	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	80866427	rs8073910	G	T	166.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	80867281	rs2271916	C	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	80867333	rs2271915	C	T	141.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	80878389	rs1471197	A	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	80878412	rs5822547	C	CT,CTT	568.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-1.176;SOR=0.346;set=HC	GT:AD:AF:DP	1/2:5,17,13:0.49,0.37:35
chr17	80887244	rs1127986	T	C	25490.77	.	AC=2;AF=1.00;AN=2;DB;DP=1000;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,982:1.00:982
chr17	80887451	rs2034962	A	G	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr17	80890638	rs898095	T	C	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	80895745	rs3785520	T	C	14409.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:1,568:1.00:569
chr17	80895769	rs3785521	A	G	16003.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr17	80895933	rs3785522	A	G	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	80897215	rs3744156	C	T	10694.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:2,404:1.00:406
chr17	80899281	rs9390	G	A	16349.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr17	80904844	rs7225887	C	T	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	80914988	rs1001865	G	T	5625.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	80923432	rs7217917	T	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	81006286	rs10852789	G	A	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	81006387	rs1143006	G	A	14837.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr17	81009487	rs73360407	C	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	81043039	rs9908756	A	G	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:1,298:1.00:299
chr17	81050833	rs74775917	A	AG	17954.73	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr17	81050982	rs7501742	G	C	18172.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr17	81051007	rs7502442	G	T	13558.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	81051887	rs7223467	T	G	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	81052423	rs8269	G	A	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	81083419	rs28399067	G	A	2937.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.431;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.763;MLEAC=2;MLEAF=1.000;MQ=58.89;MQRankSum=2.499;QD=22.95;ReadPosRankSum=0.071;SOR=0.540;set=HC	GT:AD:AF:DP	1/1:4,124:0.97:128
chr18	196829	rs655781	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=0.219;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr18	197741	rs35489764	AT	A	41.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr18	203081	rs471274	A	C	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:98,92:0.48:190
chr18	204780	rs61607000	A	G	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.206;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr18	204815	rs56806027	T	A	194.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.521;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr18	204816	rs4039610	T	TAAAAA	185.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=1.178;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr18	224184	rs631343	C	G	1819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=-0.950;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:100,96:0.49:196
chr18	252559	rs657138	G	A	10765.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr18	260140	rs72856275	T	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.68;ReadPosRankSum=0.366;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr18	319935	rs12190	T	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr18	331827	rs9947291	C	T	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:40,68:0.63:108
chr18	334742	rs2305027	C	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr18	334758	rs2305026	T	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	334994	rs2305025	A	G	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:94,92:0.49:186
chr18	335099	rs8098850	T	C	3651.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:218,191:0.47:409
chr18	335266	rs7232394	C	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:97,74:0.43:171
chr18	335363	rs7232553	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr18	618124	rs518471	T	C	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr18	619050	rs546696	G	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	624783	rs495688	A	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	624824	rs495799	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	625070	rs498466	G	A	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	645176	rs565034	C	A	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	649759	rs1058151	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr18	649879	.	C	CTT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.296;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr18	658064	rs2853533	G	C	6674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-1.120;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:421,343:0.45:764
chr18	658332	rs72634355	C	T	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,69:0.51:135
chr18	662103	rs1001761	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=2.386;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr18	662370	rs2612095	T	C	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.428;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=2.108;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chr18	672836	rs1059393	A	G	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr18	674535	rs2847172	T	C	1382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.222;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:67,71:0.51:138
chr18	678847	rs2606246	T	C	1698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.137;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:84,90:0.52:174
chr18	678947	rs2741186	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr18	683094	rs2741183	C	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr18	683116	rs2741182	C	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr18	685797	rs2847329	C	T	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr18	688428	rs2847152	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr18	688463	rs2612088	G	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=0.405;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:12,27:0.69:39
chr18	690436	rs2847614	C	T	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=-1.060;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:40,45:0.53:85
chr18	691173	rs2612087	G	A	2946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.089;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:205,164:0.44:369
chr18	691266	rs2612086	A	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:77,58:0.43:135
chr18	693269	rs2612083	A	C	5897.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:221,178:0.45:399
chr18	693285	rs2606248	A	T	5329.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:160,138:0.46:298
chr18	693767	rs2612082	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr18	693828	rs2305996	A	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr18	693986	rs3217714	GCT	G	6023.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.59;ReadPosRankSum=1.359;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:168,156:0.48:324
chr18	694206	rs2847602	A	G	3643.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:142,172:0.55:314
chr18	697377	rs34911737	CTT	C	5885.73	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:143,155:0.52:298
chr18	706322	rs3831414	C	CACTG	432.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr18	706589	rs2612102	A	G	2447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=0.372;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:147,128:0.47:275
chr18	712319	rs34015520	TCGG	T	830.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.201;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.737;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.880;QD=12.98;ReadPosRankSum=1.786;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:41,23:0.36:64
chr18	712356	rs3786350	G	T	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.571;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-0.989;QD=10.01;ReadPosRankSum=0.605;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:56,24:0.30:80
chr18	724612	rs537141	A	G	7655.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr18	724650	rs200917511	A	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:106,84:0.44:190
chr18	739918	.	AT	A	29	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=8;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=1;NR=1;PP=29;QD=23.0;SC=TTAGCTTTTCATTTTTTTTAA;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=739926;WS=739908;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	742858	rs9961743	C	T	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	743226	rs3786347	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	743436	rs3786348	T	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	751880	rs34440107	C	CA	515.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.726;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:6,31:0.84:37
chr18	904766	rs2231181	G	C	13605.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,555:1.00:555
chr18	905537	rs2231183	T	C	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr18	907675	rs8192597	G	A	5400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=0.499;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:205,270:0.57:475
chr18	907710	rs2856966	A	G	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-1.721;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:206,137:0.40:343
chr18	2539016	rs8084295	C	G	10742.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr18	2544356	rs2176451	T	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr18	2547500	rs2677879	G	T	6657.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr18	2564005	rs9965478	A	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr18	2585077	rs6506019	G	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=0.135;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr18	2606596	rs4035305	CTT	C	751.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr18	2610978	rs3817350	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr18	2656248	rs2430853	G	C	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:162,92:0.36:254
chr18	2674159	.	C	CT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=2.116;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:51,20:0.28:71
chr18	2688798	rs637651	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	2698125	rs626994	T	C	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	2705615	rs62084217	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.35;ReadPosRankSum=0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr18	2705633	rs8090967	T	A	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.97;ReadPosRankSum=0.876;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr18	2705700	rs635132	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	2707619	rs2276092	G	A	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr18	2718265	rs62084229	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr18	2724930	rs633422	A	T	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.674;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:44,43:0.49:87
chr18	2728686	rs10502304	T	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr18	2729177	rs17627559	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=1.898;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr18	2738352	rs10638660	T	TAGAC	799.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr18	2738580	rs8094260	C	T	2554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.636;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=4.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.339;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:142,129:0.48:271
chr18	2740625	rs521992	G	A	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr18	2740714	rs12327477	A	G	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=0.312;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:32,28:0.47:60
chr18	2750477	rs2304859	A	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr18	2751475	rs300293	A	G	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	2763697	rs483547	C	T	2830.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:207,156:0.43:363
chr18	2771516	rs300291	G	T	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	2771643	rs3214732	A	AT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.296;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr18	2777923	rs3213926	A	G	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.203;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:55,31:0.36:86
chr18	2778382	rs17552342	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	2795852	rs2298498	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr18	2847361	rs112881773	C	G	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-2.428;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr18	2847730	rs2289687	C	G	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	2847744	rs2289686	C	T	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:81,52:0.39:133
chr18	2909831	rs607411	C	G	3309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-1.146;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:238,178:0.43:416
chr18	2920288	rs3745012	G	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr18	2921444	rs2282635	T	C	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.808;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:69,65:0.49:134
chr18	2934536	rs3765622	G	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr18	2937646	rs3826637	A	G	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:92,69:0.43:161
chr18	2946291	rs643507	C	T	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr18	2951447	rs10570659	TA	T	83.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=9.32;ReadPosRankSum=0.431;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr18	2954439	rs7226624	C	T	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr18	2982817	rs1539792	C	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	3075503	rs10667835	C	CAAA	13533.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=44.67;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr18	3085191	rs148266515	AT	A	694.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr18	3089522	rs948298	G	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	3094377	rs36091956	GA	G	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=1.474;QD=7.90;ReadPosRankSum=-0.669;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr18	3100429	rs7232329	G	A	3715.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:157,179:0.53:336
chr18	3112231	rs8096379	G	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	3112568	rs8097874	C	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr18	3120060	rs6506068	G	A	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	3126811	rs1071600	A	G	6216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.005;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:337,316:0.48:653
chr18	3129131	rs8089599	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	3131593	.	C	CT	21	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.4999;HP=12;HapScore=2;MGOF=0;MMLQ=24;MQ=60.54;NF=0;NR=3;PP=21;QD=11.0;SC=GAAAACAATTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=11;TCF=1;TCR=10;TR=3;WE=3131601;WS=3131583;set=Platypus	GT:AD:AF:DP	0/1:8,3:0.27:11
chr18	3134610	rs17177458	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr18	3134953	.	A	ATT	72	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5062;HP=11;HapScore=2;MGOF=6;MMLQ=23;MQ=60.51;NF=0;NR=7;PP=72;QD=11.5714285714;SC=TTATTTTACGATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=7;WE=3134961;WS=3134943;set=Platypus	GT:AD:AF:DP	0/1:4,7:0.64:11
chr18	3164385	rs11659820	C	T	1984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-1.571;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:139,107:0.43:246
chr18	3176040	rs8099021	C	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.101;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:101,44:0.30:145
chr18	3188664	rs144550875	TAC	T	3624.73	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:72,147:0.67:219
chr18	3215230	rs1662315	C	T	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:92,93:0.50:185
chr18	3253543	rs1791105	G	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	3253569	rs6417016	C	T	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	3272744	rs7242012	A	G	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	3272798	rs6506097	AG	TA	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	3272855	rs6506099	C	T	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr18	3272874	rs7407072	T	A	7205.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr18	3273153	rs7407045	C	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	3277466	rs6506100	TG	CA	14946.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.48;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr18	3277691	rs6506102	A	T	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	3456679	rs138089161	GAC	G	2212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.30;ReadPosRankSum=0.596;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:49,60:0.55:109
chr18	3534175	rs2072389	G	A	4376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=1.894;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:301,229:0.43:530
chr18	3534224	rs35822832	C	T	7869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=1027;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=-0.085;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:591,429:0.42:1020
chr18	3581966	rs56017170	G	A	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:173,190:0.52:363
chr18	3742572	rs3745050	C	G	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=0.399;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:69,58:0.46:127
chr18	3814361	.	AT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=0.99;ReadPosRankSum=2.289;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr18	5196992	rs292286	T	C	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr18	5292030	rs620652	A	G	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:109,92:0.46:201
chr18	5292207	rs11327444	CA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.447;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.14;ReadPosRankSum=0.788;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr18	5407839	rs2874686	C	T	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr18	5407911	rs2322093	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	5410574	rs3817466	A	G	9640.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr18	5420021	rs3752061	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	5423631	rs12607210	A	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	5433570	rs2272130	A	C	11606.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr18	5433722	rs3931700	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	5437961	rs5822861	T	TC	11469.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr18	5437967	rs2322094	C	T	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:163,157:0.49:320
chr18	5577258	rs11876037	T	C	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	5630531	rs4083186	G	A	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	5630676	rs56114101	G	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	5891637	rs28656885	C	A	3801.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:213,191:0.47:404
chr18	5956238	rs3737353	C	T	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	5956425	rs3737354	C	T	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=25.58;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr18	5956483	rs3737357	G	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	5956502	rs34472471	GCT	G	2183.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	5960012	.	T	TATATATATAC	547.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.31;QD=45.64;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	5960026	.	T	TAC	862.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.40;QD=53.92;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	5960038	.	C	CATATATAT	1087.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.85;QD=47.29;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	5960040	rs199658556	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.46;QD=43.87;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	5960042	.	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.46;QD=49.27;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	5960048	rs368307522	T	C	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.26;QD=50.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	5960060	rs10658145	C	CGT	1685.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.89;MQRankSum=0.916;QD=33.71;ReadPosRankSum=-1.718;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:3,47:0.94:50
chr18	5960165	rs505559	G	A	9494.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.32;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr18	6032384	rs150758288	T	TACAC	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.93;ReadPosRankSum=-2.076;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr18	6046717	rs7234770	T	C	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:92,101:0.52:193
chr18	6511473	rs4798453	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr18	6511669	rs4798454	T	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	6513750	rs7242507	G	A	2071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-0.405;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:111,111:0.50:222
chr18	6588929	rs8094425	A	T	2137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.930;QD=9.02;ReadPosRankSum=0.960;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:126,111:0.47:237
chr18	6837446	rs2303977	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,58:0.45:129
chr18	6851267	rs8087719	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr18	6870524	rs62082833	T	C	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr18	6873354	rs2282522	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.18;ReadPosRankSum=-0.674;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr18	6889973	rs4239328	A	G	4438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.409;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=1.124;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:254,228:0.47:482
chr18	6890434	rs1116757	A	G	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:137,116:0.46:253
chr18	6890591	rs1116756	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr18	6896450	rs11081282	C	T	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:103,94:0.48:197
chr18	6898415	rs12185460	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr18	6912004	rs1346931	G	A	13483.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr18	6912143	rs1056408	A	C	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	6927348	rs2282629	G	A	4175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=19.07;ReadPosRankSum=-0.572;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:112,107:0.49:219
chr18	6927352	rs2282630	TG	CA	4346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.487;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=18.58;ReadPosRankSum=-0.258;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:121,113:0.48:234
chr18	6928138	rs4798516	A	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=2.189;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,46:0.51:91
chr18	6928180	rs4797265	G	T	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr18	6928257	rs4798517	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr18	6928291	rs4797266	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr18	6928338	rs4798518	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr18	6928422	rs4797267	C	T	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:127,89:0.41:216
chr18	6928547	rs4797268	T	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr18	6942295	rs733918	T	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	6947013	rs489023	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	6947143	rs2155697	A	C	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr18	6947362	rs12966847	C	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	6948614	rs62081479	A	G	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	6948629	rs3840904	TTCA	T	2212.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	6949052	rs500355	A	G	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr18	6950999	rs62081480	A	G	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	6951060	rs17439137	G	A	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	6956393	rs11875257	T	C	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	6980457	rs693360	T	C	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	6980487	rs74938552	C	T	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=-1.312;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:73,53:0.42:126
chr18	6980523	rs607230	T	C	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-1.643;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:52,63:0.55:115
chr18	6982443	rs538815	C	T	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=0.852;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:101,66:0.40:167
chr18	6985506	rs616722	T	C	10017.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.52;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr18	6985506	.	TG	CA,CG	1119	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.6;FR=0.5000,0.5000;HP=1;HapScore=2;MMLQ=26;MQ=60.0;NF=50,89;NR=37,60;SC=GTACTGTGGCTGTGCTGAGAT;SbPval=0.4;Source=Platypus;TC=150;TCF=90;TCR=60;TR=87,149;WE=6985515;WS=6985496;set=Platypus	GT:AF:DP	0/1:0.58:150
chr18	6985507	rs523711	G	A	2874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.497;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.212;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:143,145:0.50:288
chr18	6985631	rs617206	C	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr18	6985655	rs617573	C	T	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	6986050	rs59480422	C	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr18	6986227	rs12607841	G	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:103,84:0.45:187
chr18	6992509	rs7243349	C	T	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=0.587;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:104,86:0.45:190
chr18	6995512	rs4798524	G	A	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.682;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr18	6999315	rs525394	A	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr18	6999368	rs525231	C	T	3284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=3.271;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:123,88:0.42:211
chr18	6999377	rs525206	A	G	3304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=4.368;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:143,91:0.39:234
chr18	6999628	rs625106	T	C	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:113,110:0.49:223
chr18	6999694	rs693754	T	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr18	6999963	rs12970643	G	A	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:131,122:0.48:253
chr18	7002412	rs5822937	G	GA	2817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.285;QD=9.52;ReadPosRankSum=0.531;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:150,146:0.49:296
chr18	7008591	rs662471	T	C	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:141,140:0.50:281
chr18	7012123	rs9946794	A	G	2097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=1.086;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:160,112:0.41:272
chr18	7017322	rs539713	A	G	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:105,95:0.47:200
chr18	7017459	rs11420876	G	GA	534.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr18	7023371	rs684634	A	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:133,95:0.42:228
chr18	7024345	rs548577	C	T	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-0.501;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:70,75:0.52:145
chr18	7026187	rs510991	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr18	7031986	rs113133818	T	TA	275.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr18	7032221	rs7240655	A	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:116,87:0.43:203
chr18	7033037	rs621993	G	A	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:140,127:0.48:267
chr18	7033173	rs113773518	GA	G	1214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=2.385;QD=12.52;ReadPosRankSum=-1.198;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:56,41:0.42:97
chr18	7033235	rs4797278	G	A	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=2.240;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr18	7033255	rs628540	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.245;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr18	7034448	rs566825	G	A	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=0.061;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:36,44:0.55:80
chr18	7034464	rs674733	T	A	1576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=0.807;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:70,77:0.52:147
chr18	7035915	rs677136	A	C	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:98,97:0.50:195
chr18	7037866	rs647595	T	C	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	7038783	rs143672767	C	CCCG	1044.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr18	7042402	rs648161	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	7117623	rs334406	G	C	2626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.406;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:164,142:0.46:306
chr18	7117782	rs334407	A	G	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:131,113:0.46:244
chr18	7117880	rs36201812	CCCCGCCCCGT	C	915.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr18	7231038	rs138164973	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.44;ReadPosRankSum=-0.949;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr18	7567803	rs67536179	C	G	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:97,119:0.55:216
chr18	7774104	rs875530	T	C	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	7947197	rs8092781	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-1.304;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr18	8069868	rs2230601	C	T	9163.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr18	8088969	rs488952	G	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	8089027	rs658110	G	A	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	8244282	.	C	CAAA	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-0.049;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr18	8248329	rs7238476	A	G	4467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=-1.975;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:145,120:0.45:265
chr18	8248334	rs192187739	AG	GT	4321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=-1.469;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:138,110:0.44:248
chr18	8343333	rs2246146	G	A	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	8379046	rs3826631	A	G	838.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=3.815;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.26;ReadPosRankSum=-2.075;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr18	8379048	rs9789240	G	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-1.519;SOR=1.585;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr18	8379089	rs8082894	T	A	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.964;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:37,35:0.49:72
chr18	8379095	rs3819095	G	C	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.00;SOR=1.771;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	8380473	rs657374	T	A	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	8384848	rs586931	A	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.29;ReadPosRankSum=1.282;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr18	8387058	rs664201	T	G	14196.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.78;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr18	8387065	rs594742	C	T	14252.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.26;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr18	8387195	rs593978	G	A	6022.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr18	8387219	rs593950	G	C	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	8545593	rs7236554	A	G	5250.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:121,133:0.52:254
chr18	8545617	rs7234996	G	A	7184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.07;ReadPosRankSum=0.801;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:176,182:0.51:358
chr18	8545622	rs7236681	A	G	7512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.17;ReadPosRankSum=0.034;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:190,202:0.52:392
chr18	8545736	rs7236864	A	G	7667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=0.363;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:449,395:0.47:844
chr18	8545785	rs7236891	A	G	6902.77	.	AC=1;AF=0.500;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	0/1:440,361:0.45:801
chr18	8545823	rs7241117	T	C	4695.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:295,243:0.45:538
chr18	8545859	rs7237030	A	G	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:188,138:0.42:326
chr18	8720368	rs73939505	C	T	4050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=0.423;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:218,212:0.49:430
chr18	8783835	rs35739383	T	C	8842.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr18	8784370	rs918272	A	G	14691.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr18	8786117	.	C	CCCA,CCCCA	10687.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.23;QD=40.18;SOR=0.983;set=HC	GT:AD:AF:DP	1/2:0,95,171:0.36,0.64:266
chr18	8793236	rs556991	T	C	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr18	8796551	rs540278	T	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-2.983;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr18	8806815	rs11877424	A	G	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:69,77:0.53:146
chr18	8809418	rs10583994	TCA	T	2897.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:125,91:0.42:216
chr18	8809445	rs632423	G	C	7011.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr18	8821301	rs656602	T	C	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-1.508;SOR=1.356;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr18	8821556	rs629142	G	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.28;ReadPosRankSum=-2.638;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr18	8824590	rs610915	C	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr18	8825192	rs581894	A	G	11552.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:2,421:1.00:423
chr18	8826083	rs3744977	G	C	9529.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr18	8826336	rs117863598	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr18	9105108	rs1396740	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	9117867	rs906807	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	9134019	rs189486118	A	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=-1.445;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr18	9182329	rs149819427	T	TA	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	9182331	.	A	AACTTCAGGTAGGT	673	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=0.9999;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=1;NR=1;PP=673;QD=386.5;SC=GTGGTGCGTAACCTATTGTAT;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=9182340;WS=9182321;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	9182332	rs60039834	C	CTTCAGGTAGGTT	321.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.96;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	9255982	rs4798791	A	G	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	9512985	rs1813100	G	A	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:137,141:0.51:278
chr18	9522606	rs329007	G	A	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:93,108:0.54:201
chr18	9553179	rs403093	A	G	188.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr18	9553481	rs407530	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr18	9570320	rs329003	T	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr18	9577352	rs329000	C	T	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	9708582	rs62078920	C	T	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	9775372	rs6506697	A	G	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:54,70:0.56:124
chr18	9775411	rs6506698	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr18	9859134	rs10695443	A	AAATATT	987.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr18	9886567	rs62078799	T	G	2616.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.41;SOR=2.326;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	9886568	rs112324257	TTATG	T	2607.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=25.32;SOR=2.326;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	9887394	rs2240910	C	T	29224.77	.	AC=2;AF=1.00;AN=2;DB;DP=1168;set=Intersection	GT:AD:AF:DP	1/1:12,1142:0.99:1154
chr18	9887497	rs11081510	G	A	38657.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=5.156;ClippingRankSum=0.000;DB;DP=1270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;MQRankSum=-0.628;QD=31.13;ReadPosRankSum=0.788;SOR=0.419;set=HC	GT:AD:AF:DP	1/1:10,1232:0.99:1242
chr18	9887546	rs2240906	G	A	12227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=1371;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.663;QD=9.07;ReadPosRankSum=1.591;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:704,644:0.48:1348
chr18	9887936	rs17805544	G	C	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:242,158:0.40:400
chr18	9888069	rs2240905	A	G	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr18	9944956	rs29133	T	C	3365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.496;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.017;QD=18.80;ReadPosRankSum=-1.038;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:90,89:0.50:179
chr18	9944960	rs29132	A	G	3344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.006;QD=18.90;ReadPosRankSum=-2.221;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:88,89:0.50:177
chr18	9945081	rs71849777	TAGG	T	1813.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr18	9954233	rs151289099	C	CT	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-1.626;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:35,27:0.44:62
chr18	10454960	rs28769876	C	G	10727.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr18	10455077	rs28379930	A	G	5701.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr18	10455133	rs28484275	C	T	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	10485357	rs489837	T	C	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-1.884;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:63,33:0.34:96
chr18	10485363	rs91958	T	C	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-1.754;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:70,38:0.35:108
chr18	10485369	rs91959	G	A	1616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=-2.753;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:77,51:0.40:128
chr18	10487918	rs3185480	C	T	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:186,170:0.48:356
chr18	10488091	rs1045584	G	T	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=1.765;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr18	10526187	rs2290279	A	G	1864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=0.381;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:97,97:0.50:194
chr18	10526263	rs12962879	C	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr18	10530664	rs71169932	CT	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.961;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr18	10530928	rs509370	T	C	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr18	10539739	rs640832	A	G	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:86,52:0.38:138
chr18	10540223	rs11664051	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr18	10540299	rs17546495	A	G	2346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.038;QD=9.66;ReadPosRankSum=-0.053;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:127,116:0.48:243
chr18	10540432	rs510110	A	C	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:99,103:0.51:202
chr18	10677880	rs5823112	GA	G	236.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr18	10680104	rs1944383	C	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	10680132	rs688237	C	T	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.44;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	10680142	rs688222	T	A	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.35;SOR=2.608;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	10680163	rs487037	G	A	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	10698010	rs6146217	C	CGGATGCATTTGTGAACAATTACTGA	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=1.186;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr18	10714735	rs77481110	T	G	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:126,84:0.40:210
chr18	10715851	rs28712767	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr18	10741011	rs5024299	G	A	2269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.963;QD=9.34;ReadPosRankSum=-0.792;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:125,118:0.49:243
chr18	10743986	rs7233917	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr18	10744108	rs8093389	G	A	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:151,131:0.46:282
chr18	10748603	rs8096037	A	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:89,60:0.40:149
chr18	10752666	rs7234309	C	T	4522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-0.975;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:231,230:0.50:461
chr18	10758023	rs7407105	G	A	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:118,94:0.44:212
chr18	10759840	rs35033671	C	A	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:113,121:0.52:234
chr18	10759935	rs2865119	A	G	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:75,67:0.47:142
chr18	10759961	rs2865118	G	A	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,48:0.49:97
chr18	10762418	rs8095476	G	A	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:141,108:0.43:249
chr18	10762962	rs7241380	G	A	1988.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:161,109:0.40:270
chr18	10763007	rs7227167	T	C	2845.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:194,155:0.44:349
chr18	10763218	rs2865131	T	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	10784733	rs3830641	GA	G	151.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr18	10785070	rs12604151	A	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr18	10787047	rs6505592	G	A	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=1.441;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:69,49:0.42:118
chr18	10787199	rs11468237	GAA	G	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr18	10789014	rs2870106	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr18	10795041	rs6505594	A	G	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,68:0.59:115
chr18	10797303	rs35610200	G	A	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-2.259;QD=13.22;ReadPosRankSum=-0.949;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr18	10797308	rs36081769	G	A	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-2.404;QD=12.03;ReadPosRankSum=-0.038;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr18	10797338	rs145681764	T	TATC	1282.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr18	10797567	rs56112279	A	G	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:52,65:0.56:117
chr18	11609811	rs8087666	G	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:121,40:0.25:161
chr18	11609903	rs8087561	CA	GG	20238.77	.	AC=2;AF=1.00;AN=2;DB;DP=780;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,773:1.00:775
chr18	11609978	rs79858187	C	T	15035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=788;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-18.766;QD=19.11;ReadPosRankSum=0.561;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:394,393:0.50:787
chr18	11609981	rs76641843	T	C	15007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-19.030;QD=19.47;ReadPosRankSum=0.622;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:391,380:0.49:771
chr18	11609994	rs75154847	C	T	12600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-19.591;QD=19.12;ReadPosRankSum=-0.569;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:346,313:0.47:659
chr18	11610001	rs79348909	A	G	11292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-19.038;QD=18.21;ReadPosRankSum=-1.181;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:328,292:0.47:620
chr18	11610024	rs80224205	A	G	7567.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:241,191:0.44:432
chr18	11610042	rs76699910	G	A	5499.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:183,139:0.43:322
chr18	11610121	rs73943948	G	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr18	11610149	rs74706935	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr18	11619799	rs112261054	ATGT	A	10330.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr18	11689522	rs9303742	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.84;ReadPosRankSum=0.405;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr18	11689669	rs201898548	C	CGGCCCT	1901.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=61.35;MQRankSum=3.317;QD=21.13;ReadPosRankSum=0.272;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:40,50:0.56:90
chr18	11689699	rs7236433	G	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:63,77:0.55:140
chr18	11690019	rs9675415	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr18	11752943	rs1895689	C	A	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:87,104:0.54:191
chr18	11753067	rs5823172	TG	T	720.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr18	11753716	rs8095592	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr18	11754034	rs72865259	T	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr18	11824829	rs1647555	A	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr18	11824879	rs200508915	C	CT	735.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-0.675;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:66,55:0.45:121
chr18	11824880	rs1647556	T	A	2362.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.960;QD=19.21;ReadPosRankSum=0.053;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:63,60:0.49:123
chr18	11824886	rs1647557	T	G	2440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.985;QD=18.78;ReadPosRankSum=-0.515;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:65,65:0.50:130
chr18	11851480	rs16976750	C	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr18	11864707	rs4315401	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	11884670	rs643652	C	G	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,50:0.62:80
chr18	11885084	rs669222	T	C	2496.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:102,125:0.55:227
chr18	11885912	rs659485	C	A	2795.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:162,134:0.45:296
chr18	11886563	rs662515	C	G	4471.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:291,240:0.45:531
chr18	11893554	rs34932177	C	G	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:114,108:0.49:222
chr18	12012451	rs2028624	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=0.052;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr18	12012457	rs635370	A	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.51;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	12014411	rs643107	T	G	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr18	12027941	rs45446291	AT	A	1348.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr18	12057195	rs9959517	A	G	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:86,127:0.60:213
chr18	12057389	rs9959781	C	G	16327.77	.	AC=1;AF=0.500;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	0/1:385,428:0.53:813
chr18	12057403	rs9959774	A	G	16585.77	.	AC=1;AF=0.500;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	0/1:397,446:0.53:843
chr18	12057809	rs9960429	G	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr18	12067919	rs12966234	G	A	3540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=6.32;ReadPosRankSum=2.043;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:350,210:0.38:560
chr18	12068078	rs34203217	G	T	5752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-0.373;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:311,291:0.48:602
chr18	12076504	rs12966109	A	C	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=21.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	12094006	rs9964971	C	T	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	12096249	rs1986751	G	T	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	12097547	rs4796945	A	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	12099654	rs6505715	T	C	1638.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.640;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.475;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.75;ReadPosRankSum=-0.574;SOR=0.606;set=HC	GT:AD:AF:DP	1/1:1,68:0.99:69
chr18	12115002	rs9959641	A	G	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	12115310	rs8091585	C	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	12115339	rs8091463	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	12115509	rs4519391	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	12124152	rs11873244	C	G	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr18	12125657	rs7243248	G	A	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr18	12126407	rs9303759	T	A	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	12254562	rs71369912	C	CCCGCGCACACACCCAT	32387.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=2086;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.000;QD=25.56;ReadPosRankSum=2.889;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:21,1246:0.98:1267
chr18	12274104	rs11545881	G	T	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:129,124:0.49:253
chr18	12308243	rs8087840	T	A	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.80;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	12308243	.	TGC	AGT	692	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=12;NR=9;PP=692;QD=35.4984702315;SC=GGCCCGCAGTTGCCGCTGTCG;SbPval=0.61;Source=Platypus;TC=23;TCF=13;TCR=10;TR=21;WE=12308253;WS=12308233;set=Platypus	GT:AD:AF:DP	1/1:2,21:0.91:23
chr18	12308245	rs8086821	C	T	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	12308377	rs8086993	C	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	12348285	rs11553521	T	C	7268.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr18	12351342	rs11080572	C	T	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr18	12358997	rs7407640	A	G	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr18	12359920	rs8097342	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	12363950	rs2298542	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	12421442	rs3906620	T	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	12429313	rs3760550	C	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	12453005	rs499013	A	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	12454230	rs116984958	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr18	12512385	rs139581657	CAA	C,CA	4587.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.565;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.377;QD=21.14;ReadPosRankSum=2.781;SOR=0.455;set=HC	GT:AD:AF:DP	1/2:6,175,36:0.81,0.17:217
chr18	12512559	rs550613	C	A	5194.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr18	12512574	rs567709	T	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.589;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	12546608	rs35057526	GA	G	404.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	12634934	rs35302137	CA	C	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.725;QD=6.55;ReadPosRankSum=-0.275;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:18,32:0.64:50
chr18	12634986	rs12454931	T	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	12657431	rs34472716	G	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	12658191	rs3902981	T	G	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	12658600	rs1062235	A	G	11600.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr18	12662148	rs1129214	G	A	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr18	12662190	rs5823232	G	GA	642.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.617;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:11,40:0.78:51
chr18	12678486	rs12966424	A	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	12680595	rs35232551	CA	C	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-0.962;QD=4.69;ReadPosRankSum=-1.582;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:33,45:0.58:78
chr18	12700918	rs137976891	CATAT	C	3184.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	12703067	rs3809916	A	G	7800.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr18	12703192	rs3809919	C	T	10680.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr18	12718593	rs2302768	A	G	7509.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr18	12819041	rs7245206	C	T	426.53	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.474;QD=19.39;ReadPosRankSum=-0.173;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr18	12951738	rs1474043	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:52,19:0.27:71
chr18	12955439	rs11286163	CT	C	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-1.259;QD=6.64;ReadPosRankSum=1.493;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:19,23:0.55:42
chr18	12963146	rs35999381	AT	A	695.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.112;QD=5.85;ReadPosRankSum=-0.415;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:68,51:0.43:119
chr18	12982760	rs12955780	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr18	12984144	rs6505776	C	A	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-3.142;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:99,71:0.42:170
chr18	12986802	rs113784266	G	GT	625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.202;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.578;QD=8.13;ReadPosRankSum=0.122;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:38,39:0.51:77
chr18	13001512	rs4499304	G	C	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=0.885;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:57,34:0.37:91
chr18	13001523	rs11080618	G	A	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=2.176;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:59,32:0.35:91
chr18	13008369	rs6505777	A	G	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	13030383	rs9964466	G	A	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	13040084	rs7229869	A	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr18	13049948	rs11441028	G	GA	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr18	13055915	rs11080623	A	C	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr18	13056333	rs2282541	C	T	4893.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:293,252:0.46:545
chr18	13068132	rs578208	T	C	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:83,75:0.47:158
chr18	13068323	rs75188168	T	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr18	13068339	rs75368222	T	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,18:0.34:53
chr18	13069782	rs6505780	C	T	2123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.013;QD=9.27;ReadPosRankSum=1.330;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:117,112:0.49:229
chr18	13072979	rs1787013	T	C	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:99,74:0.43:173
chr18	13087789	rs472992	A	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr18	13087815	rs527839	G	A	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	13088673	rs498685	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr18	13095401	rs476191	A	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.92;ReadPosRankSum=-0.432;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr18	13095609	rs474337	T	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:202,166:0.45:368
chr18	13096436	rs556371	T	C	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,30:0.43:69
chr18	13116432	rs1786263	G	T	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:198,157:0.44:355
chr18	13459840	rs78946079	G	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr18	13459879	rs138247051	T	TA	1360.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr18	13460037	rs59728040	G	A	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:79,75:0.49:154
chr18	13460078	rs59719495	T	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr18	13643179	rs11080665	C	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.571;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-1.077;QD=14.12;ReadPosRankSum=0.052;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:25,42:0.63:67
chr18	13666768	rs1149356	A	G	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:88,95:0.52:183
chr18	13731407	rs61281036	C	CA	93.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=6.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-0.496;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr18	13742365	rs4239313	A	C	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	13759816	rs4797812	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	13759820	rs4797813	G	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	13762011	rs4461147	C	A	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	13825727	rs1541276	A	C	1918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.599;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:112,100:0.47:212
chr18	13826088	rs17848292	C	T	5597.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:379,296:0.44:675
chr18	13826391	rs2236700	C	G	9420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-2.130;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:499,479:0.49:978
chr18	13826508	rs2236701	C	T	2874.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:207,146:0.41:353
chr18	14105016	rs61609068	C	A	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:154,100:0.39:254
chr18	14105853	rs8094412	C	A	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr18	14105923	rs2159940	T	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	14156241	rs115684852	A	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.83;QD=24.07;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	14157373	rs7505684	T	A	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	14179603	rs4797872	A	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	14378533	rs2137484	G	C	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr18	14378621	rs55811695	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=24.52;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	14393807	rs62080576	C	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=1.104;QD=10.48;ReadPosRankSum=-0.736;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr18	14393945	rs56386651	G	C	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	14543139	rs28535987	T	C	6754.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr18	14752768	rs45620343	G	A	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	14752957	rs12457503	G	A	9865.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr18	14779986	rs76927023	G	A	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-6.700;QD=2.13;ReadPosRankSum=1.124;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr18	14780019	rs72873710	G	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-5.681;QD=9.30;ReadPosRankSum=1.568;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr18	14780024	rs79199021	T	C	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-5.164;QD=9.39;ReadPosRankSum=1.583;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr18	14780037	rs72873711	C	A	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-4.290;QD=11.78;ReadPosRankSum=1.061;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr18	14780064	rs78339886	A	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-3.530;QD=8.27;ReadPosRankSum=0.153;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr18	14780082	rs11080793	G	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr18	14780083	.	C	T	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=4.761;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-3.968;QD=9.94;ReadPosRankSum=1.033;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr18	14780108	.	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-3.573;QD=7.20;ReadPosRankSum=-0.232;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr18	14780116	rs79644245	A	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-2.813;QD=3.92;ReadPosRankSum=-0.507;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr18	14830262	.	C	T	622.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr18	14848820	rs4090319	C	T	2733.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;MQRankSum=8.048;QD=23.57;ReadPosRankSum=0.294;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:4,112:0.97:116
chr18	14852335	rs12386087	C	A	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	15004191	rs34229476	G	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:89,72:0.45:161
chr18	15004661	rs11665121	C	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr18	15004728	rs11080802	A	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.92;MQRankSum=-1.036;QD=10.75;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr18	15005736	rs4890719	G	A	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	15005785	rs4890720	C	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr18	18534702	rs2663699	T	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr18	18619416	.	G	GA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=3.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.126;SOR=1.494;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr18	19065494	rs7234335	C	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	19079537	rs8087553	A	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	19079853	rs4800747	A	G	8227.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr18	19096838	rs11413472	G	GT	45.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=6.50;ReadPosRankSum=0.366;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr18	19100517	rs1395251	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	19100758	rs34960489	A	ATCT	5329.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	19100854	rs9947441	A	G	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	19115896	rs4800780	A	T	114.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	19119801	rs1818274	C	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	19119974	.	GATAT	G,GAT	1341.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.966;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.44;MQRankSum=0.571;QD=26.31;ReadPosRankSum=-2.763;SOR=1.280;set=HC	GT:AD:AF:DP	1/2:4,9,38:0.18,0.75:51
chr18	19153494	rs973730	C	T	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr18	19239330	rs185368091	C	T	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	19408950	rs9989532	C	T	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	19423963	rs3216119	GT	G	326.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	19780527	rs11352746	AC	A	5153.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=33.68;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr18	19996011	rs7227477	G	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	20555219	rs2336916	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	20564800	rs3052770	TTCA	T	231.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	20716014	rs139352344	GGGCGCCGGC	G	1905.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	20932384	rs8084251	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	20953485	rs9944662	C	A	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	20953720	rs8099409	G	A	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	20964769	rs8094375	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	21017836	rs7226498	T	C	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	21033582	rs8086258	G	C	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr18	21044607	rs2291993	G	A	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	21055092	rs7235571	A	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	21084265	rs117624142	T	A	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr18	21088081	rs1652381	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	21100240	rs1367083	C	T	4779.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr18	21103909	rs891387	T	C	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	21103971	rs891386	T	G	1791.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.27;ReadPosRankSum=2.277;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:2,75:0.97:77
chr18	21107628	rs111369676	G	GTATTGTATTTCT	1131.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.16;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	21109250	rs1788825	T	C	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr18	21109269	rs1652375	T	C	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	21109466	rs1652376	G	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	21113285	rs2510344	T	C	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr18	21119291	rs6507720	A	G	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	21119777	rs1140458	G	A	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	21120035	rs7239575	T	C	222.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	21120444	rs1805082	T	C	8008.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.92;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr18	21123536	rs201618643	TAA	T,TA	457.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=-1.238;SOR=1.002;set=HC	GT:AD:AF:DP	1/2:7,18,18:0.42,0.42:43
chr18	21124907	rs55809701	A	ACCC	1124.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.84;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:3,36:0.92:39
chr18	21124945	.	C	G	2768.77	.	AC=2;AF=1.00;AN=2;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	21127910	rs2435307	C	T	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	21134569	rs11340795	CA	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.25;ReadPosRankSum=-1.200;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr18	21140432	rs1805081	T	C	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	21192261	rs1652366	G	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	21338515	rs11308832	TC	T	1789.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	21474827	rs1268716	G	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr18	21475153	rs1262340	G	A	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	21481233	rs1154226	C	G	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	21481340	rs1154227	A	G	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	21483206	rs729814	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	21495483	rs1541836	T	C	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	21511034	rs1154232	C	A	6262.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr18	21511089	rs1154233	A	G	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr18	21511172	rs1258107	G	C	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	21513768	rs1131521	C	T	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	21534365	.	TAA	T	375.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.394;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=5.982;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=0.034;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:5,20:0.80:25
chr18	21662816	rs2305024	A	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	21693671	rs894931	G	A	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr18	21694618	rs4800176	G	A	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr18	21696783	.	G	GTT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.34;ReadPosRankSum=0.733;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr18	21703649	rs9956079	A	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	21705624	rs2306811	G	A	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	21706390	rs35976434	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.912;QD=2.26;ReadPosRankSum=0.151;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr18	21710321	rs12970083	C	T	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr18	21736933	rs1049683	T	G	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	21759593	rs12604451	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	21938384	rs7226913	T	C	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	21938396	rs7226922	T	C	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr18	21938658	rs7227401	T	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	21946572	rs656487	T	A	1439.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	22008913	rs582358	C	T	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	22010421	rs9783924	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	22017752	rs1941814	C	A	88.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	22018129	rs1791254	A	C	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	22020543	rs677688	C	G	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	22056615	rs17259800	C	T	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	22775185	rs1140026	C	T	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	22804244	rs4129657	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	23873463	rs1677016	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	23875336	rs1382260	T	A	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	24039964	rs3835044	AT	A	370.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	25543387	rs1041985	G	A	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	25565082	rs1220144	A	G	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr18	25570228	rs1628684	G	C	5894.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr18	25572837	rs1662733	G	A	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	25573308	rs1662734	C	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	25573401	rs11564295	T	C	5910.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr18	25573622	rs2957286	G	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	25727760	.	GA	G	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=1.109;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:153,47:0.23:200
chr18	28611139	rs276936	A	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr18	28659724	rs1658128	T	C	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	28662776	rs1790702	G	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	28666526	rs35717505	T	TTAA	2107.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	28671212	rs1790683	T	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	28671381	rs34593516	GA	G	853.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=20.33;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	28711519	rs1789072	C	T	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	28712737	.	CA	C	39	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=6;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=39;QD=32.0;SC=GCATATGTCTCAAAAAATTCA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=28712745;WS=28712727;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	28719674	rs1789043	A	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	28935375	rs8099566	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	28966518	rs1460597	G	C	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	28968371	rs16959856	G	A	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr18	28968959	rs9956865	C	T	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	28969008	rs16959863	C	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	28986333	rs4799570	A	C	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	28993501	rs7234288	C	A	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr18	28993589	rs7234333	C	T	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	29046398	rs2035042	G	A	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	29049018	rs11660216	C	T	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	29055957	rs1380866	A	G	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr18	29098323	rs2276149	G	A	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr18	29101230	rs55657337	T	A	1108.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.60;SOR=3.300;set=HC	GT:AD:AF:DP	1/1:2,61:0.97:63
chr18	29104698	rs2230233	C	T	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr18	29116462	rs2276150	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	29122922	.	G	GT	73.82	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	29125854	rs1042769	A	G	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr18	29126670	rs1791235	T	C	7871.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr18	29207155	rs1026123	C	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.56;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	29435778	.	TA	T	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=3.011;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.325;QD=3.81;ReadPosRankSum=-0.175;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:60,51:0.46:111
chr18	29438021	rs200112599	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.57;ReadPosRankSum=0.006;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr18	29480820	.	GAA	G	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.500;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr18	29493616	rs35203717	A	G	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	29497573	rs6506948	A	G	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr18	29617255	rs9947278	T	G	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	29625685	rs61749945	G	A	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr18	29672559	rs8095867	A	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	29708981	rs684359	G	A	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	29775226	rs3217505	TAC	T	288.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.87;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	29783164	rs17735714	G	A	131.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	29784370	rs17663067	C	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	29788107	rs4799640	G	A	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	29790378	rs2241891	C	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	29797921	rs616114	C	T	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr18	29797958	rs680321	T	C	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	29800119	rs673408	A	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	29972774	rs3786309	T	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	30050356	rs11664566	C	T	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr18	30093682	.	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-2.010;QD=3.18;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr18	30093688	.	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-2.010;QD=3.18;ReadPosRankSum=-0.253;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr18	30093722	rs11081773	A	C	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.92;QD=24.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	30352057	rs200605696	GCGCCGGCC	G	4926.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=43.60;SOR=1.695;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	30352114	rs71366355	C	G	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:5,177:0.97:182
chr18	30672711	rs271474	A	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	30804756	rs466113	C	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	30804756	.	CGA	TGC	1041	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=22;NR=15;PP=1041;QD=29.5802128341;SC=TGTTCTTTGTCGAGACTTCTG;SbPval=0.62;Source=Platypus;TC=38;TCF=22;TCR=16;TR=37;WE=30804766;WS=30804746;set=Platypus	GT:AD:AF:DP	1/1:1,37:0.97:38
chr18	30804758	rs457896	A	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	30806896	rs76533735	A	T	152.03	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	30806896	.	AT	TA	171	.	AC=2;AF=1.00;AN=2;BRF=0.09;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=171;QD=56.1169687156;SC=AATTGCTAATATAAGACACAT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=30806905;WS=30806886;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	30806897	rs77111689	T	A	152.03	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	30846895	rs9965081	A	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	30847180	rs58448816	C	T	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	30908046	rs370402331	GATTTTTTTTTTTTTTTTTTTT	G,GT	2596.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.65;QD=42.57;SOR=1.347;set=HC	GT:AD:AF:DP	1/2:0,42,19:0.69,0.31:61
chr18	30950168	rs9965655	T	C	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	30976968	rs4447495	C	G	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	30977255	rs6507018	G	A	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	31225030	rs4799705	G	T	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	31241497	rs9304126	C	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	31263320	rs8086318	G	A	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr18	31523144	.	TA	T	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.473;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr18	32335915	rs6650658	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	32386081	rs11664422	A	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	32386101	rs11664472	C	A	164.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	32386340	rs9952711	T	C	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.23;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr18	32400909	rs3216115	AC	A	2651.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	32402808	rs57525293	G	GTCT	983.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	32405071	rs1626394	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	32407425	rs1790526	A	G	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	32408900	rs9946576	T	C	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	32409571	rs1790534	T	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	32418186	rs17557695	T	A	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	32418265	rs1954861	G	A	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	32418634	rs1941753	T	A	11144.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,432:1.00:432
chr18	32444040	rs1617318	G	A	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	32444166	rs16966095	A	G	294.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	32455379	rs541157	T	C	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr18	32459704	rs2288085	A	G	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	32461896	rs623966	A	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	32470291	rs9944927	G	A	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	32470459	rs7227051	C	T	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr18	32585367	rs80105629	C	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	32650341	rs3744923	A	G	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	32720189	rs3786314	A	G	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	32822382	rs4799374	G	T	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	32823905	rs1054890	T	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	32826088	rs2278463	A	G	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	32838807	rs7229055	T	C	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.32;QD=27.77;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	32886528	rs147217916	T	TAGTC	1816.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	32887914	rs1131709	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	32887933	rs9963614	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	32917644	rs2032729	T	C	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr18	32917780	rs5823970	G	GA	347.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	32948446	.	T	TTTTA	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.452;QD=35.53;ReadPosRankSum=-0.418;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:2,22:0.92:24
chr18	32948510	rs2909340	G	A	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	33610700	rs183611379	C	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	33647254	rs1789517	A	C	10540.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr18	33691313	rs1540043	T	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	33706614	rs1789528	C	G	8268.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr18	33718201	rs74715150	T	TC	602.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=33.49;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	33721325	rs3819174	C	T	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr18	33736490	rs149870655	T	C	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr18	33778607	rs596644	C	A	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr18	33779821	rs646424	C	A	9755.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr18	33779855	rs623053	C	T	10900.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:2,418:1.00:420
chr18	33779896	rs540967	A	G	12026.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr18	33780020	rs623558	A	G	13017.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,507:1.00:507
chr18	33784959	.	C	CAA	51.94	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.31;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	33785093	rs678560	G	A	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr18	33785185	rs667667	A	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr18	33785304	rs667195	T	C	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	33793511	rs687387	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	33795425	rs631108	G	A	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	33828980	rs567458	C	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	33829077	rs568388	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	33831044	rs518413	C	T	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	33831189	rs594445	C	A	1640.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.013;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.04;ReadPosRankSum=1.842;SOR=0.475;set=HC	GT:AD:AF:DP	1/1:1,62:0.98:63
chr18	33848663	rs111317566	A	ATACAT	669.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=41.86;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	33877687	rs188660514	T	C	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	34092327	rs12454451	G	C	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	34205385	rs2644253	A	G	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	34232610	rs2848901	C	T	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	34232952	rs1893433	T	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	34233231	rs1893434	C	T	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr18	34297753	rs3809994	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	34298732	rs7240383	G	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	34310668	rs3744903	C	T	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr18	34323855	rs11878091	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	34324091	rs2303510	G	A	2414.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.561;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.336;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=-0.662;SOR=0.493;set=HC	GT:AD:AF:DP	1/1:1,96:0.99:97
chr18	34324190	rs2303509	C	T	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	34398914	rs1045781	C	T	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	34408969	rs9958080	C	G	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	34539578	rs3744904	A	G	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	35065374	rs5824066	CG	C	94	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.50;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	35065396	rs4799451	T	C	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	35145660	rs138975334	T	TCTCG	1321.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	39617865	rs145518234	C	CAG	1104.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.92;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	39623942	rs534507	A	G	180.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	39629423	rs111995394	C	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	39638115	rs76853733	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	40323497	rs1804730	G	T	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr18	40613840	rs12954451	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	41559268	rs7230555	T	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	41559321	rs7229587	C	G	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	42456653	rs663651	G	A	8186.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr18	42456670	rs3085861	C	CTCTT	8493.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr18	42533130	rs8096662	A	G	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	43206985	rs1484873	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	43221341	rs7233416	T	C	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr18	43243679	rs8092227	A	G	166.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	43245986	rs7234198	T	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	43246156	rs9960464	G	A	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr18	43246779	rs2170973	C	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	43247001	rs2156609	C	G	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	43247784	rs9964193	C	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	43248504	rs6507631	T	C	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr18	43248509	rs10451385	T	C	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	43248578	rs9304319	C	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	43252786	rs1531926	A	G	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr18	43258919	rs72437878	C	CT,CTT	645.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.078;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=1.736;SOR=1.479;set=HC	GT:AD:AF:DP	1/2:5,21,15:0.51,0.37:41
chr18	43307246	rs11877062	C	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	43307338	rs11877086	C	A	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	43307455	rs3861806	C	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	43310845	rs3819178	G	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	43314401	rs35812340	G	GA	306.50	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:3,18:0.86:21
chr18	43314473	rs8096571	T	A	133.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	43316538	rs2298718	A	G	7455.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.093;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.94;ReadPosRankSum=-1.340;SOR=0.234;set=HC	GT:AD:AF:DP	1/1:1,298:1.00:299
chr18	43319274	rs17675299	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	43319359	rs531281	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	43319519	rs1058396	G	A	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr18	43405792	rs1440822	T	C	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr18	43435738	rs514001	A	C	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	43438836	rs139942774	A	AT	156.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:2,9:0.82:11
chr18	43446734	rs3826633	T	C	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=2.625;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	43487885	rs11336875	TA	T	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=6.539;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=1.071;QD=5.09;ReadPosRankSum=1.538;SOR=2.786;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr18	43492121	rs67738770	CAGAG	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	43497710	rs3744998	A	G	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr18	43502190	rs1075906	G	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	43505558	rs4476262	C	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	43547127	rs11301517	TG	T	4050.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr18	43565195	rs1048827	G	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	43565380	rs57589400	A	G	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr18	43565399	rs58786055	C	A	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	43565514	rs60116181	G	A	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	43565555	rs79723750	T	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	43568593	rs3844540	T	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr18	43568717	rs2276199	T	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	43570777	rs7242970	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	43570814	rs7243109	C	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	43572178	rs113089939	A	AAAG	8099.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.158;QD=44.02;ReadPosRankSum=-0.467;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:1,183:0.99:184
chr18	43577865	rs10468858	G	C	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr18	43577908	rs10468980	T	C	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	43578623	rs10468860	A	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	43579395	rs55966192	T	C	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	43585536	rs9675392	A	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	43595802	rs73438258	C	T	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	43595850	rs11349070	TA	T	1215.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=-0.458;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:6,75:0.93:81
chr18	43652027	rs114538737	C	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	43652345	rs3745002	A	G	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	43668207	rs77958705	T	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	43670050	rs55743028	G	T	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:2,152:0.99:154
chr18	43678035	rs3753069	T	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	43684300	rs41274316	C	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	43684330	rs41274318	G	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	43684561	rs72903449	C	A	7127.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr18	43698309	rs1866321	C	T	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	43702733	rs9965812	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	43707880	rs4243278	A	G	43.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	43707900	rs74402027	A	G	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	44057011	rs74421427	T	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	44057673	rs74316327	C	T	9812.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr18	44063598	rs1377016	G	A	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr18	44085741	rs60852510	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	44098079	rs59128481	C	T	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	44100470	rs75572674	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	44104437	rs12606417	T	C	9706.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr18	44104650	rs12604163	C	T	7207.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr18	44114473	rs436433	T	C	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr18	44122010	rs10775482	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	44122737	.	A	G	2062.77	.	AC=2;AF=1.00;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	44122948	rs76922429	T	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	44126909	rs1893566	T	C	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr18	44135027	rs732108	A	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	44135143	rs11665444	T	C	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr18	44138902	rs4243280	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	44149474	rs2086005	G	A	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	44173449	rs328145	A	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	44181227	rs10163657	C	T	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr18	44181596	rs674948	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	44272034	rs533027	A	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	44424105	rs34052557	G	GA	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-0.294;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr18	44426877	rs644731	C	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	44526798	rs2187092	A	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	44561744	rs113947320	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	44595809	rs2289036	A	T	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	44601611	rs3816125	A	G	7292.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr18	44610718	rs16954999	T	C	4445.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr18	44610879	rs7504798	A	G	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	44635048	rs2635058	C	T	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr18	44693424	.	G	GT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-0.674;QD=3.47;ReadPosRankSum=-1.160;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr18	44702502	rs12968552	A	C	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	44702718	rs2277717	C	A	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr18	44746460	rs1355593	A	T	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	44757226	rs7236105	G	T	230.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	44771419	.	A	AT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.558;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:95,23:0.19:118
chr18	44771481	rs17723754	C	T	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	44771849	rs66497764	A	ATTTTTTTTT	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.79;ReadPosRankSum=1.743;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr18	44773382	rs9956387	A	T	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr18	45395845	rs34501809	TA	T	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.798;QD=6.06;ReadPosRankSum=-0.138;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr18	45691715	rs9646522	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	46147966	rs78756153	G	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:72,53:0.42:125
chr18	46190721	rs3816755	G	A	4955.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:216,232:0.52:448
chr18	46196856	rs3830253	AC	A	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-0.251;SOR=1.850;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr18	46196880	rs2279304	T	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr18	46284587	rs1038308	T	C	5467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-0.529;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:297,274:0.48:571
chr18	46284840	rs4556859	T	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chr18	46343666	rs3764481	C	T	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:254,197:0.44:451
chr18	46343818	rs9951895	T	C	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:106,106:0.50:212
chr18	46343913	rs62103298	A	G	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=0.475;QD=8.51;ReadPosRankSum=-0.483;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr18	46784633	rs2276200	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-2.252;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr18	46889514	rs79958143	G	A	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:154,184:0.54:338
chr18	46889624	rs3840892	A	AT	1064.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.286;QD=6.91;ReadPosRankSum=0.468;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:88,66:0.43:154
chr18	46956521	rs12456754	C	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr18	47088655	rs34474737	T	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:32,62:0.66:94
chr18	47088826	rs35978968	C	T	5556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.45;ReadPosRankSum=2.150;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:96,141:0.59:237
chr18	47088830	rs35816125	C	G	5546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.92;ReadPosRankSum=2.405;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:101,141:0.58:242
chr18	47093790	rs2000812	C	T	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr18	47093864	rs2000813	C	T	4709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-1.516;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:179,241:0.57:420
chr18	47102002	rs2276269	T	C	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:50,99:0.66:149
chr18	47113008	rs6507931	C	T	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,68:0.65:105
chr18	47313850	rs56085706	C	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-0.772;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr18	47318626	rs11549285	T	C	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr18	47320850	rs34944087	AAT	A	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.15;MQRankSum=1.526;QD=17.23;ReadPosRankSum=-0.222;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr18	47328930	rs10680947	C	CAA	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.029;QD=7.09;ReadPosRankSum=-0.293;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr18	47339798	rs2945506	G	A	1916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.845;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:82,98:0.54:180
chr18	47363009	rs621101	C	T	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:96,101:0.51:197
chr18	47363917	rs138128932	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-16.526;QD=0.58;ReadPosRankSum=-3.544;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:302,27:0.08:329
chr18	47363930	rs79271359	AG	GC	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-16.022;QD=0.95;ReadPosRankSum=-0.146;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:280,28:0.09:308
chr18	47363963	rs112417235	T	C	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:138,105:0.43:243
chr18	47373466	rs3017176	G	A	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.788;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:74,98:0.57:172
chr18	47375932	rs488890	C	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr18	47376103	rs490648	C	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.246;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:36,61:0.63:97
chr18	47376128	rs490697	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	47398504	rs3826580	T	C	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=-0.160;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:53,37:0.41:90
chr18	47398549	rs3826579	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:138,118:0.46:256
chr18	47401935	rs2276172	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr18	47401999	rs2276173	A	T	3456.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:113,167:0.60:280
chr18	47402280	rs657424	A	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	47404399	rs2276175	A	G	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr18	47405304	rs2276176	A	G	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.075;QD=8.31;ReadPosRankSum=-0.058;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:50,45:0.47:95
chr18	47405425	rs3841750	T	TGAG	5290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.047;QD=18.70;ReadPosRankSum=0.667;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:147,136:0.48:283
chr18	47405525	rs4939602	T	C	2799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.908;QD=21.05;ReadPosRankSum=0.986;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:59,74:0.56:133
chr18	47405530	rs4939603	C	T	2703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.917;QD=21.63;ReadPosRankSum=1.145;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:56,69:0.55:125
chr18	47406913	rs1217632	A	G	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,55:0.52:106
chr18	47406938	rs1217633	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr18	47406943	rs2276177	T	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr18	47429022	rs2298624	C	T	4886.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:253,248:0.50:501
chr18	47455923	rs2298628	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=-0.621;QD=4.06;ReadPosRankSum=-0.910;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr18	47455980	rs56278513	GA	G	726.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.409;QD=12.11;ReadPosRankSum=0.406;SOR=0.625;set=HC	GT:AD:AF:DP	1/1:5,55:0.92:60
chr18	47479855	rs1942416	A	C	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=0.051;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr18	47563299	rs1815930	T	C	13802.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr18	47563429	rs58132038	G	A	5010.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:181,244:0.57:425
chr18	47769194	rs1662895	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	47777012	rs1790458	C	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	47777358	rs920791	T	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	47788256	rs698617	C	T	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	47788544	rs112087763	T	G	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr18	47800179	rs125555	G	C	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr18	47810731	rs2276367	T	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	47813835	rs3753067	C	T	26847.77	.	AC=2;AF=1.00;AN=2;DB;DP=1065;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,1029:1.00:1029
chr18	47908556	rs6507992	G	A	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	48190271	rs3752085	T	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	48331524	rs2586776	G	A	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	48331553	rs2849233	T	C	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	48333367	rs2255672	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	48335839	rs144491761	A	G	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr18	48452307	rs1397266	C	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	48577782	rs7229678	G	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	48584855	rs57847829	A	ATT	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=1.069;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:5,32:0.86:37
chr18	48723217	rs35675106	C	T	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr18	48991891	rs7241264	G	A	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr18	49867224	rs9951523	T	C	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr18	50432602	rs2229080	C	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr18	50731829	rs4497763	A	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	50923932	rs7231978	G	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	50929098	rs10612041	CAAT	C	7013.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr18	51053218	rs113173464	T	TCACCCCAGGC	2176.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	51686057	rs9946304	G	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	51904461	rs35286005	C	CTTTA	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	51904498	rs3753057	G	A	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	52265308	rs9947055	A	C	9850.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,388:1.00:388
chr18	52551716	rs3737477	C	T	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	52555398	rs4343367	G	A	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	52571434	rs4801109	T	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	52571741	rs4801110	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	52575002	rs1944382	G	A	3154.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.538;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.04;ReadPosRankSum=-0.661;SOR=0.248;set=HC	GT:AD:AF:DP	1/1:1,125:0.99:126
chr18	52585071	rs138785518	GACACACACACAC	GACAC,G	1060.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	1/1:1.00:25
chr18	52586691	rs8090983	A	G	56.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	52608329	rs8087479	C	A	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr18	52895418	rs6567210	G	A	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr18	52895531	rs8766	T	C	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr18	52896000	rs8087569	A	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	52896003	rs8087570	A	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	52901607	rs41483647	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	52924695	rs74849864	C	T	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	53131179	rs151196106	C	CTGTG,CTG	647.75	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	0/1:0.84:19
chr18	53177740	rs9954890	A	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	53177774	rs9964328	G	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.67;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	53178061	rs67387556	G	A	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	53252388	rs599550	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	53302845	rs610362	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	53303101	rs611326	C	G	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	53332089	rs796742	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	53727502	rs2535724	T	C	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	54281790	rs655539	T	C	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr18	54285411	rs676951	G	A	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	54305564	rs657489	C	T	9066.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr18	54305757	rs681176	G	A	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr18	54339818	rs568078	C	G	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	54339977	rs566956	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	54346482	rs683248	T	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	54346510	rs597585	G	A	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	54346745	rs11452823	A	AT	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr18	54346804	rs525682	T	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	54348514	rs605067	C	T	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	54348650	rs474607	T	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	54353382	rs609195	A	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	54354076	rs5825199	T	TTC	1580.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.53;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	54354239	rs576095	T	C	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	54361837	rs637823	C	T	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	54398922	rs1421262	G	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	54694561	rs3833199	A	ACGGC	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	54815044	.	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.155;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=7.756;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=0.000;QD=2.70;ReadPosRankSum=2.079;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr18	54815047	.	T	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=7.940;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=0.000;QD=2.90;ReadPosRankSum=2.270;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr18	54815072	.	T	A	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=5.877;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=0.000;QD=6.28;ReadPosRankSum=2.259;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr18	54815077	.	G	C	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.349;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=5.930;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=0.000;QD=7.38;ReadPosRankSum=1.386;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr18	54815088	.	CGCTATT	C	376.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr18	54815137	.	G	A	40.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=-1.180;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr18	54815138	.	T	C	40.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=-1.180;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr18	55019963	.	T	TCA	1794.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.91;MQRankSum=2.594;QD=14.59;ReadPosRankSum=1.078;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:37,86:0.70:123
chr18	55027212	rs1942964	T	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	55103512	rs79019704	C	T	21449.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.382;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.014;QD=26.81;ReadPosRankSum=1.035;SOR=0.372;set=HC	GT:AD:AF:DP	1/1:3,797:1.00:800
chr18	55104016	rs61735644	T	C	10376.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr18	55111484	rs4940406	T	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.01;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr18	55143589	rs618953	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	55221648	rs536560	T	C	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	55221983	rs28617328	A	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	55226254	rs1736440	T	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	55226383	rs536765	G	C	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr18	55240455	rs577152	T	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	55253710	rs317815	G	A	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	55272968	rs4940931	C	T	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	55283236	rs9319918	T	C	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr18	55287739	rs388644	A	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	55288879	rs368935	A	G	5454.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr18	55289076	rs2032938	C	T	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr18	55289180	rs2032937	A	G	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	55317676	rs222581	C	T	5469.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr18	55335366	rs28424873	G	T	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	55335495	rs317844	A	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	55335550	rs28473343	A	C	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	55335803	.	G	A	65.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=62.28;MQRankSum=0.674;QD=10.96;ReadPosRankSum=-1.383;SOR=3.590;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr18	55335804	rs202206427	G	A	65.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.319;QD=16.44;ReadPosRankSum=-1.150;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr18	55352436	rs319459	G	A	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	55352470	rs143958246	TTTA	T	1061.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	55362532	rs319443	T	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	55362816	rs319442	G	A	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	55364830	rs319439	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	55364852	rs319438	A	G	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	55397512	rs319432	T	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	55397624	rs33964473	GATA	G	5273.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	55397674	rs319433	G	C	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr18	55397871	rs319434	T	C	7047.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr18	55398604	rs12606419	T	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=37.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	55398606	rs12606420	T	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=37.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	55398756	rs651867	T	C	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr18	55816791	rs4149601	G	A	7348.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr18	55832896	rs564442	C	T	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	55983330	rs2288774	T	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	56008148	rs4149609	A	G	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	56024396	rs10543922	AT	A	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.489;QD=2.35;ReadPosRankSum=1.668;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:55,36:0.40:91
chr18	56040649	rs1943994	T	C	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr18	56054616	rs5825274	AT	A	86.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.68;ReadPosRankSum=-1.383;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr18	56118493	rs17669	C	T	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	56182174	rs7505023	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	56182507	rs4940399	C	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	56196451	rs7236563	C	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	56202059	rs10469211	A	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	56202418	rs10469212	T	C	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr18	56202768	rs3809983	C	A	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr18	56202982	rs3826594	A	T	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr18	56203074	rs3809982	G	A	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	56203120	rs3809981	C	T	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	56203411	rs3809980	G	C	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr18	56203447	rs3809979	A	G	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr18	56203891	rs3809978	G	T	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr18	56203898	rs3809977	T	G	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr18	56204250	rs3809976	A	C	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.90;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr18	56204387	rs67925233	ACAGTTGATGTGTCCT	A	6643.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr18	56204410	rs55910046	C	T	6754.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr18	56204671	rs4940404	A	T	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr18	56204747	rs3826593	G	A	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	56204932	rs3809973	T	G	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr18	56204945	rs3809972	C	G	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr18	56204977	rs3809971	C	T	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr18	56204991	rs3809970	C	T	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr18	56205262	rs12103986	A	C	9348.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr18	56205481	rs9962203	G	A	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	56205551	rs9962964	C	T	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	56245965	.	GAC	G	231.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr18	56383323	rs9959997	T	C	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	56400826	rs28740963	T	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	56409002	rs4940747	A	C	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	56646583	rs35743757	A	AAAAT	175.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	56648756	rs61733373	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	56703194	rs9961940	A	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	56711225	rs11152115	A	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	56711284	rs11152116	C	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	56807308	rs3744890	C	G	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr18	56807339	rs3744891	T	G	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	56819930	rs3760555	T	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	56936395	rs7226481	T	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	56940307	rs2271733	G	T	8292.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr18	57000303	rs2298712	G	A	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	57014713	rs7234168	G	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	57115203	rs1893788	T	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	57134152	rs4940876	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	57147351	rs1663548	G	A	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	57147390	rs1790508	C	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.98;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	57147390	.	CAG	GAT	59	.	AC=2;AF=1.00;AN=2;BRF=0.56;FR=1.0000;HP=1;HapScore=3;MGOF=20;MMLQ=27;MQ=60.0;NF=3;NR=3;PP=59;QD=18.7446458104;SC=TGAATAAAGTCAGACAATATC;SbPval=0.52;Source=Platypus;TC=7;TCF=4;TCR=3;TR=6;WE=57147400;WS=57147380;set=Platypus	GT:AD:AF:DP	1/1:1,6:0.86:7
chr18	57147392	rs1663549	G	T	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.91;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	57638330	rs10871774	G	A	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	58283202	rs7229783	G	T	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr18	58287311	rs9949231	A	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	58291479	rs9947661	T	C	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr18	58310604	rs11659206	C	T	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	59157764	rs680530	T	C	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	59158065	rs681902	T	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	59166541	rs12964819	C	T	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	59166762	rs113925343	T	TAC	666.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chr18	59170304	rs595093	C	G	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr18	59174759	rs1943330	C	A	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	59174817	rs1547956	C	A	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	59203707	rs62097360	G	A	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	59206197	rs5825446	C	CT	1066.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr18	59483514	rs9319985	A	G	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:4,313:0.99:317
chr18	59768375	rs17714063	A	G	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr18	59770033	rs12326381	C	T	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	59772926	rs17714262	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	59774037	rs9319997	C	T	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr18	59774186	rs2840359	T	C	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	59780424	rs17714875	A	G	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	59781592	.	C	CAAA	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.67;ReadPosRankSum=0.887;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr18	59781800	rs13381627	A	G	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	59805532	rs9959632	T	C	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	59807547	rs55951317	T	TA	134.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=13.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	59807604	rs55715769	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	59807796	rs56189211	A	T	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	59810563	rs34227891	A	G	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	59813265	rs61751989	A	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	59814268	rs9320000	G	A	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	59814324	rs9320001	G	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	59821949	rs11659731	G	A	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	59824209	rs1021952	A	T	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	59824490	rs1021953	A	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	59825109	rs17715866	A	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	59855291	rs17644012	C	T	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	59894764	rs17717783	T	C	5716.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr18	59936081	rs55806215	A	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	59936142	rs17645999	C	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	59942746	.	A	AT	722.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.995;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:11,47:0.81:58
chr18	59946943	rs10515985	G	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	59947118	rs2980981	G	A	6356.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr18	59947988	rs1506325	G	A	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	59954765	rs1567038	G	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	59959009	rs117705794	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	59992547	rs7238731	G	A	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	59992577	rs1805033	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	60025458	.	G	GT	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.714;QD=1.02;ReadPosRankSum=1.074;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:122,33:0.21:155
chr18	60027005	rs6567270	T	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	60027149	rs6567271	T	A	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	60027171	rs6567272	C	T	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr18	60027241	rs1805034	C	T	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	60027361	rs9653064	G	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	60036083	rs8092336	A	G	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr18	60190786	.	C	CCCG	232.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.12;QD=38.80;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	60191428	rs7229802	G	A	8484.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr18	60232405	rs4940561	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	60237388	rs8096750	A	G	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	60241732	rs3744926	C	T	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr18	60243876	rs11557713	G	A	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr18	60382986	.	CCGGCGGCCGCCGCTGCGGCAGCAGCAGCAGCAGCGGCGGCCG	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.501;SOR=1.280;set=HC	GT:AD:AF:DP	0/1:40,6:0.13:46
chr18	60491364	rs34639796	CA	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.270;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:38,29:0.43:67
chr18	60562298	rs624821	A	T	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	60572437	rs3217528	GT	G	761.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.84;MQRankSum=0.523;QD=16.56;ReadPosRankSum=1.630;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:2,44:0.96:46
chr18	61034175	rs427065	A	G	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.07;SOR=5.119;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr18	61078888	rs11383277	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr18	61154351	rs2271253	T	C	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	61156499	rs17071181	T	C	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	61156606	rs12454742	G	C	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	61160287	rs2289519	T	C	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr18	61160320	rs2289520	G	C	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr18	61170925	rs8093128	T	C	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr18	61225801	rs7244584	C	T	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr18	61226694	rs11152391	G	A	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	61226740	rs12103954	G	A	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	61228248	rs9676250	T	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	61231143	rs33927218	AAAAAT	A	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=62.26;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.109;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr18	61231417	rs9957786	A	G	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr18	61233739	rs2077549	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	61254525	rs3216123	A	AT	911.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:4,44:0.92:48
chr18	61256117	rs77936810	GC	G	443.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	61261515	rs11152394	T	C	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.96;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	61261540	rs11152395	T	C	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	61261565	rs11152396	C	G	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	61264298	rs1020694	G	A	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr18	61264468	rs1020693	C	T	13298.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:1,508:1.00:509
chr18	61271065	rs7229459	G	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	61308895	rs2518061	A	G	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.67;QD=25.60;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr18	61325905	rs7228687	T	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	61326505	rs8089032	T	A	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	61326597	rs8085479	A	C	12107.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=45.18;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr18	61326602	rs8085482	A	G	12338.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.23;QD=45.03;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr18	61326609	rs8089201	T	G	12004.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.22;QD=44.46;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr18	61326628	rs11370831	A	AT	7603.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=31.42;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr18	61377579	rs1395268	A	C	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	61387993	rs12607732	T	C	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	61390316	rs1395265	C	A	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr18	61390332	rs1395266	C	T	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr18	61390361	rs1395267	T	C	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr18	61390570	rs953695	T	G	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr18	61390649	rs953696	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	61391228	rs2089318	T	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	61391323	rs147160513	CTCT	C	2571.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=42.86;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	61391449	rs144614464	C	CTCTTCT	1198.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=42.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	61391505	rs144622175	CTCT	C	3365.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.43;QD=34.34;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	61391697	rs12326861	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	61393442	rs9965604	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	61393644	rs1893563	T	A	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	61394300	rs8097334	C	T	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr18	61394403	rs8098025	A	G	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	61394522	rs6567386	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	61463784	rs1701648	G	T	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	61465746	rs34405525	GA	G	471.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	61465810	rs1720858	A	G	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	61465822	rs113041735	A	AT	2305.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:4,106:0.96:110
chr18	61468306	rs2689399	G	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	61575166	rs11417838	A	AT	33.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.22;ReadPosRankSum=1.930;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr18	61647069	rs1944270	G	A	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr18	61654463	rs3826616	A	G	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr18	63430340	rs2276190	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	63430344	rs2276191	T	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	63477317	rs11332924	GA	G	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=1.378;QD=8.72;ReadPosRankSum=0.519;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr18	63489378	rs8097752	C	T	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr18	63511410	rs145270355	G	GATTTATATATATAT	158.90	.	AC=2;AF=1.00;AN=2;DB;DP=9;MQ=63.51;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	63530016	rs2291343	A	G	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr18	64176365	rs1055335	G	T	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr18	64748928	rs11423865	C	CT	1881.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.057;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.38;ReadPosRankSum=2.405;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:4,84:0.95:88
chr18	65178103	rs112210097	G	GCA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.25;ReadPosRankSum=-0.366;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr18	65179829	rs2279269	G	A	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr18	66367607	rs72955911	A	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	66503897	rs66538157	CAAA	C	265.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.53;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	66504093	rs485613	A	C	6803.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr18	66504459	rs572020	A	T	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	66511027	rs9962597	C	T	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	66511207	rs33926572	TA	T	445.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	66513256	rs8088575	A	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	66513471	rs1954878	C	G	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	66513662	rs1977942	T	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=24.46;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr18	66513749	rs1970675	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	66513769	rs1539895	A	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	66513840	rs1970674	C	A	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	66542006	rs745894	G	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	66542108	rs2004027	T	A	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	66678131	rs7234663	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	66678453	rs930164	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	67068605	rs33984456	TG	T	3494.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:6,131:0.96:137
chr18	67531642	rs763361	T	C	6484.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.485;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=-1.349;SOR=0.242;set=HC	GT:AD:AF:DP	1/1:1,256:1.00:257
chr18	67563309	rs1630425	A	C	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	67563348	rs1788115	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	67613926	rs10782036	A	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	67613944	rs57226213	T	TA	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.609;MLEAC=1;MLEAF=0.500;MQ=61.34;MQRankSum=0.709;QD=12.23;ReadPosRankSum=-1.188;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr18	67671294	rs7998	C	T	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	67718688	rs4891392	A	G	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr18	67724802	rs12968602	A	G	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	67726975	rs11876398	A	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	67727003	rs1435086	A	T	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	67733234	rs11151561	T	A	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	67741117	rs1369292	G	A	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr18	67741309	rs1369293	G	A	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	67742801	rs285228	G	A	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	67759549	rs4891394	C	A	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr18	67809647	rs11665653	A	C	704.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.741;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=0.290;SOR=1.561;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr18	67812773	rs11662011	G	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	67817744	rs12606964	T	C	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	67860412	.	C	CA	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=6.645;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.149;QD=2.73;ReadPosRankSum=0.262;SOR=0.181;set=HC	GT:AD:AF:DP	0/1:44,24:0.35:68
chr18	67860719	rs283250	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	67863850	rs74941514	T	TCTC	6106.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr18	67871343	rs3911730	A	C	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr18	67992279	rs2231562	G	A	9344.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr18	70209321	rs7237888	C	A	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	70417396	rs922999	C	T	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	70532840	rs10164255	T	G	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	70532977	rs10163845	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	70534401	rs6566677	G	T	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	71442075	rs11872509	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	71442075	.	TGG	CGT	110	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=24;MQ=60.0;NF=2;NR=1;PP=110;QD=54.4892916207;SC=AAAAAGAAGTTGGAAGATGCA;SbPval=0.7;Source=Platypus;TC=3;TCF=2;TCR=1;TR=3;WE=71442085;WS=71442065;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	71442077	rs11875403	G	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	71803119	rs5826303	G	GA	638.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=-0.040;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:6,36:0.86:42
chr18	71920966	rs1790871	T	C	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr18	71930734	rs2032262	T	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	71930758	rs2032263	G	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	71930834	rs144732931	C	CTG	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	71930844	rs2032264	C	G	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	71989909	rs10164170	T	C	195.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	71990033	rs10163785	G	T	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	71996377	rs1541292	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	72020475	rs8093010	T	C	3149.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.42;ReadPosRankSum=-0.515;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:2,127:0.98:129
chr18	72021548	rs12608084	C	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	72021717	rs12606060	T	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	72113730	rs3861310	A	G	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	72114455	rs8087020	C	T	8441.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr18	72167124	rs3764509	C	G	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	72168608	rs2303463	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	72173270	rs35061137	GC	G	2675.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr18	72173278	rs34780792	G	A	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr18	72176083	rs2278161	T	C	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	72178161	rs2278159	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	72178300	rs2278158	G	T	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	72179579	rs734559	G	A	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	72180739	rs2241510	G	A	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	72183695	rs2241509	T	A	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	72186059	rs733062	G	A	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	72226455	rs12605490	A	T	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	72226539	rs12607796	T	C	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	72226809	rs7239132	C	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	72228124	rs4263028	A	G	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr18	72228269	rs4329999	G	A	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.463;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	72238283	rs4892244	A	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	72247278	rs4892247	C	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	72250762	rs11659237	T	C	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr18	72264397	rs7505285	A	C	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.13;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	72264406	rs7505289	A	G	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.96;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	72264473	rs7505334	C	T	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	72343008	rs7243081	T	C	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	72493314	rs7228438	G	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	72516095	.	C	CT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.479;QD=1.15;ReadPosRankSum=-0.808;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr18	72593118	rs2628126	C	T	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	73130653	rs3214645	G	GTT	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.991;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr18	73139335	rs7235563	C	G	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:123,121:0.50:244
chr18	74082584	rs9676093	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr18	74090957	rs56087742	CG	C	8841.73	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr18	74092366	rs12970367	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr18	74153146	rs59762437	G	A	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	74208485	rs3841258	CG	C	3093.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.276;QD=27.87;ReadPosRankSum=0.722;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:2,109:0.98:111
chr18	74208573	rs4891164	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	74591992	rs5826483	G	GT	355.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.48;MQRankSum=1.039;QD=12.68;ReadPosRankSum=-0.935;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr18	74611127	rs608433	A	G	5407.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr18	74648536	rs630229	G	T	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	74671768	rs470403	T	C	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	74680114	rs17575711	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	74680208	rs73968242	C	T	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr18	74680259	rs657066	C	T	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr18	74680369	rs470774	C	T	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	74702113	rs71172389	AT	A	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.160;QD=2.81;ReadPosRankSum=-0.695;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr18	74702864	rs9676113	G	A	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	74702999	rs9676140	C	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	74779614	rs4890887	C	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	74779866	rs4890888	G	A	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	74779972	rs112846387	C	CGT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.07;ReadPosRankSum=2.304;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr18	74962447	rs13306375	A	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	74962645	rs5374	T	C	8582.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr18	74962810	rs5375	G	T	10804.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr18	74963227	rs75393275	C	T	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr18	74980809	rs5376	G	A	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr18	76753588	rs7240860	A	G	8971.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr18	76753768	rs2447437	C	G	9532.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.60;ReadPosRankSum=0.597;SOR=0.612;set=HC	GT:AD:AF:DP	1/1:1,403:1.00:404
chr18	76754466	rs2472644	C	T	9241.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr18	77067000	rs3760541	T	G	3849.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.52;ReadPosRankSum=2.286;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:2,155:0.99:157
chr18	77102423	rs11659393	G	T	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	77107934	rs9965202	C	T	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr18	77132755	rs2271392	T	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	77132793	rs3817178	G	A	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr18	77135472	rs2280058	A	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	77137202	rs1110784	A	G	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	77156103	rs71359461	G	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	77156449	rs58346397	G	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	77160235	rs56376587	A	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	77160256	.	G	GGGGGGC	547.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	77160367	.	C	CGCCCCG	5848.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=1.858;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=43.01;ReadPosRankSum=1.133;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:5,131:0.96:136
chr18	77170006	rs182507	C	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	77171061	rs2230112	T	G	22630.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.570;ClippingRankSum=0.000;DB;DP=888;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=0.694;SOR=0.237;set=HC	GT:AD:AF:DP	1/1:1,875:1.00:876
chr18	77210902	rs680802	C	T	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	77402305	rs56014953	C	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	77420703	rs868678	C	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	77439637	rs75667721	G	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	77473127	rs2279103	C	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	77477515	rs8084175	C	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	77478166	rs55830009	G	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	77489169	rs9956086	G	A	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	77513465	rs8086389	G	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	77513721	rs626169	T	C	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr18	77513841	rs76088733	G	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	77623691	.	GGGC	G	122	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=4;HapScore=2;MGOF=77;MMLQ=24;MQ=60.0;NF=3;NR=0;PP=122;QD=46.6666666667;SC=CCTGCTCCCCGGGCGGCGGCG;SbPval=1.0;Source=Platypus;TC=15;TCF=14;TCR=1;TR=3;WE=77623701;WS=77623681;set=Platypus	GT:AD:AF:DP	0/1:12,3:0.20:15
chr18	77659561	rs3744886	G	T	14273.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:1,552:1.00:553
chr18	77663940	rs3744881	G	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	77694128	rs3837882	TA	T	640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.631;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=1.341;QD=7.72;ReadPosRankSum=-1.173;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:26,57:0.69:83
chr18	77703476	rs2277723	A	G	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr18	77724726	rs8095764	A	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr18	77917479	rs62101564	G	A	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	77921331	rs33942860	CAG	C	9254.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,214:0.99:216
chr18	77926795	rs11275834	T	TACAAATAAC	3632.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=52.65;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	77927028	rs1879105	A	G	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	107456	.	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.032;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=2.411;MLEAC=1;MLEAF=0.500;MQ=46.46;MQRankSum=-1.052;QD=0.97;ReadPosRankSum=-1.512;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:37,6:0.14:43
chr19	287825	.	C	T	1689.77	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:18,68:0.79:86
chr19	287970	.	G	GT	1442.73	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr19	288062	rs11542542	G	A	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:73,157:0.68:230
chr19	288246	rs10409452	T	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr19	312020	rs8104600	A	G	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:359,116:0.24:475
chr19	312143	rs10416918	T	C	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr19	312179	rs57360893	A	G	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.979;QD=3.09;ReadPosRankSum=0.745;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:354,112:0.24:466
chr19	326481	rs4897949	G	A	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.413;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.621;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:31,41:0.57:72
chr19	327260	.	T	TA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.936;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr19	327998	rs2305113	G	T	3021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=1.204;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:77,150:0.66:227
chr19	335946	rs3816322	G	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr19	367251	rs117935266	T	G	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-2.367;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:118,57:0.33:175
chr19	367313	rs585487	G	A	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	371369	rs644609	G	T	1004.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.503;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:55,51:0.48:106
chr19	371396	rs644644	G	C	3467.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.89;ReadPosRankSum=0.021;SOR=0.577;set=HC	GT:AD:AF:DP	1/1:1,93:0.99:94
chr19	372551	rs652081	A	G	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	373673	rs2303814	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	373690	rs74176336	C	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	373916	rs117982583	C	T	7552.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:156,353:0.69:509
chr19	374492	rs10410345	G	C	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:26,74:0.74:100
chr19	374547	rs648770	T	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	407900	rs10411998	A	G	7398.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr19	418769	rs12981152	G	A	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	418948	rs61749990	C	T	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:141,72:0.34:213
chr19	422534	rs12984753	G	A	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.30;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	422543	rs2287958	G	A	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.63;SOR=2.256;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	422555	rs2287957	G	A	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	425182	rs61735134	G	A	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:51,74:0.59:125
chr19	439055	rs112380345	G	A	3729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=-0.694;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:110,169:0.61:279
chr19	460475	rs12980271	G	C	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	460668	rs189741717	C	G	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	460729	.	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.23;ReadPosRankSum=0.789;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	463810	rs60512152	GC	G	1034.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	464310	rs34551779	A	G	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	496652	rs114840310	A	G	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=13.78;ReadPosRankSum=2.194;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr19	498212	rs12461640	A	C	8939.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr19	498524	rs2302217	A	G	9074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.589;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=0.851;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:296,457:0.61:753
chr19	500215	rs74361302	C	A	5099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=-0.657;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:158,250:0.61:408
chr19	501701	.	G	GACACCACCTCCCCGGAGCCTCCCA	2810.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.201;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.99;MQRankSum=2.856;QD=36.04;ReadPosRankSum=-1.115;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:42,36:0.46:78
chr19	501743	.	T	TCTCCCGACACCACCTCCCAGGAGCCTCCCGACACCACCTCCCAGGAGC	6421.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=2.520;MLEAC=2;MLEAF=1.000;MQ=63.47;MQRankSum=-2.478;QD=105.27;ReadPosRankSum=0.570;SOR=1.938;set=HC	GT:AD:AF:DP	1/1:7,54:0.89:61
chr19	504796	rs149092655	C	T	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.047;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:154,72:0.32:226
chr19	504830	rs7246543	C	G	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-1.702;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:245,127:0.34:372
chr19	505071	rs1140823	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	507450	rs7246920	G	T	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	519336	rs112370786	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr19	536088	.	C	CGGGGCGCTGGGAGCCTCACATCCTCGTCCTTCCGGGACCT	723.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=15.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=-3.045;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr19	541685	.	C	T	21	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=4;PP=21;QD=13.9428031368;SC=CTTTTTCTCCCTCCCCATGTC;SbPval=1.0;Source=Platypus;TC=21;TCF=3;TCR=18;TR=4;WE=541693;WS=541675;set=Platypus	GT:AD:AF:DP	0/1:17,4:0.19:21
chr19	544315	rs3760874	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.694;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr19	547224	rs4919846	A	G	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	547491	rs2070795	C	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	548865	rs12972174	C	T	1386.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.706;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.369;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.01;ReadPosRankSum=-0.816;SOR=0.535;set=HC	GT:AD:AF:DP	1/1:1,62:0.98:63
chr19	549595	rs1599883	T	C	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	549678	rs1599882	A	G	13181.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr19	549725	rs58562291	T	C	5564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=-2.179;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:339,165:0.33:504
chr19	549728	rs58601458	C	G	5551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=-1.593;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:332,153:0.32:485
chr19	577760	rs2283569	T	C	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr19	578208	rs2283570	C	T	2814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=0.687;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:97,141:0.59:238
chr19	579010	rs7253615	G	A	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-1.553;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:32,52:0.62:84
chr19	579100	rs2283573	C	T	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:134,216:0.62:350
chr19	579157	rs28921990	T	C	4748.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:144,225:0.61:369
chr19	579252	rs150528585	AGGGTGCCTTCCCGAAGG	A	3593.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:75,92:0.55:167
chr19	579450	rs2283574	G	A	4812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=7.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=-1.247;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:142,237:0.63:379
chr19	579627	rs1803202	C	T	3381.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:81,157:0.66:238
chr19	579699	rs12608994	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr19	579713	rs12609013	C	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	580163	rs5826703	GA	G	809.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr19	580388	rs2229664	C	G	4928.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:158,240:0.60:398
chr19	580575	rs28992474	C	T	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:27,78:0.74:105
chr19	580810	rs10422916	T	C	2851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=-1.688;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:82,100:0.55:182
chr19	580837	rs28992475	A	G	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.58;ReadPosRankSum=-0.779;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:46,45:0.49:91
chr19	580841	rs28992476	C	T	1680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.28;ReadPosRankSum=-0.461;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:41,38:0.48:79
chr19	580856	.	C	G	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.225;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.16;ReadPosRankSum=0.726;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr19	580870	rs28992477	A	C	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.82;ReadPosRankSum=-1.212;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr19	580883	rs12459868	G	A	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=1.044;QD=20.82;ReadPosRankSum=-1.239;SOR=2.461;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	580884	.	G	A	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=1.091;QD=21.76;ReadPosRankSum=-1.853;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	581198	.	T	C	365	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=15;MQ=57.11;NF=20;NR=5;PP=365;QD=15.9908485019;SC=GGTCCCGGACTCAGCCCTCCG;SbPval=0.49;Source=Platypus;TC=49;TCF=40;TCR=9;TR=25;WE=581206;WS=581188;set=Platypus	GT:AD:AF:DP	1/0:24,25:0.51:49
chr19	581207	.	CGGACTGGGTGAGGGGCCTAGACTGGGGGTCCCGGACTCAGCCCTCA	C	1825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=10.49;ReadPosRankSum=1.825;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:86,88:0.51:174
chr19	581633	rs3764937	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr19	582253	rs4919862	T	C	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	582468	rs2074962	A	G	2886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=-0.436;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:65,131:0.67:196
chr19	582775	rs8637	A	G	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-0.037;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:56,84:0.60:140
chr19	582927	rs8259	T	A	1562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=0.781;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:57,78:0.58:135
chr19	613307	rs2301778	C	T	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-1.636;QD=6.24;ReadPosRankSum=0.721;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:126,73:0.37:199
chr19	613554	.	G	GGGGGCT	1393.73	.	AC=1;AF=0.500;AN=2;DP=167;set=Intersection	GT:AD:AF:DP	0/1:98,49:0.33:147
chr19	613625	.	A	C	71.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-3.338;QD=2.17;ReadPosRankSum=-1.157;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr19	613626	.	T	C	71.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-3.277;QD=2.24;ReadPosRankSum=-1.482;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr19	613898	rs1054786	T	C	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.282;QD=6.38;ReadPosRankSum=0.622;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:71,42:0.37:113
chr19	614028	.	G	GGGGGCGTGGCCGGGGCGGGTGCCCTGGCGGGGGA	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.79;ReadPosRankSum=1.328;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr19	617195	rs11670098	C	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=1.199;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr19	617205	rs2072122	T	C	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.347;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:50,22:0.31:72
chr19	617963	rs41546612	T	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.199;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr19	619021	rs14155	G	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr19	619574	rs10853990	T	G	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.250;QD=6.32;ReadPosRankSum=0.181;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:66,41:0.38:107
chr19	619772	rs11669381	G	C	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.079;QD=6.06;ReadPosRankSum=-0.053;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:114,65:0.36:179
chr19	621076	rs144035257	G	A	1727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=1.309;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:22,80:0.78:102
chr19	621712	rs2238547	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	622336	rs2238549	T	G	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-2.149;QD=2.47;ReadPosRankSum=2.366;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr19	623080	rs41563114	A	AT	848.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr19	625198	rs1056766	A	G	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:139,90:0.39:229
chr19	629503	rs2283577	G	A	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-2.276;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	633013	rs56090114	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:60,17:0.22:77
chr19	633381	rs11669858	A	G	1770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-0.003;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:247,114:0.32:361
chr19	633529	.	G	GGCGCCGCCGCCGCCGCCGCCGCC	1991.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=1.576;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:138,56:0.29:194
chr19	633618	rs9304925	C	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=1.260;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr19	641215	rs7246140	T	C	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:67,156:0.70:223
chr19	643104	.	G	GGAGGGGACTCGTGGTCTGGGGCAGGGGGGGCTCCTCGTGTCTGTCGTGGTCAT	1487.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=185.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	646722	rs142396100	A	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr19	646891	rs10403235	G	A	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	647039	rs2074460	T	C	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	650193	rs147659622	A	G	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.248;QD=6.98;ReadPosRankSum=1.111;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:44,27:0.38:71
chr19	651543	rs116680040	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	652206	rs8102953	G	A	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	652238	rs11554788	A	G	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:60,122:0.67:182
chr19	652739	rs12973146	C	G	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:92,72:0.44:164
chr19	652948	rs10153505	T	G	7239.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	676559	rs62134281	G	A	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.686;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,34:0.65:52
chr19	680378	rs7246311	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr19	685985	rs62131270	G	C	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:28,65:0.70:93
chr19	686791	rs10439152	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-1.837;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	687142	rs8102982	G	A	8294.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	691909	rs4375794	T	C	9357.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr19	695272	rs146599231	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr19	725939	rs3787017	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr19	726910	rs28452452	G	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr19	727225	.	C	CAACCCT	5056.73	.	AC=2;AF=1.00;AN=2;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=43.22;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	727237	.	C	CGACCCT	2682.73	.	AC=2;AF=1.00;AN=2;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=22.36;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:4,116:0.97:120
chr19	727544	rs3746168	C	G	28789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.578;ClippingRankSum=0.000;DB;DP=1164;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=0.700;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:419,726:0.63:1145
chr19	727550	rs3746169	T	C	28479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=1118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=0.177;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:398,702:0.64:1100
chr19	727552	rs3746170	C	T	28260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.07;ReadPosRankSum=0.607;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:397,687:0.63:1084
chr19	731055	rs10405821	G	C	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=2.143;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:94,34:0.27:128
chr19	731077	rs10405836	GG	CT	1574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.671;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=0.683;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:121,47:0.28:168
chr19	731144	rs1050457	A	G	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.204;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:251,87:0.26:338
chr19	740272	rs7245884	C	T	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:66,125:0.65:191
chr19	740560	rs10419493	T	C	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	746206	rs2384776	C	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:41,61:0.60:102
chr19	746712	rs10421265	C	T	1593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=3.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.221;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:182,93:0.34:275
chr19	815086	rs351988	A	G	4997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=1.167;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:118,236:0.67:354
chr19	840984	rs2074639	C	T	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:109,153:0.58:262
chr19	844020	rs351111	G	A	4651.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:93,222:0.70:315
chr19	844077	rs351112	A	C	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:66,133:0.67:199
chr19	862024	rs1683561	C	G	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	863356	rs10506	C	T	8915.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	871447	rs1683570	A	G	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	873743	rs1651888	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.16;ReadPosRankSum=-0.246;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	876911	.	G	A	271	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5001;HP=3;HapScore=2;MGOF=58;MMLQ=26;MQ=60.0;NF=12;NR=4;PP=271;QD=19.1107007842;SC=CACCTGCCACGGGGCCCCCAC;SbPval=0.51;Source=Platypus;TC=22;TCF=17;TCR=5;TR=16;WE=876919;WS=876901;set=Platypus	GT:AD:AF:DP	1/0:6,16:0.73:22
chr19	876928	.	CA	C	844	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5011;HP=2;HapScore=1;MGOF=31;MMLQ=23;MQ=60.0;NF=14;NR=8;PP=844;QD=39.9545454545;SC=CCACCTGCCACAGGGCCCCCA;SbPval=0.52;Source=Platypus;TC=26;TCF=17;TCR=9;TR=22;WE=876941;WS=876918;set=Platypus	GT:AD:AF:DP	0/1:4,22:0.85:26
chr19	876933	.	C	G	729	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5011;HP=4;HapScore=1;MGOF=31;MMLQ=19;MQ=60.0;NF=22;NR=9;PP=729;QD=24.6377810499;SC=TGCCACAGGGCCCCCACCTGC;SbPval=0.55;Source=Platypus;TC=38;TCF=27;TCR=11;TR=31;WE=876941;WS=876918;set=Platypus	GT:AD:AF:DP	0/1:7,31:0.82:38
chr19	876933	.	C	CCCCCACCTGCCACGGGG	1813.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=69.76;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	880066	rs34799086	G	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	884782	rs2965294	C	G	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.246;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	885706	rs7253460	G	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	885818	rs1060442	A	G	10639.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr19	897571	rs3746149	G	C	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr19	899444	rs2965284	C	T	8099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=0.587;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:185,379:0.67:564
chr19	913044	rs199619192	G	GC	580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-0.739;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr19	913048	rs1683587	G	C	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.809;QD=24.44;ReadPosRankSum=-2.169;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr19	917526	rs10407968	A	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr19	920170	rs350131	G	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.674;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=8.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.808;SOR=2.001;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	920642	rs350132	T	A	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	929678	rs3826948	G	A	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	929753	rs1799595	A	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	932466	.	TGAG	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.458;QD=0.56;ReadPosRankSum=2.428;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:106,10:0.09:116
chr19	960187	rs1637993	G	C	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.137;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	960266	rs1683584	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr19	964434	rs2240615	G	A	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:64,101:0.61:165
chr19	965043	rs12608658	T	C	9956.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr19	966458	rs71335324	CA	C	201.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.668;QD=7.48;ReadPosRankSum=1.262;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr19	966693	rs6510986	C	T	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:109,199:0.65:308
chr19	968318	rs8105235	C	T	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-1.013;QD=16.67;ReadPosRankSum=-0.895;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr19	968345	rs7251219	CA	TG	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr19	971933	rs1051504	A	G	5780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.286;QD=22.32;ReadPosRankSum=4.488;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:107,152:0.59:259
chr19	971949	rs1051505	G	A	6412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.394;QD=23.07;ReadPosRankSum=3.285;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:104,174:0.63:278
chr19	984218	rs8112598	C	T	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	984537	rs61732720	A	G	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:85,102:0.55:187
chr19	984618	rs75214262	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr19	985997	rs2074574	C	G	9339.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:1,360:1.00:361
chr19	989730	rs2240147	C	A	4380.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:154,244:0.61:398
chr19	990185	rs10409367	G	C	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	990238	rs117300378	C	T	6058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=-0.277;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:187,294:0.61:481
chr19	990281	rs2158367	G	A	21357.77	.	AC=2;AF=1.00;AN=2;DB;DP=831;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,823:1.00:823
chr19	990394	rs2240148	T	C	3371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.224;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:273,190:0.41:463
chr19	990736	rs2365709	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	990819	rs2240149	G	A	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:223,128:0.36:351
chr19	991063	rs2240150	A	C	3820.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:93,175:0.65:268
chr19	991129	rs11538683	G	A	3801.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:93,170:0.65:263
chr19	991196	rs60416441	CGTCCCAG	CCCCAG,C	14289.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=321;set=Intersection	GT:AF:DP	1/1:1.00:314
chr19	991199	rs201372013	CCCAGG	C	14292.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.39;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	991204	.	G	C	2762	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=1;HapScore=1;MGOF=10;MMLQ=26;MQ=59.98;NF=81;NR=70;PP=2762;QD=20;SC=CACGTCCCAGGTGACCCCTGT;SbPval=0.62;Source=Platypus;TC=170;TCF=88;TCR=82;TR=151;WE=991212;WS=991186;set=Platypus	GT:AD:AF:DP	1/1:19,151:0.89:170
chr19	991374	rs77430782	C	T	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:58,117:0.67:175
chr19	991892	rs71335285	T	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	991968	rs1127043	T	C	12874.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,493:1.00:493
chr19	1000799	rs2301813	G	C	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.276;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr19	1003158	rs35163060	C	T	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=5.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=1.232;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:74,30:0.29:104
chr19	1003221	rs35592366	C	A	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-0.161;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:89,45:0.34:134
chr19	1003374	rs34585248	G	A	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.071;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:204,99:0.33:303
chr19	1003808	rs2240155	A	G	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.930;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:101,37:0.27:138
chr19	1003824	rs12972813	G	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=1.030;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:79,30:0.28:109
chr19	1004687	rs12978900	T	C	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:341,167:0.33:508
chr19	1004710	rs4807399	C	T	9132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=-0.650;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:207,423:0.67:630
chr19	1004740	rs2240157	T	C	22046.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,863:1.00:863
chr19	1004844	rs4806909	T	C	4355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=722;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=-0.060;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:454,250:0.36:704
chr19	1005230	rs2240158	C	T	3836.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:432,211:0.33:643
chr19	1005531	rs12973948	G	C	2450.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:274,136:0.33:410
chr19	1005598	rs11671828	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:95,31:0.25:126
chr19	1008358	rs10403909	A	G	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	1009365	rs10417824	T	A	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	1009485	rs10401245	C	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	1009550	rs142516571	GGCCCCCGCGGAGGCCCCACCACACTCT	G	263.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:68,12:0.15:80
chr19	1009585	rs10401454	C	G	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:23,65:0.74:88
chr19	1010406	rs62131162	G	A	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr19	1010691	rs2240159	A	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	1010908	rs7248769	A	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=0.284;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr19	1010908	.	AGT	GGC	179	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=23;MQ=60.0;NF=2;NR=6;PP=179;QD=29.0584843578;SC=CGGGAGGGAGAGTGGGAGTCA;SbPval=0.89;Source=Platypus;TC=36;TCF=15;TCR=21;TR=8;WE=1010918;WS=1010898;set=Platypus	GT:AD:AF:DP	0/1:28,8:0.22:36
chr19	1010910	rs7252527	T	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=0.718;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr19	1011338	rs34750262	C	T	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr19	1011823	rs2240161	A	G	17019.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.92;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,517:1.00:517
chr19	1011846	rs10420656	T	C	8357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=2.237;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:433,231:0.35:664
chr19	1011856	rs113138803	C	A	8683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=782;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=1.926;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:496,258:0.34:754
chr19	1012120	rs7145	G	A	6723.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:166,306:0.65:472
chr19	1012379	rs2240162	C	G	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=1.823;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	1012379	.	CGT	GGC	1585	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=5;HapScore=1;MGOF=31;MMLQ=23;MQ=60.0;NF=30;NR=10;PP=1585;QD=40.9616968716;SC=CACAGCCCCCCGTCCCGCACC;SbPval=0.6;Source=Platypus;TC=42;TCF=31;TCR=11;TR=40;WE=1012389;WS=1012369;set=Platypus	GT:AD:AF:DP	1/1:2,40:0.95:42
chr19	1012381	rs2240163	T	C	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.40;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	1012416	rs112926823	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:96,40:0.29:136
chr19	1012440	rs11672715	A	C	3341.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:53,150:0.74:203
chr19	1012611	rs970100	A	C	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	1012639	rs62131163	A	G	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:40,103:0.72:143
chr19	1013148	rs3815170	G	A	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:66,153:0.70:219
chr19	1014377	rs1058506	A	G	2933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.519;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=-1.277;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:78,135:0.63:213
chr19	1014398	rs7146	A	G	6832.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.66;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	1014537	rs67806247	ACGTGATGGGG	A	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	1020673	rs1005504	C	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	1031212	rs7247087	A	G	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr19	1031329	rs56707950	G	A	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=-0.819;QD=23.99;ReadPosRankSum=1.079;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr19	1031338	.	G	GGGGGGGA	60.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.455;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=0.140;QD=2.53;ReadPosRankSum=-1.068;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr19	1031339	.	G	GGGGGGA	602.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.422;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=4.471;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.705;QD=25.11;ReadPosRankSum=1.304;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr19	1031340	rs12978059	C	G	996.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=49.84;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	1032369	rs10401325	C	T	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	1032474	rs62131196	G	T	5601.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:117,267:0.70:384
chr19	1032702	rs4315451	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.183;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-1.820;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr19	1032756	rs55784632	C	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr19	1032871	rs4630683	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	1036018	rs930232	G	A	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	1036444	rs930231	G	A	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:166,78:0.32:244
chr19	1036552	rs2304262	T	C	33739.77	.	AC=2;AF=1.00;AN=2;DB;DP=1333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=25.93;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,1301:1.00:1301
chr19	1037715	rs200177867	T	C	702.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-4.483;QD=13.01;ReadPosRankSum=-0.344;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr19	1037716	rs201532581	G	A	702.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-4.599;QD=12.55;ReadPosRankSum=0.150;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr19	1037718	rs199741851	G	T	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-4.599;QD=12.28;ReadPosRankSum=0.150;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr19	1037731	rs75808449	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,19:0.26:73
chr19	1037749	rs77454210	G	A	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-5.207;QD=8.09;ReadPosRankSum=-1.418;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr19	1037756	rs77830704	G	A	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.790;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-5.288;QD=8.37;ReadPosRankSum=-2.275;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr19	1037766	rs78386506	G	A	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.458;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-6.169;QD=7.72;ReadPosRankSum=-2.172;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:65,19:0.23:84
chr19	1037781	rs75676484	C	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-6.942;QD=6.73;ReadPosRankSum=-1.164;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr19	1037791	rs75577125	C	T	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-7.745;QD=6.11;ReadPosRankSum=-0.055;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:68,17:0.20:85
chr19	1037801	rs78797154	A	C	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-7.426;QD=5.56;ReadPosRankSum=1.047;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr19	1037807	rs78288829	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-7.110;QD=6.21;ReadPosRankSum=1.242;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr19	1037810	rs80117328	G	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-7.002;QD=6.51;ReadPosRankSum=1.559;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr19	1037812	rs79770201	T	C	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-7.002;QD=6.59;ReadPosRankSum=1.525;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr19	1037828	rs75602230	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-6.428;QD=8.09;ReadPosRankSum=1.563;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:46,16:0.26:62
chr19	1037833	rs80286396	C	A	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.578;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-6.003;QD=8.32;ReadPosRankSum=1.801;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr19	1037842	rs79061930	G	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-5.547;QD=9.43;ReadPosRankSum=2.186;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr19	1037844	rs74612849	A	G	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.791;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-5.483;QD=8.06;ReadPosRankSum=1.920;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr19	1037848	rs76751843	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-5.351;QD=8.45;ReadPosRankSum=1.538;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr19	1037856	rs76549406	T	C	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-4.998;QD=8.49;ReadPosRankSum=1.694;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr19	1037869	rs75014171	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-4.857;QD=9.28;ReadPosRankSum=1.377;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr19	1037869	.	CCC	TCA	1104	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=4;HapScore=2;MGOF=52;MMLQ=22;MQ=56.82;NF=3;NR=7;PP=1104;QD=115.746787486;SC=CTGAATATCCCCCTTACTACC;SbPval=0.73;Source=Platypus;TC=31;TCF=11;TCR=20;TR=10;WE=1037879;WS=1037818;set=Platypus	GT:AD:AF:DP	0/1:21,10:0.32:31
chr19	1037871	rs78251590	C	A	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-4.778;QD=9.53;ReadPosRankSum=1.228;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr19	1037932	rs3848639	G	C	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	1042809	rs3764645	A	G	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:131,69:0.34:200
chr19	1043103	rs72973581	G	A	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:200,100:0.33:300
chr19	1043864	rs4622634	G	C	1694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.737;QD=5.86;ReadPosRankSum=-0.273;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:186,103:0.36:289
chr19	1044753	rs3764648	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.498;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr19	1047002	rs3752234	A	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:191,79:0.29:270
chr19	1047161	rs3752237	A	G	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	0/1:507,235:0.32:742
chr19	1049012	rs4147912	A	C	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	1049471	.	C	CCA	1990	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=6;HapScore=2;MGOF=22;MMLQ=27;MQ=59.46;NF=0;NR=46;PP=1990;QD=43.7173913043;SC=CGTGAGCCCCCCCACTCCCAC;SbPval=1.0;Source=Platypus;TC=57;TCF=1;TCR=56;TR=46;WE=1049499;WS=1049461;set=Platypus	GT:AD:AF:DP	1/0:11,46:0.81:57
chr19	1049480	.	A	T	1594	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=7;HapScore=2;MGOF=22;MMLQ=26;MQ=59.38;NF=9;NR=19;PP=1594;QD=58.1704004481;SC=CCCCACTCCCACCCCGTGAGC;SbPval=0.68;Source=Platypus;TC=76;TCF=27;TCR=49;TR=28;WE=1049499;WS=1049461;set=Platypus	GT:AD:AF:DP	1/0:48,28:0.37:76
chr19	1049489	.	GC	G	1863	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=7;HapScore=2;MGOF=22;MMLQ=24;MQ=57.98;NF=0;NR=40;PP=1863;QD=47.1;SC=CACCCCGTGAGCCCCCCCACC;SbPval=1.0;Source=Platypus;TC=43;TCF=0;TCR=43;TR=40;WE=1049499;WS=1049461;set=Platypus	GT:AD:AF:DP	1/0:3,40:0.93:43
chr19	1049490	.	C	CT	2976	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=6;HapScore=2;MGOF=22;MMLQ=24;MQ=58.22;NF=0;NR=40;PP=2976;QD=20;SC=ACCCCGTGAGCCCCCCCACCA;SbPval=1.0;Source=Platypus;TC=43;TCF=0;TCR=43;TR=40;WE=1049499;WS=1049461;set=Platypus	GT:AD:AF:DP	0/1:3,40:0.93:43
chr19	1049491	.	C	G	1802	.	AC=2;AF=1.00;AN=2;BRF=0.69;FR=1.0000;HP=6;HapScore=2;MGOF=22;MMLQ=24;MQ=58.33;NF=8;NR=39;PP=1802;QD=39.0802385648;SC=CCCCGTGAGCCCCCCCACCAC;SbPval=0.91;Source=Platypus;TC=57;TCF=15;TCR=42;TR=47;WE=1049499;WS=1049461;set=Platypus	GT:AD:AF:DP	1/1:10,47:0.82:57
chr19	1050781	rs145363837	AAATAATAATAATAAT	A	206.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-0.000;QD=22.97;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	1050836	rs55999131	T	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=0.794;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr19	1050874	rs12151021	A	G	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.36;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	1051214	rs3752240	A	G	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:129,69:0.35:198
chr19	1051370	.	TACTGAGGTCCACGTGGGTAGGCAACCTTGCCCAAGGCTGGGTGTGACAC	T	532	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=3;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=0;NR=1;PP=532;QD=575.0;SC=GGAAGCCGGGTACTGAGGTCC;SbPval=1.0;Source=Platypus;TC=4;TCF=1;TCR=3;TR=1;WE=1051426;WS=1051360;set=Platypus	GT:AD:AF:DP	0/1:3,1:0.25:4
chr19	1051751	rs3764651	A	G	85.85	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr19	1052005	rs3764652	C	T	3858.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:94,178:0.65:272
chr19	1053299	rs3829687	C	T	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	1053524	rs3752241	C	G	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:70,132:0.65:202
chr19	1053575	rs9282559	T	G	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:38,97:0.72:135
chr19	1053677	rs3752242	G	A	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:38,86:0.69:124
chr19	1054060	rs3752243	A	G	10598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=1.578;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:238,489:0.67:727
chr19	1055191	rs3745842	G	A	5862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=-0.296;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:135,276:0.67:411
chr19	1056018	rs3833881	GC	G	5835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.921;QD=15.86;ReadPosRankSum=0.664;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:138,230:0.62:368
chr19	1056065	rs881768	A	G	4367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=3.558;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.186;QD=12.81;ReadPosRankSum=-0.085;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:140,201:0.59:341
chr19	1056492	rs3752246	G	C	21088.77	.	AC=2;AF=1.00;AN=2;DB;DP=799;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,794:1.00:794
chr19	1059004	rs2279796	A	G	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:66,107:0.62:173
chr19	1061698	rs11420923	C	CA	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.949;QD=5.96;ReadPosRankSum=-0.907;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:37,36:0.49:73
chr19	1062370	rs34606911	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr19	1063930	rs4807499	C	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:82,49:0.37:131
chr19	1064193	rs4147930	G	A	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	1064453	rs4147931	G	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr19	1065018	rs4147934	G	T	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	1065044	rs4147935	C	T	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr19	1065197	rs4147936	G	C	6773.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	1066256	rs4147938	G	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	1068734	rs3764653	T	C	11778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.90;ReadPosRankSum=-1.624;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:173,300:0.63:473
chr19	1068738	rs1801284	G	A	11719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.48;ReadPosRankSum=-1.368;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:168,292:0.63:460
chr19	1071312	rs4807506	C	T	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	1073409	rs2074441	C	G	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	1074000	rs2074442	A	T	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	1074064	rs12610818	C	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	1074252	rs11084881	T	G	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	1077985	rs7251797	A	G	4121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.643;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:118,190:0.62:308
chr19	1078101	rs72975505	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:67,22:0.25:89
chr19	1080189	rs2074453	G	C	13988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0.000;DB;DP=1029;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-0.576;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:327,663:0.67:990
chr19	1080311	rs2074454	G	C	21840.77	.	AC=2;AF=1.00;AN=2;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,846:1.00:846
chr19	1081120	rs8113708	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	1081462	rs34275968	C	CG	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.945;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr19	1081617	rs10404947	A	G	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	1085509	.	T	TCCATCTCTCCTGTCTCTCC	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=10.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=-0.475;SOR=2.897;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr19	1085528	rs147365366	C	CT	2350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.767;QD=22.18;ReadPosRankSum=0.471;SOR=1.180;set=HC	GT:AD:AF:DP	0/1:38,68:0.64:106
chr19	1085966	rs3761028	A	G	12388.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr19	1086043	rs3761026	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr19	1090020	rs61585798	TG	T	2085.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.232;QD=27.81;ReadPosRankSum=-1.271;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:1,74:0.99:75
chr19	1090803	rs3787016	A	G	7243.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	1094004	rs12459404	G	A	11715.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.47;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,460:1.00:460
chr19	1109595	rs185032569	G	T	1971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-2.365;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:232,120:0.34:352
chr19	1113523	rs112914802	G	T	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.964;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:98,62:0.39:160
chr19	1122678	.	C	T	8292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=13.48;ReadPosRankSum=0.030;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:216,399:0.65:615
chr19	1128312	rs10412207	A	G	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:33,76:0.70:109
chr19	1147430	rs372686808	AT	A	134.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.735;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr19	1147431	rs56808651	T	C	552.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-0.450;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,34:0.76:45
chr19	1147432	.	G	C	143.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.567;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr19	1147546	rs79899115	C	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.90;ReadPosRankSum=0.834;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	1268178	rs12975875	G	A	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	1270231	rs56378951	GC	G	1482.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:4,59:0.94:63
chr19	1271274	rs12609287	C	T	13055.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr19	1271529	rs4807050	C	T	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	1272040	rs12488	T	C	8341.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr19	1274539	rs8108009	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	1277070	rs72979542	G	T	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:33,77:0.70:110
chr19	1277275	rs757292	G	C	6765.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	1278861	rs12460305	C	T	6873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-0.436;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:162,316:0.66:478
chr19	1295989	.	GTGGGGCCAGGGGGGAGTGGGCGGGGCCGCGGAA	G	509	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=23;MQ=60.72;NF=0;NR=4;PP=509;QD=135.5;SC=GGGCCGCGGTGTGGGGCCAGG;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=4;WE=1296029;WS=1295979;set=Platypus	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	1354983	rs10555657	AGCG	A	1225.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;QD=43.78;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	1357082	rs713042	T	C	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	1358726	rs2285972	C	T	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	1360575	rs3826942	G	A	9460.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	1364306	rs17673260	A	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	1366179	rs72377165	CGCTGGGGTCACCCCCAGA	C	2947.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	1366422	rs2668418	C	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	1370675	rs12608765	C	G	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	1370742	rs34502536	G	A	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,49:0.42:116
chr19	1383649	rs3848638	G	T	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	1384021	rs113443464	G	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr19	1388538	rs1142530	C	T	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	1389064	rs7258846	G	T	21915.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.563;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.44;ReadPosRankSum=-0.762;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:1,828:1.00:829
chr19	1389324	rs66919466	ACT	A	10644.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:9,288:0.97:297
chr19	1389517	rs11666067	C	A	12206.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,479:1.00:479
chr19	1391235	rs2074897	G	A	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	1407618	.	A	AGCCGCC	1004.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=41.86;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	1422299	rs2271055	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:57,24:0.30:81
chr19	1453705	rs12985827	T	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	1454985	rs151028539	ACC	A	64.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	1455933	rs146334923	C	CAGAGTCAGAGCCCAGGGCGAAGTCATCCCAGGA	1011.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr19	1456544	rs2656869	A	G	142.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.76;ReadPosRankSum=-0.887;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr19	1456730	rs3896893	G	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr19	1457875	rs12005	G	A	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.05;ReadPosRankSum=1.251;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr19	1457894	rs67685730	C	CGGGGGGGGG	593.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	1467684	rs265273	A	C	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	1487083	rs4807119	C	T	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:105,249:0.70:354
chr19	1487561	rs62128466	C	G	2886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.190;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=0.792;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:398,194:0.33:592
chr19	1488147	rs4807120	C	T	8913.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	1489817	rs12972390	C	T	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:176,85:0.33:261
chr19	1495245	.	G	T	3775.77	.	AC=1;AF=0.500;AN=2;DP=328;set=Intersection	GT:AD:AF:DP	0/1:135,186:0.58:321
chr19	1507535	rs791461	T	C	4039.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:107,176:0.62:283
chr19	1508737	rs55810939	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:61,29:0.32:90
chr19	1508757	rs56135389	G	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr19	1510661	rs265291	A	G	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr19	1511435	rs12976420	G	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr19	1526931	rs2656858	A	C	14031.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.03;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,539:1.00:539
chr19	1527051	rs11288093	CG	C	5788.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	1528149	rs139924905	C	CGGCGTGGGGTCCCT	1206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=12.224;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.127;QD=26.23;ReadPosRankSum=0.993;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:17,29:0.63:46
chr19	1528231	rs2668408	T	C	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=25.96;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	1528360	.	AC	A	9893.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;ClippingRankSum=0.000;DP=709;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.324;QD=15.08;ReadPosRankSum=-0.682;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:284,372:0.57:656
chr19	1528780	rs2656861	A	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr19	1529527	rs2668409	G	C	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.07;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	1529550	rs2656863	A	G	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	1530015	rs2668410	C	G	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	1533869	rs61257352	GT	G	905.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.48;ReadPosRankSum=-0.325;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	1533870	rs265286	T	G	249.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=0.000;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr19	1533871	rs201797915	GGGGGCGAGGGGT	G	903.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.04;ReadPosRankSum=-0.433;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr19	1533972	rs11084897	C	G	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:73,116:0.61:189
chr19	1534042	rs10853954	T	C	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:73,136:0.65:209
chr19	1534156	.	A	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.382;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr19	1534191	rs10775585	C	T	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr19	1534215	rs11084899	T	C	1025.78	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr19	1535084	rs12984316	G	A	3848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.064;QD=13.05;ReadPosRankSum=2.812;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:110,185:0.63:295
chr19	1535179	rs55953917	G	A	5692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-3.405;QD=8.07;ReadPosRankSum=2.441;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:401,304:0.43:705
chr19	1535193	rs58035688	GCCC	G	16068.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.232;QD=22.57;ReadPosRankSum=-0.318;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:310,402:0.56:712
chr19	1535205	rs265282	G	C	16555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.311;QD=22.19;ReadPosRankSum=-1.021;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:309,437:0.59:746
chr19	1535291	rs12462146	G	A	5226.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:144,253:0.64:397
chr19	1535349	rs265281	G	A	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	1555434	rs200001023	A	AC	3614.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr19	1575410	.	T	TA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=4.524;QD=0.36;ReadPosRankSum=1.063;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:93,19:0.17:112
chr19	1578371	rs371220154	GCTC	G	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-3.923;QD=1.95;ReadPosRankSum=-0.618;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:154,20:0.11:174
chr19	1605543	.	C	G	256	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=2;HapScore=2;MGOF=42;MMLQ=23;MQ=59.64;NF=0;NR=15;PP=256;QD=19.3847475031;SC=CGCCACTGTGCGCGCAGACCC;SbPval=1.0;Source=Platypus;TC=48;TCF=2;TCR=46;TR=15;WE=1605551;WS=1605533;set=Platypus	GT:AD:AF:DP	0/1:33,15:0.31:48
chr19	1611856	rs62130064	G	A	1885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.176;QD=7.57;ReadPosRankSum=1.509;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:148,101:0.41:249
chr19	1615852	rs41275838	C	T	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=3.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.553;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:232,81:0.26:313
chr19	1619333	rs1140828	G	A	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	1619339	rs8140	T	C	2386.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.40;ReadPosRankSum=-1.123;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:2,100:0.98:102
chr19	1619348	rs1052696	G	A	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.689;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.26;ReadPosRankSum=-0.948;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:40,54:0.57:94
chr19	1619350	rs1052692	C	T	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=-1.683;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:35,54:0.61:89
chr19	1619749	rs10648013	A	AGGGTG	2976.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	1624007	rs55677929	A	G	12303.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr19	1625811	rs11084904	T	C	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	1650134	rs1860661	A	G	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	1650350	rs117161937	G	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-1.379;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr19	1753589	rs112596908	C	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	1775123	rs79565776	T	TCGCC	3716.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	1783261	rs2385387	C	T	4977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=2.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=-0.209;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:90,230:0.72:320
chr19	1784890	rs3764605	A	G	2738.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:99,134:0.58:233
chr19	1784944	rs3764606	A	G	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:53,80:0.60:133
chr19	1785772	rs8110462	T	C	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:29,72:0.71:101
chr19	1789556	rs12978609	C	T	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.697;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:158,87:0.36:245
chr19	1792190	rs2286004	A	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr19	1795783	.	TACAC	T	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=30.885;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.097;QD=16.25;ReadPosRankSum=0.738;SOR=5.669;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	1799763	.	C	CA	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.986;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:63,22:0.26:85
chr19	1806083	rs56193578	A	C	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-1.735;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:198,88:0.31:286
chr19	1806210	rs7252063	A	C	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	1806463	rs28397595	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr19	1807136	rs59572086	C	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:127,75:0.37:202
chr19	1809836	rs8107742	T	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr19	1810605	rs716993	T	C	8078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-0.932;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:172,377:0.69:549
chr19	1811405	rs144582259	C	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr19	1811547	rs12609187	A	G	12173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474;ClippingRankSum=0.000;DB;DP=989;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=0.408;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:369,611:0.62:980
chr19	1817134	.	C	CCCAGATGGGG	1381.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr19	1818459	rs1610106	A	G	1276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.25;ReadPosRankSum=1.175;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:15,59:0.80:74
chr19	1818952	rs893538	C	G	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr19	1819234	rs113598561	ACT	A	2783.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:38,78:0.67:116
chr19	1821637	rs4807145	A	G	4721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=3.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-0.881;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:103,217:0.68:320
chr19	1863628	rs112570276	A	C	168.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.35;ReadPosRankSum=-0.660;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr19	1914795	rs11666645	C	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	1914940	rs11084918	A	G	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	1915118	rs10853957	A	C	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	1918023	rs10415845	T	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	1924050	rs4807170	T	C	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:26,79:0.75:105
chr19	1924076	rs7255232	TC	CT	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;JOINED;set=Intersection	GT:AD:AF:DP	0/1:128,58:0.31:186
chr19	1952841	rs2396366	T	C	3024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.285;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:402,189:0.32:591
chr19	1954126	rs34622118	C	CA	5041.73	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:301,144:0.32:445
chr19	1954128	rs34797288	T	C	5050.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:296,141:0.32:437
chr19	2015540	.	GGGCGGC	G	233.79	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.87;QD=38.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	2037630	rs369022164	GT	G	192.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.233;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr19	2037959	rs181808315	T	C	79.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	2041032	rs2287003	T	C	9431.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr19	2042886	rs7253052	A	G	4774.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	2043271	rs2302585	G	A	6758.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	2050823	rs3746101	G	T	7940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.824;QD=11.48;ReadPosRankSum=0.681;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:281,411:0.59:692
chr19	2073466	rs758145	T	C	18347.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,716:1.00:716
chr19	2078409	rs2074893	A	G	12980.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr19	2078488	rs2074894	T	C	8767.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr19	2096858	rs115935302	C	T	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr19	2097416	rs116274260	GA	TC	25115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=0.000;DB;DP=1036;ExcessHet=3.0103;FS=0.532;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.48;ReadPosRankSum=-0.857;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:396,630:0.61:1026
chr19	2097641	rs115783655	T	C	5836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.904;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:152,271:0.64:423
chr19	2097832	rs12104154	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr19	2097986	rs7250336	T	C	8080.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:167,358:0.68:525
chr19	2098015	rs7253456	T	C	10983.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:246,514:0.68:760
chr19	2098063	rs45506200	A	T	6014.77	.	AC=1;AF=0.500;AN=2;DB;DP=1143;set=Intersection	GT:AD:AF:DP	0/1:762,367:0.33:1129
chr19	2098216	rs116108188	C	A	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:70,123:0.64:193
chr19	2098237	rs144499044	C	T	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:50,90:0.64:140
chr19	2098864	rs58783004	AG	A	13160.73	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr19	2099250	rs11668205	G	A	2313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=1.424;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:310,144:0.32:454
chr19	2109019	rs2072306	T	C	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:94,49:0.34:143
chr19	2110019	rs2074958	T	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:101,48:0.32:149
chr19	2110746	rs20567	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:100,65:0.39:165
chr19	2111649	rs2074959	T	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr19	2113273	rs2240651	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	2113518	rs2240652	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr19	2115493	rs2066775	A	G	2812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.716;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.804;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:387,184:0.32:571
chr19	2116281	rs2240656	T	C	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=0.845;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:183,107:0.37:290
chr19	2116400	rs9676693	C	T	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=-0.250;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:103,65:0.39:168
chr19	2116466	rs734727	G	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr19	2116833	rs2240657	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=1.044;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr19	2123516	rs2072304	A	G	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-1.999;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:77,48:0.38:125
chr19	2123712	rs2072305	G	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr19	2123754	rs183190198	G	T	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:45,71:0.61:116
chr19	2127272	rs4807203	A	G	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.182;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:154,54:0.26:208
chr19	2128987	.	GCC	ACA	1075	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=7;HapScore=1;MGOF=66;MMLQ=27;MQ=56.4;NF=18;NR=7;PP=1075;QD=45.1387149945;SC=GCCCGCCCCCGCCGCTCCGAC;SbPval=0.93;Source=Platypus;TC=35;TCF=20;TCR=15;TR=25;WE=2128997;WS=2128971;set=Platypus	GT:AD:AF:DP	1/1:10,25:0.71:35
chr19	2128989	rs58813039	C	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	2194657	rs4807212	C	T	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=-0.672;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:13,33:0.72:46
chr19	2194660	rs11268058	A	ATGTTGGCACATGGC	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.70;ReadPosRankSum=0.562;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	2208859	rs2301799	T	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr19	2211050	rs2301800	C	T	8872.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:231,403:0.64:634
chr19	2214057	rs2074552	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	2220720	rs78566095	G	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	2221792	rs12462556	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr19	2221892	rs79712071	C	A	2418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-1.318;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:268,145:0.35:413
chr19	2226676	rs3815308	G	A	3888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=0.560;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:75,174:0.70:249
chr19	2243336	rs147872814	C	G	6739.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:168,325:0.66:493
chr19	2244849	rs45486197	G	A	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,58:0.40:145
chr19	2244903	rs6510652	T	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	2245622	rs45521740	G	A	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=0.117;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:67,47:0.41:114
chr19	2246652	rs2074861	G	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	2249477	rs10407022	G	T	5741.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	2250528	rs8112524	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr19	2251512	rs7252789	T	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	2251817	rs10417628	T	C	16518.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr19	2252990	rs80043033	C	G	5467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=0.100;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:150,265:0.64:415
chr19	2253590	rs3746158	C	T	7205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=-0.216;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:154,344:0.69:498
chr19	2255336	rs886363	A	G	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:29,66:0.69:95
chr19	2269539	.	C	T	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=3.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=0.276;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:54,28:0.34:82
chr19	2271282	rs2074457	T	C	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr19	2271323	rs2523175	A	G	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:37,95:0.72:132
chr19	2271577	rs28384674	CT	C	2817.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:51,94:0.65:145
chr19	2271741	rs2074458	G	A	3793.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:94,179:0.66:273
chr19	2290499	rs7258841	C	T	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:283,180:0.39:463
chr19	2324384	rs10404826	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	2328281	rs11666344	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	2337377	rs3752204	C	G	5860.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	2339949	rs3746285	T	C	15834.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.11;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr19	2339958	rs1609752	T	C	14794.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr19	2340046	rs3746287	C	T	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	2340154	rs5826760	G	GC	7080.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	2340235	rs12460384	C	T	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	2341047	rs55818311	C	T	6611.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,255:0.99:257
chr19	2341059	rs11880345	G	A	10815.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.31;QD=44.51;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	2341059	.	GT	AC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=2;HapScore=1;MGOF=160;MMLQ=23;MQ=65.49;NF=73;NR=59;PP=2947;QD=20;SC=GAGTCCTCGGGTGCACCAGGG;SbPval=0.6;Source=Platypus;TC=140;TCF=76;TCR=64;TR=132;WE=2341068;WS=2341037;set=Platypus	GT:AD:AF:DP	1/1:8,132:0.94:140
chr19	2341060	rs7245824	T	C	10815.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.44;QD=45.25;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	2341093	rs76166147	CCTCCCTGG	C	8500.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.12;QD=44.98;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	2341094	.	CTCCCTGGAG	ATCCCTGGAG	2976	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=41;MMLQ=24;MQ=68.16;NF=60,16;NR=55,55;PP=2207,2976;QD=19.4936627178;SC=ACTCCCTGCCCTCCCTGGAGG;SbPval=0.56;Source=Platypus;TC=121;TCF=62;TCR=59;TR=115,71;WE=2341110;WS=2341084;set=Platypus	GT:AD:AF:DP	0/1:6,115:0.95:121
chr19	2341094	.	CTCCCTGGAG	C	2976	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=41;MMLQ=24;MQ=68.16;NF=60,16;NR=55,55;PP=2207,2976;QD=19.4936627178;SC=ACTCCCTGCCCTCCCTGGAGG;SbPval=0.56;Source=Platypus;TC=121;TCF=62;TCR=59;TR=115,71;WE=2341110;WS=2341084;set=Platypus	GT:AD:AF:DP	0/1:1,71:0.99:72
chr19	2341102	rs202164106	AG	A	8497.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.39;QD=44.49;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	2363785	rs143993232	TGA	T	551.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	2363805	rs4807241	T	C	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=0.000;QD=19.53;ReadPosRankSum=2.292;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	2363821	rs114883707	T	A	465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=0.000;QD=16.06;ReadPosRankSum=1.831;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr19	2382603	rs145510194	G	GACAC	18520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.968;QD=25.72;ReadPosRankSum=0.868;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:252,468:0.65:720
chr19	2382678	rs148093377	TACAC	T	3265.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:60,85:0.59:145
chr19	2389872	rs891174	G	C	2811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-1.269;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:397,179:0.31:576
chr19	2389954	rs891175	G	A	2408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-0.555;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:226,79:0.26:305
chr19	2389958	rs891176	T	A	2415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.373;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:206,73:0.26:279
chr19	2506056	.	GA	G	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=0.301;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:35,22:0.39:57
chr19	2520716	rs1133692	T	C	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	2520791	rs3764585	C	A	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	2524360	rs138820550	T	C	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr19	2524477	rs4807289	T	C	8008.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr19	2524659	rs4807290	T	C	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=1.456;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:77,28:0.27:105
chr19	2524685	rs4807291	C	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=1.046;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr19	2524819	rs8111910	C	T	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-2.291;QD=9.18;ReadPosRankSum=3.006;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:100,38:0.28:138
chr19	2524824	rs8101230	T	G	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.464;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-2.268;QD=9.34;ReadPosRankSum=1.631;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:98,38:0.28:136
chr19	2524834	rs8111050	G	A	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=0.205;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:95,36:0.27:131
chr19	2524925	rs8112435	A	C	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	2538074	rs71337145	C	CAAACA	471.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr19	2538668	rs16989558	A	G	4297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=-1.008;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:77,209:0.73:286
chr19	2538760	rs7250546	A	T	1487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.961;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=0.527;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:30,68:0.69:98
chr19	2557312	rs76966814	GAC	G	11839.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr19	2557343	.	GCACACACACAGA	G	9629.73	.	AC=2;AF=1.00;AN=2;DP=400;set=Intersection	GT:AD:AF:DP	1/1:2,389:0.99:391
chr19	2576272	rs1029753	T	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:94,48:0.34:142
chr19	2717256	rs3745812	C	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.445;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:198,41:0.17:239
chr19	2717880	rs7343093	A	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=1.705;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:75,36:0.32:111
chr19	2732741	rs9160	G	A	2162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-0.100;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:73,102:0.58:175
chr19	2732986	rs759073	T	C	5838.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:154,254:0.62:408
chr19	2755339	rs2238614	G	A	7282.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	2761334	rs3745813	C	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	2761358	rs3745814	G	A	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	2761603	rs3745815	C	T	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	2762395	rs45459194	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr19	2762585	rs2302491	A	C	11725.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,468:1.00:468
chr19	2765328	rs2302494	G	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	2767192	rs1128925	G	T	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr19	2790394	rs1736176	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	2796021	rs1736180	G	A	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	2807375	rs1640274	G	A	246.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	2810248	rs1736184	G	A	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	2811788	rs2004186	T	C	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:5,51:0.91:56
chr19	2812153	rs941407	A	G	9986.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	2813000	rs1736185	A	G	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	2819965	rs2741993	A	G	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	2820105	rs2537856	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	2833587	rs885705	C	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr19	2833802	rs867168	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:122,38:0.24:160
chr19	2833864	rs867169	G	A	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:126,57:0.31:183
chr19	2853566	rs10412087	A	G	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:291,129:0.31:420
chr19	2896818	rs8100809	C	T	8154.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	2896948	rs8104326	T	C	10545.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=44.50;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	2896953	rs8101379	A	G	10524.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=44.41;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	2900865	rs10420989	G	A	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	2900915	rs7255359	GA	AT	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	2900930	rs12981209	C	T	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	2901114	rs11279103	CGCCGAAGTCT	C	3557.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	2915738	rs2043336	T	A	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	2915814	.	CAG	C	504.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr19	2916048	rs2043335	T	A	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	2916358	rs34115054	C	CA	485.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	2917186	rs2288959	T	C	6239.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr19	2917287	rs2288958	C	A	7594.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr19	2917612	rs10410539	T	C	7694.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr19	2933480	rs3786948	C	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	2934282	rs3746073	T	C	5031.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	2936443	rs7251272	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	2936623	rs4807371	C	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	2939267	.	CACCACCCTTACCCAAGGAGGCA	C	3227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DP=281;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=62.40;MQRankSum=11.235;QD=11.53;ReadPosRankSum=-1.051;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:175,105:0.38:280
chr19	2939289	.	A	C	1351	.	AC=1;AF=0.500;AN=2;BRF=0.6;FR=0.5000;HP=1;HapScore=2;MGOF=15;MMLQ=26;MQ=61.72;NF=55;NR=25;PP=1351;QD=17.3221401568;SC=CCAAGGAGGCAAGGTTCCTGC;SbPval=0.38;Source=Platypus;TC=191;TCF=137;TCR=54;TR=80;WE=2939297;WS=2939279;set=Platypus	GT:AD:AF:DP	0/1:111,80:0.42:191
chr19	2939396	rs12609268	T	C	10573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;ClippingRankSum=0.000;DB;DP=1066;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=7.453;QD=9.98;ReadPosRankSum=1.219;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:748,312:0.29:1060
chr19	2939401	rs12610412	C	G	10708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=1090;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=4.444;QD=9.89;ReadPosRankSum=1.403;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:766,317:0.29:1083
chr19	2978135	rs445657	G	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.161;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:112,41:0.27:153
chr19	2980269	rs4807380	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr19	2981487	rs10407929	G	C	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-1.362;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:157,93:0.37:250
chr19	2991814	rs428113	T	C	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:224,103:0.31:327
chr19	2993946	rs35271493	G	A	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.079;QD=9.15;ReadPosRankSum=-2.417;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr19	2994107	rs34438430	C	CT	925.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr19	2994814	rs439808	T	C	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	2994837	rs401886	A	G	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:57,120:0.68:177
chr19	2994885	rs11084986	G	T	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:60,104:0.63:164
chr19	3000822	rs35046512	C	CT	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.015;QD=7.81;ReadPosRankSum=-1.053;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr19	3006236	rs3050847	A	AAT	2590.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:35,66:0.65:101
chr19	3009788	rs216284	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	3014647	rs1844880	C	A	3554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=1.415;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:92,173:0.65:265
chr19	3019660	rs12972232	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:99,54:0.35:153
chr19	3019899	rs72988931	T	C	4280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=1.416;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:140,218:0.61:358
chr19	3053802	rs425485	T	C	1361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-0.134;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:170,85:0.33:255
chr19	3055843	rs369522981	A	G	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:80,47:0.37:127
chr19	3056270	.	AAGG	A	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.242;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:70,8:0.10:78
chr19	3062857	rs11539938	T	C	4222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=1.088;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:133,202:0.60:335
chr19	3062986	rs56193569	C	G	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=6.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-0.757;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:53,49:0.48:102
chr19	3113305	rs1682811	G	C	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	3115124	rs10407783	C	T	7094.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr19	3119184	rs308046	T	G	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	3119405	rs370286	T	G	8868.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr19	3121299	rs201102241	A	AT	359.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr19	3136692	rs411210	T	C	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr19	3148552	rs111452853	C	G	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr19	3148819	rs8113569	G	T	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	3148869	rs74675399	G	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.859;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=6.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=1.005;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr19	3149990	rs170159	G	C	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	3150238	rs310680	A	G	10143.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr19	3151686	rs72983023	A	C	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:71,142:0.67:213
chr19	3155736	rs2074864	T	C	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:36,82:0.69:118
chr19	3157885	rs61758985	T	C	5727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.64;ReadPosRankSum=2.521;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:55,145:0.72:200
chr19	3157885	.	TAA	CAG	2687	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=26;MQ=60.0;NF=32;NR=49;PP=2687;QD=20;SC=CCAGGGTAAGTAATTCTAGAA;SbPval=0.58;Source=Platypus;TC=113;TCF=46;TCR=67;TR=81;WE=3157895;WS=3157875;set=Platypus	GT:AD:AF:DP	1/0:32,81:0.72:113
chr19	3157887	rs72983041	A	G	5727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.15;ReadPosRankSum=2.736;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:51,139:0.73:190
chr19	3157916	rs66509881	C	T	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:35,110:0.76:145
chr19	3273818	rs312928	T	C	6065.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	3278206	rs11879556	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	3284819	rs3746064	T	C	1782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.065;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:151,98:0.39:249
chr19	3285012	rs59656659	T	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.290;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:64,27:0.30:91
chr19	3285042	rs113646375	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr19	3293593	rs313784	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr19	3366532	.	C	CG	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.765;QD=2.20;ReadPosRankSum=0.447;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr19	3366786	rs3764589	G	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chr19	3381645	rs67426967	GC	G	9599.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.015;QD=20.13;ReadPosRankSum=0.762;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:176,301:0.63:477
chr19	3425107	rs145828739	C	A	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.668;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:339,148:0.30:487
chr19	3448869	rs4807473	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	3452683	rs8105687	A	G	15337.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,579:1.00:579
chr19	3478646	rs10413312	C	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	3480232	rs2240666	A	G	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=3.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-1.255;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr19	3480358	rs2074961	T	C	1727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.826;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:437,135:0.24:572
chr19	3526452	rs2286543	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:44,11:0.20:55
chr19	3526786	rs2286546	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	3533274	rs740681	G	A	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:89,55:0.38:144
chr19	3534842	rs10155	G	A	5815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.161;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:448,317:0.41:765
chr19	3538638	rs8644	G	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.432;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.516;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr19	3538646	rs114420443	A	G	500.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.603;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=7.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=0.437;SOR=2.027;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr19	3538647	rs113259909	C	CGTGGGTGCGTG	520.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.026;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=7.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=0.423;SOR=2.027;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr19	3538654	rs1128872	G	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:70,23:0.25:93
chr19	3539444	rs7258234	T	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	3543397	rs12608919	C	T	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.895;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:139,80:0.37:219
chr19	3543478	.	GC	G	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=3.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.396;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr19	3544971	rs12976454	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:117,61:0.34:178
chr19	3546502	rs78952285	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr19	3548057	rs6510759	T	C	3752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=721;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=1.167;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:472,234:0.33:706
chr19	3548313	rs2240752	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr19	3557005	rs1715092	A	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.48;ReadPosRankSum=-0.875;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	3576314	rs35766767	CCTT	C	21231.73	.	AC=2;AF=1.00;AN=2;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=44.42;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr19	3579000	rs1443	C	T	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	3589768	rs28532669	G	A	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:43,71:0.62:114
chr19	3589941	rs78077103	G	T	2913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=0.032;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:67,135:0.67:202
chr19	3595006	rs34486470	A	G	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr19	3595522	rs13306046	G	A	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:119,55:0.32:174
chr19	3595794	rs4523	A	G	8503.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr19	3600198	rs5748	C	T	3969.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:79,176:0.69:255
chr19	3600390	rs5745	G	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:256,122:0.32:378
chr19	3610502	rs740349	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.338;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	3611146	rs2074786	A	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:109,65:0.37:174
chr19	3611186	rs758016	C	T	3509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=7.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=1.029;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:186,98:0.35:284
chr19	3611190	rs758017	C	A	3566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=7.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=1.240;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:199,104:0.34:303
chr19	3611428	rs2074788	C	T	333.28	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr19	3611765	rs2369188	A	G	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:2,287:0.99:289
chr19	3611972	rs2158935	G	A	4286.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:450,248:0.36:698
chr19	3612683	rs73920175	G	A	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-2.011;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:87,42:0.33:129
chr19	3612914	rs6510763	T	C	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	3613346	rs2074789	G	A	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:98,71:0.42:169
chr19	3613400	rs2240504	C	G	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:109,79:0.42:188
chr19	3613422	rs2074790	G	A	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:131,85:0.39:216
chr19	3613596	rs57918402	A	G	9628.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr19	3614403	rs7255692	T	C	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	3614538	rs60651483	C	T	10203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=837;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=2.586;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:330,501:0.60:831
chr19	3618928	rs3746125	G	A	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:87,112:0.56:199
chr19	3621070	rs73920181	G	A	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.553;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:80,29:0.27:109
chr19	3623229	rs7252821	A	T	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	3623444	rs58547709	A	G	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr19	3623505	rs7252742	C	T	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	3623534	rs7253265	A	G	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:67,106:0.61:173
chr19	3626476	rs4806945	T	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	3637380	rs10402336	C	T	8678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.779;QD=12.86;ReadPosRankSum=-1.261;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:256,419:0.62:675
chr19	3637395	rs10408855	T	C	21195.77	.	AC=2;AF=1.00;AN=2;DB;DP=818;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,814:1.00:814
chr19	3638041	rs1879038	G	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	3638856	rs2286435	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr19	3641672	rs3815338	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chr19	3644062	rs73920196	G	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr19	3644337	rs10413486	G	A	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:15,53:0.78:68
chr19	3645947	rs12460780	G	A	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:297,174:0.37:471
chr19	3647440	rs4806948	A	G	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	3648545	.	GCTGCAGACCCGGGCGCCCACCTGTGGGA	G	1318.73	.	AC=1;AF=0.500;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	0/1:55,63:0.53:118
chr19	3648599	rs72620514	A	G	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:94,119:0.56:213
chr19	3653525	rs2074957	C	T	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:228,106:0.32:334
chr19	3656652	rs10432303	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr19	3660944	rs3826944	G	A	5181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=849;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.580;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:540,305:0.36:845
chr19	3661719	rs66697450	G	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr19	3665058	rs74471407	G	A	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr19	3667460	rs74964157	C	T	1459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=-0.225;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:29,61:0.68:90
chr19	3667460	.	CT	TC	665	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=23;MQ=59.93;NF=6;NR=30;PP=665;QD=19.9574409684;SC=GTGTGTAACTCTGCGTGGGGC;SbPval=0.87;Source=Platypus;TC=61;TCF=15;TCR=46;TR=36;WE=3667469;WS=3667450;set=Platypus	GT:AD:AF:DP	0/1:25,36:0.59:61
chr19	3667461	rs7257360	T	C	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.39;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	3728535	rs144859096	T	A	7238.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:177,342:0.66:519
chr19	3729989	rs116985866	C	T	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:58,115:0.66:173
chr19	3730041	rs7258176	C	T	6455.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:165,304:0.65:469
chr19	3730169	rs45580639	C	T	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:337,173:0.34:510
chr19	3730754	rs117091984	C	T	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:63,106:0.63:169
chr19	3731985	rs1879040	G	A	6591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.15;ReadPosRankSum=1.261;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:157,309:0.66:466
chr19	3733831	rs34564453	G	A	3048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-2.806;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:88,146:0.62:234
chr19	3733925	rs117778290	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr19	3734175	rs3746122	G	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:37,50:0.57:87
chr19	3735786	rs140254429	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,21:0.32:66
chr19	3738649	rs599587	A	C	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr19	3738971	rs600986	A	G	4646.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:118,224:0.65:342
chr19	3740658	rs10416362	T	G	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:56,139:0.71:195
chr19	3747896	rs145640324	G	A	2761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=0.248;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:89,132:0.60:221
chr19	3779934	rs12610723	A	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr19	3784757	rs2074976	T	G	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:137,196:0.59:333
chr19	3785223	rs4807509	T	G	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:21,59:0.74:80
chr19	3811457	rs10413220	G	C	1239.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=0.460;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:8,57:0.88:65
chr19	3811458	.	C	CT	100.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.129;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr19	3819275	rs2301840	A	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr19	3820293	rs2301844	A	G	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:56,80:0.59:136
chr19	3820305	rs2301845	T	G	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:63,76:0.55:139
chr19	3820441	rs2301847	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	3822008	rs28510805	C	G	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:33,58:0.64:91
chr19	3827734	rs62132979	G	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,71:0.63:113
chr19	3833572	rs56713158	TA	T	830.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.448;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.350;QD=7.04;ReadPosRankSum=0.197;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:48,70:0.59:118
chr19	3902722	rs2060247	C	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr19	3920616	rs8108660	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	3922125	rs56225015	A	T	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=3.314;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:61,85:0.58:146
chr19	3961533	rs76315900	G	A	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:44,107:0.71:151
chr19	3976863	rs62130414	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr19	3977486	rs36527	A	G	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:76,163:0.68:239
chr19	3979408	rs36526	A	G	7060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-0.837;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:192,344:0.64:536
chr19	3980824	rs36525	A	G	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:86,160:0.65:246
chr19	3981526	rs45443207	A	G	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:61,133:0.69:194
chr19	3982967	rs2230561	G	A	8468.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:200,400:0.67:600
chr19	3983184	rs2230560	A	G	11938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=1.307;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:313,575:0.65:888
chr19	3983302	rs2305107	G	A	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:53,123:0.70:176
chr19	3984453	rs8100131	G	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr19	3985250	rs62131469	C	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr19	4013322	rs2289865	T	C	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	4013389	rs7257356	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr19	4024020	rs2028827	G	A	4196.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:520,265:0.34:785
chr19	4028067	rs4520954	C	T	2057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-1.776;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:330,134:0.29:464
chr19	4028290	rs72976957	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:57,39:0.41:96
chr19	4032949	rs895333	A	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.259;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:99,33:0.25:132
chr19	4033462	rs7255988	T	C	4034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=706;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=1.772;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:449,240:0.35:689
chr19	4037322	rs75488612	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-1.096;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr19	4037966	rs72976977	T	C	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr19	4042077	rs4410205	C	A	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=3.405;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:67,51:0.43:118
chr19	4097203	rs10681431	T	TA	132	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-1.704;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr19	4101062	rs10250	G	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr19	4117705	rs350890	T	C	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	4153659	rs350879	G	A	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=4.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=1.373;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:18,44:0.71:62
chr19	4156841	rs350872	G	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	4156881	rs350871	G	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:44,70:0.61:114
chr19	4169998	rs350852	G	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	4170378	rs350851	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	4174950	rs350845	A	G	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:3,299:0.99:302
chr19	4177051	rs350844	A	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	4177331	rs350843	A	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	4180690	rs7260071	T	G	5859.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	4180836	rs352493	C	T	9988.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr19	4198154	rs1963331	C	T	1189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.814;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=0.279;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:31,54:0.64:85
chr19	4199809	rs112892199	C	CA	4786.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	4199839	rs6510793	A	C	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr19	4200156	rs2052191	G	A	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr19	4200206	rs2052192	A	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr19	4201805	rs11672646	G	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr19	4202683	rs352513	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.20;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	4202793	rs7260407	A	G	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	4208082	rs2240670	T	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	4210017	rs67953324	G	A	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	4210356	rs12978469	G	A	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	4210382	rs72980936	C	T	6795.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	4210401	rs60239405	C	CA	6589.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	4210465	rs12710072	A	G	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	4212808	rs58559746	C	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr19	4216910	rs10413818	G	A	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	4217207	rs353693	T	G	8766.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	4217587	rs58333777	G	A	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	4217956	rs6510794	A	G	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	4229635	rs400089	A	G	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:70,150:0.68:220
chr19	4233031	rs78467411	T	C	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	4233095	rs117467902	TG	CA	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;JOINED;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chr19	4233107	rs111301100	C	T	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr19	4234856	rs9807908	T	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:71,33:0.32:104
chr19	4236996	rs4740	G	A	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:181,88:0.33:269
chr19	4237067	rs4905	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:82,35:0.30:117
chr19	4247005	rs2302164	G	C	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:33,80:0.71:113
chr19	4250991	rs3803908	A	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,56:0.43:129
chr19	4251069	rs1045750	T	C	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-1.176;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:116,59:0.34:175
chr19	4254211	rs10853970	T	C	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr19	4254308	rs11085067	T	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.582;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr19	4254375	rs11085068	C	T	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=2.218;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:102,48:0.32:150
chr19	4268543	rs4807565	G	C	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:144,75:0.34:219
chr19	4280186	rs10419363	C	T	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:411,206:0.33:617
chr19	4288184	rs2380178	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	4288205	rs888928	T	C	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	4288220	rs888929	C	T	2244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-0.236;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:56,109:0.66:165
chr19	4288332	rs888930	A	G	11941.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:1,471:1.00:472
chr19	4292597	rs888932	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr19	4292961	.	C	CT	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.725;QD=1.13;ReadPosRankSum=0.338;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:176,45:0.20:221
chr19	4294542	rs12977100	C	T	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.197;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:58,68:0.54:126
chr19	4294551	rs62129297	T	C	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.147;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:79,67:0.46:146
chr19	4297855	rs112590213	TA	T	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.696;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-1.020;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:16,31:0.66:47
chr19	4297925	rs12459030	G	C	5441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-1.926;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:149,254:0.63:403
chr19	4302504	rs888933	C	G	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:105,184:0.64:289
chr19	4304774	rs17523436	G	A	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	4304855	rs62129299	A	G	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	4306311	rs4807578	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	4308098	rs11669091	T	C	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	4318365	rs3745990	G	A	3055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=1.916;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:269,176:0.40:445
chr19	4324564	rs57455784	C	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:71,25:0.26:96
chr19	4333711	rs7247504	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr19	4352763	rs11668153	C	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr19	4352838	rs11668187	C	G	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:54,98:0.64:152
chr19	4352959	rs11882587	A	G	3931.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:57,184:0.76:241
chr19	4353841	rs7246177	T	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr19	4355035	rs2041772	A	G	4696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=0.066;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:148,229:0.61:377
chr19	4355054	rs2041773	A	G	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:127,196:0.61:323
chr19	4355203	rs2041774	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=0.694;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	4357555	rs4807583	A	G	13612.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.12;ReadPosRankSum=0.559;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:2,540:1.00:542
chr19	4363289	rs62129346	C	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	4363477	rs111805435	G	A	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=1.898;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:233,82:0.26:315
chr19	4363960	rs112536459	C	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	4400314	rs62129356	C	T	4496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.002;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.091;QD=12.85;ReadPosRankSum=1.584;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:131,219:0.63:350
chr19	4402659	rs200677191	G	GGCGGCAGCA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	4408751	rs243347	A	G	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	4409756	rs2230636	A	G	5145.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:108,225:0.68:333
chr19	4417845	rs34080966	T	C	334.90	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr19	4423419	rs11668886	C	T	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:82,85:0.51:167
chr19	4429007	rs62130978	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr19	4442336	rs9352	C	T	5932.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	4442529	rs243382	T	C	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	4442999	rs243383	T	G	8344.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	4446995	rs243389	C	T	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	4453324	rs376965	TG	CC	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	4454083	rs1127888	C	T	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	4454104	rs117885408	G	T	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-0.656;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:114,52:0.31:166
chr19	4457496	rs10425328	CG	GC	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	4457518	rs56153949	C	G	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:48,126:0.72:174
chr19	4457791	.	TTAAA	T	1110.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.87;MQRankSum=1.654;QD=27.09;ReadPosRankSum=-2.281;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr19	4472447	rs57169858	TG	T	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.418;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr19	4472460	rs182316418	G	T	1162.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.60;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr19	4475606	rs3816048	T	C	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:49,126:0.72:175
chr19	4488926	rs10421685	G	A	3882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.093;QD=13.34;ReadPosRankSum=1.951;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:108,183:0.63:291
chr19	4488949	rs34663282	CT	C	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=8.191;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.741;QD=5.20;ReadPosRankSum=-0.301;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:34,61:0.64:95
chr19	4489013	.	T	C	136.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=5.713;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-3.526;QD=3.91;ReadPosRankSum=-0.377;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr19	4489014	.	G	A	136.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=5.713;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-3.526;QD=3.91;ReadPosRankSum=-0.178;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr19	4489021	.	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=6.652;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-3.417;QD=4.33;ReadPosRankSum=1.404;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr19	4491476	rs11878416	G	C	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr19	4493708	rs892161	A	G	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:76,150:0.66:226
chr19	4496198	rs2288930	A	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:42,63:0.60:105
chr19	4498154	rs919798	G	A	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.80;ReadPosRankSum=0.048;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:21,40:0.66:61
chr19	4498157	rs919797	G	A	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.23;ReadPosRankSum=0.147;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:21,39:0.65:60
chr19	4498245	rs2288926	A	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr19	4498440	rs2288924	T	C	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-0.581;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:113,45:0.28:158
chr19	4498700	rs10406139	A	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	4499023	rs67274054	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr19	4499632	rs72100503	AAGCTGGCCGGGGAGG	A	2139.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.709;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.490;QD=25.47;ReadPosRankSum=-0.602;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:2,82:0.98:84
chr19	4502201	rs8887	T	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chr19	4502249	rs373813598	G	C	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	4502282	rs13041	C	T	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.489;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.67;ReadPosRankSum=0.658;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	4502287	rs7254167	G	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	4508945	rs8105775	A	G	11781.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr19	4510389	rs8105610	C	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.23;ReadPosRankSum=0.423;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:50,41:0.45:91
chr19	4510560	rs7251858	C	T	4577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-0.011;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:458,258:0.36:716
chr19	4511140	rs7255715	C	G	5083.77	.	AC=1;AF=0.500;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	0/1:556,290:0.34:846
chr19	4511350	rs7259721	T	A	20827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.611;ClippingRankSum=0.000;DB;DP=1063;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-0.918;QD=19.95;ReadPosRankSum=7.846;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:163,881:0.84:1044
chr19	4511453	rs7255187	G	A	36263.77	.	AC=2;AF=1.00;AN=2;DB;DP=1075;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=34.31;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,1057:1.00:1057
chr19	4511525	rs7256712	A	G	35670.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.592;ClippingRankSum=0.000;DB;DP=1023;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;MQRankSum=-0.142;QD=35.01;ReadPosRankSum=-0.090;SOR=0.315;set=HC	GT:AD:AF:DP	1/1:1,1018:1.00:1019
chr19	4511647	rs7256387	C	G	14007.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.51;QD=26.63;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,526:1.00:526
chr19	4511725	rs73920825	T	C	20480.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.43;MQRankSum=1.901;QD=39.54;ReadPosRankSum=-1.264;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:2,516:1.00:518
chr19	4511730	rs62115190	T	C	30694.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.84;QD=49.35;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,622:1.00:622
chr19	4511737	rs57610751	T	C	7110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.933;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=7.000;QD=8.99;ReadPosRankSum=-4.354;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:425,366:0.46:791
chr19	4511746	rs62115192	A	T	8056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=8.177;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=1.023;QD=8.77;ReadPosRankSum=6.555;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:514,405:0.44:919
chr19	4511830	rs7257142	A	G	14833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.693;ClippingRankSum=0.000;DB;DP=1497;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=1.654;QD=10.09;ReadPosRankSum=4.933;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:774,696:0.47:1470
chr19	4511908	rs10423606	C	T	9648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=1127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.707;QD=8.64;ReadPosRankSum=0.907;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:811,306:0.27:1117
chr19	4511909	rs375758336	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.712;ClippingRankSum=0.000;DB;DP=1129;ExcessHet=3.0103;FS=3.341;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-7.097;QD=0.34;ReadPosRankSum=-1.276;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:987,100:0.09:1087
chr19	4511920	rs28460600	T	C	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.624;ClippingRankSum=0.000;DB;DP=1109;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-6.955;QD=0.43;ReadPosRankSum=-8.228;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:955,100:0.09:1055
chr19	4511927	rs10422025	G	A	15102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.044;ClippingRankSum=0.000;DB;DP=1064;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-5.961;QD=14.52;ReadPosRankSum=-5.168;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:639,401:0.39:1040
chr19	4511929	rs10424401	A	G	14910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.835;ClippingRankSum=0.000;DB;DP=1061;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-6.013;QD=14.38;ReadPosRankSum=-5.299;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:641,396:0.38:1037
chr19	4511955	rs7260518	T	C	30895.77	.	AC=2;AF=1.00;AN=2;DB;DP=1062;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=30.14;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,1025:1.00:1025
chr19	4512409	rs10410197	T	C	10642.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:218,482:0.69:700
chr19	4512514	rs7259625	G	C	12085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=829;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-3.642;QD=14.88;ReadPosRankSum=1.276;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:257,555:0.68:812
chr19	4512669	rs55901236	T	C	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	4513143	rs4807595	CA	TG	15155.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=58.58;QD=45.24;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr19	4513559	rs4807597	A	G	12807.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,476:1.00:476
chr19	4524016	rs1062223	G	A	1398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.586;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:216,95:0.31:311
chr19	4525046	rs1610090	A	G	10507.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.32;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,415:1.00:415
chr19	4525217	rs11670485	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr19	4529622	.	TACACACACACACACACAC	T,TACACACACACACACACACACACACAC	997.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.59;QD=38.37;SOR=1.445;set=HC	GT:AD:AF:DP	1/2:0,20,6:0.77,0.23:26
chr19	4531919	rs76461382	G	A	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-1.875;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr19	4550383	rs28667487	G	T	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.765;QD=7.14;ReadPosRankSum=0.212;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:56,37:0.40:93
chr19	4550386	rs138569803	T	TTTTG	900.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr19	4550698	rs2043328	C	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	4554583	rs1610094	A	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:88,48:0.35:136
chr19	4555310	rs10853973	T	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr19	4556816	rs62115778	C	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr19	4557056	rs10422881	A	C	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:173,112:0.39:285
chr19	4557299	rs17434453	C	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:278,106:0.28:384
chr19	4557437	rs11673058	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.973;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr19	4657957	rs11148	A	C	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=9.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=1.314;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:282,100:0.26:382
chr19	4659924	rs72620522	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:130,55:0.30:185
chr19	4660799	rs2286366	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:76,44:0.37:120
chr19	4665115	rs11880911	G	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr19	4670236	rs10401515	C	G	3712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-2.585;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:380,216:0.36:596
chr19	4670313	rs2270090	C	G	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:117,57:0.33:174
chr19	4682878	rs148398571	CAG	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=3.000;QD=0.39;ReadPosRankSum=-1.438;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:277,31:0.10:308
chr19	4684642	rs8105807	A	G	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:237,115:0.33:352
chr19	4685276	rs10421782	A	C	3137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=652;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.542;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:448,198:0.31:646
chr19	4690817	rs13346537	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr19	4697757	rs7254243	C	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:117,57:0.33:174
chr19	4700187	rs2277735	A	G	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-1.556;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:182,77:0.30:259
chr19	4714044	rs2277733	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	4714468	rs7251000	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr19	4720031	rs3833278	C	CCCT	1376.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	4720042	rs11672100	G	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	4720052	rs3833277	G	GC	1219.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	4723670	rs2277732	C	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr19	4723807	.	G	A	3937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-0.371;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:83,182:0.69:265
chr19	4769740	rs11878617	C	A	4670.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:101,214:0.68:315
chr19	4772202	rs3760955	A	C	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:291,142:0.33:433
chr19	4772343	rs3760954	T	C	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:251,149:0.37:400
chr19	4772449	rs2885717	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr19	4772463	rs3760951	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr19	4793430	rs142949631	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr19	4847713	rs9973235	A	G	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	4847874	rs9304915	A	G	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	4852106	rs2271058	A	G	38198.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=1480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.00;ReadPosRankSum=0.824;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:2,1467:1.00:1469
chr19	4852137	rs1055919	C	T	31289.77	.	AC=2;AF=1.00;AN=2;DB;DP=1206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,1193:1.00:1193
chr19	4852337	rs2271057	A	C	16988.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr19	4852438	rs142910022	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr19	4896948	rs35308440	C	CT	594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.243;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:18,40:0.69:58
chr19	4902754	rs2779168	G	A	5213.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:148,251:0.63:399
chr19	4909629	rs8103849	C	G	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:63,126:0.67:189
chr19	4910889	rs2261988	G	T	3487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-0.244;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:165,173:0.51:338
chr19	4910924	rs2261986	C	T	4031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-1.663;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:187,202:0.52:389
chr19	4929124	rs5826865	GC	G	862.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:70,45:0.39:115
chr19	4929413	rs2251520	T	C	2324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-2.500;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:281,149:0.35:430
chr19	4929473	rs2123731	A	G	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:154,81:0.34:235
chr19	4944555	rs2602730	G	A	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=2.003;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:237,114:0.32:351
chr19	4945914	rs2250982	A	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	4945974	rs2250978	T	C	1232.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.502;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.01;ReadPosRankSum=-0.899;SOR=0.636;set=HC	GT:AD:AF:DP	1/1:1,55:0.98:56
chr19	4954455	rs17883331	G	A	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.319;QD=5.52;ReadPosRankSum=0.616;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:98,50:0.34:148
chr19	4954644	rs2307207	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr19	4954679	rs55946225	G	GC	2243.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	4960583	rs66972926	CTG	C	7139.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:74,177:0.71:251
chr19	5041049	rs11878982	C	T	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr19	5041178	rs2240678	T	C	8606.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	5047442	rs141865002	T	TG	638.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:87,32:0.27:119
chr19	5047691	rs2620818	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:134,52:0.28:186
chr19	5070815	rs61279316	C	T	2550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=1.234;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:48,108:0.69:156
chr19	5111994	rs2613736	A	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	5132051	rs2620839	G	A	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	5135392	rs2620836	A	G	14871.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr19	5206775	rs1143700	A	G	7959.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr19	5207878	rs12979222	T	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:78,44:0.36:122
chr19	5210782	rs1143698	G	A	6995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=1233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-0.197;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:795,420:0.35:1215
chr19	5211568	rs55858361	G	A	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:28,56:0.67:84
chr19	5211967	rs35175880	C	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr19	5214533	rs9304921	A	G	12070.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:4,462:0.99:466
chr19	5214697	rs4807697	A	G	14871.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:1,578:1.00:579
chr19	5216896	rs5826875	C	CG	301.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	5219899	rs12981952	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr19	5220900	rs10412973	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	5222071	rs3746132	G	C	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	5222831	rs2230610	G	A	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-0.916;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:112,57:0.34:169
chr19	5225555	rs35664173	C	CG	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.515;QD=4.84;ReadPosRankSum=0.192;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	5225802	rs10415592	G	A	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:254,140:0.36:394
chr19	5239113	rs36155090	A	G	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=3.118;QD=6.89;ReadPosRankSum=2.438;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,38:0.40:96
chr19	5239173	rs372687515	GGGGAGA	G	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.00;MQRankSum=1.457;QD=18.99;ReadPosRankSum=0.685;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr19	5240193	rs35072097	TC	T	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.540;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr19	5240392	rs3746130	C	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr19	5250958	rs10598598	CGGGGGGGGGG	C	1043.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.548;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.14;ReadPosRankSum=1.739;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr19	5255992	rs34548642	A	AT	826.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	5260878	rs36016542	T	C	6735.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;QD=43.46;SOR=1.246;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	5260879	rs10708972	GT	G	6726.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=44.55;SOR=1.304;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	5260933	rs7246162	A	T	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	5263061	rs55840918	G	T	1876.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.202;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.06;ReadPosRankSum=-0.847;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:1,77:0.99:78
chr19	5264967	rs4807017	A	G	9934.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	5265222	rs4807703	G	A	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	5455422	rs4375786	T	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	5455611	rs2240743	C	T	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:260,136:0.34:396
chr19	5455735	rs2240744	G	A	2489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=0.323;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:281,144:0.34:425
chr19	5455796	rs420325	A	G	12725.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.97;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr19	5455796	.	AGTGG	GGTGA,GGTGG	1858	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=8;MMLQ=23;MQ=59.98;NF=37,107;NR=35,89;PP=995,1858;QD=14.5620538175;SC=CCGCGCAGGCAGTGGTACGGG;SbPval=0.4;Source=Platypus;TC=196;TCF=107;TCR=89;TR=72,196;WE=5455808;WS=5455786;set=Platypus	GT:AF:DP	0/1:0.37:196
chr19	5455800	rs2240745	G	A	2121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.832;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:282,125:0.31:407
chr19	5455971	rs8103406	G	T	6839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-0.229;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:310,185:0.37:495
chr19	5455978	rs8107825	T	C	6973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.220;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:331,199:0.38:530
chr19	5456450	rs8111108	T	C	20524.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,780:1.00:780
chr19	5613396	rs145997637	CAT	C	5726.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.814;QD=10.91;ReadPosRankSum=0.996;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:353,172:0.33:525
chr19	5645444	rs2436502	G	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:220,99:0.31:319
chr19	5661896	rs35301279	A	AT	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=1.365;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:95,47:0.33:142
chr19	5667204	rs148831822	AC	A	450.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.047;QD=1.68;ReadPosRankSum=-0.553;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:220,49:0.18:269
chr19	5684775	rs35832694	G	A	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr19	5691987	rs3835296	T	TCAGTTCTGGCCCAGACAGGGCCTGACATC	1504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=7.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=0.109;SOR=2.722;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr19	5694349	rs2485256	G	A	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:275,120:0.30:395
chr19	5694630	rs2436514	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr19	5694649	.	C	CGGGCGCGGGGTGGTGGGGTGAT	552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=1.135;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr19	5696245	rs4073993	A	G	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr19	5707204	rs945828	T	C	8296.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr19	5708484	.	T	TGGCCCTGGGAGCCCCACCCACCAGCTCCATCAAGTATGGGGCAGGGTCGCTGGGGCCCAGCAGTGCTCCAGCAGGGGGTGGGCTAGGTGGGAGGCAC	1600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.329;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=57.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=5.636;SOR=4.803;set=HC	GT:AD:AF:DP	0/1:80,34:0.30:114
chr19	5712108	rs2261565	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:56,32:0.36:88
chr19	5727414	rs5826899	C	CT	812.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:77,29:0.27:106
chr19	5758934	.	CAA	C	104.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.01;ReadPosRankSum=2.301;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	5759231	rs11879365	T	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr19	5766090	rs2446200	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:85,46:0.35:131
chr19	5768331	rs10680062	T	TTTTA	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr19	5787215	.	G	GGTGGGAGGTCGTGGGAGATGGTGGGAGGTCGTGGGAGATGGTGGGAGGTAGTGGGAGACAGTGGCAGACAGTGGGAGGTGGTGGGAGATGGTGGCAGACGGTGGGAGGTGGTGGGAGACAGTGGGAAGTGGTGGGAGGTGGTGGGAGACGGTGGGAGGTGGTAGGAGACGGTGGGAGGTGGTGGGAGACACTCGGAGACGGTGGGATGTGGTGGGAGGTAGTGGGAGACATTGGCAGACGGTGGGAGGTGGTGGGAGATGGTGAGAGGTGGTGGGAGACGGCGGGAGGTGGTGGGAGATGGCGGGAGGTGGTGGGAAGTGGTGGGAGACGGAGATGGTGGGAGACGGTGGGAGACGGCGGGAGGTGGAGGGAGGCGGCGGGAGATGGCGGGAGGTGGCAGGAGACGTGGGAGGTGGCAGGAGACGGTGGGAGGTGGTGGGAGACA	10874.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.686;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;MQRankSum=0.585;QD=87.70;ReadPosRankSum=0.918;SOR=0.640;set=HC	GT:AD:AF:DP	1/1:25,99:0.80:124
chr19	5788228	rs113274115	GCA	G	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=1054;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=3.731;QD=0.13;ReadPosRankSum=-0.216;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:797,126:0.14:923
chr19	5827620	rs8106995	C	T	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:17,56:0.77:73
chr19	5831724	rs112313064	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.64;QD=27.72;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	5832209	rs778805	G	A	15006.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=26.47;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,567:1.00:567
chr19	5866585	rs778982	C	T	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	5866654	rs778983	A	G	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.02;QD=26.43;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	5866724	rs4807054	G	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.50;MQRankSum=-0.235;QD=6.13;ReadPosRankSum=-0.109;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr19	5866736	rs57100281	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.16;QD=32.90;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	5866816	rs28541500	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	5866840	rs702065	T	C	141.81	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	5866979	rs149142282	C	T	3907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.965;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=49.19;MQRankSum=-5.663;QD=13.76;ReadPosRankSum=-1.789;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:95,189:0.67:284
chr19	5867177	rs778970	G	A	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	5867748	rs778971	G	T	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:267,109:0.29:376
chr19	5892317	rs1626918	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	5892382	rs1678867	C	T	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	5892433	rs1627779	C	T	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.598;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:111,49:0.31:160
chr19	5892486	rs1628564	C	T	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	5892568	rs1629368	G	T	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	5892585	rs60236148	G	A	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:50,118:0.70:168
chr19	5892743	rs10432306	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:84,36:0.30:120
chr19	5892770	rs1631032	C	T	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	5892954	rs1678868	T	C	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=2.045;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:149,63:0.30:212
chr19	5903807	rs8108064	G	T	8738.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	5905141	rs10406399	G	A	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	5908969	rs10404195	G	A	6010.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:140,280:0.67:420
chr19	5928185	rs274793	T	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	5994823	rs71942694	CGAG	C	4718.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:56,119:0.68:175
chr19	5995450	rs452767	T	C	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:18,77:0.81:95
chr19	5995582	rs2302222	T	C	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:89,136:0.60:225
chr19	6002917	rs28421560	A	G	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:30,92:0.75:122
chr19	6141471	rs10853992	C	A	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	6141758	rs9304926	G	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	6141809	rs9304927	G	A	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	6147743	rs9304929	G	C	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	6151549	rs10422296	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	6151703	rs7252466	C	T	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	6156483	rs4807840	T	C	11938.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.037;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=0.541;SOR=0.230;set=HC	GT:AD:AF:DP	1/1:1,467:1.00:468
chr19	6161110	rs372263768	C	CAAA,CAAAA	1342.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.258;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;MQRankSum=0.390;QD=31.23;ReadPosRankSum=-2.113;SOR=0.604;set=HC	GT:AD:AF:DP	1/2:3,26,14:0.60,0.33:43
chr19	6214085	.	C	T	347.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr19	6279710	.	G	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.83;ReadPosRankSum=-0.869;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	6279833	.	TCGCCGCCGC	T	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.453;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr19	6279895	.	G	GCGC	585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.270;QD=11.95;ReadPosRankSum=0.114;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr19	6306971	rs4807863	G	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr19	6333290	rs2335192	T	C	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	6333658	rs182737411	G	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	6361845	rs57445020	G	GC	10631.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:4,331:0.99:335
chr19	6364742	.	G	GT	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.446;QD=1.77;ReadPosRankSum=-1.715;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:110,40:0.27:150
chr19	6396503	rs143089183	C	T	3419.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:72,162:0.69:234
chr19	6415443	rs1616305	T	C	19157.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=824;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=2.608;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:4,751:0.99:755
chr19	6415795	rs8103311	T	C	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	6417855	rs2258496	G	A	13720.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr19	6419275	rs2305059	A	G	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	6426271	rs66673060	CCAGCCT	C	1853.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	6436304	rs2860182	TC	CT	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	6456339	rs10425567	T	C	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:130,80:0.38:210
chr19	6457367	rs348370	T	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:49,23:0.32:72
chr19	6459720	.	C	T	401.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr19	6464936	rs348359	G	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.589;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=6.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.224;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr19	6466341	rs117422046	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr19	6466368	.	ATG	A	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.038;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:68,10:0.13:78
chr19	6466482	rs348362	A	G	1907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.198;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:315,125:0.28:440
chr19	6469042	rs150679157	CT	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-1.106;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:157,46:0.23:203
chr19	6475163	rs12976944	A	C	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=26.76;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	6475613	rs3745571	T	C	15794.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr19	6477256	rs348398	G	T	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:3,247:0.99:250
chr19	6477324	rs348399	G	C	7850.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr19	6477364	.	C	T	4743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.721;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=0.790;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:137,222:0.62:359
chr19	6477617	.	T	TTAATAATAATAA	366.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	6532953	rs76771492	T	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr19	6535080	rs2234182	T	C	7425.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	6583564	rs72193958	CTTTTTTTTTTTT	C	764.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=40.25;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	6585921	rs453462	G	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	6586268	rs1862511	G	A	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	6665020	rs344560	T	C	31124.77	.	AC=2;AF=1.00;AN=2;DB;DP=1211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,1190:1.00:1190
chr19	6666908	rs147441311	AAAATAAAT	A	323.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	6677989	rs17030	G	A	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-0.699;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:241,115:0.32:356
chr19	6679360	rs344555	T	C	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:92,72:0.44:164
chr19	6679511	rs2277984	C	T	3500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=2.324;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:384,210:0.35:594
chr19	6679563	rs2277983	T	C	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:249,159:0.39:408
chr19	6689331	.	T	TCTACCTACCTAC	672	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=1;MGOF=30;MMLQ=24;MQ=58.81;NF=0;NR=47;PP=672;QD=14.3829787234;SC=TCTCTCTCTCTCTACCTACCT;SbPval=1.0;Source=Platypus;TC=89;TCF=0;TCR=89;TR=47;WE=6689358;WS=6689321;set=Platypus	GT:AD:AF:DP	1/0:42,47:0.53:89
chr19	6689333	.	TAC	T	539	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=30;MMLQ=26;MQ=58.73;NF=0;NR=47;PP=539;QD=11.5531914894;SC=TCTCTCTCTCTACCTACCTCC;SbPval=1.0;Source=Platypus;TC=87;TCF=0;TCR=87;TR=47;WE=6689358;WS=6689321;set=Platypus	GT:AD:AF:DP	0/1:40,47:0.54:87
chr19	6689342	rs73498313	C	A	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=-0.055;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr19	6689346	rs141412883	C	A	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=-0.544;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr19	6689367	.	C	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=-0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-1.225;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	6689371	rs13345176	C	T	400.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.55;ReadPosRankSum=-0.366;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr19	6690461	rs6417195	G	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	6693571	rs11085194	C	T	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	6696342	rs2287848	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	6696496	rs2287847	T	C	19971.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,765:1.00:765
chr19	6696557	rs2287846	C	G	23797.77	.	AC=2;AF=1.00;AN=2;DB;DP=918;set=Intersection	GT:AD:AF:DP	1/1:0,908:1.00:908
chr19	6696597	rs2287845	G	A	17407.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr19	6696691	rs2355315	G	T	8325.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.70;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	6696699	rs2253756	G	A	7849.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	6696789	rs2355316	G	A	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	6697214	rs5826946	AT	A	264.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	6697406	rs423490	A	G	15231.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.152;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.30;ReadPosRankSum=-0.646;SOR=0.259;set=HC	GT:AD:AF:DP	1/1:1,601:1.00:602
chr19	6697829	rs366510	G	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	6702042	rs433594	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	6702157	rs428453	C	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	6702246	rs432823	T	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	6702598	rs406514	G	A	7344.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	6708107	rs10659507	T	TTCTC	3523.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.45;SOR=1.638;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	6710572	rs189367	G	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	6710782	rs2230203	G	T	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:74,123:0.62:197
chr19	6713175	rs11085197	G	C	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:40,83:0.67:123
chr19	6713262	rs1047286	G	A	4087.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:102,191:0.65:293
chr19	6718387	rs2230199	G	C	5743.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:160,275:0.63:435
chr19	6718534	rs2250656	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr19	6731057	rs2279624	T	C	7845.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr19	6731304	rs2279626	G	A	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	6731766	rs1702375	C	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	6732018	rs2291666	C	T	15997.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,614:1.00:614
chr19	6732476	rs117899024	G	T	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:196,115:0.37:311
chr19	6732615	rs2047139	T	C	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	6732982	rs2012357	G	A	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.29;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	6733517	rs339395	A	G	4960.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	6734131	rs339397	C	G	14008.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,536:1.00:536
chr19	6737481	rs340138	T	C	17674.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr19	6737509	rs339401	G	A	23138.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.98;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,747:1.00:747
chr19	6737509	.	GCAGCAGC	ACAGCAGC,ACAGCAGT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.68;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=17;MMLQ=24;MQ=59.98;NF=189,56;NR=185,59;PP=2962,1337;QD=20;SC=CAGCCACCCAGCAGCAGCACC;SbPval=0.53;Source=Platypus;TC=375;TCF=190;TCR=185;TR=374,115;WE=6737524;WS=6737499;set=Platypus	GT:AF:DP	0/1:1.00:375
chr19	6737516	rs11539591	C	T	3664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.951;ClippingRankSum=0.000;DB;DP=803;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.849;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:550,230:0.29:780
chr19	6739710	rs2303109	G	T	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	6743399	rs381897	A	T	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	6743634	rs339407	G	C	6722.73	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:57,304:0.84:361
chr19	6744762	rs339405	A	C	16348.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,617:1.00:617
chr19	6754774	rs168129	C	A	11643.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr19	6760974	rs7258236	T	C	3783.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:94,176:0.65:270
chr19	6761008	rs7258083	A	G	4490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.22;ReadPosRankSum=0.411;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:51,114:0.69:165
chr19	6761011	rs7246122	T	G	4456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.75;ReadPosRankSum=0.008;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:46,109:0.70:155
chr19	6763718	rs2305805	A	G	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:70,93:0.57:163
chr19	6772872	rs45448796	G	C	3325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-0.206;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:98,151:0.61:249
chr19	6820951	rs164016	C	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	6821545	rs7258040	C	T	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	6821625	rs28617395	C	T	9699.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:2,379:0.99:381
chr19	6821931	rs906331	G	C	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	6822219	rs347033	T	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	6828040	rs164022	G	C	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:197,99:0.33:296
chr19	6833072	rs308200	C	T	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	6833162	rs78698684	CT	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.132;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr19	6833777	rs186295	A	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	6833989	rs308199	G	T	1580.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.507;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.148;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.70;ReadPosRankSum=0.114;SOR=0.374;set=HC	GT:AD:AF:DP	1/1:1,63:0.98:64
chr19	6836271	rs308196	A	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	6836836	rs308194	G	A	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	6836844	rs6146454	GACACACACACACACACACACAC	G	792.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	6890432	rs57355800	GT	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.951;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=9.717;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.545;QD=0.73;ReadPosRankSum=2.006;SOR=0.080;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr19	6908675	rs34044572	C	CT,CTT	3127.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=-0.359;SOR=0.677;set=HC	GT:AD:AF:DP	1/2:33,131,48:0.62,0.23:212
chr19	6913811	rs457857	A	G	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=0.555;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:106,51:0.32:157
chr19	6913878	rs462913	G	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr19	6919624	rs373533	A	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr19	6919753	rs461645	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:96,33:0.26:129
chr19	6919879	rs252566	C	T	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	6921713	rs34941944	G	GT	1819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-0.073;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:67,98:0.59:165
chr19	6924672	rs2290634	A	G	3284.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:111,155:0.58:266
chr19	6926355	rs4807915	T	C	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.607;QD=27.06;ReadPosRankSum=1.163;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr19	6926378	rs2228539	T	C	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-0.657;QD=23.42;ReadPosRankSum=0.250;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr19	6935113	rs252551	C	T	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr19	6935121	rs1160969	T	TAA	11337.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	6937172	rs12981770	C	A	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-0.205;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:35,54:0.61:89
chr19	6937683	rs388711	A	G	8650.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr19	6939910	rs463891	G	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	6940189	rs464849	G	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	6953167	rs11085208	C	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	6954725	rs11085209	G	A	7595.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr19	6960333	rs192913277	C	T	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:105,175:0.62:280
chr19	6960834	rs459883	A	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr19	6961182	rs460698	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	6974564	rs466123	C	T	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	6977211	rs4807919	A	G	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	6977409	rs7255801	C	T	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	6980939	rs2035972	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	6981582	rs2035971	A	T	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	6981763	rs2035970	G	A	7606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-0.705;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:179,372:0.68:551
chr19	6981849	rs1874003	T	C	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.61;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	6981885	rs1874002	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	6984708	rs7247453	G	A	5757.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	6984927	rs34752448	T	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	6988662	rs8107779	T	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	6988791	rs8103492	G	C	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	6988914	rs1466715	A	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	6990702	rs12972391	A	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:54,20:0.27:74
chr19	6991010	rs8108538	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	6994972	rs10416745	G	A	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:302,117:0.28:419
chr19	7005905	rs62126094	T	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.60;QD=28.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	7011766	rs6510942	T	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	7012162	rs66626943	C	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=54.51;MQRankSum=-1.732;QD=12.38;ReadPosRankSum=-1.001;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr19	7012180	rs59667403	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=-1.282;QD=11.63;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	7074872	rs2967648	G	A	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr19	7083629	rs966591	A	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	7083761	rs8110740	A	G	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	7116963	rs1051690	T	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	7117487	rs11883325	C	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr19	7117506	rs11883202	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr19	7119658	rs13306448	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	7122511	rs34073323	AT	A	887.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr19	7125297	rs1799817	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:90,53:0.37:143
chr19	7131996	rs148055651	CAA	C	196.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.28;ReadPosRankSum=2.458;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	7150418	rs2252673	C	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	7163065	rs2962	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr19	7163230	rs2245648	T	C	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:61,74:0.55:135
chr19	7166006	rs78301545	T	C	259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.722;QD=15.28;ReadPosRankSum=-0.149;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	7166014	rs78248456	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.368;QD=12.93;ReadPosRankSum=1.092;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	7166036	rs62124510	C	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.605;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=11.475;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-1.059;QD=13.78;ReadPosRankSum=-0.250;SOR=3.198;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	7166043	rs57156578	T	TA	723.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=22.165;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.810;QD=14.47;ReadPosRankSum=0.664;SOR=4.429;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr19	7166109	rs2059807	A	G	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	7166388	rs2229429	G	A	3109.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:102,152:0.60:254
chr19	7170517	rs2860178	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-0.623;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr19	7172209	rs8113777	C	T	1721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-1.541;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:50,77:0.61:127
chr19	7293898	rs7508518	G	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	7427607	rs11260007	T	C	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	7440870	rs1015956	A	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.424;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:40,23:0.37:63
chr19	7441649	rs72992618	C	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr19	7443253	rs8113073	C	T	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-1.121;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:223,89:0.29:312
chr19	7504767	rs10401415	G	T	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr19	7504982	rs10422503	C	T	3756.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:106,179:0.63:285
chr19	7506668	rs2287909	T	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:24,59:0.71:83
chr19	7506755	rs2287910	A	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr19	7506982	rs10424311	C	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr19	7507010	rs200202576	CCCTTCCTTCCTTCCTTCCTTCCTTCCTT	C,CCCTTCCTTCCTT	474.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.56;SOR=5.136;set=HC	GT:AD:AF:DP	1/2:0,5,7:0.42,0.58:12
chr19	7509436	rs12983399	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr19	7509492	rs12983450	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:44,14:0.24:58
chr19	7512065	rs59050162	T	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=1.416;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr19	7518268	rs11463454	T	TC	1137.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	7524727	rs34322626	G	A	1975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=2.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=0.921;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:252,128:0.34:380
chr19	7524743	rs11259996	G	C	5360.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:144,265:0.65:409
chr19	7524846	rs2287914	C	T	3068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=0.940;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:166,89:0.35:255
chr19	7524855	rs2287915	C	T	3011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-0.419;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:148,85:0.36:233
chr19	7528734	rs2287918	A	G	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	7529415	rs2287919	C	T	1334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=0.108;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:140,77:0.35:217
chr19	7531722	rs112677825	A	AAAGGAAGAAG	2108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.116;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=18.735;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.378;QD=14.35;ReadPosRankSum=-3.654;SOR=1.952;set=HC	GT:AD:AF:DP	0/1:97,50:0.34:147
chr19	7532252	rs2303142	G	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.599;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:120,39:0.25:159
chr19	7533767	rs10405143	T	G	7783.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	7533850	rs9329368	A	G	8619.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=-0.644;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,334:0.99:336
chr19	7534075	rs2241396	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr19	7535249	rs12972299	C	A	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.729;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr19	7538039	rs11880122	A	G	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	7538117	rs11880140	A	G	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:70,155:0.69:225
chr19	7543080	rs7251754	T	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	7543297	rs2303145	C	T	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	7547074	rs2303146	A	C	10096.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr19	7550844	rs34970001	G	A	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	7568966	rs113706007	A	ATCTCTCTC,ATCTCTCTCTCTC,ATCTCTC	1971.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DB;DP=51;set=Intersection	GT:AF:DP	1/2:0.77,0.23:47
chr19	7569282	rs484870	A	G	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=0.852;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:84,37:0.31:121
chr19	7570729	rs683729	G	A	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	7570978	rs685034	T	C	17855.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr19	7570990	rs685048	A	G	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:360,159:0.31:519
chr19	7571030	rs3826736	T	A	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:230,103:0.31:333
chr19	7571067	rs200631755	A	AAGCCCCGCCCCATGG	1113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=4.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.348;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:73,32:0.30:105
chr19	7571094	rs3826735	G	T	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:46,101:0.69:147
chr19	7571120	.	CCCCCATGGAGCCCCT	C	1434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=4.312;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.545;QD=8.34;ReadPosRankSum=1.001;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:131,41:0.24:172
chr19	7571157	rs812664	C	T	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=5.882;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.732;QD=7.55;ReadPosRankSum=-1.164;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:172,70:0.29:242
chr19	7572169	rs505570	G	C	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:123,90:0.42:213
chr19	7573098	rs475923	T	A	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:91,64:0.41:155
chr19	7573287	rs1133378	C	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-0.176;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr19	7573297	rs608144	T	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=1.915;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr19	7573301	rs1133380	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=1.875;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr19	7584223	rs11555037	A	G	20109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=1408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=1.233;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:458,938:0.67:1396
chr19	7593571	rs61736600	A	C	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-1.318;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:208,98:0.32:306
chr19	7593589	rs612862	C	T	4397.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:105,210:0.67:315
chr19	7594159	rs625910	G	A	3712.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:66,172:0.72:238
chr19	7595121	rs11880842	C	T	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:22,59:0.73:81
chr19	7606737	rs492092	G	C	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:35,70:0.67:105
chr19	7607441	rs574930	C	T	3442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=0.939;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:110,171:0.61:281
chr19	7607564	rs620744	T	C	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:63,135:0.68:198
chr19	7615585	rs577219	T	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr19	7615682	rs66529260	GA	G	447.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr19	7615903	rs8107538	G	A	4677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.495;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-1.002;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:400,259:0.39:659
chr19	7616347	rs473899	G	A	4272.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:141,209:0.60:350
chr19	7616474	rs661825	C	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	7618660	rs508740	A	G	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:63,98:0.61:161
chr19	7619199	rs534464	C	G	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,294:1.00:295
chr19	7619229	rs563266	T	C	3005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.297;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:72,137:0.66:209
chr19	7619239	rs597582	T	C	7331.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.39;SOR=1.126;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	7619329	rs598023	G	A	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	7619338	rs598028	G	C	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.78;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	7619647	rs599328	GT	CC	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	7619700	rs524530	G	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	7619760	rs539887	A	C	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.311;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:108,33:0.23:141
chr19	7620116	rs563826	A	G	2730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-0.072;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:494,185:0.27:679
chr19	7621648	rs489056	C	T	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr19	7621981	rs2446176	A	G	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	7622226	rs1645800	G	A	14200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=1117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=1.412;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:406,667:0.62:1073
chr19	7623700	rs535208	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr19	7624078	rs538850	C	T	5410.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:118,251:0.68:369
chr19	7624079	rs538852	G	A	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:246,116:0.32:362
chr19	7626013	rs11307097	AC	A	3877.73	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:306,172:0.36:478
chr19	7661092	.	T	TG	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.079;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	7670033	rs56244737	G	GGT	1836.73	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:234,97:0.29:331
chr19	7671308	rs72992533	C	T	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:148,96:0.39:244
chr19	7675369	rs62113420	C	T	2118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.844;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:254,130:0.34:384
chr19	7680003	rs62113426	G	C	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:51,14:0.22:65
chr19	7685981	rs4134863	G	A	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:101,61:0.38:162
chr19	7686282	rs4134861	A	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr19	7687626	rs4134851	C	G	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:519,229:0.31:748
chr19	7687908	rs4134849	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,31:0.45:69
chr19	7688039	rs4134846	C	T	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:278,128:0.32:406
chr19	7688614	rs2335521	T	C	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-0.472;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:94,56:0.37:150
chr19	7691001	rs4134838	G	C	1950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.719;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:274,123:0.31:397
chr19	7691179	rs138662514	G	C	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:63,140:0.69:203
chr19	7692058	rs794084	G	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:80,39:0.33:119
chr19	7692076	rs4134826	T	C	1531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-0.279;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:96,44:0.31:140
chr19	7692083	rs4134825	G	A	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-0.869;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:103,49:0.32:152
chr19	7694393	rs4134809	G	A	5065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=902;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=0.127;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:598,298:0.33:896
chr19	7695620	rs11260004	T	C	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:152,84:0.36:236
chr19	7697168	rs2279042	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-1.070;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:48,24:0.33:72
chr19	7697779	rs56272042	T	C	3178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.490;QD=10.35;ReadPosRankSum=-0.015;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:211,96:0.31:307
chr19	7697787	rs56262542	T	C	3055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.502;QD=10.99;ReadPosRankSum=0.775;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:192,86:0.31:278
chr19	7697885	rs78473084	TGA	T	575.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr19	7698226	rs151032321	C	CTAAT	2431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=1.770;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:161,67:0.29:228
chr19	7698320	rs1862514	C	T	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.978;QD=5.67;ReadPosRankSum=-0.805;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:147,76:0.34:223
chr19	7703490	rs144737616	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=1.123;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr19	7703605	rs8104339	C	T	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.716;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:146,90:0.38:236
chr19	7704815	rs138165596	TATGTGTGTGC	T	652.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr19	7708214	rs2303115	G	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr19	7710040	rs929807	T	C	2993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-2.569;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:263,168:0.39:431
chr19	7710210	rs889187	A	G	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:97,53:0.35:150
chr19	7710269	rs710951	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr19	7711221	rs10001	T	C	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=0.904;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:103,71:0.41:174
chr19	7712161	rs55954306	C	T	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=4.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.494;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:126,52:0.29:178
chr19	7712277	rs6791	A	G	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:183,112:0.38:295
chr19	7712425	rs34976997	G	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,25:0.27:91
chr19	7712474	rs794074	G	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr19	7712585	rs794073	T	G	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.238;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:305,112:0.27:417
chr19	7734369	rs3219177	C	T	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:74,129:0.64:203
chr19	7734511	rs3745367	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr19	7734814	rs34788323	C	T	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:39,102:0.72:141
chr19	7735089	rs10402265	G	C	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	7735318	rs112669651	AGATGATGAT	A	870.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=41.46;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	7742139	.	T	C	313.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr19	7742345	rs8107661	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr19	7743879	rs4804766	C	T	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:63,55:0.47:118
chr19	7744075	rs112807024	ACC	A,AC	1246.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.312;QD=28.33;ReadPosRankSum=-0.619;SOR=0.846;set=HC	GT:AD:AF:DP	1/2:1,25,18:0.57,0.41:44
chr19	7747293	rs6952	T	G	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:86,137:0.61:223
chr19	7747445	rs1053363	G	A	8132.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:195,378:0.66:573
chr19	7754912	rs4996980	G	A	2808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.57;ReadPosRankSum=0.477;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:26,69:0.73:95
chr19	7754917	rs4996979	T	C	2836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.65;ReadPosRankSum=0.614;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:28,71:0.72:99
chr19	7754942	rs4996978	A	C	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:60,112:0.65:172
chr19	7754964	rs4996977	T	C	7108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.21;ReadPosRankSum=-0.410;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:83,169:0.67:252
chr19	7754968	rs4996976	A	G	7376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.32;ReadPosRankSum=-0.029;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:91,179:0.66:270
chr19	7754971	rs4996975	C	T	7395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=1.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.70;ReadPosRankSum=-0.646;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:91,186:0.67:277
chr19	7755056	rs2228138	G	A	8537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=-1.350;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:214,406:0.65:620
chr19	7755159	rs4996973	A	G	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:86,114:0.57:200
chr19	7755213	rs4996972	C	T	3877.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:122,178:0.59:300
chr19	7755241	rs148383467	T	TC	5438.73	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:185,264:0.59:449
chr19	7755285	rs28364072	A	G	8912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.138;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.347;QD=11.67;ReadPosRankSum=1.252;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:287,477:0.62:764
chr19	7755469	rs2277995	T	C	3102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=2.277;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:86,81:0.49:167
chr19	7755472	rs74927160	G	T	3108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=1.671;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:82,81:0.50:163
chr19	7755478	rs75584211	TG	CA	3023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.749;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.107;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.85;ReadPosRankSum=1.210;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:71,74:0.51:145
chr19	7755482	rs77121754	A	G	2751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.54;ReadPosRankSum=1.210;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:65,69:0.51:134
chr19	7755485	rs76013233	G	A	2673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.95;ReadPosRankSum=1.039;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:65,69:0.51:134
chr19	7755518	rs2277994	A	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr19	7761472	rs35446135	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr19	7761494	rs35085623	CTT	C	1560.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr19	7761667	rs66479741	A	G	5550.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:148,272:0.65:420
chr19	7761812	rs2277989	A	G	7213.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:176,341:0.66:517
chr19	7762380	rs113716290	TCCCCTGCAA	T	3796.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:52,95:0.65:147
chr19	7762653	rs35652200	CTA	C	2214.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,56:0.69:81
chr19	7763045	rs7249320	C	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr19	7763248	rs2228137	G	A	6437.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:140,303:0.68:443
chr19	7763878	rs12981234	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr19	7764157	rs12984870	A	G	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:29,67:0.70:96
chr19	7764363	rs61499635	GTTTTT	G,GT	3357.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=103;set=Intersection	GT:AF:DP	1/2:0.27,0.73:89
chr19	7764436	rs12980031	G	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	7764545	rs3214456	G	GC	2307.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.05;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	7764741	rs2287867	G	A	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	7764772	rs2287868	T	C	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	7794605	rs2277997	T	C	7179.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr19	7795360	rs143587575	G	A	3334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=0.993;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:59,153:0.72:212
chr19	7795809	rs8112262	C	T	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=1.445;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:49,84:0.63:133
chr19	7795813	rs6603117	G	A,C	4933.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=155;set=Intersection	GT:AF:DP	1/2:0.34,0.66:146
chr19	7795955	rs8112382	C	A	7028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-0.829;QD=13.60;ReadPosRankSum=-0.141;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:182,335:0.65:517
chr19	7796304	.	G	A	683.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr19	7796497	rs11260026	C	G	7934.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	7796709	rs73921546	C	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr19	7831007	.	A	G	869	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=2;MGOF=7;MMLQ=23;MQ=58.55;NF=28;NR=33;PP=869;QD=14.8159215172;SC=GAGCTGACCCAGCTGAAGGCT;SbPval=0.64;Source=Platypus;TC=111;TCF=54;TCR=57;TR=61;WE=7831015;WS=7830997;set=Platypus	GT:AD:AF:DP	0/1:50,61:0.55:111
chr19	7831166	rs868875	A	G	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:17,55:0.76:72
chr19	7831226	rs868876	A	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr19	7831429	rs475896	C	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr19	7831628	rs2277998	G	A	9250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.295;QD=13.14;ReadPosRankSum=2.102;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:264,440:0.62:704
chr19	7831700	rs562607	G	C	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:89,144:0.62:233
chr19	7913974	rs555609	T	C	16572.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,636:1.00:636
chr19	7916475	rs2452012	T	C	16290.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,626:1.00:626
chr19	7916620	rs580790	A	G	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	7918103	rs526464	A	G	14833.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr19	7925383	rs118176823	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	7927801	.	C	T	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=1.063;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:38,59:0.61:97
chr19	7928462	rs10410459	T	C	9345.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	7935055	rs56831289	C	G	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	7935177	rs73500088	C	G	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=24.82;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	7935634	rs73500091	A	G	2447.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.76;ReadPosRankSum=0.036;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:2,101:0.98:103
chr19	7938306	rs58971992	A	AG	4107.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	7944348	rs56796931	TC	T	8269.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	7963914	rs524029	A	C	18889.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.63;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,737:1.00:737
chr19	7963949	rs2042919	A	G	14254.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr19	7963976	rs2115108	T	C	11199.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr19	7964727	rs3745382	G	A	13282.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr19	7969185	rs116836415	A	C	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	7969486	rs3810211	C	T	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	7970635	rs4804833	A	G	7636.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	7975464	rs11879199	A	C	20462.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,783:1.00:783
chr19	7976112	rs7260355	G	A	2503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.781;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.275;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:347,151:0.30:498
chr19	7976529	rs2303700	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	7986638	rs475002	C	G	9108.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.73;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr19	7995987	rs58157552	T	TA	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.815;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:139,49:0.26:188
chr19	7997441	rs150868148	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr19	8000052	.	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.728;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr19	8117869	rs11575008	C	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,31:0.37:84
chr19	8122737	rs2303164	G	A	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.897;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:258,104:0.29:362
chr19	8122767	rs2303165	T	C	1889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=5.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=2.117;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:241,116:0.32:357
chr19	8127075	rs34145389	C	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.735;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr19	8136839	rs73005512	G	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr19	8137102	rs7256904	G	T	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:156,73:0.32:229
chr19	8137850	.	C	CGT,CGTGTGT	757.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=72;set=Intersection	GT:AF:DP	0/1:0.62:63
chr19	8137902	rs7254691	C	T	4172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=-0.896;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:62,103:0.62:165
chr19	8137908	rs28657412	C	T	4522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.43;ReadPosRankSum=-0.986;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:69,124:0.64:193
chr19	8138054	rs7257948	C	A	6296.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:169,301:0.64:470
chr19	8145921	rs2303168	C	T	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:78,141:0.64:219
chr19	8146114	rs2303169	T	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr19	8146510	rs35618038	G	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr19	8148314	rs17160149	A	C	4965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.823;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:102,218:0.68:320
chr19	8151132	rs144887983	C	G	1768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.360;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:324,121:0.27:445
chr19	8151239	rs8103000	G	C	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:62,125:0.67:187
chr19	8151261	rs11665747	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:89,37:0.29:126
chr19	8152725	rs12460643	A	G	3033.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:110,154:0.58:264
chr19	8156221	rs12981294	A	G	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:122,159:0.57:281
chr19	8156260	rs12984611	C	T	5279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-0.149;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:197,265:0.57:462
chr19	8156290	rs8104453	A	G	7310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=0.037;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:247,360:0.59:607
chr19	8156523	rs34758775	T	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr19	8159362	rs7245429	G	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:116,41:0.26:157
chr19	8159409	rs7245552	G	T	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	8160334	rs12608849	G	A	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:198,88:0.31:286
chr19	8160517	rs10413994	A	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	8160812	rs10404258	C	T	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	8161450	rs3829817	C	T	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:57,104:0.65:161
chr19	8165868	rs56182050	G	A	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:140,65:0.32:205
chr19	8167830	rs12986396	A	G	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	8167873	rs56921504	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr19	8168326	rs3865463	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	8168340	rs3865464	T	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	8168399	rs4289098	G	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr19	8171252	rs2126971	A	G	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	8174650	rs3813779	A	G	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=1.488;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:148,57:0.28:205
chr19	8174724	rs11672038	C	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr19	8176009	rs17160196	C	T	11670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=861;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=1.866;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:300,555:0.65:855
chr19	8176458	rs12609936	A	G	2903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=0.358;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:194,83:0.30:277
chr19	8176463	rs11260057	A	G	3185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=3.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.499;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:217,103:0.32:320
chr19	8176569	rs35306870	G	A	8321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-1.091;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:185,393:0.68:578
chr19	8176640	rs12975322	C	T	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:97,162:0.63:259
chr19	8176919	rs4804264	C	T	4996.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:180,248:0.58:428
chr19	8190674	.	C	CA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=5.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.297;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr19	8190750	rs35988441	T	C	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:51,106:0.68:157
chr19	8191238	rs10906993	C	T	9529.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	8191248	rs10906994	A	G	9409.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr19	8191323	rs7260558	T	C	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	8191401	rs3813778	G	A	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.491;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.879;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:214,96:0.31:310
chr19	8196444	rs4804271	C	T	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr19	8196508	rs12974280	G	C	2286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.156;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:323,147:0.31:470
chr19	8197865	rs11666450	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:92,43:0.32:135
chr19	8198103	rs12975055	G	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr19	8200759	rs6603148	G	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	8201051	rs8112525	T	C	33485.77	.	AC=2;AF=1.00;AN=2;DB;DP=1328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,1297:1.00:1297
chr19	8201149	.	C	T	5532.77	.	AC=1;AF=0.500;AN=2;DP=486;set=Intersection	GT:AD:AF:DP	0/1:201,260:0.56:461
chr19	8201249	rs9749144	C	A	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:217,118:0.35:335
chr19	8202944	rs1531547	G	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	8203328	rs7246376	G	A	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:158,66:0.29:224
chr19	8206553	rs73922237	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr19	8206748	rs12162233	G	A	9362.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:191,434:0.69:625
chr19	8207070	rs12162237	G	A	4256.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:137,206:0.60:343
chr19	8209926	rs899208	T	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr19	8212107	rs11669201	C	A	3288.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:350,191:0.35:541
chr19	8315847	rs379983	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	8319206	rs57613908	C	CAAAAAAAA	382.27	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr19	8320656	rs144397154	TGGGGCGGGGC	T	16416.73	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.79;QD=43.43;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr19	8320890	rs2306199	T	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	8326904	rs36259	G	A	11212.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr19	8367033	rs250510	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	8367956	.	C	G	501.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr19	8370120	rs2232778	T	C	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.646;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:74,33:0.31:107
chr19	8376431	rs561	G	A	3591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=0.686;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:96,177:0.65:273
chr19	8386998	rs4147644	T	C	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:81,161:0.67:242
chr19	8387207	rs1057232	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr19	8388169	rs77195150	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=0.239;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	8388410	rs7253567	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	8389768	rs111756439	GTCACAGGTTGAC	G	8304.73	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:128,210:0.62:338
chr19	8397700	rs145917648	AAAAAT	A	557.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	8398099	.	C	T	2964.77	.	AC=1;AF=0.500;AN=2;DP=201;set=Intersection	GT:AD:AF:DP	0/1:61,137:0.69:198
chr19	8398714	rs2009733	A	G	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:71,96:0.57:167
chr19	8398949	rs111751275	CTCGCTGTCGCCA	C	1172.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr19	8399628	rs710949	A	G	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.86;ReadPosRankSum=1.253;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,36:0.61:59
chr19	8399635	rs890853	C	T	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=0.255;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:21,35:0.62:56
chr19	8436164	rs1044250	C	T	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:111,195:0.64:306
chr19	8454098	.	C	CAAA	32.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.91;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr19	8454318	rs28364584	T	C	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.673;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr19	8467235	rs2913968	T	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr19	8467538	rs148680686	C	CTTGTTTTTTTCTTT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.002;QD=4.45;ReadPosRankSum=1.403;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr19	8468337	rs2230876	C	T	6026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=1196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.881;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:811,377:0.32:1188
chr19	8468485	rs2241588	C	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:110,52:0.32:162
chr19	8495765	rs2303180	G	A	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-2.657;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:34,69:0.67:103
chr19	8495887	rs2303179	T	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	8503574	rs11259981	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	8528277	rs3764570	A	G	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=0.034;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr19	8528310	rs8102587	A	G	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	8533504	rs7258281	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	8536373	rs12973706	A	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	8548175	rs1599871	A	C	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=2.084;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:18,49:0.73:67
chr19	8551094	rs2230647	T	C	9476.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr19	8551852	rs11669139	A	G	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	8553630	rs6992	C	T	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	8555886	rs2303110	G	C	8858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.078;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:310,435:0.58:745
chr19	8563456	rs2910435	C	G	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	8564466	rs4239540	C	A	6757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.098;QD=25.50;ReadPosRankSum=2.077;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:100,165:0.62:265
chr19	8564469	rs4990821	C	G	6831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.092;QD=25.12;ReadPosRankSum=1.705;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:102,170:0.62:272
chr19	8564474	rs4239541	G	T	7100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.113;QD=25.00;ReadPosRankSum=1.797;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:109,175:0.62:284
chr19	8564523	rs4804305	T	G	8674.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:147,274:0.65:421
chr19	8567341	rs138708138	A	AC	378.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr19	8567475	rs968502	T	C	6752.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:128,194:0.60:322
chr19	8567500	rs968501	G	A	6226.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:118,166:0.58:284
chr19	8567548	rs968500	A	G	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:63,88:0.58:151
chr19	8575765	rs3111564	C	G	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=0.045;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:22,27:0.55:49
chr19	8576307	rs2910443	A	G	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	8576468	rs2967575	A	C	3634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-0.011;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:93,175:0.65:268
chr19	8576670	rs7175	C	T	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:42,69:0.62:111
chr19	8576862	rs2287865	G	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr19	8576888	rs2042302	C	G	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	8576947	rs73002688	G	T	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	8577868	rs2967578	T	C	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:57,103:0.64:160
chr19	8578000	rs1064010	G	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:41,61:0.60:102
chr19	8578035	rs8100431	T	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:64,49:0.43:113
chr19	8578118	rs1064009	A	G	3163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-0.061;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:71,151:0.68:222
chr19	8578199	rs1141019	T	C	2589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-1.252;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:62,126:0.67:188
chr19	8578860	rs2287864	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:36,52:0.59:88
chr19	8579011	rs2287863	T	C	3311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=1.078;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:113,163:0.59:276
chr19	8579081	rs2287862	C	T	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr19	8591233	rs35536931	G	GTC	510.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	8591572	rs2303687	C	G	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=2.501;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:18,47:0.72:65
chr19	8592207	rs2967774	A	G	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr19	8601051	rs57614495	G	GTC	1951.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:64,74:0.54:138
chr19	8615589	rs4804311	A	G	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:90,164:0.65:254
chr19	8619302	rs34667346	G	GTGA	1039.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr19	8619461	rs2913925	A	G	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:57,111:0.66:168
chr19	8642160	rs4542783	T	C	2015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=1.678;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:228,116:0.34:344
chr19	8642393	rs191148063	G	A	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=0.145;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:30,54:0.64:84
chr19	8645786	rs7252299	A	C	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.913;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	8646014	.	CTTTTTTTTTTTTTTT	C	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.70;ReadPosRankSum=0.085;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr19	8650651	rs73922160	A	G	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr19	8651438	rs187565033	T	C	8813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=0.582;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:235,422:0.64:657
chr19	8651562	rs4476282	A	G	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:149,208:0.58:357
chr19	8657025	rs73922162	G	A	3469.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:69,154:0.69:223
chr19	8657074	rs35484313	C	CAG	1531.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr19	8657092	rs71179860	C	CGGGATGGGGCTGGAAG	1169.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	8657540	rs116796882	T	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr19	8657871	rs34134669	G	C	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr19	8662347	rs5827006	TTGC	T	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	8668885	rs36044688	CT	C	652.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:6,48:0.89:54
chr19	8669873	rs7260282	T	C	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	8669931	rs7255721	G	C	8297.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	8808373	rs4804079	G	T	9025.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr19	8808900	rs10410943	A	G	13796.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr19	8808942	rs2340550	A	G	12424.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr19	8809100	rs62117992	T	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=1.361;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr19	8841558	rs28324	T	C	9280.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	8923117	rs250315	A	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	8932087	rs111962098	G	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.515;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-2.259;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr19	8932092	rs2910347	G	A	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	8953801	rs2969292	T	C	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	8953922	rs2972588	C	T	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	8961772	rs2972591	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	8961981	rs1035442	C	G	13884.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr19	8962315	rs2910353	C	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.717;QD=3.76;ReadPosRankSum=1.960;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:99,38:0.28:137
chr19	8962434	.	C	CTT	218.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.23;QD=18.23;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	8962461	rs1964289	G	C	148.79	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.48;QD=18.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	8974237	rs11670820	G	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.376;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	8976471	rs3764554	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr19	8976504	rs3764553	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr19	8976713	rs3764552	A	G	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-1.474;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:72,62:0.46:134
chr19	8976921	rs11085755	C	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr19	8977514	rs1469077	A	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.146;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-1.771;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr19	8979112	rs73493609	G	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-0.085;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr19	8982084	rs3752139	C	G	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	8982146	rs3752140	T	G	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:86,159:0.65:245
chr19	8986920	rs111523062	CA	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.64;ReadPosRankSum=-0.085;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr19	8987133	rs3764555	T	C	5248.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr19	8987218	rs3764556	G	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:66,85:0.56:151
chr19	8987348	rs150904213	A	AAG	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=-2.112;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr19	8992971	.	T	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-2.512;QD=8.61;ReadPosRankSum=-1.188;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	8992972	.	A	G	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-2.512;QD=10.08;ReadPosRankSum=-1.172;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr19	8992980	.	C	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-2.681;QD=9.47;ReadPosRankSum=-0.380;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	8992981	.	T	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-2.681;QD=9.47;ReadPosRankSum=-0.345;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	8992988	rs371102230	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-2.916;QD=7.68;ReadPosRankSum=-0.235;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr19	8992993	rs114497462	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-3.133;QD=6.89;ReadPosRankSum=0.052;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr19	8992996	.	T	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-3.133;QD=6.79;ReadPosRankSum=-0.206;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr19	8992997	.	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-3.201;QD=6.56;ReadPosRankSum=-0.099;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr19	8993008	.	G	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-3.585;QD=2.16;ReadPosRankSum=0.241;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr19	8993017	rs111468097	G	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-3.930;QD=3.61;ReadPosRankSum=0.389;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr19	8993018	rs61742668	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr19	8993020	.	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-4.091;QD=2.91;ReadPosRankSum=0.423;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr19	8994113	rs2009979	T	C	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	8994285	rs752410	T	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=1.900;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:57,37:0.39:94
chr19	8994373	rs873869	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	8995853	rs11672574	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	8996019	rs73493652	A	T	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:46,91:0.66:137
chr19	8996182	rs56136170	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:59,78:0.57:137
chr19	8997189	rs111427194	T	TGGGAGA	4344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.615;QD=21.30;ReadPosRankSum=0.552;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:94,110:0.54:204
chr19	8997343	rs55785038	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr19	8997415	.	G	A	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.169;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=39.425;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-11.215;QD=6.94;ReadPosRankSum=-4.567;SOR=2.620;set=HC	GT:AD:AF:DP	0/1:127,35:0.22:162
chr19	8997421	.	A	C	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=37.673;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-11.222;QD=6.47;ReadPosRankSum=-3.674;SOR=2.460;set=HC	GT:AD:AF:DP	0/1:136,37:0.21:173
chr19	8997424	.	G	A	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.266;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=33.711;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-11.538;QD=6.16;ReadPosRankSum=-2.756;SOR=2.261;set=HC	GT:AD:AF:DP	0/1:143,38:0.21:181
chr19	8997454	rs76629162	G	A	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=24.535;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-13.083;QD=4.97;ReadPosRankSum=2.999;SOR=1.859;set=HC	GT:AD:AF:DP	0/1:189,42:0.18:231
chr19	8997463	rs73001893	C	T	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=22.049;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-12.969;QD=4.46;ReadPosRankSum=2.117;SOR=1.873;set=HC	GT:AD:AF:DP	0/1:202,42:0.17:244
chr19	8997472	rs113387108	C	T	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=19.674;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-13.425;QD=4.11;ReadPosRankSum=0.258;SOR=1.890;set=HC	GT:AD:AF:DP	0/1:218,42:0.16:260
chr19	8997481	.	C	A	991.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.514;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=19.203;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-14.160;QD=3.46;ReadPosRankSum=-1.463;SOR=1.886;set=HC	GT:AD:AF:DP	0/1:245,42:0.15:287
chr19	8997482	.	C	T	991.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.646;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=19.196;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-14.213;QD=3.43;ReadPosRankSum=-1.648;SOR=1.886;set=HC	GT:AD:AF:DP	0/1:247,42:0.15:289
chr19	8997499	.	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.871;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=7.945;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-13.774;QD=0.88;ReadPosRankSum=-3.664;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:268,27:0.09:295
chr19	8997515	.	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.039;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=11.800;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-13.619;QD=0.21;ReadPosRankSum=-5.926;SOR=1.868;set=HC	GT:AD:AF:DP	0/1:274,20:0.07:294
chr19	8997680	rs56233329	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.32;ReadPosRankSum=0.344;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	8998532	rs57902801	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	8998830	.	G	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.874;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=28.508;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-7.135;QD=7.13;ReadPosRankSum=-0.753;SOR=5.076;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr19	8998832	.	AT	A	336.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.634;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=22.057;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-6.420;QD=4.88;ReadPosRankSum=-1.537;SOR=4.450;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr19	8998834	.	T	G	345.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=22.057;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-6.420;QD=5.01;ReadPosRankSum=-1.362;SOR=4.450;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr19	8998837	.	T	TGA	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=22.245;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-6.332;QD=4.84;ReadPosRankSum=-1.278;SOR=4.388;set=HC	GT:AD:AF:DP	0/1:57,12:0.17:69
chr19	8998839	.	GAC	G	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=16.633;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-5.875;QD=4.20;ReadPosRankSum=-0.814;SOR=3.896;set=HC	GT:AD:AF:DP	0/1:59,9:0.13:68
chr19	8999383	rs79909361	A	G	2861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-11.426;QD=6.80;ReadPosRankSum=0.757;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:326,95:0.23:421
chr19	8999386	rs77049866	A	G	2842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=2.169;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-11.443;QD=6.74;ReadPosRankSum=1.167;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:327,95:0.23:422
chr19	8999429	.	G	T	2064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DP=579;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-3.824;QD=3.58;ReadPosRankSum=-1.336;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:493,83:0.14:576
chr19	8999438	rs77891947	A	T	6716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-11.032;QD=11.29;ReadPosRankSum=-1.239;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:404,191:0.32:595
chr19	8999441	rs80293661	G	A	2707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=5.980;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-10.885;QD=4.57;ReadPosRankSum=0.798;SOR=1.090;set=HC	GT:AD:AF:DP	0/1:492,101:0.17:593
chr19	8999443	.	T	C	2710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DP=596;ExcessHet=3.0103;FS=5.947;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-10.885;QD=4.57;ReadPosRankSum=1.002;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:492,101:0.17:593
chr19	8999449	rs76798407	G	T	6629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=4.448;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-10.844;QD=11.26;ReadPosRankSum=-0.514;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:401,188:0.32:589
chr19	8999453	rs11085765	C	T	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=4.575;QD=1.96;ReadPosRankSum=0.141;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:481,113:0.19:594
chr19	8999478	rs73493659	T	C	4055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=7.296;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-11.218;QD=6.77;ReadPosRankSum=3.198;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:452,147:0.25:599
chr19	8999497	.	G	GACCA	2392.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.284;ClippingRankSum=0.000;DP=608;ExcessHet=3.0103;FS=14.341;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-13.840;QD=4.17;ReadPosRankSum=2.078;SOR=1.947;set=HC	GT:AD:AF:DP	0/1:469,105:0.18:574
chr19	8999498	.	GCTTT	G	1625.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.789;ClippingRankSum=0.000;DP=554;ExcessHet=3.0103;FS=17.462;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-14.591;QD=3.03;ReadPosRankSum=1.363;SOR=2.213;set=HC	GT:AD:AF:DP	0/1:467,69:0.13:536
chr19	8999511	rs79907258	G	A	3356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.046;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=45.844;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-12.824;QD=6.67;ReadPosRankSum=2.039;SOR=3.354;set=HC	GT:AD:AF:DP	0/1:396,107:0.21:503
chr19	8999517	.	T	A	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.327;ClippingRankSum=0.000;DP=487;ExcessHet=3.0103;FS=7.513;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-15.492;QD=2.10;ReadPosRankSum=-1.600;SOR=1.566;set=HC	GT:AD:AF:DP	0/1:429,57:0.12:486
chr19	8999518	rs77650227	A	G	3023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.456;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=36.205;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-12.620;QD=6.26;ReadPosRankSum=1.067;SOR=3.116;set=HC	GT:AD:AF:DP	0/1:384,99:0.20:483
chr19	8999530	.	C	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.647;ClippingRankSum=0.000;DP=453;ExcessHet=3.0103;FS=33.245;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-0.161;QD=0.58;ReadPosRankSum=4.159;SOR=6.762;set=HC	GT:AD:AF:DP	0/1:416,36:0.08:452
chr19	8999531	.	A	G	2396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.733;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=39.790;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-13.390;QD=5.35;ReadPosRankSum=0.754;SOR=3.405;set=HC	GT:AD:AF:DP	0/1:370,78:0.17:448
chr19	8999538	rs78334969	T	C	1977.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.855;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=54.853;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-13.344;QD=4.78;ReadPosRankSum=-0.732;SOR=4.281;set=HC	GT:AD:AF:DP	0/1:343,71:0.17:414
chr19	8999539	rs76810971	T	C	1980.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.557;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=54.853;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-13.207;QD=4.81;ReadPosRankSum=-0.871;SOR=4.262;set=HC	GT:AD:AF:DP	0/1:342,70:0.17:412
chr19	8999540	rs75422108	G	A	1131.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.994;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=32.630;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-15.358;QD=2.77;ReadPosRankSum=-3.214;SOR=3.346;set=HC	GT:AD:AF:DP	0/1:359,49:0.12:408
chr19	8999554	.	C	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.499;ClippingRankSum=0.000;DP=362;ExcessHet=3.0103;FS=76.532;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-14.584;QD=1.64;ReadPosRankSum=-4.637;SOR=6.667;set=HC	GT:AD:AF:DP	0/1:330,31:0.09:361
chr19	8999555	.	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.808;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=43.466;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-18.292;QD=0.17;ReadPosRankSum=-4.064;SOR=5.622;set=HC	GT:AD:AF:DP	0/1:319,17:0.05:336
chr19	8999561	.	G	A	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.671;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=101.176;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-9.943;QD=1.81;ReadPosRankSum=-2.433;SOR=7.262;set=HC	GT:AD:AF:DP	0/1:295,37:0.11:332
chr19	8999575	.	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.425;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=59.040;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-8.475;QD=0.94;ReadPosRankSum=-2.720;SOR=6.166;set=HC	GT:AD:AF:DP	0/1:259,22:0.08:281
chr19	8999588	.	A	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.281;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=39.921;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-6.932;QD=0.32;ReadPosRankSum=-4.634;SOR=4.417;set=HC	GT:AD:AF:DP	0/1:238,20:0.08:258
chr19	8999675	rs11085766	A	C	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr19	9000169	.	C	T	2495.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.578;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=87.947;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-14.793;QD=10.90;ReadPosRankSum=-1.641;SOR=4.673;set=HC	GT:AD:AF:DP	0/1:160,69:0.30:229
chr19	9000170	.	A	G	2531.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=90.456;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-14.889;QD=10.91;ReadPosRankSum=-1.577;SOR=4.709;set=HC	GT:AD:AF:DP	0/1:162,70:0.30:232
chr19	9000185	.	A	G	2959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=119.431;MLEAC=1;MLEAF=0.500;MQ=56.52;MQRankSum=-16.054;QD=10.96;ReadPosRankSum=-2.018;SOR=5.190;set=HC	GT:AD:AF:DP	0/1:187,83:0.31:270
chr19	9000187	.	C	T	3031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DP=280;ExcessHet=3.0103;FS=121.642;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-16.296;QD=10.91;ReadPosRankSum=-1.927;SOR=5.209;set=HC	GT:AD:AF:DP	0/1:193,85:0.31:278
chr19	9000194	.	G	A	3343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=136.971;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-16.791;QD=11.30;ReadPosRankSum=-2.118;SOR=5.453;set=HC	GT:AD:AF:DP	0/1:203,93:0.31:296
chr19	9000205	.	C	A	3184.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=140.038;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-16.976;QD=10.58;ReadPosRankSum=-1.834;SOR=5.473;set=HC	GT:AD:AF:DP	0/1:211,90:0.30:301
chr19	9000206	rs4994075	A	G	3190.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.358;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=140.038;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-16.976;QD=10.60;ReadPosRankSum=-2.275;SOR=5.473;set=HC	GT:AD:AF:DP	0/1:211,90:0.30:301
chr19	9000326	rs35743385	G	C	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,27:0.30:89
chr19	9001822	rs12976111	A	G	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:220,102:0.32:322
chr19	9001833	rs12976122	A	G	3478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=2.051;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:231,98:0.30:329
chr19	9001833	.	ATG	GTA	2723	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=1;MGOF=8;MMLQ=24;MQ=59.52;NF=29;NR=28;PP=2723;QD=20;SC=GTACTCACTCATGGGTCCAGA;SbPval=0.5;Source=Platypus;TC=164;TCF=81;TCR=83;TR=57;WE=9001843;WS=9001812;set=Platypus	GT:AD:AF:DP	0/1:107,57:0.35:164
chr19	9001835	rs12985778	G	A	3391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=1.872;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:229,98:0.30:327
chr19	9001986	rs12461757	C	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	9002113	rs12462672	A	G	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr19	9002493	rs77972891	T	C	3630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.175;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=7.012;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-14.998;QD=10.26;ReadPosRankSum=1.445;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:194,160:0.45:354
chr19	9002504	rs78327556	T	C	3463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.566;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=7.784;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-14.714;QD=9.68;ReadPosRankSum=4.108;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:204,154:0.43:358
chr19	9002519	rs150783178	G	C	3367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.186;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=4.631;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-15.531;QD=9.00;ReadPosRankSum=5.948;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:225,149:0.40:374
chr19	9002576	rs80214581	T	C	1893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=8.009;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-18.945;QD=4.81;ReadPosRankSum=-2.721;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:300,94:0.24:394
chr19	9002587	rs201053591	C	T	2117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=8.858;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-19.586;QD=5.35;ReadPosRankSum=-4.709;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:318,78:0.20:396
chr19	9002597	.	C	T	1921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=7.420;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-19.906;QD=4.79;ReadPosRankSum=-7.276;SOR=1.373;set=HC	GT:AD:AF:DP	0/1:332,69:0.17:401
chr19	9002612	.	TG	GA	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.554;ClippingRankSum=0.000;DP=377;ExcessHet=3.0103;FS=33.512;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-19.191;QD=1.06;ReadPosRankSum=-7.322;SOR=2.877;set=HC	GT:AD:AF:DP	0/1:336,34:0.09:370
chr19	9003217	rs60430468	GA	G	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.632;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=6.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.324;SOR=0.145;set=HC	GT:AD:AF:DP	0/1:26,19:0.42:45
chr19	9003618	rs11085776	C	T	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.909;QD=4.32;ReadPosRankSum=0.291;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:141,57:0.29:198
chr19	9003645	rs11085777	G	A	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:159,69:0.30:228
chr19	9003706	rs11085778	T	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:102,48:0.32:150
chr19	9003749	rs11085779	G	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr19	9005041	rs62118260	T	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr19	9005719	rs4804375	A	G	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:122,69:0.36:191
chr19	9006370	rs79341062	A	G	641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=38.030;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-10.468;QD=2.28;ReadPosRankSum=-0.926;SOR=2.684;set=HC	GT:AD:AF:DP	0/1:227,54:0.19:281
chr19	9006463	rs11668219	C	G	6745.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr19	9006749	rs75444444	C	T	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=-1.585;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:51,97:0.66:148
chr19	9007630	rs73005873	G	A	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	9007748	rs11673136	A	G	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	9009205	.	C	A	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-4.695;QD=9.47;ReadPosRankSum=1.507;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr19	9009206	.	A	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-4.854;QD=8.97;ReadPosRankSum=1.774;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr19	9009211	.	A	G	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=3.874;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-5.282;QD=8.70;ReadPosRankSum=1.417;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr19	9009215	.	C	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=8.202;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-5.735;QD=7.07;ReadPosRankSum=2.133;SOR=2.190;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr19	9009218	.	T	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=10.673;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-6.095;QD=6.21;ReadPosRankSum=2.591;SOR=2.559;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr19	9009223	.	A	G	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=10.591;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-6.377;QD=5.41;ReadPosRankSum=2.961;SOR=2.599;set=HC	GT:AD:AF:DP	0/1:52,13:0.20:65
chr19	9009239	.	A	G	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-7.731;QD=5.35;ReadPosRankSum=1.943;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:77,19:0.20:96
chr19	9009244	.	T	C	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.037;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=3.514;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-8.674;QD=4.52;ReadPosRankSum=2.300;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:96,20:0.17:116
chr19	9009254	rs375943736	A	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-10.398;QD=2.91;ReadPosRankSum=2.583;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:135,22:0.14:157
chr19	9012813	rs4992696	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.306;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=3.936;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-10.321;QD=0.92;ReadPosRankSum=-2.915;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:264,25:0.09:289
chr19	9012816	rs4992695	G	T	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.677;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-8.983;QD=1.78;ReadPosRankSum=-2.461;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:286,31:0.10:317
chr19	9012819	rs4992694	T	A	3260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-16.868;QD=9.82;ReadPosRankSum=-8.597;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:239,93:0.28:332
chr19	9012823	rs4992693	T	C	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.542;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-7.551;QD=1.12;ReadPosRankSum=-2.841;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:322,40:0.11:362
chr19	9012825	.	A	T	1619.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DP=395;ExcessHet=3.0103;FS=3.204;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-10.382;QD=4.19;ReadPosRankSum=-5.322;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:328,59:0.15:387
chr19	9012826	.	T	C	1775.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DP=405;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-11.110;QD=4.50;ReadPosRankSum=-4.734;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:327,68:0.17:395
chr19	9012832	.	T	G	1794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DP=460;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-10.782;QD=3.99;ReadPosRankSum=-4.932;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:371,79:0.18:450
chr19	9012840	rs4992692	G	A	4761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-14.731;QD=10.02;ReadPosRankSum=-9.044;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:303,172:0.36:475
chr19	9012848	rs112005168	G	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-10.716;QD=1.65;ReadPosRankSum=-1.766;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:466,108:0.19:574
chr19	9012894	.	A	AG	2299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;ClippingRankSum=0.000;DP=631;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-10.162;QD=3.77;ReadPosRankSum=1.493;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:517,93:0.15:610
chr19	9012897	.	AG	A	2311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DP=581;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-11.328;QD=3.99;ReadPosRankSum=-0.474;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:486,93:0.16:579
chr19	9012905	.	T	TG	3437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DP=540;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-10.747;QD=6.69;ReadPosRankSum=4.695;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:402,112:0.22:514
chr19	9012908	rs77209900	A	G	2443.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=8.813;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-11.632;QD=4.75;ReadPosRankSum=-6.038;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:425,90:0.17:515
chr19	9012909	.	G	A	2443.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DP=510;ExcessHet=3.0103;FS=8.839;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-11.486;QD=4.81;ReadPosRankSum=-6.504;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:418,90:0.18:508
chr19	9012910	.	GT	G	3431.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DP=501;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-10.594;QD=6.86;ReadPosRankSum=3.410;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:388,112:0.22:500
chr19	9012913	.	G	A	2484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319;ClippingRankSum=0.000;DP=491;ExcessHet=3.0103;FS=10.312;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-11.128;QD=5.07;ReadPosRankSum=-7.618;SOR=1.281;set=HC	GT:AD:AF:DP	0/1:403,87:0.18:490
chr19	9012918	rs75899847	C	T	3473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-10.087;QD=7.38;ReadPosRankSum=2.724;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:365,106:0.23:471
chr19	9012930	rs76135098	C	T	3896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.040;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=8.488;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-15.043;QD=10.79;ReadPosRankSum=-2.740;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:243,118:0.33:361
chr19	9012937	.	A	G	2859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105;ClippingRankSum=0.000;DP=330;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-11.569;QD=8.69;ReadPosRankSum=-1.076;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:242,87:0.26:329
chr19	9012947	.	G	A	2821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-12.281;QD=10.26;ReadPosRankSum=-3.855;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:194,81:0.29:275
chr19	9012958	rs76003547	T	C	2266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-10.321;QD=9.29;ReadPosRankSum=-4.476;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:175,69:0.28:244
chr19	9012977	rs78271560	A	G	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.630;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=12.174;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-10.153;QD=5.82;ReadPosRankSum=-0.997;SOR=2.057;set=HC	GT:AD:AF:DP	0/1:131,24:0.15:155
chr19	9012979	.	G	A	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.557;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=15.367;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-10.612;QD=3.82;ReadPosRankSum=-0.403;SOR=2.367;set=HC	GT:AD:AF:DP	0/1:131,22:0.14:153
chr19	9012982	.	GA	AC	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.820;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=11.357;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-10.667;QD=3.39;ReadPosRankSum=-0.498;SOR=2.092;set=HC	GT:AD:AF:DP	0/1:119,20:0.14:139
chr19	9012995	rs372792987	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=9.696;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-9.450;QD=4.06;ReadPosRankSum=-1.244;SOR=2.226;set=HC	GT:AD:AF:DP	0/1:77,14:0.15:91
chr19	9012999	.	C	CT	291.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.138;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=5.583;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-8.911;QD=3.60;ReadPosRankSum=-1.252;SOR=1.877;set=HC	GT:AD:AF:DP	0/1:69,12:0.15:81
chr19	9013000	.	A	AAAT	255.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=5.567;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-8.742;QD=3.28;ReadPosRankSum=-1.366;SOR=1.680;set=HC	GT:AD:AF:DP	0/1:67,11:0.14:78
chr19	9013016	.	T	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-6.265;QD=1.65;ReadPosRankSum=-0.682;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:38,3:0.07:41
chr19	9014405	rs74199498	C	CT	559.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	9015364	rs202219452	T	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-7.089;QD=0.63;ReadPosRankSum=-0.198;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:339,31:0.08:370
chr19	9015374	.	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447;ClippingRankSum=0.000;DP=385;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-7.243;QD=0.51;ReadPosRankSum=2.405;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:353,31:0.08:384
chr19	9015382	rs370037933	C	T	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=2.384;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-8.466;QD=0.41;ReadPosRankSum=3.359;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:364,31:0.08:395
chr19	9015392	rs200412559	A	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-9.095;QD=0.44;ReadPosRankSum=2.584;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:361,31:0.08:392
chr19	9015409	rs374736705	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-8.274;QD=0.38;ReadPosRankSum=0.390;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:338,30:0.08:368
chr19	9015414	.	G	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-8.028;QD=0.45;ReadPosRankSum=-0.517;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:318,30:0.09:348
chr19	9019306	.	T	A	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=24.514;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-13.957;QD=2.07;ReadPosRankSum=-5.323;SOR=2.342;set=HC	GT:AD:AF:DP	0/1:276,35:0.11:311
chr19	9019313	.	C	G	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;ClippingRankSum=0.000;DP=317;ExcessHet=3.0103;FS=25.042;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-13.983;QD=2.33;ReadPosRankSum=-3.396;SOR=2.238;set=HC	GT:AD:AF:DP	0/1:275,38:0.12:313
chr19	9019315	.	A	C	834.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DP=317;ExcessHet=3.0103;FS=24.044;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-13.556;QD=2.68;ReadPosRankSum=-2.529;SOR=2.139;set=HC	GT:AD:AF:DP	0/1:272,40:0.13:312
chr19	9019320	.	C	G	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.575;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=21.247;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-12.706;QD=2.97;ReadPosRankSum=-2.042;SOR=2.039;set=HC	GT:AD:AF:DP	0/1:256,43:0.14:299
chr19	9019348	.	A	G	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.195;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=28.918;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-9.507;QD=8.33;ReadPosRankSum=-1.264;SOR=2.122;set=HC	GT:AD:AF:DP	0/1:198,68:0.26:266
chr19	9019352	.	T	C	2278.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.283;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=25.285;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-9.467;QD=8.90;ReadPosRankSum=-1.572;SOR=2.018;set=HC	GT:AD:AF:DP	0/1:188,68:0.27:256
chr19	9019353	.	G	T	2290.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.103;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=25.285;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-9.467;QD=8.95;ReadPosRankSum=-1.560;SOR=2.018;set=HC	GT:AD:AF:DP	0/1:188,68:0.27:256
chr19	9019371	.	A	C	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.914;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=78.253;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-8.585;QD=7.77;ReadPosRankSum=0.551;SOR=5.649;set=HC	GT:AD:AF:DP	0/1:154,51:0.25:205
chr19	9019374	.	A	G	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.492;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=85.606;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-8.777;QD=7.64;ReadPosRankSum=0.853;SOR=6.963;set=HC	GT:AD:AF:DP	0/1:151,48:0.24:199
chr19	9019376	.	A	C	1532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.613;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=82.623;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-8.681;QD=8.02;ReadPosRankSum=0.463;SOR=6.852;set=HC	GT:AD:AF:DP	0/1:144,47:0.25:191
chr19	9019377	.	A	C	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.429;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=79.603;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-8.778;QD=8.13;ReadPosRankSum=0.721;SOR=6.810;set=HC	GT:AD:AF:DP	0/1:144,46:0.24:190
chr19	9019378	.	T	C	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.632;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=79.603;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-8.778;QD=7.96;ReadPosRankSum=0.734;SOR=6.810;set=HC	GT:AD:AF:DP	0/1:144,46:0.24:190
chr19	9019605	rs12981679	C	G	1954.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	9020154	rs11882881	A	G	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:51,87:0.63:138
chr19	9020211	rs11882373	C	T	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	9021275	rs7246797	G	C	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	9024758	rs1862463	T	C	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	9025584	rs77811999	T	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=8.566;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-12.535;QD=2.52;ReadPosRankSum=-4.641;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:140,38:0.21:178
chr19	9025604	rs200791776	A	G	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.500;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-13.464;QD=3.47;ReadPosRankSum=-2.740;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:210,71:0.25:281
chr19	9025669	rs200046834	G	A	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.402;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=56.299;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-13.342;QD=1.91;ReadPosRankSum=-2.894;SOR=4.143;set=HC	GT:AD:AF:DP	0/1:254,35:0.12:289
chr19	9025671	.	G	C	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.843;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=75.542;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-13.870;QD=1.97;ReadPosRankSum=-2.010;SOR=6.645;set=HC	GT:AD:AF:DP	0/1:250,29:0.10:279
chr19	9025673	.	G	T	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.434;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=72.790;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-14.860;QD=1.58;ReadPosRankSum=-2.132;SOR=6.576;set=HC	GT:AD:AF:DP	0/1:248,28:0.10:276
chr19	9025676	.	GGC	G	394.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.647;ClippingRankSum=0.000;DP=273;ExcessHet=3.0103;FS=67.145;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-14.656;QD=1.45;ReadPosRankSum=-2.001;SOR=6.449;set=HC	GT:AD:AF:DP	0/1:247,26:0.10:273
chr19	9025679	.	A	AAG	319.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.179;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=65.729;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-14.377;QD=1.22;ReadPosRankSum=-2.327;SOR=6.342;set=HC	GT:AD:AF:DP	0/1:237,26:0.10:263
chr19	9025682	.	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.185;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=62.745;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-14.198;QD=1.19;ReadPosRankSum=-2.993;SOR=6.247;set=HC	GT:AD:AF:DP	0/1:234,25:0.10:259
chr19	9025686	.	A	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.065;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=56.877;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-13.621;QD=1.29;ReadPosRankSum=-3.389;SOR=6.053;set=HC	GT:AD:AF:DP	0/1:221,23:0.09:244
chr19	9025689	.	A	T	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.216;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=57.494;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-13.534;QD=1.12;ReadPosRankSum=-3.687;SOR=6.103;set=HC	GT:AD:AF:DP	0/1:218,23:0.10:241
chr19	9025691	.	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.089;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=51.613;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-13.271;QD=1.12;ReadPosRankSum=-3.296;SOR=5.947;set=HC	GT:AD:AF:DP	0/1:217,21:0.09:238
chr19	9025695	.	A	G	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.290;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=46.126;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-13.794;QD=0.50;ReadPosRankSum=-2.756;SOR=5.652;set=HC	GT:AD:AF:DP	0/1:215,18:0.08:233
chr19	9025698	.	T	G	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.558;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=45.390;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-13.764;QD=0.32;ReadPosRankSum=-3.017;SOR=5.596;set=HC	GT:AD:AF:DP	0/1:214,18:0.08:232
chr19	9025700	.	T	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.462;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=37.276;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-13.220;QD=0.36;ReadPosRankSum=-2.526;SOR=5.245;set=HC	GT:AD:AF:DP	0/1:208,15:0.07:223
chr19	9027101	rs72486385	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr19	9028242	rs199790313	T	C	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=5.457;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-14.552;QD=0.95;ReadPosRankSum=-4.068;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:223,24:0.10:247
chr19	9028245	rs200670536	G	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=3.132;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-15.140;QD=0.70;ReadPosRankSum=-3.453;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:226,20:0.08:246
chr19	9028432	rs10411029	C	T	8745.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr19	9038597	rs12980941	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=1.509;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	9043347	rs10425275	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.868;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr19	9043534	rs35774058	A	AG	515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-0.372;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:38,23:0.38:61
chr19	9045518	rs12984694	T	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	9046876	rs4804378	G	T	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:145,67:0.32:212
chr19	9047267	rs10410169	C	T	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:91,103:0.53:194
chr19	9047305	rs10415818	G	A	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:76,99:0.57:175
chr19	9048035	rs10417358	G	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:47,87:0.65:134
chr19	9048170	rs10417600	G	A	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:30,103:0.77:133
chr19	9048320	rs56334501	C	T	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=0.457;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:141,71:0.33:212
chr19	9048421	rs56194405	T	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:97,31:0.24:128
chr19	9049149	rs12461007	G	A	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:68,96:0.59:164
chr19	9049339	rs11883220	C	G	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	9049396	rs10425044	C	G	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:78,125:0.62:203
chr19	9049910	rs56307190	C	T	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:183,106:0.37:289
chr19	9056930	rs918535	T	G	2921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-0.841;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:68,139:0.67:207
chr19	9056941	rs10410136	A	G	2933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=2.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-1.065;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:70,139:0.67:209
chr19	9056989	rs4804381	C	G	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.224;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-1.722;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:192,73:0.28:265
chr19	9057177	rs185322740	G	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:69,38:0.36:107
chr19	9057408	rs1423051	A	G	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	9057687	rs1895364	A	G	6155.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	9057704	rs12984130	G	T	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:85,141:0.62:226
chr19	9057721	rs2216662	C	T	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:146,84:0.37:230
chr19	9057750	rs12982113	T	A	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:68,136:0.67:204
chr19	9057896	rs12984471	G	C	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:101,160:0.61:261
chr19	9058624	rs11878666	G	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:184,82:0.31:266
chr19	9058942	rs1833778	C	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:146,59:0.29:205
chr19	9059232	rs12710265	T	C	4455.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:123,214:0.64:337
chr19	9059808	rs7508222	A	G	5846.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	9060059	rs12977368	A	C	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:53,109:0.67:162
chr19	9060085	rs4804382	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:94,51:0.35:145
chr19	9060125	rs12972088	G	A	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:43,95:0.69:138
chr19	9060541	rs11882256	C	T	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.129;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:126,69:0.35:195
chr19	9060572	rs56405542	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:92,50:0.35:142
chr19	9060605	rs2194168	G	A	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	9060812	rs1820099	T	C	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	9061559	rs1423052	C	G	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:108,60:0.36:168
chr19	9062415	rs12978757	T	G	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	9062544	rs2547063	T	G	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr19	9066259	rs17000770	T	C	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:66,100:0.60:166
chr19	9066874	rs12609150	G	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:162,81:0.33:243
chr19	9069792	rs1862458	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:114,37:0.25:151
chr19	9069892	rs1862460	A	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:111,55:0.33:166
chr19	9070194	rs1344572	A	G	17147.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:2,671:1.00:673
chr19	9070225	rs1559172	G	C	15605.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr19	9070402	rs12150888	G	T	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:49,113:0.70:162
chr19	9070837	rs2547067	G	A	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	9071763	rs10422567	T	A	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	9071834	rs17000803	G	C	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=0.741;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:78,38:0.33:116
chr19	9072221	rs66498329	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:124,46:0.27:170
chr19	9072296	rs7254970	G	T	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:39,89:0.70:128
chr19	9072875	rs73009098	G	A	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-2.265;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:112,42:0.27:154
chr19	9072975	rs17000816	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:128,55:0.30:183
chr19	9074073	rs72486387	G	A	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:161,68:0.30:229
chr19	9074265	rs10406209	G	A	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:57,117:0.67:174
chr19	9075346	rs2591592	T	A	2165.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:47,103:0.69:150
chr19	9077581	rs73011014	G	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:117,57:0.33:174
chr19	9080335	.	AAGGGAG	A	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=-0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.31;ReadPosRankSum=2.965;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	9080347	rs62682261	GA	G	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=6.27;ReadPosRankSum=2.915;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	9080352	.	GA	G	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=6.05;ReadPosRankSum=2.915;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	9080361	.	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=4.54;ReadPosRankSum=3.035;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr19	9080363	rs61638066	A	G	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=4.30;ReadPosRankSum=3.057;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	9080365	rs60674300	A	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=4.15;ReadPosRankSum=3.057;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	9080367	.	GA	G	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=3.39;ReadPosRankSum=3.077;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr19	9080462	rs2547065	C	G	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:91,59:0.39:150
chr19	9083143	rs7245949	G	A	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:55,124:0.69:179
chr19	9083174	rs7245960	G	A	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:36,143:0.80:179
chr19	9083427	rs1609453	A	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:99,49:0.33:148
chr19	9083457	rs17000886	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:102,43:0.30:145
chr19	9084183	rs1609460	G	A	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	9084216	rs1609459	T	C	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:82,121:0.60:203
chr19	9084299	rs1609458	T	C	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	9085004	rs11085805	T	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:131,74:0.36:205
chr19	9085643	rs1574479	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=2.527;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:66,18:0.21:84
chr19	9086123	rs10402812	A	C	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:54,91:0.63:145
chr19	9086318	rs4520945	G	A	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.440;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:132,54:0.29:186
chr19	9086819	rs1823056	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:132,57:0.30:189
chr19	9087615	rs1596798	T	A	8363.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr19	9087758	rs12611293	G	A	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:153,100:0.40:253
chr19	9088017	rs1596797	T	G	7528.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	9088330	rs17000947	G	A	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:160,71:0.31:231
chr19	9088772	rs17000950	T	C	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:137,81:0.37:218
chr19	9090531	rs12976721	T	C	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:50,81:0.62:131
chr19	9204307	rs4804097	A	G	3440.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:469,216:0.32:685
chr19	9212864	rs4804399	A	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	9213026	rs4804400	T	C	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.203;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.504;QD=5.02;ReadPosRankSum=-0.282;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:192,84:0.30:276
chr19	9213079	rs4804401	A	C	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:230,102:0.31:332
chr19	9213132	rs12610094	A	G	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:249,123:0.33:372
chr19	9225387	rs58243883	G	GA	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=1.063;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr19	9266874	rs139210933	CTG	C	1298.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;MQ=60.87;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr19	9267319	rs3752199	G	T	2287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-1.203;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:52,111:0.68:163
chr19	9268261	rs3829682	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr19	9296664	rs56246934	T	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:182,97:0.35:279
chr19	9324863	rs8109935	G	A	5909.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:165,279:0.63:444
chr19	9346427	rs1968136	T	C	15722.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr19	9346599	rs1985937	C	G	7873.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	9408811	rs55772378	AT	A	376.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=17.94;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	9434872	rs28384491	C	T	10103.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:214,480:0.69:694
chr19	9434930	rs10411624	T	C	12325.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr19	9435305	rs57134914	CA	C	554.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.49;ReadPosRankSum=-0.681;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr19	9435320	rs368039177	GA	G	714.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.945;MLEAC=2;MLEAF=1.000;MQ=60.54;MQRankSum=0.622;QD=12.76;ReadPosRankSum=-1.475;SOR=0.317;set=HC	GT:AD:AF:DP	1/1:5,51:0.91:56
chr19	9448917	rs8113427	T	G	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	9449149	rs8110197	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	9449337	rs8110584	G	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	9449888	rs77267061	A	G	5060.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:224,256:0.53:480
chr19	9452026	rs55837495	ACT	A	2433.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.290;QD=24.10;ReadPosRankSum=-0.780;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:2,99:0.98:101
chr19	9461461	.	C	CT	31	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5051;HP=11;HapScore=2;MGOF=13;MMLQ=26;MQ=56.92;NF=3;NR=0;PP=31;QD=13.3333333333;SC=TAATACTACACTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=3;WE=9461469;WS=9461456;set=Platypus	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	9489132	rs2304110	C	T	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	9490358	rs12461520	C	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	9490814	rs2217652	C	T	7049.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr19	9491210	rs1347165	C	G	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	9492141	rs3826783	C	T	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr19	9492370	rs2230752	A	T	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	9524185	rs2241356	A	G	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	9582091	.	T	A	541.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=-1.478;QD=12.60;ReadPosRankSum=0.209;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr19	9582092	rs3068759	TAAAA	T,AAAAA	1425.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.77;QD=36.56;SOR=1.096;set=HC	GT:AD:AF:DP	1/2:0,21,18:0.54,0.46:39
chr19	9582164	rs5827059	G	GA	206.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	9583742	rs10401559	A	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	9583804	rs10408343	T	C	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:38,72:0.65:110
chr19	9646137	rs888870	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr19	9646739	rs888872	C	G	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	9646862	rs2042199	T	G	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:63,155:0.71:218
chr19	9646898	rs2042200	G	A	5115.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:108,239:0.69:347
chr19	9673271	rs147918159	CTCT	C	1006.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:58,29:0.33:87
chr19	9678535	rs1559200	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr19	9678732	rs35536068	CT	C	1071.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr19	9678748	rs12462832	T	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr19	9721401	rs28445940	A	T	4599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.298;QD=13.45;ReadPosRankSum=-1.685;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:123,219:0.64:342
chr19	9768925	rs10418705	A	G	4933.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:131,230:0.64:361
chr19	9769913	rs2287843	G	A	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr19	9771286	rs111723152	G	GA	1227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.818;QD=7.97;ReadPosRankSum=-0.745;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:65,89:0.58:154
chr19	9801440	rs112014279	TCTCTC	T	4141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-0.827;QD=21.02;ReadPosRankSum=-0.080;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:88,109:0.55:197
chr19	9804424	rs16981648	T	G	6834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.441;QD=14.30;ReadPosRankSum=-0.848;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:163,315:0.66:478
chr19	9868278	rs10420364	T	C	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:106,138:0.57:244
chr19	9868404	rs10414485	C	T	4427.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:158,214:0.58:372
chr19	9873820	rs60184154	CA	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=2.051;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	9922223	rs17849496	G	A	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:60,115:0.66:175
chr19	9964823	rs8111802	A	G	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	9964946	rs11556088	G	A	6011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.92;ReadPosRankSum=0.476;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:150,282:0.65:432
chr19	9968139	rs11556087	G	A	2679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=0.952;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:337,160:0.32:497
chr19	9968434	rs2303100	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:95,51:0.35:146
chr19	10047129	.	CCCGG	C	815.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=27.19;ReadPosRankSum=0.137;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr19	10071063	rs10406152	T	C	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-2.087;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr19	10071347	rs2277969	C	T	7843.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:221,369:0.63:590
chr19	10071634	rs918542	T	C	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	10071669	rs2277968	C	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr19	10077158	rs3745582	C	A	7522.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr19	10077419	rs3745584	C	G	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	10077931	rs3786698	C	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	10078171	rs3074540	TCACA	T	5312.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.262;QD=34.95;ReadPosRankSum=0.892;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:4,148:0.97:152
chr19	10078208	rs2059144	C	T	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	10079013	rs3815747	G	C	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	10079093	rs3815746	C	T	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	10080410	rs2277965	C	G	11384.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr19	10080619	rs57674179	A	AG	3426.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.269;QD=29.29;ReadPosRankSum=0.242;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:2,115:0.98:117
chr19	10081193	rs62104327	T	A	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	10081200	rs62104328	T	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.67;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	10081276	rs1895371	C	G	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	10083510	rs33996380	CA	C	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	10084292	rs2287813	C	G	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	10084422	rs2287812	C	T	11426.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr19	10084551	rs2287811	T	G	10554.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr19	10085054	rs3815745	G	A	12397.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.926;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=0.429;SOR=0.312;set=HC	GT:AD:AF:DP	1/1:1,484:1.00:485
chr19	10087200	rs2287810	C	T	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	10088271	rs2161468	C	G	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	10089262	rs12610207	G	A	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	10090467	.	G	GA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-1.933;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr19	10090634	rs12609337	A	G	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	10091267	rs144086896	A	ATC,ATCTC	3306.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=88;set=Intersection	GT:AF:DP	1/2:0.12,0.88:78
chr19	10091294	.	TCACA	T,TCA	4362.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.61;ReadPosRankSum=0.779;SOR=1.008;set=HC	GT:AD:AF:DP	1/2:7,20,131:0.13,0.83:158
chr19	10096650	rs1862474	T	C	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	10096686	rs1862473	G	A	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	10097187	rs60604169	G	GC	24349.73	.	AC=2;AF=1.00;AN=2;DB;DP=791;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=32.00;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,761:1.00:761
chr19	10097443	rs111955359	T	TA,TAA	2504.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.80;MQRankSum=-0.215;QD=24.80;ReadPosRankSum=1.959;SOR=0.381;set=HC	GT:AD:AF:DP	1/2:3,22,76:0.22,0.75:101
chr19	10097536	rs8113693	G	T	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	10097554	rs3214451	A	AG	1388.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	10099744	rs11879755	C	T	8168.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.15;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	10099748	rs11883111	T	C	8249.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	10099910	rs2287805	C	T	17360.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,687:1.00:687
chr19	10100061	rs2287804	C	A	11639.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.676;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.92;ReadPosRankSum=-1.139;SOR=0.518;set=HC	GT:AD:AF:DP	1/1:1,448:1.00:449
chr19	10102567	rs7251453	G	A	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	10102676	rs7252953	A	G	5873.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	10103583	rs2010448	C	T	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	10104154	rs2277964	G	T	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	10104272	rs2277963	G	C	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	10106671	rs3745592	C	G	9465.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	10106936	rs1559186	G	C	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr19	10107455	rs139398421	A	AAG	800.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr19	10108714	rs7254800	G	A	20017.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,793:1.00:793
chr19	10108929	rs3745596	C	T	2111.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	10112148	rs12980478	T	A	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=0.810;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:22,88:0.80:110
chr19	10112346	rs2287803	T	C	13448.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr19	10114252	rs61742765	C	G	8667.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr19	10114740	rs62104337	T	A	5711.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	10116076	rs11085529	G	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	10116375	rs2303099	G	T	14726.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr19	10116703	rs11085530	A	G	10808.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,425:1.00:425
chr19	10120887	rs8108121	C	G	4608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.303;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=3.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-3.506;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:201,242:0.55:443
chr19	10129262	rs1644733	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	10129552	rs1122206	C	G	5194.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:108,245:0.69:353
chr19	10131756	rs117289720	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr19	10131849	rs35664342	C	CT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.208;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chr19	10131852	rs2255079	A	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-1.358;SOR=1.249;set=HC	GT:AD:AF:DP	0/1:27,48:0.64:75
chr19	10131866	rs2016307	A	T,C	3245.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=36.47;SOR=1.204;set=HC	GT:AD:AF:DP	1/2:0,55,34:0.62,0.38:89
chr19	10131999	rs1644731	T	C	14675.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.25;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,394:1.00:394
chr19	10131999	.	TG	CA,CG	1470	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=26;MQ=60.0;NF=56,101;NR=50,86;PP=1470,1150;QD=14.3723384421;SC=CAGGTTTCTATGGCTGAGTTC;SbPval=0.49;Source=Platypus;TC=191;TCF=103;TCR=88;TR=106,187;WE=10132008;WS=10131989;set=Platypus	GT:AF:DP	0/1:0.55:191
chr19	10132000	rs77833898	G	A	4904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=0.548;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:163,238:0.59:401
chr19	10149223	rs16997792	A	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr19	10157743	rs77259842	C	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	10160578	rs11085554	C	T	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:132,67:0.34:199
chr19	10165867	rs10425181	C	T	5707.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:116,268:0.70:384
chr19	10165932	rs8113341	A	G	12262.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr19	10166375	rs10403787	G	A	9265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=-0.230;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:260,438:0.63:698
chr19	10169208	rs17211059	G	A	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:57,110:0.66:167
chr19	10169477	rs11667515	G	A	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:76,216:0.74:292
chr19	10192425	rs112439574	G	GGAA	1347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.835;QD=21.74;ReadPosRankSum=1.597;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:23,39:0.63:62
chr19	10200761	rs2232066	C	G	8019.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:275,374:0.58:649
chr19	10203171	rs15723	A	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr19	10218408	rs2305790	G	A	6051.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:144,285:0.66:429
chr19	10220536	.	C	T	10951.77	.	AC=1;AF=0.500;AN=2;DP=793;set=Intersection	GT:AD:AF:DP	0/1:262,518:0.66:780
chr19	10225682	rs3816556	G	C	4162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=1.132;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:91,192:0.68:283
chr19	10229240	rs61403454	CA	C	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.869;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.292;QD=2.22;ReadPosRankSum=3.482;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:52,32:0.38:84
chr19	10246764	.	AC	A	8751.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.86;ReadPosRankSum=-0.533;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:179,285:0.61:464
chr19	10251048	.	AT	A	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=4.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=2.663;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr19	10251747	rs2290684	A	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:81,46:0.36:127
chr19	10257245	rs2288349	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr19	10265248	rs2114724	TG	CA	12271.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;JOINED;set=Intersection	GT:AD:AF:DP	0/1:125,302:0.71:427
chr19	10265312	rs721186	T	C	12556.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr19	10267077	rs2228611	T	C	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:77,153:0.67:230
chr19	10270746	rs3079962	GA	G	1731.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:64,119:0.65:183
chr19	10273296	rs5827088	GA	G	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.706;QD=5.27;ReadPosRankSum=-0.843;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:30,48:0.62:78
chr19	10334443	rs2116941	A	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	10334663	rs2116942	T	G	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.677;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:153,64:0.29:217
chr19	10369086	rs17000211	C	T	11818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=933;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=1.411;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:360,566:0.61:926
chr19	10370490	rs1059840	T	A	6834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=1209;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-0.797;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:792,400:0.34:1192
chr19	10370542	rs11115	C	T	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:373,162:0.30:535
chr19	10425995	.	GT	G	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.272;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr19	10433576	rs184446025	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	10444826	rs2278442	G	A	12030.77	.	AC=1;AF=0.500;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	0/1:257,566:0.69:823
chr19	10449392	rs2304240	A	G	6475.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	10464138	rs12720359	C	G	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-0.095;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:70,37:0.35:107
chr19	10464687	rs280497	A	G	6480.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	10472933	rs280519	A	G	10296.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,407:1.00:407
chr19	10475652	rs2304256	C	A	10893.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr19	10475760	rs12720270	G	A	5328.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	10477067	rs34725611	A	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	10561261	.	A	AT	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.407;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:72,34:0.32:106
chr19	10577843	rs1051738	C	A	11067.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr19	10600442	rs1048290	G	C	9480.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr19	10625067	rs6511701	A	C	2220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.666;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:319,141:0.31:460
chr19	10659804	rs35786570	C	CT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.484;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:80,23:0.22:103
chr19	10665691	rs10419405	T	C	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	10665695	rs10413128	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	10665912	rs6146467	C	CCCGCCCTGCCCGCAGCGCACCTGGCT	4431.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=1.804;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.000;QD=29.74;ReadPosRankSum=-1.339;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:5,144:0.97:149
chr19	10668383	rs3745256	T	C	21757.77	.	AC=2;AF=1.00;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	1/1:1,838:1.00:839
chr19	10668452	rs3745255	A	G	16757.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr19	10668953	rs875569	G	A	9129.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr19	10669032	rs892084	T	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	10670451	rs11672122	T	C	14791.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr19	10670992	rs3745249	C	T	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	10671585	rs11672425	A	G	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr19	10676343	rs3745246	A	T	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	10676423	rs3745245	G	A	10717.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr19	10676487	rs61702518	G	GC	13304.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.000;QD=18.69;ReadPosRankSum=3.210;SOR=0.686;set=HC	GT:AD:AF:DP	1/1:95,617:0.87:712
chr19	10676681	rs3218222	T	C	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	10679067	rs33926515	GAGA	G	4529.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	10679240	rs1968445	C	G	10256.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr19	10685859	rs1560712	G	C	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	10689691	.	CT	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-1.291;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr19	10690557	rs10426276	G	C	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	10713322	rs74436647	G	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	10736181	rs139154013	G	A	111.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	10794307	.	T	C	6678.77	.	AC=1;AF=0.500;AN=2;DP=513;set=Intersection	GT:AD:AF:DP	0/1:187,319:0.63:506
chr19	10823940	rs11672431	G	T	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	10824435	rs35323929	CT	C	410.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=-0.608;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr19	10907286	rs34516961	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:151,45:0.23:196
chr19	10907425	rs11672991	T	A	8889.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:168,422:0.72:590
chr19	10939792	rs2229920	T	C	6128.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:219,292:0.57:511
chr19	10961273	rs11085749	G	A	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,229:0.99:231
chr19	10969134	rs34464972	G	A	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr19	10970558	rs8100581	A	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	11019994	rs4804546	T	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	11020081	rs12976693	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	11030664	rs2288843	A	G	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:67,128:0.66:195
chr19	11031449	.	A	AG	5093.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DP=862;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=3.081;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:572,242:0.30:814
chr19	11031464	rs2288842	C	G	8675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=930;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.547;QD=9.49;ReadPosRankSum=2.458;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:644,270:0.30:914
chr19	11038843	rs892010	G	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	11095896	rs78732262	T	C	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:44,85:0.66:129
chr19	11096851	rs111447132	A	G	6581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-0.585;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:179,318:0.64:497
chr19	11097450	rs11669948	C	T	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr19	11101993	rs17001073	G	A	2808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-0.775;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:103,137:0.57:240
chr19	11105593	rs17001075	A	G	4805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-0.674;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:113,233:0.67:346
chr19	11105608	rs7935	T	C	9427.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr19	11106600	rs11672232	C	T	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	11106790	rs11669202	T	C	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	11107085	rs45471592	G	A	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:116,189:0.62:305
chr19	11107133	rs2304087	T	C	7297.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr19	11107295	rs45618443	G	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr19	11113651	rs17001078	T	C	2646.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:74,124:0.63:198
chr19	11113902	rs2288844	G	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr19	11114206	rs17766161	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=9.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.810;SOR=0.023;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	11118711	rs17001090	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:38,54:0.59:92
chr19	11132080	rs12232780	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.680;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	11134090	rs12611191	A	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:95,41:0.30:136
chr19	11136215	rs2075021	C	G	13791.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr19	11136315	rs2075022	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:63,35:0.36:98
chr19	11136857	rs1019193	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	11149129	rs11668058	G	A	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr19	11168896	rs8104480	A	G	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	11170839	rs7275	T	C	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	11200412	rs12981050	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr19	11221454	rs2738442	T	C	22716.77	.	AC=2;AF=1.00;AN=2;DB;DP=917;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,891:1.00:891
chr19	11227554	rs1799898	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	11230650	rs145643854	GAAAC	G	1030.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=0.842;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr19	11238492	rs12459476	A	G	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:17,69:0.80:86
chr19	11238548	rs2569538	A	G	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	11241915	rs6413504	A	G	4269.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:101,200:0.66:301
chr19	11242307	rs2738464	G	C	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	11258593	rs372171481	AAAAAAAAAAAAAAG	A	984.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=4.452;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:187,99:0.35:286
chr19	11266584	rs892114	A	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	11277232	rs4804573	G	A	2050.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:149,110:0.42:259
chr19	11285390	rs440677	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr19	11303459	rs35706290	GC	G	7106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.154;QD=27.02;ReadPosRankSum=2.058;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:80,183:0.70:263
chr19	11303469	rs7254270	C	G	7433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.420;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.301;QD=22.94;ReadPosRankSum=4.099;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:116,208:0.64:324
chr19	11303943	rs3745681	A	G	2504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=1.249;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:489,175:0.26:664
chr19	11310920	rs8101345	C	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	11313256	rs3745682	G	A	7419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=1076;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=0.054;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:654,417:0.39:1071
chr19	11314807	rs3217390	CTGGGGATGAGGAG	C	4319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.886;QD=24.97;ReadPosRankSum=4.543;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:63,110:0.64:173
chr19	11319491	rs8409	G	A	9697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-0.060;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:271,466:0.63:737
chr19	11324890	rs12609620	T	C	1278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.313;QD=13.32;ReadPosRankSum=0.561;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:36,60:0.62:96
chr19	11325417	rs2163830	A	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr19	11325924	rs11673129	C	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr19	11326119	rs2304155	A	G	15118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.39;ReadPosRankSum=-0.663;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:221,399:0.64:620
chr19	11326125	rs2304154	C	T	14695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=0.205;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:218,363:0.62:581
chr19	11326629	rs10403991	C	A	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	11327608	rs4804151	T	C	4679.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:162,227:0.58:389
chr19	11327626	rs4804152	A	G	5164.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:192,249:0.56:441
chr19	11332505	rs3826815	C	T	5462.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:206,271:0.57:477
chr19	11332570	rs3810307	T	A	7173.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:232,355:0.60:587
chr19	11333358	rs12971537	GA	TT	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr19	11333596	rs3810308	T	C	4489.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:74,206:0.74:280
chr19	11343795	rs17699089	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr19	11346155	rs56322906	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	11346252	rs6511729	A	C	2182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=0.831;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:76,105:0.58:181
chr19	11347493	rs737337	T	C	7575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=-0.078;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:211,373:0.64:584
chr19	11347657	rs737338	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr19	11348098	rs34301174	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr19	11348521	rs3745683	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr19	11350340	rs892066	C	G	4777.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:139,228:0.62:367
chr19	11350488	rs2278426	C	T	2717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=0.192;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:75,131:0.64:206
chr19	11350874	rs145464906	C	T	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr19	11358700	rs4804579	T	C	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:73,137:0.65:210
chr19	11358799	rs12978266	G	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:159,64:0.29:223
chr19	11363146	rs8113582	A	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:99,61:0.38:160
chr19	11364495	rs7252293	C	T	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.370;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr19	11406839	rs453766	C	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	11406952	rs374409	A	G	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=-0.767;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:65,108:0.62:173
chr19	11409061	rs377665	C	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr19	11409494	rs423304	G	A	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:55,105:0.66:160
chr19	11409684	rs422496	A	G	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:84,183:0.69:267
chr19	11411868	rs420703	C	A	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:23,61:0.73:84
chr19	11417200	rs322151	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr19	11422998	rs56982210	TA	T	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=8.229;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.853;QD=3.95;ReadPosRankSum=2.242;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:36,33:0.48:69
chr19	11436302	rs56363898	A	AG	3207.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=33.41;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	11447769	.	C	CA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-1.329;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:88,20:0.19:108
chr19	11459665	rs78738753	G	GA	2775.73	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:251,104:0.29:355
chr19	11461834	rs118019382	C	T	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=0.000;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:42,27:0.39:69
chr19	11473415	rs12983706	C	T	2669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=-0.094;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:76,128:0.63:204
chr19	11493633	.	C	A	1400.77	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,63:0.64:99
chr19	11495173	.	G	GT	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.206;QD=0.80;ReadPosRankSum=1.117;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:185,38:0.17:223
chr19	11526759	rs160838	G	A	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	11534503	.	TGG	T	13056.73	.	AC=2;AF=1.00;AN=2;DP=372;set=Intersection	GT:AD:AF:DP	1/1:2,346:0.99:348
chr19	11541712	rs34094	T	C	11948.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr19	11541933	.	C	CT	103.74	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	11557235	rs35753565	A	AG	4396.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	11558052	rs160840	T	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	11558240	rs186375	T	C	15608.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=25.59;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,610:1.00:610
chr19	11558340	.	AGAGGAG	A,AGAG	11805.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=431;set=Intersection	GT:AF:DP	1/2:0.09,0.90:298
chr19	11558451	rs111813645	A	G	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	11558471	rs148197108	G	A	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	11559158	rs160841	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	11559489	rs45626947	C	T	6654.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	11565264	.	TTC	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.359;QD=0.83;ReadPosRankSum=0.331;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:69,10:0.13:79
chr19	11565284	rs35334288	TTC	T	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.542;QD=1.80;ReadPosRankSum=0.932;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:84,16:0.16:100
chr19	11569397	rs61744781	G	A	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr19	11617344	rs71166605	CT	C	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=11.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.916;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr19	11624491	rs4804168	C	G	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	11660002	.	C	CA	210	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=9;HapScore=3;MGOF=8;MMLQ=20;MQ=59.64;NF=8;NR=2;PP=210;QD=22.4;SC=GACTCCGTCTCAAAAAAAAAT;SbPval=0.92;Source=Platypus;TC=24;TCF=15;TCR=9;TR=10;WE=11660020;WS=11659992;set=Platypus	GT:AD:AF:DP	1/1:14,10:0.42:24
chr19	11660012	rs8100751	T	A	416.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=2.266;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr19	11688200	rs2071485	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr19	11708361	rs11551815	C	T	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:143,106:0.43:249
chr19	11708464	rs72997090	G	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:325,141:0.30:466
chr19	11725823	rs1969533	A	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=1.272;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	11725826	rs3923752	A	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=1.271;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	11727384	rs4411616	G	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-1.207;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	11727503	rs4545929	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr19	11728802	rs4804611	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr19	11795897	rs286298	C	G	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr19	11796869	rs286299	G	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:143,68:0.32:211
chr19	11891003	rs799193	G	A	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:62,142:0.70:204
chr19	11943697	rs400106	G	A	11453.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr19	11998777	rs3810314	C	T	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:253,154:0.38:407
chr19	12014820	rs28588743	C	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:64,26:0.29:90
chr19	12015545	rs111999105	G	A	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:106,50:0.32:156
chr19	12037544	rs279236	A	G	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-1.654;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:84,47:0.36:131
chr19	12057916	rs58336952	A	G	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:153,89:0.37:242
chr19	12058572	rs192494	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	12059467	rs73509026	C	G	2685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.503;QD=5.71;ReadPosRankSum=-0.468;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:313,157:0.33:470
chr19	12076060	rs7250805	G	C	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:99,49:0.33:148
chr19	12089903	rs112017572	G	A	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:134,87:0.39:221
chr19	12145645	rs61369780	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.583;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr19	12146370	rs3745672	T	C	2547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=1.278;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:227,143:0.39:370
chr19	12154799	rs67102109	G	C	4364.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:186,208:0.53:394
chr19	12157253	rs10417006	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:48,13:0.21:61
chr19	12157334	rs4804176	T	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	12185102	rs7250239	G	A	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	12186148	rs10424893	T	C	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	12186611	rs7259684	A	G	2313.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:88,108:0.55:196
chr19	12186732	rs76842919	A	G	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:145,103:0.42:248
chr19	12186761	rs7259845	A	G	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	12186857	rs6511763	G	C	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	12186921	rs8102258	TG	CT	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;JOINED;set=Intersection	GT:AD:AF:DP	0/1:117,61:0.34:178
chr19	12187210	rs6511764	A	G	12713.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr19	12187861	rs10426017	T	G	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	12191233	rs17001758	A	G	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:103,160:0.61:263
chr19	12204632	rs201445293	GT	G	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.916;SOR=1.457;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr19	12204801	.	G	T	949.77	.	AC=1;AF=0.500;AN=2;DP=200;set=Intersection	GT:AD:AF:DP	0/1:134,61:0.31:195
chr19	12222259	rs73000467	G	A	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:56,96:0.63:152
chr19	12222381	rs1866382	C	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	12222861	rs1975349	T	C	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	12224172	rs8109273	T	C	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:42,114:0.73:156
chr19	12247731	rs12608894	A	G	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:204,131:0.39:335
chr19	12253327	rs3760779	C	T	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:115,65:0.36:180
chr19	12256912	rs7258368	C	T	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:168,90:0.35:258
chr19	12267292	rs269823	T	C	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:155,83:0.35:238
chr19	12296819	rs12610074	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:122,73:0.37:195
chr19	12297369	rs8111785	G	T	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.058;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:69,30:0.30:99
chr19	12360647	rs10411611	A	G	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	12383090	rs112612717	T	C	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=0.333;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	12383540	rs56056044	G	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:71,31:0.30:102
chr19	12384580	rs11879168	T	C	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:207,115:0.36:322
chr19	12385749	rs2459040	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	12402112	rs2458999	C	T	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.70;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	12405552	rs386901	T	C	27845.77	.	AC=2;AF=1.00;AN=2;DB;DP=1068;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,1059:1.00:1059
chr19	12460517	rs141143740	A	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr19	12502457	rs4804669	A	G	3445.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:385,204:0.35:589
chr19	12541532	rs10422063	C	A	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:317,141:0.31:458
chr19	12541547	rs10402252	T	G	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:270,137:0.34:407
chr19	12542772	rs1134389	C	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=-0.173;QD=4.41;ReadPosRankSum=0.082;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:82,32:0.28:114
chr19	12542848	rs4804692	G	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=48.03;MQRankSum=-2.332;QD=3.69;ReadPosRankSum=-1.428;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr19	12542851	rs4804693	AT	GC	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.525;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.754;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.41;MQRankSum=-2.045;QD=3.88;ReadPosRankSum=-0.549;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr19	12543333	rs3979432	C	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.765;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=8.243;MLEAC=1;MLEAF=0.500;MQ=46.65;MQRankSum=-2.267;QD=2.18;ReadPosRankSum=0.550;SOR=2.780;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr19	12551616	rs35084134	C	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:116,54:0.32:170
chr19	12551715	rs11881297	A	C	5826.77	.	AC=1;AF=0.500;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	0/1:646,344:0.35:990
chr19	12576049	rs7259240	G	A	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=4.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=0.414;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:201,95:0.32:296
chr19	12576573	rs10404972	G	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=1.653;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	12662318	rs79749579	G	GC	12876.73	.	AC=2;AF=1.00;AN=2;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.35;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr19	12720024	rs74777066	G	A	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-0.169;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:66,113:0.63:179
chr19	12759018	.	AGGCGGCGCCGCCACCCGGGGCCAGCACCACCTGAGG	A	1409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=17.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.471;SOR=2.316;set=HC	GT:AD:AF:DP	0/1:122,43:0.26:165
chr19	12760287	rs12984441	A	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-0.966;QD=8.10;ReadPosRankSum=0.896;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	12760291	rs36018312	CT	C	63.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;QD=10.62;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	12760664	rs3815914	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr19	12763350	rs71168621	C	CT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.318;QD=2.85;ReadPosRankSum=-0.869;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr19	12768391	rs73002392	G	A	1505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-0.533;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:197,98:0.33:295
chr19	12768843	rs34324185	G	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:97,54:0.36:151
chr19	12772090	rs1133330	C	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:103,47:0.31:150
chr19	12772165	rs1054487	G	A	1868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-0.928;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:160,106:0.40:266
chr19	12772263	rs2303731	T	C	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.386;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:107,63:0.37:170
chr19	12774208	rs1054486	G	C	2605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.248;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:438,175:0.29:613
chr19	12787002	rs34820996	G	GAGAC	3348.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	12876278	rs1205169	C	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=1.678;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	12876964	rs897804	G	C	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	12939792	rs1466306	T	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	12958360	rs2290689	T	C	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	12958697	rs2290688	T	C	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	12962648	rs7250751	A	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	12963143	rs1078264	T	C	2768.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	12963285	rs2077544	C	T	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	12975599	rs2242512	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	12976481	rs150724539	AAAC	A	2834.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	12985576	rs11085822	A	G	7267.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr19	12989560	rs2293682	G	A	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	12996740	rs2072597	A	G	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	13010520	rs8012	A	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	13029188	rs2965214	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	13030939	.	AT	A	135	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=27;MQ=56.57;NF=1;NR=2;PP=135;QD=46.0;SC=ACACACACACATAATTATATT;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3;WE=13030947;WS=13030929;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	13030940	rs8104603	T	C	71.41	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=17.85;ReadPosRankSum=0.319;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr19	13030941	.	A	ACACACACAC	62.37	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=15.59;ReadPosRankSum=0.319;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr19	13031210	rs2967897	T	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	13039284	rs2293683	A	G	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	13044544	rs2974750	C	A	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	13081089	rs11670895	G	A	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:154,100:0.39:254
chr19	13211843	rs117072928	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr19	13218799	rs71168652	CT	C	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-1.230;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr19	13220703	rs35601737	C	G	5320.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:268,263:0.50:531
chr19	13249244	rs8112067	A	G	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr19	13255536	rs2304095	T	C	5775.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:260,284:0.52:544
chr19	13260240	.	A	AAAAG	1546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=2.658;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:44,64:0.59:108
chr19	13260256	rs61378403	G	A	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.458;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:131,55:0.30:186
chr19	13317490	rs143342886	GTTA	G	5401.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	13318672	.	CCTGCTGCTGCTGCTGCTG	C,CCTGCTGCTGCTG	1652.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=4.025;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;MQRankSum=0.377;QD=34.43;SOR=1.009;set=HC	GT:AD:AF:DP	1/2:1,18,29:0.38,0.60:48
chr19	13318982	rs148672975	AGGAGGG	A	896.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=12.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.42;ReadPosRankSum=0.385;SOR=1.572;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr19	13318988	.	GGGAGGGGGAGGAGGAGGA	G	418.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=10.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=-0.477;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr19	13319693	rs16051	A	G	5306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=802;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-3.418;QD=7.37;ReadPosRankSum=0.973;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:413,307:0.43:720
chr19	13319989	rs10413221	T	C	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	13320002	rs2304093	C	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr19	13322822	rs3217380	AG	A	379.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr19	13323124	rs16048	T	G	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:147,116:0.44:263
chr19	13323641	rs370860384	TAC	T	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	13335300	rs71168691	CAAA	C	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.195;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr19	13335432	rs3816027	G	A	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:218,176:0.45:394
chr19	13338180	rs143245670	AAAG	A	1055.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.070;QD=7.23;ReadPosRankSum=0.192;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:77,69:0.47:146
chr19	13338392	rs150995972	C	T	3434.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:118,160:0.58:278
chr19	13339417	rs36088930	GAGAT	G	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr19	13341037	rs16042	G	A	4520.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:198,221:0.53:419
chr19	13345616	.	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.054;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	13345657	rs3765012	C	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr19	13355900	rs16039	T	G	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	13356150	rs16035	T	G	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:2,338:0.99:340
chr19	13368344	rs374555263	G	A	3932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=1.743;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:188,195:0.51:383
chr19	13387904	rs16030	A	G	4898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-0.915;QD=8.49;ReadPosRankSum=-0.871;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:313,264:0.46:577
chr19	13397461	rs199793367	G	C	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:102,130:0.56:232
chr19	13616693	rs16003	C	T	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=-0.769;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:98,69:0.41:167
chr19	13879622	rs346152	T	C	7721.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	13883099	rs1469071	A	G	5843.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:363,298:0.45:661
chr19	13885215	rs346156	C	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr19	13900059	rs62111900	A	G	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=1.049;QD=5.96;ReadPosRankSum=-0.262;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:57,30:0.34:87
chr19	13910712	.	C	T	2440.77	.	AC=1;AF=0.500;AN=2;DP=230;set=Intersection	GT:AD:AF:DP	0/1:108,115:0.52:223
chr19	14020573	rs12971500	T	C	5367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=2.087;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:315,275:0.47:590
chr19	14023495	rs8111764	T	C	2061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.009;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:82,100:0.55:182
chr19	14029269	rs2305776	A	C	6967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=0.476;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:396,361:0.48:757
chr19	14029592	rs200121704	C	T	1452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=3.138;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:119,77:0.39:196
chr19	14030689	rs10410239	T	C	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:154,164:0.52:318
chr19	14037768	rs750580	C	T	11398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=1237;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-2.399;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:635,586:0.48:1221
chr19	14038102	rs10405523	G	A	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:110,132:0.55:242
chr19	14044287	rs2305778	G	A	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	14045311	rs369502229	AGT	A	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.316;QD=6.88;ReadPosRankSum=-2.509;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr19	14048587	rs55873182	G	C	6777.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:304,337:0.53:641
chr19	14070706	rs141180609	A	AGGTGGGCCCAGGGCGGGCAG	9646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.561;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.161;QD=17.41;ReadPosRankSum=1.210;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:336,218:0.39:554
chr19	14083695	rs201914058	C	T	2567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.770;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:144,131:0.48:275
chr19	14091543	rs146048336	T	TGCATCCTCTCTGGGGTGGGCTC	4438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.709;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=8.195;MLEAC=1;MLEAF=0.500;MQ=62.16;MQRankSum=12.628;QD=14.75;ReadPosRankSum=-0.153;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:193,108:0.36:301
chr19	14092889	rs117461664	G	A	5860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.366;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:300,303:0.50:603
chr19	14104688	rs143370000	CT	C	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.144;QD=3.40;ReadPosRankSum=-0.102;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:80,49:0.38:129
chr19	14139004	rs1982632	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	14141480	rs4263049	A	G	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:162,196:0.55:358
chr19	14142616	rs6511905	C	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr19	14143151	rs2306191	G	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr19	14156840	rs149367806	AAAAC	A	1066.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr19	14159772	rs141471266	CTTTA	C	4904.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:124,130:0.51:254
chr19	14159926	rs34723614	C	T	6309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.459;QD=9.69;ReadPosRankSum=1.584;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:335,316:0.49:651
chr19	14161547	rs10424865	A	G	3860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=3.840;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:165,193:0.54:358
chr19	14161745	rs10404803	T	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr19	14162347	rs10404921	C	G	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:55,62:0.53:117
chr19	14162676	rs2306190	A	C	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr19	14165278	rs56202530	G	A	11512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=1285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=0.714;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:656,597:0.48:1253
chr19	14165873	rs185854216	C	A	8411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=990;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=3.079;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:417,417:0.50:834
chr19	14166065	rs148192106	A	AGGACAAAAGGGAAGACAGGGTTAAGATG	9313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.500;MQ=62.41;MQRankSum=13.538;QD=20.56;ReadPosRankSum=0.636;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:245,208:0.46:453
chr19	14184713	rs35666756	C	CG	7752.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=934;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.836;QD=8.70;ReadPosRankSum=-2.318;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:484,407:0.46:891
chr19	14184715	.	G	GA	9744.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DP=944;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.518;QD=10.53;ReadPosRankSum=4.448;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:438,487:0.53:925
chr19	14185226	rs7258963	T	C	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	14185493	rs115655823	C	T	4529.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:132,213:0.62:345
chr19	14194458	rs35357458	C	A	15292.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:2,584:1.00:586
chr19	14237119	.	A	AT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.592;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr19	14294288	rs61051191	GC	G	10188.73	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:5,345:0.99:350
chr19	14492265	rs2302997	T	C	7170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-5.443;QD=16.91;ReadPosRankSum=1.696;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:237,187:0.44:424
chr19	14492272	rs2302996	T	C	7436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-5.430;QD=16.06;ReadPosRankSum=2.366;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:260,203:0.44:463
chr19	14499357	rs2302094	T	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.55;QD=29.05;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	14499410	rs2302092	G	C	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr19	14507102	rs200115962	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:80,22:0.22:102
chr19	14507307	rs62122581	C	T	5602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;ClippingRankSum=0.000;DB;DP=1458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-14.673;QD=3.87;ReadPosRankSum=-1.433;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:1062,384:0.27:1446
chr19	14507342	rs62122582	G	T	4702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.172;ClippingRankSum=0.000;DB;DP=984;ExcessHet=3.0103;FS=2.420;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-18.669;QD=4.79;ReadPosRankSum=-7.881;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:805,177:0.18:982
chr19	14507345	rs62122583	C	G	4656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.062;ClippingRankSum=0.000;DB;DP=945;ExcessHet=3.0103;FS=3.507;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-18.976;QD=4.94;ReadPosRankSum=-7.735;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:781,162:0.17:943
chr19	14508223	rs10412108	A	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	14508385	rs10410071	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=6.641;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-0.569;QD=7.64;ReadPosRankSum=1.591;SOR=2.280;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	14508964	rs7508244	T	C	12359.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:1,485:1.00:486
chr19	14512448	rs28548336	T	C	8812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=1227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-0.936;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:710,492:0.41:1202
chr19	14515510	rs73517819	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr19	14520079	rs73517823	G	A	5254.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:307,264:0.46:571
chr19	14522434	rs55968966	GCCTTA	G	26531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=1087;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.108;QD=25.51;ReadPosRankSum=0.275;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:2,1038:1.00:1040
chr19	14561722	rs8107892	A	G	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	14562977	rs12973696	T	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	14578354	rs34422078	C	G	2632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=3.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=0.143;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:181,139:0.43:320
chr19	14580869	rs34241778	GC	G	1646.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:88,70:0.44:158
chr19	14582539	rs8598	C	T	8358.77	.	AC=1;AF=0.500;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	0/1:464,429:0.48:893
chr19	14583264	rs2241363	G	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	14583582	rs11668633	C	T	3101.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:184,164:0.47:348
chr19	14590192	rs376808170	T	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr19	14590236	rs3815715	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr19	14627050	rs4926222	G	A	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	14629150	rs3962158	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr19	14655812	rs73002853	T	C	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:95,86:0.48:181
chr19	14655865	rs7252966	T	C	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:187,166:0.47:353
chr19	14674235	rs891089	C	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr19	14682804	rs9543	G	C	1780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=1.013;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:88,91:0.51:179
chr19	14693777	.	ATGTG	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.475;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:32,4:0.11:36
chr19	14698416	rs138728953	C	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.469;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.44;MQRankSum=-0.315;QD=9.91;ReadPosRankSum=0.597;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr19	14717791	rs10409868	A	G	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	14719854	rs10404194	T	C	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	14721019	rs6511944	C	T	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	14740720	rs140150874	TAGAG	T	205.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	14743902	rs2045912	C	T	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:80,51:0.39:131
chr19	14744181	rs899217	T	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr19	14752325	rs8102646	C	T	4144.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:335,212:0.39:547
chr19	14754831	rs61276204	GTT	G	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-1.372;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr19	14758168	rs34226397	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr19	14758222	.	CTT	C	131.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.349;QD=11.93;ReadPosRankSum=-2.744;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:3,8:0.73:11
chr19	14769207	rs4488589	G	T	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-0.118;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:49,42:0.46:91
chr19	14769339	rs4606855	C	G	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,79:0.49:162
chr19	14772984	rs8111916	G	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr19	14779550	rs4239642	C	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	14804064	rs10404773	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	14805719	rs3850141	T	C	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:83,57:0.41:140
chr19	14806017	rs3813144	G	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	14815753	rs34156991	C	A	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr19	14815804	rs35325242	C	G,T	3810.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=175;set=Intersection	GT:AF:DP	1/2:0.51,0.49:170
chr19	14817062	rs4808319	G	A	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:90,89:0.50:179
chr19	14817145	rs4809215	G	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr19	14817548	rs6511961	T	A	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=1.442;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:70,79:0.53:149
chr19	14819310	rs34925577	C	CAG	1375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.635;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.320;QD=12.86;ReadPosRankSum=2.043;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:68,39:0.36:107
chr19	14826849	rs4078586	T	C	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:110,110:0.50:220
chr19	14827076	.	C	CT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DP=340;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.659;QD=0.57;ReadPosRankSum=0.800;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:232,49:0.17:281
chr19	14846861	rs1064103	A	G	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:76,132:0.63:208
chr19	14846897	rs1859257	T	A	9486.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	14847013	rs1859258	G	C	4597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.670;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:274,246:0.47:520
chr19	14856949	rs2732788	C	A	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	14857202	rs67145758	T	C	1053.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.70;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	14857791	rs34186967	T	TA	2123.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=23.60;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	14862430	rs2524383	C	G	26978.77	.	AC=2;AF=1.00;AN=2;DB;DP=1045;set=Intersection	GT:AD:AF:DP	1/1:0,1034:1.00:1034
chr19	14862555	rs2524384	T	A	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	14863000	rs36101835	C	T	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr19	14866390	rs34617107	C	T	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr19	14866974	rs2253472	T	C	10970.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr19	14867186	rs2524386	G	A	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	14875201	rs7253782	G	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:68,85:0.56:153
chr19	14877043	rs2074892	C	T	7203.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:329,364:0.53:693
chr19	14877630	rs6511971	T	A	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-1.430;QD=10.78;ReadPosRankSum=-0.152;SOR=0.286;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr19	14877799	rs12976472	G	C	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.703;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=2.714;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-18.000;QD=2.35;ReadPosRankSum=-9.161;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:626,99:0.14:725
chr19	14877806	rs12976475	G	A	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=4.613;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-20.016;QD=1.84;ReadPosRankSum=-9.072;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:612,72:0.11:684
chr19	14884946	rs2302090	A	G	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:37,8:0.18:45
chr19	14884965	rs28492070	A	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr19	14910210	rs73004304	C	G	3875.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:187,191:0.51:378
chr19	14910321	rs16979912	A	G	5078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=1.615;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:233,250:0.52:483
chr19	14910438	rs10415312	C	T	15913.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr19	14910573	rs10415562	C	T	11497.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr19	14910654	rs17230134	T	C	3565.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:157,173:0.52:330
chr19	14952706	rs141373725	CAG	C	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.154;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:123,27:0.18:150
chr19	15052983	rs3044711	T	TATC	20226.73	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr19	15060983	rs5827264	TG	T	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.885;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.329;QD=6.30;ReadPosRankSum=0.387;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr19	15064065	rs10417793	A	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=-0.504;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	15064858	rs2269913	A	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr19	15065169	rs757465	T	C	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.77;ReadPosRankSum=0.137;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:43,36:0.46:79
chr19	15065169	.	TGG	CGT	504	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=4;HapScore=2;MGOF=25;MMLQ=23;MQ=59.67;NF=6;NR=10;PP=504;QD=34.8417421789;SC=GGACTGAGGATGGGGCGTGGC;SbPval=0.52;Source=Platypus;TC=37;TCF=13;TCR=24;TR=16;WE=15065179;WS=15065159;set=Platypus	GT:AD:AF:DP	1/0:21,16:0.43:37
chr19	15065171	rs2269914	G	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=0.333;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:44,36:0.45:80
chr19	15072787	rs3827000	A	T	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:73,79:0.52:152
chr19	15075020	rs10407669	A	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr19	15078986	rs2097836	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.44;ReadPosRankSum=-0.949;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr19	15078987	rs2097837	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=-0.620;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr19	15079104	rs11668879	G	A	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:107,89:0.45:196
chr19	15083693	rs3746295	C	A	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr19	15124474	rs11085935	C	T	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.569;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:54,58:0.52:112
chr19	15124694	rs11085936	A	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr19	15131213	rs7248834	G	T	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	15131261	rs4405675	C	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,45:0.58:77
chr19	15131330	rs35352238	G	A	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:150,179:0.54:329
chr19	15132574	rs757463	C	G	11997.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr19	15133762	rs8111625	G	C	15754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=917;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=-0.363;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:457,444:0.49:901
chr19	15133787	rs10424547	C	A	15749.77	.	AC=1;AF=0.500;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	0/1:517,465:0.47:982
chr19	15133926	rs8112667	C	A	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:99,88:0.47:187
chr19	15162916	rs2239364	T	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr19	15165818	rs3181162	A	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr19	15166997	rs11574685	C	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr19	15198024	rs59166286	A	T	29414.77	.	AC=2;AF=1.00;AN=2;DB;DP=1139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,1099:1.00:1099
chr19	15198263	rs8105277	A	G	24687.77	.	AC=2;AF=1.00;AN=2;DB;DP=945;set=Intersection	GT:AD:AF:DP	1/1:2,932:1.00:934
chr19	15198292	rs8104843	C	G	30355.77	.	AC=2;AF=1.00;AN=2;DB;DP=1201;set=Intersection	GT:AD:AF:DP	1/1:0,1179:1.00:1179
chr19	15198441	rs73008811	G	T	28194.77	.	AC=2;AF=1.00;AN=2;DB;DP=1082;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,1062:1.00:1062
chr19	15198507	rs8108721	T	C	17430.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr19	15198606	rs73008812	C	T	11562.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr19	15198751	rs16980312	T	C	12018.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr19	15198764	rs12975625	T	C	11289.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr19	15198851	rs16980313	A	T	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr19	15219797	rs3214220	TC	T	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr19	15220295	rs56153523	C	T	9046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=1024;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=-0.084;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:552,463:0.46:1015
chr19	15220850	rs2240297	G	A	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:74,88:0.54:162
chr19	15222428	rs2040858	A	G	6613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.363;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:422,351:0.45:773
chr19	15223466	rs4808977	A	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	15224225	rs8109071	G	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr19	15224265	rs8109089	G	C	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:115,150:0.57:265
chr19	15226611	rs2074261	C	A	5310.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:210,248:0.54:458
chr19	15226970	rs2074262	G	A	8318.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:328,408:0.55:736
chr19	15227030	rs2074263	G	A	12591.77	.	AC=1;AF=0.500;AN=2;DB;DP=1152;set=Intersection	GT:AD:AF:DP	0/1:518,616:0.54:1134
chr19	15227638	rs875803	A	G	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:179,159:0.47:338
chr19	15227798	rs12972958	G	C	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:160,169:0.51:329
chr19	15229993	rs1131177	A	G	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:233,148:0.39:381
chr19	15230219	rs12463209	C	G	3970.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:197,199:0.50:396
chr19	15233581	rs2074265	C	A	12080.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr19	15233631	rs2074266	G	A	16059.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,608:1.00:608
chr19	15235932	rs4141356	G	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	15271771	rs1044009	G	A	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	15273221	rs757472	T	C	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	15273231	rs4809028	A	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.14;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	15273248	rs4809029	A	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	15273381	rs4809030	A	G	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	15276007	rs2886698	C	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	15276055	rs2074617	C	G	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	15276143	rs2074618	C	T	11479.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr19	15276919	rs2074619	G	A	15754.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr19	15276923	rs10416777	C	T	15482.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.78;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,331:1.00:331
chr19	15277006	rs45591935	T	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	15277009	rs62113791	CA	TG	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	15277938	rs1548554	C	T	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	15278057	rs1548555	A	G	10374.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr19	15281386	rs2074620	C	A	12146.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr19	15285052	rs1044006	T	C	6291.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	15285272	rs10422818	T	C	9376.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr19	15285382	rs71168591	ATTTT	A	1565.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.58;ReadPosRankSum=-0.601;SOR=2.368;set=HC	GT:AD:AF:DP	1/1:3,41:0.93:44
chr19	15289613	rs11670823	A	T	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	15290125	rs56061231	G	A	10025.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr19	15290412	rs2074621	G	A	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	15292088	rs7257550	G	C	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	15292366	rs11669982	C	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	15292437	rs1043997	T	C	7537.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	15294991	rs2074616	C	T	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	15295134	rs1043996	G	A	11861.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr19	15300069	rs10423702	T	C	30339.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=1218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=2.212;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:2,1198:1.00:1200
chr19	15302844	rs1043994	T	C	14926.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr19	15374492	rs192362102	G	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr19	15471856	rs4809184	T	C	4410.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:276,237:0.46:513
chr19	15485350	rs4809185	C	T	9096.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:353,429:0.55:782
chr19	15490485	rs57295859	C	T	8948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=881;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=0.789;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:406,447:0.52:853
chr19	15508130	rs7247749	G	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:73,57:0.44:130
chr19	15508362	rs2058322	G	C	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	15511205	.	CT	C	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=3.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.943;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:79,37:0.32:116
chr19	15539439	rs887898	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr19	15549255	rs1005953	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	15549939	rs929613	C	T	4958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.511;QD=8.97;ReadPosRankSum=1.276;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:295,258:0.47:553
chr19	15560462	.	C	A	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=0.670;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr19	15563386	rs370634744	TG	T	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.756;QD=11.14;ReadPosRankSum=-0.403;SOR=1.708;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr19	15574858	rs78677793	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr19	15575173	rs371577799	TG	T	691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.068;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:24,37:0.61:61
chr19	15579645	rs79229584	G	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.80;ReadPosRankSum=-0.418;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr19	15580084	rs11668144	G	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr19	15580290	rs36020076	G	A	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:194,180:0.48:374
chr19	15582863	rs34440547	C	T	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:88,117:0.57:205
chr19	15586672	rs892145	A	T	10817.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr19	15587185	rs733731	C	T	23246.77	.	AC=2;AF=1.00;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	1/1:1,888:1.00:889
chr19	15587345	rs3813135	T	C	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	15648148	rs4310987	C	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	15651539	rs201608860	GCC	G	5658.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	15651548	rs372183725	AAT	A	5645.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.25;SOR=2.535;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	15651551	rs372614865	T	G	5129.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	15651553	rs62113202	C	G	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.21;SOR=2.595;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	15651556	.	G	GAGC	4957.73	.	AC=2;AF=1.00;AN=2;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.48;SOR=2.750;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	15651560	rs62113205	C	G	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.96;SOR=2.168;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	15651562	rs139932061	CG	C	3832.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	15651564	rs60465772	A	T	3571.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=2.103;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	15651568	rs55832992	C	A	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.44;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	15658803	.	AGAGGGAGAGAGTGTGTGTGT	A	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.573;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=7.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.258;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:88,21:0.19:109
chr19	15726487	rs4646523	G	T	6685.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:169,311:0.65:480
chr19	15730498	rs55848814	G	GC	10961.73	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	15739084	rs4239613	T	C	2564.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:114,127:0.53:241
chr19	15739274	rs2056820	C	T	10198.77	.	AC=1;AF=0.500;AN=2;DB;DP=1116;set=Intersection	GT:AD:AF:DP	0/1:591,517:0.47:1108
chr19	15739315	rs2056821	T	C	10174.77	.	AC=1;AF=0.500;AN=2;DB;DP=1067;set=Intersection	GT:AD:AF:DP	0/1:544,522:0.49:1066
chr19	15739597	rs2056822	A	C	9282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;ClippingRankSum=0.000;DB;DP=1061;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-2.114;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:557,494:0.47:1051
chr19	15739992	rs2239366	T	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:79,63:0.44:142
chr19	15740220	rs4239614	C	T	4297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.921;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:318,226:0.42:544
chr19	15740268	rs2239367	C	G	3220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-0.282;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:110,92:0.46:202
chr19	15740275	rs2283605	G	A	2983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.05;ReadPosRankSum=-0.181;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:95,80:0.46:175
chr19	15757927	rs1290626	T	C	5553.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:221,263:0.54:484
chr19	15763577	rs2733750	A	C	4708.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:272,241:0.47:513
chr19	15763691	rs1805041	G	A	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:140,128:0.48:268
chr19	15763798	rs2683039	G	C	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:85,94:0.53:179
chr19	15763929	rs2683040	C	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.000;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	15769625	rs1915390	A	G	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:153,157:0.51:310
chr19	15769786	rs28371542	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr19	15769965	rs2176919	A	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr19	15769992	rs2460817	A	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	15770018	rs68106141	T	C	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=45.21;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	15770018	.	TCC	CCT	1437	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=5;HapScore=1;MGOF=20;MMLQ=27;MQ=59.13;NF=26;NR=9;PP=1437;QD=42.5847964246;SC=AGTTTCCACCTCCCTCCCCAA;SbPval=0.51;Source=Platypus;TC=40;TCF=30;TCR=10;TR=35;WE=15770028;WS=15770008;set=Platypus	GT:AD:AF:DP	1/1:5,35:0.88:40
chr19	15770020	rs2460819	C	T	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=43.96;SOR=1.394;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	15784061	rs7254013	C	A	9272.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:1,365:1.00:366
chr19	15784116	rs7253210	G	A	10656.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:1,426:1.00:427
chr19	15784152	rs17641206	T	C	8513.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr19	15784167	rs7254627	A	G	7514.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	15784195	rs10414690	G	C	8020.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.83;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	15784200	rs55794585	C	T	7887.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=1.267;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	15784214	rs56398124	C	T	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	15784285	rs56205003	C	T	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	15784319	rs56124328	G	T	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	15784386	rs16995378	C	T	10778.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr19	15784617	.	A	G	2072	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=1;MGOF=20;MMLQ=27;MQ=59.84;NF=30;NR=72;PP=2072;QD=20.6546197309;SC=TCAGTGAGCTAGGTATTGATG;SbPval=0.51;Source=Platypus;TC=102;TCF=30;TCR=72;TR=102;WE=15784625;WS=15784607;set=Platypus	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	15784660	.	A	G	1121	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=2;HapScore=1;MGOF=46;MMLQ=27;MQ=59.56;NF=9;NR=41;PP=1121;QD=23.1154242509;SC=GAGAAGCAAGAGAGATGGCTC;SbPval=0.52;Source=Platypus;TC=51;TCF=9;TCR=42;TR=50;WE=15784668;WS=15784650;set=Platypus	GT:AD:AF:DP	1/1:1,50:0.98:51
chr19	15788996	rs28523893	G	A	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	15789034	rs28416595	C	A	8907.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	15789098	rs609636	A	G	10588.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr19	15789140	rs609290	A	G	9456.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr19	15791132	rs2074568	T	A	26028.77	.	AC=2;AF=1.00;AN=2;DB;DP=1014;set=Intersection	GT:AD:AF:DP	1/1:0,999:1.00:999
chr19	15791180	rs8100667	C	T	12702.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr19	15793068	rs7254785	C	T	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	15793235	rs2285888	T	C	14005.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.912;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.30;MQRankSum=-0.560;QD=25.56;ReadPosRankSum=0.816;SOR=0.225;set=HC	GT:AD:AF:DP	1/1:1,547:1.00:548
chr19	15795842	rs2018030	C	T	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	15807884	rs593818	A	G	14059.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr19	15808025	rs11669240	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	15838746	rs11672695	A	G	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	15838753	rs34728106	AG	A	3720.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	15838967	rs2285955	G	A	16194.77	.	AC=1;AF=0.500;AN=2;DB;DP=1022;set=Intersection	GT:AD:AF:DP	0/1:258,740:0.74:998
chr19	15839168	rs2003905	C	T	9969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.134;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=63.126;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=-2.597;QD=27.77;ReadPosRankSum=0.749;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:105,254:0.71:359
chr19	15839174	rs2285956	C	T	10529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=87.096;MLEAC=1;MLEAF=0.500;MQ=51.73;MQRankSum=-1.308;QD=29.01;ReadPosRankSum=-0.264;SOR=0.032;set=HC	GT:AD:AF:DP	0/1:87,276:0.76:363
chr19	15839459	rs11669315	G	A	10156.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr19	15839921	rs11669723	C	T	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	15852223	rs1966357	A	C	7432.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	15853080	rs2240229	G	A	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	15881751	rs8112713	A	C	15077.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr19	15881909	rs4807985	A	G	14864.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr19	15881953	rs4807986	A	G	11606.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:1,440:1.00:441
chr19	15882884	rs3752144	C	T	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.28;QD=26.40;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	15882980	rs3752143	AT	GG	11305.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=46.72;QD=44.16;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	15890388	rs7259595	A	G	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	15904853	rs11085991	G	A	18394.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr19	15905002	rs4808379	T	C	24659.77	.	AC=2;AF=1.00;AN=2;DB;DP=996;set=Intersection	GT:AD:AF:DP	1/1:3,961:1.00:964
chr19	15905206	rs4808380	T	C	12032.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr19	15905431	rs4808381	T	C	14973.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr19	15905639	rs3746151	C	T	15654.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:1,605:1.00:606
chr19	15905941	rs56117700	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.38;QD=26.71;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	15918434	rs1859299	C	A	4013.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:357,223:0.38:580
chr19	15918647	rs4081570	G	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.42;QD=42.32;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	15918654	rs4808382	G	A	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.49;QD=37.94;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	15918802	rs4808383	C	G	8420.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	15932760	rs3761011	A	G	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	15932941	rs3761012	A	G	5301.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	15933155	rs367984219	A	AT	329.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=23.55;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	15934656	rs10411865	A	G	7478.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	15989405	rs1126433	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.67;QD=28.69;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	15990048	rs3093198	A	G	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	15996820	rs2074900	G	A	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	15997136	rs3093159	A	AC	9959.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.737;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=1.207;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=0.287;QD=23.94;ReadPosRankSum=-0.078;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:29,387:0.93:416
chr19	16024538	rs1060467	A	G	16472.77	.	AC=2;AF=1.00;AN=2;DB;DP=660;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,647:1.00:647
chr19	16024662	rs1064796	G	C	7943.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr19	16025176	rs1060463	C	T	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	16025312	rs12985248	T	G	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	16033379	rs4808409	G	T	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	16034714	rs8104361	A	G	19952.77	.	AC=2;AF=1.00;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	1/1:0,766:1.00:766
chr19	16035517	rs3746156	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	16038334	rs2219358	G	A	8282.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	16038390	rs2305803	G	T	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	16040292	rs3765070	A	G	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	16040473	rs4808414	T	C	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	16045141	rs2305801	T	C	20201.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,772:1.00:772
chr19	16060827	rs1594685	T	G	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	16130594	rs11669662	G	C	4858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=1.395;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:133,127:0.49:260
chr19	16130604	rs7250074	T	C	5051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=2.022;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:148,138:0.48:286
chr19	16131679	rs757545	T	C	6812.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:260,339:0.57:599
chr19	16136405	rs4808423	C	T	2918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.074;QD=9.15;ReadPosRankSum=3.006;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:170,149:0.47:319
chr19	16136528	rs140634016	G	GCAGCACCTGGC	2330.73	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:191,115:0.38:306
chr19	16136923	rs757546	T	C	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:263,192:0.42:455
chr19	16137025	rs757547	C	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:59,45:0.43:104
chr19	16137052	rs757548	A	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr19	16178587	rs4808031	A	C	6273.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	16186813	rs139298941	A	AC	550.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:73,37:0.34:110
chr19	16186815	rs10633690	C	CCA	899.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=1.503;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:67,48:0.42:115
chr19	16192898	rs3826722	A	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:100,112:0.53:212
chr19	16192958	rs3786577	A	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr19	16197421	rs2303149	A	G	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=0.308;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:100,90:0.47:190
chr19	16229236	rs1862603	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr19	16236557	rs10416989	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr19	16238279	rs1043308	C	T	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:273,249:0.48:522
chr19	16254422	rs4321304	T	C	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr19	16254694	rs2446366	A	G	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr19	16263202	rs285286	G	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	16265494	rs111524	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	16268207	rs5827321	TA	T	22718.73	.	AC=2;AF=1.00;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	1/1:0,924:1.00:924
chr19	16275515	rs6512086	A	G	7132.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr19	16275655	rs6512087	C	T	26874.77	.	AC=2;AF=1.00;AN=2;DB;DP=1055;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,1040:1.00:1040
chr19	16275772	rs4808461	A	G	6252.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	16280634	rs2003419	A	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	16283852	.	TAC	T	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=3.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=0.840;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr19	16301312	rs206231	A	G	6727.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	16301544	rs2242143	G	C	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	16320075	rs2290802	C	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	16321047	rs7258138	T	C	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	16321409	.	C	T	186.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr19	16337423	rs2305939	T	C	8704.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr19	16338532	rs2124904	G	A	7578.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr19	16339069	rs2305937	G	A	9923.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr19	16339715	rs3752797	C	T	26188.77	.	AC=2;AF=1.00;AN=2;DB;DP=1027;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,1016:1.00:1016
chr19	16344528	rs2279060	C	G	4671.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	16345099	rs897774	T	C	6400.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	16435717	rs8106384	T	C	17993.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,701:1.00:701
chr19	16435853	rs7248864	C	T	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.615;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-0.058;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:41,61:0.60:102
chr19	16436262	rs3745318	T	C	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=24.86;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	16436569	rs45586037	G	A	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=0.930;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:71,83:0.54:154
chr19	16514771	rs873636	A	G	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:75,86:0.53:161
chr19	16539347	rs71178694	G	GAAGA	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=0.344;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	16539354	rs374317214	GACAGA	G	1203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.852;QD=25.08;ReadPosRankSum=-0.819;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:19,29:0.60:48
chr19	16539366	rs368177133	AG	A	1381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.931;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.214;MLEAC=1;MLEAF=0.500;MQ=62.22;MQRankSum=3.050;QD=21.59;ReadPosRankSum=-1.199;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:22,42:0.66:64
chr19	16582785	rs7252649	G	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	16591464	rs9305079	G	A	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	16593189	rs138347151	CAACAA	C	2699.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	16593203	rs75847259	A	G	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=40.14;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	16593415	rs8100755	G	A	7851.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr19	16594967	rs10413787	A	G	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.56;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	16594979	rs7252242	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.99;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	16601154	rs3810196	T	C	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.254;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	16601194	rs3810198	C	T	9606.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	16606742	rs3810199	G	C	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	16606766	rs3810200	G	C	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	16611527	rs62118143	T	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr19	16611978	rs728116	T	C	3229.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:184,159:0.46:343
chr19	16612011	rs728117	T	C	4234.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:204,210:0.51:414
chr19	16612365	rs7251978	G	A	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.118;QD=9.25;ReadPosRankSum=0.315;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:48,40:0.45:88
chr19	16612368	rs11397471	A	AT	487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=6.718;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.852;QD=8.56;ReadPosRankSum=1.308;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:24,33:0.58:57
chr19	16613797	rs61130725	CA	C	723.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.912;QD=5.93;ReadPosRankSum=0.487;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:63,59:0.48:122
chr19	16617646	rs28716321	T	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=2.303;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr19	16625197	.	G	GA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=10.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.081;SOR=0.099;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr19	16625242	.	T	TG	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=0.517;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:142,21:0.13:163
chr19	16631322	rs2303119	T	C	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:121,134:0.53:255
chr19	16631776	rs8111801	G	C	5232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=1.213;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:271,267:0.50:538
chr19	16633950	rs1043481	T	C	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	16641501	rs45537744	G	C	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:300,294:0.49:594
chr19	16665857	rs731617	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr19	16666101	rs2287869	G	C	4479.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:250,228:0.48:478
chr19	16677289	rs1559201	C	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:78,60:0.43:138
chr19	16682261	rs62116871	G	A	5652.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:315,290:0.48:605
chr19	16771006	rs28364716	G	A	5345.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:197,262:0.57:459
chr19	16790859	rs730120	C	T	3587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.435;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:192,180:0.48:372
chr19	16791443	rs901792	T	C	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr19	16797240	rs2249827	A	G	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	16798927	rs2547112	T	C	34113.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=1336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=1.325;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:2,1318:1.00:1320
chr19	16841831	rs8108763	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	16842052	rs8107776	G	T	5161.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	16855265	rs812847	A	G	4534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=1.744;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:220,228:0.51:448
chr19	16856015	rs3848654	T	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:61,37:0.38:98
chr19	16860105	rs706764	G	A	20817.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,790:1.00:790
chr19	16876099	rs4808526	T	C	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:1,189:0.99:190
chr19	16899838	rs2608737	A	T	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	16905474	rs2431802	G	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	16923494	rs773894	C	G	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.325;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	16957638	rs2241377	A	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	16976117	rs10625481	A	AC	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.84;ReadPosRankSum=1.809;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	16976286	rs773911	A	G	4439.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	16988456	rs2303090	A	G	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	16988476	rs2258663	T	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	16999897	rs773905	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	17003789	rs773901	T	G	3646.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:169,186:0.52:355
chr19	17004049	rs1054533	T	C	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:107,95:0.47:202
chr19	17006697	rs2227366	C	A	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.303;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.21;ReadPosRankSum=1.354;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr19	17006700	rs2981473	G	T	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.42;ReadPosRankSum=0.830;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr19	17006738	rs146763898	A	ACACGCG	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=8.513;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.551;QD=11.99;ReadPosRankSum=1.283;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr19	17006787	rs2227367	G	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:56,37:0.40:93
chr19	17008578	rs2608732	G	C	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:77,84:0.52:161
chr19	17011860	rs60122837	G	T	1552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.900;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.619;QD=8.87;ReadPosRankSum=-0.550;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:86,89:0.51:175
chr19	17011950	rs77345177	A	AC	13927.73	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:2,546:1.00:548
chr19	17015428	rs773863	G	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:51,60:0.54:111
chr19	17032550	rs3745331	A	G	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.258;QD=14.88;ReadPosRankSum=0.756;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:47,31:0.40:78
chr19	17032559	rs3745332	T	C	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.444;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.322;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.284;QD=13.36;ReadPosRankSum=0.896;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:54,34:0.39:88
chr19	17056294	rs8100610	G	C	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:94,126:0.57:220
chr19	17062644	rs8108234	T	C	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr19	17068524	rs1457091	G	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr19	17068621	rs1457090	C	G	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:217,210:0.49:427
chr19	17100552	rs1973093	A	G	7865.77	.	AC=1;AF=0.500;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	0/1:405,412:0.50:817
chr19	17107825	rs3745337	G	A	3514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.683;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-0.951;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:208,177:0.46:385
chr19	17108135	rs3745340	C	T	3999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.518;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-0.466;QD=9.57;ReadPosRankSum=1.218;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:214,204:0.49:418
chr19	17111297	rs4808551	A	G	4579.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	17111411	rs4808064	A	G	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	17119560	rs897768	T	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr19	17133028	rs80035294	C	A	5145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.943;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:350,277:0.44:627
chr19	17137290	rs11878608	A	C	9025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=864;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-1.068;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:397,458:0.54:855
chr19	17166981	rs2278997	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	17169758	rs2305757	G	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	17170540	rs1551552	GG	AT	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	17170885	rs1130222	C	T	11173.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,434:1.00:434
chr19	17173487	rs3816550	A	G	9054.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:2,361:0.99:363
chr19	17179789	rs2305754	G	A	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	17186127	rs2305752	A	C	57878.77	.	AC=2;AF=1.00;AN=2;DB;DP=1312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,1280:1.00:1280
chr19	17186136	rs2305751	C	A	60667.77	.	AC=2;AF=1.00;AN=2;DB;DP=1455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,1419:1.00:1419
chr19	17256032	rs59360945	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	17264961	rs2305769	G	C	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.06;ReadPosRankSum=0.020;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:30,37:0.55:67
chr19	17264961	.	GCC	CCT	1097	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=26;MQ=60.0;NF=16;NR=13;PP=1097;QD=39.6713060297;SC=GTCAGAGGCAGCCTGCCCTGG;SbPval=0.61;Source=Platypus;TC=55;TCF=30;TCR=25;TR=29;WE=17264971;WS=17264951;set=Platypus	GT:AD:AF:DP	1/0:26,29:0.53:55
chr19	17264963	rs2305768	C	T	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.13;ReadPosRankSum=-0.791;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr19	17273753	rs12980061	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr19	17273893	rs7256689	G	T	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:145,91:0.39:236
chr19	17283303	rs2279008	T	C	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-0.447;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:52,50:0.49:102
chr19	17283383	rs11463235	A	AG	2321.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	17286438	rs8113494	A	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr19	17301880	rs4808072	T	C	5062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=1.323;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:230,257:0.53:487
chr19	17302056	rs962918	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr19	17306031	rs2279003	T	C	10359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481;ClippingRankSum=0.000;DB;DP=1124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.995;QD=9.39;ReadPosRankSum=-1.959;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:553,550:0.50:1103
chr19	17308871	rs376329870	CA	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.692;QD=0.59;ReadPosRankSum=1.981;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:92,24:0.21:116
chr19	17316697	rs12327728	C	G	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	17318018	rs17535005	G	A	9199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=923;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=0.001;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:444,468:0.51:912
chr19	17320272	rs117115747	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr19	17321462	rs55888795	C	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	17322415	rs8101691	C	T	2269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.058;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:111,113:0.50:224
chr19	17326124	rs113461568	G	A	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=0.791;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:51,38:0.43:89
chr19	17326567	rs388484	A	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	17329935	rs71180373	C	CA	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.632;QD=1.08;ReadPosRankSum=0.199;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:294,82:0.22:376
chr19	17330060	rs414528	T	C	19355.77	.	AC=2;AF=1.00;AN=2;DB;DP=767;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.77;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,751:1.00:751
chr19	17337025	rs2288544	C	T	7770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=911;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.161;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:490,408:0.45:898
chr19	17337223	rs2288542	G	A	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,53:0.56:95
chr19	17337555	rs3745163	C	A	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:200,173:0.46:373
chr19	17338033	rs891202	C	T	5377.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:220,264:0.55:484
chr19	17346920	.	CGGGG	C	54.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=0.674;QD=13.70;ReadPosRankSum=0.319;SOR=2.788;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr19	17361064	rs10415471	C	T	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:139,120:0.46:259
chr19	17362526	rs10469471	A	G	4371.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:180,206:0.53:386
chr19	17362941	rs7247493	A	C	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr19	17366110	rs35026554	CA	C	1463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.651;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.040;QD=5.97;ReadPosRankSum=0.932;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:127,118:0.48:245
chr19	17366278	rs4430871	T	C	11834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664;ClippingRankSum=0.000;DB;DP=1126;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.926;QD=10.59;ReadPosRankSum=1.643;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:517,601:0.54:1118
chr19	17367585	rs4464206	G	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr19	17379558	rs10424178	C	T	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.973;QD=8.93;ReadPosRankSum=-1.233;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:55,50:0.48:105
chr19	17382505	rs10420922	A	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:76,50:0.40:126
chr19	17384651	rs113272353	C	T	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:79,112:0.59:191
chr19	17387176	rs34084277	A	G	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:131,112:0.46:243
chr19	17387254	rs61634114	G	A	5385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.009;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-1.709;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:296,263:0.47:559
chr19	17389648	rs10406920	C	T	3657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-1.107;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:143,179:0.56:322
chr19	17389704	rs8170	G	A	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:161,145:0.47:306
chr19	17392483	rs7246262	C	G	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	17392894	rs8100241	G	A	2648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.979;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:136,137:0.50:273
chr19	17393015	rs1864116	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	17393449	rs73509996	T	G	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	17393504	rs1864113	G	C	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	17393530	rs8108174	T	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr19	17393925	rs56069439	C	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr19	17394124	rs2363956	T	G	4575.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:306,235:0.43:541
chr19	17394504	rs891017	A	C	51248.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0.000;DB;DP=1993;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.07;ReadPosRankSum=0.905;SOR=0.233;set=HC	GT:AD:AF:DP	1/1:1,1965:1.00:1966
chr19	17394839	rs66753001	A	G	11021.77	.	AC=1;AF=0.500;AN=2;DB;DP=1188;set=Intersection	GT:AD:AF:DP	0/1:594,575:0.49:1169
chr19	17395003	rs11086065	A	G	8850.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr19	17395055	rs11882562	C	G	4580.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	17395182	rs4808614	G	T	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.78;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	17395192	rs60208686	CT	C	422.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	17396549	rs751599	T	C	8352.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr19	17396761	rs891018	T	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	17397244	rs10425939	C	T	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr19	17397481	rs1465581	G	T	1127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.92;MQRankSum=-2.319;QD=7.72;ReadPosRankSum=-0.226;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:97,49:0.34:146
chr19	17397483	rs367668712	G	T	1419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.608;MLEAC=1;MLEAF=0.500;MQ=62.94;MQRankSum=2.753;QD=10.36;ReadPosRankSum=1.446;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:76,61:0.45:137
chr19	17397485	.	GTGTGTGTGTGTGTGTT	G	232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=26.589;MLEAC=1;MLEAF=0.500;MQ=62.94;MQRankSum=0.567;QD=1.62;ReadPosRankSum=0.859;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:121,23:0.16:144
chr19	17397487	.	GTGTGTGTGTGTGTT	G	1020.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.95;MQRankSum=2.002;QD=7.24;ReadPosRankSum=2.618;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:93,48:0.34:141
chr19	17397501	rs1465582	T	G	182.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=10.310;MLEAC=1;MLEAF=0.500;MQ=62.98;MQRankSum=-2.279;QD=1.19;ReadPosRankSum=0.781;SOR=1.838;set=HC	GT:AD:AF:DP	0/1:128,25:0.16:153
chr19	17397700	rs10401700	A	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	17416590	rs3217329	CT	C	3248.73	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:161,182:0.53:343
chr19	17424932	rs2288463	A	G	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:88,79:0.47:167
chr19	17424947	rs12327712	T	G	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:79,84:0.52:163
chr19	17434587	rs12977101	T	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=2.431;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr19	17435884	rs755123	T	C	6258.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:269,319:0.54:588
chr19	17438642	rs8102944	A	G	8547.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:361,409:0.53:770
chr19	17440542	rs8110408	C	G	5280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-2.513;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:181,251:0.58:432
chr19	17441488	rs1529482	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr19	17448961	rs1864112	A	C	20148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=2205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=0.778;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:1137,1052:0.48:2189
chr19	17450016	rs3810206	T	C	6108.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:273,304:0.53:577
chr19	17450446	rs4808623	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr19	17463214	rs62128111	C	T	9739.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr19	17471723	.	CT	C	906.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=4.159;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.418;SOR=0.282;set=HC	GT:AD:AF:DP	0/1:20,81:0.80:101
chr19	17502698	rs2278235	G	A	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	17514440	rs919265	G	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	17514646	rs113321277	T	TGGG	36885.73	.	AC=2;AF=1.00;AN=2;DB;DP=854;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.87;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,822:1.00:822
chr19	17516400	rs111617488	A	AGCTGAAAG	16380.73	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr19	17531450	rs2303680	G	A	4174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.705;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:217,210:0.49:427
chr19	17531990	rs10679842	C	CTT,CTTT	2618.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.705;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.98;ReadPosRankSum=2.504;SOR=0.446;set=HC	GT:AD:AF:DP	1/2:17,68,53:0.49,0.38:138
chr19	17533126	rs2303678	A	G	8548.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr19	17534693	rs2288408	T	C	8487.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	17535546	rs4808636	C	T	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	17535658	rs4808637	A	C	25248.77	.	AC=2;AF=1.00;AN=2;DB;DP=994;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,968:1.00:968
chr19	17544039	rs62125232	C	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr19	17544165	rs10415889	C	T	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	17544244	rs34189069	C	T	2276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=0.545;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:134,117:0.47:251
chr19	17544375	rs55761990	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	17547292	rs4808641	A	G	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr19	17556054	rs3810209	A	G	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	17559076	rs4808643	T	C	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	17571200	rs12984622	A	G	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	17571766	rs890839	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	17597830	rs12979251	G	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	17599688	.	G	A	2360.77	.	AC=1;AF=0.500;AN=2;DP=204;set=Intersection	GT:AD:AF:DP	0/1:83,109:0.57:192
chr19	17608516	rs11672333	T	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	17611261	rs3746318	G	A	5932.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:365,304:0.45:669
chr19	17611490	rs11879407	T	G	24264.77	.	AC=2;AF=1.00;AN=2;DB;DP=952;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:0,932:1.00:932
chr19	17612251	rs11668681	T	C	12232.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr19	17615609	rs10417922	T	C	5372.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:267,275:0.51:542
chr19	17615724	rs10418172	T	C	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.643;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=13.78;ReadPosRankSum=1.143;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:30,35:0.54:65
chr19	17622614	rs11086075	C	T	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:71,78:0.52:149
chr19	17628587	rs6743	A	G	25063.77	.	AC=2;AF=1.00;AN=2;DB;DP=988;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,972:1.00:972
chr19	17628737	rs8104468	T	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:74,46:0.38:120
chr19	17641391	rs59324033	G	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr19	17643065	rs12984143	T	C	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:122,148:0.55:270
chr19	17648350	rs8107859	T	C	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.970;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr19	17651370	rs11878663	A	G	3932.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:242,204:0.46:446
chr19	17664090	rs57969878	C	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr19	17666351	rs62119887	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr19	17670201	rs62119894	C	T	5654.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:339,297:0.47:636
chr19	17671084	rs117971255	C	G	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr19	17679597	rs3848645	A	G	6700.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	17692324	rs8100092	T	G	2500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-5.147;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:145,131:0.47:276
chr19	17722758	rs55962550	G	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr19	17728502	rs2287851	T	C	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,248:0.99:250
chr19	17728572	rs56174023	C	T	5640.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:280,287:0.51:567
chr19	17729148	rs2287849	C	T	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	17729672	rs56145097	T	TG	15940.73	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr19	17729787	rs56257446	T	G	7392.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr19	17734488	rs10419420	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	17737435	rs12610816	A	G	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr19	17737650	rs12609205	G	A	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:112,134:0.54:246
chr19	17738466	rs3810441	T	C	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:81,83:0.51:164
chr19	17738850	rs56388321	C	T	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	17741047	rs10413821	A	G	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:120,110:0.48:230
chr19	17744075	rs71162163	G	GC	5614.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	17746947	rs4239634	A	G	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr19	17758368	rs4808675	A	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:84,73:0.46:157
chr19	17759289	rs73922174	G	C	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:154,170:0.52:324
chr19	17760561	rs11665951	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	17763392	rs1159365	A	G	10740.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,417:1.00:417
chr19	17766900	rs34752754	C	T	6364.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:286,318:0.53:604
chr19	17769166	rs7258943	C	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	17777431	rs10424761	A	G	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-1.893;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:125,88:0.41:213
chr19	17777508	rs9305092	C	G	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=1.855;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:75,55:0.42:130
chr19	17777595	rs74180831	C	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr19	17778832	rs7248783	A	G	3566.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:127,173:0.58:300
chr19	17783019	rs4808677	G	A	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr19	17786792	rs7251241	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr19	17830278	rs77749111	G	A	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-0.811;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr19	17830507	.	GGGC	G	1320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=-0.807;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr19	17835831	rs3761055	T	G	11459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017;ClippingRankSum=0.000;DB;DP=1176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-1.960;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:585,586:0.50:1171
chr19	17837425	rs17710707	C	G	3818.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:221,188:0.46:409
chr19	17837981	rs7253548	A	G	7699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=956;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-0.208;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:530,391:0.42:921
chr19	17844325	rs2287860	T	C	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:118,105:0.47:223
chr19	17881171	rs12327667	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:92,77:0.46:169
chr19	17881552	rs3746197	C	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr19	17883631	.	T	A	1994.77	.	AC=1;AF=0.500;AN=2;DP=189;set=Intersection	GT:AD:AF:DP	0/1:94,90:0.49:184
chr19	17885270	rs2287859	A	G	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:82,81:0.50:163
chr19	17885308	rs2287858	G	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr19	17885325	rs2287857	A	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	17885336	rs2287856	C	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	17886940	rs2287854	G	A	3544.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:163,171:0.51:334
chr19	17887024	rs2287853	T	C	12435.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr19	17887563	rs13345379	G	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr19	17888787	rs4808690	G	A	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=-1.104;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr19	17888847	rs34991275	C	CA	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.426;QD=5.60;ReadPosRankSum=1.101;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:39,31:0.44:70
chr19	17889044	rs34062212	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr19	17892193	rs2287852	G	C	12555.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr19	17892478	rs2042299	A	G	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	17892591	rs2042298	A	G	13913.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr19	17892796	rs67498129	CTTTTTTTTTTTTTTTT	C	1145.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=12.788;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.471;QD=34.72;ReadPosRankSum=1.567;SOR=5.890;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr19	17894878	rs265558	C	T	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:119,73:0.38:192
chr19	17898717	rs265553	G	A	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-0.662;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:71,59:0.45:130
chr19	17922795	rs36686	G	A	9981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=1003;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=0.689;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:493,496:0.50:989
chr19	17937429	rs3008	A	G	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=-1.043;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:46,50:0.52:96
chr19	17937758	rs3212798	C	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr19	17940816	rs3212781	G	C	4776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-0.883;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:288,252:0.47:540
chr19	17940842	rs3212780	G	A	6780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DB;DP=756;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.016;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:394,354:0.47:748
chr19	17941294	rs2302603	T	C	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:84,112:0.57:196
chr19	17942005	rs3212774	A	G	3549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=1.401;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:129,166:0.56:295
chr19	17948732	rs3212752	T	C	14309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=1355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-0.047;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:617,720:0.54:1337
chr19	17955001	rs3212713	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.56;ReadPosRankSum=-2.283;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	17955001	.	CCC	TCT	274	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=3;HapScore=2;MGOF=8;MMLQ=26;MQ=60.0;NF=6;NR=1;PP=274;QD=46.7811249803;SC=CCCACACAGCCCCATCCTTCC;SbPval=0.86;Source=Platypus;TC=20;TCF=15;TCR=5;TR=7;WE=17955011;WS=17954991;set=Platypus	GT:AD:AF:DP	0/1:13,7:0.35:20
chr19	17955003	rs3212712	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.485;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.89;ReadPosRankSum=-2.395;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	17955021	rs3212711	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr19	17958777	rs7254346	T	C	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:127,134:0.51:261
chr19	17959012	rs13345965	C	T	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	17983059	rs118133504	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.170;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr19	18001686	rs4808708	G	A	1715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=0.857;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:48,84:0.64:132
chr19	18001839	rs4808709	A	G	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:129,153:0.54:282
chr19	18004393	rs35036312	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr19	18047283	rs4808722	T	G	5091.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:199,255:0.56:454
chr19	18047521	rs12151269	C	T	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr19	18053340	rs4808105	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	18053980	.	A	G	288.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr19	18054643	rs1052564	C	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr19	18092442	rs11666833	G	A	2281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.310;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:98,113:0.54:211
chr19	18104155	rs2290640	A	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr19	18108956	rs4808732	C	G	16524.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr19	18110890	rs4808110	C	T	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	18110994	rs4808733	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	18112150	.	C	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.14;ReadPosRankSum=0.097;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr19	18119399	rs28597966	G	A	6402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=-0.372;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:259,313:0.55:572
chr19	18119678	rs2305738	C	A	4375.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:235,213:0.48:448
chr19	18123617	rs7255640	A	G	1221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.175;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-1.603;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:57,65:0.53:122
chr19	18123738	rs7259041	T	C	1999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-1.784;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:115,106:0.48:221
chr19	18143862	rs11883085	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	18143954	rs35627700	C	G	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	18172043	rs67773732	G	GT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.33;ReadPosRankSum=1.063;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr19	18182266	rs2045386	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr19	18232778	rs273483	A	G	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	18233279	rs273486	C	G	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.28;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	18233283	rs55849352	C	CG	327.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	18234441	rs740691	C	T	9003.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	18235352	rs123202	T	G	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	18235424	rs123203	T	C	8174.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	18242675	rs273497	C	T	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=4.914;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	18245512	rs2270623	C	T	21105.77	.	AC=2;AF=1.00;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	1/1:2,809:1.00:811
chr19	18245807	rs12983325	C	T	13003.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.92;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr19	18245813	rs273499	T	C	12556.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	18248146	rs541225	T	C	27525.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=1151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.085;QD=24.40;ReadPosRankSum=-1.676;SOR=0.389;set=HC	GT:AD:AF:DP	1/1:3,1125:1.00:1128
chr19	18252829	rs613339	A	G	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	18255359	rs8108738	G	A	7888.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr19	18256418	rs11305984	TC	T	2375.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	18257750	rs2072490	C	T	11377.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr19	18257875	rs273279	C	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	18258459	rs1566030	A	G	2453.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.57;ReadPosRankSum=-0.915;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:1,88:0.99:89
chr19	18272190	rs2241088	A	C	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	18273013	rs28730848	G	A	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:67,67:0.50:134
chr19	18273047	rs1011320	T	C	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	18273410	rs2006885	A	G	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	18276856	rs4808755	T	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	18279638	rs273269	T	C	7323.77	.	AC=1;AF=0.500;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	0/1:419,382:0.48:801
chr19	18284651	rs2241089	G	T	5566.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:211,266:0.56:477
chr19	18285751	rs2241090	G	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:70,42:0.38:112
chr19	18286546	rs200373	T	A	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:69,63:0.48:132
chr19	18288069	rs7125	A	G	6188.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:376,328:0.47:704
chr19	18305578	rs16982263	G	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:41,67:0.62:108
chr19	18305824	rs2271881	C	T	14068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;ClippingRankSum=0.000;DB;DP=1554;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=0.914;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:811,721:0.47:1532
chr19	18307224	rs11552160	A	C	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:243,232:0.49:475
chr19	18309365	rs2271882	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr19	18344273	rs35421958	AC	A	10835.73	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:5,371:0.99:376
chr19	18358783	rs4808122	A	G	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	18359037	rs57884093	G	A	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	18368969	rs999814	G	A	5451.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:273,273:0.50:546
chr19	18375760	rs137899214	G	C	11039.77	.	AC=1;AF=0.500;AN=2;DB;DP=1105;set=Intersection	GT:AD:AF:DP	0/1:530,560:0.51:1090
chr19	18376518	rs61740751	T	A	4613.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:262,236:0.47:498
chr19	18391171	rs7249	C	T	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	18392873	rs7247222	C	A	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	18393032	rs41374745	C	CTCCT	1968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=61.25;MQRankSum=4.050;QD=18.75;ReadPosRankSum=1.061;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:49,56:0.53:105
chr19	18418525	rs368786619	G	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr19	18423402	rs2232968	T	C	8515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=879;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=2.367;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:422,441:0.51:863
chr19	18426950	rs2232965	T	C	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-0.462;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:55,44:0.44:99
chr19	18451381	rs7251555	A	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,42:0.58:73
chr19	18453629	rs66732430	G	A	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,60:0.49:123
chr19	18453813	rs113926271	C	CT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=2.120;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr19	18466840	rs34068189	C	T	4020.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:170,198:0.54:368
chr19	18497024	rs1059519	G	C	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:73,59:0.45:132
chr19	18497141	rs1059369	T	A	6686.77	.	AC=1;AF=0.500;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	0/1:394,334:0.46:728
chr19	18499238	rs1804826	G	T	5448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-1.268;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:374,291:0.44:665
chr19	18499780	rs1227733	A	G	3368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.353;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=6.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.82;ReadPosRankSum=1.045;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:89,90:0.50:179
chr19	18499784	rs1055150	C	G	3339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.49;ReadPosRankSum=-0.539;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:76,87:0.53:163
chr19	18502728	rs6512264	C	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	18502835	rs6512265	G	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:100,80:0.44:180
chr19	18503093	rs6512266	T	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr19	18530621	.	C	G	389.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr19	18541579	rs11395316	G	GA	7678.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	18544498	rs2544723	A	C	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=46.89;SOR=2.016;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	18544501	rs62122438	C	T	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=46.19;SOR=1.992;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	18544505	rs2544724	G	C	5010.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=42.83;SOR=1.650;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	18544677	rs78783575	G	GC	5856.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.095;QD=24.82;ReadPosRankSum=-0.296;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:2,234:0.99:236
chr19	18650278	rs7247733	T	C	4444.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:265,230:0.46:495
chr19	18679075	.	C	CA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.524;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr19	18703077	rs3170474	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr19	18704528	rs7256319	C	T	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:42,71:0.63:113
chr19	18707878	rs7247346	A	C	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:66,72:0.52:138
chr19	18709175	rs35521276	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:108,98:0.48:206
chr19	18709768	rs8108207	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr19	18710416	rs146027258	C	T	1138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=0.466;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:66,61:0.48:127
chr19	18717264	rs113093604	C	T	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.31;ReadPosRankSum=1.510;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	18726856	rs709679	T	C	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:192,189:0.50:381
chr19	18778445	rs10421503	C	G	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:187,182:0.49:369
chr19	18779113	rs17852385	C	T	5454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.48;ReadPosRankSum=1.625;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:209,266:0.56:475
chr19	18857939	rs373778758	AC	A	1130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.039;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=59.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.897;SOR=0.018;set=HC	GT:AD:AF:DP	0/1:125,62:0.33:187
chr19	18888150	rs78830644	C	T	21829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=2525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.533;QD=8.74;ReadPosRankSum=1.663;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:1350,1149:0.46:2499
chr19	18895218	rs12327738	G	A	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:186,139:0.43:325
chr19	18897526	rs5827423	A	AG	5189.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	18942888	rs4808161	C	G	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	18974200	rs2238658	A	G	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,206:0.99:208
chr19	18979324	rs11673194	A	C	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	18980213	rs4808864	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	18989859	rs2075762	G	A	21556.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.310;ClippingRankSum=0.000;DB;DP=898;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.55;ReadPosRankSum=0.119;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:5,873:0.99:878
chr19	18993503	rs62138063	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	19032637	rs2231997	T	C	8410.77	.	AC=1;AF=0.500;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	0/1:401,433:0.52:834
chr19	19035159	rs5827425	CT	C	3034.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:86,103:0.54:189
chr19	19035354	rs2301659	GC	TT	5473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.89;ReadPosRankSum=1.230;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:163,143:0.47:306
chr19	19037053	rs2301661	T	C	12965.77	.	AC=1;AF=0.500;AN=2;DB;DP=1187;set=Intersection	GT:AD:AF:DP	0/1:536,633:0.54:1169
chr19	19037294	rs2301662	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr19	19039908	rs62138076	G	A	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:117,106:0.48:223
chr19	19040312	rs1059240	G	C	7043.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	19049198	rs1064351	G	A	5798.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:287,295:0.51:582
chr19	19105131	rs4808896	G	A	5396.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:235,269:0.53:504
chr19	19105259	rs4808897	G	A	6436.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:260,314:0.55:574
chr19	19105773	rs3180770	G	A	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:183,151:0.45:334
chr19	19135319	rs6511010	A	G	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=1.297;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr19	19136541	rs4808907	C	T	7285.77	.	AC=1;AF=0.500;AN=2;DB;DP=993;set=Intersection	GT:AD:AF:DP	0/1:589,393:0.40:982
chr19	19145193	rs2269806	G	A	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	19150183	rs12979565	C	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:70,77:0.52:147
chr19	19151692	rs8104799	T	C	4818.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:266,251:0.49:517
chr19	19153801	rs3214143	G	GC	808.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	19153825	rs4808909	C	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr19	19165156	rs4808910	G	A	5411.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:315,277:0.47:592
chr19	19168183	rs7258637	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr19	19212658	rs56144126	G	A	7212.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:374,377:0.50:751
chr19	19215612	rs56247515	T	TA	1993.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	19230868	rs756791	A	G	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	19232666	rs72993474	C	T	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:87,84:0.49:171
chr19	19243843	rs10414676	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr19	19244033	rs72993497	C	T	8197.77	.	AC=1;AF=0.500;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	0/1:434,428:0.50:862
chr19	19245511	rs3826994	T	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	19256870	rs2238663	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr19	19258022	.	A	AACTGTTTGCCTGTTGAACTCTTATTCATCCTT	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.912;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=14.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-3.255;SOR=3.033;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr19	19267802	rs7256766	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	19267990	rs7257072	C	T	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:71,76:0.52:147
chr19	19304965	rs2283626	A	G	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.883;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:66,73:0.53:139
chr19	19330155	rs12459735	G	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr19	19330213	rs4808187	A	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr19	19335083	rs2238672	A	G	6533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.752;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:338,338:0.50:676
chr19	19335307	rs2238673	A	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr19	19348947	rs12981871	T	C	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	19351431	rs2229851	G	A	6599.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:401,350:0.47:751
chr19	19359854	.	T	TTGTG	208.77	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	19380563	rs201189528	A	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:86,84:0.49:170
chr19	19431423	rs3934667	T	G	2411.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.558;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.369;SOR=0.379;set=HC	GT:AD:AF:DP	1/1:15,139:0.90:154
chr19	19431963	rs12460764	G	T	15768.77	.	AC=2;AF=1.00;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr19	19446936	rs769267	G	A	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	19447933	rs34414052	G	GT,GTT	3264.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.33;MQRankSum=0.915;QD=15.33;ReadPosRankSum=-0.887;SOR=0.736;set=HC	GT:AD:AF:DP	1/2:29,142,42:0.67,0.20:213
chr19	19449603	rs2074089	G	A	9951.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr19	19449686	rs2074090	G	T	13832.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr19	19451591	rs2965190	A	G	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr19	19453521	rs2965191	T	G	8990.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:2,358:0.99:360
chr19	19453560	rs2301669	C	A	11393.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:1,434:1.00:435
chr19	19453742	rs2965192	A	G	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	19454828	rs2965193	G	A	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	19455854	rs141099504	C	T	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr19	19547086	rs2916077	T	C	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	19606443	.	T	TA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.039;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.246;QD=3.14;ReadPosRankSum=-0.936;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr19	19637930	rs7251447	A	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	19650372	rs61235376	C	CA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.212;SOR=0.187;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr19	19735257	rs1266503	G	T	16825.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:1,651:1.00:652
chr19	19737686	rs33982830	C	T	4113.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:258,216:0.46:474
chr19	19740729	rs880090	C	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,38:0.41:93
chr19	19746214	rs2304129	C	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr19	19749400	.	A	AT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.668;QD=1.21;ReadPosRankSum=1.457;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr19	19751456	rs2043293	C	A	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr19	19754149	rs4808975	G	C	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:101,94:0.48:195
chr19	19756662	rs10405234	T	C	4520.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:179,216:0.55:395
chr19	19758190	rs892035	T	C	6226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.561;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:266,304:0.53:570
chr19	19765568	rs2288867	C	T	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:116,99:0.46:215
chr19	19766775	rs3752152	G	A	10930.77	.	AC=1;AF=0.500;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	0/1:406,542:0.57:948
chr19	19779706	rs12976582	T	C	4768.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:184,242:0.57:426
chr19	19788845	rs16996227	T	C	3900.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:175,190:0.52:365
chr19	19790159	rs4808209	A	C	3566.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:105,172:0.62:277
chr19	19822049	rs7246866	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	19823270	rs12973901	T	A	4296.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:202,211:0.51:413
chr19	19843551	rs247774	A	G	5257.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:204,246:0.55:450
chr19	19910183	rs34277739	A	G	2622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.530;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:94,132:0.58:226
chr19	19916736	rs12973032	T	C	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:82,106:0.56:188
chr19	20116963	rs17679334	C	T	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:86,145:0.63:231
chr19	20133846	rs7255165	C	T	5666.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:166,272:0.62:438
chr19	20150075	rs2286920	A	G	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	20150125	rs2286921	T	C	14895.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr19	20150175	rs2286922	G	C	18676.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	1/1:0,712:1.00:712
chr19	20150247	rs2286923	A	C	11745.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr19	20150380	rs2335896	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	20230264	rs1654275	T	A	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr19	20232016	.	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.340;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:43,10:0.19:53
chr19	20232177	rs11321273	TA	T	849.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr19	20242092	rs1654287	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr19	20242379	rs71172568	C	CTTTTTTT	554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.80;ReadPosRankSum=-0.395;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr19	20307777	rs112723967	G	A	5503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-3.252;QD=11.28;ReadPosRankSum=-0.452;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:216,272:0.56:488
chr19	20308301	rs113493829	G	C	7531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.194;QD=12.05;ReadPosRankSum=-1.177;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:270,355:0.57:625
chr19	20308954	rs112134607	C	T	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr19	20727463	rs10411329	T	C	6632.77	.	AC=1;AF=0.500;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	0/1:383,337:0.47:720
chr19	20727903	rs112899579	T	C	8181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=0.690;QD=10.45;ReadPosRankSum=0.353;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:377,406:0.52:783
chr19	20727932	rs33926	G	A	24591.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=33.41;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,736:1.00:736
chr19	20728777	rs7254995	A	C	3287.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:132,159:0.55:291
chr19	20735138	rs58829785	GA	G	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=1.152;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:21,50:0.70:71
chr19	20735196	rs7250860	A	T	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:254,176:0.41:430
chr19	20735272	rs7251976	T	C	5860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=780;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=0.575;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:455,322:0.41:777
chr19	20736677	rs2562632	A	G	16877.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=26.62;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,634:1.00:634
chr19	20806770	rs34554673	T	TCA	763.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr19	20806824	rs10409289	T	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr19	20807053	rs112700497	T	G	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:141,124:0.47:265
chr19	20808149	rs1991528	A	G	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:167,119:0.42:286
chr19	20808515	rs1968385	T	A	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:91,78:0.46:169
chr19	20844340	rs3217340	G	GAAGT	37992.73	.	AC=2;AF=1.00;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	1/1:0,836:1.00:836
chr19	20973560	rs377604472	GAAA	G	3478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=4.286;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.072;QD=18.70;ReadPosRankSum=-0.214;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:88,98:0.53:186
chr19	20976742	rs1808542	A	G	4930.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:151,232:0.61:383
chr19	20988637	rs6511163	G	A	1780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.016;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=8.034;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-1.791;QD=8.86;ReadPosRankSum=-1.022;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:89,112:0.56:201
chr19	21203552	rs2081054	C	T	26532.77	.	AC=2;AF=1.00;AN=2;DB;DP=1014;set=Intersection	GT:AD:AF:DP	1/1:0,999:1.00:999
chr19	21203724	.	G	T	4898.77	.	AC=1;AF=0.500;AN=2;DP=656;set=Intersection	GT:AD:AF:DP	0/1:370,264:0.42:634
chr19	21205531	rs7252588	C	T	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	21216536	rs3760839	G	A	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	21217211	rs1470020	A	G	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	21281765	rs34494287	T	TA	759.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=12.073;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.133;QD=6.13;ReadPosRankSum=2.094;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:65,59:0.48:124
chr19	21299774	rs36125838	T	TATA	15515.73	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=44.84;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr19	21300462	rs2884554	A	G	14883.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.84;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,576:1.00:576
chr19	21349311	rs7256576	C	T	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	21477379	rs504280	C	T	8910.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:126,415:0.77:541
chr19	21477431	rs1781873	T	C	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-2.069;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:370,106:0.22:476
chr19	21491951	rs685844	T	A	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:70,179:0.72:249
chr19	21492062	rs547516	G	A	35346.77	.	AC=2;AF=1.00;AN=2;DB;DP=1382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.97;QD=25.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,1378:1.00:1378
chr19	21493246	.	C	CA	437	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=11;HapScore=3;MGOF=9;MMLQ=22;MQ=59.01;NF=14;NR=4;PP=437;QD=24.7777777778;SC=AACTCTGTCTCAAAAAAAAAA;SbPval=0.44;Source=Platypus;TC=43;TCF=35;TCR=8;TR=18;WE=21493266;WS=21493236;set=Platypus	GT:AD:AF:DP	1/1:25,18:0.42:43
chr19	21493258	rs669560	T	A	833.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.433;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.74;ReadPosRankSum=-0.864;SOR=1.699;set=HC	GT:AD:AF:DP	1/1:5,42:0.89:47
chr19	21493278	.	T	TA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.682;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:67,15:0.18:82
chr19	21541806	rs2012013	T	C	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-0.386;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:192,66:0.26:258
chr19	21544503	rs12981775	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.445;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:113,23:0.17:136
chr19	21544514	rs12981564	A	G	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.114;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:150,32:0.18:182
chr19	21544571	rs1142653	G	A	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.953;QD=1.60;ReadPosRankSum=-1.201;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:288,66:0.19:354
chr19	21544714	rs12982282	C	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.473;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=5.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=1.311;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:72,29:0.29:101
chr19	21558311	rs2914645	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	21558818	rs376940300	CA	C	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=3.263;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.834;QD=1.06;ReadPosRankSum=-2.851;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:246,71:0.22:317
chr19	21560141	rs1875256	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	21560314	rs112058265	G	GCACA	6588.73	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:96,186:0.66:282
chr19	21561408	.	C	CT	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.454;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr19	21561508	rs145776873	TCTC	T	1828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.685;QD=27.29;ReadPosRankSum=-0.549;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:20,47:0.70:67
chr19	21580012	rs62110379	T	G	15416.77	.	AC=1;AF=0.500;AN=2;DB;DP=942;set=Intersection	GT:AD:AF:DP	0/1:217,715:0.77:932
chr19	21587918	rs7254059	G	T	2745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.598;QD=3.83;ReadPosRankSum=-1.234;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:529,187:0.26:716
chr19	21588165	rs2650847	G	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-3.009;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:68,15:0.18:83
chr19	21588692	rs1055753	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=8.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.502;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:144,28:0.16:172
chr19	21606429	rs4621113	G	T	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.785;QD=2.48;ReadPosRankSum=0.020;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:189,50:0.21:239
chr19	21607525	rs201105659	A	G	759.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-14.185;QD=1.79;ReadPosRankSum=-4.624;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:378,47:0.11:425
chr19	21607526	rs202237831	A	G	759.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-14.530;QD=1.79;ReadPosRankSum=-4.737;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:379,45:0.11:424
chr19	21607537	.	A	AGCCTTTAGCCTGTCCCTCCAATTT	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-13.171;QD=0.85;ReadPosRankSum=-8.267;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:392,49:0.11:441
chr19	21607878	rs34723025	ATAAT	A	11262.73	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:73,277:0.79:350
chr19	21688495	rs73017722	C	T	12469.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:1,466:1.00:467
chr19	21688602	rs10420016	C	G	35691.77	.	AC=2;AF=1.00;AN=2;DB;DP=1392;set=Intersection	GT:AD:AF:DP	1/1:0,1380:1.00:1380
chr19	21719401	rs35782355	T	C	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	21736788	rs2562502	T	C	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.61;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	21838002	rs7351091	G	T	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	21838113	rs34320073	A	AGAT	3234.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	21838146	rs7351088	C	T	1897.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	21838146	.	CA	TG	1070	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=1;MGOF=45;MMLQ=27;MQ=60.2;NF=7;NR=18;PP=1070;QD=44.9387149945;SC=TGATAACTACCAAGAGCAATA;SbPval=0.52;Source=Platypus;TC=26;TCF=7;TCR=19;TR=25;WE=21838155;WS=21838136;set=Platypus	GT:AD:AF:DP	1/1:1,25:0.96:26
chr19	21838147	rs7351087	A	G	1897.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.29;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	21838240	rs6511279	C	A	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	21838351	rs7508059	A	G	6537.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	21838444	rs76368926	C	T	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:64,166:0.72:230
chr19	21838492	rs6511280	C	G	8605.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr19	21838565	rs6511281	T	C	18975.77	.	AC=2;AF=1.00;AN=2;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=26.10;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,727:1.00:727
chr19	21838657	rs7508494	G	A	19881.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=785;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;MQRankSum=-0.089;QD=25.75;ReadPosRankSum=-1.400;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:2,770:1.00:772
chr19	21838785	rs10422946	C	T	12872.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr19	21838830	rs10422804	A	C	14775.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr19	21909948	rs7246400	G	A	13677.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr19	21948748	rs11085493	T	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	21950402	rs6511291	T	C	12545.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr19	22115982	rs807958	A	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.42;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	22115990	rs807957	G	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.74;QD=30.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	22116050	rs140860406	C	CA,CAA	432.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.22;MQRankSum=-0.960;QD=16.64;ReadPosRankSum=0.482;SOR=0.481;set=HC	GT:AD:AF:DP	1/2:3,13,10:0.50,0.38:26
chr19	22153495	rs2359812	A	T	4013.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:45,188:0.81:233
chr19	22154954	rs2214301	C	T	4832.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:73,212:0.74:285
chr19	22157302	rs10419899	G	A	7855.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:125,357:0.74:482
chr19	22171880	rs4574045	C	T	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=9.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=1.270;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr19	22193451	rs2040654	C	G	4426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.487;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=3.003;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=15.42;ReadPosRankSum=-0.004;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:86,201:0.70:287
chr19	22235307	rs415291	C	G	2492.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:80,119:0.60:199
chr19	22235491	rs387343	T	G	8923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.53;ReadPosRankSum=-0.360;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:193,421:0.69:614
chr19	22235526	rs387315	T	C	6557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=14.16;ReadPosRankSum=2.254;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:145,318:0.69:463
chr19	22235577	rs408312	C	T	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:47,121:0.72:168
chr19	22235620	rs423926	G	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr19	22256396	rs3752163	G	A	5136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=786;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.778;QD=6.60;ReadPosRankSum=2.019;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:486,292:0.38:778
chr19	22469233	rs808373	G	C	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:170,93:0.35:263
chr19	22486535	rs9304996	A	G	5956.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:158,280:0.64:438
chr19	22487437	rs16998944	T	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	22585517	rs35315232	A	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:143,30:0.17:173
chr19	22585521	rs35112061	CT	C	1137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=5.072;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-9.302;QD=5.60;ReadPosRankSum=2.343;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:135,68:0.33:203
chr19	22586073	rs56768795	C	A	204.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.919;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.000;QD=13.65;ReadPosRankSum=0.613;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	22586074	.	A	AC	217.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.000;QD=12.81;ReadPosRankSum=0.201;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	22586084	rs113181884	A	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.884;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=0.000;QD=7.91;ReadPosRankSum=1.113;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr19	22605103	rs11669353	G	C	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:252,138:0.35:390
chr19	22605120	rs11669356	G	T	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:221,114:0.34:335
chr19	22937168	.	C	CAA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=1.004;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	23159486	rs289318	T	C	5660.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:121,258:0.68:379
chr19	23169954	rs289302	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:13,65:0.83:78
chr19	23328940	rs7247102	G	A	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:197,136:0.41:333
chr19	23406165	rs2885604	T	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:139,59:0.30:198
chr19	23406801	rs8110795	G	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.492;QD=1.20;ReadPosRankSum=1.297;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:83,18:0.18:101
chr19	23413937	rs7256859	A	G	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.332;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.769;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:75,45:0.38:120
chr19	23414167	rs4932841	T	G	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:283,133:0.32:416
chr19	23433107	rs10405424	G	C	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:263,203:0.44:466
chr19	23542290	rs428549	AG	GC	5352.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	23543095	rs296093	T	C	3671.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:102,169:0.62:271
chr19	23543834	rs7255296	C	T	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=0.399;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=1.201;QD=5.09;ReadPosRankSum=-0.780;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:267,118:0.31:385
chr19	23545004	rs296092	G	A	10133.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr19	23545447	rs296091	A	G	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:86,117:0.58:203
chr19	23545530	.	G	GA	713.73	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr19	23557809	rs17554640	G	A	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr19	23557966	rs12976946	T	A	287.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.808;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-1.692;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr19	23674962	rs182723418	C	T	4514.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:137,219:0.62:356
chr19	23837145	rs11671053	A	G	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	23837365	rs4380159	A	C	7210.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr19	23845038	rs10418600	T	G	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	23845042	rs10418602	T	C	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	23869684	rs4020520	G	A	4821.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:1,182:0.99:183
chr19	23869823	rs2364624	T	G	17395.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr19	23869941	rs2364625	A	G	9953.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr19	23926332	rs10405811	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	23927252	rs1818990	C	T	17491.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=25.76;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,679:1.00:679
chr19	23927468	rs1818989	A	G	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	23927741	rs61397759	CCA	C	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:39,9:0.19:48
chr19	23928102	rs7248674	C	G	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	23941459	rs6417220	G	A	10492.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr19	24115369	rs56014490	T	C	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:107,144:0.57:251
chr19	29567134	rs1549944	T	C	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	29704002	rs11666764	T	C	11706.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;QD=44.51;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr19	29704010	rs8100724	A	C	12319.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=43.08;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	30018052	rs4804888	G	T	3236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=1.160;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:147,159:0.52:306
chr19	30021083	rs143008092	G	A	5487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=0.021;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:193,265:0.58:458
chr19	30099457	rs1465585	A	G	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:83,68:0.45:151
chr19	30156601	rs7251666	G	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:204,143:0.41:347
chr19	30156797	rs7254984	G	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr19	30164574	rs1864222	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr19	30164618	rs1864223	C	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr19	30165639	rs3745169	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr19	30193721	rs10424582	G	A	12764.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr19	30303714	rs3218029	T	TC	2118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=1.599;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:86,88:0.51:174
chr19	30311511	.	TTTA	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.53;ReadPosRankSum=0.566;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr19	30311542	rs34022336	G	GT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.491;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	30314458	.	G	GA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=4.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.518;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr19	30433668	rs1990903	C	T	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	30496446	rs184447373	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr19	30500118	rs3840928	GTGA	G	19458.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.264;ClippingRankSum=0.000;DB;DP=1062;ExcessHet=3.0103;FS=2.158;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.499;QD=21.77;ReadPosRankSum=1.397;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:56,838:0.94:894
chr19	31840190	rs71173962	AG	A	2188.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	31840511	.	G	GC	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.215;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	31930388	rs8103449	A	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr19	32083696	rs7245697	T	C	15372.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr19	32873698	rs2270399	A	G	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	32930069	rs6510249	G	A	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:191,173:0.48:364
chr19	32954725	rs1544511	G	A	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:93,84:0.47:177
chr19	32955406	rs7252536	A	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.46;ReadPosRankSum=0.084;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	33072069	rs10402931	G	A	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	33072085	rs10405535	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	33072118	rs11084660	C	G	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr19	33072266	rs10411464	T	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	33076973	rs10500262	T	A	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr19	33089431	rs17692896	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	33098632	rs2302970	G	C	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	33098870	rs2903755	C	T	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.51;SOR=1.550;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	33098875	rs2868150	T	C	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=1.841;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	33106390	rs614370	T	G	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	33106621	rs405858	C	T	10656.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr19	33108662	.	T	TC	70	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=17;HapScore=2;MGOF=11;MMLQ=21;MQ=60.0;NF=1;NR=1;PP=70;QD=36.5;SC=TGATTTAGTTTTTTTTTTTTT;SbPval=0.56;Source=Platypus;TC=6;TCF=2;TCR=4;TR=2;WE=33108670;WS=33108652;set=Platypus	GT:AD:AF:DP	1/1:4,2:0.33:6
chr19	33110149	rs28615461	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	33110204	rs2287669	T	C	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:2,181:0.99:183
chr19	33117666	rs6510271	T	C	8854.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr19	33117842	rs6510272	C	A	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	33117884	rs6510273	T	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	33119883	rs6510274	A	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	33130496	rs11084666	T	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	33131112	rs3760943	G	A	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	33131336	rs10416829	T	C	16554.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=-1.669;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:2,658:1.00:660
chr19	33133936	rs3841621	CG	C	1540.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	33134425	rs259229	G	A	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	33134635	rs259228	A	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	33135458	rs259225	C	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	33137629	rs259220	T	A	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	33149768	rs259251	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	33150009	.	A	G	2519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-1.181;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:100,119:0.54:219
chr19	33150042	rs201943935	TTTC	T	152.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.431;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr19	33150043	rs199904012	TTC	T	114.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.031;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chr19	33167455	rs259290	G	T	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	33167879	rs259291	G	A	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	33182746	rs10413279	A	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	33182750	rs80137870	C	T	286.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	33182751	rs10413282	A	G	286.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	33183291	rs8108621	G	A	30569.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.432;ClippingRankSum=0.000;DB;DP=864;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.51;ReadPosRankSum=1.311;SOR=0.609;set=HC	GT:AD:AF:DP	1/1:1,814:1.00:815
chr19	33183316	rs8109823	A	G	23624.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr19	33211069	rs13346373	C	T	9207.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.999;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=54.602;MLEAC=2;MLEAF=1.000;MQ=59.98;MQRankSum=0.000;QD=17.31;ReadPosRankSum=4.931;SOR=5.193;set=HC	GT:AD:AF:DP	1/1:15,517:0.97:532
chr19	33239450	rs4805805	C	G	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	33240570	rs9783983	G	A	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	33264348	rs12608647	G	T	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	33281924	rs11881633	A	G	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	33282109	rs11878874	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	33292568	rs12976876	A	T	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	33294082	rs10404371	G	A	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	33304690	rs8107900	C	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	33304711	rs67051599	ATTTG	A	2372.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	33304717	rs61062732	T	C	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	33308824	rs34549089	AG	A	2812.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	33308875	.	C	CA	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=2.100;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:193,76:0.28:269
chr19	33316928	rs140235732	G	GTA	1037.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr19	33321447	rs2287884	A	G	195.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	33321717	rs10645053	A	AGG	4165.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	33332952	rs2287882	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	33333155	rs2287881	G	A	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	33349488	rs2287879	T	C	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	33351695	rs2287878	T	C	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	33353041	rs1007161	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	33353061	rs1007160	G	T	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	33353343	rs11084671	A	G	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	33353464	rs11084673	G	A	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr19	33355055	rs12150889	A	G	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	33355081	rs35170371	G	A	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	33355513	rs12150904	A	C	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr19	33390796	rs10418340	G	A	11452.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr19	33392087	rs7253415	C	T	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	33406311	rs61745862	T	A	4082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=0.205;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:247,216:0.47:463
chr19	33406442	rs7246178	A	G	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	33406484	rs7260149	G	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	33406549	rs7246326	A	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	33418037	.	C	CCCAT	840.06	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr19	33430816	rs12461782	T	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	33439158	rs12710001	T	C	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	33439187	rs3764633	G	A	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	33444453	rs75223967	T	G	17491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.681;QD=26.99;ReadPosRankSum=0.933;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:204,444:0.69:648
chr19	33444456	rs2944021	A	G	10233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-1.112;QD=14.17;ReadPosRankSum=-0.558;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:322,400:0.55:722
chr19	33444479	rs79480383	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=944;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=-0.404;QD=0.67;ReadPosRankSum=0.407;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:804,133:0.14:937
chr19	33444511	rs80283382	T	C	17844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.651;ClippingRankSum=0.000;DB;DP=1149;ExcessHet=3.0103;FS=9.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=2.160;SOR=1.351;set=HC	GT:AD:AF:DP	0/1:362,776:0.68:1138
chr19	33444556	rs73579706	T	C	12477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.032;ClippingRankSum=0.000;DB;DP=998;ExcessHet=3.0103;FS=28.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-3.546;SOR=2.107;set=HC	GT:AD:AF:DP	0/1:384,597:0.61:981
chr19	33444588	rs73035551	T	G	6865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.956;ClippingRankSum=0.000;DB;DP=736;ExcessHet=3.0103;FS=62.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-15.310;SOR=3.069;set=HC	GT:AD:AF:DP	0/1:349,364:0.51:713
chr19	33444773	.	C	CT	135.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-0.864;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr19	33462564	.	T	TA,TAA	2702.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.791;QD=12.07;ReadPosRankSum=0.482;SOR=0.682;set=HC	GT:AD:AF:DP	1/2:47,121,56:0.54,0.25:224
chr19	33467620	rs7247715	T	C	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	33481388	rs7250684	C	T	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:108,65:0.38:173
chr19	33482904	rs3764639	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:59,86:0.59:145
chr19	33484776	rs28370302	G	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,40:0.43:92
chr19	33486810	rs4805026	A	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	33486822	rs8110267	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr19	33486845	rs35671943	G	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr19	33487071	rs12610600	G	C	5586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-1.507;QD=9.10;ReadPosRankSum=-1.519;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:321,293:0.48:614
chr19	33487182	rs11084689	A	G	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:87,68:0.44:155
chr19	33487251	rs8110730	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr19	33490429	.	G	T	52.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:41,7:0.15:48
chr19	33490442	.	C	T	272.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:51,13:0.20:64
chr19	33490462	.	G	A	661.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:69,29:0.30:98
chr19	33490480	rs74603434	G	A	1716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-7.759;QD=11.60;ReadPosRankSum=-4.613;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:84,64:0.43:148
chr19	33490487	.	C	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.314;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=7.313;MLEAC=1;MLEAF=0.500;MQ=54.42;MQRankSum=-5.434;QD=0.28;ReadPosRankSum=-4.652;SOR=1.458;set=HC	GT:AD:AF:DP	0/1:148,24:0.14:172
chr19	33490488	rs12608926	G	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.22;MQRankSum=2.324;QD=2.64;ReadPosRankSum=2.537;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:145,38:0.21:183
chr19	33490566	rs201801079	T	C	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=52.73;MQRankSum=-2.494;QD=2.03;ReadPosRankSum=1.066;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:409,106:0.21:515
chr19	33490585	rs78615454	G	A	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.95;MQRankSum=-4.813;QD=2.99;ReadPosRankSum=0.026;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:415,132:0.24:547
chr19	33490667	rs200498530	G	A	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=54.70;MQRankSum=-10.669;QD=6.21;ReadPosRankSum=-6.708;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:99,57:0.37:156
chr19	33490685	rs8109247	T	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=0.000;QD=9.93;ReadPosRankSum=1.429;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:26,32:0.55:58
chr19	33493678	rs74446640	C	T	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=1.258;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:70,63:0.47:133
chr19	33498978	rs2163807	A	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:82,42:0.34:124
chr19	33499071	rs10410414	G	A	1950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.061;QD=7.56;ReadPosRankSum=0.664;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:151,107:0.41:258
chr19	33499156	rs71340517	C	CT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.495;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr19	33502714	rs2288854	A	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:95,89:0.48:184
chr19	33535102	.	A	T	275.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	33579018	rs35343047	CT	C	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-1.198;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:11,25:0.69:36
chr19	33579128	rs7259333	T	C	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=-0.300;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:82,78:0.49:160
chr19	33584176	rs35647730	C	CT	171.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	33584479	rs12460195	G	A	2993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-0.002;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:105,145:0.58:250
chr19	33584491	rs12460349	C	T	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-1.662;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:79,123:0.61:202
chr19	33585219	rs58636263	CT	C	665.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.924;QD=6.22;ReadPosRankSum=-1.981;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:43,64:0.60:107
chr19	33586739	rs13345542	G	C	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:165,199:0.55:364
chr19	33592301	rs10410778	C	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr19	33597816	rs10408093	T	C	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:106,167:0.61:273
chr19	33597930	rs3760893	C	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	33600764	rs2287679	T	C	3329.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:129,165:0.56:294
chr19	33602856	rs3786934	A	G	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,66:0.58:114
chr19	33602881	rs3786933	C	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr19	33604531	rs8103733	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	33605300	rs10416265	A	G	5266.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:171,259:0.60:430
chr19	33605312	rs10421769	T	C	4929.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:156,238:0.60:394
chr19	33610060	rs8113398	A	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr19	33617583	rs6510356	C	T	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:170,145:0.46:315
chr19	33620993	rs35506888	T	TCC	2611.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:64,66:0.51:130
chr19	33621030	rs117385869	T	C	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:109,81:0.43:190
chr19	33685836	rs60145560	T	C	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	33695830	rs11666900	G	A	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	33696708	rs2112800	T	C	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	33698291	rs3745974	T	C	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	33698655	rs376080905	C	CGG	1304.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.01;QD=43.49;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	33699664	rs57394649	T	TA	783.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.35;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	33700445	rs2303093	C	T	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	33702245	rs2241378	A	G	5692.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:203,278:0.58:481
chr19	33702259	rs61759827	A	G	3284.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:262,181:0.41:443
chr19	33703103	rs11669156	C	T	4977.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	33703706	rs11673535	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	33953743	rs6510386	A	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr19	34012861	rs40500	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	34288178	.	TGTGTGTGTGTGC	T	277.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=0.464;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	34288180	.	TGTGTGTGTGC	T	428.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=0.658;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	34288202	rs1139231	C	T	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	34304214	rs73039070	C	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,49:0.51:96
chr19	34304260	rs60235724	A	AT	2846.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	34824582	rs35956890	G	GT	728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=0.491;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:40,61:0.60:101
chr19	34868241	.	A	AAT	88.90	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.45;QD=17.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	34885006	rs8108038	A	G	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	34890322	rs2301263	G	A	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	34904539	rs9653103	C	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	34922865	rs3217243	T	TGTATAAA	2826.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=43.49;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	34942872	rs2161472	A	T	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=1.589;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr19	34945331	rs113959168	C	CT	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-2.132;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr19	34954873	rs10412944	C	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	34959812	rs7258977	A	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	34959979	rs7259160	A	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.90;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	34971763	rs7257588	T	C	4307.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	34971846	rs4344866	C	T	10362.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr19	34971998	rs7248705	G	A	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	34972146	rs7248847	G	C	9976.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr19	34972892	rs12609305	A	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.25;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	34973413	rs1465433	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	34973476	rs8107479	G	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	34981505	rs4321301	G	A	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	34985466	rs11671685	C	T	4832.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	34986767	rs35126035	A	C	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.77;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	34986776	rs35570240	G	A	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.319;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	35036089	rs7259820	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	35175208	rs2290652	A	G	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.232;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.332;QD=10.61;ReadPosRankSum=0.580;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:60,67:0.53:127
chr19	35175775	rs11543232	C	T	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:184,193:0.51:377
chr19	35231472	rs11426796	T	TA	199.27	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr19	35260281	rs2242129	G	A	4939.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	35270543	rs7259475	G	T	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	35420841	rs2546001	A	G	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:75,134:0.64:209
chr19	35434238	rs1811	A	G	3119.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:143,157:0.52:300
chr19	35434512	rs2651109	T	C	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:94,119:0.56:213
chr19	35435006	rs1345658	G	A	3720.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:170,186:0.52:356
chr19	35435069	rs765746	A	G	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:99,124:0.56:223
chr19	35435589	rs3761066	C	T	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:107,156:0.59:263
chr19	35435776	rs1053213	G	A	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr19	35448803	rs1063235	C	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr19	35449082	rs3746243	G	A	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:123,106:0.46:229
chr19	35450229	rs2651079	C	T	7091.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:242,342:0.59:584
chr19	35451330	rs2546024	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	35454604	rs2546028	AA	CG	5956.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;JOINED;set=Intersection	GT:AD:AF:DP	0/1:95,154:0.62:249
chr19	35491326	rs3072398	A	AGCCCT	2149.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.48;QD=42.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	35502352	rs140658050	CCT	C	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=1033;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=6.208;QD=0.26;ReadPosRankSum=2.162;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:838,122:0.13:960
chr19	35513896	rs4806072	C	T	8845.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:1,339:1.00:340
chr19	35532909	rs68093093	C	T	2942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.054;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:110,144:0.57:254
chr19	35533550	rs11399986	A	AC	4095.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	35541278	rs12463218	G	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	35541330	rs57035236	TA	T	1214.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	35556123	rs2305744	G	A	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	35556281	rs2305745	G	A	10568.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr19	35556300	rs2305746	A	G	9433.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr19	35556357	rs2305747	C	T	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	35556640	rs1688031	T	C	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	35556659	rs1672991	A	G	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	35556744	rs1688030	T	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	35557260	rs1042328	T	G	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	35578055	rs17718894	G	A	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:74,119:0.62:193
chr19	35590180	rs1687994	T	A	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	35597215	rs10422803	C	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr19	35597352	rs2445826	T	C	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,123:0.99:124
chr19	35597462	rs10424084	A	G	9990.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:253,479:0.65:732
chr19	35597620	rs10423723	C	T	4177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=-0.608;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:106,193:0.65:299
chr19	35597729	rs7258700	C	T	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:73,80:0.52:153
chr19	35602014	rs4806085	T	C	15214.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:2,602:1.00:604
chr19	35602213	rs12978764	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:70,44:0.39:114
chr19	35602338	rs11665663	T	C	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	35602445	rs199877070	TGGG	T	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	35609972	rs10543115	GGAC	G	7547.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	35609981	rs10426785	C	T	8069.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	35610245	rs2278994	A	G	6134.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	35612159	rs2290649	C	G	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:171,83:0.33:254
chr19	35614253	rs112343981	G	GGT	1626.73	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:165,69:0.29:234
chr19	35614336	rs1672974	T	C	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:238,118:0.33:356
chr19	35616087	rs3826989	G	A	1452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=2.262;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:165,87:0.35:252
chr19	35622695	rs1673007	A	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	35624890	rs11666576	C	T	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	35642651	rs36072726	G	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:90,57:0.39:147
chr19	35648264	rs12980648	G	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	35648365	rs1688005	T	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:141,73:0.34:214
chr19	35649324	rs1633915	C	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:3,167:0.98:170
chr19	35650593	rs4806093	G	A	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:110,98:0.47:208
chr19	35651531	rs1617607	A	G	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	35655151	rs1672994	T	C	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	35657351	rs8106303	A	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	35660450	rs2285515	T	C	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:61,120:0.66:181
chr19	35660508	rs12110	G	A	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	35660546	rs1046294	T	C	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr19	35719106	rs565791	A	G	9995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=832;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-0.178;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:306,488:0.61:794
chr19	35719257	rs11673347	G	A	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:64,81:0.56:145
chr19	35719577	rs34873156	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	35740069	rs10412357	C	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr19	35741456	rs2073900	T	C	15099.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr19	35757250	rs916147	G	A	10206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=-0.371;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:256,491:0.66:747
chr19	35757469	rs12459658	A	C	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-1.371;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:120,45:0.27:165
chr19	35758275	rs142507475	G	GGGA	9198.73	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:137,222:0.62:359
chr19	35770056	rs2280746	G	A	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:198,220:0.53:418
chr19	35770174	rs12742	A	G	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:78,68:0.47:146
chr19	35782958	rs2301599	C	T	105.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.65;ReadPosRankSum=-0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr19	35786868	rs2301600	C	T	9534.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr19	35793589	rs1126770	C	T	2496.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:250,140:0.36:390
chr19	35800720	rs10411883	G	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	35828635	rs73601142	C	T	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:61,79:0.56:140
chr19	35829381	rs7248108	A	G	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:72,102:0.59:174
chr19	35836751	rs4805119	A	G	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	35836859	rs4805120	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	35837428	rs12985354	G	A	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:56,93:0.62:149
chr19	35837694	rs73031792	C	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr19	35843086	rs2301151	G	A	10418.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr19	35849926	rs79251979	G	A	2389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-2.279;QD=3.62;ReadPosRankSum=0.132;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:494,166:0.25:660
chr19	35850022	rs149009291	A	G	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=3.061;MLEAC=1;MLEAF=0.500;MQ=52.77;MQRankSum=-0.841;QD=2.69;ReadPosRankSum=0.613;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:264,71:0.21:335
chr19	35850152	rs145076130	A	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.131;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.372;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	35850560	rs77988018	G	A	5892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=1165;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=51.75;MQRankSum=-3.923;QD=5.06;ReadPosRankSum=-0.064;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:799,366:0.31:1165
chr19	35850672	rs142125121	T	C	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.994;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=45.94;MQRankSum=0.578;QD=6.80;ReadPosRankSum=-0.204;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:86,41:0.32:127
chr19	35863141	rs201960715	T	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.28;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	35978299	rs7976	C	T	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:113,69:0.38:182
chr19	35978458	rs17638216	G	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:114,78:0.41:192
chr19	35978567	rs62111717	T	C	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=1.340;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:96,68:0.41:164
chr19	35978577	rs2293690	C	T	1999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=0.472;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:75,99:0.57:174
chr19	35979172	rs11084815	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr19	35979696	rs10410228	C	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.092;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:118,27:0.19:145
chr19	35991043	rs11666154	G	T	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	35991373	rs2293695	C	T	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	35991442	rs909072	T	G	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	35992691	rs8100640	A	G	24659.77	.	AC=2;AF=1.00;AN=2;DB;DP=973;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,966:1.00:966
chr19	35993661	rs11084816	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=2.770;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	35993919	rs8107732	A	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr19	35994126	rs8106676	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.573;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr19	35994376	rs149163465	GTT	G	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.74;QD=42.80;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	35994384	rs3829678	T	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=43.15;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	35994390	rs3829677	T	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=43.73;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	35997363	rs6510492	C	T	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:41,82:0.67:123
chr19	35997644	rs6510494	C	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr19	35998213	rs4358061	A	C	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:57,97:0.63:154
chr19	35998362	rs4254439	T	G	2298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-3.220;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:92,117:0.56:209
chr19	35999251	rs11084818	C	G	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:49,52:0.51:101
chr19	36002361	.	ACTGCTGCCACCACTGCTGCCGCCACTGCTGCCGCCACTGCTGCTGCCACTG	A	5645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.373;ClippingRankSum=0.000;DP=339;ExcessHet=3.0103;FS=13.077;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.781;QD=18.33;ReadPosRankSum=1.763;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:160,148:0.48:308
chr19	36002710	rs4806162	C	A	4447.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:92,211:0.70:303
chr19	36003430	rs7254784	C	T	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:143,187:0.57:330
chr19	36003721	rs7254211	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr19	36004106	rs4806163	A	G	23805.77	.	AC=2;AF=1.00;AN=2;DB;DP=907;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,896:1.00:896
chr19	36004171	rs12460932	C	A	10111.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:270,479:0.64:749
chr19	36015521	rs58183088	C	T	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:92,54:0.37:146
chr19	36015652	rs17705633	C	T	2768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.609;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:314,163:0.34:477
chr19	36015727	rs73030916	G	T	7674.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:184,361:0.66:545
chr19	36015865	rs2285511	A	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.77;SOR=3.360;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	36015865	.	ACGCGGAGG	CCGCGGAGA,CCGCGGAGG	631	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.54;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=24;MQ=60.0;NF=3,6;NR=27,52;PP=631,253;QD=22.8155958287;SC=AACCCCACAAACGCGGAGGGT;SbPval=0.6;Source=Platypus;TC=58;TCF=6;TCR=52;TR=30,58;WE=36015881;WS=36015855;set=Platypus	GT:AF:DP	0/1:0.52:58
chr19	36017469	rs62113963	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr19	36017928	rs10775583	G	C	33698.77	.	AC=2;AF=1.00;AN=2;DB;DP=1319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,1284:1.00:1284
chr19	36018272	rs12461911	C	T	8902.77	.	AC=1;AF=0.500;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	0/1:440,433:0.50:873
chr19	36018641	.	G	A	1531	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MMLQ=27;NF=32;NR=64;PP=1531;QD=16.3101167974;SC=CCTCATTTCCGGCCTGCCCTG;SbPval=0.9;Source=Platypus;TCR=156;TR=96;WE=36018649;WS=36018631;set=Platypus	GT:AD:AF:DP	1/0:181,96:0.35:277
chr19	36024296	rs74409639	G	A	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:78,124:0.61:202
chr19	36029240	rs61745734	G	T	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:233,134:0.37:367
chr19	36033460	rs2239945	C	T	5527.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:186,269:0.59:455
chr19	36033825	rs2293681	G	A	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:251,146:0.37:397
chr19	36038221	rs759996	T	C	3012.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:106,149:0.58:255
chr19	36038390	rs7599	A	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	36042207	rs2301617	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr19	36044524	rs2251124	G	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	36045772	rs2733739	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	36048741	rs2230181	G	T	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	36048791	rs748214	G	A	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	36050969	rs2733743	A	G	11124.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr19	36051872	rs3746283	C	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:76,54:0.42:130
chr19	36053448	rs10422358	G	A	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=4.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.457;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:75,64:0.46:139
chr19	36054605	rs73597298	T	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr19	36104890	rs45510191	C	T	7764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=1381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=0.907;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:909,461:0.34:1370
chr19	36105908	rs7249516	G	A	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:195,123:0.39:318
chr19	36105917	rs34572637	A	G	4334.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:140,216:0.61:356
chr19	36106337	rs3814983	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr19	36113459	rs2285413	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr19	36113658	rs2285414	A	G	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	36122441	rs2285415	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	36124176	rs8106576	A	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:73,32:0.30:105
chr19	36133982	rs3214104	TG	T	2149.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:45,76:0.63:121
chr19	36134208	rs2285419	G	A	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-1.433;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:243,134:0.36:377
chr19	36134665	rs145198089	C	T	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:148,97:0.40:245
chr19	36135279	rs3835005	C	CT	10248.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	36135783	rs117704954	G	A	4889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-0.092;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:213,139:0.39:352
chr19	36135793	rs6510501	A	T	4707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=-1.717;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:191,126:0.40:317
chr19	36142296	rs61220012	G	A	6504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=1072;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-0.123;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:685,376:0.35:1061
chr19	36145409	rs377609041	CA	C	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.437;QD=2.17;ReadPosRankSum=1.729;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:83,41:0.33:124
chr19	36159368	rs2267586	T	G	5565.77	.	AC=1;AF=0.500;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	0/1:558,322:0.37:880
chr19	36164108	rs75289222	G	T	4580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.603;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:409,249:0.38:658
chr19	36168646	rs73602806	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=1.248;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr19	36168872	rs2285420	G	A	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:169,100:0.37:269
chr19	36168914	rs2285421	T	C	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:281,162:0.37:443
chr19	36206050	rs2227278	A	C	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.767;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:230,91:0.28:321
chr19	36207336	rs2234375	G	C	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:138,95:0.41:233
chr19	36214632	rs11373774	A	AG	2310.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	36221051	rs2242520	G	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:159,90:0.36:249
chr19	36222774	.	C	A	7782.77	.	AC=1;AF=0.500;AN=2;DP=646;set=Intersection	GT:AD:AF:DP	0/1:265,377:0.59:642
chr19	36222857	rs16970649	C	T	4847.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:555,285:0.34:840
chr19	36223111	rs61351824	C	A	5667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=0.336;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:450,304:0.40:754
chr19	36223747	rs73590585	A	G	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:208,98:0.32:306
chr19	36224161	rs112013670	C	A	4424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-1.393;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:330,246:0.43:576
chr19	36224705	rs231591	A	G	1285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.575;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:270,94:0.26:364
chr19	36228667	rs73590598	C	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:139,88:0.39:227
chr19	36228954	rs2242522	G	T	4556.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:146,217:0.60:363
chr19	36230767	rs34562867	A	G	2571.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:264,148:0.36:412
chr19	36233136	rs4992668	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr19	36233139	rs3043405	G	GGA	251.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr19	36233200	rs3893069	C	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:80,46:0.37:126
chr19	36236120	rs231597	A	G	18913.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr19	36237227	rs3817622	T	A	2448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=0.289;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:98,67:0.41:165
chr19	36237245	rs2293688	C	G	2848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=-1.186;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:117,86:0.42:203
chr19	36243089	rs170758	T	C	9302.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	36243190	rs231244	T	C	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-1.195;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:145,90:0.38:235
chr19	36243813	rs231243	G	A	14709.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:1,566:1.00:567
chr19	36253317	rs807479	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:66,40:0.38:106
chr19	36257932	rs35876904	CCT	C	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-0.424;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr19	36258721	rs73592448	C	T	4637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=-1.907;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:413,257:0.38:670
chr19	36258842	rs231217	G	C	3052.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:334,177:0.35:511
chr19	36258937	rs5827939	AG	A	12498.73	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr19	36268771	rs231228	C	T	3818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=0.351;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:428,227:0.35:655
chr19	36268923	rs807491	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.543;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:74,22:0.23:96
chr19	36269915	rs231230	T	C	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	36270052	rs231231	A	G	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:105,77:0.42:182
chr19	36273230	rs231223	C	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr19	36273308	rs35297478	G	A	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:262,171:0.39:433
chr19	36276403	rs120959	T	G	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:151,107:0.41:258
chr19	36278470	rs231235	C	G	2438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-0.718;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:264,144:0.35:408
chr19	36279862	rs59882609	AG	A	777.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	36302921	rs12462360	T	C	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.102;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:199,112:0.36:311
chr19	36317556	rs77309273	C	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:96,39:0.29:135
chr19	36321910	rs731934	G	A	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:173,92:0.35:265
chr19	36322270	rs2071327	C	T	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:272,202:0.43:474
chr19	36342212	rs3814995	C	T	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:261,177:0.40:438
chr19	36355595	rs382789	A	G	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	36380843	.	C	A	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.360;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:49,45:0.48:94
chr19	36435936	rs144984680	CT	C	230.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	36486445	rs7249826	G	C	6334.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	36496121	rs10469279	A	G	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.039;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,46:0.62:74
chr19	36497358	rs2285422	C	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	36501445	rs2073894	C	T	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:142,201:0.59:343
chr19	36508392	rs2073896	A	G	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr19	36517655	rs10418015	C	T	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	36526281	rs66987345	TATA	T	1812.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chr19	36530332	rs10420353	G	A	2497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=0.814;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:243,145:0.37:388
chr19	36530343	rs10421966	C	T	2641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=2.148;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:270,151:0.36:421
chr19	36536938	rs7258807	A	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.66;QD=25.78;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	36558113	rs12608517	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	36558712	rs10423651	C	T	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.334;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr19	36572279	rs142105577	G	GTCATTTTC	1554.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:57,41:0.42:98
chr19	36572564	rs7246292	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:90,41:0.31:131
chr19	36574063	rs45567532	C	T	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:105,174:0.62:279
chr19	36577579	rs4806263	C	T	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:99,114:0.54:213
chr19	36581263	rs3746271	G	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:142,74:0.34:216
chr19	36582270	rs2301736	G	A	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:174,88:0.34:262
chr19	36583651	rs61494900	G	A	6220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.472;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:189,295:0.61:484
chr19	36585174	rs62109756	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr19	36590329	rs2285745	T	C	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	36592752	rs2311004	G	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr19	36594063	rs17851502	C	T	5638.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:159,261:0.62:420
chr19	36594659	rs2074435	A	T	26931.77	.	AC=2;AF=1.00;AN=2;DB;DP=1014;set=Intersection	GT:AD:AF:DP	1/1:0,998:1.00:998
chr19	36595436	rs1008328	A	C	13191.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr19	36602729	rs1003470	G	C	1488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-1.110;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:127,83:0.40:210
chr19	36603703	rs2072605	T	A	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	36605647	rs2227260	T	C	11014.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr19	36605794	rs2231568	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	36606379	rs199646187	C	CCAG	950.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr19	36612396	rs2075474	A	G	8952.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.15;ReadPosRankSum=-1.042;SOR=0.249;set=HC	GT:AD:AF:DP	1/1:1,355:1.00:356
chr19	36636644	rs17882184	C	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr19	36640642	rs17879464	G	A	1934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.112;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-4.179;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:208,110:0.35:318
chr19	36640769	rs14100	T	C	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	36642310	rs2008683	T	C	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	36642561	.	G	GC	7350.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=3.790;MLEAC=2;MLEAF=1.000;MQ=59.93;MQRankSum=0.000;QD=25.70;ReadPosRankSum=1.183;SOR=1.286;set=HC	GT:AD:AF:DP	1/1:17,269:0.94:286
chr19	36642562	rs2285599	A	C	8259.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=3.121;MLEAC=2;MLEAF=1.000;MQ=59.93;MQRankSum=0.000;QD=27.53;ReadPosRankSum=1.050;SOR=1.344;set=HC	GT:AD:AF:DP	1/1:9,291:0.97:300
chr19	36642884	rs17879437	T	C	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr19	36674305	rs4805162	A	G	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr19	36685310	rs2287897	C	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=43.20;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	36685316	rs2287898	T	C	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=44.07;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	36686205	rs56206115	G	A	397.78	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr19	36728290	rs4806293	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr19	36858944	rs11084857	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr19	36885067	rs17206365	A	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.693;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:28,17:0.38:45
chr19	36896668	rs142442911	GTAAT	G	230.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	36900778	rs2271842	A	C	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:25,58:0.70:83
chr19	36981218	rs2967473	G	A	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:72,95:0.57:167
chr19	37038092	rs2278168	T	C	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:53,82:0.61:135
chr19	37039069	rs2912444	A	C	4284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=-1.233;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:116,208:0.64:324
chr19	37063218	rs11448179	C	CA	2559.73	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:98,163:0.62:261
chr19	37064240	rs2967442	A	G	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:70,114:0.62:184
chr19	37065732	rs2912406	A	C	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr19	37068081	rs2912410	G	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	37117302	rs3108171	A	G	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	37118439	rs61732180	C	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,78:0.48:162
chr19	37147330	rs12981751	T	G	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	37185813	rs36094586	CT	C	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=1.124;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:16,28:0.64:44
chr19	37203249	rs1830031	T	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	37210529	rs3108200	A	G	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:128,123:0.49:251
chr19	37210805	rs3108201	C	T	7939.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr19	37238537	.	C	CA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.891;QD=3.51;ReadPosRankSum=0.222;SOR=0.151;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	37241141	rs1673082	A	G	5107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=2.201;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:126,247:0.66:373
chr19	37241781	rs2462576	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	37644489	rs62110074	A	T	1759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.155;QD=13.13;ReadPosRankSum=0.123;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:54,80:0.60:134
chr19	37689998	rs12459637	C	T	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=0.653;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:116,68:0.37:184
chr19	37690375	rs73023557	C	T	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:42,84:0.67:126
chr19	37690420	rs1234250	C	T	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.70;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	37721404	rs56895666	T	TA	773.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.361;QD=6.67;ReadPosRankSum=1.892;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:58,58:0.50:116
chr19	37726433	rs320880	G	A	4426.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:103,205:0.67:308
chr19	37854580	rs3745764	C	T	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:279,104:0.27:383
chr19	37864925	rs61161652	A	AC	2004.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	37879852	rs376931538	C	CTGTG	4763.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:120,121:0.50:241
chr19	37879854	rs200420244	AT	A	4763.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:121,122:0.50:243
chr19	37918609	rs7254009	C	T	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	37958973	rs35295578	GT	G	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.416;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr19	37958983	.	T	TTG	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=3.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-1.868;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:31,23:0.43:54
chr19	37966661	rs1236810	A	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr19	38028865	rs149389958	G	C	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr19	38046946	rs112514764	C	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:75,39:0.34:114
chr19	38077661	rs8111055	G	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:125,68:0.35:193
chr19	38135403	rs2972458	T	C	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	38135444	rs71298747	C	CAAAAAG	10575.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.88;QD=43.52;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	38138887	rs2290999	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr19	38161070	rs73037036	A	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr19	38184262	rs17246792	C	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr19	38189440	rs958305	T	C	10660.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr19	38189616	rs2075284	T	C	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	38190845	rs5827990	GT	G	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	38202515	rs12461753	G	A	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-0.458;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:84,52:0.38:136
chr19	38202515	.	GA	AC	249	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=27;MQ=60.0;NF=12;NR=12;PP=249;QD=12.6028281193;SC=ACTTACATAGGACATGGTTTG;SbPval=0.56;Source=Platypus;TC=65;TCF=32;TCR=33;TR=24;WE=38202524;WS=38202505;set=Platypus	GT:AD:AF:DP	1/0:41,24:0.37:65
chr19	38202516	rs2909097	A	C	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	38229378	rs1291	G	A	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	38229824	rs3095726	T	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	38230720	rs3752365	C	G	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:75,111:0.60:186
chr19	38375666	rs73027451	C	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:159,94:0.37:253
chr19	38376485	rs10408510	T	A	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:196,140:0.42:336
chr19	38377409	rs7252765	A	T	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	38377564	rs7253969	T	C	4505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=0.200;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:464,260:0.36:724
chr19	38378539	rs10422056	G	C	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:316,144:0.31:460
chr19	38379446	rs6508750	C	T	4613.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:389,246:0.39:635
chr19	38382328	rs953370	C	T	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:219,99:0.31:318
chr19	38384421	rs3894129	C	G	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:144,68:0.32:212
chr19	38386959	.	G	T	1074.77	.	AC=1;AF=0.500;AN=2;DP=180;set=Intersection	GT:AD:AF:DP	0/1:105,62:0.37:167
chr19	38573139	rs62121430	G	T	2116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-0.010;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:230,123:0.35:353
chr19	38621473	rs861304	G	A	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	38633159	rs2304132	C	T	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,45:0.73:62
chr19	38652993	rs332864	C	T	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:111,68:0.38:179
chr19	38696708	rs74573108	G	A	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.53;ReadPosRankSum=-0.376;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr19	38696714	rs10419131	T	C	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.30;ReadPosRankSum=-0.814;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr19	38702950	rs11547760	G	A	2328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=3.192;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:292,143:0.33:435
chr19	38704192	rs28493214	A	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr19	38704561	rs4803871	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	38706989	rs2278431	G	A	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:214,124:0.37:338
chr19	38708398	rs2304175	A	C	1521.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:126,84:0.40:210
chr19	38709568	rs2255456	C	T	6337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DB;DP=952;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=-0.731;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:592,352:0.37:944
chr19	38778617	rs8104823	A	G	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:48,108:0.69:156
chr19	38794786	rs76682100	T	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr19	38794895	rs2304176	T	C	3597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=0.980;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:85,169:0.67:254
chr19	38795159	rs2304177	G	A	7017.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:135,316:0.70:451
chr19	38795250	rs45437199	G	A	11546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=776;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=1.101;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:228,537:0.70:765
chr19	38795546	rs139805446	TGAA	T	7095.73	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:90,178:0.66:268
chr19	38798086	rs3178327	T	C	13966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-0.122;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:246,647:0.72:893
chr19	38800165	rs3900981	C	T	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:71,122:0.63:193
chr19	38817110	rs7250755	A	G	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	38817486	rs3745951	T	C	11129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=783;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=-0.967;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:246,518:0.68:764
chr19	38817876	rs34989303	G	A	13283.77	.	AC=1;AF=0.500;AN=2;DB;DP=897;set=Intersection	GT:AD:AF:DP	0/1:261,626:0.71:887
chr19	38826656	rs59898212	G	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr19	38826947	rs56849284	T	C	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:63,151:0.71:214
chr19	38827960	rs2302182	T	C	6558.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:125,303:0.71:428
chr19	38843235	.	C	CTT	87.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=14.622;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-0.615;QD=5.16;ReadPosRankSum=1.699;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr19	38847431	rs2286475	T	C	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:80,122:0.60:202
chr19	38848796	rs4802351	A	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr19	38848861	rs8106895	C	G	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:36,120:0.77:156
chr19	38850246	rs60071299	G	A	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=1.222;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:30,74:0.71:104
chr19	38853297	rs2302183	G	A	5169.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:100,226:0.69:326
chr19	38861333	rs1052375	G	A	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:281,113:0.29:394
chr19	38872778	rs1131182	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:34,90:0.73:124
chr19	38875072	rs62123481	G	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:244,118:0.33:362
chr19	38877997	rs62123482	G	T	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:127,72:0.36:199
chr19	38882863	rs151129136	CCCT	C	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=1.087;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:133,15:0.10:148
chr19	38903399	rs117304824	G	A	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:202,93:0.32:295
chr19	38912597	rs4310986	G	A	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-1.936;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:103,43:0.29:146
chr19	38912764	rs892055	A	G	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=3.788;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:153,71:0.32:224
chr19	38935366	rs57132842	C	T	4237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=827;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=5.24;ReadPosRankSum=1.243;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:550,259:0.32:809
chr19	38939408	rs10406027	T	C	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	38939505	rs4476278	T	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	38942714	rs4802469	G	A	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	38943728	rs12460768	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:95,37:0.28:132
chr19	38945851	rs7254832	T	C	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	38946182	rs2288888	G	A	2821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.612;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:455,180:0.28:635
chr19	38946215	rs2288889	G	C	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=2.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=1.364;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:329,119:0.27:448
chr19	38948963	rs2071086	C	G	18843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.982;ClippingRankSum=0.000;DB;DP=1381;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-0.082;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:471,900:0.66:1371
chr19	38956803	rs2228069	G	A	10400.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:173,478:0.73:651
chr19	38959680	rs11083462	C	T	1635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.674;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:390,125:0.24:515
chr19	38965952	rs55845760	T	C	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.230;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:208,89:0.30:297
chr19	38976177	rs16972651	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=2.198;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr19	38976655	rs34934920	C	T	5120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=1341;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.323;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:963,359:0.27:1322
chr19	38979741	rs74778515	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:96,32:0.25:128
chr19	38980118	rs16972654	C	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr19	38981003	rs17708009	C	T	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=0.060;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:135,64:0.32:199
chr19	38981284	rs2228068	A	G	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.112;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:244,78:0.24:322
chr19	38983000	.	CA	C	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.114;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr19	38983180	rs35364374	G	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:195,80:0.29:275
chr19	38991516	rs2228072	G	A	3386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.396;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:680,242:0.26:922
chr19	38991543	rs2071088	G	A	3428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=963;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-1.041;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:715,245:0.26:960
chr19	38993372	rs1469695	A	G	2437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-2.503;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:409,163:0.28:572
chr19	38993547	rs2229142	C	T	2578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.809;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:596,197:0.25:793
chr19	38993638	rs1469699	A	G	3542.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:570,230:0.29:800
chr19	38994910	rs2229144	G	A	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.629;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:247,103:0.29:350
chr19	38995355	rs10532729	ACCT	A	797.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-0.715;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr19	38995438	rs2960340	T	C	1926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=1.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-3.877;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:426,142:0.25:568
chr19	38995510	rs2915951	T	C	3021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=3.225;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:483,199:0.29:682
chr19	38995975	rs2915952	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-1.091;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:101,19:0.16:120
chr19	38996066	rs2915953	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=2.005;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chr19	38996620	rs2960342	C	T	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=0.965;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:39,25:0.39:64
chr19	38996623	rs2960343	T	G	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=0.672;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr19	38996640	rs2915954	A	G	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=0.857;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr19	38996990	rs2229146	T	C	3204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=3.154;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:478,209:0.30:687
chr19	38997076	rs2960344	C	T	2873.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:423,184:0.30:607
chr19	38997214	rs2960345	T	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:123,49:0.28:172
chr19	38997323	rs2915957	T	C	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-1.353;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:91,29:0.24:120
chr19	38997364	rs35973146	T	TTCA	1604.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.045;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:152,50:0.25:202
chr19	38997459	rs2915958	G	C	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.105;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:224,72:0.24:296
chr19	38997609	rs2915959	T	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=0.180;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:81,30:0.27:111
chr19	38997635	rs2960346	A	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr19	38997679	rs2960347	G	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr19	38998497	rs5828009	G	GC	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-1.186;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:66,22:0.25:88
chr19	39002614	rs2960337	T	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:215,85:0.28:300
chr19	39002725	rs2071089	A	G	2256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=822;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-1.460;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:618,185:0.23:803
chr19	39005937	rs2915942	G	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	39010053	rs41274330	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.065;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:116,24:0.17:140
chr19	39018277	rs77592501	C	T	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.947;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:288,97:0.25:385
chr19	39019153	rs6508806	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:105,40:0.28:145
chr19	39019752	rs61441471	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=2.326;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr19	39028759	rs2071091	T	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.086;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	39051680	.	TA	T	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.801;QD=2.89;ReadPosRankSum=1.343;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:84,60:0.42:144
chr19	39100737	rs13345885	A	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:164,67:0.29:231
chr19	39101669	rs2287733	A	G	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:101,69:0.41:170
chr19	39101870	rs2287732	T	C	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=1.105;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:250,97:0.28:347
chr19	39106797	rs3217236	AG	A	101.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:50,9:0.15:59
chr19	39107092	.	CAG	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.18;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr19	39109975	rs2232997	C	T	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=1.207;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:344,119:0.26:463
chr19	39191383	rs2112649	G	C	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:164,95:0.37:259
chr19	39195558	rs2287728	C	T	3541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.417;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:521,226:0.30:747
chr19	39200843	rs12984794	C	T	3975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=0.851;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:429,234:0.35:663
chr19	39208795	rs7248577	C	T	4653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=1051;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-3.473;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:740,303:0.29:1043
chr19	39212052	rs34026184	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:42,11:0.21:53
chr19	39214411	rs62120068	C	T	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.080;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:248,99:0.29:347
chr19	39215172	rs12986337	T	C	3114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.107;QD=4.76;ReadPosRankSum=-0.031;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:451,203:0.31:654
chr19	39218694	rs12981131	A	G	1953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=2.598;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:354,133:0.27:487
chr19	39219050	.	G	GCTCCTC	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0.000;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.80;ReadPosRankSum=1.770;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:146,34:0.19:180
chr19	39219780	rs1136956	T	C	2822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=1.027;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:423,182:0.30:605
chr19	39224413	rs4801861	A	G	2429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.173;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:347,154:0.31:501
chr19	39224902	rs35807146	G	A	2317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DB;DP=773;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=-0.783;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:586,176:0.23:762
chr19	39224934	rs62120072	C	T	3414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=987;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-2.678;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:727,250:0.26:977
chr19	39225046	rs45599933	G	A	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.887;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:184,63:0.26:247
chr19	39226927	rs62120074	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-1.933;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	39227107	rs62120075	T	G	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.783;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-2.384;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:135,55:0.29:190
chr19	39228868	rs34488364	G	GCA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=1.282;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr19	39229089	rs12983010	A	G	2631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=2.038;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:419,178:0.30:597
chr19	39229316	rs12983550	A	G	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:227,110:0.33:337
chr19	39230748	rs34911882	C	G	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-1.374;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:230,70:0.23:300
chr19	39233146	rs936524	A	G	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=2.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.737;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:248,96:0.28:344
chr19	39233221	rs1106372	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:63,23:0.27:86
chr19	39279713	rs4802853	A	G	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.40;QD=22.52;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	39279801	rs36104272	C	T	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.58;QD=21.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	39281540	rs147201724	T	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=15.29;ReadPosRankSum=1.834;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	39297007	rs74176466	C	CA	1313.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.390;QD=17.06;ReadPosRankSum=2.052;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:7,70:0.91:77
chr19	39299280	rs8111357	A	G	921.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.63;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	39303434	rs73933062	C	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:92,39:0.30:131
chr19	39306425	rs2075588	A	C	17110.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr19	39307893	rs73933065	G	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:117,45:0.28:162
chr19	39307925	rs2287953	C	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:26,82:0.76:108
chr19	39308190	rs15570	C	T	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:334,149:0.31:483
chr19	39321899	rs73930206	G	A	4001.77	.	AC=1;AF=0.500;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	0/1:719,270:0.27:989
chr19	39322087	rs9419	T	G	8587.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:182,389:0.68:571
chr19	39328145	rs2278010	A	C	4810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=-1.361;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:115,228:0.66:343
chr19	39329517	rs8111670	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.900;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:105,32:0.23:137
chr19	39330645	rs77994052	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.054;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr19	39334811	rs2278011	T	A	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	39334830	rs2278012	C	T	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	39338125	rs862454	G	A	6680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=1.444;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:80,305:0.79:385
chr19	39338142	rs862455	A	G	8579.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr19	39360720	rs8110393	G	A	2386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.006;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=5.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-0.787;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:303,125:0.29:428
chr19	39364415	rs6508823	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr19	39364584	rs61747761	C	T	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=0.415;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:116,60:0.34:176
chr19	39366899	rs1529713	A	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:272,86:0.24:358
chr19	39372244	rs2082435	C	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:192,86:0.31:278
chr19	39435933	rs11672849	C	G	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	39522891	rs3848623	T	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	39589189	rs55878600	C	T	4564.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:126,214:0.63:340
chr19	39589334	rs560364	G	A	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	39589548	rs57824661	G	A	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:59,94:0.61:153
chr19	39589869	rs11326424	CG	C	785.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr19	39590853	rs142348602	G	GC	4527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=2.437;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:124,170:0.58:294
chr19	39590955	rs8110736	G	A	13556.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr19	39591748	rs11673089	G	A	7648.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:217,353:0.62:570
chr19	39760069	rs30481	G	C	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	39883264	.	CTTT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=3.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.084;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:56,12:0.18:68
chr19	39905903	rs3859551	A	G	16768.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr19	39906985	rs10401595	T	C	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	39907036	rs2277743	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	39907781	rs10402009	G	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	39908574	rs35466645	C	T	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	39914308	rs31725	C	T	10685.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:2,413:1.00:415
chr19	39914748	rs31726	G	A	20270.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,771:1.00:771
chr19	39915637	rs31727	G	A	8696.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr19	39915758	rs31728	C	G	15987.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,620:1.00:620
chr19	39916110	rs16746	GGGA	G	697.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	39923952	rs17627	G	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	39924129	rs566130	T	C	16984.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.942;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.39;ReadPosRankSum=0.265;SOR=0.419;set=HC	GT:AD:AF:DP	1/1:1,668:1.00:669
chr19	39932066	rs1865091	T	C	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	39936502	rs1932	G	A	18426.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,712:1.00:712
chr19	39936693	rs2116932	C	T	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	39944082	rs1130180	C	T	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	39948871	.	CCCACCACCA	C,CCCA	15744.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=856;set=Intersection	GT:AF:DP	1/2:0.10,0.88:689
chr19	39949764	rs1529733	C	T	7573.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	39955304	rs73035432	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	39963828	rs45568533	T	A	19485.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr19	39971401	rs62120677	C	T	11954.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr19	39971622	rs2304221	C	G	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	39972766	rs62120691	G	A	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr19	39976464	rs4803245	C	G	13131.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr19	39976734	rs4803247	G	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	39976969	rs1865094	T	C	9770.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr19	39977173	rs8112528	G	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	39978610	rs74178079	GTGTA	G	5973.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	39990245	rs3212275	G	C	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	39991237	rs2304223	C	G	15055.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,600:1.00:600
chr19	39993415	rs2278440	C	T	5042.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=-0.978;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,202:1.00:203
chr19	39993560	rs8107127	T	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	39993591	rs8106337	C	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	39994711	rs1110627	T	C	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	39996027	rs2304214	C	T	21322.77	.	AC=2;AF=1.00;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	1/1:0,827:1.00:827
chr19	40023308	rs1123301	A	G	15299.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.16;ReadPosRankSum=-1.009;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:2,606:1.00:608
chr19	40030704	rs7252027	C	T	13133.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr19	40093111	rs3764843	C	A	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	40149297	rs1860134	T	A	7651.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	40196627	rs72480733	G	A	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:64,175:0.73:239
chr19	40318086	rs12977762	AG	GA	24604.77	.	AC=2;AF=1.00;AN=2;DB;DP=970;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,952:1.00:954
chr19	40328615	rs616650	C	T	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	40337080	rs11881344	C	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	40362573	rs10422312	A	G	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:35,106:0.75:141
chr19	40363020	rs741143	G	A	8175.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:124,370:0.75:494
chr19	40363926	rs3746013	C	G	9111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=2.080;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:170,409:0.71:579
chr19	40366245	rs146036971	G	A	1265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-0.963;QD=14.55;ReadPosRankSum=0.593;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:27,60:0.69:87
chr19	40366362	rs3855679	G	C	2176.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:44,101:0.70:145
chr19	40366603	rs3061825	G	GGC	2155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=7.240;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.857;QD=27.64;ReadPosRankSum=-1.208;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:20,58:0.74:78
chr19	40367862	rs6508920	T	C	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.39;MQRankSum=-1.660;QD=10.15;ReadPosRankSum=-0.997;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:69,70:0.50:139
chr19	40368268	rs141933551	G	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=20.414;MLEAC=1;MLEAF=0.500;MQ=48.06;MQRankSum=-5.078;QD=0.62;ReadPosRankSum=0.083;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:290,51:0.15:341
chr19	40368274	.	C	A	6986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DP=495;ExcessHet=3.0103;FS=85.167;MLEAC=1;MLEAF=0.500;MQ=48.87;MQRankSum=-12.683;QD=17.51;ReadPosRankSum=4.128;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:220,179:0.45:399
chr19	40368280	rs62106924	A	G	7675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=29.947;MLEAC=1;MLEAF=0.500;MQ=50.16;MQRankSum=-14.522;QD=14.73;ReadPosRankSum=3.901;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:291,230:0.44:521
chr19	40368330	rs74540349	C	T	4479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.255;ClippingRankSum=0.000;DB;DP=896;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.500;MQ=53.47;MQRankSum=-8.877;QD=5.50;ReadPosRankSum=6.733;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:536,279:0.34:815
chr19	40368395	rs28472548	C	T	9796.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:108,438:0.80:546
chr19	40368498	rs12610683	AA	CC	11672.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	40368520	rs36079378	G	C	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:49,140:0.74:189
chr19	40374034	rs138587194	A	G	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=47.04;MQRankSum=-5.475;QD=9.28;ReadPosRankSum=-1.734;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:85,74:0.47:159
chr19	40376261	.	A	G	197	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=45.39;NF=10;NR=1;PP=197;QD=21.0701102316;SC=GGGCTGATGAACAGTGGGAGG;SbPval=0.92;Source=Platypus;TC=28;TCF=22;TCR=6;TR=11;WE=40376269;WS=40376251;set=Platypus	GT:AD:AF:DP	0/1:17,11:0.39:28
chr19	40376562	rs144667922	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=51.09;MQRankSum=-5.082;QD=1.15;ReadPosRankSum=-4.560;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr19	40376675	rs77872255	G	A	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=48.52;MQRankSum=-3.914;QD=2.56;ReadPosRankSum=-0.365;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:279,83:0.23:362
chr19	40376880	rs75009537	T	C	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:76,111:0.59:187
chr19	40382178	rs76154158	A	G	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=0.643;QD=9.17;ReadPosRankSum=0.437;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr19	40384445	.	G	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=44.96;MQRankSum=1.180;QD=5.75;ReadPosRankSum=0.508;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	40384518	rs149161739	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr19	40384527	.	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=-0.431;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr19	40389581	rs143411450	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:102,26:0.20:128
chr19	40392359	rs56242719	T	C	3532.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.803;MLEAC=2;MLEAF=1.000;MQ=43.99;MQRankSum=1.865;QD=25.98;ReadPosRankSum=1.614;SOR=1.488;set=HC	GT:AD:AF:DP	1/1:1,135:0.99:136
chr19	40392482	rs62108883	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.372;MLEAC=1;MLEAF=0.500;MQ=54.42;MQRankSum=2.323;QD=0.61;ReadPosRankSum=-1.325;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:89,15:0.14:104
chr19	40392631	rs80068592	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.86;MQRankSum=1.467;QD=5.23;ReadPosRankSum=-0.092;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr19	40392719	rs200664901	G	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.500;MQ=42.57;MQRankSum=1.610;QD=3.20;ReadPosRankSum=-2.573;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr19	40400206	.	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.93;MQRankSum=-0.674;QD=9.34;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	40400277	rs200042517	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.89;MQRankSum=-0.431;QD=15.53;ReadPosRankSum=0.497;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	40400293	.	A	G	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.86;MQRankSum=-0.366;QD=16.54;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	40405847	rs2011817	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr19	40406019	rs2355719	G	A	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.658;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-0.620;QD=3.99;ReadPosRankSum=1.775;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:216,81:0.27:297
chr19	40408146	rs56186636	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=4.156;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=0.069;QD=3.32;ReadPosRankSum=0.693;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:137,43:0.24:180
chr19	40408821	rs11083543	C	G	2596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-7.183;QD=4.04;ReadPosRankSum=-0.653;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:459,183:0.29:642
chr19	40408857	rs4802064	T	C	2826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-7.998;QD=3.87;ReadPosRankSum=0.079;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:530,200:0.27:730
chr19	40408910	rs11083544	T	C	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.548;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:273,90:0.25:363
chr19	40486786	rs11377144	G	GT	283.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr19	40519795	rs140807219	A	G	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:59,148:0.71:207
chr19	40520519	.	AAAGCCTTTCGT	A	1223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.650;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=9.337;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.268;QD=4.18;ReadPosRankSum=-0.474;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:245,48:0.16:293
chr19	40521168	rs142397727	C	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,56:0.60:93
chr19	40595400	rs146357602	C	T	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:19,68:0.78:87
chr19	40711333	rs892117	A	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	40719076	rs1129156	T	C	22225.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.20;ReadPosRankSum=1.366;SOR=0.493;set=HC	GT:AD:AF:DP	1/1:3,879:1.00:882
chr19	40719410	rs3746006	C	T	11867.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr19	40720079	rs3746005	C	T	16286.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:3,618:1.00:621
chr19	40721877	rs8106744	G	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	40723844	rs79666308	C	T	10785.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,429:1.00:429
chr19	40739513	rs33933140	A	G	11479.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr19	40739721	rs2304186	G	T	10342.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr19	40742320	rs2304189	T	C	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr19	40770982	rs3730050	T	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	40788641	rs11880261	T	C	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	40839664	rs8103796	A	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	40875800	rs3745198	C	G	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	40875810	rs3745199	C	G	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	40883844	rs45469694	A	C	4101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.575;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:553,248:0.31:801
chr19	40884160	rs4635	G	A	24344.77	.	AC=2;AF=1.00;AN=2;DB;DP=940;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,922:1.00:922
chr19	40886223	rs56237517	G	A	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.652;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=1.243;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:467,164:0.26:631
chr19	40900865	rs268674	C	T	9721.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	40901011	rs3745202	G	C	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:575,226:0.28:801
chr19	40901496	rs268673	T	C	1502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.002;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:250,95:0.28:345
chr19	40901604	rs268672	A	G	2841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-1.566;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:159,82:0.34:241
chr19	40901614	rs268671	A	G	2890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-0.453;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:167,86:0.34:253
chr19	40904602	rs744389	G	A	2546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=0.233;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:362,167:0.32:529
chr19	40929363	rs268687	T	C	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.051;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:201,117:0.37:318
chr19	40929553	rs268686	G	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr19	40947373	rs10560834	GGATC	G	635.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.701;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.484;QD=3.09;ReadPosRankSum=-0.635;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:177,29:0.14:206
chr19	40947448	rs2887292	A	G	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.846;QD=2.70;ReadPosRankSum=0.072;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:349,103:0.23:452
chr19	40947751	rs35314597	G	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:149,49:0.25:198
chr19	40978453	rs34004825	G	A	4901.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:113,229:0.67:342
chr19	40978640	rs73931308	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:116,62:0.35:178
chr19	41008049	rs814526	A	G	5154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=-1.461;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:99,232:0.70:331
chr19	41010046	rs201197553	GC	G	203.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=28.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.787;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:82,19:0.19:101
chr19	41010047	rs843779	C	G	1677.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.832;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=28.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.61;ReadPosRankSum=-0.726;SOR=2.779;set=HC	GT:AD:AF:DP	0/1:19,82:0.81:101
chr19	41018832	rs814533	A	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	41021089	rs34104750	GAGA	G	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	41025222	rs76311470	G	T	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-1.433;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:96,20:0.17:116
chr19	41025243	rs814538	G	A	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	41056410	rs35964729	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.81;ReadPosRankSum=1.097;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	41062902	rs57040779	A	AC	728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.890;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:74,44:0.37:118
chr19	41071170	rs71972087	C	CA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.026;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr19	41081295	rs62107872	T	A	4544.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:88,213:0.71:301
chr19	41082868	rs16974365	T	C	2990.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:47,137:0.74:184
chr19	41082993	rs35684786	GC	G	1261.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr19	41083444	rs2290682	C	T	26865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=1783;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=0.920;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:493,1258:0.72:1751
chr19	41083854	rs67613859	TAC	T,TACAC	101.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=38;set=Intersection	GT:AF:DP	0/1:0.27:33
chr19	41084471	rs3217684	A	AG	2070.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:29,74:0.72:103
chr19	41089195	rs62107875	T	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:17,59:0.78:76
chr19	41095086	.	TGAGGACAGTCCTGTCCAACAGGGAGG	T	4214.73	.	AC=1;AF=0.500;AN=2;DP=492;set=Intersection	GT:AD:AF:DP	0/1:90,195:0.68:285
chr19	41096189	rs396118	A	G	8457.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:208,410:0.66:618
chr19	41104977	rs55815263	C	T	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:34,115:0.77:149
chr19	41111069	rs2303729	G	A	14647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=2.937;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:287,681:0.70:968
chr19	41114065	rs2303728	G	T	5338.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:119,248:0.68:367
chr19	41116397	rs1318544	G	A	6920.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:135,323:0.71:458
chr19	41117624	rs2278246	T	C	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr19	41117869	rs1131620	A	G	6698.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:164,305:0.65:469
chr19	41118056	rs1051303	A	G	6602.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:143,311:0.69:454
chr19	41119273	rs12611045	G	C	14257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=943;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=0.172;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:260,645:0.71:905
chr19	41120083	rs2369006	A	T	5963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=1.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=1.084;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:105,276:0.72:381
chr19	41122671	rs10403963	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr19	41123093	rs59030801	A	AG	13989.73	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	41125159	rs7259237	A	G	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:55,111:0.67:166
chr19	41125177	rs7259554	G	C	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:80,148:0.65:228
chr19	41128309	rs10880	C	T	4795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=-0.178;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:127,227:0.64:354
chr19	41129079	rs11376199	C	CT	1049.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=1.108;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:31,80:0.72:111
chr19	41129842	rs7367	C	T	7354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=-1.583;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:164,340:0.67:504
chr19	41131675	rs2278242	C	G	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-0.744;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:32,66:0.67:98
chr19	41132022	rs2278243	C	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	41133844	rs41512448	T	C	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr19	41135475	rs1051481	G	A	2747.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:39,121:0.76:160
chr19	41173880	rs2604901	C	T	13613.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:155,347:0.69:502
chr19	41173892	rs141662737	CTGCTGT	C	10238.73	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:188,261:0.58:449
chr19	41188890	rs3833218	TG	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=846;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=3.945;QD=0.11;ReadPosRankSum=1.136;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:635,79:0.11:714
chr19	41192610	rs112258640	T	TTGAG	771.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.656;QD=30.87;ReadPosRankSum=0.129;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr19	41192617	rs59449188	T	C	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.32;ReadPosRankSum=0.446;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr19	41196339	rs149100456	G	A	6073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=2.533;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:150,287:0.66:437
chr19	41208392	rs201750662	AAG	A	2621.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:54,116:0.68:170
chr19	41211056	rs3865452	T	C	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	41224204	rs28493229	G	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr19	41248009	rs3745213	C	T	3137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=0.569;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:36,144:0.80:180
chr19	41250707	rs111953830	G	A	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:35,90:0.72:125
chr19	41251180	rs2369302	T	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	41255500	rs2254343	C	G	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	41257176	rs1457141	G	C	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	41265201	rs736625	C	T	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	41269076	rs2305797	T	C	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.178;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:148,57:0.28:205
chr19	41283365	rs2233159	C	G	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	41286163	rs2287691	C	G	3814.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:74,175:0.70:249
chr19	41289756	rs2287692	G	A	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:78,165:0.68:243
chr19	41306362	rs11547373	G	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.805;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr19	41313202	rs3736329	C	A	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:565,253:0.31:818
chr19	41316355	rs41530251	T	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:130,45:0.26:175
chr19	41316370	rs11552615	T	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:80,25:0.24:105
chr19	41324832	rs2545773	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:70,22:0.24:92
chr19	41327313	rs2604863	C	A	123.90	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.35;QD=24.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	41332171	rs78011401	C	T	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:238,113:0.32:351
chr19	41349640	rs7248240	G	C	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	41350489	rs2002975	C	G	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.117;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=8.181;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-7.165;QD=4.95;ReadPosRankSum=-0.025;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:101,50:0.33:151
chr19	41350594	rs2002977	G	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:346,118:0.25:464
chr19	41350664	rs1809810	A	T	6921.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr19	41350996	rs8192729	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr19	41352762	rs4079369	G	C	2268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.418;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-4.981;QD=5.82;ReadPosRankSum=-0.656;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:257,133:0.34:390
chr19	41352840	rs1809811	G	A	2195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=760;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=2.018;QD=2.90;ReadPosRankSum=-2.150;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:582,176:0.23:758
chr19	41354442	rs57607700	C	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:81,26:0.24:107
chr19	41354496	rs8192726	C	A	5951.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:102,276:0.73:378
chr19	41354606	rs4986892	G	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-13.675;QD=0.31;ReadPosRankSum=6.660;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:430,62:0.13:492
chr19	41354661	rs79584535	T	C	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.279;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-10.090;QD=2.13;ReadPosRankSum=-3.020;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:167,40:0.19:207
chr19	41354688	rs148803816	AA	GG	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.389;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-7.942;QD=0.72;ReadPosRankSum=-4.784;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:120,16:0.12:136
chr19	41354712	rs8192725	A	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,82:0.98:84
chr19	41355849	rs2302990	A	G	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.732;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-14.763;QD=0.89;ReadPosRankSum=1.917;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:463,89:0.16:552
chr19	41356188	rs56283800	C	T	2845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=2.207;QD=3.81;ReadPosRankSum=-1.199;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:550,196:0.26:746
chr19	41356281	rs1137115	T	C	19845.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:0,750:1.00:750
chr19	41356379	rs28399433	A	C	4472.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:80,196:0.71:276
chr19	41381647	rs12460590	A	C	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	41382476	rs75152309	T	A	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:294,100:0.25:394
chr19	41382607	rs2316206	AG	CA	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=57.46;QD=43.80;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	41382612	rs2316208	CG	TA	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=57.22;QD=46.76;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	41382645	rs3865455	G	A	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.78;QD=41.65;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	41382653	rs2388869	A	G	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.11;QD=44.49;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	41382655	rs2316210	T	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.94;QD=45.20;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	41382665	rs3852869	G	A	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.60;QD=43.95;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	41383115	rs111390860	G	A	3908.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:101,184:0.65:285
chr19	41383215	rs2302986	G	C	5009.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:67,231:0.78:298
chr19	41383217	rs2302987	T	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:237,69:0.23:306
chr19	41383344	rs2302988	T	C	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	41383378	rs16958956	C	A	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	41383799	rs3869579	G	A	8084.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:213,390:0.65:603
chr19	41384533	rs113986398	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr19	41384578	rs4453619	G	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-0.604;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:70,29:0.29:99
chr19	41384637	rs4079367	C	T	4315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.292;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=0.656;QD=14.73;ReadPosRankSum=-1.071;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:92,201:0.69:293
chr19	41384675	rs4079366	T	C	10924.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.91;MQRankSum=-1.113;QD=25.89;ReadPosRankSum=-1.700;SOR=0.835;set=HC	GT:AD:AF:DP	1/1:2,420:1.00:422
chr19	41384702	rs117539170	T	C	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=3.844;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=-2.801;QD=0.46;ReadPosRankSum=1.735;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:409,69:0.14:478
chr19	41386136	rs4142867	A	C	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:54,90:0.62:144
chr19	41386420	rs56081734	A	C	12890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-4.906;QD=13.15;ReadPosRankSum=1.737;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:365,615:0.63:980
chr19	41386486	rs3815708	CA	AG	8084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.018;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=3.385;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-7.296;QD=21.67;ReadPosRankSum=-3.224;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:164,209:0.56:373
chr19	41386494	rs3815710	A	C	7192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.194;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=5.392;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-7.576;QD=23.66;ReadPosRankSum=-4.105;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:135,169:0.56:304
chr19	41386527	rs58798281	G	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:76,62:0.45:138
chr19	41386544	rs71337574	C	G	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-7.841;QD=16.28;ReadPosRankSum=3.235;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:57,46:0.45:103
chr19	41386547	rs74219554	G	C	1682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-7.273;QD=18.09;ReadPosRankSum=4.406;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:51,42:0.45:93
chr19	41387620	rs10425150	A	G	1991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=-9.037;QD=8.74;ReadPosRankSum=-4.189;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:124,104:0.46:228
chr19	41387647	rs10425169	A	G	4511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-8.270;QD=18.12;ReadPosRankSum=0.238;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:129,120:0.48:249
chr19	41387656	rs10425176	A	T	4465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-8.890;QD=18.84;ReadPosRankSum=2.259;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:121,116:0.49:237
chr19	41387669	rs10425185	A	G	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	41397370	rs3852870	A	C	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:34,116:0.77:150
chr19	41397806	rs8106551	C	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	41397988	rs12609161	A	G	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-10.243;QD=0.98;ReadPosRankSum=0.364;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:384,74:0.16:458
chr19	41400906	rs10626476	C	CAGAG	3901.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;MQ=59.83;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	41400913	rs140473451	AAAAC	A	2002.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;MQ=59.81;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr19	41401950	rs4803398	G	C	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	41402162	rs3956342	T	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	41402579	rs6508953	A	G	13048.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr19	41403129	rs10574908	CA	C	676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=1.571;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:57,76:0.57:133
chr19	41403325	rs7252852	T	C	8300.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:153,390:0.72:543
chr19	41403982	rs11083583	G	GT	6188.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr19	41404196	rs10419393	A	G	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:27,69:0.72:96
chr19	41405962	rs4803400	T	G	14359.77	.	AC=1;AF=0.500;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	0/1:312,685:0.69:997
chr19	41414363	rs8100418	A	T	3118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-2.048;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:553,205:0.27:758
chr19	41415112	rs3844442	T	A	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	41416750	rs10419589	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	41416831	rs146260021	A	AT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.716;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	41442597	rs73038469	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr19	41447269	rs138190091	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.291;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=28.133;MLEAC=1;MLEAF=0.500;MQ=51.67;MQRankSum=-7.241;QD=0.92;ReadPosRankSum=-1.937;SOR=3.438;set=HC	GT:AD:AF:DP	0/1:138,20:0.13:158
chr19	41447479	rs34151237	T	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr19	41510127	rs2279342	A	T	3658.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;MQ=59.87;set=Intersection	GT:AD:AF:DP	0/1:80,169:0.68:249
chr19	41515702	rs2279345	T	C	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr19	41522715	rs3211371	C	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:238,122:0.34:360
chr19	41531487	rs11670798	A	G	3773.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:72,180:0.71:252
chr19	41531825	rs3745276	A	G	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:27,93:0.78:120
chr19	41532005	rs434606	G	A	4684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=0.491;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:91,220:0.71:311
chr19	41532133	rs62120870	A	G	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:16,56:0.78:72
chr19	41558800	rs11083604	T	C	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-3.957;QD=4.03;ReadPosRankSum=-0.664;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:174,69:0.28:243
chr19	41558878	rs56156262	G	A	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=-3.965;QD=3.93;ReadPosRankSum=1.740;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:223,83:0.27:306
chr19	41564417	rs12978001	C	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr19	41595901	.	C	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=7.010;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-6.187;QD=1.92;ReadPosRankSum=2.073;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:58,8:0.12:66
chr19	41595905	rs113406157	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=5.989;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-6.696;QD=2.18;ReadPosRankSum=1.722;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:63,9:0.12:72
chr19	41595906	.	C	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=6.272;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-6.646;QD=2.21;ReadPosRankSum=1.679;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr19	41622040	rs111706941	A	ATCTCACTCTCTCC	2695.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,47:0.55:86
chr19	41622189	rs305968	G	A	10669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.564;ClippingRankSum=0.000;DB;DP=735;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=1.042;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:242,491:0.67:733
chr19	41622205	rs58285195	T	C	10477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=1.405;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:238,491:0.67:729
chr19	41622267	rs74824096	G	A	9194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=0.803;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:208,438:0.68:646
chr19	41626438	rs34650210	CT	C	677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.822;QD=8.17;ReadPosRankSum=1.171;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:27,56:0.67:83
chr19	41627822	.	T	C	657	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=23;MQ=43.21;NF=27;NR=5;PP=657;QD=21.6178503921;SC=GAACACCCTTTGTCCTCCTCC;SbPval=0.89;Source=Platypus;TC=85;TCF=64;TCR=21;TR=32;WE=41627830;WS=41627812;set=Platypus	GT:AD:AF:DP	1/0:53,32:0.38:85
chr19	41627868	rs80319612	G	A	2854.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:135,140:0.51:275
chr19	41628677	rs305975	T	G	11186.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:206,527:0.72:733
chr19	41631716	rs371685919	G	A	3827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.12;MQRankSum=-0.054;QD=10.02;ReadPosRankSum=0.091;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:190,192:0.50:382
chr19	41634073	rs12461414	CT	TC	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	41700343	rs338600	C	T	8879.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr19	41700493	rs338599	G	C	18077.77	.	AC=2;AF=1.00;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr19	41704832	rs338592	A	G	9156.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:2,360:0.99:362
chr19	41743861	rs7249222	A	G	25226.77	.	AC=2;AF=1.00;AN=2;DB;DP=975;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,961:1.00:961
chr19	41748753	rs2304234	T	C	8458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=722;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.00;ReadPosRankSum=2.644;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:295,410:0.58:705
chr19	41759474	rs73045223	C	T	6184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=1.825;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:148,300:0.67:448
chr19	41759631	rs3835078	ACCC	A	4003.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.40;ReadPosRankSum=-2.899;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:37,104:0.74:141
chr19	41759637	rs116056574	C	T	3937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.13;ReadPosRankSum=-0.830;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:37,103:0.74:140
chr19	41798468	rs66479074	GAC	G	91.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr19	41811730	rs12745	T	C	9491.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	41822588	rs201081145	C	T	6734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.692;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-0.539;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:210,320:0.60:530
chr19	41837906	.	C	A	1409.77	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr19	41838206	rs8179181	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr19	41854480	rs60262005	TTTTA	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	41858921	rs1800470	G	A	2438.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:75,118:0.61:193
chr19	41863777	rs11668109	A	C	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-0.556;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:45,104:0.70:149
chr19	41869235	rs79033882	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr19	41869392	rs2241714	T	C	5161.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:145,251:0.63:396
chr19	41869468	rs2241713	G	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:52,90:0.63:142
chr19	41869487	rs3217387	C	CA	2098.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:34,64:0.65:98
chr19	41889423	rs11880674	A	T	2023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.11;ReadPosRankSum=-1.530;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:22,50:0.69:72
chr19	41889429	rs7259900	A	T	2005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.76;ReadPosRankSum=0.138;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:28,53:0.65:81
chr19	41889748	rs12602	T	C	4586.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:167,225:0.57:392
chr19	41895839	rs368205554	CT	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.135;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr19	41897674	rs878082	G	A	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr19	41897688	rs878083	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr19	41903220	rs10853751	G	A	6867.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:229,334:0.59:563
chr19	41903671	rs892044	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-0.214;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr19	41903675	rs892043	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.70;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	41919944	rs3213861	A	C	3436.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:141,165:0.54:306
chr19	41920211	rs3213860	T	C	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr19	41928336	rs284651	T	C	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:65,80:0.55:145
chr19	41928652	rs284652	C	T	5039.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:137,233:0.63:370
chr19	41928701	rs284653	C	T	11248.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:166,290:0.64:456
chr19	41928724	rs284654	G	A	12106.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:194,339:0.64:533
chr19	41928765	rs284655	C	T	10111.77	.	AC=1;AF=0.500;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	0/1:328,485:0.60:813
chr19	41928867	rs3217385	G	GC	14762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=960;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.229;QD=16.26;ReadPosRankSum=1.278;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:390,518:0.57:908
chr19	41930396	rs4674	A	G	16872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.617;ClippingRankSum=0.000;DB;DP=1392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=0.333;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:580,802:0.58:1382
chr19	41931454	rs113478859	A	AGGCCAGGGCCGG	2130.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr19	41932084	rs284660	G	T	7109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=-0.108;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:195,334:0.63:529
chr19	41932120	rs284661	C	T	7195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=0.256;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:207,347:0.63:554
chr19	41932275	rs284662	T	C	6649.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:152,315:0.67:467
chr19	41932612	rs284663	C	T	4569.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:185,224:0.55:409
chr19	41939297	rs1043413	C	G	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:152,100:0.40:252
chr19	41944237	rs2231940	T	C	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-1.553;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:135,57:0.30:192
chr19	41945837	rs13346603	T	A	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:169,91:0.35:260
chr19	41945848	rs13344547	G	T	3341.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:175,96:0.35:271
chr19	41945904	rs13344563	G	C	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:180,95:0.35:275
chr19	41949870	rs3745286	T	C	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr19	42027500	rs4803475	A	G	9645.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	42027514	rs4803476	T	A	9775.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	42083849	rs714106	C	A	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	42085873	rs2302188	A	G	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	42092815	rs3745936	T	A	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	42125660	rs1041994	T	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	42126448	rs9967607	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	42127907	rs4803488	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	42128202	rs8111279	G	A	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	42132314	rs1126454	G	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:64,59:0.48:123
chr19	42191934	rs34742303	GC	G	1708.73	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:144,68:0.32:212
chr19	42212753	rs111973464	A	AGCACAGAGACTG	3303.73	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:151,89:0.37:240
chr19	42219306	rs62117363	C	A	2419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=0.377;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:89,122:0.58:211
chr19	42221607	rs7249230	A	G	3971.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:303,212:0.41:515
chr19	42231159	rs9621	G	A	2971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.632;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:282,173:0.38:455
chr19	42260565	rs149583724	C	T	5238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.082;ClippingRankSum=0.000;DB;DP=880;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-0.563;QD=5.99;ReadPosRankSum=0.653;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:569,305:0.35:874
chr19	42312933	rs3752172	G	A	8181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-0.933;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:231,395:0.63:626
chr19	42373298	rs1366610	G	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=2.102;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr19	42373679	rs2075750	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr19	42373893	rs2075751	C	T	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:151,95:0.39:246
chr19	42375244	rs2075754	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,38:0.37:102
chr19	42409465	rs142018887	C	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr19	42462788	rs1075728	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr19	42463447	rs735571	C	T	5498.77	.	AC=1;AF=0.500;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	0/1:531,311:0.37:842
chr19	42471050	rs919390	G	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.071;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr19	42489516	rs2217342	A	C	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:151,100:0.40:251
chr19	42558629	rs3736109	G	A	7617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=0.323;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:223,362:0.62:585
chr19	42603776	rs1205817	A	G	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:98,120:0.55:218
chr19	42620952	.	C	G	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.720;QD=13.57;ReadPosRankSum=-1.176;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:40,81:0.67:121
chr19	42703833	rs2303652	A	G	7396.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:206,357:0.63:563
chr19	42713835	rs3745231	A	G	7256.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:244,357:0.59:601
chr19	42728836	rs3810151	T	C	4746.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:140,223:0.61:363
chr19	42735177	rs74259566	C	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr19	42736267	rs851609	A	G	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	42737192	rs190826917	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=1.424;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr19	42741124	rs2302485	A	G	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:47,60:0.56:107
chr19	42747229	rs11878620	GG	AC	8692.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;JOINED;set=Intersection	GT:AD:AF:DP	0/1:210,222:0.51:432
chr19	42747474	rs79021928	C	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr19	42753034	rs35493131	A	G	3123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.993;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:138,239:0.63:377
chr19	42753283	rs61735151	G	A	3691.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:133,183:0.58:316
chr19	42753649	rs11557114	G	C	4168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-1.980;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:126,196:0.61:322
chr19	42754403	rs76292187	G	A	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=12.37;ReadPosRankSum=-0.709;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:53,87:0.62:140
chr19	42793590	rs3826706	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,39:0.36:107
chr19	42795554	rs10410185	T	C	10261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=784;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=1.931;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:292,483:0.62:775
chr19	42799049	rs1052023	C	T	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:382,188:0.33:570
chr19	42820530	rs1206009	A	G	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:73,72:0.50:145
chr19	42820936	rs367666475	A	G	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:132,183:0.58:315
chr19	42848764	rs874002	A	G	4744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=1.495;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:144,230:0.61:374
chr19	42865283	rs73033437	G	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr19	42879855	.	T	A	9689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DP=860;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-1.155;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:355,475:0.57:830
chr19	43372386	rs1064491	T	C	5097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-6.131;QD=12.14;ReadPosRankSum=1.457;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:169,251:0.60:420
chr19	43420264	rs2074856	C	T	10983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=0.000;DB;DP=886;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-5.373;QD=12.47;ReadPosRankSum=-1.954;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:349,532:0.60:881
chr19	43420451	rs3198831	G	C	7853.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:149,364:0.71:513
chr19	43433570	rs2074857	A	C	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:67,115:0.63:182
chr19	43433805	rs1065178	A	G	5109.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:112,240:0.68:352
chr19	43439793	rs7245978	G	A	7213.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.91;MQRankSum=-0.352;QD=26.42;ReadPosRankSum=1.323;SOR=0.289;set=HC	GT:AD:AF:DP	1/1:1,272:1.00:273
chr19	43448156	rs55931787	G	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.290;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.34;MQRankSum=-6.201;QD=4.79;ReadPosRankSum=-2.518;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:55,24:0.30:79
chr19	43519362	rs11083680	C	T	8199.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr19	43519442	rs10414166	T	C	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr19	43530379	rs2526716	A	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	43530390	rs2736151	C	T	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr19	43530640	rs60941975	GT	G	3168.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	43568877	rs12977426	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr19	43575874	rs3746096	T	C	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:45,107:0.70:152
chr19	43674107	rs75994827	A	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr19	43674405	rs59577450	AT	A	405.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr19	43689004	rs2302112	G	A	6395.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:212,309:0.59:521
chr19	43690506	rs8107936	G	C	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:117,152:0.57:269
chr19	43690690	rs117998205	G	A	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr19	43708853	rs4802164	A	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	43708926	rs11673307	G	T	2961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.788;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.431;QD=9.74;ReadPosRankSum=0.610;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:154,150:0.49:304
chr19	43708968	rs11669435	T	C	4265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-2.707;QD=9.97;ReadPosRankSum=1.365;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:203,225:0.53:428
chr19	43708978	rs67183694	TC	T	5064.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.820;QD=11.89;ReadPosRankSum=1.693;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:202,224:0.53:426
chr19	43709072	rs56700032	G	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr19	43780616	rs201953667	G	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=52.49;MQRankSum=-5.741;QD=1.93;ReadPosRankSum=2.547;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:124,16:0.11:140
chr19	43780619	rs199862715	C	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=52.21;MQRankSum=-5.664;QD=2.05;ReadPosRankSum=2.659;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:119,16:0.12:135
chr19	43857873	rs45441892	G	C	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:63,86:0.58:149
chr19	43858044	rs45553433	A	T	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:247,152:0.38:399
chr19	43858066	rs45571738	G	A	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:234,121:0.34:355
chr19	43858317	rs4803613	G	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr19	43858578	rs77156507	G	A	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:77,52:0.40:129
chr19	43859549	rs1962260	T	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	43860053	rs71350665	G	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	43860192	rs71337594	T	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.43;QD=29.38;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	43860251	rs199668750	G	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	43860255	rs200662237	T	G	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	43864548	rs10425835	C	A	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	43865499	rs71339512	T	C	2698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.52;MQRankSum=-6.182;QD=14.43;ReadPosRankSum=0.779;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:58,129:0.69:187
chr19	43865840	rs28464741	G	T	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	43866449	rs78718189	G	A	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:367,211:0.37:578
chr19	43866617	rs36081957	C	T	1720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-0.703;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:147,92:0.38:239
chr19	43876891	rs7246785	G	A	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:269,162:0.38:431
chr19	43877394	rs3745996	C	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:104,67:0.39:171
chr19	43883124	rs4803622	C	T	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:46,84:0.65:130
chr19	43883273	rs113172076	G	C	2292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.06;MQRankSum=8.622;QD=10.92;ReadPosRankSum=3.706;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:95,115:0.55:210
chr19	43883313	rs4803623	C	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:93,54:0.37:147
chr19	43910649	rs11673673	G	T	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=0.596;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,46:0.85:54
chr19	43910764	rs8113556	A	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr19	43920443	rs3810375	C	G	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	43920612	rs35033974	G	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:195,111:0.36:306
chr19	43922061	rs3816438	A	G	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:55,92:0.63:147
chr19	43922300	rs2278834	G	A	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:50,109:0.69:159
chr19	43965804	rs28477226	G	T	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:112,142:0.56:254
chr19	43969532	rs73937427	C	A	3932.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:148,187:0.56:335
chr19	43969757	rs2259013	A	G	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	43979589	rs1055099	G	T	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:177,111:0.39:288
chr19	43982467	rs2682543	A	G	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr19	43983740	rs1133929	T	C	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	43999292	.	G	GGTCTGAGGGAGGAGGAGACTCGGGGCAGGACCCCTGA	2763.73	.	AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=51.18;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	43999634	rs1125030	A	C	11514.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,435:1.00:435
chr19	44001891	rs2682549	T	C	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	44005876	rs112058634	CCAAA	C	17942.73	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr19	44008256	rs199872128	G	C	2355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-1.741;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:64,106:0.62:170
chr19	44012005	rs2599452	G	A	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:3,125:0.98:128
chr19	44012880	rs2682578	A	G	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	44015777	rs373224789	C	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr19	44031324	rs3810381	C	T	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	44038647	rs373172077	AAAG	A	2796.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:49,71:0.59:120
chr19	44047493	rs72484243	CGTGT	C	557.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.86;ReadPosRankSum=0.398;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr19	44047826	rs2682557	T	A	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=26.25;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	44047946	.	CGCCTCTAGGTT	C	364.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr19	44050158	rs72554203	C	G	3078.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:125,154:0.55:279
chr19	44050195	rs25479	C	T	7649.73	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	44055582	rs2139720	C	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	44055726	rs25487	T	C	14523.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,568:1.00:568
chr19	44055898	rs25486	C	T	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	44057227	rs915927	T	C	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	44057767	rs149187925	C	T	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:71,106:0.60:177
chr19	44079687	rs3213245	G	A	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:54,70:0.56:124
chr19	44081288	rs2682585	A	G	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:31,71:0.70:102
chr19	44081499	rs2682586	A	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr19	44082791	rs12608635	T	C	2938.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:87,147:0.63:234
chr19	44082945	rs304731	T	C	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:67,122:0.65:189
chr19	44096754	rs76873184	G	T	3761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=1.714;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:120,179:0.60:299
chr19	44098903	rs304726	T	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr19	44111524	.	T	TAC	1034.73	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:40,37:0.48:77
chr19	44111568	rs35296355	TAC	T	631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.022;QD=2.43;ReadPosRankSum=1.393;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:215,45:0.17:260
chr19	44116774	rs116000451	G	C	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:80,104:0.57:184
chr19	44116956	rs13343696	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:103,48:0.32:151
chr19	44117647	rs114806295	A	G	6466.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:145,306:0.68:451
chr19	44118191	rs34163641	G	A	3634.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:334,203:0.38:537
chr19	44118680	rs1860149	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	44127603	rs111737263	A	C	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-1.385;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:64,113:0.64:177
chr19	44128437	rs2240633	A	G	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	44130546	rs78361402	C	T	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr19	44131297	rs407049	T	C	10923.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr19	44153100	rs4760	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:71,43:0.38:114
chr19	44159489	rs3786953	G	A	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,48:0.61:79
chr19	44248878	rs346532	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr19	44254972	rs164070	C	T	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	44268654	rs12609587	T	C	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.994;QD=10.39;ReadPosRankSum=-0.467;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:60,30:0.33:90
chr19	44268678	rs12611034	C	T	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=1.160;QD=8.92;ReadPosRankSum=0.849;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:72,31:0.30:103
chr19	44268730	rs145810077	TGTC	T	612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=0.911;QD=9.01;ReadPosRankSum=0.739;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:49,19:0.28:68
chr19	44273516	rs347519	T	C	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:74,26:0.26:100
chr19	44274041	rs2306799	G	A	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:96,37:0.28:133
chr19	44276370	rs3760979	A	G	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	44278779	rs649540	T	G	4147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.654;QD=8.64;ReadPosRankSum=0.175;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:352,128:0.27:480
chr19	44278781	rs563995	G	A	4147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.622;QD=9.10;ReadPosRankSum=-0.567;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:331,125:0.27:456
chr19	44280837	rs514328	G	A	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	44280980	rs35773079	T	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	44302624	rs349053	T	C	12538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.13;ReadPosRankSum=0.881;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:243,586:0.71:829
chr19	44303066	rs11547806	C	G	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	44306389	rs72214885	GCCCCCA	G	13003.73	.	AC=1;AF=0.500;AN=2;DB;DP=488;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:147,325:0.69:472
chr19	44351107	rs10421861	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr19	44351166	rs79626467	GGGAGAT	G	2937.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:58,75:0.56:133
chr19	44351694	rs2195980	C	T	7274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=1.084;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:149,333:0.69:482
chr19	44351836	rs957569	G	A	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:58,133:0.70:191
chr19	44352665	rs2356437	TG	CA	5849.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;JOINED;set=Intersection	GT:AD:AF:DP	0/1:61,145:0.70:206
chr19	44352688	rs2883946	G	A	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:55,120:0.69:175
chr19	44376681	rs1050054	G	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.986;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:81,31:0.28:112
chr19	44377357	rs239942	C	T	9621.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr19	44377669	rs12977303	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:207,82:0.28:289
chr19	44417575	rs417699	A	G	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:289,109:0.27:398
chr19	44418077	rs407731	C	T	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:317,146:0.32:463
chr19	44418343	rs406968	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:300,114:0.28:414
chr19	44418544	rs425221	A	G	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:287,93:0.24:380
chr19	44418680	rs388685	G	C	3531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=0.390;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:376,118:0.24:494
chr19	44418693	rs388706	T	C	3929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-1.639;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:390,137:0.26:527
chr19	44418824	rs399098	C	T	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:207,96:0.32:303
chr19	44419030	rs420242	A	G	10533.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr19	44422982	rs423320	G	A	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=-0.637;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:152,79:0.34:231
chr19	44423195	rs423752	G	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:49,10:0.17:59
chr19	44423981	rs384329	T	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:92,44:0.32:136
chr19	44426467	rs57712519	T	TG	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=1.231;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr19	44469577	rs451601	T	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	44470189	rs454301	T	A	17468.77	.	AC=2;AF=1.00;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	1/1:0,678:1.00:678
chr19	44470420	rs439676	T	C	10404.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr19	44470548	rs453640	A	G	14292.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr19	44470663	rs435590	G	C	22810.77	.	AC=2;AF=1.00;AN=2;DB;DP=897;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,885:1.00:885
chr19	44471209	rs365745	T	A	7732.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr19	44471323	rs366111	G	A	11436.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr19	44471632	rs56887248	CT	C	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=0.213;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr19	44500478	rs398235	A	T	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	44500761	rs448921	G	A	23000.77	.	AC=2;AF=1.00;AN=2;DB;DP=906;set=Intersection	GT:AD:AF:DP	1/1:1,895:1.00:896
chr19	44501116	rs388812	A	G	14814.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr19	44501227	rs388471	A	G	10548.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	44501627	rs35292176	T	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	44503379	rs452554	C	T	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	44503541	rs11314755	TA	T	2919.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	44503569	rs7252394	G	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	44503607	rs7253205	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	44511202	rs2356549	A	T	7918.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr19	44511223	rs424147	T	G	7741.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	44511389	rs2191566	G	T	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	44530390	rs8101750	T	C	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	44530444	rs3830527	GAC	G	2375.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	44535999	rs7258517	G	T	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=26.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	44564401	rs12610472	T	C	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	44564981	rs3826941	G	A	12208.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr19	44565125	rs4502339	A	G	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	44570393	rs6509138	C	A	6819.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	44570551	rs4375771	G	A	6342.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr19	44571154	rs4433920	T	C	11681.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr19	44580440	rs201907991	CT	C	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.890;QD=1.63;ReadPosRankSum=1.016;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:110,53:0.33:163
chr19	44580758	rs57895932	T	C	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	44585159	rs4803674	T	A	14973.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr19	44586076	rs4553729	T	C	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.67;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	44589999	rs139900131	TCTC	T	9966.73	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:2,393:0.99:395
chr19	44590558	rs7255701	C	T	6541.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	44591360	rs8113249	G	A	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	44604914	rs62115526	T	C	10630.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.99;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr19	44605324	rs118149610	A	G	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.092;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:182,65:0.26:247
chr19	44610665	rs2068061	A	G	12476.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr19	44610798	rs4239529	A	T	12715.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr19	44611066	rs7508149	T	C	23043.77	.	AC=2;AF=1.00;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	1/1:0,892:1.00:892
chr19	44611420	rs4508518	A	G	21113.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:0,811:1.00:811
chr19	44612005	rs3746321	A	G	10364.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=42.83;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	44612014	rs3200505	A	T	9861.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=44.22;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	44612231	rs3746319	A	G	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	44634903	rs10413195	A	G	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	44662274	rs35483237	T	TA	405.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.390;QD=9.43;ReadPosRankSum=1.537;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:12,31:0.72:43
chr19	44676148	rs2232801	G	C	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	44677233	rs12459795	A	G	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	44680996	rs10413887	A	G	4038.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:86,183:0.68:269
chr19	44721699	rs9304640	C	T	14170.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.628;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.00;ReadPosRankSum=-0.029;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:2,543:1.00:545
chr19	44739303	rs2279073	T	C	9364.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr19	44739399	rs2279072	T	C	9888.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	44764064	rs1233444	A	G	12306.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr19	44769974	rs12462723	C	T	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	44778405	rs1233428	A	C	9206.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr19	44782962	.	C	CT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.158;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr19	44792701	rs2125579	T	G	13797.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr19	44792969	rs2609908	G	A	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	44802798	rs77806709	C	A	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	44807359	rs67283809	GAT	G	517.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	44832684	rs2609880	T	G	16418.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:34,651:0.95:685
chr19	44832875	rs2722722	A	G	12137.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr19	44832992	rs2722723	C	G	8837.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	44833506	rs4325673	C	T	10052.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr19	44833851	rs4280359	G	C	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	44840789	rs2571104	T	C	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	44841030	rs113034578	CT	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.629;QD=3.59;ReadPosRankSum=1.843;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	44845385	rs74260472	C	T	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	44847480	rs5828194	GA	G	9234.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=-9.552;QD=24.63;ReadPosRankSum=-0.661;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:4,371:0.99:375
chr19	44890697	rs1836280	A	G	12684.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:57,538:0.90:595
chr19	44890801	rs12610859	T	C	14132.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr19	44891784	rs2571089	T	C	11471.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:2,428:1.00:430
chr19	44892225	rs114985922	T	G	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-16.444;QD=1.80;ReadPosRankSum=-0.307;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:487,59:0.11:546
chr19	44892228	rs117953191	G	C	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-16.329;QD=1.83;ReadPosRankSum=-1.339;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:480,59:0.11:539
chr19	44892333	rs2571090	A	T	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	44896487	rs2571123	G	C	5293.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	44896857	rs2571122	G	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	44898575	rs56836152	T	TA	56	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	44898662	rs2571124	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	44901526	rs2722650	A	G	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	44901557	rs2722651	A	G	177.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	44932972	rs1434579	C	T	6845.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:135,310:0.70:445
chr19	44933947	rs12151338	G	A	5123.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:88,233:0.73:321
chr19	44934489	rs2571174	G	A	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	44947050	rs204548	T	C	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=5.79;ReadPosRankSum=3.547;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:227,122:0.35:349
chr19	44976058	rs2571053	C	T	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=0.030;QD=2.77;ReadPosRankSum=0.469;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:127,38:0.23:165
chr19	44977071	rs1897824	C	T	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:303,131:0.30:434
chr19	44977240	rs1897823	A	G	4185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=2.335;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-4.407;QD=11.02;ReadPosRankSum=-1.018;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:258,122:0.32:380
chr19	44977262	rs17714261	T	C	4289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-8.150;QD=9.68;ReadPosRankSum=0.471;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:306,137:0.31:443
chr19	44977382	rs1897822	C	T	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.673;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=7.399;MLEAC=1;MLEAF=0.500;MQ=56.91;MQRankSum=-11.256;QD=0.45;ReadPosRankSum=-1.805;SOR=1.240;set=HC	GT:AD:AF:DP	0/1:285,41:0.13:326
chr19	44977405	rs1897821	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-14.329;QD=0.34;ReadPosRankSum=1.872;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:196,29:0.13:225
chr19	44977417	rs55771561	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-13.508;QD=0.19;ReadPosRankSum=3.826;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:176,26:0.13:202
chr19	44981375	rs954314	T	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:67,37:0.36:104
chr19	44981883	rs1897820	C	G	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:69,31:0.31:100
chr19	44983567	rs2253563	C	G	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:160,51:0.24:211
chr19	44983728	rs35167767	TG	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.891;QD=3.52;ReadPosRankSum=-0.221;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr19	45001232	rs2571109	C	T	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.241;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:147,52:0.26:199
chr19	45001346	rs2571108	G	A	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-0.965;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:161,75:0.32:236
chr19	45004042	rs12459496	T	C	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr19	45004305	rs12977470	G	C	16071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=0.753;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:299,746:0.71:1045
chr19	45015596	rs1004605	T	G	3772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-0.947;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:65,173:0.73:238
chr19	45016116	rs8100718	A	G	2321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=0.519;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:46,111:0.71:157
chr19	45016990	rs5828200	CT	C	11792.73	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	45017249	rs1465723	T	C	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.412;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=3.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-1.335;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:232,84:0.27:316
chr19	45017477	rs10706694	TA	T	4803.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=41.77;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	45017486	rs4802229	T	C	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=0.000;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:33,73:0.69:106
chr19	45017503	rs35128033	CT	C	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=0.201;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,35:0.85:41
chr19	45024581	rs12982449	C	G	8133.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	45024875	rs12975863	T	C	6269.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	45024879	rs144346131	C	CGT,CGTGT	4309.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=158;set=Intersection	GT:AF:DP	1/2:0.15,0.82:113
chr19	45028169	rs7260180	C	T	8421.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr19	45033379	rs71940010	GCA	G,GCACA	4923.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=389;set=Intersection	GT:AF:DP	1/2:0.71,0.19:289
chr19	45121297	rs17658507	T	C	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,68:0.65:105
chr19	45126994	rs846857	A	G	8010.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:138,365:0.73:503
chr19	45138648	rs140576977	TTC	T	806.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=1.168;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr19	45138669	rs60475615	TC	T	300.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.038;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:47,23:0.33:70
chr19	45138671	rs370451038	TCTC	T	97.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.893;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.220;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr19	45147340	rs11540084	G	T	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	45147396	rs11540085	C	T	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:185,85:0.31:270
chr19	45147518	rs5828211	C	CA	26234.73	.	AC=2;AF=1.00;AN=2;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=43.87;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,598:1.00:598
chr19	45147542	rs439446	T	C	21999.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,490:1.00:490
chr19	45147576	rs5828212	CG	C	10361.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	45157113	rs71171278	A	AG	24948.73	.	AC=2;AF=1.00;AN=2;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=39.10;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,638:1.00:638
chr19	45161895	rs80332649	A	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	45162038	rs203710	A	G	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	45162189	rs35385129	C	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:71,25:0.26:96
chr19	45182381	rs145179850	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-0.017;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr19	45202418	.	C	T	2135.77	.	AC=1;AF=0.500;AN=2;DP=150;set=Intersection	GT:AD:AF:DP	0/1:46,99:0.68:145
chr19	45203837	rs2919848	G	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr19	45206532	rs2965167	G	A	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	45211407	rs61744497	C	T	2454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.140;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:383,162:0.30:545
chr19	45213701	rs57684876	C	T	9540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=1.918;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:156,439:0.74:595
chr19	45251156	rs2965169	A	C	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-0.675;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,33:0.70:47
chr19	45322744	rs1135062	A	G	2887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=1323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.536;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:1046,268:0.20:1314
chr19	45324138	rs28399637	G	A	11697.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr19	45349963	rs2306149	C	A	2481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.390;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.750;QD=6.35;ReadPosRankSum=-1.456;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:249,142:0.36:391
chr19	45389224	rs283814	A	G	3294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=1177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-1.573;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:905,267:0.23:1172
chr19	45394969	rs184017	T	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr19	45395619	rs2075650	A	G	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:126,39:0.24:165
chr19	45395714	rs157581	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr19	45396144	rs11556505	C	T	904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.619;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=0.860;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:118,56:0.32:174
chr19	45396219	rs157582	C	T	1807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.218;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:365,132:0.27:497
chr19	45404691	rs405697	A	G	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:139,64:0.32:203
chr19	45409167	rs440446	C	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:72,33:0.31:105
chr19	45410002	rs769449	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr19	45411941	rs429358	T	C	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-1.508;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:209,65:0.24:274
chr19	45445767	rs370742602	G	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.411;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr19	45448385	rs186448850	T	C	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.383;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:344,117:0.25:461
chr19	45458463	rs8102895	A	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr19	45465455	rs11421478	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=8.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-2.367;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	45476422	rs204481	T	C	14000.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr19	45477910	rs11318909	CT	C	3033.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	45488434	rs204472	A	G	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	45488567	rs204471	T	C	8839.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,356:0.99:358
chr19	45489548	rs58800134	A	AG	2070.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	45490636	rs204468	T	C	13713.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr19	45493635	rs875255	C	G	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr19	45494247	rs11405080	A	AC	19104.73	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr19	45494349	rs11333249	TC	T	3131.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	45496303	rs9193	T	C	10622.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr19	45506732	.	CAAAA	C	1982.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-0.139;QD=24.78;ReadPosRankSum=1.735;SOR=0.568;set=HC	GT:AD:AF:DP	1/1:12,68:0.85:80
chr19	45506772	rs7251460	T	A	6494.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.08;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr19	45513146	rs150557566	GGCCTTC	G	1669.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr19	45536036	rs10424046	C	G	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	45537417	rs143167603	AAAAT	A	1417.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	45561063	rs4803794	A	G	9548.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr19	45567606	.	GCTC	G	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0.000;DP=435;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.813;QD=1.92;ReadPosRankSum=1.503;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:370,47:0.11:417
chr19	45571569	.	T	TC	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-0.622;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	45571579	rs59705171	AC	A	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.054;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	45571781	rs10445571	T	C	12208.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr19	45571900	rs34337168	G	GCC	5723.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:3,132:0.98:135
chr19	45571903	rs36097205	G	C	6009.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	45572247	rs376538298	CA	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.000;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr19	45644720	rs66519628	AGGAAGAGGCAGCTCAGGCTCCC	A	3924.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=3.036;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.123;QD=7.48;ReadPosRankSum=1.318;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:401,124:0.24:525
chr19	45645747	.	C	T	5479.77	.	AC=1;AF=0.500;AN=2;DP=368;set=Intersection	GT:AD:AF:DP	0/1:97,261:0.73:358
chr19	45649386	rs968445	A	G	2043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.159;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:348,133:0.28:481
chr19	45649503	rs112250728	T	TGTAA	1565.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:123,47:0.28:170
chr19	45662432	rs77766022	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr19	45662459	rs8109620	G	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,7:0.19:37
chr19	45681560	rs7254936	T	C	14171.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr19	45721596	rs3826909	G	A	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:66,161:0.71:227
chr19	45769386	rs2240671	G	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.204;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr19	45769575	rs2240672	G	A	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=2.164;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:223,83:0.27:306
chr19	45774680	rs12984234	A	G	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-1.177;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:342,108:0.24:450
chr19	45781081	rs370396091	TTGTGTGTG	T,TTG	1469.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.746;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.337;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.87;MQRankSum=0.000;QD=38.68;ReadPosRankSum=-0.839;SOR=1.235;set=HC	GT:AD:AF:DP	1/2:1,11,26:0.29,0.68:38
chr19	45781916	rs141826060	C	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr19	45797593	rs34313092	T	C	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.407;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:242,81:0.25:323
chr19	45801018	rs173179	T	C	18968.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,728:1.00:728
chr19	45801337	rs138525840	T	TTCC	3812.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=2.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=2.116;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:302,117:0.28:419
chr19	45801579	rs139000043	GGGTCTGTGCGT	G	2730.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:26,68:0.72:94
chr19	45803008	rs73570398	G	A	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:28,86:0.75:114
chr19	45810035	rs4884	A	G	19258.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:2,755:1.00:757
chr19	45811692	rs149354459	C	G	12729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=894;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.365;QD=14.58;ReadPosRankSum=0.039;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:277,596:0.68:873
chr19	45814947	rs17875617	C	T	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr19	45815033	rs17875616	G	T	5141.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:92,240:0.72:332
chr19	45815248	rs10402747	T	C	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:27,91:0.77:118
chr19	45818628	rs377993	A	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr19	45818835	rs1133190	A	G	3029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=1.516;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:346,177:0.34:523
chr19	45820927	rs12976956	G	A	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:133,61:0.31:194
chr19	45823053	.	C	CT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=1.047;QD=2.35;ReadPosRankSum=3.555;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr19	45849690	rs12979984	G	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:33,65:0.66:98
chr19	45849751	rs9749477	C	T	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:54,117:0.68:171
chr19	45849909	rs9749618	A	G	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:57,108:0.65:165
chr19	45850598	rs11418793	C	CA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-2.607;QD=1.10;ReadPosRankSum=-0.254;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr19	45852954	.	T	TGGGGTG	260	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=12;HapScore=2;MGOF=20;MMLQ=25;MQ=60.77;NF=0;NR=8;PP=260;QD=34.25;SC=AACGTGAGGGTGGGGGGGGGC;SbPval=1.0;Source=Platypus;TC=23;TCF=0;TCR=23;TR=8;WE=45852962;WS=45852944;set=Platypus	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	45853517	rs61513187	CA	C	136.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-1.559;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr19	45854503	rs143201119	CCCTCA	C	8366.73	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:192,389:0.67:581
chr19	45854919	rs13181	T	G	10548.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:148,485:0.77:633
chr19	45855055	rs377222215	A	AC	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-0.107;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr19	45855060	rs1799790	C	G	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr19	45855524	rs1052555	G	A	5442.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:117,256:0.69:373
chr19	45856144	rs1799787	G	A	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:34,87:0.72:121
chr19	45856468	rs238417	G	C	8843.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	45858245	rs3916868	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:89,29:0.25:118
chr19	45859072	rs35665496	CT	C	832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.209;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.965;QD=4.81;ReadPosRankSum=-0.821;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:70,103:0.60:173
chr19	45865002	rs171140	C	A	13164.77	.	AC=1;AF=0.500;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	0/1:272,597:0.69:869
chr19	45865217	rs238403	T	C	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr19	45867259	rs1799793	C	T	3700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.247;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=0.263;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:65,166:0.72:231
chr19	45868006	rs238405	A	T	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:37,90:0.71:127
chr19	45868038	rs1799786	G	A	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:64,148:0.70:212
chr19	45868309	rs238406	T	G	7208.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:97,315:0.76:412
chr19	45868478	rs238407	T	A	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:84,177:0.68:261
chr19	45872036	rs1799783	C	T	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:31,77:0.71:108
chr19	45873942	rs3810366	G	C	4428.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:79,191:0.71:270
chr19	45909934	rs967591	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr19	45910003	rs8113779	G	T	3488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=0.838;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:44,162:0.79:206
chr19	45911309	rs35708119	C	CA	1384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.138;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:53,73:0.58:126
chr19	45911330	rs2013521	T	A	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=0.280;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:79,106:0.57:185
chr19	45912002	rs735482	A	C	5746.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:92,266:0.74:358
chr19	45912343	rs762562	A	G	4472.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:149,222:0.60:371
chr19	45912406	rs2336219	G	A	6763.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:169,308:0.65:477
chr19	45913093	rs1007616	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=0.674;QD=7.69;ReadPosRankSum=1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr19	45918849	rs10401261	A	G	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.311;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=7.519;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-0.350;QD=16.40;ReadPosRankSum=-0.520;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr19	45918893	rs72086112	C	CA	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.324;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.593;QD=4.14;ReadPosRankSum=1.491;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr19	45920264	rs3212967	G	A	603.56	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:3,27:0.90:30
chr19	45922323	rs3212961	G	T	10079.77	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:206,481:0.70:687
chr19	45923653	rs11615	A	G	11168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;ClippingRankSum=0.000;DB;DP=787;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=-0.260;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:252,528:0.68:780
chr19	45924362	rs3212948	G	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr19	45971961	rs2282695	C	G	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	45972039	rs2282696	A	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	45974593	rs2276469	T	C	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	45998346	rs2298887	C	A	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.142;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	46002766	rs45440199	G	T	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr19	46003399	rs147723657	C	CT	628.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=14.97;ReadPosRankSum=1.696;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:5,37:0.88:42
chr19	46003601	rs2156916	C	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	46011231	rs189566350	G	A	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.693;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:133,47:0.26:180
chr19	46026970	rs11880111	T	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:96,39:0.29:135
chr19	46027752	rs4802260	C	T	9899.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr19	46032735	rs149252540	CAG	C	5183.73	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:433,160:0.27:593
chr19	46057081	rs3826860	A	G	11416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DB;DP=801;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=1.113;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:251,538:0.68:789
chr19	46088097	rs45598532	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,12:0.24:49
chr19	46120003	rs73050347	G	A	7409.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:138,349:0.72:487
chr19	46121020	rs12985660	T	C	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr19	46125008	rs34741603	C	CT	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.597;QD=2.02;ReadPosRankSum=-0.205;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:136,46:0.25:182
chr19	46130191	rs1548026	T	G	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr19	46136268	rs111885973	C	CT	19802.73	.	AC=1;AF=0.500;AN=2;DB;DP=938;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:304,606:0.67:910
chr19	46136487	rs16979952	T	C	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:19,61:0.76:80
chr19	46142053	rs7252448	C	T	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:65,112:0.63:177
chr19	46145025	rs2286756	G	T	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-1.297;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:218,79:0.27:297
chr19	46148386	rs11670462	C	T	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr19	46175976	rs13306396	TATC	T	1356.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr19	46177235	rs55669001	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr19	46180150	rs4803846	A	G	5208.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:116,233:0.67:349
chr19	46180184	rs11672660	C	T	8737.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:185,398:0.68:583
chr19	46180414	rs34783010	G	T	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:13,50:0.79:63
chr19	46181392	rs1800437	G	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr19	46196634	rs2302593	C	G	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr19	46199106	rs34362798	CT	C	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr19	46202172	rs2287019	C	T	5037.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:75,230:0.75:305
chr19	46204938	rs4803847	C	T	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	46205050	rs4803848	T	C	21749.77	.	AC=2;AF=1.00;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	1/1:0,844:1.00:844
chr19	46206098	rs62111730	G	A	2160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.011;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:339,130:0.28:469
chr19	46206262	rs17850756	G	A	7868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=1583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.232;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:1074,490:0.31:1564
chr19	46206425	rs11672416	T	C	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr19	46214700	.	T	TA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=0.33;ReadPosRankSum=0.071;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:142,31:0.18:173
chr19	46262286	rs725660	C	A	3184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DB;DP=924;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=1.908;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:676,234:0.26:910
chr19	46265033	rs139931380	A	T	9587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=-1.215;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:151,433:0.74:584
chr19	46268902	rs2341097	C	T	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.449;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:470,155:0.25:625
chr19	46269313	rs2014377	G	C	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.416;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:220,63:0.22:283
chr19	46282890	rs2070737	A	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=0.195;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr19	46285362	rs149612963	G	GC	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.475;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr19	46288706	rs3760843	A	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr19	46289392	rs8110017	G	C	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=1.316;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:201,92:0.31:293
chr19	46289503	rs8109951	C	T	3829.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:429,223:0.34:652
chr19	46294136	rs72626215	G	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:56,19:0.25:75
chr19	46299418	.	C	CT	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-0.424;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr19	46313825	rs10407137	A	T	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:455,207:0.31:662
chr19	46317709	rs74450753	G	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr19	46318758	rs140334478	GCCCCGCCCCGTCC	G	1550.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr19	46318963	rs3810331	C	A	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	46319415	rs1132645	G	C	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.860;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:107,28:0.21:135
chr19	46320041	rs74821481	G	T	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.808;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr19	46326200	rs12976060	A	G	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	46327166	rs11671524	G	A	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.233;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.551;QD=3.72;ReadPosRankSum=0.576;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:122,39:0.24:161
chr19	46327185	rs7252416	G	C	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	46327209	rs11284049	CT	C	2386.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	46329438	rs7246155	G	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	46329781	rs28362500	GT	G	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.604;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:69,12:0.15:81
chr19	46331302	rs4239535	C	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	46332194	rs3745929	C	T	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	46333632	rs4516331	G	A	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	46334955	rs4803866	C	T	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	46338492	rs7256192	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:181,77:0.30:258
chr19	46352203	rs2303013	C	T	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:18,80:0.82:98
chr19	46357313	rs11670136	T	C	3713.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:60,154:0.72:214
chr19	46366371	rs151045853	TCCG	T	9017.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=3.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.68;ReadPosRankSum=2.983;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:114,224:0.66:338
chr19	46367901	rs1363538	T	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	46376217	rs3810327	C	A	15357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=970;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=0.272;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:246,706:0.74:952
chr19	46404428	rs35633692	G	A	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:58,153:0.73:211
chr19	46404579	rs10423899	A	G	11680.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,434:1.00:434
chr19	46443739	rs28742045	T	G	9837.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	46443886	rs1047061	C	A	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-2.216;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr19	46498353	rs892217	C	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.739;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:406,81:0.17:487
chr19	46498827	rs746401	G	A	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-1.737;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr19	46498835	rs55951953	C	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.553;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-0.514;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr19	46506203	rs12608903	C	G	3342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=2.222;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:75,162:0.68:237
chr19	46511548	rs2287305	T	C	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	46520026	rs2287306	A	G	15713.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,623:1.00:623
chr19	46543249	rs756401	T	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:88,33:0.27:121
chr19	46546250	rs4803890	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:121,48:0.28:169
chr19	46627949	.	A	C	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=2.026;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:253,87:0.26:340
chr19	46664168	rs2270403	G	A	8940.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:1,343:1.00:344
chr19	46733912	rs2286802	A	G	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	46733916	rs2286803	G	A	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	46734022	rs73051957	C	G	7494.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:2,298:0.99:300
chr19	46800228	rs3810299	T	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.654;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr19	46800433	rs3826795	G	A	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	46806800	rs111637320	TC	T	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-1.684;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr19	46808371	rs4802306	C	T	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	46811388	rs7251867	G	A	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:112,48:0.30:160
chr19	46811984	rs2311054	A	G	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	46812126	rs757638	A	G	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	46812336	rs759299	G	A	9764.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	46815297	rs8101216	T	C	17917.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,691:1.00:691
chr19	46815499	rs8101480	T	C	36365.77	.	AC=2;AF=1.00;AN=2;DB;DP=1440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,1409:1.00:1409
chr19	46815705	rs3752207	A	C	37228.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=1453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.03;ReadPosRankSum=2.078;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:4,1426:1.00:1430
chr19	46815969	rs146459631	G	GGTGTGTGT,GGTGTGTGTGT	955.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/1:1.00:24
chr19	46823702	rs3764609	A	G	13138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=911;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-2.674;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:276,622:0.69:898
chr19	46856963	rs917947	G	A	8070.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:184,381:0.67:565
chr19	46857015	rs917948	C	T	13594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=936;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=0.793;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:291,640:0.69:931
chr19	46857286	rs2075144	G	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,18:0.25:71
chr19	46887007	rs1024781	G	C	14629.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:3,576:0.99:579
chr19	46890247	rs58701793	G	C	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr19	46892111	rs759290	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=1.875;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr19	46892168	rs8106745	T	C	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.64;ReadPosRankSum=-1.732;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	46893238	rs759291	A	C	27126.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150;ClippingRankSum=0.000;DB;DP=1088;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.33;ReadPosRankSum=1.348;SOR=0.287;set=HC	GT:AD:AF:DP	1/1:1,1070:1.00:1071
chr19	46893465	rs2311213	A	G	13029.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr19	46972967	rs2288916	G	C	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	46974307	rs3826852	C	T	10088.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	46996933	rs149291954	G	A	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=10.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-1.387;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:274,73:0.21:347
chr19	47030432	rs3745795	T	C	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	47105585	rs35630463	A	AT,ATT	6808.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=308;set=Intersection	GT:AF:DP	1/2:0.67,0.33:279
chr19	47105716	rs73056645	G	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr19	47109011	rs3729510	T	C	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	47111663	rs3729760	T	C	13730.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:1,522:1.00:523
chr19	47112648	rs10113	T	C	30503.77	.	AC=2;AF=1.00;AN=2;DB;DP=1221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.44;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,1199:1.00:1199
chr19	47112740	rs710889	C	T	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr19	47124457	rs73940735	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:89,31:0.26:120
chr19	47124714	rs2229129	T	G	17857.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.00;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr19	47124720	rs139011418	G	A	6616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-0.619;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:148,310:0.68:458
chr19	47126614	rs12459883	C	G	7754.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr19	47137481	rs3833245	GAT	G	7714.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	47137972	rs12460911	G	A	4353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=-1.463;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:91,199:0.69:290
chr19	47151717	rs45555133	G	A	6367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.837;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=0.720;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:115,288:0.71:403
chr19	47153145	rs375074031	CA	C,CAA	982.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.962;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.520;QD=7.99;ReadPosRankSum=1.328;SOR=0.861;set=HC	GT:AD:AF:DP	1/2:20,75,28:0.61,0.23:123
chr19	47177913	rs314665	A	G	35611.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.175;ClippingRankSum=0.000;DB;DP=1401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;MQRankSum=0.054;QD=25.66;ReadPosRankSum=1.199;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:1,1387:1.00:1388
chr19	47193850	rs314671	T	C	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,233:0.99:235
chr19	47197230	rs80021620	C	G	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:318,124:0.28:442
chr19	47197399	rs114751214	C	T	3650.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:470,224:0.32:694
chr19	47200605	rs79552142	C	T	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.74;ReadPosRankSum=-2.233;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:10,25:0.71:35
chr19	47200618	rs10413222	C	T	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.87;ReadPosRankSum=0.077;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:12,27:0.69:39
chr19	47201177	rs77926850	G	T	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=2.316;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:160,57:0.26:217
chr19	47204341	rs74510632	G	A	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:360,196:0.35:556
chr19	47208017	rs185313998	C	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.372;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr19	47208021	rs190211982	G	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.932;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:42,8:0.16:50
chr19	47212593	rs10423365	A	G	3476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.88;ReadPosRankSum=-2.597;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:59,160:0.73:219
chr19	47217093	.	G	GC	1189.73	.	AC=1;AF=0.500;AN=2;DP=155;set=Intersection	GT:AD:AF:DP	0/1:94,53:0.36:147
chr19	47225101	rs146598619	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.683;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:79,15:0.16:94
chr19	47228466	rs115347379	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr19	47228707	rs116058148	G	A	3332.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:486,211:0.30:697
chr19	47228985	rs313844	G	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.73;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	47228990	rs3848529	T	C	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.79;ReadPosRankSum=0.728;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr19	47231098	rs150598540	C	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr19	47236268	rs11666600	G	C	11231.77	.	AC=1;AF=0.500;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	0/1:297,531:0.64:828
chr19	47239919	rs2270685	G	C	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:62,97:0.61:159
chr19	47241659	rs12976352	C	T	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	47242152	rs34301473	G	A	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:78,173:0.69:251
chr19	47249296	rs12984041	G	C	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	47249297	.	C	T	2524.77	.	AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	47260261	rs185647378	G	A	1739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.133;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:268,115:0.30:383
chr19	47280689	rs3027960	G	C	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=1.341;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:118,66:0.36:184
chr19	47280789	rs313835	C	T	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	47282162	rs2070246	G	A	14014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=965;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=-0.772;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:304,659:0.68:963
chr19	47282240	rs3745609	A	G	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:216,126:0.37:342
chr19	47287169	rs313852	G	A	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-1.382;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:21,52:0.71:73
chr19	47287939	rs313853	T	C	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.348;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:114,28:0.20:142
chr19	47342867	rs312185	A	C	8457.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr19	47524151	.	GCC	G	659.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.248;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	47548327	rs10423289	A	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	47549990	rs10411485	C	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.658;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:108,38:0.26:146
chr19	47575114	.	C	G	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-0.423;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:271,72:0.21:343
chr19	47585392	rs45460195	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:74,25:0.25:99
chr19	47634313	rs177918	T	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	47731829	rs3810294	C	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	47735875	rs45607935	T	C	7616.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.53;ReadPosRankSum=-2.060;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:19,319:0.94:338
chr19	47778054	rs34227852	G	GC	1382.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.39;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	47778101	rs35912982	T	TC	1868.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.64;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	47823038	rs4467185	G	A	8261.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,318:1.00:319
chr19	47823484	rs4804049	T	C	14512.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,564:1.00:564
chr19	47823871	rs11880097	G	T	16472.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:2,649:1.00:651
chr19	47885180	rs889167	A	G	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr19	47916598	rs11673488	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	47916654	.	CA	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.756;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.725;QD=1.67;ReadPosRankSum=-2.840;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:48,22:0.31:70
chr19	47922426	rs62130535	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr19	47933190	rs142312177	A	AG	3739.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	47933257	rs73940834	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:138,49:0.26:187
chr19	47933728	rs8104926	A	G	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:70,171:0.71:241
chr19	47935352	rs4801722	T	C	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	47944710	rs2254560	T	C	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.01;ReadPosRankSum=-0.097;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:19,69:0.78:88
chr19	47980153	rs2293424	G	A	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:60,127:0.68:187
chr19	47994180	rs115819872	G	T	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-0.305;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:99,50:0.34:149
chr19	47996557	.	C	T	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.674;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:107,37:0.26:144
chr19	47998769	rs73940866	G	A	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.655;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:247,101:0.29:348
chr19	48033018	rs7248754	C	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:82,102:0.55:184
chr19	48036304	.	G	A	603.77	.	AC=1;AF=0.500;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	0/1:61,34:0.36:95
chr19	48044243	rs2974239	A	G	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-0.447;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:69,66:0.49:135
chr19	48044281	rs2974240	T	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=0.655;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:27,28:0.51:55
chr19	48047729	rs143702897	G	C	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:127,193:0.60:320
chr19	48244401	rs35910701	G	A	7680.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:223,360:0.62:583
chr19	48244692	rs3833256	C	CG	638.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr19	48253579	rs3745754	A	G	3739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-1.092;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:394,228:0.37:622
chr19	48254707	rs113310396	T	C	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:52,93:0.64:145
chr19	48257947	rs10403946	C	T	2859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=-1.729;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:266,168:0.39:434
chr19	48258551	rs10406879	T	C	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.451;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:281,102:0.27:383
chr19	48258578	rs10405135	A	G	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.277;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:301,107:0.26:408
chr19	48258717	rs1804994	A	G	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr19	48258826	rs10411523	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr19	48259272	rs10412077	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr19	48260079	rs889142	T	C	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr19	48260425	rs10420202	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr19	48282077	rs111841672	C	CGCAGCGG	3648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=60.85;MQRankSum=6.645;QD=12.67;ReadPosRankSum=2.501;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:181,107:0.37:288
chr19	48282172	rs1862485	T	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:116,49:0.30:165
chr19	48305651	rs62130758	G	A	2699.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:176,79:0.31:255
chr19	48305674	rs78381908	T	C	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:201,74:0.27:275
chr19	48321645	.	C	CTCCA,CTCCATCCA,CCA	1338.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=33;set=Intersection	GT:AF:DP	1/2:0.81,0.19:27
chr19	48342796	rs61748445	G	A	6980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=2.021;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:549,378:0.41:927
chr19	48363390	rs200234544	C	A	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=46.57;MQRankSum=-0.866;QD=12.98;ReadPosRankSum=0.725;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr19	48377798	rs373194922	G	GA	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=0.819;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	48382480	rs2547238	G	C	2319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.391;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:114,121:0.51:235
chr19	48389425	rs11083907	A	G	8089.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	48479850	rs374493501	AAAAC	A	32.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=0.702;SOR=1.678;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr19	48479852	rs372341553	AAC	A	186.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=6.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=2.556;SOR=1.784;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr19	48479854	rs10404937	C	A	44.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=14.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-2.399;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr19	48484150	rs10422554	G	A	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	48495128	rs11671612	T	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	48495304	rs60213124	G	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:60,48:0.44:108
chr19	48511888	rs16982100	T	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr19	48519241	rs3745751	C	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:73,35:0.32:108
chr19	48522869	rs3815908	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.10;ReadPosRankSum=1.345;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	48522882	rs10422382	A	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.47;ReadPosRankSum=0.489;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr19	48525379	rs11671666	T	C	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:67,88:0.57:155
chr19	48525507	rs2303690	G	A	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:177,92:0.34:269
chr19	48525555	rs6509358	G	A	1650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=1.222;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:221,105:0.32:326
chr19	48533741	rs35341698	T	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr19	48533856	rs35063174	A	G	3422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-1.143;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:105,161:0.61:266
chr19	48537585	rs3745746	A	G	6748.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:196,322:0.62:518
chr19	48537777	rs35163057	GT	G	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=1.609;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr19	48543774	rs8102084	C	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr19	48543862	rs8105198	G	A	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	48543923	rs12982629	C	A	3104.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:70,148:0.68:218
chr19	48544753	rs3745745	G	A	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	48551546	rs9226	A	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr19	48551702	rs11564672	C	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr19	48558003	rs744399	A	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	48558286	rs2307281	G	A	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr19	48565468	rs4802425	G	T	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr19	48571072	rs11564620	T	G	808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-2.829;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:97,51:0.34:148
chr19	48581142	rs1019786	C	T	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr19	48581253	rs1019785	C	G	55.78	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr19	48598823	rs156631	A	G	1595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=2.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.604;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:129,86:0.40:215
chr19	48598916	rs156632	A	G	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	48601350	rs251685	T	C	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr19	48601454	rs251684	T	C	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:81,151:0.65:232
chr19	48601483	rs115349574	G	C	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:153,83:0.35:236
chr19	48601528	rs251683	G	T	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:71,106:0.60:177
chr19	48601593	rs11432234	A	AT	476.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr19	48602933	rs2307282	T	C	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr19	48608598	rs2307279	C	G	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-0.739;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:98,39:0.28:137
chr19	48608891	rs1653555	T	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr19	48609715	rs380359	C	T	2181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=-2.000;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:193,121:0.39:314
chr19	48609938	rs11564518	C	T	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr19	48613602	rs138934663	CA	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.40;ReadPosRankSum=1.742;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	48613788	.	T	TGCTCCGGAATCCGGTGCGGAGGCTTGGGCTCCGGAATCCGGTGCGGAGGCTTGG	606.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=15.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=-0.492;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr19	48621036	rs13436	C	G	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:236,123:0.34:359
chr19	48622427	rs20581	A	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:131,71:0.35:202
chr19	48622483	rs156647	A	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:251,108:0.30:359
chr19	48622545	rs274883	A	G	1752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-4.085;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:309,120:0.28:429
chr19	48624625	rs153023	C	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:148,105:0.42:253
chr19	48626604	rs3731007	G	A	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:136,86:0.39:222
chr19	48630700	rs61230848	GCC	G	595.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr19	48634319	rs392891	T	A	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-0.788;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:76,65:0.46:141
chr19	48640234	rs2288880	C	G	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:302,120:0.28:422
chr19	48643124	rs2304136	T	C	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:122,78:0.39:200
chr19	48646883	rs2288878	T	C	2654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-1.620;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:318,159:0.33:477
chr19	48646993	rs415465	C	T	12061.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr19	48668914	rs439132	T	C	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=0.370;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:198,104:0.34:302
chr19	48689919	rs148133656	G	A	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.798;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:103,46:0.31:149
chr19	48690906	rs10416739	G	A	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.07;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	48692832	rs10418095	C	A	616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.290;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr19	48693569	rs115738086	T	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	48693928	rs57930203	C	G	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr19	48697808	rs34897645	TGG	T	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr19	48697961	rs12973411	C	T	1737.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:83,89:0.52:172
chr19	48699174	rs61734672	G	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=6.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.569;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:120,44:0.27:164
chr19	48707581	rs1965759	G	A	3656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.54;ReadPosRankSum=-1.248;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:56,93:0.62:149
chr19	48707583	rs1965758	G	A	3656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.88;ReadPosRankSum=-1.329;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:56,91:0.62:147
chr19	48709635	rs8110489	G	A	5661.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:193,272:0.58:465
chr19	48715153	rs3745718	T	C	4640.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:123,223:0.64:346
chr19	48715269	rs2008521	T	C	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr19	48744345	rs16981853	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr19	48788904	rs140236127	GGAAAGAAA	G	994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.231;QD=21.62;ReadPosRankSum=-1.129;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr19	48800333	rs74925056	G	A	3956.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:373,222:0.37:595
chr19	48800338	rs7252988	A	G	8448.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:228,402:0.64:630
chr19	48800914	rs35461177	G	A	5214.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:161,252:0.61:413
chr19	48807401	rs56177753	C	T	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,63:0.72:88
chr19	48823545	rs8107712	G	A	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.05;ReadPosRankSum=0.049;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:24,78:0.76:102
chr19	48830286	rs10415654	T	A	1922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=0.977;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:54,95:0.64:149
chr19	48832554	rs8102349	A	G	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:63,100:0.61:163
chr19	48836673	rs3826828	G	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:55,78:0.59:133
chr19	48845777	rs4275952	G	A	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:29,66:0.69:95
chr19	48846689	rs142584350	T	C	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:66,112:0.63:178
chr19	48848702	.	CA	TA	520	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=3;HapScore=4;MGOF=6;MMLQ=26;MQ=60.0;NF=0,4;NR=6,6;PP=453,520;QD=76.8333333333;SC=CAGATACTTTCATTTATTTAT;SbPval=1.0;Source=Platypus;TC=16;TCF=1;TCR=15;TR=6,10;WE=48848710;WS=48848692;set=Platypus	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	48848702	.	CA	CATTTATTTA	520	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=3;HapScore=4;MGOF=6;MMLQ=26;MQ=60.0;NF=0,4;NR=6,6;PP=453,520;QD=76.8333333333;SC=CAGATACTTTCATTTATTTAT;SbPval=1.0;Source=Platypus;TC=16;TCF=1;TCR=15;TR=6,10;WE=48848710;WS=48848692;set=Platypus	GT:AD:AF:DP	0/1:10,6:0.38:16
chr19	48848702	rs17361438	C	T,CATTTATTT	902.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=30.09;SOR=1.536;set=HC	GT:AD:AF:DP	1/2:0,18,12:0.60,0.40:30
chr19	48848747	.	C	T	272.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	48863386	rs438767	C	T	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	48876661	rs2569713	A	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr19	48893675	rs276701	C	T	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=3.996;QD=4.15;ReadPosRankSum=-1.083;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:129,50:0.28:179
chr19	48893802	.	AAG	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.085;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:96,15:0.14:111
chr19	48908631	rs34833452	AG	A	1394.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:137,61:0.31:198
chr19	48922421	.	G	A	758.77	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr19	48922772	rs11302654	CT	C	1254.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.303;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.253;MLEAC=2;MLEAF=1.000;MQ=60.50;MQRankSum=1.031;QD=12.30;ReadPosRankSum=1.593;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:12,90:0.88:102
chr19	48923101	rs276709	C	A	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr19	48924963	rs1654671	G	A	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	48945880	rs62130268	T	C	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	48946325	rs111420822	T	C	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.16;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	48946405	rs112893228	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	48949286	rs1643487	G	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	48949764	rs3760795	G	A	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:115,193:0.63:308
chr19	48949766	rs929743	C	G	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:185,110:0.37:295
chr19	48953817	rs181786064	G	T	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:106,139:0.57:245
chr19	48954571	rs1799274	A	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	48956329	rs77441781	C	T	6412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=2.671;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:210,312:0.60:522
chr19	48972740	rs8106937	T	C	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=0.165;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr19	48972890	rs116172436	C	T	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:90,112:0.55:202
chr19	48975746	rs2287658	C	T	5376.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:94,246:0.72:340
chr19	48975807	rs79525710	C	T	5352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.417;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:144,259:0.64:403
chr19	48976497	rs56297411	T	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=-0.561;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:12,29:0.71:41
chr19	48977019	rs1799258	C	T	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	48977382	rs28433711	T	C	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:107,132:0.55:239
chr19	48977479	rs61748773	C	T	6401.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:238,314:0.57:552
chr19	48977701	rs73942287	C	T	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:85,150:0.64:235
chr19	48978325	rs11083939	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,54:0.64:85
chr19	48979186	rs12327611	C	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr19	48981869	rs11882635	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr19	49002058	.	CG	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-0.857;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr19	49090368	rs34482710	T	TA	1644.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	49096065	rs2302948	C	T	13086.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr19	49102782	rs10410524	G	A	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	49106995	rs3745728	G	A	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	49113029	rs2617803	G	C	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	49113161	rs187118641	C	T	3587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=0.147;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:423,218:0.34:641
chr19	49114236	rs454715	T	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	49116076	rs2617801	C	G	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	49116134	rs2617800	T	G	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	49116359	rs447802	T	C	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr19	49116438	rs376524	A	G	10917.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr19	49116555	rs368654	A	G	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.104;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	49119900	rs138568775	C	CCAGCACAGCACAGCA	11059.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.47;MQRankSum=-0.437;QD=28.29;ReadPosRankSum=-1.855;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:11,380:0.97:391
chr19	49120434	rs369880	C	T	18141.77	.	AC=2;AF=1.00;AN=2;DB;DP=718;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,691:1.00:691
chr19	49122248	rs3094287	T	C	6811.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	49123875	rs11407052	T	TA	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=0.087;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:15,41:0.73:56
chr19	49131764	rs34630951	A	AAG	10644.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr19	49132634	rs3745733	G	A	15158.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr19	49142369	.	A	C	1217.77	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:31,57:0.65:88
chr19	49164952	rs281392	A	G	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	49166875	rs371690	G	A	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	49168182	rs373002	T	C	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	49183705	rs3826846	G	A	12284.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr19	49206603	rs281377	C	T	9986.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	49216926	rs281384	A	G	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	49217261	rs281385	A	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr19	49217305	rs281386	A	G	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	49217520	rs281387	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	49217605	rs281388	T	G	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	49228059	rs34354498	C	T	5602.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:233,278:0.54:511
chr19	49232966	.	CTT	C	433.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=-0.696;SOR=0.346;set=HC	GT:AD:AF:DP	1/1:5,20:0.80:25
chr19	49244219	rs2307018	CG	AA	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	49246866	rs838147	A	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	49247601	rs11672046	C	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	49247693	rs8108136	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	49247786	rs8108468	G	A	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	49247900	rs8111288	G	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	49248640	rs12982115	A	G	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	49248730	rs838145	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	49253389	rs4015	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr19	49254573	rs838137	T	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:29,65:0.69:94
chr19	49259529	rs838133	A	G	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	49260101	rs490942	C	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.234;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:48,32:0.40:80
chr19	49261368	rs739320	T	C	16754.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=1.077;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:2,645:1.00:647
chr19	49299533	rs557106	A	G	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	49300605	rs526744	T	C	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	49303352	rs145585685	G	T	3836.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:482,226:0.32:708
chr19	49317098	rs78535883	C	T	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr19	49336014	.	G	GT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.210;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:73,26:0.26:99
chr19	49363672	rs33993078	G	C	11592.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	49377130	.	G	A	694.77	.	AC=1;AF=0.500;AN=2;DP=145;set=Intersection	GT:AD:AF:DP	0/1:95,41:0.30:136
chr19	49378180	.	AT	A	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=3.599;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.947;QD=1.83;ReadPosRankSum=-0.483;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:112,46:0.29:158
chr19	49401205	rs60572211	C	CTTAT	2130.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr19	49416456	rs2387579	G	A	9966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.135;QD=13.18;ReadPosRankSum=2.523;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:280,476:0.63:756
chr19	49416554	rs5828369	CA	C	4019.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	49416936	rs746075	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	49421829	rs2287834	A	G	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:52,110:0.68:162
chr19	49421903	rs2287835	A	G	2167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.389;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:279,134:0.32:413
chr19	49421966	rs2287836	T	C	7790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=1.500;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:214,367:0.63:581
chr19	49424354	rs12979307	C	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr19	49424381	rs12979328	C	A	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:49,121:0.71:170
chr19	49424925	rs11671777	C	T	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr19	49425772	rs1532704	T	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr19	49437123	rs73063547	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:84,51:0.38:135
chr19	49445833	rs7246241	C	T	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=0.812;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:187,98:0.34:285
chr19	49447577	rs79545002	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr19	49447713	rs3765148	G	A	4005.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:279,217:0.44:496
chr19	49458262	rs4645881	C	T	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	49459104	rs1805419	A	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	49464507	.	C	CT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.429;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.884;QD=1.09;ReadPosRankSum=-0.472;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr19	49464971	rs704243	G	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	49469087	rs2230267	T	C	4870.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:154,231:0.60:385
chr19	49474027	rs2270938	A	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,37:0.52:71
chr19	49485548	rs5464	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:69,41:0.37:110
chr19	49485758	rs2270937	C	T	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	49513273	rs1062708	C	T	11871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=972;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=0.543;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:386,577:0.60:963
chr19	49513331	rs117752118	C	T	7801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-0.962;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:252,382:0.60:634
chr19	49513349	rs2287760	C	G	6525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.739;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:225,315:0.58:540
chr19	49514078	rs139929899	C	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr19	49518484	rs753307	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:58,94:0.62:152
chr19	49518575	rs753308	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	49519058	rs749776	T	C	5099.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:147,240:0.62:387
chr19	49519230	rs2013039	T	G	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:47,81:0.63:128
chr19	49519466	rs1056917	A	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr19	49519785	rs140502544	CT	C	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=5.659;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-3.826;QD=6.79;ReadPosRankSum=-0.454;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr19	49519793	rs2387588	A	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.916;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.761;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-4.112;QD=6.85;ReadPosRankSum=-2.234;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr19	49519855	rs1056914	T	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr19	49519873	rs6521	G	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,38:0.40:95
chr19	49519997	rs4002462	A	G	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr19	49520315	rs2387589	T	C	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:54,99:0.65:153
chr19	49520372	rs3752210	A	T	3263.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:102,160:0.61:262
chr19	49520502	rs1960072	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr19	49522106	rs8108340	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-0.592;QD=11.56;ReadPosRankSum=-1.008;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	49528937	rs4802537	T	C	4372.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:106,208:0.66:314
chr19	49529379	rs7255292	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	49529404	rs2387592	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr19	49540093	rs10853805	A	C	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:84,59:0.41:143
chr19	49542078	rs4002456	A	G	4973.77	.	AC=1;AF=0.500;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	0/1:532,296:0.36:828
chr19	49558678	rs35000456	T	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-7.605;QD=1.87;ReadPosRankSum=0.120;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:120,30:0.20:150
chr19	49558690	rs55995744	T	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:113,29:0.20:142
chr19	49558729	rs12461085	G	C	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-5.916;QD=3.37;ReadPosRankSum=3.789;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:90,31:0.26:121
chr19	49559329	rs3810179	G	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:60,42:0.41:102
chr19	49560461	rs3810182	G	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=1.053;QD=5.22;ReadPosRankSum=-1.840;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:44,23:0.34:67
chr19	49560521	rs3810183	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr19	49605530	rs10419811	A	G	6312.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:2,243:0.99:245
chr19	49621964	rs2232003	T	C	17383.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,670:1.00:670
chr19	49632079	rs4802565	C	A	14628.77	.	AC=1;AF=0.500;AN=2;DB;DP=1193;set=Intersection	GT:AD:AF:DP	0/1:464,720:0.61:1184
chr19	49632309	rs4802566	T	C	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:65,112:0.63:177
chr19	49632500	rs4802567	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr19	49632772	rs1559155	C	T	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-0.121;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:26,45:0.63:71
chr19	49636633	rs2287761	G	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr19	49638106	.	C	T	3833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DP=322;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.253;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:120,188:0.61:308
chr19	49638956	rs745124	C	G	5813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=0.862;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:164,280:0.63:444
chr19	49640002	rs2303053	G	T	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:68,47:0.41:115
chr19	49643404	rs3764624	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=0.901;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	49644593	rs7250958	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr19	49644840	rs112961847	C	CGTGT	2318.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:103,68:0.40:171
chr19	49644858	rs147872140	A	AGT	624.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr19	49645176	rs10417260	C	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:142,66:0.32:208
chr19	49645194	rs113859565	A	ATG	2111.73	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:198,80:0.29:278
chr19	49646006	rs4545921	A	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	49649051	rs3764625	T	G	8439.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr19	49651790	rs4802576	G	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	49652128	rs112505587	GT	G	3987.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	49652130	rs116573491	G	A	3947.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	49654421	rs2278004	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr19	49655174	rs1423520	A	T	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	49657710	rs66501117	ACAT	A	4042.73	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:142,123:0.46:265
chr19	49657889	rs147238387	T	TTCC	1855.73	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:153,104:0.40:257
chr19	49658209	rs3745297	A	C	3114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.495;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=1.138;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:376,182:0.33:558
chr19	49658367	rs3745298	C	T	3287.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:330,186:0.36:516
chr19	49658390	rs3745299	T	C	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:256,154:0.38:410
chr19	49661547	rs11882563	A	G	5295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.416;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:191,265:0.58:456
chr19	49661582	rs3760664	T	C	6705.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,255:0.99:257
chr19	49685708	.	C	CCCAT	1448.73	.	AC=1;AF=0.500;AN=2;DP=202;set=Intersection	GT:AD:AF:DP	0/1:104,48:0.32:152
chr19	49703401	rs1175806	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr19	49703764	rs10403114	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:156,88:0.36:244
chr19	49705116	rs11353757	CA	C	487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.388;QD=6.33;ReadPosRankSum=-0.848;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr19	49838891	rs354020	C	A	6209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=1.222;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:589,351:0.37:940
chr19	49839015	rs354021	T	C	4178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=0.651;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:471,248:0.34:719
chr19	49841054	rs354026	G	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:57,36:0.39:93
chr19	49842824	rs164820	G	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr19	49846398	rs30003	T	C	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:71,104:0.59:175
chr19	49851941	rs254661	G	A	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:55,93:0.63:148
chr19	49863041	rs3745306	C	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr19	49867913	rs919364	G	A	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:66,170:0.72:236
chr19	49868959	rs2303758	G	T	5843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.210;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=0.300;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:177,271:0.60:448
chr19	49894027	rs61018355	T	TC	4284.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	49894028	rs57104627	T	C	4293.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	49894152	rs7256629	C	T	4836.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	49894217	rs7256984	G	T	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	49899076	rs10405154	G	A	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr19	49900877	rs9304688	A	G	2456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-0.559;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:62,115:0.65:177
chr19	49901125	rs12977735	C	T	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr19	49901318	rs10421748	T	C	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:93,177:0.66:270
chr19	49901484	rs12980364	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.32;ReadPosRankSum=-1.318;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr19	49902990	rs9807898	A	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr19	49903008	rs8110789	G	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	49910119	rs117030842	G	A	2845.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:96,142:0.60:238
chr19	49920805	rs17206868	A	G	5936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.634;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=2.991;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:172,277:0.62:449
chr19	49925667	rs12974629	T	G	2989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.467;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:128,154:0.55:282
chr19	49930721	rs4802605	T	C	14277.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr19	49935927	rs5828394	A	AG	3103.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	49939719	rs2946848	T	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,25:0.32:78
chr19	49940131	rs3826718	G	C	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	49944730	rs58045148	CA	C	3144.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr19	49949589	rs1043263	A	T	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=0.673;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:116,80:0.41:196
chr19	49949652	rs7462	G	A	5078.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:137,242:0.64:379
chr19	49950298	rs13394	C	T	14131.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr19	49950356	rs12443	C	G	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	49950413	rs2335090	C	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr19	49953051	.	CTTTTTT	C	513.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.70;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	49954282	rs68029391	CTT	C	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=0.813;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr19	49954356	rs6509432	G	A	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	49954803	rs2293013	C	T	23712.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,535:1.00:535
chr19	49954807	rs2293012	T	G	23928.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,537:1.00:537
chr19	49955016	rs2293011	G	T	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	49956460	rs11267495	GTAGCCCCACCCCATTCCCAT	G	1039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.436;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=7.923;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.847;QD=7.03;ReadPosRankSum=-0.405;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:114,34:0.23:148
chr19	49956690	rs3760670	C	T	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:228,139:0.38:367
chr19	49962892	rs62128062	G	A	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	49963971	.	A	ATT	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.436;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=8.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=0.615;SOR=0.043;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr19	49963987	rs11668181	C	T	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=-1.918;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr19	49964977	rs1320303	C	G	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	49965131	rs76844851	GG	AC	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;JOINED;set=Intersection	GT:AD:AF:DP	0/1:66,39:0.37:105
chr19	49965173	rs7259560	A	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr19	49965358	rs191108911	G	A	2138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.080;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:143,111:0.44:254
chr19	49967680	rs2293009	G	A	4869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=740;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=1.732;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:457,278:0.38:735
chr19	49967808	rs34601909	C	T	8316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.116;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=2.577;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.358;QD=14.22;ReadPosRankSum=2.551;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:205,380:0.65:585
chr19	49967981	rs11558188	T	G	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:146,271:0.65:417
chr19	49969085	rs10853810	C	T	5545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-1.382;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:200,276:0.58:476
chr19	49969310	rs2914668	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	49971596	rs11879863	C	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr19	49973784	rs1055637	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=1.150;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	49978936	rs7251338	G	C	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=-0.024;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:103,63:0.38:166
chr19	49979107	rs61254172	CT	C	1289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.293;QD=4.42;ReadPosRankSum=-0.978;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:183,109:0.37:292
chr19	49979893	rs3826717	A	G	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=5.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.995;SOR=1.242;set=HC	GT:AD:AF:DP	0/1:114,31:0.21:145
chr19	49983673	rs1042120	C	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:88,56:0.39:144
chr19	49990843	rs2271951	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	49993535	rs1064257	C	G	1168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.316;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:60,56:0.48:116
chr19	49994470	rs59192944	T	A	5143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.864;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:302,152:0.33:454
chr19	49994476	rs56974957	T	C	2162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-1.427;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:294,137:0.32:431
chr19	49999647	rs17555056	C	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:205,80:0.28:285
chr19	49999880	rs4802613	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	50002607	rs739349	C	T	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.954;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.952;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr19	50002686	rs756628	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:144,58:0.29:202
chr19	50016748	rs59774409	C	T	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.002;QD=7.81;ReadPosRankSum=-1.977;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr19	50017724	rs2878342	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:54,23:0.30:77
chr19	50028040	rs3810194	T	C	3865.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:355,208:0.37:563
chr19	50028163	rs1132990	A	G	6681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=949;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=0.999;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:577,366:0.39:943
chr19	50028306	rs71724821	CCTGCTG	C	1036.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=5.109;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.904;QD=3.70;ReadPosRankSum=2.914;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:212,68:0.24:280
chr19	50028620	rs73582446	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:53,20:0.27:73
chr19	50037384	rs149488043	G	GC	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr19	50037422	rs111817044	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr19	50037446	rs73582463	C	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr19	50040152	rs73582470	T	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=1.011;QD=5.38;ReadPosRankSum=0.223;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr19	50040271	rs112241191	GA	G	4720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.909;QD=11.77;ReadPosRankSum=0.660;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:251,150:0.37:401
chr19	50042371	rs8105626	T	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.264;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:56,31:0.36:87
chr19	50042535	rs4560020	A	G	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:127,59:0.32:186
chr19	50045878	rs34654230	C	T	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-1.974;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:123,60:0.33:183
chr19	50045916	rs34459162	T	C	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=1.703;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:178,98:0.36:276
chr19	50046036	rs56084109	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:123,72:0.37:195
chr19	50046226	rs112443336	C	CAG	617.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr19	50046239	rs45482295	A	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr19	50046365	rs3187346	T	C	2636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.868;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=-0.355;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:240,154:0.39:394
chr19	50046437	rs1129459	C	T	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:169,114:0.40:283
chr19	50046473	rs1129460	A	C	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:125,83:0.40:208
chr19	50093454	rs4429389	A	T	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	50140068	rs1368464	C	T	11517.77	.	AC=1;AF=0.500;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	0/1:440,571:0.56:1011
chr19	50140092	rs1865077	G	A	10802.77	.	AC=1;AF=0.500;AN=2;DB;DP=943;set=Intersection	GT:AD:AF:DP	0/1:405,526:0.56:931
chr19	50140209	rs1368463	C	T	9184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=0.174;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:273,434:0.61:707
chr19	50140246	rs1865076	C	A	12017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=1004;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=1.317;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:411,586:0.59:997
chr19	50149269	rs34074594	G	A	7128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=-0.028;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:179,339:0.65:518
chr19	50154904	rs7251334	A	C	2373.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.311;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.098;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.74;ReadPosRankSum=-0.806;SOR=0.319;set=HC	GT:AD:AF:DP	1/1:1,99:0.99:100
chr19	50155361	rs3833232	GCCGCTC	G	705.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.76;ReadPosRankSum=1.962;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	50156896	rs10401743	T	C	8848.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	50162909	rs7251	C	G	2350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-0.681;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:70,114:0.62:184
chr19	50168174	rs34739574	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-1.381;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr19	50183980	rs1433102	TT	CC	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	50187079	rs7260179	A	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:44,69:0.61:113
chr19	50187111	rs3816047	C	G	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:66,87:0.57:153
chr19	50195770	rs10423579	TT	CG	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	50204843	rs12973248	G	A	9287.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr19	50205028	rs12973329	C	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	50208180	rs12984650	G	T	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	50209095	rs7249356	T	G	4064.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=1.172;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:2,158:0.99:160
chr19	50209653	rs12978911	C	T	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	50216118	rs56405217	T	TG	9570.73	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	50250872	rs8109529	G	A	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	50265549	rs3745477	T	G	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	50304336	rs1003424	A	G	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:71,85:0.54:156
chr19	50304392	rs10421561	T	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr19	50304439	rs10421754	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr19	50305688	rs2159984	G	C	10467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;ClippingRankSum=0.000;DB;DP=885;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=-0.482;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:356,512:0.59:868
chr19	50306198	rs28736735	G	T	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr19	50308893	rs8101959	T	C	4429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=1.779;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:158,220:0.58:378
chr19	50312653	rs2305921	C	T	6804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=533;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=1.463;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:193,324:0.63:517
chr19	50314458	rs55810357	GA	G	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-1.545;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:18,32:0.64:50
chr19	50315423	rs8104825	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr19	50315698	rs2305919	A	C	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr19	50315773	rs2305918	T	A	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:73,105:0.59:178
chr19	50322611	.	T	TGATGGCTTGGGTGGTTGGGGTCCCTGTAAGGGGCCGTGCATGAGG	2319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.699;QD=13.89;ReadPosRankSum=-1.137;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:98,69:0.41:167
chr19	50322619	.	TG	T	2963	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=4;HapScore=1;MGOF=11;MMLQ=28;MQ=60.15;NF=0;NR=33;PP=2963;QD=20;SC=AGTGATGGCTTGGGGTGGTTG;SbPval=1.0;Source=Platypus;TC=90;TCF=1;TCR=89;TR=33;WE=50322665;WS=50322609;set=Platypus	GT:AD:AF:DP	0/1:57,33:0.37:90
chr19	50331678	rs5828413	CT	C	1390.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:94,48:0.34:142
chr19	50335510	rs3745480	T	C	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:125,78:0.38:203
chr19	50338453	rs752522	C	T	7535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=1.194;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:221,364:0.62:585
chr19	50342111	rs10403127	G	A	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:53,101:0.66:154
chr19	50354211	rs7260222	C	T	12167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=1.419;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:280,572:0.67:852
chr19	50358133	rs75478119	T	G	7956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=-1.506;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:230,375:0.62:605
chr19	50358170	rs1290657	T	C	31118.77	.	AC=2;AF=1.00;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	1/1:0,827:1.00:827
chr19	50358183	rs2278836	C	A	12158.77	.	AC=1;AF=0.500;AN=2;DB;DP=910;set=Intersection	GT:AD:AF:DP	0/1:327,578:0.64:905
chr19	50363175	rs1290646	A	G	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr19	50368361	rs1290649	T	A	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr19	50375035	rs2290774	T	C	4674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=2.139;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:128,223:0.64:351
chr19	50375242	rs2290775	C	T	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr19	50380858	rs731826	T	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr19	50383591	rs8109661	A	G	13974.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,548:1.00:548
chr19	50383636	rs3745486	T	C	4835.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:160,234:0.59:394
chr19	50386340	rs746738	T	C	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:153,195:0.56:348
chr19	50392014	rs11668716	T	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr19	50394193	rs56091826	GC	G	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=24.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.695;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:60,20:0.25:80
chr19	50394203	rs66537733	CCT	C	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=24.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=3.283;SOR=2.794;set=HC	GT:AD:AF:DP	0/1:54,39:0.42:93
chr19	50399384	rs3840921	G	GC	2325.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:79,88:0.53:167
chr19	50404939	rs1290754	T	G	5353.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:187,260:0.58:447
chr19	50411742	rs892028	A	G	19592.77	.	AC=2;AF=1.00;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	1/1:2,772:1.00:774
chr19	50412217	rs1062798	C	G	3332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=7.08;ReadPosRankSum=1.420;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:285,186:0.39:471
chr19	50412417	rs999583	G	A	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	50434021	rs11554772	C	T	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr19	50435747	rs283525	T	C	16054.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,632:1.00:632
chr19	50435862	rs283526	C	T	2591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=5.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=1.727;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:194,131:0.40:325
chr19	50435921	rs201354210	C	T	5313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=4.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=1.575;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:122,245:0.67:367
chr19	50435998	rs34877198	C	T	3908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=0.254;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:376,218:0.37:594
chr19	50462244	rs1811375	G	A	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:208,115:0.36:323
chr19	50474653	.	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.28;MQRankSum=-4.084;QD=0.95;ReadPosRankSum=-4.003;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr19	50496281	rs113770287	G	GAC	1582.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	50542359	rs2278283	G	A	4472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=-0.669;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:164,216:0.57:380
chr19	50657786	rs66651303	AG	A	14563.73	.	AC=2;AF=1.00;AN=2;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=34.03;SOR=1.113;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr19	50665984	rs73932425	C	G	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr19	50666389	rs61742305	G	A	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:60,112:0.65:172
chr19	50720793	rs55934167	C	T	16533.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr19	50720793	.	CGG	TGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=26;MQ=60.0;NF=135;NR=91;PP=2947;QD=20;SC=GTGCAGTGCACGGCCTGCTCA;SbPval=0.53;Source=Platypus;TC=236;TCF=140;TCR=96;TR=226;WE=50720803;WS=50720783;set=Platypus	GT:AD:AF:DP	1/1:10,226:0.96:236
chr19	50720795	rs10412634	G	A	16533.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	50721074	rs4802666	G	A	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	50726459	rs654877	T	C	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:434,288:0.40:722
chr19	50726570	rs4801822	G	A	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:202,129:0.39:331
chr19	50727510	rs56354891	T	C	1537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=3.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-2.252;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:178,89:0.33:267
chr19	50735340	rs11666328	C	T	9777.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:1,385:1.00:386
chr19	50760716	rs378811	C	G	10374.77	.	AC=1;AF=0.500;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	0/1:356,506:0.59:862
chr19	50762418	rs1651553	A	G	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:218,117:0.35:335
chr19	50763889	rs12981413	C	T	5043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.087;QD=5.15;ReadPosRankSum=2.782;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:671,309:0.32:980
chr19	50764017	rs146099002	T	TGC	1525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.966;QD=5.47;ReadPosRankSum=0.084;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:183,96:0.34:279
chr19	50764079	rs140241247	A	AGT	593.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr19	50766707	rs1529492	T	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,34:0.35:96
chr19	50771609	rs3745504	G	A	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=0.688;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:188,111:0.37:299
chr19	50771635	rs930086	T	C	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=0.333;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:212,125:0.37:337
chr19	50775742	rs1651543	A	G	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	50779151	rs8108435	C	T	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,57:0.48:119
chr19	50779988	rs788337	A	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:84,50:0.37:134
chr19	50780186	rs7259185	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr19	50794480	rs73058373	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr19	50796352	rs651044	C	A	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	50796905	rs3745509	G	A	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	50796960	rs3745510	C	T	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	50797131	rs4801826	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	50805138	rs3826772	C	T	5581.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	50812221	rs889002	A	G	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	50813169	rs12978083	A	C	4982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=1.417;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:224,253:0.53:477
chr19	50813263	rs627491	T	G	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.19;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	50818252	rs115192757	G	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-0.032;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr19	50832152	rs375912738	T	C	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	50837859	rs56849250	C	CA	618.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=20.338;MLEAC=1;MLEAF=0.500;MQ=60.96;MQRankSum=1.418;QD=14.73;ReadPosRankSum=0.989;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:13,29:0.69:42
chr19	50863023	rs638294	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:124,54:0.30:178
chr19	50865535	rs676314	A	G	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:194,113:0.37:307
chr19	50865617	.	C	T	1539.77	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:43,72:0.63:115
chr19	50868754	rs1274517	A	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr19	50880741	rs2695121	T	C	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:121,46:0.28:167
chr19	50881326	rs28514894	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr19	50881822	rs34296657	A	ACAG	3558.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:122,94:0.44:216
chr19	50882169	rs2248949	A	G	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-1.357;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:93,47:0.34:140
chr19	50882172	rs41432149	C	T	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-1.831;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:84,43:0.34:127
chr19	50882918	rs2303045	G	C	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.58;ReadPosRankSum=0.548;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr19	50885201	rs2303044	C	T	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:110,67:0.38:177
chr19	50902196	rs3218772	C	T	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=1.094;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:36,31:0.46:67
chr19	50909389	rs1673041	T	G	3938.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	50919797	rs3218776	C	T	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	50922370	rs2244095	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	50926264	rs1673030	TG	CC	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	50926742	rs3745516	A	G	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	50927059	rs76521311	G	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr19	50939867	rs2004423	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:113,42:0.27:155
chr19	50986590	rs139546278	T	TC	764.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr19	51016357	.	C	T	1072.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr19	51052189	rs11880112	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	51128661	rs16986142	T	C	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:350,223:0.39:573
chr19	51128856	rs10426057	A	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:102,59:0.37:161
chr19	51133356	rs10407511	C	G	2631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.382;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:153,140:0.48:293
chr19	51159571	rs4801844	T	G	6721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-0.165;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:247,328:0.57:575
chr19	51161088	rs10404821	C	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	51170706	rs3745521	A	G	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	51171188	rs750578	G	A	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	51191172	rs12975345	A	G	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:187,113:0.38:300
chr19	51200290	rs34959666	G	GC	15955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=1095;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.416;QD=15.63;ReadPosRankSum=2.093;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:407,614:0.60:1021
chr19	51217550	rs3745530	G	A	4521.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:191,228:0.54:419
chr19	51228746	rs13866	C	T	16098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=1366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.862;QD=11.90;ReadPosRankSum=-0.056;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:578,775:0.57:1353
chr19	51228802	rs1053020	T	G	8082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=1.415;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:263,382:0.59:645
chr19	51261829	rs73046516	G	A	8404.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:258,407:0.61:665
chr19	51261951	rs11880363	G	T	14238.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr19	51262056	rs11883166	T	C	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	51262620	rs10424138	A	C	5992.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.05;QD=31.21;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	51262634	rs11880526	G	C	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=0.648;QD=6.35;ReadPosRankSum=-2.070;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:95,54:0.36:149
chr19	51294098	rs145475625	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr19	51321525	rs3212845	G	A	3937.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:133,190:0.59:323
chr19	51321714	rs3212844	A	G	7352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-1.282;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:287,366:0.56:653
chr19	51321813	rs2411334	A	G	15683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.771;QD=24.05;ReadPosRankSum=0.407;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:242,410:0.63:652
chr19	51321827	rs3212842	G	A	8137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.793;QD=12.76;ReadPosRankSum=-0.263;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:245,393:0.62:638
chr19	51321919	rs3212841	C	CCAGCCTTCGCAGGCCACACCCTGAAGCCACTCTCCACCCGCT	2570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.620;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=54.056;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.140;QD=16.17;ReadPosRankSum=-0.882;SOR=3.725;set=HC	GT:AD:AF:DP	0/1:89,70:0.44:159
chr19	51321953	rs3212858	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:39,9:0.19:48
chr19	51322312	rs5519	T	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr19	51323232	rs5517	T	C	6523.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:148,307:0.67:455
chr19	51323378	rs3212830	C	T	11782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=1.594;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:410,570:0.58:980
chr19	51323473	rs5516	C	G	8675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=0.038;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:286,408:0.59:694
chr19	51323501	rs1054713	A	G	6745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=1.579;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:226,327:0.59:553
chr19	51323676	rs5515	C	T	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:73,81:0.53:154
chr19	51323881	rs2659103	T	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=-1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr19	51327063	rs36217621	G	C	4087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.748;QD=13.67;ReadPosRankSum=1.208;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:106,193:0.65:299
chr19	51327163	rs34301743	GCC	G	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.549;QD=15.81;ReadPosRankSum=0.178;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	51329272	rs3212808	T	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr19	51331199	rs142271509	G	GT	1701.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	51331204	.	T	TTG	798	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=4;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=1;NR=18;PP=798;QD=43.3684210526;SC=GCCCTGTTTTTGTTTGTTGTT;SbPval=0.62;Source=Platypus;TC=20;TCF=1;TCR=19;TR=19;WE=51331213;WS=51331194;set=Platypus	GT:AD:AF:DP	1/1:1,19:0.95:20
chr19	51331205	.	G	T	516	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=8;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=6;NR=16;PP=516;QD=25.0350551158;SC=CCCTGTTTTTGTTTGTTGTTG;SbPval=0.6;Source=Platypus;TC=25;TCF=7;TCR=18;TR=22;WE=51331213;WS=51331194;set=Platypus	GT:AD:AF:DP	1/1:3,22:0.88:25
chr19	51331205	rs372866981	G	GT	1701.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	51358333	rs266881	C	A	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:118,79:0.40:197
chr19	51361315	rs12946	C	T	7548.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:213,355:0.62:568
chr19	51361644	rs1810020	A	G	7470.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	51363026	rs2659122	C	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr19	51363398	rs1058205	C	T	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:350,156:0.31:506
chr19	51363448	rs1058274	A	G	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:183,71:0.28:254
chr19	51411636	rs2569527	G	T	6076.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr19	51412666	rs1654552	C	A	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	51413802	rs198969	G	C	5160.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	51452250	rs183854	T	C	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	51455814	rs2739412	A	C	5986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029;ClippingRankSum=0.000;DB;DP=954;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=1.246;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:598,353:0.37:951
chr19	51456005	rs2659093	T	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr19	51462619	.	CTG	CTGTG,C	51.37	.	AC=2,0;AF=1.00,0.00;AN=2;DP=31;set=Intersection	GT:AF:DP	1/1:1.00:3
chr19	51465096	rs1701950	C	G	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:115,72:0.39:187
chr19	51466516	rs1654537	A	G	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.083;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:101,39:0.28:140
chr19	51480671	rs59354651	AGGTT	A	2455.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	51482951	rs148022792	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr19	51482969	rs1701924	C	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr19	51484990	rs1991819	T	C	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr19	51485194	rs1654523	C	T	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	51485622	rs2659067	A	G	8820.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr19	51487067	rs1275221	T	C	5739.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:137,275:0.67:412
chr19	51487175	rs1624358	T	G	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	51503524	rs1701946	T	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:76,51:0.40:127
chr19	51504075	rs1701947	A	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr19	51507020	rs2075802	T	G	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:270,129:0.32:399
chr19	51519364	rs2075688	T	G	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:171,100:0.37:271
chr19	51520487	rs3745535	A	C	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.765;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:97,51:0.34:148
chr19	51522291	rs2304157	G	C	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:90,58:0.39:148
chr19	51530693	rs1474520	G	A	6402.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr19	51535130	rs3745540	A	G	21547.77	.	AC=2;AF=1.00;AN=2;DB;DP=857;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,831:1.00:831
chr19	51535460	rs10635364	T	TCC	1670.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	51537682	rs3865443	C	A	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:49,92:0.65:141
chr19	51537903	rs71185791	G	GA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=2.536;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr19	51563965	rs2569474	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr19	51566943	rs2736433	G	A	2983.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:89,143:0.62:232
chr19	51567176	rs2736431	G	A	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:73,118:0.62:191
chr19	51567990	rs10500306	T	C	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:54,122:0.69:176
chr19	51568029	rs2736434	G	T	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr19	51568066	rs12979090	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr19	51583003	rs6509518	A	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr19	51584743	rs2569489	A	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr19	51584916	rs2569491	G	A	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:119,173:0.59:292
chr19	51584951	rs35287116	T	C	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:106,158:0.60:264
chr19	51585112	rs62114143	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr19	51607507	rs17855403	G	A	4813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=0.941;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:522,280:0.35:802
chr19	51628529	rs2075803	A	G	12742.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr19	51630482	rs2258983	C	A	7287.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr19	51631165	rs867188	C	A	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chr19	51656218	rs273661	G	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	51656454	rs273662	A	T	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:35,90:0.72:125
chr19	51671842	rs118164713	C	A	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=0.399;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:228,120:0.34:348
chr19	51728641	rs2455069	A	G	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:64,122:0.66:186
chr19	51767205	rs6509523	C	T	3171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.122;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-2.477;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:161,164:0.50:325
chr19	51767485	rs875283	A	G	94.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.85;ReadPosRankSum=0.854;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	51815108	.	C	G	350.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.33;MQRankSum=-0.182;QD=20.63;ReadPosRankSum=1.114;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr19	51815243	rs4802779	G	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=1.039;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,18:0.39:46
chr19	51825238	rs34297802	C	T	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:112,105:0.48:217
chr19	51830297	rs117206276	C	T	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:55,93:0.63:148
chr19	51831759	rs61422289	G	GA	1329.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-1.187;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:44,109:0.71:153
chr19	51835892	rs11402251	T	TG	10909.73	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr19	51837171	rs7255306	A	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	51837213	rs7255412	A	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	51837332	rs10418551	A	G	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.17;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	51837344	rs11672414	C	T	1778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-0.313;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:40,82:0.67:122
chr19	51841417	rs34380065	C	T	4398.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:142,217:0.60:359
chr19	51843589	rs6509528	G	T	5593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-2.141;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:155,269:0.63:424
chr19	51843808	rs7259266	C	T	3995.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:92,180:0.66:272
chr19	51844978	rs8105710	G	T	1372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=0.985;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:62,70:0.53:132
chr19	51845371	rs10414211	T	G	1551.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr19	51850235	.	G	T	7922.77	.	AC=1;AF=0.500;AN=2;DP=590;set=Intersection	GT:AD:AF:DP	0/1:206,384:0.65:590
chr19	51850290	rs1130426	G	A	14853.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr19	51850402	rs8112687	T	C	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:84,63:0.43:147
chr19	51853468	rs4802789	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	51856619	rs2004309	T	C	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:63,87:0.58:150
chr19	51856631	rs3889312	G	A	2545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=0.301;QD=22.73;ReadPosRankSum=-1.249;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:48,64:0.57:112
chr19	51856641	rs3889313	G	C	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=0.687;QD=21.38;ReadPosRankSum=-0.016;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:45,47:0.51:92
chr19	51869346	rs3786625	G	A	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.62;ReadPosRankSum=-0.919;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr19	51871195	rs3745403	G	A	21449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=1614;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-1.072;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:573,1016:0.64:1589
chr19	51874950	rs3009	G	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:39,51:0.57:90
chr19	51883727	rs2547318	G	A	5647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=0.186;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:161,272:0.63:433
chr19	51917735	rs1974821	G	A	3908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=1.275;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:102,187:0.65:289
chr19	51918112	rs3810099	A	G	6989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.627;QD=12.35;ReadPosRankSum=-0.036;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:225,341:0.60:566
chr19	51918135	rs1833785	G	T	6065.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:180,291:0.62:471
chr19	51918360	rs61741672	A	G	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-3.376;QD=9.18;ReadPosRankSum=1.556;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr19	51918394	rs35546227	T	G	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:70,78:0.53:148
chr19	51918901	rs112905231	G	A	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr19	51919140	rs3810101	G	A	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=53.67;MQRankSum=1.511;QD=9.89;ReadPosRankSum=0.430;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr19	51919231	rs112584540	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-7.423;QD=2.44;ReadPosRankSum=-2.610;SOR=1.231;set=HC	GT:AD:AF:DP	0/1:67,12:0.15:79
chr19	51919235	rs201089294	T	C	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.353;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.435;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-6.807;QD=1.32;ReadPosRankSum=-0.662;SOR=1.624;set=HC	GT:AD:AF:DP	0/1:67,8:0.11:75
chr19	51919237	rs199590261	C	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.800;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-6.310;QD=1.23;ReadPosRankSum=0.994;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:67,6:0.08:73
chr19	51919243	rs199660336	GG	AC	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.005;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.669;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-6.873;QD=1.45;ReadPosRankSum=0.634;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:64,6:0.09:70
chr19	51919434	rs375392809	GA	G	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.737;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr19	51919507	rs62114257	T	C	14064.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr19	51919949	rs9304711	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr19	51919998	rs61741677	T	C	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:75,111:0.60:186
chr19	51920240	rs112587079	G	T	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:92,106:0.54:198
chr19	51920613	rs1010425	C	T	3389.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:351,193:0.35:544
chr19	51955626	rs36491	A	G	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr19	51957556	rs3829659	T	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr19	51983673	rs61743859	G	A	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:436,231:0.35:667
chr19	51984005	rs7251664	T	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr19	51984656	rs62115071	G	A	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr19	51984725	rs8106673	T	A	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:152,98:0.39:250
chr19	51986547	rs10426247	A	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:96,54:0.36:150
chr19	51988104	rs10414127	C	T	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr19	51988280	rs10414941	G	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-2.708;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:94,35:0.27:129
chr19	51988326	rs10416318	T	C	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.206;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:81,32:0.28:113
chr19	51994813	rs16982733	G	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	51994851	rs16982735	C	G	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	51995046	rs57043266	G	T	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	52000624	rs3752135	T	G	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	52000904	rs2864097	T	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	52002291	rs73051351	A	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	52002317	rs4801871	G	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	52002488	rs968491	C	A	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	52002493	rs59372820	T	A	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	52003090	rs45554634	C	T	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	52003331	rs6509544	G	C	8396.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr19	52004551	rs3810109	C	T	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:2,314:0.99:316
chr19	52004903	rs16982743	G	A	20852.77	.	AC=2;AF=1.00;AN=2;DB;DP=830;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,820:1.00:820
chr19	52031148	rs77020082	T	G	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	52033108	rs74352887	G	A	9295.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr19	52034469	rs1993462	C	T	5531.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	52085291	rs1543923	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr19	52090100	rs45541134	T	C	5924.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:140,281:0.67:421
chr19	52091782	rs1063973	A	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr19	52097261	rs58301181	C	G	9971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=841;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=0.990;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:339,482:0.59:821
chr19	52097401	rs35740364	T	C	8248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DB;DP=1150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=-0.212;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:682,447:0.40:1129
chr19	52097560	rs141848717	G	GA	10564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;ClippingRankSum=0.000;DB;DP=1053;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=11.25;ReadPosRankSum=1.343;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:384,555:0.59:939
chr19	52101918	rs1868947	T	C	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:177,85:0.32:262
chr19	52104489	rs8113451	C	G	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr19	52104560	rs3752127	T	C	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	52104713	rs3752126	G	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=25.83;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	52115645	rs3829655	G	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.945;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr19	52130637	rs1106476	TC	AA	23515.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr19	52132524	.	TAC	T	936.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.526;QD=19.52;ReadPosRankSum=0.201;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:8,40:0.83:48
chr19	52132986	rs200975295	A	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	52208277	rs11382950	G	GC	4598.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	52222552	rs11084112	G	A	6662.77	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:501,362:0.42:863
chr19	52223121	rs7248778	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.461;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr19	52223177	rs148624449	G	C	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=1.099;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:22,75:0.77:97
chr19	52223251	rs59168688	T	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.785;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr19	52223266	rs57088533	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=1.048;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr19	52227137	.	T	TACACACACAC	2207.73	.	AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;QD=63.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr19	52249071	rs5828493	CT	C	80.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	52249211	rs867228	T	G	6180.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	52249672	rs1042229	A	C	9410.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr19	52249947	rs2070745	C	G	8222.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr19	52250216	rs5030878	A	G	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	52327777	.	T	A	7381.77	.	AC=1;AF=0.500;AN=2;DP=626;set=Intersection	GT:AD:AF:DP	0/1:254,356:0.58:610
chr19	52468879	rs143609000	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:67,27:0.29:94
chr19	52505463	rs151263298	C	T	4974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=3.311;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-5.593;QD=12.76;ReadPosRankSum=2.007;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:151,239:0.61:390
chr19	52505534	.	CCTGTAATAACACACTTCTGTTTAATGAAGTCATATTCTTTTGGTGATAGGAAAAGAATGTCAAGGAAGT	C	5228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.989;ClippingRankSum=0.000;DP=530;ExcessHet=3.0103;FS=15.197;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-11.286;QD=11.32;ReadPosRankSum=-0.705;SOR=1.611;set=HC	GT:AD:AF:DP	0/1:315,147:0.32:462
chr19	52520714	rs12976476	G	T	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	52659991	rs1821278	A	G	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:120,88:0.42:208
chr19	52660279	rs1366245	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:80,66:0.45:146
chr19	52660783	rs17696575	A	G	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.781;QD=7.17;ReadPosRankSum=-0.988;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:59,38:0.39:97
chr19	52660826	rs61641512	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr19	52786700	rs372249749	C	CT	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=2.141;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:52,33:0.39:85
chr19	52793261	rs10418171	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr19	52800516	rs67621412	C	A	4901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-0.003;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:138,243:0.64:381
chr19	52803669	rs3217319	CTG	C	9481.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr19	52819067	.	A	AT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=1.224;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:158,32:0.17:190
chr19	52825032	rs13343641	C	T	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=2.873;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:47,40:0.46:87
chr19	52825235	rs8102373	A	G	2598.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:51,115:0.69:166
chr19	52852523	rs321953	T	C	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	52856955	rs1961205	C	T	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:52,102:0.66:154
chr19	52869022	rs2241586	G	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	52869278	rs321937	G	C	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	52869312	rs162120	T	C	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	52869534	rs162119	G	A	8026.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	52870052	rs1054612	C	G	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-1.576;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:159,63:0.28:222
chr19	52873023	rs707312	A	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	52877464	rs35732198	A	AT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.260;QD=3.10;ReadPosRankSum=-2.045;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr19	52877507	rs112064222	C	T	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr19	52882733	rs10445583	T	C	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-1.835;QD=6.10;ReadPosRankSum=-1.589;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:66,39:0.37:105
chr19	52882805	rs10445584	C	T	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=-0.004;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:46,39:0.46:85
chr19	52882824	rs10445585	T	A	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr19	52887145	rs34470614	TA	T	903.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:77,53:0.41:130
chr19	52887246	rs34678014	T	TCAA	1170.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr19	52887427	rs8104808	A	C	5032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.766;QD=14.34;ReadPosRankSum=0.885;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:214,137:0.39:351
chr19	52887437	rs8104812	A	C	5015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.811;QD=13.56;ReadPosRankSum=2.488;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:230,140:0.38:370
chr19	52887904	rs2042913	T	C	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:149,72:0.33:221
chr19	52888210	rs56151179	T	C	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:140,84:0.38:224
chr19	52888245	rs55748277	A	G	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:136,77:0.36:213
chr19	52888620	rs3170100	T	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr19	52893473	rs7253837	A	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	52905067	rs324091	A	C	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	52909303	rs2290745	C	T	14777.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.61;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,577:1.00:577
chr19	52909458	rs2245620	T	G	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	52909989	rs11668956	A	G	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	52917590	rs162124	G	A	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	52917626	rs162123	A	G	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	52920006	rs10664588	C	CTG	8984.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	52937530	rs2560997	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	52938361	rs11084161	C	A	8674.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr19	52938417	rs11084162	A	G	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr19	52938459	rs11084163	A	G	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	52940931	rs1428179	A	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	52941171	rs1428180	T	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	52941540	rs1366257	G	A	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=26.08;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	52941618	rs1366258	A	C	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	52941847	rs1366259	A	T	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	52942159	rs2608497	A	G	9418.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr19	52942445	rs2608498	C	T	22850.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr19	52942495	rs2561001	G	A	21577.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:45,531:0.92:576
chr19	52942734	rs2446079	C	T	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	52954507	rs324104	T	C	7247.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=24.82;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	53075519	rs8104138	G	T	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	53075734	rs3826655	C	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	53077411	rs162832	T	C	8300.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr19	53078863	rs192210211	C	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.80;MQRankSum=0.319;QD=10.78;ReadPosRankSum=0.648;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr19	53085416	rs12975229	G	A	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	53085659	rs366793	C	T	8129.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr19	53085813	rs3745101	T	C	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	53086124	rs373554	C	A	9381.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr19	53086598	rs3745102	G	A	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	53099965	rs2279151	A	G	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.145;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:43,17:0.28:60
chr19	53099975	rs2279152	C	G	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-0.508;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr19	53100585	rs1802617	G	T	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=1.292;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:197,108:0.35:305
chr19	53117531	rs1056185	C	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:69,47:0.41:116
chr19	53117809	rs10406458	C	A	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.275;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:193,66:0.25:259
chr19	53270384	rs1820128	A	G	10153.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr19	53303527	rs8107444	A	G	10610.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr19	53303705	rs10417163	T	G	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:142,194:0.58:336
chr19	53303890	rs57548937	C	G	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:202,136:0.40:338
chr19	53304563	rs13382164	T	C	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-1.349;QD=4.28;ReadPosRankSum=-1.192;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:141,55:0.28:196
chr19	53311395	rs7257656	G	A	10833.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr19	53369486	rs35128688	CAT	C	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=34.87;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	53370013	rs12973227	C	G	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;MQ=60.22;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	53370122	rs71700464	CAAAAAA	C	317.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.94;QD=31.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	53384185	rs6509701	C	T	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:189,149:0.44:338
chr19	53452965	rs3745177	C	T	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:44,53:0.55:97
chr19	53453777	rs8110062	C	T	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:130,191:0.60:321
chr19	53454475	rs33949217	C	CACT	5367.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;MQ=60.22;set=Intersection	GT:AD:AF:DP	0/1:98,136:0.58:234
chr19	53454789	rs12459008	A	T	3789.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:165,191:0.54:356
chr19	53456490	rs66502718	C	CA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=1.566;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr19	53517312	rs370383096	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=49.42;MQRankSum=-2.432;QD=3.95;ReadPosRankSum=1.404;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr19	53518178	rs140876268	C	G	3705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DB;DP=1008;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.09;MQRankSum=-6.126;QD=3.79;ReadPosRankSum=0.734;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:707,272:0.28:979
chr19	53554075	rs1650983	A	G	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-0.481;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:182,112:0.38:294
chr19	53571973	rs182756863	C	T	4928.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:169,235:0.58:404
chr19	53572494	rs11665677	G	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:266,121:0.31:387
chr19	53576465	rs329734	C	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	53576589	rs329733	C	G	11811.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chr19	53577419	rs8105668	G	C	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	53577668	rs167918	C	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr19	53589677	rs329718	C	T	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	53612311	rs4803051	T	C	8367.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr19	53612745	rs1133327	T	C	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	53612757	rs1054485	T	G	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	53618698	rs12609961	C	T	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	53619864	rs71899853	CTCT	C	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	53625645	rs34974523	C	T	2463.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	53644318	rs139863350	C	T	5508.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:162,256:0.61:418
chr19	53645291	rs2195310	T	C	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:202,102:0.34:304
chr19	53651845	rs10694633	T	TTC	829.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:56,23:0.29:79
chr19	53668549	rs10409924	T	G	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	53669273	rs4801959	T	C	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr19	53678924	rs4289099	C	A	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	53706984	rs12610332	G	A	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:265,173:0.39:438
chr19	53707097	rs11084225	T	C	2567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-0.195;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:232,148:0.39:380
chr19	53707289	rs7249771	C	T	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:190,157:0.45:347
chr19	53716190	rs10775558	A	G	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:126,82:0.39:208
chr19	53716278	rs10853858	A	G	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=4.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-1.138;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:192,91:0.32:283
chr19	53716460	rs10853859	A	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr19	53727097	rs36114232	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=1.894;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr19	53727100	rs35443981	T	TTA	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=1.851;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr19	53727282	rs11084227	A	G	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=8.36;ReadPosRankSum=0.359;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:49,41:0.46:90
chr19	53727392	rs10401578	T	C	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr19	53727573	rs12985503	A	G	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:227,118:0.34:345
chr19	53727591	rs10401984	T	C	3909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-6.960;QD=12.49;ReadPosRankSum=-2.535;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:203,110:0.35:313
chr19	53727591	.	TCA	CCG	1944	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=3;HapScore=1;MGOF=10;MMLQ=23;NF=32;NR=34;PP=1944;QD=30.2646647706;SC=GTGATACTTTTCAACTGGCTT;SbPval=0.4;Source=Platypus;TC=170;TCF=76;TCR=94;TR=66;WE=53727601;WS=53727581;set=Platypus	GT:AD:AF:DP	1/0:104,66:0.39:170
chr19	53727593	rs11673594	A	G	3909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-6.333;QD=12.65;ReadPosRankSum=-2.144;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:202,107:0.35:309
chr19	53727644	rs12972588	T	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:108,55:0.34:163
chr19	53728096	rs7248561	A	G	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-3.650;QD=10.79;ReadPosRankSum=-0.214;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:59,28:0.32:87
chr19	53728105	rs7248883	G	C	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-3.547;QD=9.09;ReadPosRankSum=0.625;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:73,30:0.29:103
chr19	53728160	rs7248781	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:113,45:0.28:158
chr19	53728218	rs11666631	G	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=2.009;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:100,39:0.28:139
chr19	53728280	rs7248812	A	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr19	53733328	.	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.870;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	53740822	rs8113436	T	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr19	53741068	rs12984188	C	T	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:216,119:0.36:335
chr19	53741188	rs12984473	C	T	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.064;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr19	53754736	rs2965240	T	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr19	53760758	rs17305059	T	G	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:246,121:0.33:367
chr19	53762537	rs12609049	C	T	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:225,146:0.39:371
chr19	53793750	rs151171787	T	A	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:50,92:0.65:142
chr19	53818564	rs73055190	C	T	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	53818603	rs10439122	G	A	5756.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	53849446	rs4803089	G	A	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	53849632	rs11406858	G	GC	3345.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	53849700	rs4803090	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	53854397	rs10415799	G	C	9672.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr19	53875494	rs7252803	A	T	2839.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:105,135:0.56:240
chr19	53875523	rs7253268	G	A	3936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.962;QD=12.82;ReadPosRankSum=-1.131;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:119,188:0.61:307
chr19	53875569	rs7253278	G	A	4883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.391;QD=12.75;ReadPosRankSum=-1.626;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:147,236:0.62:383
chr19	53879561	rs72163028	GACA	G	262.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:40,10:0.20:50
chr19	53884412	rs4438413	G	A	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:203,128:0.39:331
chr19	53905129	rs111753331	TA	T	1168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=1.529;QD=9.06;ReadPosRankSum=0.734;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:29,100:0.78:129
chr19	53905501	rs72582439	CTTTTT	C	2071.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=4.683;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=29.60;ReadPosRankSum=3.000;SOR=0.261;set=HC	GT:AD:AF:DP	1/1:5,65:0.93:70
chr19	53905524	.	TTTTG	T	775	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=23;HapScore=2;MGOF=29;MMLQ=19;MQ=57.17;NF=4;NR=32;PP=775;QD=21.6111111111;SC=TTTTTTTTTTTTTTGAGATGG;SbPval=0.42;Source=Platypus;TC=44;TCF=4;TCR=40;TR=36;WE=53905535;WS=53905514;set=Platypus	GT:AD:AF:DP	1/0:8,36:0.82:44
chr19	53910912	rs2061773	G	A	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	53911510	rs8182488	G	A	3453.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:323,185:0.36:508
chr19	53911973	rs10425136	A	G	19277.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=25.74;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,749:1.00:749
chr19	53912242	rs10426347	G	A	14592.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr19	53912521	rs73059151	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:94,51:0.35:145
chr19	53926318	rs36087592	T	A	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.70;MQRankSum=-0.113;QD=21.43;ReadPosRankSum=0.400;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr19	53926320	rs34818233	T	G	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=52.21;MQRankSum=-0.405;QD=22.77;ReadPosRankSum=0.919;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr19	53926630	.	C	T	40.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:64,12:0.16:76
chr19	53958126	rs2708743	T	G	9501.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr19	53958263	rs1984432	G	A	10888.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr19	53959343	rs2708742	G	A	16332.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr19	53959568	rs2617726	G	C	15899.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr19	53983591	.	C	CATA	320.73	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr19	53995004	rs2708845	G	A	3830.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:94,180:0.66:274
chr19	54007145	rs72487103	G	A	4436.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.174;MLEAC=2;MLEAF=1.000;MQ=55.39;MQRankSum=5.026;QD=22.52;ReadPosRankSum=1.412;SOR=0.626;set=HC	GT:AD:AF:DP	1/1:11,186:0.94:197
chr19	54072757	rs3746304	C	T	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr19	54074747	rs3746301	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr19	54075076	rs6509792	A	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.424;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=1.076;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:54,50:0.48:104
chr19	54075126	rs6509793	C	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=2.922;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr19	54080144	rs8109631	A	G	2325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-0.753;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:87,112:0.56:199
chr19	54106547	rs1541925	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr19	54177273	rs7258128	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr19	54185311	rs28653280	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,35:0.39:90
chr19	54188219	rs2060230	G	A	5926.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	54191869	rs1988088	A	G	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	54194034	rs12975184	T	C	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:82,46:0.36:128
chr19	54194049	rs57963210	GAA	G	1717.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=0.470;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:113,62:0.35:175
chr19	54194080	rs12973198	A	C	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-0.908;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:154,99:0.39:253
chr19	54197633	rs10413288	A	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	54197761	rs10415265	T	C	6637.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:223,325:0.59:548
chr19	54198461	rs11672638	A	G	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:95,119:0.56:214
chr19	54198559	rs10420348	A	G	4363.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:98,211:0.68:309
chr19	54200922	rs57056811	T	C	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:40,105:0.72:145
chr19	54201756	rs73057685	C	G	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,55:0.49:113
chr19	54201810	rs71189852	G	GT	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.818;QD=4.81;ReadPosRankSum=1.979;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr19	54203199	rs2116850	G	A	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:69,134:0.66:203
chr19	54204650	.	G	GT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.022;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:73,20:0.22:93
chr19	54204686	rs34886598	G	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr19	54205961	rs10414727	T	A	2714.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:83,134:0.62:217
chr19	54209600	rs4803164	A	G	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:85,131:0.61:216
chr19	54209679	rs7251827	T	A	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.788;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:49,67:0.58:116
chr19	54211903	rs7256241	T	G	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr19	54215465	rs4803166	C	G	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-0.556;QD=14.37;ReadPosRankSum=-0.455;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr19	54216777	rs5828551	T	TTTTG	2272.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:24,58:0.71:82
chr19	54216813	rs2865855	A	T	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.919;QD=15.61;ReadPosRankSum=1.760;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:16,41:0.72:57
chr19	54219769	rs4801998	G	A	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr19	54220019	rs11306531	GT	G	891.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.764;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.484;QD=7.37;ReadPosRankSum=-1.344;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:54,67:0.55:121
chr19	54224191	rs12973211	A	G	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	54224285	rs58416318	CA	C	6859.73	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=21.85;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr19	54225616	rs10426037	T	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	54230337	rs73600866	T	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=0.425;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:119,60:0.34:179
chr19	54240015	rs73053529	C	T	4975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=740;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-3.070;QD=6.82;ReadPosRankSum=1.322;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:445,285:0.39:730
chr19	54242693	rs140276616	G	GCTGACCGTGGTAATA	1273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=4.321;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.039;QD=7.67;ReadPosRankSum=1.492;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:126,40:0.24:166
chr19	54242761	rs60519699	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:71,23:0.24:94
chr19	54244423	rs4802001	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr19	54245706	rs61217982	G	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:137,55:0.29:192
chr19	54245788	rs56013413	G	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:128,70:0.35:198
chr19	54245897	rs73602947	A	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr19	54245935	rs146905912	GT	G	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=0.154;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr19	54255878	rs56196717	GTTT	G,GTT	758.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-1.704;SOR=0.483;set=HC	GT:AD:AF:DP	1/2:6,18,22:0.39,0.48:46
chr19	54257185	rs611356	C	G	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.88;QD=46.00;SOR=1.376;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	54257190	rs62144158	AC	GA	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.26;QD=45.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	54261644	rs3901466	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr19	54291289	rs28461391	C	T	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr19	54291363	rs76038528	G	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr19	54304702	.	CTTTT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.577;QD=2.41;ReadPosRankSum=-0.169;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr19	54307322	rs12460528	G	A	5208.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:495,296:0.37:791
chr19	54308554	rs4806773	C	T	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:160,118:0.42:278
chr19	54308775	rs34166148	C	CT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.077;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr19	54310961	rs2866112	G	C	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-2.299;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:144,67:0.32:211
chr19	54314585	rs6509827	G	A	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	54327440	rs4539722	G	A	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:185,99:0.35:284
chr19	54385437	rs307942	A	C	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	54385820	rs2547362	C	T	11040.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr19	54387313	rs307956	A	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	54394965	rs3745406	T	C	5363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.293;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:164,261:0.61:425
chr19	54395098	rs3745405	G	T	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:48,82:0.63:130
chr19	54396006	.	GCACA	G	855.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.37;ReadPosRankSum=-0.694;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr19	54396012	.	A	G	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=1.156;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:20,24:0.55:44
chr19	54396046	rs146099614	G	GCACA	759.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=1.335;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr19	54409783	rs73603631	G	C	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	54445594	rs11324363	AG	A	4382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.265;QD=9.15;ReadPosRankSum=3.732;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:294,185:0.39:479
chr19	54483311	rs71949256	CGT	C	1043.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr19	54483335	.	T	C	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=4.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.139;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:61,30:0.33:91
chr19	54483337	rs202060954	T	C	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=5.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=-0.337;SOR=1.527;set=HC	GT:AD:AF:DP	0/1:37,33:0.47:70
chr19	54483339	rs12979538	T	C	2800.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.34;SOR=2.505;set=HC	GT:AD:AF:DP	1/1:1,74:0.99:75
chr19	54502791	rs158199	G	A	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:65,88:0.58:153
chr19	54544177	rs1035829	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr19	54545531	rs2433724	T	C	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	54551578	rs35980386	C	T	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	54554942	rs4442924	C	A	136.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	54561387	rs35506340	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr19	54561493	rs202006993	T	TA	2263.73	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:133,154:0.54:287
chr19	54566901	rs662850	C	T	18386.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,705:1.00:705
chr19	54579492	rs117001579	T	C	2658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=3.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-0.477;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:95,126:0.57:221
chr19	54590308	rs74257452	C	T	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-2.067;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:85,65:0.43:150
chr19	54590481	rs73609070	A	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.818;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr19	54598604	rs8106130	T	G	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr19	54599222	rs61742144	G	T	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=1.740;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:127,74:0.37:201
chr19	54599229	rs61742142	C	T	2371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-1.242;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:71,118:0.62:189
chr19	54600232	rs1657535	A	C	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	54604194	rs3760698	G	C	12312.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr19	54606209	rs254260	T	G	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	54606405	rs254259	T	C	10572.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	54609027	rs254257	A	G	11720.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:2,448:1.00:450
chr19	54609170	rs254256	A	G	32555.77	.	AC=2;AF=1.00;AN=2;DB;DP=762;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,724:1.00:724
chr19	54609178	rs254255	C	G	34119.77	.	AC=2;AF=1.00;AN=2;DB;DP=844;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.60;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,801:1.00:801
chr19	54609692	rs254266	T	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	54609746	rs8100254	G	C	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	54610085	.	G	T	9506.77	.	AC=1;AF=0.500;AN=2;DP=695;set=Intersection	GT:AD:AF:DP	0/1:239,446:0.65:685
chr19	54611287	rs621147	G	A	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	54611560	rs254263	C	G	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	54627039	rs35291886	GCACA	G	2934.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	54627097	rs2303557	T	C	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr19	54631376	rs12977981	G	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	54631378	rs171703	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	54631381	rs45513391	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	54631877	.	T	TC	780.73	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr19	54631880	rs74716353	T	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr19	54632352	rs608608	C	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	54632423	rs655240	T	C	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:2,175:0.99:177
chr19	54647078	rs34281370	T	TGG	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.071;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr19	54649671	rs36665	T	C	23716.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=1054;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.20;ReadPosRankSum=-0.644;SOR=0.654;set=HC	GT:AD:AF:DP	1/1:23,957:0.98:980
chr19	54651774	rs35247489	C	T	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.020;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:18,40:0.69:58
chr19	54652203	rs43211	T	C	10680.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:2,403:1.00:405
chr19	54664044	rs3170255	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr19	54664209	rs36657	G	C	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:217,111:0.34:328
chr19	54664752	rs36656	A	C	8553.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr19	54665970	rs36655	C	T	7119.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	54666387	rs113124754	C	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr19	54667709	rs33938391	CTT	C	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.22;ReadPosRankSum=1.224;SOR=3.334;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr19	54667748	rs36654	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	54668392	rs113570942	G	A	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:139,110:0.44:249
chr19	54668487	rs36653	C	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	54676763	rs641738	C	T	12308.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.932;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.54;ReadPosRankSum=1.155;SOR=0.406;set=HC	GT:AD:AF:DP	1/1:1,481:1.00:482
chr19	54676814	.	G	GC	6400.73	.	AC=2;AF=1.00;AN=2;DP=224;set=Intersection	GT:AD:AF:DP	1/1:2,194:0.99:196
chr19	54677759	rs4806721	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	54691225	rs1865961	T	C	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	54695163	rs593073	T	C	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	54696292	rs11420984	C	CT	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-0.520;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:14,37:0.73:51
chr19	54697079	rs7595	C	T	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	54697602	rs36622	G	A	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	54705207	rs36615	G	A	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:245,153:0.38:398
chr19	54705583	rs78525177	A	G	4532.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:139,216:0.61:355
chr19	54705619	rs36614	A	G	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	54711258	rs2304523	T	G	2559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.901;QD=13.33;ReadPosRankSum=-0.229;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:69,123:0.64:192
chr19	54722209	rs58414108	T	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr19	54722250	rs1132610	T	C	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:74,138:0.65:212
chr19	54722594	rs3852891	TG	CA	8038.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;JOINED;set=Intersection	GT:AD:AF:DP	0/1:148,203:0.58:351
chr19	54722911	rs76887317	T	C	3729.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:147,180:0.55:327
chr19	54723118	rs78889379	G	C	6738.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:196,299:0.60:495
chr19	54723310	rs4806725	T	C	10926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=818;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.069;QD=13.44;ReadPosRankSum=-0.079;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:296,517:0.64:813
chr19	54723621	rs117449986	C	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-0.967;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr19	54723738	rs255772	G	C	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:127,183:0.59:310
chr19	54723766	rs114574888	A	G	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:143,192:0.57:335
chr19	54723848	rs45596336	C	G	18036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.853;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-3.047;QD=21.42;ReadPosRankSum=1.465;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:380,462:0.55:842
chr19	54723853	rs201021797	T	TCC	18762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.357;ClippingRankSum=0.000;DB;DP=866;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-2.478;QD=21.89;ReadPosRankSum=2.260;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:393,464:0.54:857
chr19	54723856	rs202080514	T	TA	18700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.711;ClippingRankSum=0.000;DB;DP=869;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-2.346;QD=21.75;ReadPosRankSum=3.050;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:396,464:0.54:860
chr19	54724443	rs201735825	G	A	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.730;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=23.319;MLEAC=1;MLEAF=0.500;MQ=48.55;MQRankSum=4.633;QD=20.62;ReadPosRankSum=1.766;SOR=0.014;set=HC	GT:AD:AF:DP	0/1:14,87:0.86:101
chr19	54724457	.	TA	CG	3719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=25.209;JOINED;MLEAC=1;MLEAF=0.500;MQ=44.83;MQRankSum=3.955;QD=33.82;ReadPosRankSum=-0.521;SOR=0.012;set=HC	GT:AD:AF:DP	0/1:20,90:0.82:110
chr19	54725798	rs75069054	G	T	64.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	54725835	rs201948566	G	C	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.81;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	54725913	rs199822090	C	T	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	54726162	rs56182917	T	G	39.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	54726226	rs75672336	T	C	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.36;QD=24.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	54726324	rs79304773	G	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.84;QD=24.81;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	54735619	rs7250243	G	A	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:266,163:0.38:429
chr19	54742999	rs8100079	C	A	13567.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=43.49;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr19	54743004	rs8099961	A	T	13271.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=44.99;SOR=0.975;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	54743057	rs73053480	G	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	54745507	rs61734496	TG	CA	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.722;JOINED;MLEAC=1;MLEAF=0.500;MQ=51.27;MQRankSum=-7.652;QD=2.83;ReadPosRankSum=-3.239;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:166,26:0.14:192
chr19	54745907	rs62133127	A	G	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:105,138:0.57:243
chr19	54746463	rs139902421	G	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.894;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=8.219;MLEAC=1;MLEAF=0.500;MQ=47.85;MQRankSum=-2.340;QD=3.30;ReadPosRankSum=-1.313;SOR=1.523;set=HC	GT:AD:AF:DP	0/1:99,32:0.24:131
chr19	54754752	rs433291	T	C	3674.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,147:0.99:149
chr19	54754820	rs429425	T	G	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	54755911	rs12977057	C	T	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	54755922	rs12977062	CA	TG	8392.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	54755994	rs417523	G	A	9935.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr19	54756024	rs405443	A	C	10544.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr19	54756302	rs415860	A	G	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	54756657	rs434755	C	T	11428.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,438:1.00:438
chr19	54759361	rs12975366	T	C	30685.77	.	AC=2;AF=1.00;AN=2;DB;DP=1204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,1197:1.00:1197
chr19	54782670	rs10405713	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-1.893;QD=7.68;ReadPosRankSum=-0.903;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr19	54782671	rs41308754	G	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-1.893;QD=7.68;ReadPosRankSum=-0.903;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr19	54782682	rs41308752	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-1.973;QD=3.43;ReadPosRankSum=-0.718;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr19	54782704	rs7247451	G	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.062;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-2.068;QD=14.76;ReadPosRankSum=-2.713;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr19	54782710	rs7247208	A	G	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-2.105;QD=13.53;ReadPosRankSum=-2.002;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr19	54782731	rs10404685	G	A	1315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-1.271;QD=21.22;ReadPosRankSum=-2.592;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:28,34:0.55:62
chr19	54782737	rs41308750	T	C	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-1.247;QD=19.36;ReadPosRankSum=-1.630;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:34,43:0.56:77
chr19	54783923	rs366337	A	G	5987.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	54802314	rs142621391	C	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr19	54802337	rs183121721	G	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr19	54848507	rs55873636	T	C	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-1.842;QD=11.65;ReadPosRankSum=-1.933;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr19	54848684	rs8105624	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.043;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr19	54848986	rs36068997	C	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr19	54849942	rs2241384	G	A	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:213,92:0.30:305
chr19	54867572	rs7257187	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:108,50:0.32:158
chr19	54871591	rs199781821	C	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.83;MQRankSum=-3.008;QD=5.81;ReadPosRankSum=-1.071;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr19	54871770	.	A	G	716.77	.	AC=1;AF=0.500;AN=2;DP=165;set=Intersection	GT:AD:AF:DP	0/1:116,49:0.30:165
chr19	54875881	rs62132211	C	T	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.20;MQRankSum=-1.809;QD=5.56;ReadPosRankSum=2.188;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:124,63:0.34:187
chr19	54876324	rs3745441	T	C	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:207,142:0.41:349
chr19	54926249	rs17516390	T	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr19	54930822	rs35134302	A	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:49,69:0.58:118
chr19	54937862	rs45477994	C	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:139,73:0.34:212
chr19	54940303	rs3745428	T	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	54940471	rs889149	C	T	2578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.141;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:368,163:0.31:531
chr19	54942419	rs79275620	C	G	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:215,132:0.38:347
chr19	54946784	rs3745420	A	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	54962374	rs1035450	A	G	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	54962467	rs1035451	G	A	10685.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chr19	54962579	rs1035452	C	T	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	54964019	rs963352	C	T	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	54965527	rs7247170	C	T	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	54965860	rs3813148	G	A	21877.77	.	AC=2;AF=1.00;AN=2;DB;DP=847;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=26.04;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,840:1.00:840
chr19	54965889	rs3813147	G	C	12907.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.56;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,505:1.00:505
chr19	54966579	rs889147	C	G	11423.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,443:1.00:443
chr19	54969075	rs45605939	C	T	12223.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,463:1.00:463
chr19	54971229	rs3745437	T	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	54973280	rs10423424	C	G	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr19	54973988	rs140013148	GCCT	G	19122.73	.	AC=2;AF=1.00;AN=2;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.68;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr19	54974318	rs10406453	T	C	10462.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr19	54974774	rs1981829	A	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	55009497	rs3865495	A	C	6779.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.18;QD=25.02;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr19	55014172	rs73070113	A	T	8405.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:236,403:0.63:639
chr19	55019402	rs2277974	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	55020233	rs149731338	C	T	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.09;QD=25.35;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	55043810	rs17606773	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	55044228	rs10553990	TTC	T	4119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=-1.063;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:90,126:0.58:216
chr19	55044241	.	CT	C	571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=1.824;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:135,77:0.36:212
chr19	55044387	rs62131628	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr19	55049088	rs143540272	A	AAAAG	1449.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.24;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	55053911	rs7251007	G	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	55054854	rs12975662	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.522;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr19	55086249	rs45523736	T	C	9189.77	.	AC=1;AF=0.500;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	0/1:292,438:0.60:730
chr19	55142101	rs3760861	G	A	8384.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	55142930	rs3843752	C	T	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	55143083	rs1061679	T	C	11172.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:2,431:1.00:433
chr19	55143156	rs12462774	TG	CA	14238.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,549:1.00:551
chr19	55143452	rs1061680	T	C	18613.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=26.55;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,701:1.00:701
chr19	55143491	rs1061681	G	T	20216.77	.	AC=2;AF=1.00;AN=2;DB;DP=768;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;QD=26.57;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,761:1.00:761
chr19	55174498	rs28366008	T	C	3154.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:263,173:0.40:436
chr19	55175596	rs3050015	T	TGTGGGAG	9311.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	55175740	rs3745871	C	T	10410.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:258,491:0.66:749
chr19	55176262	rs731170	A	G	9269.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr19	55176535	rs1925241	C	T	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr19	55176702	rs1631746	A	C	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.309;QD=6.11;ReadPosRankSum=-0.807;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:86,49:0.36:135
chr19	55178162	rs11574576	A	G	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:192,107:0.36:299
chr19	55179364	rs1048801	A	G	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:209,117:0.36:326
chr19	55246731	rs77241525	C	A	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-18.135;QD=3.92;ReadPosRankSum=2.731;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:335,128:0.28:463
chr19	55246812	rs180893263	G	C	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:59,136:0.70:195
chr19	55246904	rs17273316	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr19	55246909	rs62132700	G	A	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.280;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=8.306;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=4.560;QD=28.51;ReadPosRankSum=-0.203;SOR=0.063;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr19	55246909	.	GCA	ACT	707	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=4;MGOF=19;MMLQ=27;MQ=45.81;NF=3;NR=10;PP=707;QD=58.4975288356;SC=TTCCTCACAGGCAGGATGGTC;SbPval=0.29;Source=Platypus;TC=28;TCF=4;TCR=24;TR=13;WE=55246919;WS=55246894;set=Platypus	GT:AD:AF:DP	1/0:15,13:0.46:28
chr19	55246911	rs62132701	A	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.260;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=8.306;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=4.560;QD=28.61;ReadPosRankSum=-0.203;SOR=0.063;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr19	55250061	rs3810344	C	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:111,13:0.10:124
chr19	55258778	rs34843749	G	A	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	55258808	rs35861855	C	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:110,65:0.37:175
chr19	55266447	rs2916031	A	G	95.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.87;QD=23.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	55266496	rs28715756	A	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.30;QD=25.72;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	55278607	rs2365247	C	T	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:132,145:0.52:277
chr19	55278630	rs2915996	G	C	3157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-3.799;QD=8.63;ReadPosRankSum=2.899;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:207,159:0.43:366
chr19	55278761	rs147103803	A	G	10853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=0.000;DB;DP=905;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-1.130;QD=12.10;ReadPosRankSum=1.735;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:372,525:0.59:897
chr19	55278805	rs34684434	A	C	7239.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:269,361:0.57:630
chr19	55278865	rs35075966	C	T	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:90,135:0.60:225
chr19	55281176	rs188783237	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr19	55281315	rs2304224	G	T	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:172,68:0.28:240
chr19	55281330	rs148427642	T	G	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:186,84:0.31:270
chr19	55284858	rs116929762	G	A	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.24;QD=28.88;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	55294927	.	A	G	5262.77	.	AC=2;AF=1.00;AN=2;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	55297935	rs185375533	C	G	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.02;MQRankSum=1.453;QD=10.41;ReadPosRankSum=-0.919;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:63,73:0.54:136
chr19	55315307	rs112963206	C	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.16;QD=22.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	55317456	rs149046820	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr19	55329901	rs643347	A	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.52;QD=25.82;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	55329922	rs1049150	A	T	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.10;QD=26.13;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	55331308	rs1065331	C	A	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.01;QD=25.36;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	55346409	rs4806584	T	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	55350963	.	T	TCCCGGAGCTCCTATGACATGTA	1101.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.30;QD=84.75;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	55367451	rs199889703	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.19;MQRankSum=-3.251;QD=5.94;ReadPosRankSum=0.000;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr19	55378008	rs3745902	C	T	7575.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:223,351:0.61:574
chr19	55386624	rs11084376	C	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-1.416;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr19	55386890	rs11084377	A	G	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr19	55386920	rs8112766	A	G	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr19	55396613	rs10402324	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr19	55396900	rs1865096	A	G	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.601;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=4.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-0.800;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:104,52:0.33:156
chr19	55399311	rs7258679	G	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-1.113;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr19	55401170	rs16986050	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:116,57:0.33:173
chr19	55420801	rs3765013	C	A	2407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.939;QD=4.67;ReadPosRankSum=0.406;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:359,157:0.30:516
chr19	55420924	rs3765014	C	G	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:148,97:0.40:245
chr19	55421293	.	CA	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=1.543;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr19	55423488	rs73619967	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:161,79:0.33:240
chr19	55423530	rs73619969	C	T	2425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=1.476;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:279,147:0.35:426
chr19	55423967	.	CAAAAAAAAAAAAAAAAAAAA	C	448.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=69.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;SOR=5.278;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr19	55438940	.	AAAAC	A	7789.73	.	AC=2;AF=1.00;AN=2;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.64;QD=43.76;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	55439166	rs269933	T	C	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	55439197	rs269934	A	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	55441769	rs269949	G	A	1032.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	55441902	rs269950	T	C	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	55441995	rs269951	A	G	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	55446084	.	C	CT	66.75	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr19	55447572	rs775876	A	G	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	55447595	rs7359929	A	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.11;ReadPosRankSum=-0.000;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr19	55447612	rs17699561	G	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr19	55447840	rs4806626	A	C	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=3.031;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:94,47:0.33:141
chr19	55451050	rs10418277	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:70,35:0.33:105
chr19	55451232	rs775882	C	T	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:315,160:0.34:475
chr19	55451797	rs775883	C	T	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:206,120:0.37:326
chr19	55451890	rs775884	T	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:110,70:0.39:180
chr19	55452194	rs11290760	CA	C	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.059;QD=4.32;ReadPosRankSum=1.270;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr19	55453134	rs775886	G	A	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:116,73:0.39:189
chr19	55481398	rs269912	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.845;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr19	55481669	rs269913	T	C	7064.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	55488178	.	C	CTTTTTT	1764.73	.	AC=2;AF=1.00;AN=2;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;QD=30.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	55488180	.	C	T	1834.77	.	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=44.75;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	55493441	rs55799796	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr19	55493728	rs17699678	C	T	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:205,98:0.32:303
chr19	55494188	rs3826883	C	T	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:46,93:0.67:139
chr19	55494651	rs34804158	A	G	4966.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:140,241:0.63:381
chr19	55494740	rs10412915	T	C	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:103,172:0.63:275
chr19	55494881	rs11672113	C	G	3930.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:108,183:0.63:291
chr19	55497506	rs71367132	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr19	55497826	rs11667481	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,11:0.92:12
chr19	55497843	rs1036231	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr19	55501579	rs1654495	A	C	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	55501834	rs1654496	C	A	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	55501866	rs12973968	G	C	5583.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	55511960	rs34129339	TA	T	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.926;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.070;QD=4.43;ReadPosRankSum=-0.294;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	55512232	rs1043673	C	A	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	55512316	rs1043678	T	G	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	55512347	rs1043680	G	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	55525388	rs10417981	G	T	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	55525497	rs1671150	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	55525596	rs1654412	T	C	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	55525894	rs1671151	G	A	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	55526345	rs1671152	T	G	21444.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr19	55526359	rs1654413	A	T	21905.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr19	55526373	rs2304166	G	C	20705.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr19	55526932	rs140499950	TTACTC	T	220.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	55527081	rs2304167	C	T	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	55527189	rs1671153	G	T	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	55527276	rs1654484	T	C	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	55529836	rs1654415	C	T	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	55529933	rs1671192	A	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	55529936	rs2304168	A	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=1.193;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	55530035	rs1654416	C	T	7051.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	55536595	rs1613662	G	A	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	55538980	rs1654425	T	C	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	55539049	rs5030705	C	T	6932.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	55539061	rs892089	A	G	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr19	55539072	rs892090	T	G	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	55559740	rs1059211	G	A	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	55570574	rs1654447	A	G	7751.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr19	55574412	rs1654456	G	T	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	55574429	rs113253419	A	AGGCGTCC	4306.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	55574512	rs3816043	G	A	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	55598724	rs1054940	A	G	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	55603388	rs10410929	T	C	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	55614923	rs2532060	T	C	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	55644325	rs890868	A	C	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	55665584	rs7252610	A	C	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	55671337	rs890872	C	T	6466.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	55699454	rs890870	T	C	6988.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr19	55699496	rs199623495	C	T	4793.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:143,234:0.62:377
chr19	55699575	rs3803905	T	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:133,66:0.33:199
chr19	55699646	rs3803904	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,10:0.20:49
chr19	55702910	rs2288523	C	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr19	55703237	rs11394932	C	CG	10455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;ClippingRankSum=0.000;DB;DP=1124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.695;QD=9.52;ReadPosRankSum=2.091;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:706,392:0.36:1098
chr19	55703326	rs10545294	ACCT	A	4101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;ClippingRankSum=0.000;DB;DP=857;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.888;QD=6.49;ReadPosRankSum=0.595;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:405,227:0.36:632
chr19	55703438	rs8103223	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr19	55708557	rs2288521	A	G	13675.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,530:1.00:530
chr19	55708573	rs2288520	G	A	7912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=1.721;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:235,379:0.62:614
chr19	55709928	rs2288519	C	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	55711543	rs17700265	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	55713385	rs73066689	A	G	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:127,168:0.57:295
chr19	55713535	rs2288515	G	A	4180.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:169,203:0.55:372
chr19	55715309	rs45535035	C	T	17685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.879;ClippingRankSum=0.000;DB;DP=824;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.54;ReadPosRankSum=-1.182;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:344,477:0.58:821
chr19	55715319	rs9304763	C	G	16686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.93;ReadPosRankSum=-0.081;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:337,424:0.56:761
chr19	55716800	rs2288516	A	G	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:239,142:0.37:381
chr19	55720908	rs3745921	G	C	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:164,113:0.41:277
chr19	55738425	rs3745919	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=-0.792;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr19	55738634	rs4644955	T	C	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	55738746	rs4374298	G	A	5699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-0.282;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:197,274:0.58:471
chr19	55739515	rs4255895	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	55739605	rs4606850	C	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr19	55739813	rs10419308	G	A	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:151,148:0.49:299
chr19	55741961	rs28678477	G	C	2112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=-0.951;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:83,108:0.57:191
chr19	55751123	rs8104509	G	A	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	55752565	rs143884461	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,32:0.32:100
chr19	55756980	rs3745920	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:42,66:0.61:108
chr19	55758628	rs7258327	C	T	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.215;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	55776823	rs67351527	G	A	7222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=-1.171;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:229,356:0.61:585
chr19	55777143	rs62126349	T	C	2981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=1.042;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:96,147:0.60:243
chr19	55785715	rs11427517	A	AC	486.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr19	55790886	rs10701478	A	AGCCGCCGCC	3789.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:81,91:0.53:172
chr19	55791091	rs62126354	C	T	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:171,109:0.39:280
chr19	55800789	rs62126358	C	G	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:85,45:0.35:130
chr19	55805841	rs181742944	C	T	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr19	55815894	rs1172820	T	C	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:74,80:0.52:154
chr19	55816678	rs1172821	C	T	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:48,83:0.63:131
chr19	55824332	rs7246479	T	G	5243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=2.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.046;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:135,253:0.65:388
chr19	55831576	rs897794	AA	CC	4814.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;JOINED;set=Intersection	GT:AD:AF:DP	0/1:88,123:0.58:211
chr19	55831589	rs897796	A	G	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:68,91:0.57:159
chr19	55831723	rs897797	T	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr19	55832427	rs10412726	T	G	7983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=0.009;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:231,378:0.62:609
chr19	55854313	rs2384685	G	A	2523.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:67,106:0.61:173
chr19	55854389	rs12610863	G	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr19	55856083	rs11084395	T	C	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=2.187;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:152,69:0.31:221
chr19	55856211	rs10405231	C	T	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:174,72:0.29:246
chr19	55857777	rs45480394	G	T	3995.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:128,187:0.59:315
chr19	55865350	rs12461665	G	A	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.786;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:72,36:0.33:108
chr19	55866336	.	G	GC	994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=10.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.689;SOR=3.469;set=HC	GT:AD:AF:DP	0/1:38,48:0.56:86
chr19	55866468	rs12971931	G	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr19	55869419	rs11418715	C	CA	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.000;QD=6.52;ReadPosRankSum=0.026;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:25,36:0.59:61
chr19	55869879	rs67168196	GGCTCCTTCATCTCGCCCCATGGCT	G	16406.73	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	55870104	rs12974819	G	C	11691.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr19	55870289	rs12974907	C	T	16546.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr19	55870351	rs12976922	T	C	11263.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr19	55870600	rs12460416	C	G	11237.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr19	55871019	rs12609732	A	G	6141.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	55872191	rs897799	G	A	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr19	55872397	rs2124918	A	G	11696.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr19	55872531	rs11084397	C	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:138,65:0.32:203
chr19	55872566	rs2124919	A	G	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	55872864	rs11673515	G	C	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=26.21;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	55872955	rs11673554	G	C	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	55873642	rs4252574	C	T	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	55877231	rs1042505	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr19	55877255	rs4252578	G	T	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=1.872;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr19	55879872	rs1126757	C	T	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:242,116:0.32:358
chr19	55880385	rs62128183	G	T	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr19	55888518	.	T	TCCTGGGTCTGAGGGAGGAGGGCTGGGCCTGGACA	1221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-3.475;QD=18.23;ReadPosRankSum=2.011;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:40,27:0.40:67
chr19	55888542	.	TGG	T	283	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=5;HapScore=1;MGOF=40;MMLQ=26;MQ=55.37;NF=0;NR=5;PP=283;QD=62.8;SC=GAGGAGGGGCTGGGGGCCTGG;SbPval=1.0;Source=Platypus;TC=26;TCF=3;TCR=23;TR=5;WE=55888551;WS=55888526;set=Platypus	GT:AD:AF:DP	1/0:21,5:0.19:26
chr19	55895588	rs1870074	G	A	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	55903158	rs10653185	C	CAG	1343.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=43.35;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	55913038	rs7608	C	T	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:56,95:0.63:151
chr19	55913286	rs11393810	T	TC	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	55914374	rs11672075	C	T	9619.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	55964546	rs3214450	G	GC	426.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	55966275	rs117868499	G	A	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=1.470;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:144,90:0.38:234
chr19	55966346	rs2277959	C	T	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:239,139:0.37:378
chr19	55966895	rs35627652	TG	T	1341.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	55966971	rs12462602	C	T	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	55967240	.	A	AGGGTCTGAGGGAGGAGGGGCTGGGCCTGGACTCCT	570.52	.	AC=2;AF=1.00;AN=2;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,0:0:0
chr19	55993260	rs34864744	A	G	14129.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.053;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=0.000;QD=25.69;ReadPosRankSum=1.370;SOR=0.305;set=HC	GT:AD:AF:DP	1/1:1,549:1.00:550
chr19	55993373	.	G	GCCGCCC	1116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=2.976;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.414;QD=12.14;ReadPosRankSum=-0.579;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:62,30:0.33:92
chr19	55993790	rs7254184	A	G	3459.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.82;ReadPosRankSum=1.167;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:2,132:0.99:134
chr19	55993876	rs10423355	T	C	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	55996939	rs3745450	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	55998262	rs77664073	C	T	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	55999993	rs4405662	A	G	9846.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr19	56000429	.	GC	G	1806.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.03;ReadPosRankSum=-0.066;SOR=0.676;set=HC	GT:AD:AF:DP	1/1:5,77:0.94:82
chr19	56000809	rs142097230	C	T	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:74,116:0.61:190
chr19	56000896	rs62130160	G	T	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	56001419	rs10716127	CG	C	675.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	56001871	rs4274529	C	T	3322.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.310;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.859;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.80;ReadPosRankSum=0.680;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:1,123:0.99:124
chr19	56012590	rs11669496	G	A	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=0.475;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr19	56012597	rs11669422	A	G	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=-0.949;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr19	56015580	.	C	T	920.77	.	AC=1;AF=0.500;AN=2;DP=130;set=Intersection	GT:AD:AF:DP	0/1:72,49:0.40:121
chr19	56024519	rs671542	T	C	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	56024563	rs514574	G	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	56024599	rs671152	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	56029465	rs4801331	G	A	26248.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.961;ClippingRankSum=0.000;DB;DP=1051;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;MQRankSum=-0.189;QD=25.58;ReadPosRankSum=-1.953;SOR=0.176;set=HC	GT:AD:AF:DP	1/1:2,1024:1.00:1026
chr19	56030009	rs925878	C	T	36596.77	.	AC=2;AF=1.00;AN=2;DB;DP=1444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,1406:1.00:1406
chr19	56030428	rs10217	C	A	3327.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.27;ReadPosRankSum=0.078;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:3,140:0.98:143
chr19	56040962	rs71830799	CAGAGAGG	C	2618.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:37,66:0.64:103
chr19	56041255	rs620251	C	G	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	56047448	rs310453	A	G	12114.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:2,476:1.00:478
chr19	56052337	rs55643341	A	AC	37739.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=1210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.222;QD=33.49;ReadPosRankSum=1.617;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:2,1125:1.00:1127
chr19	56052400	rs35844194	G	T	9383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=775;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.097;QD=12.30;ReadPosRankSum=-3.480;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:306,457:0.60:763
chr19	56052770	rs654439	C	T	10189.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	56055396	rs7256162	C	T	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	56055578	rs35471514	G	A	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:227,160:0.41:387
chr19	56056184	rs491639	A	G	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	56089219	rs1053817	C	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-2.159;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr19	56089353	rs2292812	C	T	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:111,75:0.40:186
chr19	56089908	rs113850871	C	CCCG	4713.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=2.023;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:288,133:0.32:421
chr19	56090493	rs12974617	A	C	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.352;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=2.231;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:120,63:0.34:183
chr19	56104136	rs7247236	T	C	2700.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=0.482;SOR=0.291;set=HC	GT:AD:AF:DP	1/1:1,104:0.99:105
chr19	56104524	rs10403432	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr19	56104560	rs10403462	C	G	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:79,62:0.44:141
chr19	56109344	rs79090458	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-2.251;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr19	56114045	rs1077806	C	T	4510.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:158,214:0.58:372
chr19	56114237	rs310459	G	A	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	56135983	rs117034576	T	C	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:94,57:0.38:151
chr19	56156447	rs11084406	A	G	13727.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr19	56160399	rs7246799	T	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	56162776	rs2287791	C	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	56163704	rs73062531	C	T	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	56170771	rs537728	G	A	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	56171778	rs507498	A	C	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	56172601	.	C	T	3275.77	.	AC=1;AF=0.500;AN=2;DP=238;set=Intersection	GT:AD:AF:DP	0/1:78,151:0.66:229
chr19	56175149	rs310444	G	A	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	56180732	rs681804	T	C	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	56180968	rs617073	C	T	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	56185250	rs664684	G	A	9934.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr19	56203985	rs66906879	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr19	56220430	.	G	GT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.789;QD=1.45;ReadPosRankSum=0.109;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr19	56220504	rs73062405	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=26.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	56222998	rs28527338	C	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	56223486	rs59900917	G	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	56241265	rs193384	A	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	56249445	rs755804	A	G	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	56273136	rs59333538	T	C	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.66;QD=24.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	56273143	.	A	AT	103.80	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.50;QD=17.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	56273155	rs62126990	T	C	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.34;QD=26.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	56273868	rs200686834	G	A	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.867;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.52;MQRankSum=-6.334;QD=3.60;ReadPosRankSum=0.983;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr19	56273902	rs2045865	C	A	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.190;MLEAC=1;MLEAF=0.500;MQ=47.94;MQRankSum=-10.334;QD=6.63;ReadPosRankSum=0.878;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:175,44:0.20:219
chr19	56273904	rs199794484	A	C	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.834;MLEAC=1;MLEAF=0.500;MQ=48.00;MQRankSum=-8.703;QD=6.18;ReadPosRankSum=-0.513;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:183,52:0.22:235
chr19	56274086	rs138079370	G	A	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.16;MQRankSum=-3.488;QD=13.46;ReadPosRankSum=2.058;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:41,67:0.62:108
chr19	56274460	rs200071964	A	G	11732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.271;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.500;MQ=49.56;MQRankSum=-0.373;QD=17.41;ReadPosRankSum=6.668;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:129,545:0.81:674
chr19	56274583	.	T	C	557.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.726;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=4.197;MLEAC=2;MLEAF=1.000;MQ=41.63;MQRankSum=-2.289;QD=23.24;ReadPosRankSum=-2.337;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr19	56283049	rs58970191	A	T	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.873;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=55.09;MQRankSum=-5.726;QD=11.36;ReadPosRankSum=-2.705;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr19	56283054	rs201873504	A	G	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.113;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.111;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=-6.303;QD=13.04;ReadPosRankSum=-1.406;SOR=1.916;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr19	56283056	rs200206915	G	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-5.530;QD=13.10;ReadPosRankSum=-2.082;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr19	56283061	rs28568514	C	T	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=5.245;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-5.193;QD=11.08;ReadPosRankSum=-1.626;SOR=1.727;set=HC	GT:AD:AF:DP	0/1:39,21:0.35:60
chr19	56283297	rs199759246	G	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.174;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=9.252;MLEAC=1;MLEAF=0.500;MQ=40.95;MQRankSum=0.590;QD=2.91;ReadPosRankSum=0.432;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr19	56284090	rs202217602	G	A	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.958;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=50.18;MQRankSum=-1.092;QD=8.49;ReadPosRankSum=1.805;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:133,99:0.43:232
chr19	56284396	rs141642534	A	T	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.60;QD=30.99;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	56288941	rs17708417	C	T	3181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-0.647;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:307,184:0.37:491
chr19	56289284	rs56312799	T	TC	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr19	56297249	rs59238812	C	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:69,52:0.43:121
chr19	56300107	rs58239530	CAAAAA	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.232;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr19	56303592	rs75255203	C	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:80,77:0.49:157
chr19	56307583	rs2616940	A	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:65,31:0.32:96
chr19	56307723	rs10422937	T	C	137.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	56319167	rs7254875	C	T	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	56321414	rs299163	C	A	9770.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	56372705	rs4801635	C	T	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr19	56390237	rs302453	A	T	5907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=1.005;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:225,287:0.56:512
chr19	56392875	rs302456	T	G	4497.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:91,205:0.69:296
chr19	56393051	rs302457	T	C	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	56410222	rs302827	C	T	4419.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:157,219:0.58:376
chr19	56410340	rs302828	T	G	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	56413583	rs302835	A	G	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	56419263	rs17711239	T	C	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-0.348;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:75,41:0.35:116
chr19	56421775	rs11670284	C	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	56421826	rs12982016	C	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	56421861	rs12982043	C	T	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	56422976	rs1436079	A	G	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	56423033	rs4801643	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	56423074	rs977070	C	G	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	56423254	rs304002	G	A	8370.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr19	56423668	rs304001	G	A	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	56423692	rs304000	C	T	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	56423728	rs303999	A	G	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	56423893	rs303998	G	A	9118.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr19	56424443	rs303997	T	C	5483.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.15;ReadPosRankSum=-1.451;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:2,216:0.99:218
chr19	56459342	rs306507	C	T	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.519;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:262,119:0.31:381
chr19	56459458	rs61195059	C	T	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:226,104:0.32:330
chr19	56459614	rs306506	G	C	2610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=1.528;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:265,149:0.36:414
chr19	56459703	rs1436077	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr19	56464058	rs306501	C	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr19	56464152	rs73613404	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr19	56466227	rs7259764	A	G	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:244,128:0.34:372
chr19	56467281	rs61750024	A	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:131,94:0.42:225
chr19	56473460	rs6509975	T	C	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	56477687	rs306497	A	G	2650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.706;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-1.892;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:60,126:0.68:186
chr19	56487603	rs306481	A	G	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:146,85:0.37:231
chr19	56490778	rs306475	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr19	56490943	rs11084419	C	T	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:25,67:0.73:92
chr19	56499279	rs306457	G	C	3552.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:107,175:0.62:282
chr19	56499337	rs306456	C	T	2678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.71;ReadPosRankSum=1.881;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:43,70:0.62:113
chr19	56499345	rs306455	A	G	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=1.104;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:35,65:0.65:100
chr19	56510965	rs62123572	C	T	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,44:0.62:71
chr19	56511082	rs35427984	C	G	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	56527179	rs149794790	T	TC	8878.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	56527313	rs12610241	C	T	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	56527345	rs12610242	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	56530664	rs306428	A	G	8387.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr19	56538203	rs3103612	C	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	56538976	rs471979	G	C	11648.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:1,441:1.00:442
chr19	56539240	rs397977	C	T	7675.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr19	56549510	rs16986899	T	C	7196.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:143,187:0.57:330
chr19	56549532	rs306447	A	G	7541.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:151,208:0.58:359
chr19	56552230	rs2569425	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	56552456	rs61732213	G	T	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:243,124:0.34:367
chr19	56561749	rs2574762	A	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	56564916	rs35553570	G	C	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr19	56565164	rs3103057	G	A	5546.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	56569629	rs12462795	C	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:98,55:0.36:153
chr19	56572832	rs10409555	G	A	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=1.820;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:140,69:0.33:209
chr19	56572875	rs36118060	G	A	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.685;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:171,73:0.30:244
chr19	56599366	rs373134866	GCC	G	802.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.49;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	56599405	rs4077285	C	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	56599437	rs5828672	CTCG	C	4126.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	56691912	rs274171	G	C	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:173,101:0.37:274
chr19	56693643	rs274174	T	C	7923.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr19	56694505	rs575756	C	T	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:178,104:0.37:282
chr19	56702323	rs4801296	C	T	6155.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	56717333	rs111438429	C	A	1928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.906;QD=4.35;ReadPosRankSum=-1.007;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:315,128:0.29:443
chr19	56717353	rs10419548	A	G	11677.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.06;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,466:1.00:466
chr19	56718585	rs4801690	A	G	13625.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.42;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,536:1.00:536
chr19	56718698	rs9807807	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr19	56719405	rs12979551	A	C	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chr19	56719822	rs1865101	G	T	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,196:0.99:197
chr19	56719853	rs1865102	C	A	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	56735235	rs7250393	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr19	56758938	rs35779585	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:61,32:0.34:93
chr19	56901293	rs6509995	C	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:80,39:0.33:119
chr19	56904509	rs11439847	T	TA	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.758;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=3.247;QD=2.44;ReadPosRankSum=1.977;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:102,39:0.28:141
chr19	56935527	rs3810340	A	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:121,66:0.35:187
chr19	56953585	rs3760849	T	C	1450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=1.638;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:227,88:0.28:315
chr19	56953863	rs8107758	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	56953963	rs35914474	G	A	4680.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:156,226:0.59:382
chr19	56961144	rs35614616	T	A	79.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	56969332	rs3745826	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	56973848	rs35027158	T	C	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:66,100:0.60:166
chr19	56978525	rs11881919	T	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:147,74:0.33:221
chr19	56981382	rs3760848	T	C	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:158,94:0.37:252
chr19	57006415	rs17207481	A	G	5060.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:152,244:0.62:396
chr19	57023025	rs67525856	CTT	C	8458.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	57027606	rs10419939	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	57035672	rs142277230	C	CT	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr19	57036012	rs11667052	G	T	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.508;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=-0.035;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr19	57036653	rs3752176	G	A	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	57036678	rs3752177	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr19	57037103	rs16987303	C	G	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:35,69:0.66:104
chr19	57050648	rs12981980	G	A	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:61,81:0.57:142
chr19	57050721	rs78346163	G	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	57058998	rs34136271	C	G	6151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=1149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.217;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:772,370:0.32:1142
chr19	57060573	rs2074941	C	T	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.85;ReadPosRankSum=0.566;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	57062073	rs379214	T	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	57066013	rs10409531	C	T	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:67,109:0.62:176
chr19	57081543	.	G	A	83.77	.	AC=1;AF=0.500;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	57085769	rs10421285	G	C	5240.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:126,241:0.66:367
chr19	57087951	rs995934	G	A	40.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-0.674;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr19	57088850	rs3752180	T	C	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:226,112:0.33:338
chr19	57089050	rs4801177	C	T	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	57089375	rs4570977	A	G	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:56,97:0.63:153
chr19	57175484	rs7250003	A	G	5489.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:330,279:0.46:609
chr19	57176096	rs77114013	C	G	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:478,294:0.38:772
chr19	57176198	rs8108756	T	G	4611.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	0/1:478,265:0.36:743
chr19	57176304	rs12460400	T	G	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:383,229:0.37:612
chr19	57176482	rs12462469	C	T	2946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.139;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:362,175:0.33:537
chr19	57176820	rs12462993	C	A	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.852;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:56,24:0.30:80
chr19	57176838	rs12462995	C	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=-0.884;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:38,22:0.37:60
chr19	57184167	rs12327605	A	G	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr19	57293394	rs2286751	A	G	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:109,100:0.48:209
chr19	57335022	rs1860565	G	A	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-1.378;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:193,112:0.37:305
chr19	57335179	rs1860566	T	C	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:82,82:0.50:164
chr19	57641146	rs1027392	A	G	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	57642098	rs3764574	G	A	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	57642782	rs9973206	C	A	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	57646570	rs4801433	T	C	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	57647015	rs7251328	A	G	8638.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	57647236	rs7252632	T	C	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	57648277	rs4801200	A	T	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	57648433	rs2370135	T	C	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	57653864	rs11084488	T	C	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	57654065	rs58537382	T	C	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	57654104	rs59976893	T	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	57654217	rs10426157	T	G	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	57665750	rs8108591	T	C	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	57666840	rs12459119	G	A	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	57703209	rs2302059	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr19	57703369	rs7250511	T	C	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:205,109:0.35:314
chr19	57717081	rs8110121	G	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	57723007	rs2074858	G	C	6702.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	57723013	rs917340	G	A	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	57742472	rs11084490	G	C	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	57742489	rs58264281	C	T	15566.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr19	57742493	rs142269286	AGGACGAGCAGGATT	A	15841.73	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=1.235;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr19	57742514	rs150998448	G	GC	12810.73	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.27;SOR=1.299;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr19	57743039	rs758098	T	C	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.155;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	57752326	rs8111661	C	G	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	57755567	.	C	CT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.316;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr19	57760018	rs2014572	G	A	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	57760057	rs3746231	G	A	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=25.63;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	57760216	rs1019071	G	A	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	57764770	rs10421632	G	A	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	57765432	rs8100154	A	G	11569.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr19	57832089	rs4801461	G	T	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	57832257	rs4801462	T	C	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	57835252	rs4801216	C	T	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	57835279	rs4801467	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr19	57837926	rs8110400	C	A	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	57838018	rs6510057	C	G	5154.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	57839150	rs8100491	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	57839567	rs1968090	T	A	10483.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr19	57840547	rs10410649	A	G	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:141,86:0.38:227
chr19	57863149	rs34172522	T	G	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:49,91:0.65:140
chr19	57865082	rs862703	T	C	11659.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:1,447:1.00:448
chr19	57868336	rs862709	A	G	9517.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	57890000	rs2361119	C	T	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	57909872	rs4801478	G	A	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	57922664	rs4801480	T	C	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	57931303	rs2014827	C	A	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:84,114:0.58:198
chr19	57932027	rs2158009	C	T	3994.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:108,187:0.63:295
chr19	57954619	rs73065220	G	A	2313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-0.670;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:65,107:0.62:172
chr19	57954628	rs7249430	G	A	7398.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=36.09;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	57956828	rs7246856	T	G	5492.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	57967049	rs61744949	G	T	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:94,59:0.39:153
chr19	57967133	rs28649880	G	A	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:148,119:0.45:267
chr19	57983457	rs10153521	A	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:67,50:0.43:117
chr19	57984918	rs2074058	A	G	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:130,78:0.38:208
chr19	57985460	rs2074059	T	A	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:163,86:0.35:249
chr19	57985566	rs2074060	G	C	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:115,106:0.48:221
chr19	57985949	rs35044633	GT	G	3270.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:73,105:0.59:178
chr19	57986184	rs2285607	G	A	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:116,111:0.49:227
chr19	57987905	rs2067055	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,43:0.43:99
chr19	57988666	rs34678661	A	AGCC	3431.73	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:178,96:0.35:274
chr19	57999182	rs8113039	A	G	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:244,149:0.38:393
chr19	58001512	rs11672136	T	A	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.405;QD=7.03;ReadPosRankSum=1.515;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:101,69:0.41:170
chr19	58002819	rs6510085	T	A	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-4.649;QD=4.17;ReadPosRankSum=2.201;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:144,56:0.28:200
chr19	58003359	rs117470965	T	G	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.67;QD=24.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	58003488	rs2074070	A	G	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-4.839;QD=5.08;ReadPosRankSum=0.084;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:114,53:0.32:167
chr19	58003580	rs2074071	A	G	2481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-7.263;QD=5.74;ReadPosRankSum=1.123;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:280,152:0.35:432
chr19	58003613	rs2074072	C	T	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.348;QD=6.15;ReadPosRankSum=0.443;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:222,121:0.35:343
chr19	58003728	rs2074073	G	A	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:176,141:0.44:317
chr19	58003873	rs2074074	C	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:80,46:0.37:126
chr19	58004158	rs2074075	C	T	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-1.514;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:105,46:0.30:151
chr19	58004346	rs2074076	G	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:54,25:0.32:79
chr19	58004931	rs2074077	A	G	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:291,121:0.29:412
chr19	58011421	rs12463137	G	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:130,50:0.28:180
chr19	58015981	rs2074061	C	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr19	58016289	rs2074062	G	T	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=6.729;MLEAC=1;MLEAF=0.500;MQ=56.99;MQRankSum=-7.132;QD=5.90;ReadPosRankSum=-0.988;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:116,62:0.35:178
chr19	58016329	rs142797348	T	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.309;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=9.601;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-9.523;QD=1.04;ReadPosRankSum=-4.787;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:154,29:0.16:183
chr19	58016474	rs150811873	T	C	3062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=47.21;MQRankSum=-4.666;QD=8.30;ReadPosRankSum=-1.480;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:206,163:0.44:369
chr19	58016479	rs148826783	T	A	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-6.299;QD=3.87;ReadPosRankSum=-1.068;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:280,104:0.27:384
chr19	58017603	rs2012431	C	T	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.862;QD=26.99;ReadPosRankSum=0.338;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr19	58017603	.	CTA	TTG	145	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=1;HapScore=2;MGOF=15;MMLQ=24;MQ=60.51;NF=5;NR=1;PP=145;QD=33.0779791437;SC=CCACCAAGCGCTAGCCCCCTC;SbPval=0.63;Source=Platypus;TC=13;TCF=11;TCR=2;TR=6;WE=58017613;WS=58017601;set=Platypus	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	58017605	rs2012426	A	G	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.793;QD=24.15;ReadPosRankSum=-0.285;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr19	58017635	rs756980	G	A	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr19	58017659	rs57412218	C	CAT	1324.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr19	58017753	rs61731281	C	A	2930.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.291;QD=21.55;ReadPosRankSum=-1.401;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:61,75:0.55:136
chr19	58017754	rs61737910	A	G	2930.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.291;QD=21.55;ReadPosRankSum=-1.574;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:61,75:0.55:136
chr19	58017758	rs55823456	G	C	2889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.348;QD=21.57;ReadPosRankSum=-1.409;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:63,71:0.53:134
chr19	58018618	rs2074064	A	G	5664.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:181,269:0.60:450
chr19	58018848	rs2066936	A	G	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=1.299;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:46,41:0.47:87
chr19	58019762	rs66526919	C	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr19	58019786	rs67448172	C	G	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-0.186;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:25,39:0.61:64
chr19	58019892	rs67054060	G	A	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.408;QD=9.08;ReadPosRankSum=1.517;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:56,56:0.50:112
chr19	58024252	rs7254394	T	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr19	58024328	rs7254526	T	C	1355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=-3.086;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:37,66:0.64:103
chr19	58024442	rs7253945	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:37,87:0.70:124
chr19	58038964	rs12461014	T	A	9109.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr19	58058536	rs1548476	A	G	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr19	58058739	rs10410631	T	C	6647.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	58117223	rs2360543	T	A	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:56,100:0.64:156
chr19	58118715	rs10715037	CT	C	1016.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.009;QD=4.94;ReadPosRankSum=-0.079;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:102,104:0.50:206
chr19	58151338	rs34418076	TG	T	5022.73	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:64,169:0.73:233
chr19	58213952	rs2074078	C	A	6113.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:202,298:0.60:500
chr19	58231702	rs117201234	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr19	58231807	rs2239986	A	G	3585.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:129,175:0.58:304
chr19	58234704	rs139593304	C	A	5792.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:163,283:0.63:446
chr19	58258466	rs60751243	G	T	7706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=1.082;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:251,366:0.59:617
chr19	58258589	rs2074081	G	A	3438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=4.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.992;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:114,165:0.59:279
chr19	58262454	rs11419013	C	CT	1049.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr19	58281192	rs74911211	T	TC	9995.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.706;QD=13.45;ReadPosRankSum=0.112;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:312,431:0.58:743
chr19	58281374	rs2285614	G	A	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:39,77:0.66:116
chr19	58288169	rs2285615	C	T	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=0.625;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:75,130:0.63:205
chr19	58291228	rs2158013	A	G	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:60,82:0.58:142
chr19	58301766	rs72530696	TG	T	9459.73	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:211,310:0.60:521
chr19	58326001	rs2303817	A	G	13515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=1033;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=0.114;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:384,633:0.62:1017
chr19	58352522	rs12981244	G	A	12186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=1.451;QD=11.29;ReadPosRankSum=2.485;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:473,606:0.56:1079
chr19	58361328	rs28374851	G	C	6310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-1.850;QD=24.18;ReadPosRankSum=-1.409;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:103,158:0.61:261
chr19	58361334	rs28577146	G	A	6432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-2.123;QD=24.00;ReadPosRankSum=-3.096;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:100,168:0.63:268
chr19	58361549	rs58754895	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr19	58370727	rs77825740	T	G	3116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=11.759;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-17.772;QD=7.95;ReadPosRankSum=1.252;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:222,170:0.43:392
chr19	58374130	rs7253130	C	T	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:47,85:0.64:132
chr19	58385954	rs10412929	T	C	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:24,59:0.71:83
chr19	58386651	rs12610589	C	A	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.809;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=2.263;QD=12.87;ReadPosRankSum=0.306;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:38,59:0.61:97
chr19	58386762	rs7252219	A	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:78,109:0.58:187
chr19	58419100	rs143399338	AGATTC	A	2944.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.245;QD=27.02;ReadPosRankSum=-0.462;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:35,74:0.68:109
chr19	58419841	rs10414704	G	T	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:117,93:0.44:210
chr19	58419874	rs10415951	T	C	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:182,135:0.43:317
chr19	58420682	rs202194085	T	C	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.730;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=5.669;MLEAC=1;MLEAF=0.500;MQ=54.35;MQRankSum=-8.043;QD=0.29;ReadPosRankSum=-9.379;SOR=1.399;set=HC	GT:AD:AF:DP	0/1:562,76:0.12:638
chr19	58420699	rs3745133	C	A	5836.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:364,300:0.45:664
chr19	58439306	rs7253514	G	A	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:76,99:0.57:175
chr19	58455381	rs257652	C	T	12429.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,489:1.00:489
chr19	58485439	rs257676	C	T	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:80,76:0.49:156
chr19	58500271	rs11880378	T	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	58514715	rs4801540	C	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	58549366	rs159870	C	G	10829.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr19	58549593	rs2241406	C	G	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr19	58570697	rs7256947	G	T	934.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.375;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=9.566;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=-3.241;QD=19.47;ReadPosRankSum=-2.352;SOR=0.207;set=HC	GT:AD:AF:DP	1/1:4,44:0.92:48
chr19	58570714	rs146738840	A	AGGCCG	680.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.74;QD=42.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	58570794	rs8110363	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	58571615	rs151015554	GGTGCCCGGCCTCTACTC	G	475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=4.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=-4.691;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr19	58572979	rs1469087	G	A	5635.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	58578578	rs2229375	C	T	16362.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr19	58579923	rs2229379	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	58596449	rs2258557	C	T	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:268,165:0.38:433
chr19	58598784	rs2260914	A	G	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	58601221	rs2547354	T	C	16923.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,666:1.00:666
chr19	58629830	rs8108978	A	T	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	58629878	rs8109275	G	T	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	58718269	rs7256349	G	A	4283.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:130,204:0.61:334
chr19	58718360	rs59557917	A	AG	4246.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	58757870	rs12972443	G	C	2010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.97;ReadPosRankSum=0.425;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:63,92:0.59:155
chr19	58774071	rs260462	A	G	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	58774223	rs34204906	GC	G	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr19	58790359	rs11666156	C	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr19	58790675	rs437229	T	C	5772.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	58790713	rs374431	G	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	58790784	rs260502	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr19	58791213	rs260500	C	A	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	58791252	rs66668551	TTA	T	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.180;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr19	58797344	rs400733	A	C	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	58797583	rs59553565	C	CT	6865.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	58806083	rs260471	T	C	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:249,119:0.32:368
chr19	58850341	rs59054150	G	C	8551.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:237,410:0.63:647
chr19	58850756	rs16988668	G	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:51,84:0.62:135
chr19	58858231	rs3214663	GC	G	1158.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:95,43:0.31:138
chr19	58858614	rs11345647	AG	A	3563.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	58858676	rs1265957	A	G	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=3.397;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.682;QD=4.98;ReadPosRankSum=-1.458;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:202,96:0.32:298
chr19	58864479	rs893184	T	C	2982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=1.545;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:300,174:0.37:474
chr19	58864867	rs2375470	A	G	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:101,95:0.48:196
chr19	58864879	rs3833872	T	TG	1708.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:77,68:0.47:145
chr19	58868480	rs12609654	G	T	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:319,209:0.40:528
chr19	58869515	rs6146577	GTCCCC	G	3680.73	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:273,194:0.42:467
chr19	58879965	rs7255489	A	G	1247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=2.982;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:165,74:0.31:239
chr19	58879976	rs7255596	C	T	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=2.064;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:135,67:0.33:202
chr19	58898436	rs731835	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	58907443	rs12611212	C	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr19	58907700	rs112710702	G	A	5159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.926;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:206,255:0.55:461
chr19	58908150	rs13343526	C	G	4485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=0.606;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:372,255:0.41:627
chr19	58945962	rs9941466	C	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:167,86:0.34:253
chr19	58966473	rs201386317	C	T	5331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=966;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.974;QD=5.63;ReadPosRankSum=0.877;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:626,321:0.34:947
chr19	58982384	rs10418774	A	G	11744.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr19	59010439	rs80330258	A	G	9229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-0.597;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:296,443:0.60:739
chr19	59010593	rs4801274	A	G	3292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-1.102;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:439,198:0.31:637
chr19	59023166	rs34415062	G	A	2582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.77;ReadPosRankSum=0.169;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:27,66:0.71:93
chr19	59023174	rs35350976	A	G	2628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=5.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.27;ReadPosRankSum=0.551;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:27,66:0.71:93
chr19	59025685	rs4801602	A	C	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	59056752	rs2305122	G	C	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.664;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:38,41:0.52:79
chr19	59058693	rs3816329	G	A	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:58,81:0.58:139
chr19	59059729	rs2305120	G	A	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:176,138:0.44:314
chr19	59061324	.	G	A	8906.77	.	AC=1;AF=0.500;AN=2;DP=687;set=Intersection	GT:AD:AF:DP	0/1:264,421:0.61:685
chr19	59067623	rs2305119	C	T	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:91,124:0.58:215
chr19	59074653	rs4756	T	C	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:116,152:0.57:268
chr20	76962	rs6111385	T	C	38110.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=1600;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.000;QD=25.63;ReadPosRankSum=2.207;SOR=0.694;set=HC	GT:AD:AF:DP	1/1:2,1485:1.00:1487
chr20	126310	rs11467417	ACC	A	12738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DB;DP=1109;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.064;QD=12.10;ReadPosRankSum=-1.387;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:686,367:0.35:1053
chr20	138004	rs6055356	G	C	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	138125	rs2298108	G	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:64,43:0.40:107
chr20	138148	rs2298109	C	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:80,52:0.39:132
chr20	138178	rs3216039	GC	G	2726.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:65,89:0.58:154
chr20	139362	rs6055460	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr20	139409	rs12624951	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:82,34:0.29:116
chr20	139456	rs12624954	G	A	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:199,99:0.33:298
chr20	139576	rs16995685	C	A	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:338,201:0.37:539
chr20	139745	rs4142304	T	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	168728	rs4813043	T	A	3032.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:108,150:0.58:258
chr20	168781	rs35089290	G	T	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,95:0.52:182
chr20	207889	rs2298149	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:70,41:0.37:111
chr20	208168	rs6110460	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr20	210061	rs13045643	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:142,75:0.35:217
chr20	238435	rs66489228	CTGGTCT	C	8477.73	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:138,214:0.61:352
chr20	238507	rs373225	A	C	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:88,121:0.58:209
chr20	238530	rs412143	T	G	2654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.910;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.895;QD=20.58;ReadPosRankSum=2.948;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:60,69:0.53:129
chr20	238540	rs416360	C	T	2666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.664;QD=23.19;ReadPosRankSum=1.071;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:46,69:0.60:115
chr20	239664	rs420525	T	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr20	239688	rs399083	G	A	2642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.03;ReadPosRankSum=0.289;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:46,64:0.58:110
chr20	239697	rs399094	G	C	2803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.92;ReadPosRankSum=-0.282;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:54,80:0.60:134
chr20	252084	rs149825796	TACACACACACAC	T	610.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr20	256727	rs3827147	T	A	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:59,86:0.59:145
chr20	257733	rs2277781	A	G	7624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-1.831;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:197,366:0.65:563
chr20	257812	rs6046375	T	C	3973.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:121,185:0.60:306
chr20	258820	rs8117412	T	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr20	258865	rs6046492	A	G	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:126,169:0.57:295
chr20	259969	rs7271033	G	C	7952.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:289,401:0.58:690
chr20	264472	rs41279018	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr20	270428	rs6035784	C	T	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:85,113:0.57:198
chr20	271135	rs3215551	G	GC	3355.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	271168	rs7263309	G	C	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.321;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:49,56:0.53:105
chr20	271204	.	A	AT	1937.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-2.282;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:55,132:0.71:187
chr20	278515	rs2223665	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr20	278687	rs5839847	CCGG	C	5443.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	278806	rs1057189	C	T	11714.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:233,527:0.69:760
chr20	278818	rs372545531	C	T	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	0/1:540,250:0.32:790
chr20	279483	rs1046560	T	C	7998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=0.411;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:291,391:0.57:682
chr20	334317	rs5839855	TC	T	41728.73	.	AC=2;AF=1.00;AN=2;DB;DP=1406;set=Intersection	GT:AD:AF:DP	1/1:0,1337:1.00:1337
chr20	340044	rs142345508	GCAC	G	892.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=-0.175;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr20	371972	rs6051637	T	C	11960.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr20	377226	rs6115830	C	T	19019.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,693:1.00:693
chr20	397928	rs6115906	C	T	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=1.567;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:133,83:0.38:216
chr20	398039	rs202094414	T	TTG	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=0.235;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr20	398278	rs11698154	G	T	4147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=4.039;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:290,216:0.43:506
chr20	442937	rs708978	C	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.82;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	488930	rs74119	C	T	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:48,91:0.65:139
chr20	590294	rs141382158	C	G	1637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.477;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-1.487;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:144,50:0.26:194
chr20	590297	rs143851183	A	G	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-1.806;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:145,50:0.26:195
chr20	590456	rs282164	A	G	11799.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr20	590542	rs2754502	CG	GC	23755.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.89;QD=44.82;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,530:1.00:530
chr20	590600	rs113965101	C	T	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:105,212:0.67:317
chr20	590900	rs183989	T	C	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:68,73:0.52:141
chr20	656057	rs6053839	C	T	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr20	656407	rs146589074	T	TGGC	297.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr20	742237	rs3746801	G	A	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-0.140;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:66,44:0.40:110
chr20	742237	.	GGT	AGC	542	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=32;NR=7;PP=542;QD=15.2684070477;SC=TTCCCGGGAGGGTCCCACAGA;SbPval=0.55;Source=Platypus;TC=100;TCF=82;TCR=18;TR=39;WE=742247;WS=742235;set=Platypus	GT:AD:AF:DP	1/0:61,39:0.39:100
chr20	742239	rs6054589	T	C	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	744050	rs8122335	A	G	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.405;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=0.064;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:80,37:0.32:117
chr20	744450	rs3746805	G	A	3088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=0.241;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:301,176:0.37:477
chr20	744662	rs3833341	A	ACAGGTCAAT	488.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr20	825678	rs538094	T	C	16632.77	.	AC=1;AF=0.500;AN=2;DB;DP=1408;set=Intersection	GT:AD:AF:DP	0/1:595,775:0.57:1370
chr20	854940	rs944110	T	C	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:311,176:0.36:487
chr20	854973	rs62641668	T	G	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:261,165:0.39:426
chr20	858841	rs869171	C	T	4327.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:266,225:0.46:491
chr20	861743	rs4816045	C	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:53,31:0.37:84
chr20	1099329	rs2072962	A	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	1099523	rs1803415	T	G	34096.77	.	AC=2;AF=1.00;AN=2;DB;DP=1322;set=Intersection	GT:AD:AF:DP	1/1:0,1307:1.00:1307
chr20	1099666	rs2072961	G	C	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr20	1108262	rs6040024	C	G	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	1115402	.	C	T	405.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr20	1115529	rs4813939	A	G	12621.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr20	1115685	.	G	A	2532.77	.	AC=1;AF=0.500;AN=2;DP=487;set=Intersection	GT:AD:AF:DP	0/1:302,150:0.33:452
chr20	1187752	rs80125338	C	G	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:300,188:0.39:488
chr20	1187878	rs79521191	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr20	1226767	.	ATTCATGTGATTAAAGC	A	797.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=5.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.936;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:44,23:0.34:67
chr20	1277099	rs6078493	G	A	10096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=1.875;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:248,460:0.65:708
chr20	1277157	rs6109320	G	C	2924.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:57,119:0.68:176
chr20	1285549	rs35467629	G	A	3571.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:367,206:0.36:573
chr20	1285933	rs3795139	G	A	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:208,221:0.52:429
chr20	1286711	rs4813082	T	C	4892.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	1291076	rs1048628	G	C	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:107,70:0.40:177
chr20	1291393	rs2273956	A	G	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	1292964	rs4814110	T	C	19487.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr20	1293247	rs2273959	C	T	37477.77	.	AC=2;AF=1.00;AN=2;DB;DP=1453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,1434:1.00:1434
chr20	1298794	rs6078610	G	A	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr20	1350672	rs6041749	T	C	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:60,133:0.69:193
chr20	1350709	rs8392	T	C	8540.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr20	1356261	rs6074549	G	C	21754.77	.	AC=2;AF=1.00;AN=2;DB;DP=836;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,834:1.00:834
chr20	1424303	rs6891	G	A	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.903;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:44,55:0.56:99
chr20	1426393	rs9575	C	T	2282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=1.288;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:105,112:0.52:217
chr20	1435905	rs6042377	T	C	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	1447563	rs28372738	C	CGATGAGGGCCCAGCA	2162.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:34,58:0.63:92
chr20	1459060	rs6042507	T	G	4100.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:128,199:0.61:327
chr20	1520883	rs2256520	T	C	5765.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr20	1532595	rs2249317	T	C	15199.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:2,598:1.00:600
chr20	1538379	rs73604175	C	T	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:75,88:0.54:163
chr20	1546742	rs2243602	T	A	9013.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr20	1546911	rs2243603	C	G	10504.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr20	1551485	rs2254458	C	T	15701.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr20	1552430	rs2253427	T	C	28811.77	.	AC=2;AF=1.00;AN=2;DB;DP=1113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=26.05;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,1106:1.00:1106
chr20	1559101	rs41275422	T	G	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:190,107:0.36:297
chr20	1585397	rs148754551	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=31.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	1592019	rs45482592	G	A	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr20	1592042	rs369003673	CCA	C	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	1592047	rs372728073	TG	T	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	1592052	.	G	A	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	1592120	rs1135201	G	T	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.82;QD=33.87;SOR=7.428;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	1592139	rs149722469	G	T	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.87;QD=44.81;SOR=8.155;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	1592141	rs141518677	T	C	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.93;QD=44.05;SOR=8.189;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	1592150	.	TGA	T	3472.73	.	AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.30;QD=48.91;SOR=8.554;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	1592152	.	AGG	GAC	2937	.	AC=2;AF=1.00;AN=2;BRF=0.61;FR=1.0000;HP=3;HapScore=1;MGOF=53;MMLQ=27;MQ=43.34;NF=49;NR=0;PP=2937;QD=20;SC=TCTCTTTGTGAGGTCTGAAAC;SbPval=1.0;Source=Platypus;TC=83;TCF=81;TCR=2;TR=49;WE=1592162;WS=1592129;set=Platypus	GT:AD:AF:DP	1/1:34,49:0.59:83
chr20	1592154	.	G	GAC	3537.73	.	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.99;QD=45.36;SOR=8.739;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	1592175	rs201724217	T	G	4623.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	1592193	rs371465078	C	T	8915.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.49;QD=27.86;SOR=1.465;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr20	1592215	rs41289057	C	G	15783.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.81;QD=25.88;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,610:1.00:610
chr20	1592265	rs45471597	A	G	23941.77	.	AC=2;AF=1.00;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	1/1:0,916:1.00:916
chr20	1592284	rs1135196	G	A	23882.77	.	AC=2;AF=1.00;AN=2;DB;DP=913;set=Intersection	GT:AD:AF:DP	1/1:1,910:1.00:911
chr20	1592312	rs72484087	T	C	20252.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:3,787:1.00:790
chr20	1592343	rs200963975	T	C	16837.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.35;QD=39.99;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,421:1.00:421
chr20	1592349	.	G	A	15126.77	.	AC=2;AF=1.00;AN=2;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.93;QD=49.92;SOR=1.876;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr20	1592352	rs139138248	A	C	13021.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.97;QD=48.05;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr20	1592355	rs145146965	T	C	11896.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.58;QD=50.20;SOR=1.887;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	1592358	rs145917713	C	T	10366.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.63;QD=46.91;SOR=1.824;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr20	1592383	rs139926854	A	ATT	2517.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.16;QD=41.27;SOR=3.657;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	1592390	rs144483378	C	T	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.79;QD=50.66;SOR=3.788;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	1592399	rs200926806	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.07;QD=46.99;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	1610790	rs3746719	G	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr20	1610812	rs3746720	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr20	1610894	rs3746721	G	A	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:112,87:0.44:199
chr20	1610918	rs34442420	T	A	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:68,90:0.57:158
chr20	1610939	rs3746722	G	A	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	1615959	rs9305125	T	C	11109.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr20	1616137	rs6034239	G	A	5326.77	.	AC=1;AF=0.500;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	0/1:428,290:0.40:718
chr20	1616206	rs6043409	A	G	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	1616816	rs71964196	GGT	G	11771.73	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:197,312:0.61:509
chr20	1616892	rs2277760	A	G	7526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=1058;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.216;QD=7.14;ReadPosRankSum=-1.241;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:638,416:0.39:1054
chr20	1617069	rs2277761	A	G	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:129,149:0.54:278
chr20	1629547	rs6110775	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	1629604	rs6074948	A	C	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.29;SOR=1.645;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	1629604	.	AAA	CAA,CAG	986	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.56;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=20;MMLQ=26;MQ=60.0;NF=71,26;NR=29,8;PP=986,500;QD=10.2077121255;SC=TGAGCACTGAAAATCACACCT;SbPval=0.54;Source=Platypus;TC=102;TCF=72;TCR=30;TR=100,34;WE=1629614;WS=1629594;set=Platypus	GT:AF:DP	0/1:0.98:102
chr20	1629606	rs6110777	A	G	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.907;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-1.376;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:89,54:0.38:143
chr20	1629906	rs6079967	C	T	7547.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:237,357:0.60:594
chr20	1895621	rs112203261	C	A	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.92;QD=46.76;SOR=2.958;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	1895630	rs111980944	T	C	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr20	1895644	rs111751479	T	C	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	1895655	rs113347998	T	C	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.15;QD=47.17;SOR=1.701;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	1895658	rs113961013	A	T	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.09;QD=46.08;SOR=1.731;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	1895667	rs114169528	A	C	6901.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.11;QD=45.11;SOR=1.548;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr20	1895668	rs114623029	C	A	6926.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.99;QD=44.98;SOR=1.564;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	1895673	rs76897346	T	C	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.81;QD=43.18;SOR=1.357;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	1895705	rs111713867	C	T	9663.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr20	1895713	rs146721721	T	TAA	9595.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr20	1895714	rs112912386	G	A	9809.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr20	1895794	rs1135192	G	A	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.54;QD=44.19;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	1895796	rs143735290	T	C	4065.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.27;QD=45.68;SOR=1.890;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	1895797	rs146490405	G	A	4001.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.18;QD=45.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	1895813	rs17855609	A	T	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.74;QD=43.03;SOR=1.963;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	1895815	rs17853846	A	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.03;QD=46.65;SOR=2.080;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	1895820	rs17855610	C	T	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.33;QD=55.03;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	1895826	rs17855611	G	A	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.45;QD=46.08;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	1895835	rs17855612	C	T	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.51;QD=48.03;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	1895842	rs17853847	T	C	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.50;QD=40.85;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	1895889	rs72620874	G	C	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.62;QD=25.09;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	1895949	rs148409797	A	AGT	2722.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.43;QD=45.38;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	1895950	.	CCT	GTC	2371	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=1;MGOF=64;MMLQ=27;MQ=42.7;NF=17;NR=18;PP=2371;QD=69.5562249961;SC=CTGTTTCAGACCTCACAAAGA;SbPval=0.5;Source=Platypus;TC=38;TCF=19;TCR=19;TR=35;WE=1895973;WS=1895947;set=Platypus	GT:AD:AF:DP	1/1:3,35:0.92:38
chr20	1895950	.	CCT	C	2722.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.69;QD=43.92;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	1895963	rs17855613	A	G	2354.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.96;QD=43.61;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	1895963	.	AAC	GAA	925	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=1;MGOF=64;MMLQ=27;MQ=41.8;NF=21;NR=15;PP=925;QD=27.1796631906;SC=CACAAAGAGAAACAACATGGA;SbPval=0.54;Source=Platypus;TC=39;TCF=23;TCR=16;TR=36;WE=1895973;WS=1895947;set=Platypus	GT:AD:AF:DP	1/1:3,36:0.92:39
chr20	1895965	rs17855614	C	A	1463.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.96;MQRankSum=-0.141;QD=27.11;ReadPosRankSum=-1.179;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:2,52:0.96:54
chr20	1895984	rs17855615	C	A	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.48;QD=43.84;SOR=1.524;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	1895990	rs17855616	G	A	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.63;QD=42.41;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	1896051	rs139878822	CCGA	C	12607.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr20	1896059	rs115287948	G	A	13175.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.79;QD=45.28;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr20	1896060	rs114499682	T	C	13175.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.82;QD=44.66;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr20	1896100	rs6136375	C	T	11344.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr20	1896244	rs6136376	A	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	1908299	rs2076552	C	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr20	1915226	rs2076554	G	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr20	2290333	rs214803	C	A	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	2290532	rs214804	T	G	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr20	2290547	rs214805	C	T	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr20	2313072	rs141856729	G	A	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:98,75:0.43:173
chr20	2361684	rs2422753	C	T	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr20	2375262	rs2076405	A	G	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	2380396	rs2076404	G	A	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	2413126	rs6036467	C	T	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr20	2442273	rs6049216	C	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	2451503	rs4815262	G	A	9497.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.062;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr20	2474081	rs4815270	T	C	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.281;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	2474136	rs371945940	GA	G	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.964;QD=0.69;ReadPosRankSum=2.524;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:368,95:0.21:463
chr20	2542669	rs7270277	C	T	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr20	2552805	rs1883981	T	A	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=1.041;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:150,77:0.34:227
chr20	2552926	rs1883980	T	C	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=-0.606;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:107,68:0.39:175
chr20	2559778	rs6083735	G	C	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:87,82:0.49:169
chr20	2572816	rs6050433	T	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=-0.281;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr20	2591005	rs1883978	A	G	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-1.149;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:61,50:0.45:111
chr20	2591232	rs6050576	C	T	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:180,110:0.38:290
chr20	2593863	rs6515646	T	C	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:176,117:0.40:293
chr20	2594190	rs10485601	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr20	2596969	rs4621228	T	A	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr20	2596998	rs4481063	G	A	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr20	2597073	rs4544508	T	G	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr20	2597978	rs4815428	G	A	22376.77	.	AC=2;AF=1.00;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	1/1:0,842:1.00:842
chr20	2598019	rs6083866	C	T	15389.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr20	2616556	rs910271	T	C	6240.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr20	2616679	rs2422808	C	G	6064.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr20	2617993	rs6083914	C	T	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	2618094	rs6037181	G	A	9911.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:1,382:1.00:383
chr20	2618140	rs6083915	T	C	12640.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr20	2618308	rs6050771	C	T	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	2621998	rs6050798	T	C	4390.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:108,213:0.66:321
chr20	2633234	rs6115305	T	G	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	2633244	rs4815467	A	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.83;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	2633380	rs6115306	G	A	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr20	2633398	.	GGCCTGC	G	6596.73	.	AC=2;AF=1.00;AN=2;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr20	2633842	rs73070665	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	2633936	rs2073194	T	C	8737.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=0.628;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:2,336:0.99:338
chr20	2634167	rs6050911	C	A	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	2636218	rs742842	C	A	11626.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr20	2637071	rs8958	T	C	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	2638579	rs6753	T	C	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=24.01;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr20	2638882	rs5856	T	C	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr20	2639570	rs6037255	G	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	2640102	rs2235955	G	A	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr20	2644407	rs2073193	C	G	10063.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr20	2673644	.	GGGCGCT	G	457.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.61;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	2686431	.	C	CCA	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=3.155;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.307;QD=8.99;ReadPosRankSum=-1.949;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr20	2732532	rs114139830	G	C	8971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=709;ExcessHet=3.0103;FS=5.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-2.182;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:269,434:0.62:703
chr20	2732902	rs2235813	C	G	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr20	2732934	rs60014511	G	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.072;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr20	2732951	rs149223102	C	T	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=1.033;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,32:0.71:45
chr20	2739583	rs2073125	T	C	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:304,192:0.39:496
chr20	2777459	rs1985525	T	C	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	2777828	rs742707	G	T	8829.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr20	2778075	rs127076	T	C	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	2779257	rs215541	G	C	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	2797015	rs215561	G	A	12715.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.74;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr20	2797137	rs11469869	GCC	G,GC	5751.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=4.609;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.598;QD=22.64;ReadPosRankSum=-0.243;SOR=0.311;set=HC	GT:AD:AF:DP	1/2:20,62,172:0.24,0.68:254
chr20	2845214	rs61729230	G	A	6764.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:240,327:0.58:567
chr20	3063587	rs200820983	G	GC	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.381;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:61,26:0.30:87
chr20	3065111	rs148045404	A	G	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:356,199:0.36:555
chr20	3147024	rs7260750	G	A	10290.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr20	3147762	rs6051612	A	G	6120.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chr20	3171628	rs2295546	G	A	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	3172246	rs2295547	A	C	5095.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr20	3175556	rs2295549	C	G	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	3175742	rs2295551	A	G	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	3176009	rs2295552	T	C	10828.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr20	3176072	rs7263489	C	T	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chr20	3181262	rs73573863	C	T	700.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr20	3184134	rs2295553	C	T	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=2.066;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:78,35:0.31:113
chr20	3190039	rs45620433	C	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr20	3193978	rs8362	G	A	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=1.270;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:146,93:0.39:239
chr20	3199373	rs2422861	G	A	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.90;SOR=2.119;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	3203950	rs2236206	T	A	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:247,185:0.43:432
chr20	3204084	rs9101	G	A	3571.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:293,191:0.39:484
chr20	3209371	rs2281575	G	A	4933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=0.091;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:411,265:0.39:676
chr20	3210692	rs6139039	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr20	3211064	rs3810561	A	C	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	3211719	rs3803953	T	G	5818.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:460,306:0.40:766
chr20	3212222	rs147477986	T	TG	5619.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:99,142:0.59:241
chr20	3212223	.	A	T	5622.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=1.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.43;ReadPosRankSum=-0.409;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:99,141:0.59:240
chr20	3212223	.	AGA	TGG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=27;MQ=60.03;NF=31;NR=45;PP=2944;QD=20;SC=AGTCACCCCTAGAAACAGAGG;SbPval=0.52;Source=Platypus;TC=153;TCF=62;TCR=91;TR=76;WE=3212233;WS=3212212;set=Platypus	GT:AD:AF:DP	0/1:77,76:0.50:153
chr20	3212225	.	A	G	5594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.578;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.91;ReadPosRankSum=-0.863;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:95,139:0.59:234
chr20	3214020	rs2144771	G	T	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr20	3214126	rs3803955	C	T	4559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=864;ExcessHet=3.0103;FS=4.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=1.494;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:539,270:0.33:809
chr20	3214819	rs3827075	T	G	12081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=986;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=1.947;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:383,590:0.61:973
chr20	3215049	rs3842433	T	TCCAGCCC	2352.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:37,60:0.62:97
chr20	3215548	rs3803957	C	A	9636.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:359,478:0.57:837
chr20	3218355	rs3827076	C	G	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:79,124:0.61:203
chr20	3218634	rs3810562	G	C	4590.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:152,227:0.60:379
chr20	3219692	rs6084314	C	T	3631.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:118,169:0.59:287
chr20	3219894	rs6107260	A	G	2218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=0.559;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:63,102:0.62:165
chr20	3236015	rs1569942	A	G	7831.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr20	3245219	rs72168825	C	CT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=0.259;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr20	3245276	rs6051694	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr20	3275377	rs2281506	G	C	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.740;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:28,50:0.64:78
chr20	3285126	rs2254916	A	T	3916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=1.979;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:114,195:0.63:309
chr20	3285140	rs2422864	T	C	7649.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr20	3298881	rs59462924	CAA	C	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.629;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr20	3311438	rs34084211	C	CTT	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.499;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr20	3324487	.	CGT	C	126.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr20	3355567	rs2208030	T	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:73,59:0.45:132
chr20	3541633	rs235577	A	G	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	3557342	rs11472378	G	GTCTGTCTGTCTATCTATCTA	282.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr20	3564672	rs235540	C	T	8107.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr20	3564772	rs170976	T	A	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	3565546	rs235538	C	G	11874.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr20	3575248	rs235532	G	C	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	3605059	rs235519	A	G	5103.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:119,231:0.66:350
chr20	3624704	rs2246799	G	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.213;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:87,38:0.30:125
chr20	3624830	rs2246808	G	A	4546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=773;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-0.549;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:502,268:0.35:770
chr20	3640467	rs635674	C	T	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	3640499	rs679393	C	T	3424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.43;ReadPosRankSum=-0.413;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:90,165:0.65:255
chr20	3641542	rs58634535	G	A	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-0.042;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:64,57:0.47:121
chr20	3641881	rs6084431	C	T	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:360,202:0.36:562
chr20	3649713	rs628965	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=0.058;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr20	3649721	rs628977	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr20	3650066	rs630712	C	A	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:94,63:0.40:157
chr20	3650127	rs2280089	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr20	3650205	rs2280090	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr20	3650234	rs2280091	A	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:112,90:0.45:202
chr20	3651742	rs528557	C	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:148,65:0.31:213
chr20	3653149	rs3918395	C	A	11569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=1555;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-1.086;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:898,641:0.42:1539
chr20	3654433	rs2271511	C	T	3859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=1.371;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:393,220:0.36:613
chr20	3655085	rs511898	C	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr20	3657803	rs568251	AT	GA	7023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.046;ClippingRankSum=0.000;DB;DP=598;ExcessHet=3.0103;FS=0.562;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-0.483;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:377,198:0.34:575
chr20	3670061	rs3746634	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr20	3671891	rs3859664	G	A	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr20	3672836	rs910653	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=1.124;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr20	3673815	rs2474436	A	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:135,53:0.28:188
chr20	3674821	rs59383643	G	GAC,GACAC	1144.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.537;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.87;MQRankSum=-0.492;QD=13.79;ReadPosRankSum=-0.386;SOR=0.223;set=HC	GT:AD:AF:DP	1/2:25,30,28:0.36,0.34:83
chr20	3675333	rs3746638	G	A	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:168,131:0.44:299
chr20	3675498	rs709012	T	G	4792.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:508,282:0.36:790
chr20	3677095	rs11471725	T	TGCTG	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.34;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr20	3677357	rs501538	T	C	4247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.425;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:357,236:0.40:593
chr20	3677736	rs673114	T	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:132,59:0.31:191
chr20	3682011	rs1018493	G	A	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=2.462;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:175,117:0.40:292
chr20	3682149	rs13037869	G	A	4316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=0.183;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:391,244:0.38:635
chr20	3682275	rs1018492	A	G	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:87,58:0.40:145
chr20	3684022	rs611847	A	G	4497.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:366,245:0.40:611
chr20	3684729	rs625372	T	C	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:84,66:0.44:150
chr20	3686436	rs6037651	C	T	3418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=2.402;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:336,195:0.37:531
chr20	3721456	rs3827077	C	T	9765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=913;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=0.937;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:409,485:0.54:894
chr20	3723091	rs611073	A	G	9493.73	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr20	3730524	rs62206555	G	A	8098.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:277,390:0.58:667
chr20	3732633	rs541760	C	T	9321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=1390;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=0.736;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:820,526:0.39:1346
chr20	3734386	rs9171	T	C	11914.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.052;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=-0.069;QD=25.19;ReadPosRankSum=1.627;SOR=1.120;set=HC	GT:AD:AF:DP	1/1:1,472:1.00:473
chr20	3734514	rs2295340	T	C	2429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.268;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:214,139:0.39:353
chr20	3740620	rs11470482	GCA	G	6129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.002;QD=7.72;ReadPosRankSum=1.554;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:464,330:0.42:794
chr20	3765655	rs149525468	G	C	11407.77	.	AC=1;AF=0.500;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	0/1:250,543:0.68:793
chr20	3767121	.	TGGGGCCCATCCCGGCGCGCCCCCCGCCCCGGGGCCCGGCGCCGCCGCCGCCGCCCCGGGGCGG	T	325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=25.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.153;SOR=3.500;set=HC	GT:AD:AF:DP	0/1:192,21:0.10:213
chr20	3767677	.	G	GT	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.313;QD=2.93;ReadPosRankSum=0.711;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr20	3783649	rs592687	G	C	22119.77	.	AC=2;AF=1.00;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	1/1:0,861:1.00:861
chr20	3783939	rs2474433	G	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:70,59:0.46:129
chr20	3843027	rs7262903	C	A	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:161,157:0.49:318
chr20	3846397	rs7269320	C	T	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:124,83:0.40:207
chr20	3846843	rs3746660	C	T	7624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330;ClippingRankSum=0.000;DB;DP=644;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-0.006;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:264,371:0.58:635
chr20	3870124	rs3737084	G	C	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr20	3897559	.	T	TTCCCCC	7166.73	.	AC=1;AF=0.500;AN=2;DP=541;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:326,189:0.37:515
chr20	3915885	rs241606	A	C	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=2.258;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:47,36:0.43:83
chr20	3954789	rs2143236	T	A	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	4053254	rs6139288	A	G	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	4055656	rs6139292	C	A	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	4155948	rs1741315	G	A	8185.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:334,412:0.55:746
chr20	4162411	rs1124983	T	C	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:47,77:0.62:124
chr20	4163302	rs1051904	A	G	12888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=1062;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-1.147;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:418,625:0.60:1043
chr20	4164283	rs1741327	A	G	4269.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:189,209:0.53:398
chr20	4202802	rs835873	A	G	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:299,174:0.37:473
chr20	4228735	rs35105284	C	T	13608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=1122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.531;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:444,655:0.60:1099
chr20	4229514	rs184418609	T	C	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-0.529;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr20	4680251	rs1799990	A	G	14424.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr20	4705718	rs2245220	C	T	4986.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:203,242:0.54:445
chr20	4705756	rs2756263	T	C	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:96,108:0.53:204
chr20	4768136	rs55900827	T	C	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	4768475	rs111533115	A	AAGGGACT	1428.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr20	4770440	rs2422992	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	4771336	rs8122874	G	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr20	4776659	rs4549182	G	A	4656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.737;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:166,229:0.58:395
chr20	4837929	rs34817640	TACAC	T	145.74	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.82;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr20	4880132	rs71993570	AGCTCAATGCCTTCTGC	A	1708.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	4880308	rs1776964	G	A	8363.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr20	5099636	rs25406	G	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	5149057	.	T	TC	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.706;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.343;SOR=0.092;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr20	5149064	rs6116671	A	C	401.88	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=0.000;QD=16.08;ReadPosRankSum=1.635;SOR=2.004;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr20	5149065	rs6116672	A	C	131.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.640;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=6.576;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-1.156;SOR=3.293;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr20	5149085	rs11287231	GA	G	498.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;MQRankSum=0.000;QD=14.67;ReadPosRankSum=2.088;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:2,32:0.94:34
chr20	5159344	rs2295508	C	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	5169877	rs6038087	A	G	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	5261029	rs6038114	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	5261132	rs6038115	G	A	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.34;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr20	5261161	rs150894323	ACT	A	5550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.890;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.328;QD=19.01;ReadPosRankSum=-1.330;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:136,156:0.53:292
chr20	5261206	rs4553880	T	C	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	5282619	rs3746681	A	T	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr20	5283256	rs3746682	C	G	14524.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr20	5283316	rs3746683	G	C	4648.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:193,232:0.55:425
chr20	5283376	rs3746684	G	A	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:96,72:0.43:168
chr20	5294496	rs8116897	C	T	2200.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:60,97:0.62:157
chr20	5454400	rs606389	A	T	7475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=736;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=53.62;MQRankSum=-24.724;QD=10.16;ReadPosRankSum=4.390;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:353,383:0.52:736
chr20	5454686	rs1060236	A	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr20	5482307	rs6053447	G	A	2991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-0.431;QD=13.54;ReadPosRankSum=1.108;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:85,136:0.62:221
chr20	5548081	rs4815840	T	C	1837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-1.954;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:116,99:0.46:215
chr20	5548208	rs11475275	TA	T	128.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=14.30;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	5551034	rs1056244	G	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.92;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	5554689	rs2295371	T	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr20	5556512	rs2273373	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr20	5556743	rs151308594	GTA	G	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr20	5556753	.	AT	A	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.633;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr20	5564774	rs6053517	T	C	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	5574134	rs1983694	T	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	5584843	rs2273375	G	A	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.43;ReadPosRankSum=-1.248;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr20	5737643	rs78199174	G	A	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:55,102:0.65:157
chr20	5752917	rs237420	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:53,71:0.57:124
chr20	5753579	rs237422	C	T	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:109,113:0.51:222
chr20	5753733	rs77420900	C	G	3126.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:103,148:0.59:251
chr20	5843812	rs1699233	T	C	7947.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr20	5844121	rs1699232	CA	TG	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;JOINED;set=Intersection	GT:AD:AF:DP	0/1:95,45:0.32:140
chr20	5897362	rs236146	G	A	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:141,96:0.41:237
chr20	5903067	rs6085324	T	A	5149.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:318,274:0.46:592
chr20	5903323	rs910122	G	A	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:169,73:0.30:242
chr20	5903517	rs236151	A	G	4098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=2.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-1.032;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:412,254:0.38:666
chr20	5903848	rs236152	C	G	3604.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:319,194:0.38:513
chr20	5903894	rs236153	A	G	2940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.480;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:302,174:0.37:476
chr20	5904040	rs742711	G	A	2307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=2.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.122;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:200,132:0.40:332
chr20	5904742	.	A	G	1778.77	.	AC=1;AF=0.500;AN=2;DP=148;set=Intersection	GT:AD:AF:DP	0/1:58,87:0.60:145
chr20	5905550	rs236155	G	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=0.497;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:49,38:0.44:87
chr20	5922083	.	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.450;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:52,11:0.17:63
chr20	5935385	rs236114	T	C	8307.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr20	5948706	rs236100	A	G	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr20	5948712	rs236101	C	T	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=1.192;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	5975380	rs11422423	T	TA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-0.091;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr20	5990723	rs71182113	A	AT	295.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=1.342;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr20	6011882	rs2423132	G	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	6033004	rs6117050	G	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	6033025	rs1884643	T	C	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	6033628	rs751681	T	G	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	6064554	rs753929	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=1.375;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr20	6064635	rs753928	G	A	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-1.380;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:138,91:0.40:229
chr20	6064710	rs753927	A	G	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:223,142:0.39:365
chr20	6064839	rs2232077	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr20	6065729	rs2232074	C	T	5781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=1.250;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:258,156:0.38:414
chr20	6065731	rs2232073	T	C	5781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=1.118;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:260,158:0.38:418
chr20	6091175	rs11087717	T	G	1450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-1.220;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr20	6091183	rs11087718	T	C	1434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.16;ReadPosRankSum=-2.369;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:43,36:0.46:79
chr20	6093177	rs16991866	A	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:114,61:0.35:175
chr20	6096632	rs1056141	G	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:87,43:0.33:130
chr20	6100002	rs6038363	C	A	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	6100088	rs10373	A	G	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=1.932;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:188,92:0.33:280
chr20	6100230	rs2273423	A	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr20	6751034	rs1049007	A	G	35834.77	.	AC=2;AF=1.00;AN=2;DB;DP=1391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,1354:1.00:1354
chr20	6759115	rs235768	A	T	11412.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr20	6759758	.	AAT	A	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.964;QD=1.21;ReadPosRankSum=-1.422;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr20	7967980	rs17425725	G	C	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.254;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:137,70:0.34:207
chr20	7980390	rs1012891	C	T	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:208,108:0.34:316
chr20	7999537	rs2294247	C	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:96,58:0.38:154
chr20	8130943	rs16994453	C	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-2.761;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:58,21:0.27:79
chr20	8628696	rs2235947	G	A	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:168,196:0.54:364
chr20	8637727	rs6140670	G	A	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-0.539;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:38,28:0.42:66
chr20	8639443	rs2076640	T	C	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:63,94:0.60:157
chr20	8639474	rs2076639	C	A	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr20	8665502	rs61201694	GA	G	1011.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=3.367;QD=5.62;ReadPosRankSum=0.693;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:83,97:0.54:180
chr20	8678446	rs2295179	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr20	8696722	rs2076690	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr20	8698565	rs6039243	T	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr20	8703145	rs6086563	C	G	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr20	8705496	rs6056043	A	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	8708166	rs17446441	A	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:23,50:0.68:73
chr20	8713842	rs993670	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	8719777	rs6039246	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr20	8731580	rs10653378	C	CT	1058.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-1.036;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,65:0.69:94
chr20	8731631	rs202097177	G	GGAGTGCA	382.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr20	8737734	rs2076413	G	A	8478.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:306,413:0.57:719
chr20	8741027	rs2064286	C	T	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:98,49:0.33:147
chr20	8741247	rs3886935	C	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=2.007;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	8755243	rs2235613	T	C	9445.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr20	8769180	rs2327089	C	T	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr20	8769423	rs2076411	T	C	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.088;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=0.485;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr20	8770108	rs4633993	A	C	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	8770130	rs2327090	A	G	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	8770282	rs6039269	G	A	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:204,134:0.40:338
chr20	8770318	rs4816086	A	G	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:90,123:0.58:213
chr20	8770822	rs2294597	C	T	3226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=-0.164;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:84,157:0.65:241
chr20	8770932	rs2294598	A	C	2608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=5.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-1.681;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:78,126:0.62:204
chr20	8773155	rs6056118	C	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:52,28:0.35:80
chr20	8773295	rs6056119	T	C	15901.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=-1.637;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:2,635:1.00:637
chr20	8782901	rs6056128	G	C	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr20	8862157	rs141768696	A	AAGTT	1897.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	9288522	rs6077510	G	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	9318847	rs34265063	G	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr20	9364799	rs2076234	A	G	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:155,67:0.30:222
chr20	9368102	rs7265290	A	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-2.605;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:50,22:0.31:72
chr20	9370506	rs139716774	G	GT	228.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr20	9374341	rs34305936	A	T	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:141,89:0.39:230
chr20	9453567	rs2206389	T	C	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	9560961	rs201331261	T	C	5901.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:210,282:0.57:492
chr20	9625003	rs4816157	G	A	5272.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr20	10023689	rs4813909	G	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	10273694	.	CT	C	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.461;QD=0.89;ReadPosRankSum=-0.212;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr20	10438780	rs6104617	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	10439002	rs6039947	T	A	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	10439037	rs6039948	A	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	10603326	rs73075324	A	G	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr20	10603750	rs6077853	G	A	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:90,167:0.65:257
chr20	10620275	rs1051421	G	A	4202.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:305,228:0.43:533
chr20	10620386	rs1051419	A	G	11292.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:2,440:1.00:442
chr20	10621305	rs6074164	A	C	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr20	10622080	rs3215563	CA	C,CAA	2401.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=148;set=Intersection	GT:AF:DP	1/2:0.31,0.66:145
chr20	10624924	.	TCACACACACACA	T,TCACACACACA	2862.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.11;ReadPosRankSum=2.363;SOR=1.154;set=HC	GT:AD:AF:DP	1/2:5,54,55:0.47,0.48:114
chr20	10624928	.	A	T	732.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=125;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr20	10624930	rs368807351	A	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.453;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:107,17:0.14:124
chr20	10624938	.	A	T	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=2.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=0.800;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:94,43:0.31:137
chr20	10633237	rs1131695	G	A	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:188,118:0.39:306
chr20	10633313	rs6040055	T	C	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr20	10653739	rs62185096	G	A	4849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-0.526;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:143,224:0.61:367
chr20	11790885	rs3036550	C	CTT	840.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr20	11791008	rs803665	C	T	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	11791094	rs803664	G	A	1652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.136;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:60,81:0.57:141
chr20	11791211	rs803663	T	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.19;ReadPosRankSum=-0.431;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr20	11830180	rs33956420	CT	C	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.015;QD=10.10;ReadPosRankSum=-0.699;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr20	11903654	rs35364034	G	A	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:318,191:0.38:509
chr20	12989901	rs3761896	T	C	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	12990044	rs3761895	T	C	8233.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr20	12990057	rs3761894	T	A	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	13029764	rs1431433	A	C	14160.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr20	13029790	rs6078899	C	T	11882.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,466:1.00:466
chr20	13029862	rs919604	C	T	8304.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr20	13029920	rs934335	C	G	9933.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr20	13055258	rs6131426	C	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr20	13055267	rs150837910	G	GA	344.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr20	13060220	rs8119959	G	A	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:66,101:0.60:167
chr20	13060331	rs8120012	G	A	4418.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:147,213:0.59:360
chr20	13073963	rs1030561	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr20	13074235	rs708937	G	A	9718.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.59;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr20	13074235	.	GTGTATTTT	ATGTATTTA,ATGTATTTT	1158	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=27;MQ=59.95;NF=32,68;NR=51,94;PP=1158,944;QD=14.5959984923;SC=GTGAGTATCAGTGTATTTTCT;SbPval=0.69;Source=Platypus;TC=162;TCF=68;TCR=94;TR=83,162;WE=13074251;WS=13074225;set=Platypus	GT:AF:DP	0/1:0.51:162
chr20	13074243	rs1011290	T	A	2679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.075;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:117,131:0.53:248
chr20	13090745	rs2236126	G	C	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:58,93:0.62:151
chr20	13134931	rs2073303	C	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr20	13260252	rs911642	C	T	2299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-0.622;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:68,108:0.61:176
chr20	13269248	rs3827705	C	T	8201.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:272,398:0.59:670
chr20	13269438	rs34117863	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-2.556;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr20	13464030	rs2273480	C	A	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr20	13509263	rs3761890	G	A	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	13561632	rs34179122	T	TA,TAA	3098.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.387;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.67;MQRankSum=0.834;QD=20.39;ReadPosRankSum=-0.181;SOR=1.009;set=HC	GT:AD:AF:DP	1/2:8,35,109:0.23,0.72:152
chr20	13695680	rs6110019	C	T	7016.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr20	13695824	.	C	CA	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-1.935;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr20	13698006	rs4239710	T	C	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr20	13743298	rs754796	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	13747441	rs3180370	A	G	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	13750448	rs35589194	C	CA	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.94;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	13755728	rs67609153	CA	C	389.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=-2.260;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr20	13763896	rs28372964	C	CATTA	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr20	13767939	.	G	A	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DP=617;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.291;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:521,89:0.15:610
chr20	13769127	rs6042362	A	G	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	13782409	rs1015517	A	G	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	13845987	rs761811	C	T	6589.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr20	13846191	rs761812	A	G	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:235,147:0.38:382
chr20	13847420	rs660710	A	G	13233.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr20	13856558	rs73085418	G	A	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:66,107:0.62:173
chr20	13868745	rs243910	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	13895660	rs17191270	G	C	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=-0.017;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr20	14306953	rs6079391	G	T	8798.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr20	14830453	rs438632	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,41:0.42:98
chr20	14830596	rs6079581	C	G	2486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-1.273;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:260,147:0.36:407
chr20	15480226	rs2180526	T	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr20	15480308	rs2145014	G	T	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr20	15480548	rs2145015	T	A	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:57,73:0.56:130
chr20	15874227	rs8118541	A	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr20	15874325	rs932501	A	G	4405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.897;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=0.165;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:221,220:0.50:441
chr20	15874488	rs6135591	G	A	5199.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:128,241:0.65:369
chr20	15874715	rs6034319	T	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr20	15948326	rs58035572	GAAA	G	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.613;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.786;QD=16.99;ReadPosRankSum=2.010;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr20	15967327	rs34675181	A	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr20	15967390	rs41275442	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr20	15967533	rs6043660	G	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=1.222;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr20	16021720	rs6135652	C	T	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	16025192	rs11482445	C	CT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=4.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.920;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:117,31:0.21:148
chr20	16025289	rs80044408	G	T	6277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.356;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:240,312:0.57:552
chr20	16223808	rs4814463	C	T	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=0.785;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:132,90:0.41:222
chr20	16223865	rs2144897	T	C	2314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-0.305;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:188,130:0.41:318
chr20	16223922	rs1541065	T	C	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-0.609;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:135,100:0.43:235
chr20	16223957	rs1000121	T	C	1579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-0.989;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:128,87:0.40:215
chr20	16224066	rs2144898	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr20	16352234	.	CA	C	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.326;QD=2.16;ReadPosRankSum=-0.848;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:76,40:0.34:116
chr20	16362173	rs11306679	CA	C	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.732;QD=1.62;ReadPosRankSum=0.804;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:76,39:0.34:115
chr20	16486698	rs2295115	G	A	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:122,80:0.40:202
chr20	16492242	rs6135772	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr20	16493533	rs6135775	T	C	2035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=1.252;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:244,124:0.34:368
chr20	16493580	rs6135776	A	G	3046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=-2.355;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:258,168:0.39:426
chr20	16496362	rs6044046	T	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:117,71:0.38:188
chr20	16496415	rs6131837	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr20	16506939	rs6034517	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr20	16506971	rs6044072	A	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.397;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=-0.556;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr20	16553701	rs6135800	G	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr20	16553754	rs78834911	G	A	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr20	16554067	rs4814510	A	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	16712280	rs6111262	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr20	16713144	rs4814548	T	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr20	16729262	rs6080387	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr20	16729654	rs10627353	A	AAGATG	1266.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:64,36:0.36:100
chr20	16730464	rs6075100	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr20	16730479	rs6075101	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.528;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr20	16730522	rs6135878	T	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr20	17389830	rs2217182	T	C	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	17434581	rs16999198	A	G	5589.77	.	AC=1;AF=0.500;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	0/1:522,310:0.37:832
chr20	17436895	rs2021789	G	A	5385.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.93;ReadPosRankSum=0.271;SOR=0.469;set=HC	GT:AD:AF:DP	1/1:4,212:0.98:216
chr20	17462150	rs11907226	C	T	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	17477865	rs6136120	C	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	17479730	rs6111549	T	C	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:67,112:0.63:179
chr20	17492755	rs1559956	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:63,42:0.40:105
chr20	17539168	rs6044883	A	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	17594714	rs35586556	GC	G	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	17595329	rs7261001	G	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	17596731	rs2236250	C	T	16564.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.13;ReadPosRankSum=0.177;SOR=0.553;set=HC	GT:AD:AF:DP	1/1:1,633:1.00:634
chr20	17597331	rs911347	C	T	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	17597361	rs911348	A	G	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	17599214	rs2328181	T	C	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr20	17600357	rs11960	G	A	23486.77	.	AC=2;AF=1.00;AN=2;DB;DP=950;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,934:1.00:934
chr20	17602028	rs2236253	T	C	7881.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr20	17605016	rs2236254	T	C	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	17605240	rs6034867	A	T	8844.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr20	17606372	rs2295672	T	C	11383.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:1,434:1.00:435
chr20	17610729	rs6044917	T	C	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	17617531	rs6044923	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	17622429	rs2236255	A	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr20	17622676	rs41276398	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr20	17640009	rs13040917	A	C	25779.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.92;QD=35.96;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,717:1.00:717
chr20	17640013	rs201048785	T	C	8242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=748;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-7.397;QD=11.32;ReadPosRankSum=1.227;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:322,406:0.56:728
chr20	17674451	rs6080781	G	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	17705677	rs4814640	A	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	17705793	rs1133096	T	C	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:121,161:0.57:282
chr20	17927980	rs78163990	G	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr20	17933368	rs145799736	T	TG	3484.73	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:173,118:0.41:291
chr20	17933511	rs910900	C	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr20	17937801	rs3790301	T	C	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=0.776;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:38,27:0.42:65
chr20	17956197	.	CA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.356;QD=1.96;ReadPosRankSum=-0.276;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr20	18005600	rs2281543	A	C	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:180,113:0.39:293
chr20	18022171	rs1571431	C	T	8756.77	.	AC=1;AF=0.500;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	0/1:338,431:0.56:769
chr20	18118740	rs1205190	T	G	18295.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.45;ReadPosRankSum=-1.984;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:2,717:1.00:719
chr20	18118740	.	TCGACCTGG	GCGACCTGG,GCGACCTGT	2599	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.69;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=8;MMLQ=14;MQ=60.0;NF=157,58;NR=142,51;PP=2599,1352;QD=20;SC=GCGCGCGGCGTCGACCTGGGG;SbPval=0.57;Source=Platypus;TC=300;TCF=157;TCR=143;TR=299,109;WE=18118756;WS=18118716;set=Platypus	GT:AF:DP	0/1:1.00:300
chr20	18118748	.	G	T	4327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DP=762;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.242;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:496,261:0.34:757
chr20	18123084	rs78016265	CT	C	1330.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	18123088	.	T	C	466.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr20	18142564	rs3828013	A	G	4020.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:160,195:0.55:355
chr20	18142924	rs3748511	G	A	7575.77	.	AC=1;AF=0.500;AN=2;DB;DP=1056;set=Intersection	GT:AD:AF:DP	0/1:638,406:0.39:1044
chr20	18143117	rs1205193	T	G	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr20	18143355	rs1205194	C	T	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:199,101:0.34:300
chr20	18165136	rs373697126	T	G	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-0.307;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr20	18167977	rs2747404	T	C	11015.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr20	18296072	rs1033545	T	A	9621.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr20	18361603	rs1883938	T	C	16664.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr20	18365621	.	T	G	629.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr20	18393312	rs6075337	C	G	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	18393499	rs6075338	C	T	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	18395988	rs6035037	C	T	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr20	18414356	rs6035042	A	G	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,274:0.99:276
chr20	18429497	rs6081147	T	C	471.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.716;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.973;MLEAC=2;MLEAF=1.000;MQ=59.92;MQRankSum=0.000;QD=21.44;ReadPosRankSum=-0.917;SOR=1.700;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr20	18432690	rs2424196	T	A	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	18445963	rs6035051	A	G	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:150,223:0.60:373
chr20	18446022	rs74875927	C	A	706.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.225;QD=4.68;ReadPosRankSum=3.449;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:108,43:0.28:151
chr20	18446022	.	CTC	ATA	1104	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=3;MGOF=122;MMLQ=26;MQ=60.19;NF=13;NR=20;PP=1104;QD=35.0747840867;SC=CTCTCTCTCTCTCTATATATA;SbPval=0.66;Source=Platypus;TC=109;TCF=46;TCR=63;TR=33;WE=18446033;WS=18446012;set=Platypus	GT:AD:AF:DP	1/0:76,33:0.30:109
chr20	18446024	rs6111974	C	A	1904.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=-0.971;QD=13.14;ReadPosRankSum=1.988;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:86,59:0.41:145
chr20	18446050	rs111987137	A	ATGTGCACTTATAGC	3442.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	18448079	rs1474974	C	A	6723.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr20	18449845	.	G	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.35;ReadPosRankSum=-1.036;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr20	18460614	rs6035056	A	T	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr20	18460641	rs6081160	G	A	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:110,129:0.54:239
chr20	18461237	rs57962043	GT	G	465.06	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:4,30:0.88:34
chr20	18462421	rs1055171	A	G	7148.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr20	18462492	rs4813332	A	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	18462518	rs6111983	C	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	18464110	rs3827965	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	18470664	rs3748450	A	G	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	18470980	rs2424217	A	G	16372.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr20	18474566	rs17734238	C	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr20	18476288	.	GAA	G	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=-0.670;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr20	18477614	rs2247746	A	G	10412.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr20	18477870	rs2247757	T	A	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr20	18505403	rs3762200	G	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,46:0.98:47
chr20	18505563	.	C	CT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DP=335;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=0.157;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:270,50:0.16:320
chr20	18506616	rs911115	T	C	2702.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.71;ReadPosRankSum=0.631;SOR=1.477;set=HC	GT:AD:AF:DP	1/1:2,86:0.98:88
chr20	18506617	rs1555353	G	A	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=0.352;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:56,32:0.36:88
chr20	18511456	rs6081189	A	G	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	18511458	.	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=0.845;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr20	18511504	rs3762201	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	18513372	rs17807673	C	T	5212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-2.400;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:163,250:0.61:413
chr20	18523864	rs2295557	C	T	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	18529233	rs3736775	T	A	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:85,160:0.65:245
chr20	18535982	rs1555363	A	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	18548293	rs11475009	TC	T	5341.73	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:363,213:0.37:576
chr20	18548425	rs6075366	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr20	18549848	rs11475239	CT	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=6.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-0.427;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr20	18568902	rs6075371	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.72;ReadPosRankSum=-0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr20	18568918	rs6075372	A	G	85.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	18576912	rs1884875	C	G	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	18576980	rs6081237	A	G	147.56	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr20	18608945	rs3818220	G	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.296;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr20	18806046	rs6136525	C	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-1.074;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:102,40:0.28:142
chr20	18810705	rs6136530	C	T	5293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=913;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=0.030;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:585,315:0.35:900
chr20	19261623	rs1569767	G	A	9732.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr20	19261922	rs3790176	G	A	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	19560555	rs11087288	GA	G	4700.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:106,138:0.57:244
chr20	19560664	rs3790261	G	A	5710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=0.544;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:169,274:0.62:443
chr20	19565671	rs17293432	G	A	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:363,201:0.36:564
chr20	19634732	rs3790278	G	A	3659.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:114,180:0.61:294
chr20	19634747	rs3790279	T	C	3892.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:125,190:0.60:315
chr20	19646436	.	CGTGTGTGT	C	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.733;QD=20.15;ReadPosRankSum=-2.818;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr20	19654452	rs11468498	GTAA	G	2627.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr20	19673862	rs11481303	A	AT	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=1.293;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr20	19867256	rs11362637	CT	C	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=1.072;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,37:0.65:57
chr20	19915611	.	T	TA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=2.883;QD=1.18;ReadPosRankSum=0.488;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr20	19941538	rs199562	A	T	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr20	19945493	rs6046489	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr20	19951660	rs3803982	C	T	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:10,53:0.84:63
chr20	19970705	rs2076584	C	T	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:167,97:0.37:264
chr20	19970888	rs35151304	G	A	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:185,128:0.41:313
chr20	20032998	rs2255255	T	C	14129.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr20	20033137	rs2255258	T	A	26674.77	.	AC=2;AF=1.00;AN=2;DB;DP=1028;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,1020:1.00:1020
chr20	20033242	rs2273057	A	T	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr20	20033319	rs2273058	A	G	7412.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr20	20033367	rs7508949	C	G	9620.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.42;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr20	20033380	rs3817995	A	G	8327.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr20	20033423	rs6046572	G	A	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	20037222	rs1509573	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	20050397	rs200183	G	A	8042.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr20	20056038	rs11482118	T	TA	905.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	20071332	.	CAAAAAA	C	1163.73	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.84;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:8,31:0.79:39
chr20	20071362	rs57605712	A	T	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-0.486;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:42,48:0.53:90
chr20	20071634	rs6046614	T	C	9455.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr20	20079360	rs6075614	A	G	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:102,113:0.53:215
chr20	20123624	rs7265615	G	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr20	20139951	rs11475376	GC	G	5264.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	20140196	rs2179823	T	C	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	20144772	rs6081901	G	A	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:71,112:0.61:183
chr20	20146875	rs6046679	C	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	20150027	rs6075630	C	T	7761.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:233,386:0.62:619
chr20	20150182	rs6112802	A	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	20152462	rs996197	A	C	10404.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr20	20152581	rs2328500	G	A	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	20168497	rs2179825	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	20180288	rs11474984	AT	A	547.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr20	20243527	rs144717739	C	CT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.946;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr20	20243562	rs41279010	A	G	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=-1.935;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:55,54:0.50:109
chr20	20269631	rs1410263	C	G	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	20350516	rs6137007	T	G	5164.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr20	20377421	rs11426947	A	AC	18760.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=645;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.106;QD=31.48;ReadPosRankSum=1.227;SOR=0.410;set=HC	GT:AD:AF:DP	1/1:3,593:0.99:596
chr20	20445793	rs74180992	T	TCACA,TCACACACACA	1967.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=40.99;ReadPosRankSum=-1.105;SOR=0.739;set=HC	GT:AD:AF:DP	1/2:1,32,15:0.67,0.31:48
chr20	20609964	rs11467035	AACACACACAC	A	1124.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:80,41:0.34:121
chr20	21106714	rs5840900	C	CG	4612.73	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:388,177:0.31:565
chr20	21126194	rs6047271	C	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr20	21142454	rs11482592	A	AC	726.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.910;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:108,53:0.33:161
chr20	21142523	rs4815025	C	G	3471.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:369,197:0.35:566
chr20	21142813	rs2236178	T	C	5215.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:493,293:0.37:786
chr20	21186161	rs11087346	A	AG	11292.73	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr20	21186296	rs11321878	TA	T	743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-1.797;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,73:0.74:99
chr20	21196121	.	C	CA	99.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=-0.758;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr20	21227314	rs6047326	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	21307107	rs2296728	A	G	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=0.316;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:104,65:0.38:169
chr20	21312288	rs202837	A	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,48:0.56:85
chr20	21313109	rs11481754	T	TA	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr20	21314079	rs202840	T	C	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=-2.459;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr20	21319828	rs202844	A	G	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	21321294	rs202845	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	21328715	rs11087351	GT	G	823.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=21.12;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	21336825	rs3787500	G	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:99,77:0.44:176
chr20	21362703	rs11476840	TA	T	2464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.316;QD=7.14;ReadPosRankSum=-0.297;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:218,127:0.37:345
chr20	21362758	rs6047417	T	G	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:104,52:0.33:156
chr20	22562674	rs1212275	T	C	20083.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=860;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.62;ReadPosRankSum=-0.078;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:8,776:0.99:784
chr20	22562850	.	A	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=4.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.96;ReadPosRankSum=-0.007;SOR=1.639;set=HC	GT:AD:AF:DP	0/1:78,13:0.14:91
chr20	23016970	rs3746726	T	G	8084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0.000;DB;DP=1287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=0.467;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:807,475:0.37:1282
chr20	23017017	rs2567609	T	C	8151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;ClippingRankSum=0.000;DB;DP=1304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-0.594;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:843,453:0.35:1296
chr20	23017044	rs3746728	C	T	7344.77	.	AC=1;AF=0.500;AN=2;DB;DP=1379;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:935,436:0.32:1371
chr20	23017082	rs2567608	T	C	7961.77	.	AC=1;AF=0.500;AN=2;DB;DP=1444;set=Intersection	GT:AD:AF:DP	0/1:968,468:0.33:1436
chr20	23064810	rs11087413	C	T	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:296,172:0.37:468
chr20	23065209	rs3746731	G	A	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:276,151:0.35:427
chr20	23065342	rs3746732	A	G	3320.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:413,204:0.33:617
chr20	23065879	rs34170527	G	A	8332.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:302,402:0.57:704
chr20	23345844	rs6048760	A	C	3818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=0.832;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:128,188:0.59:316
chr20	23346515	rs6137910	C	G	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr20	23347553	rs999072	C	T	40.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.17;ReadPosRankSum=-0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr20	23350525	rs17830281	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr20	23360369	rs6137917	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr20	23370925	rs11696147	A	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=0.928;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:48,37:0.44:85
chr20	23375830	rs376799465	G	A	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:158,208:0.57:366
chr20	23377642	rs3736755	C	T	2351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-1.186;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:68,111:0.62:179
chr20	23401904	.	ACC	A,AC	18598.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DP=835;ExcessHet=3.0103;FS=1.096;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.03;MQRankSum=0.389;QD=24.50;ReadPosRankSum=0.704;SOR=0.766;set=HC	GT:AD:AF:DP	1/2:50,403,306:0.53,0.40:759
chr20	23421101	rs17757442	G	A	10032.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:322,476:0.60:798
chr20	23424613	rs3746736	T	C	3272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=0.949;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:159,172:0.52:331
chr20	23424638	rs3746737	C	T	3818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.289;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:177,197:0.53:374
chr20	23432528	rs2236021	A	G	4158.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:151,200:0.57:351
chr20	23472391	rs2983288	A	G	8044.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr20	23528536	rs6076084	T	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:114,95:0.45:209
chr20	23528662	rs6083145	G	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr20	23529377	rs3004129	G	A	6314.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr20	23529388	rs2983611	C	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:121,77:0.39:198
chr20	23529418	rs6083147	G	C	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:93,104:0.53:197
chr20	23530941	rs1028560	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr20	23531276	rs1028561	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:97,61:0.39:158
chr20	23546639	rs2295564	T	G	2826.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:216,149:0.41:365
chr20	23546871	rs2208284	T	C	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr20	23548774	rs2983617	T	C	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	23549166	rs6083172	C	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr20	23584116	rs726217	G	A	7488.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr20	23586184	rs2983639	T	C	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	23586360	rs2983640	G	A	8661.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr20	23615819	.	TCA	T	1011.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DP=337;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.169;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:233,67:0.22:300
chr20	23618395	rs6138024	T	C	5701.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr20	23729722	rs3188314	G	T	37327.77	.	AC=2;AF=1.00;AN=2;DB;DP=1415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.51;QD=26.40;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,1414:1.00:1414
chr20	23731494	rs6076122	A	G	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:197,134:0.40:331
chr20	23731560	rs6076123	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,32:0.35:91
chr20	23731589	rs113896553	G	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr20	23805832	rs6036548	G	A	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.104;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.513;QD=5.50;ReadPosRankSum=1.225;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:111,53:0.32:164
chr20	23807028	rs4407312	A	C	5623.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:452,305:0.40:757
chr20	23857982	rs2071445	A	G	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr20	23858334	rs2071444	G	A	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr20	23860178	rs1799841	A	G	7286.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:303,363:0.55:666
chr20	24524218	rs4815274	C	G	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr20	24524245	rs4813519	A	G	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	24645939	rs2892217	G	A	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:354,178:0.33:532
chr20	24930221	rs45469992	G	A	4048.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:370,233:0.39:603
chr20	24937822	rs6050205	C	T	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,36:0.51:71
chr20	24938121	rs6050206	A	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr20	24938159	rs6036997	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr20	24944447	rs1045772	G	A	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:128,156:0.55:284
chr20	24944933	rs761368	T	C	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,69:0.64:107
chr20	24950373	rs2064404	A	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr20	24950781	rs6050218	A	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr20	24952037	rs6050225	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr20	24964722	rs727964	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.97;ReadPosRankSum=-1.718;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr20	24973247	rs11550623	C	A	6800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-1.236;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:212,355:0.63:567
chr20	24973363	rs11087492	A	G	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:32,82:0.72:114
chr20	24987438	rs6083718	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,65:0.61:106
chr20	24989797	rs57913893	G	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr20	24993053	rs45501494	G	A	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr20	24993220	rs56222810	A	G	6140.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:200,302:0.60:502
chr20	24993414	rs6132785	T	C	4364.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:125,201:0.62:326
chr20	24994003	rs6115000	G	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr20	24994275	rs6115001	G	A	3854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-0.299;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:149,199:0.57:348
chr20	25000734	rs6115003	G	A	6074.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:199,295:0.60:494
chr20	25004071	rs4813543	G	T	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.95;SOR=1.734;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	25011423	rs6050259	T	C	11934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=1046;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=0.117;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:455,581:0.56:1036
chr20	25027331	rs6132792	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	25038372	rs62217194	G	A	12469.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=-0.983;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:2,489:1.00:491
chr20	25038798	rs7265950	C	T	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.05;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	25053105	rs743018	G	A	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr20	25057191	rs11427085	T	TA	1099.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:5,56:0.92:61
chr20	25059381	rs56157240	A	T	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr20	25059546	rs12480307	T	C	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	25061865	rs145972043	AATC	A	1832.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	25061875	rs61304082	T	C	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	25062001	rs7344824	T	A	7874.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.160;QD=24.23;ReadPosRankSum=-1.348;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:2,323:0.99:325
chr20	25062145	rs6050306	C	T	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr20	25176296	rs6083773	A	C	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	25188117	rs118028386	G	A	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:22,75:0.77:97
chr20	25195509	rs6050446	A	G	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	25197982	rs4815394	T	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr20	25199109	rs1980497	G	T	5673.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:167,276:0.62:443
chr20	25258044	rs57671803	A	C	4162.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:94,201:0.68:295
chr20	25268883	rs145579534	G	C	3604.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:131,176:0.57:307
chr20	25274951	rs13042337	G	A	4588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=0.761;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:312,135:0.30:447
chr20	25274951	.	GGT	AGG	1937	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=18;MQ=60.0;NF=30;NR=39;PP=1937;QD=28.8473605052;SC=TCCCTGGTTGGGTGGCTGGGA;SbPval=0.49;Source=Platypus;TC=233;TCF=98;TCR=135;TR=69;WE=25274968;WS=25274941;set=Platypus	GT:AD:AF:DP	1/0:164,69:0.30:233
chr20	25274953	rs13043183	T	G	4589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=1.077;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:310,132:0.30:442
chr20	25282967	rs746748	C	T	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr20	25288632	rs6107027	G	A	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	25295787	rs2297496	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	25297640	rs41297630	A	G	3676.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:94,170:0.64:264
chr20	25320228	rs6050544	T	A	13981.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,546:1.00:546
chr20	25371112	rs139848340	GGCCCCC	G	5467.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=43.74;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	25371125	rs77202707	C	G	3420.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;MQRankSum=0.302;QD=24.61;ReadPosRankSum=-0.982;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:2,137:0.99:139
chr20	25371378	rs145380090	G	GGCCTCCGCC	1958.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=43.53;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	25398790	rs6076347	G	A	9259.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr20	25398876	rs4815425	G	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	25442388	rs62211493	T	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr20	25448256	rs77136063	G	A	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr20	25462464	rs76753687	A	G	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:73,115:0.61:188
chr20	25520827	rs11472175	A	AAC	5473.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr20	25755988	.	AAG	A	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-1.549;QD=0.87;ReadPosRankSum=-2.284;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:114,16:0.12:130
chr20	25829184	rs74788234	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr20	25829290	rs75735480	G	T	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=865;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-26.337;QD=2.02;ReadPosRankSum=7.168;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:723,115:0.14:838
chr20	25829292	rs76588078	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=883;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-18.195;QD=0.31;ReadPosRankSum=5.332;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:814,66:0.07:880
chr20	25829319	rs76467023	A	G	4375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.320;ClippingRankSum=0.000;DB;DP=1075;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-31.503;QD=4.09;ReadPosRankSum=1.696;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:899,170:0.16:1069
chr20	25829342	rs75063166	T	C	4733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.759;ClippingRankSum=0.000;DB;DP=1063;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-29.277;QD=4.47;ReadPosRankSum=-8.178;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:881,178:0.17:1059
chr20	25829352	rs74961672	T	C	4097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.756;ClippingRankSum=0.000;DB;DP=1016;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-27.287;QD=4.07;ReadPosRankSum=-7.490;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:852,155:0.15:1007
chr20	25829384	rs75757905	T	C	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.398;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=57.09;MQRankSum=-21.040;QD=1.41;ReadPosRankSum=2.010;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:626,87:0.12:713
chr20	25829386	rs74835374	A	G	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.769;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-20.358;QD=1.49;ReadPosRankSum=2.788;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:601,82:0.12:683
chr20	25900042	rs11699407	A	C	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr20	25900078	rs78346173	A	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:105,28:0.21:133
chr20	25900128	rs79754881	A	T	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=0.051;QD=5.40;ReadPosRankSum=0.056;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:206,63:0.23:269
chr20	25900135	rs11699441	C	A	2709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-0.323;QD=10.30;ReadPosRankSum=-1.718;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:173,90:0.34:263
chr20	25900162	rs6037279	C	A	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:183,105:0.36:288
chr20	25900164	rs138554349	CCAA	C	1153.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:245,46:0.16:291
chr20	25900190	rs199687742	AAATT	A	1239.73	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:212,46:0.18:258
chr20	25900215	rs189420178	T	C	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.93;MQRankSum=1.034;QD=1.44;ReadPosRankSum=-0.474;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:172,40:0.19:212
chr20	25900286	rs76626696	G	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.179;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=14.197;MLEAC=1;MLEAF=0.500;MQ=52.81;MQRankSum=-4.403;QD=0.39;ReadPosRankSum=-0.552;SOR=3.781;set=HC	GT:AD:AF:DP	0/1:78,7:0.08:85
chr20	25900330	.	AAC	A	162	.	AC=1;AF=0.500;AN=2;BRF=0.55;FR=0.5000;HP=8;HapScore=1;MGOF=12;MMLQ=26;MQ=53.81;NF=2;NR=4;PP=162;QD=28.6666666667;SC=GTTAAAAAAAAACACACACAC;SbPval=0.07;Source=Platypus;TC=27;TCF=2;TCR=25;TR=6;WE=25900339;WS=25900320;set=Platypus	GT:AD:AF:DP	0/1:21,6:0.22:27
chr20	26061746	rs369643668	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-8.041;QD=0.69;ReadPosRankSum=-1.398;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr20	26063560	rs5742261	G	A	4946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-1.376;QD=12.59;ReadPosRankSum=-0.532;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:152,241:0.61:393
chr20	26063684	rs78016604	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=5.487;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-10.978;QD=0.45;ReadPosRankSum=1.168;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:112,10:0.08:122
chr20	26063696	rs374797956	A	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=8.680;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-9.561;QD=1.36;ReadPosRankSum=-0.486;SOR=0.115;set=HC	GT:AD:AF:DP	0/1:83,10:0.11:93
chr20	26063712	rs113808324	A	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-7.378;QD=3.34;ReadPosRankSum=-2.583;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:50,6:0.11:56
chr20	26094406	.	A	AC	1004	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=3;HapScore=2;MGOF=11;MMLQ=26;MQ=56.37;NF=13;NR=0;PP=1004;QD=82.1419815747;SC=AGCTCTTGCCATTTAAAAAAA;SbPval=1.0;Source=Platypus;TC=43;TCF=32;TCR=11;TR=13;WE=26094428;WS=26094396;set=Platypus	GT:AD:AF:DP	1/0:30,13:0.30:43
chr20	26094420	.	T	C	212.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:71,25:0.26:96
chr20	26094475	rs374094583	AC	A	4596.73	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:355,136:0.28:491
chr20	26094483	rs146324498	CAT	C	4623.73	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:389,141:0.27:530
chr20	26094501	rs76641988	T	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-1.153;QD=1.25;ReadPosRankSum=-1.538;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:515,106:0.17:621
chr20	26094564	rs79802274	T	G	3909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378;ClippingRankSum=0.000;DB;DP=801;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-3.041;QD=4.92;ReadPosRankSum=0.494;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:540,255:0.32:795
chr20	26094567	rs62211581	T	C	9702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=786;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-8.741;QD=12.41;ReadPosRankSum=3.107;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:496,286:0.37:782
chr20	26094605	rs150462295	G	A	4131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.693;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=3.662;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-1.423;QD=9.68;ReadPosRankSum=0.045;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:303,124:0.29:427
chr20	26094609	rs80248029	C	A	4114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=4.271;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-1.227;QD=10.31;ReadPosRankSum=-0.642;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:281,118:0.30:399
chr20	26094638	rs76011113	C	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:173,63:0.27:236
chr20	26094648	rs138948176	CTG	C	335.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.65;MQRankSum=-5.030;QD=1.81;ReadPosRankSum=-3.129;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:162,23:0.12:185
chr20	26094651	rs77014314	T	C	1618.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=6.518;MLEAC=1;MLEAF=0.500;MQ=53.65;MQRankSum=-3.958;QD=8.70;ReadPosRankSum=-0.770;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:133,53:0.28:186
chr20	26094660	rs75350116	T	C	2314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.282;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=15.900;MLEAC=1;MLEAF=0.500;MQ=53.01;MQRankSum=-6.991;QD=15.33;ReadPosRankSum=-2.356;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:92,59:0.39:151
chr20	26094689	rs79312112	A	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.594;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-5.388;QD=1.46;ReadPosRankSum=-0.456;SOR=1.450;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr20	29625745	rs73621455	A	T	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.504;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=46.57;MQRankSum=-0.824;QD=14.82;ReadPosRankSum=-0.433;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr20	29625788	rs4635596	C	T	3598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=55.20;MQRankSum=-3.559;QD=13.63;ReadPosRankSum=0.152;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:136,128:0.48:264
chr20	29625818	rs149947792	C	T	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=-4.995;QD=0.84;ReadPosRankSum=-0.895;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:410,77:0.16:487
chr20	29625838	rs62198353	C	A	9195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-16.286;QD=14.78;ReadPosRankSum=6.887;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:298,324:0.52:622
chr20	29625854	.	C	G	2749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DP=815;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.87;MQRankSum=-8.257;QD=3.37;ReadPosRankSum=2.122;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:701,114:0.14:815
chr20	29625856	.	A	G	2767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DP=834;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=55.84;MQRankSum=-8.549;QD=3.32;ReadPosRankSum=1.842;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:716,118:0.14:834
chr20	29625867	rs148671283	G	A	2677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.652;ClippingRankSum=0.000;DB;DP=906;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-9.262;QD=2.96;ReadPosRankSum=1.410;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:782,124:0.14:906
chr20	29625876	rs73611718	C	T	4026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=959;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-8.354;QD=4.21;ReadPosRankSum=3.690;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:740,216:0.23:956
chr20	29625985	rs79368216	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.098;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=4.126;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-7.153;QD=0.34;ReadPosRankSum=-0.072;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:173,13:0.07:186
chr20	29625997	rs62198355	A	T	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.076;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=55.13;MQRankSum=-8.541;QD=3.76;ReadPosRankSum=1.805;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:132,41:0.24:173
chr20	29626027	rs2137756	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr20	29628164	rs62199575	G	A	11476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.20;MQRankSum=-18.424;QD=19.99;ReadPosRankSum=-4.542;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:176,398:0.69:574
chr20	29628167	rs181840913	C	T	2832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=2.427;MLEAC=1;MLEAF=0.500;MQ=55.27;MQRankSum=-7.954;QD=4.40;ReadPosRankSum=0.931;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:531,113:0.18:644
chr20	29628181	rs371105330	C	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=1002;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-9.778;QD=0.68;ReadPosRankSum=-1.261;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:867,73:0.08:940
chr20	29628226	rs78710112	G	A	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742;ClippingRankSum=0.000;DB;DP=1995;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.08;MQRankSum=-4.246;QD=0.51;ReadPosRankSum=3.704;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:1793,197:0.10:1990
chr20	29628237	rs142752776	C	A	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683;ClippingRankSum=0.000;DB;DP=2023;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=54.19;MQRankSum=-8.968;QD=0.32;ReadPosRankSum=-1.871;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:1734,210:0.11:1944
chr20	29628271	rs62199576	C	T	22359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596;ClippingRankSum=0.000;DB;DP=1819;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.49;MQRankSum=-8.194;QD=12.63;ReadPosRankSum=-1.243;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:804,966:0.55:1770
chr20	29628335	rs11152455	A	T	4049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.036;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.500;MQ=54.03;MQRankSum=-18.193;QD=5.13;ReadPosRankSum=-4.582;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:599,191:0.24:790
chr20	29628341	rs11152456	C	A	6397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.638;ClippingRankSum=0.000;DB;DP=722;ExcessHet=3.0103;FS=9.416;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-23.013;QD=9.11;ReadPosRankSum=-4.689;SOR=1.333;set=HC	GT:AD:AF:DP	0/1:502,200:0.28:702
chr20	29628361	rs11152457	A	C	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:438,111:0.20:549
chr20	29628431	rs11152458	C	T	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:143,99:0.41:242
chr20	29628477	rs62199577	T	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:70,34:0.33:104
chr20	29628488	rs11152459	C	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.259;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=54.60;MQRankSum=-1.925;QD=3.10;ReadPosRankSum=-1.050;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:68,17:0.20:85
chr20	29628498	rs62199578	A	C	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=5.869;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=-1.416;QD=3.43;ReadPosRankSum=-1.429;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr20	29628519	rs76426821	G	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.637;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-2.575;QD=1.34;ReadPosRankSum=-0.275;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:32,6:0.16:38
chr20	29630582	rs113392373	A	G	2853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.617;QD=11.74;ReadPosRankSum=-3.837;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:113,130:0.53:243
chr20	29630758	rs10084539	C	G	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467;ClippingRankSum=0.000;DB;DP=1405;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-34.463;QD=1.16;ReadPosRankSum=9.253;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:1248,137:0.10:1385
chr20	29630760	rs137900323	T	C	1608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=1385;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-34.430;QD=1.18;ReadPosRankSum=9.482;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:1229,137:0.10:1366
chr20	29632519	.	GA	G	280	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=6;HapScore=2;MGOF=16;MMLQ=26;MQ=44.71;NF=12;NR=0;PP=280;QD=25.4166666667;SC=TTTAATAAGTGAAAAAAGAAA;SbPval=1.0;Source=Platypus;TC=31;TCF=20;TCR=11;TR=12;WE=29632527;WS=29632509;set=Platypus	GT:AD:AF:DP	0/1:19,12:0.39:31
chr20	29632564	rs2379677	G	A	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.90;QD=33.74;SOR=1.431;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	29632569	.	CAG	C	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=3.363;MLEAC=1;MLEAF=0.500;MQ=53.25;MQRankSum=-0.403;QD=3.82;ReadPosRankSum=0.543;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:105,21:0.17:126
chr20	29632593	rs112146379	A	G	1671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=2.971;MLEAC=1;MLEAF=0.500;MQ=54.50;MQRankSum=2.383;QD=6.17;ReadPosRankSum=-1.614;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:190,81:0.30:271
chr20	29632605	.	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-8.988;QD=0.48;ReadPosRankSum=-1.907;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:349,30:0.08:379
chr20	29632638	rs9647043	C	A	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=7.346;QD=0.59;ReadPosRankSum=-0.606;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:631,106:0.14:737
chr20	29632662	rs1803594	G	C	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;ClippingRankSum=0.000;DB;DP=840;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-16.367;QD=1.35;ReadPosRankSum=7.631;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:683,107:0.14:790
chr20	29632674	rs138867112	T	TA	766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=830;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=7.914;QD=0.94;ReadPosRankSum=6.419;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:694,123:0.15:817
chr20	29632709	rs78816635	C	T	4535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=725;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-3.395;QD=6.37;ReadPosRankSum=-0.748;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:533,179:0.25:712
chr20	29632714	rs76788819	C	A	5022.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.944;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=2.094;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=-5.860;QD=7.74;ReadPosRankSum=1.608;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:492,157:0.24:649
chr20	29632715	rs74765991	T	G	5034.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=2.084;MLEAC=1;MLEAF=0.500;MQ=54.32;MQRankSum=-6.416;QD=7.84;ReadPosRankSum=2.104;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:490,152:0.24:642
chr20	29632726	rs138922778	CTATT	C	3679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=2.872;MLEAC=1;MLEAF=0.500;MQ=54.14;MQRankSum=-10.242;QD=8.29;ReadPosRankSum=0.293;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:326,118:0.27:444
chr20	29632761	rs6057390	T	C	4574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.635;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-10.060;QD=16.28;ReadPosRankSum=0.061;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:81,200:0.71:281
chr20	29633770	.	T	TAA	90	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=25;MQ=49.52;NF=3;NR=0;PP=90;QD=41.0;SC=TATTTTAATATGTGTTGTGGT;SbPval=1.0;Source=Platypus;TC=10;TCF=10;TCR=0;TR=3;WE=29633778;WS=29633760;set=Platypus	GT:AD:AF:DP	1/0:7,3:0.30:10
chr20	29633787	rs76004887	A	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.192;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.70;MQRankSum=-2.514;QD=3.87;ReadPosRankSum=-2.924;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr20	29633794	rs10084493	C	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr20	29633887	rs2313264	G	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=4.907;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=-6.267;QD=0.44;ReadPosRankSum=-5.463;SOR=1.235;set=HC	GT:AD:AF:DP	0/1:198,30:0.13:228
chr20	29633916	rs2554494	G	T	2871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-5.372;QD=9.03;ReadPosRankSum=1.350;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:228,90:0.28:318
chr20	29633927	rs62196372	C	A	2617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-3.759;QD=7.77;ReadPosRankSum=2.329;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:257,80:0.24:337
chr20	29633929	rs7509092	A	G	2520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=55.36;MQRankSum=-3.892;QD=7.37;ReadPosRankSum=2.022;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:262,80:0.23:342
chr20	29633952	rs62196374	C	T	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=3.058;MLEAC=1;MLEAF=0.500;MQ=55.21;MQRankSum=-5.111;QD=5.66;ReadPosRankSum=-1.605;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:270,66:0.20:336
chr20	29633966	rs201513813	GTTT	GT,G	3944.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=340;set=Intersection	GT:AF:DP	0/1:0.53:283
chr20	29633986	rs2379676	A	C	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.636;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-7.167;QD=3.02;ReadPosRankSum=-2.260;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:247,39:0.14:286
chr20	29634037	rs4006816	G	A	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:95,55:0.37:150
chr20	29634049	rs2379675	G	C	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr20	29634102	.	T	TTTTAG	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-3.466;QD=3.98;ReadPosRankSum=-1.585;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr20	29652000	rs62206780	T	C	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.858;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.110;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=0.168;QD=3.75;ReadPosRankSum=0.089;SOR=0.220;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr20	29652005	.	A	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.035;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-0.728;QD=3.97;ReadPosRankSum=1.888;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr20	29652010	rs78663325	C	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-0.217;QD=3.48;ReadPosRankSum=1.610;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr20	29652036	rs62206781	C	T	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:132,79:0.37:211
chr20	29652065	rs73611950	A	G	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.167;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.367;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:236,39:0.14:275
chr20	29652083	rs66615221	C	T	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=2.09;ReadPosRankSum=1.335;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:329,44:0.12:373
chr20	29652099	rs74613177	G	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.531;QD=0.66;ReadPosRankSum=3.099;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:467,43:0.08:510
chr20	29652102	.	C	CT	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DP=538;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.523;QD=0.45;ReadPosRankSum=2.877;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:481,43:0.08:524
chr20	29652105	rs76299428	T	C	1971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=3.620;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-0.496;QD=3.48;ReadPosRankSum=4.164;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:477,90:0.16:567
chr20	29652107	rs62206782	T	G	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=3.792;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-0.531;QD=3.25;ReadPosRankSum=4.399;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:496,90:0.15:586
chr20	29652172	rs78862124	T	C	24448.77	.	AC=1;AF=0.500;AN=2;DB;DP=1008;set=Intersection	GT:AD:AF:DP	0/1:339,652:0.66:991
chr20	29652173	rs79057885	G	A	2644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=1011;ExcessHet=3.0103;FS=2.843;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=1.962;QD=2.68;ReadPosRankSum=5.065;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:861,125:0.13:986
chr20	29652182	rs36076351	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=997;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=0.906;QD=0.28;ReadPosRankSum=2.369;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:904,77:0.08:981
chr20	29652183	rs71276709	G	A	2813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=989;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=2.093;QD=2.92;ReadPosRankSum=5.448;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:831,133:0.14:964
chr20	29652190	rs76344754	T	G	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=0.915;QD=0.39;ReadPosRankSum=2.580;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:845,72:0.08:917
chr20	29652191	rs62206784	C	T	20084.77	.	AC=1;AF=0.500;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	0/1:389,511:0.57:900
chr20	29652196	rs62206785	T	C	2141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=888;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-9.827;QD=2.45;ReadPosRankSum=-2.380;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:693,180:0.21:873
chr20	29652236	rs62206786	G	C	16274.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:185,394:0.68:579
chr20	29652254	rs77357187	G	A	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=2.241;QD=2.57;ReadPosRankSum=-3.429;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:309,84:0.21:393
chr20	29652303	rs62206787	T	C	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:27,74:0.73:101
chr20	29965014	rs709045	T	C	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.62;ReadPosRankSum=-0.848;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:10,25:0.71:35
chr20	29966275	rs2223527	G	A	10195.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr20	29966362	rs2206383	A	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	29977156	rs2295500	G	A	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:32,60:0.65:92
chr20	29978212	rs73108009	G	C	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-0.229;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:152,96:0.39:248
chr20	29978216	rs2206381	T	C	8203.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr20	30000625	.	G	A	959.77	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr20	30037783	rs2273468	C	T	4601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.202;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:135,223:0.62:358
chr20	30038038	rs45520534	T	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.15;ReadPosRankSum=-1.231;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr20	30053255	rs6059440	G	A	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:90,72:0.44:162
chr20	30060720	rs111402081	G	GCA	2552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=0.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=1.611;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:457,124:0.21:581
chr20	30064331	rs1006459	A	G	10851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=1714;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-2.931;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:1057,625:0.37:1682
chr20	30142484	.	C	CA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.228;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chr20	30156903	rs11376444	G	GT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=2.708;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:74,22:0.23:96
chr20	30193954	rs8116155	G	C	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:106,181:0.63:287
chr20	30347798	rs11698833	C	T	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:101,150:0.60:251
chr20	30347832	rs6060930	A	G	4166.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:156,213:0.58:369
chr20	30381660	rs61754553	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:121,68:0.36:189
chr20	30449181	rs12569	G	A	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:142,83:0.37:225
chr20	30449325	rs947310	C	G	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,63:0.46:138
chr20	30449516	rs11417441	G	GC	1432.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.74;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	30452782	rs4911536	C	T	8850.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:287,413:0.59:700
chr20	30458169	.	C	G	1000.77	.	AC=1;AF=0.500;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	0/1:104,60:0.37:164
chr20	30513735	rs4911195	C	T	18382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342;ClippingRankSum=0.000;DB;DP=1482;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=2.666;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:581,888:0.60:1469
chr20	30522545	rs148917180	C	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:67,45:0.40:112
chr20	30584710	rs61750849	C	T	7730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DB;DP=1182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.539;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:740,432:0.37:1172
chr20	30606000	.	GGGGGCGGGGGCGGGGGA	G	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.94;MQRankSum=4.195;QD=13.67;ReadPosRankSum=0.463;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr20	30661297	rs2297304	G	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:56,71:0.56:127
chr20	30671875	rs242607	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:131,83:0.39:214
chr20	30681999	rs6121337	T	C	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr20	30689092	rs76379542	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:76,44:0.37:120
chr20	30729488	rs6089193	T	C	11649.77	.	AC=1;AF=0.500;AN=2;DB;DP=963;set=Intersection	GT:AD:AF:DP	0/1:386,560:0.59:946
chr20	30742996	rs1205843	G	T	3522.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:336,197:0.37:533
chr20	30746248	rs6061195	T	C	3590.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:112,173:0.61:285
chr20	30747679	rs4911553	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr20	30753270	rs14316	T	C	4502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=3.233;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:137,211:0.61:348
chr20	30777800	rs11907716	T	C	7718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.484;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-3.646;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:252,375:0.60:627
chr20	30777860	rs11907235	A	G	2762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=0.569;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:165,148:0.47:313
chr20	30795819	rs1923095	T	C	12983.77	.	AC=1;AF=0.500;AN=2;DB;DP=1101;set=Intersection	GT:AD:AF:DP	0/1:451,638:0.59:1089
chr20	30914706	rs3746606	C	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr20	30954295	rs2295454	A	G	4781.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:167,232:0.58:399
chr20	30959704	rs2424879	A	G	2309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=-0.669;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:146,125:0.46:271
chr20	31016314	rs3818190	A	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr20	31019024	rs2295765	C	T	11820.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr20	31022959	rs6058694	T	C	7441.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr20	31024274	rs4911231	T	C	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:121,162:0.57:283
chr20	31025163	rs2295764	A	G	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:70,117:0.63:187
chr20	31025231	rs2295763	T	C	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr20	31040199	rs376348600	G	A	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:88,159:0.64:247
chr20	31074372	rs6141734	G	A	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:41,115:0.74:156
chr20	31097877	rs293566	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr20	31099311	rs159428	T	C	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:51,99:0.66:150
chr20	31108805	rs6141745	T	A	2252.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:77,109:0.59:186
chr20	31189411	rs2029086	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr20	31238139	rs35103329	G	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr20	31238627	rs7272020	C	T	3956.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:335,214:0.39:549
chr20	31291161	rs9421	C	T	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	31292298	rs59379723	CA	C	1070.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.509;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:30,101:0.77:131
chr20	31294655	rs28548540	A	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	31315862	rs2064936	G	A	6441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.42;ReadPosRankSum=-1.092;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:109,166:0.60:275
chr20	31315867	rs2064937	C	T	6351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.01;ReadPosRankSum=0.423;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:115,161:0.58:276
chr20	31390138	rs17368519	A	G	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:103,166:0.62:269
chr20	31466347	rs13037174	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.74;QD=43.51;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	31466364	rs13037187	C	T	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	31466387	rs13037762	A	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	31466534	rs13037496	C	T	11111.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,440:1.00:440
chr20	31473483	rs6119300	G	C	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	31480938	rs2377733	C	T	10981.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr20	31480961	rs2377734	C	T	13747.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr20	31484270	.	C	T	1830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=2.000;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:170,102:0.38:272
chr20	31484417	rs11167186	T	A	12228.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr20	31486206	rs6058948	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	31494382	rs6120033	G	A	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr20	31494915	rs57106662	G	C	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:89,102:0.53:191
chr20	31495977	rs17370942	C	T	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:102,84:0.45:186
chr20	31505292	rs13037781	C	T	17461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=1509;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=2.568;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:634,863:0.58:1497
chr20	31518229	rs117765537	G	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:96,54:0.36:150
chr20	31531544	rs13045180	C	T	5372.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:185,260:0.58:445
chr20	31549424	rs11167189	G	A	3448.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:154,168:0.52:322
chr20	31571485	rs6087436	C	T	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr20	31573528	rs2274343	A	C	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:93,146:0.61:239
chr20	31573769	rs13040459	T	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr20	31577394	rs6058991	G	A	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:120,72:0.38:192
chr20	31577572	rs6088057	C	T	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:105,59:0.36:164
chr20	31577582	rs141745544	CAG	C	1687.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:84,48:0.36:132
chr20	31583384	rs2070310	A	G	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:157,117:0.43:274
chr20	31583966	rs2070311	T	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr20	31584178	rs6141862	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:125,79:0.39:204
chr20	31585351	rs452299	C	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr20	31585415	rs190097	T	C	1817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=7.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-0.709;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:93,93:0.50:186
chr20	31585545	rs440139	C	T	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:198,106:0.35:304
chr20	31587752	rs414191	G	C	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:144,96:0.40:240
chr20	31587793	rs15850	A	G	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:244,156:0.39:400
chr20	31590686	rs1133358	C	A	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:94,113:0.55:207
chr20	31621832	.	T	G	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=0.425;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr20	31623353	.	C	T	2194.77	.	AC=1;AF=0.500;AN=2;DP=254;set=Intersection	GT:AD:AF:DP	0/1:136,105:0.44:241
chr20	31649781	rs398444	T	C	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	31651583	rs403461	A	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	31652409	rs79047848	C	T	16801.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr20	31656837	rs2424938	G	A	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	31660489	rs11700200	T	C	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr20	31661650	rs7267265	G	A	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	31671209	rs13036385	G	C	13817.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,529:1.00:529
chr20	31671599	rs4339026	A	G	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	31671663	rs2424945	T	C	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	31671693	rs3926669	C	T	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	31671766	rs1547004	G	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	31677476	rs6057722	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	31678534	rs2070326	T	C	9171.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr20	31680234	rs2070327	C	T	5768.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr20	31682778	rs2024934	C	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	31685405	rs13041016	C	T	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr20	31688241	rs11699009	T	C	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr20	31688260	rs11696307	C	T	7291.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr20	31688330	rs11696310	C	T	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	31811551	rs725914	C	T	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:60,68:0.53:128
chr20	31812923	rs3818222	G	A	2205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-1.512;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:227,129:0.36:356
chr20	31814348	rs1570033	G	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:73,86:0.54:159
chr20	31828265	rs6059187	A	G	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:60,132:0.69:192
chr20	31828336	.	A	AGATG	1062.73	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr20	31829083	rs2273529	G	A	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,37:0.55:67
chr20	31873821	rs3746393	C	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr20	31876485	rs2295576	T	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	31876681	rs1078761	A	G	15401.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:4,608:0.99:612
chr20	31877565	rs1078944	C	T	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr20	31877713	rs61739245	A	T	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.463;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:268,116:0.30:384
chr20	31886782	.	CT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=4.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.298;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:56,20:0.26:76
chr20	31892541	rs71338472	G	GC	1790.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,63:0.68:93
chr20	31894789	rs17856249	C	G	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	31897554	rs1999663	G	C	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:112,147:0.57:259
chr20	31954819	rs368904466	TA	T	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=3.143;QD=1.11;ReadPosRankSum=-0.788;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:136,51:0.27:187
chr20	32077925	rs75667555	C	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=23.52;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	32207238	.	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.733;QD=1.12;ReadPosRankSum=0.166;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr20	32211760	.	G	GA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=3.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.876;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr20	32212690	rs3803939	C	T	8199.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:1,312:1.00:313
chr20	32228088	.	C	T	792.77	.	AC=1;AF=0.500;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	0/1:75,42:0.36:117
chr20	32232296	rs45563732	C	T	19782.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,758:1.00:758
chr20	32245546	rs13037669	T	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	32245869	rs3746461	C	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	32248163	rs3746460	C	T	13406.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,507:1.00:507
chr20	32255233	rs3746459	T	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	32295541	rs910397	C	T	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr20	32298323	rs2626529	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	32328968	rs6087514	G	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	32368929	rs2889785	T	C	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	32376884	rs55886617	C	CT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=1.271;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr20	32379263	rs2626551	T	C	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr20	32399538	.	C	T	908.77	.	AC=1;AF=0.500;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	0/1:103,55:0.35:158
chr20	32664864	rs10649600	C	CCAG	8572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.766;QD=14.81;ReadPosRankSum=1.673;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:349,230:0.40:579
chr20	32664872	rs202083385	G	A	7774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-2.666;QD=12.34;ReadPosRankSum=-1.330;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:261,369:0.59:630
chr20	32880414	rs140691898	T	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.043;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr20	32891200	rs819146	G	T	9820.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr20	32996689	rs3761147	G	T	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-0.778;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:26,47:0.64:73
chr20	33033065	.	G	GTT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=11.933;MLEAC=1;MLEAF=0.500;MQ=60.64;MQRankSum=2.915;QD=1.37;ReadPosRankSum=1.299;SOR=1.277;set=HC	GT:AD:AF:DP	0/1:54,23:0.30:77
chr20	33037336	rs3736762	C	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.380;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr20	33053985	rs11480899	A	AT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.70;ReadPosRankSum=-1.812;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr20	33054050	.	T	TG	1013.73	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr20	33057954	rs6059856	G	C	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:301,167:0.36:468
chr20	33057974	rs10716089	CT	C	10736.73	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:2,314:0.99:316
chr20	33059478	rs10606931	GGTGTGTGT	G,GGTGTGTGTGT	613.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=-0.147;QD=22.73;ReadPosRankSum=-0.252;SOR=0.749;set=HC	GT:AD:AF:DP	1/2:4,12,11:0.44,0.41:27
chr20	33068563	rs6059861	A	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr20	33104592	rs2424993	G	C	11836.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr20	33147737	rs6059915	C	G	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=2.330;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:72,58:0.45:130
chr20	33148861	rs6059916	T	G	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-2.017;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:150,91:0.38:241
chr20	33150503	rs6059918	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr20	33297810	rs369052205	G	GCC	284.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr20	33297811	rs2378257	A	C	293.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr20	33326876	rs6060025	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,36:0.37:98
chr20	33334540	rs910872	T	C	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-0.670;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr20	33337605	.	G	A	4979.77	.	AC=1;AF=0.500;AN=2;DP=638;set=Intersection	GT:AD:AF:DP	0/1:363,265:0.42:628
chr20	33337751	rs3787220	T	C	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:317,234:0.42:551
chr20	33342439	rs1884432	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr20	33342477	rs6087625	G	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:66,30:0.31:96
chr20	33346556	rs11468960	ATC	A	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-0.735;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr20	33356511	rs2295353	C	T	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr20	33364584	rs6060043	C	T	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=1.318;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:123,63:0.34:186
chr20	33364655	rs6120723	C	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.304;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:72,53:0.42:125
chr20	33447162	rs60789653	G	A	2966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.937;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-1.626;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:90,135:0.60:225
chr20	33447915	rs2295094	G	A	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:74,118:0.61:192
chr20	33451148	rs11546155	G	A	17451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DB;DP=1611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.568;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:718,866:0.55:1584
chr20	33460366	rs11697978	G	C	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:87,100:0.53:187
chr20	33464710	rs2295096	A	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.212;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr20	33470694	rs4911163	C	T	9043.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr20	33496667	.	G	GA	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-1.692;QD=1.78;ReadPosRankSum=0.283;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:83,30:0.27:113
chr20	33500245	rs3787214	C	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	33500378	rs2378294	G	A	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	33503036	.	A	C	1938.77	.	AC=1;AF=0.500;AN=2;DP=353;set=Intersection	GT:AD:AF:DP	0/1:230,119:0.34:349
chr20	33507379	rs60692848	AGTGT	A	216.79	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr20	33509275	rs3818273	G	A	10267.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr20	33509523	rs2273683	C	T	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	33533736	rs734111	A	C	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	33565528	rs117616040	G	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:121,82:0.40:203
chr20	33565755	rs11906160	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:155,90:0.37:245
chr20	33572941	rs2425007	A	G	13001.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=-1.532;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:3,498:0.99:501
chr20	33574022	rs2425008	G	C	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:80,127:0.61:207
chr20	33575347	rs3053708	C	CAT	9276.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr20	33578899	rs2425009	T	C	8093.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr20	33581955	rs2425012	G	A	10485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=867;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=2.042;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:352,503:0.59:855
chr20	33583033	rs10536288	CAAA	C	277.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	33583037	rs61501849	C	G	286.80	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	33583114	rs2425014	T	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	33583331	rs2425015	A	G	16991.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:0,649:1.00:649
chr20	33584289	rs3746438	C	T	5406.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:214,269:0.56:483
chr20	33584822	rs11167250	T	TG	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	33584864	rs11167251	C	CT	1373.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	33585437	rs55734215	C	T	4613.77	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:413,258:0.38:671
chr20	33587301	rs139695218	CAG	C	3604.73	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:185,100:0.35:285
chr20	33587553	rs369393561	TCC	T	7561.73	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:33,229:0.87:262
chr20	33587596	rs80109502	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:245,57:0.19:302
chr20	33590096	rs4911167	A	G	2082.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:68,96:0.59:164
chr20	33591107	rs59909520	T	TG	3550.73	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:186,144:0.44:330
chr20	33591197	rs11481073	A	AG	14016.73	.	AC=2;AF=1.00;AN=2;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=34.10;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,411:1.00:411
chr20	33592148	rs73905041	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr20	33592474	rs752449	A	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	33593457	rs3746431	T	C	5559.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:161,263:0.62:424
chr20	33593674	rs3746430	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	33594226	rs6060151	G	T	3324.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:84,158:0.65:242
chr20	33595300	rs2273636	C	T	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr20	33604042	rs3736802	T	C	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr20	33632203	rs11483863	G	GA	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.713;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=1.499;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr20	33632552	rs368405065	A	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr20	33632600	rs3803938	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.15;ReadPosRankSum=-0.349;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr20	33637606	rs2281626	T	G	10297.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr20	33642732	rs4911462	G	T	3971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=-0.824;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:56,100:0.64:156
chr20	33642737	rs4911463	G	A	3971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=-0.010;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:56,100:0.64:156
chr20	33657126	rs1998233	G	A	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	33665831	rs78704804	A	C	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=1.596;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:128,80:0.38:208
chr20	33703134	rs17092297	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr20	33706187	rs6088722	T	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	33711624	rs6120838	T	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr20	33713963	rs2295885	T	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	33713975	rs2295886	A	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	33714187	rs2295887	G	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:44,74:0.63:118
chr20	33719400	rs56289894	G	A	2819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=-1.171;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:265,159:0.38:424
chr20	33722863	rs2295888	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr20	33762489	rs2069948	C	T	6809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=950;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.514;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:572,372:0.39:944
chr20	33763951	rs2069952	C	T	3829.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:350,216:0.38:566
chr20	33764554	rs867186	A	G	2646.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:214,150:0.41:364
chr20	33764632	rs9574	C	G	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:87,87:0.50:174
chr20	33859675	rs11696548	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr20	33862265	rs182077926	G	A	5940.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:549,324:0.37:873
chr20	33867697	rs619865	A	G	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	33868604	.	G	A	2976.77	.	AC=1;AF=0.500;AN=2;DP=397;set=Intersection	GT:AD:AF:DP	0/1:225,165:0.42:390
chr20	33971914	rs4911494	C	T	10720.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr20	33972053	rs4911496	C	T	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	33972451	rs369555246	T	TA,TAA	965.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.093;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.29;MQRankSum=0.915;QD=14.86;ReadPosRankSum=-0.016;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:12,22,31:0.34,0.48:65
chr20	33974051	rs6141549	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	33974163	rs6088812	T	A	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	33997291	rs6142378	T	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	34061918	rs35395621	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	34079200	rs224373	A	G	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr20	34099165	rs72173955	CT	C	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.609;QD=0.94;ReadPosRankSum=-0.444;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:264,90:0.25:354
chr20	34144107	rs224420	T	C	7487.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr20	34164422	rs1557202	T	C	10800.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr20	34170035	rs6060486	C	G	23767.77	.	AC=2;AF=1.00;AN=2;DB;DP=976;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,941:1.00:941
chr20	34170174	rs6119628	C	A	13997.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:1,531:1.00:532
chr20	34170316	rs6060487	C	A	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	34173046	rs1536147	C	T	35675.77	.	AC=2;AF=1.00;AN=2;DB;DP=1361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,1350:1.00:1350
chr20	34173178	rs6060488	A	G	17626.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr20	34208516	rs2425067	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	34247060	.	C	CA	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=3.275;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.282;QD=3.04;ReadPosRankSum=1.341;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:73,39:0.35:112
chr20	34280321	rs377253839	TA	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=0.812;QD=5.53;ReadPosRankSum=0.732;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr20	34294949	rs71184077	T	TA	124.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=13.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	34320202	rs11479445	TA	T	229.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.854;MLEAC=2;MLEAF=1.000;MQ=60.93;MQRankSum=0.548;QD=13.51;ReadPosRankSum=-0.309;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr20	34328274	rs1538426	G	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.157;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	34328952	.	C	CTTTTTT	914	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=25;HapScore=1;MGOF=79;MMLQ=15;MQ=49.56;NF=0;NR=1;PP=914;QD=917.0;SC=AAACATTTTTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=5;TCF=1;TCR=4;TR=1;WE=34328960;WS=34328942;set=Platypus	GT:AD:AF:DP	1/1:4,1:0.20:5
chr20	34328973	.	TGAGACGGA	T	68.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=7.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.59;ReadPosRankSum=0.253;SOR=2.807;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr20	34328982	.	G	T	77.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=7.068;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.72;ReadPosRankSum=-2.369;SOR=2.807;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr20	34435246	rs374986194	CT	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=0.495;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:137,39:0.22:176
chr20	34502107	rs17431878	G	A	3457.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:444,210:0.32:654
chr20	34535373	rs6088971	T	C	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:203,116:0.36:319
chr20	34542365	rs35448195	C	G	3969.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:416,226:0.35:642
chr20	34560526	rs11167280	G	A	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:244,146:0.37:390
chr20	34568262	rs10627329	C	CAT	192.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr20	34571846	rs6058388	T	C	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-2.264;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:43,34:0.44:77
chr20	34572834	rs6141583	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:77,49:0.39:126
chr20	34596371	rs6060750	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:115,68:0.37:183
chr20	34596510	.	G	A	284.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr20	34611450	rs11477706	GA	G	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.200;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:74,38:0.34:112
chr20	34741136	.	T	C	642.77	.	AC=1;AF=0.500;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr20	34775551	rs2247688	A	G	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:206,145:0.41:351
chr20	34776503	.	AACACACACACACACACACACACACAC	A	577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=11.160;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-0.586;QD=26.26;ReadPosRankSum=-0.195;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr20	34828609	rs709050	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr20	34832601	rs35283785	CCT	C	2374.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:110,69:0.39:179
chr20	34858360	rs2425206	T	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr20	34858434	rs11344327	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.691;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr20	35064912	rs1275393	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr20	35068018	rs1275396	A	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr20	35090820	rs1275391	C	G	5164.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:142,248:0.64:390
chr20	35127613	.	C	CT	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DP=414;ExcessHet=3.0103;FS=2.647;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.839;QD=0.96;ReadPosRankSum=2.054;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:289,68:0.19:357
chr20	35207529	rs75200387	A	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr20	35219413	.	G	T	12756.77	.	AC=1;AF=0.500;AN=2;DP=1095;set=Intersection	GT:AD:AF:DP	0/1:457,621:0.58:1078
chr20	35242796	rs113102870	G	A	5422.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:200,263:0.57:463
chr20	35288971	rs6028627	A	T	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=1.401;QD=8.04;ReadPosRankSum=2.278;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr20	35312979	rs78294453	G	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr20	35329049	.	C	G	888.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:31,40:0.56:71
chr20	35425865	rs111615165	C	A	8984.77	.	AC=1;AF=0.500;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	0/1:288,440:0.60:728
chr20	35436758	.	GA	G	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=6.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.702;SOR=1.709;set=HC	GT:AD:AF:DP	0/1:46,28:0.38:74
chr20	35437196	rs113643939	C	A	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=1.127;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:47,60:0.56:107
chr20	35445890	rs368000406	TA	T	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.699;QD=1.36;ReadPosRankSum=1.269;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:114,45:0.28:159
chr20	35457449	.	G	A	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.605;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:172,36:0.17:208
chr20	35467656	rs111283576	G	A	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:108,153:0.59:261
chr20	35491551	rs6029806	A	G	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr20	35508959	rs1291125	T	C	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:102,131:0.56:233
chr20	35661007	rs77052854	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr20	35695535	rs371434822	GA	G	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.768;QD=0.90;ReadPosRankSum=0.239;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:97,39:0.29:136
chr20	35710453	rs1892205	T	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=5.50;ReadPosRankSum=-0.593;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:61,33:0.35:94
chr20	35731181	rs117314541	G	C	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:100,120:0.55:220
chr20	35738841	rs1744759	G	C	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr20	35738892	rs112565168	T	C	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.020;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:49,50:0.51:99
chr20	35740794	rs1744760	T	C	7078.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:244,357:0.59:601
chr20	35742276	.	AATGT	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.770;QD=1.25;ReadPosRankSum=0.976;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:44,6:0.12:50
chr20	35748039	rs138010782	G	GAAAGA	3015.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=3.146;QD=16.57;ReadPosRankSum=1.255;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:105,77:0.42:182
chr20	35748894	rs1624888	C	G	9718.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr20	35749079	rs8120336	T	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr20	35749423	rs113747754	T	C	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:113,136:0.55:249
chr20	35766337	rs8115854	A	G	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:152,95:0.38:247
chr20	35769592	rs1744769	T	C	9733.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr20	35786188	rs1780687	A	C	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	35788405	rs11086937	CAA	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.315;QD=5.62;ReadPosRankSum=-0.620;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr20	35796541	rs62621241	T	C	2525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=0.076;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:245,147:0.38:392
chr20	35802571	rs112336515	C	G	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=-1.783;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:43,59:0.58:102
chr20	35807790	rs11467214	G	GCTTATAGACAGGGCCCCGCGGCCGGCACT	3975.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=66.26;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	35812526	rs16986470	C	A	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:236,130:0.36:366
chr20	35827028	rs146714866	A	ATT	635.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.90;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	35827682	rs2076398	G	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	35828696	rs6032013	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	35828757	.	ATT	A	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.275;QD=6.32;ReadPosRankSum=1.034;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:55,32:0.37:87
chr20	35835657	rs11698281	C	T	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:99,88:0.47:187
chr20	35835889	rs1079657	A	G	9080.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr20	35838372	rs2272950	T	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	35838591	rs2050091	T	C	8306.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:3,328:0.99:331
chr20	35838756	rs3817885	G	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	35852395	rs2076397	A	C	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	35852450	rs2076396	G	C	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	35858494	rs112634284	G	A	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:52,85:0.62:137
chr20	35865054	rs4608	C	T	11021.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,432:1.00:432
chr20	35869619	rs2050093	C	T	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	36030939	rs1885257	G	C	9406.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr20	36031097	rs2145792	A	G	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr20	36150591	rs34619095	A	AT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.053;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr20	36150600	rs5841264	T	TA	551.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	36375071	rs2297154	T	C	6780.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	36405667	rs6020846	A	G	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:78,46:0.37:124
chr20	36531978	rs6021782	G	T	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr20	36572310	rs11365082	AC	A	1499.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.415;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:313,105:0.25:418
chr20	36685915	rs2256288	T	C	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:155,113:0.42:268
chr20	36759521	rs2235581	C	T	6994.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:220,333:0.60:553
chr20	36759751	rs111895659	A	AC	1445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=1.206;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:32,59:0.65:91
chr20	36760995	rs45440600	G	A	5694.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:149,269:0.64:418
chr20	36761057	rs41274712	C	T	3632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=0.502;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:312,195:0.38:507
chr20	36766400	rs2281196	G	A	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,48:0.61:79
chr20	36768064	rs2072951	A	G	3545.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:86,159:0.65:245
chr20	36770374	rs2281197	C	T	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:86,110:0.56:196
chr20	36774850	rs45499198	G	A	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:33,54:0.62:87
chr20	36775024	rs2294544	G	A	10126.77	.	AC=1;AF=0.500;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	0/1:296,479:0.62:775
chr20	36793501	rs2067027	A	G	9343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=790;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=2.229;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:327,455:0.58:782
chr20	36793529	rs2076380	G	A	5067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=720;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=1.646;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:432,282:0.39:714
chr20	36841756	rs1534967	T	C	4665.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:436,259:0.37:695
chr20	36841914	rs3746471	G	A	4697.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:331,236:0.42:567
chr20	36845738	rs760998	C	T	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:284,151:0.35:435
chr20	36850940	rs41310010	G	C	7015.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:263,353:0.57:616
chr20	36850988	rs35524973	C	T	8856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=0.461;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:343,440:0.56:783
chr20	36854220	rs79697088	A	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr20	36856616	rs16987188	G	A	4540.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:182,226:0.55:408
chr20	36859497	rs12106098	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr20	36859711	rs1205418	G	A	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-2.683;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:28,53:0.65:81
chr20	36869396	rs41282822	G	A	5385.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:161,263:0.62:424
chr20	36869769	rs41282824	C	T	13005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=1146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=1.276;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:507,629:0.55:1136
chr20	36870122	rs1205435	T	A	5055.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:162,232:0.59:394
chr20	36874313	rs112586932	G	T	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:110,187:0.63:297
chr20	36919616	rs6014601	G	A	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	36919758	rs10446011	A	G	14402.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,564:1.00:564
chr20	36932551	rs1341022	G	C	9324.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr20	36932660	rs1341023	C	T	7183.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr20	36932676	rs1341024	G	C	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	36937246	rs2066252	G	A	1579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=0.173;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:35,75:0.68:110
chr20	36938878	rs5741801	T	C	3023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.625;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:393,181:0.32:574
chr20	36946848	rs4358188	G	A	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:156,129:0.45:285
chr20	36953097	rs5741806	C	T	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:173,109:0.39:282
chr20	36959318	rs5743533	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr20	36959353	rs5743534	A	G	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:157,128:0.45:285
chr20	36959566	rs2425357	A	G	6532.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr20	36959732	rs6127771	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr20	36965617	rs1131847	A	G	5779.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr20	36979133	rs2232581	T	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr20	36979265	rs2232582	T	C	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:215,100:0.32:315
chr20	36979514	rs5741815	T	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr20	36983630	rs2232589	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr20	36983670	rs2232590	C	G	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,50:0.48:104
chr20	36989302	rs1780624	C	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:99,70:0.41:169
chr20	36989381	rs2232596	G	A	2618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.456;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:238,145:0.38:383
chr20	36993206	rs2232606	A	G	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr20	36995340	rs1739639	C	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:147,93:0.39:240
chr20	36997632	rs1780627	T	C	4564.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:360,253:0.41:613
chr20	36999897	rs2232616	C	T	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:289,172:0.37:461
chr20	37001631	rs2232617	C	T	1775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.407;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.635;QD=4.61;ReadPosRankSum=1.861;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:273,112:0.29:385
chr20	37001761	rs2232618	T	C	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:241,130:0.35:371
chr20	37005536	rs745144	T	C	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:157,134:0.46:291
chr20	37055875	rs707578	T	C	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	37062583	rs788347	T	C	14737.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.81;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,571:1.00:571
chr20	37076554	rs112136513	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=3.190;QD=0.48;ReadPosRankSum=-0.044;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:63,16:0.20:79
chr20	37146131	.	C	CT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.292;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:122,30:0.20:152
chr20	37230486	rs6070740	C	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	37272589	rs419162	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr20	37274559	rs11426603	C	CA	3242.73	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:178,134:0.43:312
chr20	37274861	rs117796	A	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr20	37277153	rs220527	G	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr20	37277271	rs220526	C	T	1524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.439;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=5.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=0.600;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:179,94:0.34:273
chr20	37278612	rs220522	T	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:84,41:0.33:125
chr20	37278823	rs220521	T	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr20	37278946	rs220520	T	C	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:157,93:0.37:250
chr20	37279255	rs220519	C	T	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:80,53:0.40:133
chr20	37383482	rs35702444	T	G	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.987;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-2.112;QD=18.87;ReadPosRankSum=2.709;SOR=1.597;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chr20	37383484	rs35956429	G	A	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.968;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.935;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-2.108;QD=18.89;ReadPosRankSum=2.439;SOR=1.586;set=HC	GT:AD:AF:DP	0/1:30,28:0.48:58
chr20	37383487	.	TC	CT	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.924;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-2.104;QD=18.26;ReadPosRankSum=2.226;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:31,29:0.48:60
chr20	37536748	.	G	T	2556.77	.	AC=1;AF=0.500;AN=2;DP=406;set=Intersection	GT:AD:AF:DP	0/1:258,144:0.36:402
chr20	39609426	rs4812473	C	T	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:156,86:0.36:242
chr20	39634488	rs6016500	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr20	39728988	rs73121296	T	C	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr20	39993902	.	C	G	1725.77	.	AC=1;AF=0.500;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	0/1:50,76:0.60:126
chr20	40052372	rs34110734	TC	T	1088.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:48,46:0.49:94
chr20	40116207	rs3092194	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr20	40714524	rs722898	C	G	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:70,116:0.62:186
chr20	40714540	rs1569548	G	C	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:49,97:0.66:146
chr20	40730659	rs2425474	G	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr20	40733082	rs2076247	C	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	40743829	rs2076248	A	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:106,57:0.35:163
chr20	40757584	rs151067562	C	T	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:106,157:0.60:263
chr20	40770528	.	C	G	1850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DP=296;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=-2.593;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:187,107:0.36:294
chr20	40863182	rs6030076	C	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	40863305	rs6072666	G	A	2443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.940;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:238,143:0.38:381
chr20	40979160	rs2071854	T	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr20	40980987	rs6065464	G	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr20	41306488	rs111229158	G	GA	728.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;MQRankSum=0.579;QD=16.19;ReadPosRankSum=2.432;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:5,40:0.89:45
chr20	41306600	rs2425516	A	G	7233.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr20	41514690	.	C	CAT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.768;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr20	42089511	rs2235611	T	C	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr20	42157237	rs2071972	C	T	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:74,79:0.52:153
chr20	42159696	rs41303935	C	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr20	42163408	rs62224514	C	A	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:92,116:0.56:208
chr20	42195554	rs112275291	G	GGGAC	1569.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr20	42195863	rs4812721	G	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr20	42196089	rs2071973	T	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr20	42196550	rs2067061	T	G	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr20	42196738	rs6017119	C	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr20	42198173	rs3752560	G	A	4355.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:138,206:0.60:344
chr20	42199704	rs11467250	GGTGT	G,GGTGGGTGGGTGTGTGTGTGT	1956.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=101;set=Intersection	GT:AF:DP	0/1:0.66:50
chr20	42199925	rs3127060	G	A	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	42200936	rs72626512	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr20	42203442	rs916409	G	A	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:52,89:0.63:141
chr20	42203644	rs56150807	G	A	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:61,87:0.59:148
chr20	42205061	rs763227	G	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr20	42208522	rs2301483	T	G	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	42211728	rs72626514	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr20	42223439	.	G	A	2087.77	.	AC=1;AF=0.500;AN=2;DP=361;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:232,127:0.35:359
chr20	42225114	rs2664519	G	A	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-1.243;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:116,70:0.38:186
chr20	42242700	rs4473450	C	T	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr20	42249398	rs1555348	C	T	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr20	42249479	rs11483104	C	CT	722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.506;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:128,61:0.32:189
chr20	42264502	rs6031007	G	A	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:266,174:0.40:440
chr20	42264726	rs2273523	T	C	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr20	42265700	rs6065638	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr20	42265966	rs6031008	G	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr20	42275499	rs393115	G	T	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	42302201	rs826949	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:46,15:0.25:61
chr20	42302371	rs826950	C	T	5002.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:395,270:0.41:665
chr20	42310297	rs12625831	T	C	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:103,137:0.57:240
chr20	42310509	rs442143	T	C	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-1.500;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:59,36:0.38:95
chr20	42320881	rs2229036	C	T	3696.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:113,172:0.60:285
chr20	42328639	rs285162	T	C	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	42328749	rs285163	A	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	42331457	rs2070235	A	G	14680.77	.	AC=1;AF=0.500;AN=2;DB;DP=1198;set=Intersection	GT:AD:AF:DP	0/1:464,708:0.60:1172
chr20	42341564	rs12625913	A	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr20	42574442	rs4812769	T	C	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	42694558	rs199841880	C	CCCG	10031.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DB;DP=1050;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.431;QD=10.28;ReadPosRankSum=0.953;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:468,508:0.52:976
chr20	42745115	rs6073336	T	G	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:77,72:0.48:149
chr20	42814890	rs75804573	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:93,40:0.30:133
chr20	42814931	rs6031442	T	C	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:231,150:0.39:381
chr20	42815190	rs1883790	G	A	9120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=1198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=0.035;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:693,487:0.41:1180
chr20	42891809	rs2293	C	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:67,65:0.49:132
chr20	42892151	rs4810415	C	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr20	42907542	rs1884607	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr20	42908142	rs12479863	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:79,64:0.45:143
chr20	42939750	rs6073401	T	C	51671.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=2003;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.27;ReadPosRankSum=1.266;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:2,1965:1.00:1967
chr20	42965841	rs11699901	T	G	10056.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:265,452:0.63:717
chr20	42965863	rs3746570	C	T	5100.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:476,278:0.37:754
chr20	42966025	rs1884612	T	C	26835.77	.	AC=2;AF=1.00;AN=2;DB;DP=1059;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,1049:1.00:1049
chr20	42969798	rs3761184	A	G	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr20	42971962	rs4812825	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr20	42972275	rs4812826	G	A	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	42973908	.	G	A	2510.77	.	AC=1;AF=0.500;AN=2;DP=231;set=Intersection	GT:AD:AF:DP	0/1:104,124:0.54:228
chr20	42973935	rs11697359	T	C	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:144,172:0.54:316
chr20	42979444	rs11699154	G	A	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:78,166:0.68:244
chr20	42979553	rs11699172	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr20	43034660	rs736824	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr20	43034693	rs745975	C	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr20	43036649	rs8121034	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-1.798;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr20	43036691	rs8122476	T	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=1.940;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr20	43043051	rs3212194	C	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr20	43043095	rs3212195	G	A	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:155,115:0.43:270
chr20	43052570	rs2273618	T	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr20	43058018	rs3746574	T	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=0.085;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr20	43058096	rs3746575	C	G	2617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-2.359;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:236,144:0.38:380
chr20	43090929	rs11482024	T	TA	567.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr20	43254490	rs244074	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	43264927	rs394105	C	T	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	43343895	rs376618937	TGTGTGTGAGC	T	367.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=1.789;QD=14.71;ReadPosRankSum=1.435;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr20	43343901	rs72400085	TGA	T	30.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=-1.045;QD=1.28;ReadPosRankSum=1.535;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr20	43343905	rs1980802	C	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.20;MQRankSum=-1.327;QD=8.74;ReadPosRankSum=0.751;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr20	43343908	rs1980803	G	A	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.00;QD=45.42;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	43343930	rs1980804	T	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.24;QD=35.36;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	43356156	rs1061098	C	T	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:60,114:0.66:174
chr20	43374839	rs3834659	GC	G	2539.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:50,81:0.62:131
chr20	43378770	rs1111032	A	G	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:101,130:0.56:231
chr20	43379264	rs6073538	A	C	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:179,242:0.57:421
chr20	43379454	rs13042905	T	C	3562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.744;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:226,190:0.46:416
chr20	43438782	rs150963275	C	T	5376.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:217,262:0.55:479
chr20	43530234	rs4931	A	C	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:151,163:0.52:314
chr20	43534903	rs16989481	G	A	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr20	43534934	rs2425675	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr20	43535101	rs6876	T	C	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.080;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.742;QD=13.03;ReadPosRankSum=0.267;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:20,40:0.67:60
chr20	43535162	rs372424925	AAAAAAAG	A	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.471;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.904;QD=26.03;ReadPosRankSum=1.235;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr20	43538733	rs2072727	T	C	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr20	43547537	rs2072728	A	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:33,60:0.65:93
chr20	43547677	rs2075960	T	G	3840.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:366,221:0.38:587
chr20	43548017	rs185094152	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr20	43550045	rs2425686	A	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr20	43559043	rs3746580	G	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr20	43565622	rs3746584	G	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:191,96:0.33:287
chr20	43565804	rs6094057	G	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr20	43566787	rs11780	A	G	3967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=3.117;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:276,214:0.44:490
chr20	43567442	rs6073572	T	C	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:173,109:0.39:282
chr20	43577620	rs2234206	C	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr20	43577644	rs1884440	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr20	43588802	rs2234200	A	G	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:105,80:0.43:185
chr20	43589041	rs2234197	G	A	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:148,99:0.40:247
chr20	43600673	rs6130717	C	G	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.100;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr20	43623658	rs6017460	C	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr20	43625565	rs67595276	CTTGA	C	1368.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:87,40:0.31:127
chr20	43681951	rs2284275	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr20	43803725	rs1983649	T	A	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr20	43933021	rs2072788	G	T	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:75,121:0.62:196
chr20	43933163	rs2233094	T	C	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:126,118:0.48:244
chr20	43964407	rs2072791	G	C	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	43976807	rs2078423	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr20	43976869	rs5841587	C	CT	6978.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=3.503;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=3.798;QD=19.60;ReadPosRankSum=1.992;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:154,202:0.57:356
chr20	43976875	.	G	GC	3206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DP=425;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=-3.908;QD=8.12;ReadPosRankSum=-1.591;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:237,158:0.40:395
chr20	43976991	rs2228384	A	G	19360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=1673;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.052;QD=11.70;ReadPosRankSum=-0.037;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:702,953:0.58:1655
chr20	43995410	rs6032142	C	T	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	44002665	rs2231626	C	G	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr20	44004155	rs10546815	CATT	C	2815.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:2,106:0.98:108
chr20	44006078	rs2231614	C	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	44038574	rs1127497	A	G	16614.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.979;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.88;ReadPosRankSum=1.506;SOR=0.366;set=HC	GT:AD:AF:DP	1/1:1,641:1.00:642
chr20	44048065	rs3092108	C	CG	19170.73	.	AC=2;AF=1.00;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	1/1:11,727:0.99:738
chr20	44049916	rs3092450	T	TC	1405.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.95;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	44052992	rs13217	G	A	27994.77	.	AC=2;AF=1.00;AN=2;DB;DP=1074;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,1061:1.00:1061
chr20	44053069	rs2741566	T	C	41353.77	.	AC=2;AF=1.00;AN=2;DB;DP=1592;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,1575:1.00:1575
chr20	44054349	rs707577	T	C	31977.77	.	AC=2;AF=1.00;AN=2;DB;DP=1255;set=Intersection	GT:AD:AF:DP	1/1:0,1241:1.00:1241
chr20	44099026	.	C	A	4840.77	.	AC=1;AF=0.500;AN=2;DP=662;set=Intersection	GT:AD:AF:DP	0/1:381,264:0.41:645
chr20	44141201	rs11470736	TCACACA	T	1767.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr20	44141331	rs6032259	A	G	3501.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:143,175:0.55:318
chr20	44144118	rs8125061	C	T	5028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.030;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:158,246:0.61:404
chr20	44163825	rs41304411	G	T	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-1.679;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:161,90:0.36:251
chr20	44163988	rs6032274	T	C	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:37,58:0.61:95
chr20	44170712	rs11594	C	A	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr20	44174423	rs765156	G	A	5856.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:182,285:0.61:467
chr20	44180813	rs17348421	G	A	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:99,163:0.62:262
chr20	44180868	rs17433181	A	G	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:58,81:0.58:139
chr20	44181723	rs2294559	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.12;ReadPosRankSum=-0.285;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr20	44181980	rs3817886	C	A	3879.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:180,202:0.53:382
chr20	44182081	rs6032299	A	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr20	44184285	rs6032305	G	A	79.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.96;ReadPosRankSum=0.524;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr20	44184375	rs2250860	T	C	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr20	44190705	rs3817887	T	G	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:162,175:0.52:337
chr20	44190996	rs2272956	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.09;ReadPosRankSum=0.319;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr20	44208011	rs7273669	C	T	3818.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:117,169:0.59:286
chr20	44238741	rs2245898	T	G	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:143,99:0.41:242
chr20	44259490	rs1487323	G	A	2539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=1.023;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:206,144:0.41:350
chr20	44259673	rs1487322	G	T	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:223,97:0.30:320
chr20	44279061	rs45546535	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr20	44314609	rs232729	A	G	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:173,99:0.36:272
chr20	44331043	rs6032445	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr20	44378577	rs380421	T	C	7781.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr20	44402970	rs73122720	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr20	44417643	rs6032537	A	G	11104.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr20	44417675	rs6032538	G	C	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr20	44418471	rs411945	G	C	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	44418564	rs3746493	A	G	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr20	44419363	.	CAAA	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.872;QD=2.89;ReadPosRankSum=0.408;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr20	44420637	rs2664539	G	A	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	44420682	rs2664591	T	C	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	44422373	rs6032544	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	44422705	rs6032545	G	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	44423843	rs6104350	C	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	44425026	rs11477536	CA	C	1530.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-0.874;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:17,111:0.87:128
chr20	44451901	rs8860	T	C	5585.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	44451943	rs188125171	C	T	5737.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:192,279:0.59:471
chr20	44452697	rs4629	C	A	26013.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.01;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,788:1.00:788
chr20	44452706	rs201505970	C	T	5190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=0.568;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:432,285:0.40:717
chr20	44453335	rs144529565	A	AC	10790.73	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:128,453:0.78:581
chr20	44456059	rs373018	T	C	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:3,110:0.97:113
chr20	44468931	rs197669	T	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	44468982	rs11418101	A	AC	4830.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	44469141	rs139958852	G	A	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:234,150:0.39:384
chr20	44469290	rs4638862	G	A	46509.77	.	AC=2;AF=1.00;AN=2;DB;DP=1820;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,1803:1.00:1803
chr20	44470648	.	C	CT	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.859;QD=1.42;ReadPosRankSum=2.139;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:241,74:0.23:315
chr20	44470676	rs3848713	T	C	6348.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr20	44472163	rs55931834	C	T	19573.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	1/1:1,737:1.00:738
chr20	44501458	rs6130959	A	G	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr20	44505973	rs2903808	T	C	11162.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr20	44506418	rs1045493	G	A	9387.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr20	44511627	rs11086984	C	T	4393.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:143,211:0.60:354
chr20	44515059	rs6094224	T	C	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	44516444	rs7268221	A	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	44517360	rs1516580	T	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	44518843	rs3817731	A	T	9477.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr20	44519643	rs2868362	G	A	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr20	44520237	rs3080212	CCTGCTG	CCTG,C	24773.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=682;set=Intersection	GT:AF:DP	1/1:1.00:562
chr20	44522005	rs742034	A	G	8427.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr20	44522594	rs4810476	A	G	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr20	44523248	rs2075962	T	C	12059.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr20	44523442	rs3215446	TC	T	32319.73	.	AC=2;AF=1.00;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	1/1:1,1005:1.00:1006
chr20	44523547	rs2075961	G	A	18089.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:0,681:1.00:681
chr20	44523782	rs4608591	C	T	17481.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,673:1.00:673
chr20	44525464	rs11468785	GC	G	1644.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	44526783	rs7270170	G	A	6251.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr20	44530838	rs553359	G	T	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	44538427	rs378114	T	C	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	44538484	rs435306	G	T	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	44540178	rs394643	A	G	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:300,185:0.38:485
chr20	44576502	rs7679	T	C	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:78,111:0.59:189
chr20	44578215	rs201440041	T	TG	847.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,41:0.43:96
chr20	44578776	rs6065910	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr20	44586694	rs11480828	C	CT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.651;QD=1.66;ReadPosRankSum=0.950;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:63,20:0.24:83
chr20	44588109	rs3746507	G	A	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:114,148:0.56:262
chr20	44594228	rs3746513	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr20	44596207	rs6032606	C	G	6486.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:257,320:0.55:577
chr20	44599839	rs6017715	G	C	4023.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:105,189:0.64:294
chr20	44639511	rs3918253	C	T	6862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=1.018;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:201,317:0.61:518
chr20	44640959	rs3918256	G	A	7631.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:226,363:0.62:589
chr20	44642406	rs2250889	G	C	2337.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:89,116:0.57:205
chr20	44642833	rs13969	A	C	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.992;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=1.527;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:24,47:0.66:71
chr20	44645010	rs20544	C	T	5207.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:157,255:0.62:412
chr20	44663475	rs11699481	T	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr20	44673546	rs2297197	C	G	3113.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:115,152:0.57:267
chr20	44674743	rs2297199	A	C	8336.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr20	44675136	rs3848727	T	C	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	44678348	rs6032635	G	A	8102.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr20	44680412	rs3746522	C	T	5846.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:218,284:0.57:502
chr20	44684978	rs2297201	C	T	4193.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:406,239:0.37:645
chr20	44691350	rs1537028	T	G	3591.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:299,198:0.40:497
chr20	44746982	rs1883832	T	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:262,173:0.40:435
chr20	44747086	rs745307	G	A	3634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.245;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:308,202:0.40:510
chr20	44755111	rs3746821	G	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr20	44756891	rs3765456	G	A	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:141,173:0.55:314
chr20	44762385	rs57147349	C	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.744;QD=10.55;ReadPosRankSum=0.048;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:27,33:0.55:60
chr20	44762525	.	G	A	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-1.598;QD=7.92;ReadPosRankSum=-0.083;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:63,49:0.44:112
chr20	44806643	rs34603854	G	A	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:200,180:0.47:380
chr20	44806727	rs35585191	G	A	4468.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:292,237:0.45:529
chr20	44839322	rs2425785	G	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr20	44856463	rs733379	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr20	44979641	rs4810503	TA	GC	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	44983517	rs12480667	G	A	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:146,199:0.58:345
chr20	44985307	rs911435	T	G	9108.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr20	44987318	rs1044369	C	G	7255.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:308,357:0.54:665
chr20	44996182	rs2257495	A	G	10509.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr20	44996305	rs2297057	A	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr20	44998791	rs2261964	C	T	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	45003326	rs2261213	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	45003788	rs2257545	T	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	45023247	rs2274676	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr20	45188971	rs910062	C	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr20	45192253	rs59207395	G	GA	1010.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=2.214;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:127,37:0.23:164
chr20	45192254	rs35374760	G	GAGAGAGA	898.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.931;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=0.796;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:128,34:0.21:162
chr20	45194904	rs202391	C	G	5234.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:211,251:0.54:462
chr20	45204266	rs1880898	G	A	3163.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:310,177:0.36:487
chr20	45212455	rs389905	T	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr20	45214403	rs73113722	A	C	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:30,63:0.68:93
chr20	45629941	rs3746492	G	A	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	45630157	rs6094549	T	G	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:101,114:0.53:215
chr20	45717954	rs866937	C	T	6767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.463;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=2.045;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:372,352:0.49:724
chr20	45725959	rs947018	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr20	45797749	.	TTC	T	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.378;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:153,28:0.15:181
chr20	45801319	rs3827049	T	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	45809652	rs2235907	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	45811860	rs8124918	A	G	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	45816594	rs3818012	G	A	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	45816639	rs3818013	A	G	7644.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	45816649	rs3818014	C	T	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.04;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	45839213	.	A	G	41.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr20	45853037	rs2664544	A	G	10894.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr20	45855921	.	T	G	1379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=0.239;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:95,75:0.44:170
chr20	45856045	rs1124178	A	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	45891189	rs2294560	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	45904992	rs17788224	G	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr20	45905651	rs3746485	T	C	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	45923383	rs2076402	G	T	11985.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:1,470:1.00:471
chr20	45923539	rs6066270	C	T	5285.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.254;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr20	46256424	rs6094752	C	T	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:171,137:0.44:308
chr20	46266543	.	G	GT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.962;QD=0.76;ReadPosRankSum=1.215;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:94,24:0.20:118
chr20	46267950	rs4810648	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	46279613	rs2745724	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr20	46279836	rs147879509	ACAG	A	2485.73	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:316,151:0.32:467
chr20	46282112	.	ATT	A	472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.802;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=4.615;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.395;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:139,45:0.24:184
chr20	46287012	rs444271	C	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	46292149	rs2235734	T	G	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	46294725	rs2076545	C	T	8541.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:2,335:0.99:337
chr20	46294864	rs13044281	A	G	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:188,90:0.32:278
chr20	46305112	rs11906661	C	T	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	46313135	rs2297586	C	T	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	46365571	rs3810526	A	G	4505.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:173,223:0.56:396
chr20	47242313	rs11553082	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr20	47244523	rs8121156	A	G	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.342;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:55,58:0.51:113
chr20	47244598	rs6095217	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr20	47249189	rs4413212	T	C	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:207,213:0.51:420
chr20	47253150	rs2664521	T	C	16909.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,666:1.00:666
chr20	47256300	rs6019339	C	T	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr20	47256479	rs4611698	T	C	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:71,59:0.45:130
chr20	47258613	rs4596036	G	A	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:180,184:0.51:364
chr20	47258763	rs16993997	C	T	7632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.032;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:429,387:0.47:816
chr20	47260936	rs6019344	A	G	4727.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:367,264:0.42:631
chr20	47261017	rs6066802	T	C	5080.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:403,279:0.41:682
chr20	47266452	rs41283552	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr20	47267480	rs41283556	A	G	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:207,145:0.41:352
chr20	47267940	rs61748372	G	A	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:77,80:0.51:157
chr20	47269233	rs41283558	C	G	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:94,114:0.55:208
chr20	47272963	rs3091871	G	GC	30008.73	.	AC=2;AF=1.00;AN=2;DB;DP=819;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=37.19;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,807:1.00:807
chr20	47273543	rs7271528	G	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr20	47273726	rs55904123	C	T	4898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.717;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-1.958;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:252,247:0.49:499
chr20	47276381	rs2294910	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr20	47276639	rs11086257	A	AT	4202.73	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:121,129:0.52:250
chr20	47282796	rs117698396	C	A	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:121,96:0.44:217
chr20	47282971	rs41314908	C	T	3206.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:197,167:0.46:364
chr20	47292577	.	G	GA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.146;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr20	47317529	rs12479966	C	T	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.047;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr20	47342814	rs12480096	G	A	2557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=0.212;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:171,135:0.44:306
chr20	47361519	rs3746816	T	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.489;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr20	47538333	rs2273101	C	T	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,51:0.47:109
chr20	47569112	rs2295030	C	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	47585642	rs3764683	T	C	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	47589122	rs2273102	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	47604825	rs4810905	G	A	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	47607756	rs199878164	C	G	4133.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:308,219:0.42:527
chr20	47614665	rs3764681	G	A	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr20	47615074	rs60107724	TA	T	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=1.380;QD=9.63;ReadPosRankSum=0.706;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,36:0.77:47
chr20	47621554	rs4810910	G	A	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr20	47628368	rs371203595	ATG	A	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.392;QD=1.89;ReadPosRankSum=-0.754;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:281,52:0.16:333
chr20	47632754	rs1473718	A	G	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr20	47634006	rs11086275	A	AT	8757.73	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:5,380:0.99:385
chr20	47639464	rs2426106	G	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	47648454	rs3091900	CA	C	1490.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:19,103:0.84:122
chr20	47649510	.	C	CA	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.752;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:208,53:0.20:261
chr20	47675176	rs2064853	T	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	47682893	rs2246266	C	T	8706.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr20	47683568	rs60161542	CAAAAAAAAAAA	C	676.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;QD=29.42;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:3,20:0.87:23
chr20	47683895	rs56145535	G	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	47691445	rs3092153	C	T	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	47731605	rs62210399	T	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	47770443	rs72347383	CA	C	1149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.426;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.833;QD=6.35;ReadPosRankSum=0.776;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:61,120:0.66:181
chr20	47770461	rs2273652	A	C	7169.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.292;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=10.695;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.206;QD=26.55;ReadPosRankSum=-2.410;SOR=0.086;set=HC	GT:AD:AF:DP	1/1:9,261:0.97:270
chr20	47839653	rs2273146	C	T	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr20	47842853	rs238162	C	T	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	47845220	rs238165	T	A	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.224;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	47846586	rs171130	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	47850182	rs238148	C	T	6631.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	47852822	rs238152	G	A	10261.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr20	47856037	rs238156	T	G	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	47859015	rs238204	A	G	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	47859254	rs71186444	CTTTTTTTTTTTTTT	C	4151.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr20	47863409	rs144647523	ATT	A	2691.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.288;QD=24.03;ReadPosRankSum=0.810;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:16,96:0.86:112
chr20	47865372	rs238208	G	A	17095.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr20	47865509	rs238209	G	A	19272.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.434;ClippingRankSum=0.000;DB;DP=813;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.09;ReadPosRankSum=1.006;SOR=0.411;set=HC	GT:AD:AF:DP	1/1:2,766:1.00:768
chr20	47865924	rs78573470	T	C	5078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=3.090;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:255,257:0.50:512
chr20	47866411	rs6063378	G	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	47869191	rs6122777	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr20	47872327	rs238220	A	G	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	47872377	rs238221	C	G	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr20	47874239	rs11295162	CT	C	3767.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.602;QD=9.35;ReadPosRankSum=-2.570;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:77,326:0.81:403
chr20	47881581	rs6063380	A	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	47882893	rs238178	T	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	47886684	rs57950	G	A	5796.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr20	47892270	rs238191	T	C	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	47956674	rs10532261	TATA	T	330.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	47990250	rs2229006	G	C	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:155,149:0.49:304
chr20	48099623	rs74361372	C	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.484;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr20	48099637	rs34725736	CTTT	C	1047.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.042;QD=11.51;ReadPosRankSum=2.382;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:54,37:0.41:91
chr20	48129706	rs5629	G	T	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:151,148:0.49:299
chr20	48130628	rs6019879	T	C	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr20	48130982	rs7274202	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr20	48140682	rs5628	C	T	6435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.996;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:338,333:0.50:671
chr20	48184734	rs7262428	G	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	48184839	rs566544	TT	GG	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	48184857	rs566508	C	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	48184871	rs566468	A	G	826.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	48184872	rs566466	T	G	826.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	48252914	rs235035	C	T	4947.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:233,256:0.52:489
chr20	48257149	rs421801	C	T	10458.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr20	48259034	rs2235855	A	G	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	48273299	rs4810968	T	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr20	48300990	rs6019972	C	T	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	48301146	rs6512586	G	A	12712.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,502:1.00:502
chr20	48330030	rs12329570	G	C	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr20	48330045	rs117026282	G	A	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:128,128:0.50:256
chr20	48429316	rs11281224	A	AGACGGAGG	46.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:14,3:0.18:17
chr20	48429508	rs58677849	GG	CC	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;JOINED;set=Intersection	GT:AD:AF:DP	0/1:69,51:0.42:120
chr20	48456238	rs2025958	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr20	48467300	.	G	GT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.269;QD=0.63;ReadPosRankSum=1.745;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:101,20:0.17:121
chr20	48467560	rs532237	G	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	48479356	rs3092598	TATGA	T	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	48491207	rs56309244	G	A	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:244,265:0.52:509
chr20	48491258	rs542234	T	G	26605.77	.	AC=2;AF=1.00;AN=2;DB;DP=1018;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,1008:1.00:1008
chr20	48494650	rs6020100	A	G	157.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr20	48522124	rs78700554	T	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr20	48522330	rs495337	G	A	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:99,124:0.56:223
chr20	48522585	rs492702	G	A	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	48524827	rs2769982	A	G	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	48561893	rs4810993	A	G	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	48562083	rs11473738	G	GTTGGACACC	4143.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	48562116	rs79598075	T	C	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.628;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.297;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.817;QD=7.63;ReadPosRankSum=2.337;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:33,24:0.42:57
chr20	48562152	rs117126892	G	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr20	48562797	rs34310744	C	CT	533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.195;QD=4.94;ReadPosRankSum=0.115;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:62,46:0.43:108
chr20	48568503	rs2281216	C	T	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:56,81:0.59:137
chr20	48599473	rs113842434	AC	A	822.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.38;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	48713049	rs6012831	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	48729677	rs126907	C	G	17794.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=25.60;SOR=1.050;set=HC	GT:AD:AF:DP	1/1:0,695:1.00:695
chr20	48770159	rs232733	T	C	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	48892144	rs11086306	GT	G	1058.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=2.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.575;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:118,84:0.42:202
chr20	48894674	rs13044283	A	C	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:88,99:0.53:187
chr20	48894872	rs3761180	T	C	13511.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.02;ReadPosRankSum=1.976;SOR=0.357;set=HC	GT:AD:AF:DP	1/1:4,536:0.99:540
chr20	48894919	rs12625213	C	T	2268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-2.173;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:109,109:0.50:218
chr20	49181345	rs16995294	T	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr20	49191228	rs1885177	A	C	3578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.142;QD=8.04;ReadPosRankSum=2.778;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:251,194:0.44:445
chr20	49194866	rs3215684	A	AT	893.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr20	49210953	rs914458	G	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr20	49214156	rs6020624	A	G	4601.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:230,238:0.51:468
chr20	49225953	rs73615305	A	G	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:133,109:0.45:242
chr20	49227294	rs4811083	T	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:48,35:0.42:83
chr20	49227544	rs144167038	G	GGGCTTAGTGCCGGGCC	5916.73	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:174,154:0.47:328
chr20	49236478	rs6122953	G	A	2554.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:128,130:0.50:258
chr20	49354351	.	CT	C	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.003;QD=4.29;ReadPosRankSum=-0.069;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr20	49411698	rs2272962	G	T	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.281;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:62,69:0.53:131
chr20	49434669	rs5841815	TA	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.617;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.277;QD=0.79;ReadPosRankSum=0.516;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:104,33:0.24:137
chr20	49448452	rs11905485	T	C	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr20	49507892	rs761240	T	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	49551780	rs11483542	T	TA	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=2.418;QD=4.37;ReadPosRankSum=1.492;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr20	49575334	rs2281282	A	C	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:75,82:0.52:157
chr20	49620783	rs1054268	G	T	7181.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:352,362:0.51:714
chr20	49621149	rs6122993	T	C	4574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-0.176;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:279,241:0.46:520
chr20	49621399	rs4811110	G	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:64,56:0.47:120
chr20	50008006	rs71192523	A	AG	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.796;QD=2.46;ReadPosRankSum=-0.677;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr20	50015300	rs11478012	GA	G	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.000;QD=6.35;ReadPosRankSum=-0.745;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:51,49:0.49:100
chr20	50071258	rs228840	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr20	50092027	rs6013193	T	G	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	50092287	rs6021231	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	50223975	rs2273090	G	T	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:57,66:0.54:123
chr20	50224161	rs2273089	C	T	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-0.634;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:96,86:0.47:182
chr20	50224206	rs3818004	G	A	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr20	50225206	rs3827032	G	A	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:64,61:0.49:125
chr20	50225235	rs6021312	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr20	50230462	rs2235863	A	G	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-0.013;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:48,62:0.56:110
chr20	50238545	rs2235862	A	G	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:113,124:0.52:237
chr20	50241714	rs2235859	C	A	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:97,90:0.48:187
chr20	50243941	rs1467413	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.62;ReadPosRankSum=-1.003;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr20	50244098	rs2426317	T	C	5988.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr20	50245732	rs2426318	G	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr20	50255762	rs2426333	T	C	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr20	50255849	rs6063682	A	C	2089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=0.367;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:138,112:0.45:250
chr20	50256107	rs2426334	T	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	50273749	rs6021355	G	A	2280.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:88,112:0.56:200
chr20	50286484	rs5841856	T	TA	2494.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.387;QD=16.63;ReadPosRankSum=-1.055;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:15,135:0.90:150
chr20	50287553	rs6013248	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr20	50287736	rs2255341	C	T	8203.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:460,419:0.48:879
chr20	50287790	rs2255342	A	G	21624.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:2,823:1.00:825
chr20	50287925	rs2255358	A	G	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	50290654	rs6091346	T	C	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr20	50292763	.	G	GA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DP=406;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=1.411;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:267,57:0.18:324
chr20	50305755	rs6067898	G	A	12248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=-0.205;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:318,323:0.50:641
chr20	50305761	rs6067899	G	A	12020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.87;ReadPosRankSum=-0.906;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:297,308:0.51:605
chr20	50310466	rs6021389	T	C	4902.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:304,261:0.46:565
chr20	50310483	rs143733288	A	ATC	9095.73	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:302,239:0.44:541
chr20	50310709	rs6013259	G	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,66:0.58:113
chr20	50314200	rs1205690	A	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr20	50329416	rs1205698	T	C	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr20	50329704	rs1205699	G	A	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	50342285	rs1205708	A	G	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-1.452;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:84,87:0.51:171
chr20	50342555	rs1205709	C	T	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	50405502	rs17802735	C	G	4252.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:248,218:0.47:466
chr20	50407966	rs13038893	C	T	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:135,148:0.52:283
chr20	50408482	rs6013281	A	G	13310.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr20	50705211	rs2273382	A	G	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	50705584	rs973341	C	T	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr20	50713652	rs10715971	TA	T	2689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.506;QD=5.91;ReadPosRankSum=1.688;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:253,202:0.44:455
chr20	50713992	.	A	AT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.750;QD=1.84;ReadPosRankSum=0.306;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr20	50775605	rs6021760	G	C	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:128,135:0.51:263
chr20	50777026	rs3818198	A	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,41:0.43:96
chr20	50781298	rs72411807	T	TAA	892.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chr20	50781725	rs6021770	G	A	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:83,94:0.53:177
chr20	50782102	rs2038429	T	C	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=1.898;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr20	50782303	rs6021771	A	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	50782343	rs6021772	C	A	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:86,82:0.49:168
chr20	50782608	rs2273472	G	T	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=2.768;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:28,27:0.49:55
chr20	51802132	rs2010156	T	C	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:95,89:0.48:184
chr20	51870849	rs739870	T	C	12812.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr20	52185814	rs4602270	C	A	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=2.558;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr20	52557934	.	GGT	G	49.73	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:93,16:0.15:109
chr20	52573933	rs41310835	A	G	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:99,105:0.51:204
chr20	52583397	.	G	A	3233.77	.	AC=1;AF=0.500;AN=2;DP=261;set=Intersection	GT:AD:AF:DP	0/1:96,153:0.61:249
chr20	52592140	rs11474654	G	GTA	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=8.12;ReadPosRankSum=1.509;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr20	52611427	rs146234679	TACACACAC	T	3272.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:74,88:0.54:162
chr20	52645534	rs466264	T	C	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr20	52674537	.	A	AT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=1.734;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr20	52674615	rs465184	A	G	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:122,139:0.53:261
chr20	52675188	rs394732	G	T	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	52684741	rs6068764	G	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr20	52774579	rs1570670	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr20	52774601	rs2274130	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr20	52774903	rs2274132	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.80;ReadPosRankSum=1.017;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr20	52775528	rs2296239	C	T	4814.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:332,258:0.44:590
chr20	52775728	rs2296240	A	G	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr20	52779082	.	C	T	334	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=2;HapScore=2;MGOF=44;MMLQ=23;MQ=60.0;NF=14;NR=2;PP=334;QD=23.0482007842;SC=GGCACCGTGGCATAGATGCTG;SbPval=0.57;Source=Platypus;TC=17;TCF=15;TCR=2;TR=16;WE=52779090;WS=52779072;set=Platypus	GT:AD:AF:DP	1/1:1,16:0.94:17
chr20	52781091	rs6068816	C	T	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:225,166:0.42:391
chr20	52781264	rs6013905	T	C	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	52782438	rs4809958	T	G	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr20	52786073	rs4809960	T	C	2584.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:116,123:0.51:239
chr20	52786219	rs2296241	G	A	7819.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:302,384:0.56:686
chr20	52840743	rs11472518	C	CTT,CTTTTT	2707.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.62;ReadPosRankSum=1.379;SOR=0.841;set=HC	GT:AD:AF:DP	1/2:10,38,62:0.35,0.56:110
chr20	53259996	.	G	A	3023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-0.563;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:217,163:0.43:380
chr20	53260140	rs41274718	C	T	3552.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:170,176:0.51:346
chr20	54823684	rs368604087	GTC	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.241;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:39,7:0.15:46
chr20	54823779	rs13044293	G	T	6373.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.215;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=3.882;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=-0.501;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:1,241:1.00:242
chr20	54961463	rs1047972	T	C	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr20	54963149	rs67542863	C	CGACAAGACCAACCTCCATGTGGGTTTATAAATGTGAATGAGATTACAGATTATTCAATTTA	680.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=-0.275;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr20	54974424	rs2426617	C	A	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	55048496	rs11471796	T	TGAG	1719.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,45:0.51:89
chr20	55070268	rs34552628	A	T	2400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-2.484;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:100,114:0.53:214
chr20	55070539	rs3827107	G	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.80;ReadPosRankSum=-0.349;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr20	55071639	rs6069763	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr20	55072472	rs6024911	A	G	2396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.241;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:129,119:0.48:248
chr20	55088404	rs1059768	A	G	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:96,94:0.49:190
chr20	55100005	rs2426632	T	C	2737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=783;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-7.924;QD=3.51;ReadPosRankSum=-4.444;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:579,201:0.26:780
chr20	55100054	rs2019515	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.310;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=15.089;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-14.631;QD=0.22;ReadPosRankSum=-3.270;SOR=2.074;set=HC	GT:AD:AF:DP	0/1:281,24:0.08:305
chr20	55108617	rs3209183	C	A	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	55111371	rs2296130	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:117,63:0.35:180
chr20	55205661	rs6025019	C	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr20	55206241	.	G	GT	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DP=415;ExcessHet=3.0103;FS=3.526;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.996;QD=0.40;ReadPosRankSum=0.544;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:323,61:0.16:384
chr20	55211581	rs5842120	C	CA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.064;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr20	55212711	rs6025024	T	G	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr20	55748206	rs2148328	G	A	9220.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr20	55800937	rs6070031	C	T	10007.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr20	55909211	.	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.10;ReadPosRankSum=0.193;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr20	55910542	rs3764674	T	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr20	55913502	rs113456122	C	CT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.062;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr20	55918014	rs2236330	A	G	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	55929881	rs4811837	T	C	12248.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr20	55967629	rs138734120	C	T	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:95,100:0.51:195
chr20	56064099	rs116593113	TT	CC	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;JOINED;set=Intersection	GT:AD:AF:DP	0/1:96,78:0.45:174
chr20	56064157	rs6128051	C	T	4785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.671;QD=9.81;ReadPosRankSum=-1.733;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:245,243:0.50:488
chr20	56064267	rs6099656	T	C	4169.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:178,212:0.54:390
chr20	56071399	rs62204254	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr20	56071416	rs62204255	C	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr20	56078690	rs6128059	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr20	56083606	rs55924405	T	C	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=1.328;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:52,57:0.52:109
chr20	56089869	rs11086612	GT	G	4009.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=706;ExcessHet=3.0103;FS=1.095;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.968;QD=6.07;ReadPosRankSum=2.022;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:316,345:0.52:661
chr20	56098070	rs11477755	GA	G	1391.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,73:0.50:147
chr20	56098733	rs6025606	T	C	3790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.730;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:235,193:0.45:428
chr20	56099114	rs6070128	C	G	7507.77	.	AC=1;AF=0.500;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	0/1:465,387:0.45:852
chr20	56099305	rs11699220	G	A	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=1.504;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:40,42:0.51:82
chr20	56136536	rs1042521	A	G	13023.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr20	56137798	rs1062600	G	A	11718.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr20	56137807	rs1042523	A	G	11733.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr20	56137834	rs1062601	A	G	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr20	56137895	rs707555	G	C	6873.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr20	56138040	rs2070755	G	C	7559.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr20	56139403	rs2070756	T	C	13884.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr20	56140980	rs1042531	T	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr20	56179422	rs6064572	C	A	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:138,133:0.49:271
chr20	56179586	rs6123710	G	A	6322.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:236,311:0.57:547
chr20	56182296	rs6123711	A	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr20	56186884	rs2865394	T	C	12143.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr20	56190634	rs2073145	C	T	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr20	56191172	rs11468882	CAG	C	15195.73	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr20	56227532	rs6025699	T	C	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:187,152:0.45:339
chr20	56228019	rs8183538	G	C	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:76,70:0.48:146
chr20	56265389	rs1556175	G	A	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:136,160:0.54:296
chr20	56726107	rs6070358	C	T	16088.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,638:1.00:638
chr20	56793546	rs583987	A	G	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	56793706	rs584855	G	A	11750.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr20	56793764	rs1192511	G	A	7890.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr20	56796267	rs521615	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	56803676	.	C	CCCG	654.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr20	56807969	rs3818744	A	G	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	56811400	rs474212	C	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	56820702	rs595292	G	T	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr20	56820880	rs3746406	C	T	14638.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,565:1.00:565
chr20	56821127	rs3746405	A	G	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	56822236	rs1541117	C	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	56822536	rs4811972	G	A	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	56823391	.	TTTTTTTTA	T	348.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.684;QD=19.37;ReadPosRankSum=0.440;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr20	56823395	rs518929	T	A	106.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.050;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.912;QD=5.93;ReadPosRankSum=-0.244;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr20	56825826	rs2282205	A	C	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr20	56826934	rs6064631	T	A	4983.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr20	56838389	rs6128295	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	56846580	rs6015238	T	A	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	56847816	rs6123789	T	C	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:84,69:0.45:153
chr20	56861637	rs6026181	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	57227427	.	AC	A	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=1.350;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr20	57244493	rs2296524	G	A	7232.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr20	57246478	rs11481330	C	CT	615.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=38.48;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	57246484	rs34865822	G	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.73;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	57246487	.	TGTGTGG	T	508.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.87;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	57266134	rs6015338	G	A	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	57266700	rs6123822	T	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	57266749	.	CTTTTTT	C	5122.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.960;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=3.054;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=0.419;QD=34.38;ReadPosRankSum=1.260;SOR=0.288;set=HC	GT:AD:AF:DP	1/1:2,147:0.99:149
chr20	57267942	rs6092682	T	C	1470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-0.524;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:100,79:0.44:179
chr20	57268994	rs6100166	G	C	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:76,97:0.56:173
chr20	57269495	rs7262862	G	A	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-0.726;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:165,128:0.44:293
chr20	57273885	rs2296526	T	C	10881.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr20	57274077	rs6092684	T	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.057;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr20	57274151	rs2296528	G	C	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	57275949	rs6070554	A	C	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	57280575	rs6100174	T	C	7564.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr20	57282107	rs113224784	G	A	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:160,147:0.48:307
chr20	57293163	rs185194530	G	A	8502.77	.	AC=1;AF=0.500;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	0/1:427,432:0.50:859
chr20	57299027	.	GGAGGAGGAGGAA	G	77.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=8.648;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=-0.416;QD=0.56;ReadPosRankSum=-0.633;SOR=1.928;set=HC	GT:AD:AF:DP	0/1:128,12:0.09:140
chr20	57299030	rs201658287	GGAGGAGGAA	G	4726.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=6.471;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.470;QD=36.08;ReadPosRankSum=0.966;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:12,119:0.91:131
chr20	57360653	rs61349087	C	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr20	57360720	rs144252791	AGAAAGAAAGAAG	A	1098.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=42.26;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	57360930	rs6092694	T	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	57415110	rs1800900	A	G	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:57,84:0.60:141
chr20	57415995	rs1800905	A	G	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:192,175:0.48:367
chr20	57429844	rs111796234	C	T	3299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.659;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-0.201;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:235,172:0.42:407
chr20	57430477	rs73306256	C	G	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr20	57474720	rs35714680	GCA	G	1347.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=37.44;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	57475191	rs13831	A	G	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	57478807	rs7121	C	T	5494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-0.319;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:312,282:0.47:594
chr20	57556295	rs151333	C	T	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	57565943	rs163782	G	C	9290.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr20	57566637	rs149265	C	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	57569617	rs374709307	CA	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=5.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.216;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr20	57569816	rs7341	G	T	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr20	57570568	rs13720	G	A	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	57570854	rs3787492	G	A	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:107,100:0.48:207
chr20	57571763	rs9760	A	G	20403.77	.	AC=2;AF=1.00;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	1/1:0,811:1.00:811
chr20	57572614	rs417847	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	57572675	rs163785	A	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	57582285	rs71181993	C	CCGGCCT	2114.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.56;QD=44.06;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	57599016	rs163777	T	G	7903.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr20	57612390	rs151359	C	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr20	57613704	rs61329417	CA	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-1.292;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr20	57767601	.	C	T	13525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.123;ClippingRankSum=0.000;DP=1518;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.084;QD=9.06;ReadPosRankSum=-1.045;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:790,703:0.47:1493
chr20	57828923	rs259957	A	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	57829301	rs259956	T	C	4175.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:267,217:0.45:484
chr20	57829821	rs3041675	C	CTT	2088.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:42,57:0.58:99
chr20	58330128	rs1182477	G	C	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	58342130	rs2426831	T	A	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	58416667	rs6064846	T	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr20	58420336	rs1416388	G	A	3743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.993;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:149,188:0.56:337
chr20	58425413	rs2865768	C	T	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	58441001	rs186756538	A	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.68;ReadPosRankSum=0.431;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr20	58466998	rs34313076	T	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr20	58559654	rs1474909	C	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr20	59053278	rs73144167	G	A	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:121,111:0.48:232
chr20	59091946	rs6064934	A	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.71;ReadPosRankSum=0.955;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr20	59224926	rs846222	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr20	59827498	.	TCGG	T	1668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.34;ReadPosRankSum=4.018;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:47,44:0.48:91
chr20	59827559	.	C	T	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.103;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:50,55:0.52:105
chr20	59829847	rs3752252	C	T	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:201,180:0.47:381
chr20	59908320	rs11467480	TAC	T	2164.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:95,98:0.51:193
chr20	60145672	rs2252560	T	G	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=1.049;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:82,51:0.38:133
chr20	60293919	rs2892179	C	A	21402.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.535;ClippingRankSum=0.000;DB;DP=829;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.33;ReadPosRankSum=0.346;SOR=0.466;set=HC	GT:AD:AF:DP	1/1:1,812:1.00:813
chr20	60294246	rs11440327	A	AT	1678.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:131,113:0.46:244
chr20	60348084	rs34937312	C	T	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:148,204:0.58:352
chr20	60485327	rs1776237	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	60485627	rs2427240	C	T	8695.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr20	60498832	rs11484270	A	AC	813.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr20	60503350	rs6142884	A	G	16330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DB;DP=1662;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-1.172;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:812,834:0.51:1646
chr20	60509209	rs3753045	C	T	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:143,119:0.45:262
chr20	60509387	rs3827115	TG	AA	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;JOINED;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr20	60511734	rs4925209	A	G	1807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.669;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.78;ReadPosRankSum=-0.341;SOR=0.310;set=HC	GT:AD:AF:DP	0/1:36,47:0.57:83
chr20	60511737	rs4925323	T	C	1773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.93;ReadPosRankSum=1.277;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:43,46:0.52:89
chr20	60572663	rs2296081	C	A	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr20	60573983	rs2296082	A	G	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	60574216	rs2296083	C	T	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	60582540	rs2281735	T	A	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	60584328	rs2296087	T	A	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	60640305	rs200074661	TGCCAGG	T	704.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.84;QD=35.24;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	60704117	rs4925345	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	60709530	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.17;ReadPosRankSum=0.361;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr20	60733639	rs6142963	A	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	60733672	rs6062094	C	T	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	60734890	.	G	C	1084.77	.	AC=1;AF=0.500;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr20	60735098	rs6121926	T	C	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr20	60739079	rs56285165	G	A	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	60739092	rs61598322	C	T	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	60739353	rs146750123	GGGGCAAGGA	G	2197.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	60740362	rs6142964	G	A	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	60740447	rs2295208	C	T	11803.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr20	60740584	rs60919036	CTGCGTGCTGGGCTCG	CCGTGCTGGGCTCG,C	26392.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=667;set=Intersection	GT:AF:DP	1/1:1.00:609
chr20	60740587	.	CGTGCTGGGCTCGA	C	15596.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.853;ClippingRankSum=0.000;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.65;ReadPosRankSum=-0.815;SOR=0.663;set=HC	GT:AD:AF:DP	1/1:3,605:1.00:608
chr20	60740600	.	A	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=23;MQ=59.98;NF=115;NR=157;PP=2965;QD=20;SC=GCTGGGCTCGAGCGTAAGCGC;SbPval=0.47;Source=Platypus;TC=286;TCF=117;TCR=169;TR=272;WE=60740608;WS=60740574;set=Platypus	GT:AD:AF:DP	1/1:14,272:0.95:286
chr20	60773041	rs6062140	G	C	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.252;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	60773684	rs4925355	C	T	4571.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	60774035	rs6142990	A	G	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr20	60776182	rs1054885	G	A	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	60791404	rs3787429	C	T	3650.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:114,106:0.48:220
chr20	60791422	rs3787430	C	T	3152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=4.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.33;ReadPosRankSum=3.093;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:89,83:0.48:172
chr20	60792029	rs1739583	G	A	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:75,77:0.51:152
chr20	60808026	rs6089695	C	T	16386.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr20	60831300	rs6089706	G	A	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	60848248	rs6061476	G	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	60848348	rs2236526	C	T	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	60857034	rs2274938	G	A	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr20	60859381	rs4925225	A	G	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	60859430	rs11306058	AT	A	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:7,52:0.88:59
chr20	60859486	rs4925226	A	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	60864390	rs3746657	C	T	4727.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	60881330	rs2427273	G	A	13897.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr20	60881643	rs2427274	T	C	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	60881780	rs2427275	T	C	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr20	60882277	rs2427277	C	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.73;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	60882888	rs2427278	A	G	10971.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr20	60884651	rs6143020	T	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	60884695	.	T	TGGGGGGGTGGGAGGGGGTGGG	250.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=35.82;ReadPosRankSum=0.842;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr20	60885142	rs2379129	C	A	10427.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,405:1.00:405
chr20	60885448	rs944897	A	G	12003.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr20	60886611	rs2297590	C	T	5778.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:242,287:0.54:529
chr20	60887581	rs944895	G	A	15374.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr20	60890375	rs6062210	C	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	60891288	rs2065578	A	G	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	60892116	rs2236521	G	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	60892526	rs2427281	A	G	13523.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=0.993;SOR=0.431;set=HC	GT:AD:AF:DP	1/1:3,530:0.99:533
chr20	60892692	rs6062216	C	T	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr20	60893639	rs6089732	G	C	4917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=1.176;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:260,265:0.50:525
chr20	60895738	rs6089346	A	G	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr20	60897071	rs2274936	A	G	5831.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=-1.084;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:2,230:0.99:232
chr20	60897487	rs2274934	C	T	7197.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr20	60897721	rs3737137	C	T	3405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.099;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.484;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:151,169:0.53:320
chr20	60898505	rs2379128	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	60899206	rs2427283	C	T	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr20	60900481	rs2427284	A	G	13240.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,512:1.00:512
chr20	60900579	rs2427285	C	A	17872.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,688:1.00:688
chr20	60902214	rs944894	G	A	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	60902490	rs944892	C	T	34950.77	.	AC=2;AF=1.00;AN=2;DB;DP=1355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,1338:1.00:1338
chr20	60902544	rs944891	A	C	42035.77	.	AC=2;AF=1.00;AN=2;DB;DP=1643;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,1624:1.00:1624
chr20	60902883	rs4925375	C	T	11113.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr20	60904421	rs3065756	GCAGCC	G	285.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr20	60904853	rs2427286	T	C	14013.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:1,554:1.00:555
chr20	60905717	rs2095235	T	C	15266.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;MQRankSum=0.087;QD=25.44;ReadPosRankSum=-1.243;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:2,598:1.00:600
chr20	60905878	rs3810548	A	G	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	60906055	rs73613564	C	T	15527.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,609:1.00:609
chr20	60906269	rs35653162	C	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	60906277	rs112751143	T	TG	523.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=34.92;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	60907446	rs2151513	T	C	4908.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr20	60907675	rs6142734	G	A	16829.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,662:1.00:662
chr20	60908882	rs12481057	G	A	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr20	60908892	rs141833594	A	AGTGGG	1502.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:175,85:0.33:260
chr20	60908908	.	G	GTGGGC	3994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.433;ClippingRankSum=0.000;DP=391;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=61.62;MQRankSum=3.226;QD=10.94;ReadPosRankSum=4.728;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:166,199:0.55:365
chr20	60908964	rs13044266	G	A	31358.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.91;QD=45.51;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,689:1.00:689
chr20	60908969	rs13042941	T	C	32241.77	.	AC=2;AF=1.00;AN=2;DB;DP=756;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.84;QD=43.39;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,743:1.00:743
chr20	60909060	rs13038331	A	G	22382.77	.	AC=2;AF=1.00;AN=2;DB;DP=863;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,854:1.00:854
chr20	60909466	rs2379127	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	60909518	rs1105019	G	T	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	60909809	.	C	CAGGGCTCAGGGCGAGGGCG,CAGGGCTCAGGGCGAGGGCGAGGGCGAGGGCG	1935.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=110;set=Intersection	GT:AF:DP	1/2:0.65,0.26:65
chr20	60909832	.	T	C	267	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=4;HapScore=2;MGOF=121;MMLQ=22;MQ=58.93;NF=7;NR=13;PP=267;QD=15.0885606274;SC=AGGGCGAGGGTGAGGGCGCTG;SbPval=0.88;Source=Platypus;TC=48;TCF=23;TCR=25;TR=20;WE=60909840;WS=60909822;set=Platypus	GT:AD:AF:DP	1/0:28,20:0.42:48
chr20	60909974	rs12625368	T	C	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	60911958	rs2890083	G	A	31364.77	.	AC=2;AF=1.00;AN=2;DB;DP=1251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,1218:1.00:1218
chr20	60912683	rs2427289	T	C	14616.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr20	60913495	rs2151512	T	C	10430.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr20	60917294	rs4925380	G	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	60920624	rs4925385	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	60920887	rs11204472	G	A	10351.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr20	60921044	rs4925386	T	C	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	60921643	rs4925229	T	C	10672.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:1,400:1.00:401
chr20	60921701	rs4925387	A	G	17651.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,694:1.00:694
chr20	60921896	rs4925388	A	G	13847.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:1,520:1.00:521
chr20	60927349	rs483876	C	T	23293.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,892:1.00:892
chr20	60927412	rs624313	G	A	22676.77	.	AC=2;AF=1.00;AN=2;DB;DP=871;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,863:1.00:863
chr20	60927482	rs482220	G	A	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.71;SOR=1.341;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr20	60927538	rs623834	C	T	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	60927551	rs482010	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	60937597	rs477859	A	G	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr20	60941869	rs144826578	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.725;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.18;ReadPosRankSum=0.355;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr20	60963346	.	C	CT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.027;QD=0.65;ReadPosRankSum=1.778;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:132,28:0.17:160
chr20	60963494	rs6089356	C	T	3680.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:240,195:0.45:435
chr20	60966318	rs6089219	G	T	6278.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	60988419	rs373250283	C	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr20	60989365	rs3810553	C	T	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:79,126:0.61:205
chr20	60990075	rs911078	T	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr20	60990170	rs911079	C	T	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:87,81:0.48:168
chr20	60990606	rs3810554	A	C	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,51:0.52:98
chr20	60991168	rs150469970	G	A	2016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=2.862;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:164,112:0.41:276
chr20	61039958	rs6061550	T	C	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr20	61040125	rs113912772	G	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr20	61040453	rs6061243	C	G	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.455;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:112,83:0.43:195
chr20	61040668	rs112618954	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr20	61040951	rs6587239	C	T	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:80,82:0.51:162
chr20	61041653	rs6061244	G	C	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,44:0.58:76
chr20	61041687	rs6121610	C	T	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=-2.479;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr20	61048549	rs41305803	G	A	11881.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,456:1.00:456
chr20	61050379	rs6142775	T	G	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr20	61143487	rs3934574	T	C	23844.77	.	AC=2;AF=1.00;AN=2;DB;DP=915;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,909:1.00:909
chr20	61143945	rs3934573	T	G	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=-0.760;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr20	61143951	rs45612436	G	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=-1.913;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:31,21:0.40:52
chr20	61150928	rs12624794	A	G	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	61150959	rs116355995	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	61162267	rs6062251	T	C	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr20	61162423	rs6062250	T	C	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr20	61167632	rs11483745	G	GT	1913.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.103;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=1.172;QD=14.95;ReadPosRankSum=0.813;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:20,108:0.84:128
chr20	61167883	rs6143064	G	A	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	61167934	rs6143063	T	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	61273717	rs6122141	G	C	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	61287900	.	A	T	12821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.176;ClippingRankSum=0.000;DP=1501;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=1.648;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:810,680:0.46:1490
chr20	61289958	rs2427369	G	A	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr20	61292373	rs144381587	G	GAGCCCCC	5931.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	61303274	rs148272280	G	A	11570.77	.	AC=1;AF=0.500;AN=2;DB;DP=1115;set=Intersection	GT:AD:AF:DP	0/1:534,569:0.52:1103
chr20	61326276	rs2427393	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr20	61326380	rs2427394	C	T	16972.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.31;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,645:1.00:645
chr20	61326439	rs145607453	T	TCTGCACCTGCACCTGCAC	3250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=6.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.340;QD=6.16;ReadPosRankSum=3.125;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:335,193:0.37:528
chr20	61331678	rs4809531	C	A	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr20	61340558	rs6090405	C	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:48,45:0.48:93
chr20	61428423	rs11696245	A	C	7727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=842;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-2.398;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:422,404:0.49:826
chr20	61441035	rs2277772	G	A	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:137,132:0.49:269
chr20	61441797	rs2277771	A	G	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:278,243:0.47:521
chr20	61443547	rs2075776	A	G	4586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-3.695;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:243,241:0.50:484
chr20	61443687	rs6122311	G	A	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:128,116:0.48:244
chr20	61444600	.	C	A	323	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=4;HapScore=2;MGOF=18;MMLQ=27;MQ=52.42;NF=3;NR=13;PP=323;QD=22.3607007842;SC=CCCAGGCCCCCGCCCAGCAGG;SbPval=0.56;Source=Platypus;TC=28;TCF=5;TCR=23;TR=16;WE=61444608;WS=61444590;set=Platypus	GT:AD:AF:DP	1/0:12,16:0.57:28
chr20	61444939	rs11543349	G	C	3859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.487;QD=9.51;ReadPosRankSum=-0.015;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:205,201:0.50:406
chr20	61448969	rs2273079	C	T	4482.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:221,232:0.51:453
chr20	61449057	rs2273080	C	T	3281.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:194,165:0.46:359
chr20	61450139	rs112169318	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr20	61453380	rs113952932	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:79,54:0.41:133
chr20	61456440	rs187176638	G	A	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-1.213;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr20	61456464	rs182918131	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.181;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-0.282;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr20	61458547	rs2249766	A	T	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:53,80:0.60:133
chr20	61460338	rs6062700	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr20	61462004	.	A	AC	772.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.00;MQRankSum=4.588;QD=38.64;ReadPosRankSum=1.739;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr20	61462011	rs57884674	T	C	781.90	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.73;MQRankSum=4.588;QD=39.10;ReadPosRankSum=0.087;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr20	61462012	rs61526618	G	C	781.90	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.73;MQRankSum=4.588;QD=39.10;ReadPosRankSum=-0.087;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr20	61462024	rs8119815	A	C	473.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=3.479;QD=43.07;ReadPosRankSum=-1.430;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr20	61462033	rs184924201	A	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.15;MQRankSum=1.645;QD=17.75;ReadPosRankSum=-0.126;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr20	61467898	rs910152	G	C	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr20	61468571	rs2294995	T	C	3668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=3.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.005;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:189,187:0.50:376
chr20	61512185	rs41282984	G	C	5586.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:315,286:0.48:601
chr20	61512606	rs910148	T	C	15428.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:2,599:1.00:601
chr20	61513649	rs6011441	G	T	5793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.046;QD=10.33;ReadPosRankSum=0.111;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:267,294:0.52:561
chr20	61524133	rs2294998	C	T	6008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=764;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.906;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:434,319:0.42:753
chr20	61524384	rs11362069	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-1.003;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr20	61577275	rs2427452	T	C	16853.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr20	61588159	rs2245341	A	G	2772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=1.422;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:151,144:0.49:295
chr20	61588745	rs2427457	C	T	5492.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:327,283:0.46:610
chr20	61594493	rs3729555	G	A	5206.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:270,262:0.49:532
chr20	61594679	rs2427463	A	G	22564.77	.	AC=2;AF=1.00;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	1/1:0,859:1.00:859
chr20	61595537	rs2427464	A	G	5926.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.656;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=3.421;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=0.662;SOR=0.535;set=HC	GT:AD:AF:DP	1/1:1,232:1.00:233
chr20	61597946	rs5842409	CT	C	25251.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.252;QD=37.03;ReadPosRankSum=2.252;SOR=0.107;set=HC	GT:AD:AF:DP	1/1:2,680:1.00:682
chr20	61598899	rs3746750	A	G	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=-1.001;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:65,66:0.50:131
chr20	61640934	rs11281878	A	AGCGGCTCCGC	107.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr20	61711430	rs112147947	T	C	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-1.487;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:117,91:0.44:208
chr20	61711484	rs62206577	T	C	2619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.342;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-0.158;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:204,142:0.41:346
chr20	61711616	rs62206578	A	C	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:65,76:0.54:141
chr20	61711642	rs112169283	CT	C	1399.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr20	61711648	rs76011895	C	T	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr20	61847068	rs6090310	C	G	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr20	61869223	rs6062855	T	C	8581.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr20	61869607	rs6010878	C	A	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr20	61869826	rs2273487	C	T	10234.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr20	61870075	rs744590	C	T	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	61870167	rs744591	C	A	21912.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.736;ClippingRankSum=0.000;DB;DP=850;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.93;ReadPosRankSum=0.248;SOR=0.143;set=HC	GT:AD:AF:DP	1/1:2,843:1.00:845
chr20	61870220	rs744592	T	C	35141.77	.	AC=2;AF=1.00;AN=2;DB;DP=1375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,1368:1.00:1368
chr20	61870465	rs1075557	A	G	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr20	61870605	rs3215649	T	TG	9029.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=33.20;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr20	61870634	rs1075556	A	G	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr20	61872905	rs1047826	A	G	9726.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr20	61873039	rs1047822	T	C	9850.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr20	61873080	rs1047819	T	A	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	61875497	rs2236186	A	C	7061.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:12,285:0.96:297
chr20	61878632	rs2236193	G	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	61878649	rs4809512	T	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	61878950	rs872808	A	C	14181.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,537:1.00:537
chr20	61880169	rs1129659	T	G	21983.77	.	AC=2;AF=1.00;AN=2;DB;DP=840;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,835:1.00:835
chr20	61880274	rs2273497	A	G	9866.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr20	61881296	rs927081	A	G	13534.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.674;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=0.813;SOR=0.151;set=HC	GT:AD:AF:DP	1/1:2,555:1.00:557
chr20	61885459	rs34830843	G	T	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:111,93:0.46:204
chr20	61907075	rs6011712	T	C	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr20	61912715	rs2236195	T	C	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:130,99:0.43:229
chr20	61916286	rs73153583	C	A	6414.77	.	AC=1;AF=0.500;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	0/1:355,324:0.48:679
chr20	61916379	rs13042357	C	T	3550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.123;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:254,191:0.43:445
chr20	61917241	rs6090342	A	G	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	61918164	rs6062431	C	G	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:168,134:0.44:302
chr20	61941747	rs4809287	A	G	13939.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr20	61943089	rs6089877	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr20	61943113	rs34976669	A	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr20	61943916	rs3833299	GC	G	2891.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:93,101:0.52:194
chr20	61946692	rs6090357	C	T	10577.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,415:1.00:415
chr20	61950397	rs41302946	C	T	19501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=2060;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-2.772;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:1020,1006:0.50:2026
chr20	61950792	rs3746381	C	T	5926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=4.103;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:322,305:0.49:627
chr20	61951326	rs11478836	CT	C	5126.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr20	61951489	rs6089881	G	C	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	61951789	rs6062891	C	T	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	61952490	rs4809533	A	G	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:2,250:0.99:252
chr20	61953365	rs1884821	T	C	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr20	61956782	rs2314251	T	C	15051.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.88;ReadPosRankSum=-0.111;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:4,601:0.99:605
chr20	61959642	rs2273494	G	A	13294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.015;ClippingRankSum=0.000;DB;DP=1494;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=-0.508;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:762,698:0.48:1460
chr20	61960762	rs5842416	CTG	C	3746.73	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:96,105:0.52:201
chr20	61981536	rs2229960	A	G	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:146,98:0.40:244
chr20	61982085	rs1044394	A	G	8104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DB;DP=896;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.550;QD=9.24;ReadPosRankSum=-0.247;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:455,422:0.48:877
chr20	61986863	rs45473291	C	G	5508.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:298,286:0.49:584
chr20	61986949	rs2273500	T	C	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:119,114:0.49:233
chr20	61987822	rs2273502	C	T	3854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=0.097;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:187,195:0.51:382
chr20	61990874	rs6090384	T	C	15419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=770;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=0.541;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:369,397:0.52:766
chr20	61990878	rs2273505	C	T	15497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=784;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.89;ReadPosRankSum=0.860;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:379,400:0.51:779
chr20	61990939	rs2273506	G	A	7769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.500;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-0.293;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:378,389:0.51:767
chr20	62005458	rs35318934	G	C	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr20	62038277	rs1801475	T	G	9433.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr20	62038810	rs3746363	G	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	62040022	rs2236197	T	C	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr20	62046278	rs1801545	G	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	62046496	rs112006486	C	CGACAGACA,CAACAGACA	13453.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.180;QD=30.37;ReadPosRankSum=-0.870;SOR=0.952;set=HC	GT:AD:AF:DP	1/2:2,221,220:0.50,0.50:443
chr20	62046549	rs75305929	C	T	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	62119559	rs2750403	C	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.16;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	62119588	rs71799118	GC	G	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=43.38;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	62119594	rs71792296	GC	G	1191.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=49.66;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	62119615	rs2750402	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=35.57;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	62121702	rs310607	A	G	17952.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=44.44;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr20	62121726	rs310608	T	C	23023.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=37.93;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,607:1.00:607
chr20	62124459	rs12480745	G	T	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	62127121	rs310618	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr20	62127521	rs310619	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr20	62163812	rs13041839	G	T	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	62172219	rs6122130	G	A	8467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-2.062;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:347,419:0.55:766
chr20	62172244	rs33933649	C	G	8331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=989;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=0.701;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:541,440:0.45:981
chr20	62173029	rs310656	A	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	62173562	rs56130722	G	T	5711.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:408,300:0.42:708
chr20	62174724	rs4809309	G	A	4512.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:172,221:0.56:393
chr20	62187187	rs3746348	T	C	10441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=1016;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.288;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:492,513:0.51:1005
chr20	62187439	rs734750	T	C	17833.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.552;ClippingRankSum=0.000;DB;DP=705;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=0.966;SOR=0.447;set=HC	GT:AD:AF:DP	1/1:1,689:1.00:690
chr20	62190751	.	CAGTCAGGGTCAGGTGGGAGG	C	199.74	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.95;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	62190790	.	G	GT	257	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=4;MGOF=28;MMLQ=27;MQ=52.44;NF=0;NR=6;PP=257;QD=48.0;SC=TCAGGTGGGAGGAGTCAGGGT;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=6;WE=62190799;WS=62190780;set=Platypus	GT:AD:AF:DP	1/1:4,6:0.60:10
chr20	62190791	.	G	C	145	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=1;HapScore=4;MGOF=28;MMLQ=27;MQ=50.0;NF=0;NR=6;PP=145;QD=29.9618687579;SC=CAGGTGGGAGGAGTCAGGGTC;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=6;WE=62190799;WS=62190780;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	62191321	rs3810477	A	G	9938.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr20	62191475	rs3810478	T	G	11911.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr20	62191558	rs3810479	G	A	3759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.406;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.029;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:164,180:0.52:344
chr20	62191759	.	A	G	972	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=22;NF=47;NR=30;PP=972;QD=13.0749508123;SC=CTGACTCACAAGCACCAGACA;SbPval=0.4;Source=Platypus;TC=205;TCF=131;TCR=74;TR=77;WE=62191767;WS=62191749;set=Platypus	GT:AD:AF:DP	0/1:128,77:0.38:205
chr20	62191759	.	A	AGCACCAGACACTCACCACCTCAGCCACCTCCTCCAGAAAGCCCTCCCTGACTCACAG	2414.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=1207.37;ReadPosRankSum=-0.674;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,1:0.50:2
chr20	62191937	rs11551685	G	A	10106.77	.	AC=1;AF=0.500;AN=2;DB;DP=1054;set=Intersection	GT:AD:AF:DP	0/1:514,517:0.50:1031
chr20	62192374	rs3810480	C	T	2724.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:108,128:0.54:236
chr20	62193414	rs310629	A	G	14479.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr20	62193587	rs3810482	T	C	5879.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr20	62194030	rs3810483	G	C	12013.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr20	62194103	rs3810484	A	G	13606.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr20	62194128	rs3810485	G	A	15697.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr20	62194713	rs3810486	A	C	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:115,115:0.50:230
chr20	62195220	rs3827022	C	T	4099.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:274,233:0.46:507
chr20	62195672	rs3827023	C	T	5761.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:306,291:0.49:597
chr20	62196020	rs45602035	C	T	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:154,154:0.50:308
chr20	62196033	rs3810487	C	T	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:158,178:0.53:336
chr20	62196182	rs3810488	G	C	6513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=1.390;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:298,332:0.53:630
chr20	62196807	rs310632	T	C	24225.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,920:1.00:920
chr20	62196884	rs310633	A	G	17656.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr20	62197905	rs310634	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.785;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr20	62198163	rs142958047	C	T	4196.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:185,193:0.51:378
chr20	62198236	rs415304	G	A	10767.77	.	AC=1;AF=0.500;AN=2;DB;DP=1088;set=Intersection	GT:AD:AF:DP	0/1:529,549:0.51:1078
chr20	62198348	rs438363	C	T	29239.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.621;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.51;ReadPosRankSum=1.242;SOR=0.505;set=HC	GT:AD:AF:DP	1/1:1,1102:1.00:1103
chr20	62198662	rs367440	A	G	9828.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr20	62199100	rs422888	G	A	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:119,119:0.50:238
chr20	62199126	rs3810491	C	G	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:91,93:0.51:184
chr20	62200471	rs6089923	C	G	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:118,94:0.44:212
chr20	62200575	rs1741594	T	C	9236.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.86;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr20	62200576	rs6090457	G	A	2505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-1.121;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:144,124:0.46:268
chr20	62200860	rs1757752	A	G	21453.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=840;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=-2.250;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:2,828:1.00:830
chr20	62202240	rs402211	A	G	4404.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr20	62202301	rs3746346	A	G	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr20	62203748	rs34681475	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr20	62221364	rs2297427	G	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr20	62221610	rs311496	T	C	10299.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr20	62221766	rs2297428	C	T	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:203,208:0.51:411
chr20	62222211	rs1291170	T	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr20	62223371	rs311494	A	G	8704.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr20	62224083	rs2236502	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr20	62224595	rs2236503	G	A	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:79,46:0.37:125
chr20	62227081	rs311489	A	G	12202.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr20	62227180	rs2282157	C	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:70,83:0.54:153
chr20	62229244	rs2297430	T	C	5757.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:261,282:0.52:543
chr20	62229337	rs414897	G	A	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr20	62234240	rs4809312	C	T	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=0.236;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:26,43:0.62:69
chr20	62234240	.	CA	TG	399	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=27;MQ=60.0;NF=20;NR=6;PP=399;QD=17.4026105716;SC=AGGATGCACTCAGCACAGCTG;SbPval=0.29;Source=Platypus;TC=53;TCF=44;TCR=9;TR=26;WE=62234249;WS=62234230;set=Platypus	GT:AD:AF:DP	0/1:27,26:0.49:53
chr20	62234241	rs2145262	A	G	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.08;SOR=2.439;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	62234273	rs766915	A	G	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr20	62236148	rs6090471	T	C	9926.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr20	62272658	rs2150910	T	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr20	62275844	rs6010986	T	C	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:80,74:0.48:154
chr20	62291008	rs6089953	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr20	62298673	rs7261546	C	G	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,54:0.49:111
chr20	62305274	rs2297437	G	A	5741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=-0.301;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:243,292:0.55:535
chr20	62309554	rs41309367	C	T	4498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=0.340;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:268,231:0.46:499
chr20	62312299	rs2297440	T	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr20	62319464	rs2738785	T	C	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:198,182:0.48:380
chr20	62319604	rs2777941	A	C	8695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=876;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=4.080;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:437,436:0.50:873
chr20	62320242	rs6062492	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr20	62320968	rs6062302	T	C	6666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-0.476;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:381,352:0.48:733
chr20	62321655	rs2236506	G	A	7335.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:330,360:0.52:690
chr20	62322288	rs3208007	T	C	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:60,77:0.56:137
chr20	62323006	rs2236507	G	C	3031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=0.485;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:280,172:0.38:452
chr20	62324289	rs3848672	C	T	7218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.416;QD=10.14;ReadPosRankSum=0.772;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:350,362:0.51:712
chr20	62326110	rs3208008	A	C	3459.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:202,172:0.46:374
chr20	62326579	rs41309931	G	T	10647.77	.	AC=1;AF=0.500;AN=2;DB;DP=1044;set=Intersection	GT:AD:AF:DP	0/1:469,526:0.53:995
chr20	62327199	rs1056990	A	G	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr20	62328267	rs2257440	C	T	7912.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:395,399:0.50:794
chr20	62328375	rs2738787	A	G	22627.77	.	AC=2;AF=1.00;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	1/1:0,866:1.00:866
chr20	62328453	rs2258056	T	C	4470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.722;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:210,225:0.52:435
chr20	62328742	rs909341	C	T	6072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=-1.392;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:433,326:0.43:759
chr20	62328829	rs1291205	C	G	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:318,214:0.40:532
chr20	62331989	rs1048665	T	G	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:203,150:0.42:353
chr20	62332436	rs2738788	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	62332537	rs6122147	C	T	4753.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:327,254:0.44:581
chr20	62332638	rs374497353	A	AC	6971.73	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:294,243:0.45:537
chr20	62332641	rs2257818	T	C	6066.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:251,301:0.55:552
chr20	62333115	rs2236508	G	A	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.909;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr20	62333350	rs59166240	GCCCC	G	1894.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=8.308;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.373;QD=35.08;ReadPosRankSum=1.900;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:4,50:0.93:54
chr20	62337622	rs1291211	A	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	62340115	rs1291212	C	G	6820.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	62364885	rs6011068	T	A	20916.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,803:1.00:803
chr20	62366478	rs2427534	A	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr20	62367377	rs2427535	A	G	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	62368804	rs2236510	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr20	62369114	.	A	G	633.77	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr20	62369161	rs2236511	C	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr20	62369300	rs914559	C	G	5639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=8.07;ReadPosRankSum=-1.913;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:399,300:0.43:699
chr20	62369426	rs150938918	C	CGGGGCG	11067.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=779;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=16.79;ReadPosRankSum=3.158;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:368,291:0.44:659
chr20	62369895	rs1151624	A	G	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:192,164:0.46:356
chr20	62370349	rs1056441	T	C	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:97,111:0.53:208
chr20	62372706	rs4809221	G	A	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=-1.032;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:56,61:0.52:117
chr20	62372813	rs2427536	G	A	11069.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr20	62372956	rs2253823	C	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr20	62373707	rs8957	G	T	8048.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr20	62374219	rs1151626	A	C	17773.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:0,677:1.00:677
chr20	62374389	rs1058319	C	T	3687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=3.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=3.097;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:159,183:0.54:342
chr20	62374441	rs6742	T	C	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	62378349	rs5019252	C	T	7694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=2.163;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:326,381:0.54:707
chr20	62378364	rs12625387	C	T	7487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=1.731;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=5.260;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:379,389:0.51:768
chr20	62378418	rs74552928	C	T	6641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=743;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=2.675;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:387,349:0.47:736
chr20	62378711	.	GGGTGAGCAGGGCCTGGTGGAGGTGGGGGGGGCAGGT	G	936.73	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr20	62407176	rs35738769	G	A	2734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.140;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:143,136:0.49:279
chr20	62488889	rs368004706	CT	C	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.603;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:36,36:0.50:72
chr20	62504840	.	C	CA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.515;QD=3.65;ReadPosRankSum=-0.343;SOR=1.757;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr20	62507947	rs76235411	T	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr20	62559964	rs817362	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr20	62571417	.	AGG	A,AG	3207.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=6.989;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQRankSum=1.415;QD=15.20;ReadPosRankSum=2.334;SOR=0.328;set=HC	GT:AD:AF:DP	1/2:43,72,96:0.34,0.45:211
chr20	62578077	rs111264888	A	AT	2226.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	62591460	rs45570933	G	A	4065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.605;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:206,206:0.50:412
chr20	62595169	rs817325	A	G	22103.77	.	AC=2;AF=1.00;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr20	62597455	.	T	C	1654	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=0.9990;HP=1;HapScore=1;MGOF=9;MMLQ=27;MQ=57.08;NF=22;NR=10;PP=1654;QD=52.7741003921;SC=TACCTTTTCTTACCACTGTTC;SbPval=0.55;Source=Platypus;TC=32;TCF=22;TCR=10;TR=32;WE=62597479;WS=62597445;set=Platypus	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	62597463	.	TTCC	T	1063	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=27;MQ=58.17;NF=12;NR=11;PP=1063;QD=47.652173913;SC=CTTACCACTGTTCCTCCCCGA;SbPval=0.63;Source=Platypus;TC=28;TCF=14;TCR=14;TR=23;WE=62597479;WS=62597445;set=Platypus	GT:AD:AF:DP	1/0:5,23:0.82:28
chr20	62597471	rs201208894	C	T	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	62597694	rs817329	T	G	21434.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	1/1:0,792:1.00:792
chr20	62599357	rs56015416	C	T	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	62610556	rs116165844	G	T	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:43,63:0.59:106
chr20	62612574	rs45558633	C	T	9031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=931;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=-0.339;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:467,463:0.50:930
chr20	62648292	.	C	CT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-1.538;QD=2.07;ReadPosRankSum=-0.109;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr20	62670427	rs76145129	G	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr20	62697751	rs4809251	T	C	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	62714783	rs6010717	C	G	11775.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr20	62715089	rs4337532	G	A	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-0.484;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:107,112:0.51:219
chr20	62715548	rs4431000	C	A	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.662;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:40,44:0.52:84
chr20	62724253	rs55872076	C	T	6302.77	.	AC=1;AF=0.500;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	0/1:354,318:0.47:672
chr20	62724438	rs6010719	C	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr20	62729431	rs2229205	C	T	9933.77	.	AC=1;AF=0.500;AN=2;DB;DP=990;set=Intersection	GT:AD:AF:DP	0/1:477,491:0.51:968
chr20	62729577	rs2295448	C	T	6917.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:346,346:0.50:692
chr20	62737043	.	G	A	590.77	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.14;QD=42.20;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	62737055	.	A	G	770.77	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.52;QD=48.17;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	62737063	.	G	C	961.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.31;QD=48.09;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	62737067	.	G	A	916.77	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.20;QD=48.25;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr20	62737070	.	G	A	842.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.31;QD=42.14;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	62737077	rs368469662	TG	T	833.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=12.788;MLEAC=2;MLEAF=1.000;MQ=57.20;MQRankSum=-0.171;QD=43.88;ReadPosRankSum=1.746;SOR=5.890;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr20	62737318	rs13036542	G	A	3631.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:227,193:0.46:420
chr20	62737537	rs4809400	C	A	5239.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:338,276:0.45:614
chr20	62737568	rs4809401	T	C	5795.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:368,310:0.46:678
chr20	62744682	rs75030380	G	A	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:151,111:0.42:262
chr20	62830290	rs2295450	C	A	4731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=2.747;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:230,260:0.53:490
chr20	62836271	rs75307077	A	G	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr20	62836382	rs2273443	C	T	4077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-1.354;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:269,220:0.45:489
chr20	62837029	.	C	T	6559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DP=642;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=0.108;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:302,331:0.52:633
chr20	62838866	rs76118085	G	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr20	62838933	rs6090069	T	C	4319.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:198,207:0.51:405
chr20	62839888	rs59834539	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr20	62843304	rs76419146	G	C	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:70,53:0.43:123
chr20	62843562	.	TGGTGGGGGCC	T	3934.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.736;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=63.22;MQRankSum=-13.846;QD=15.43;ReadPosRankSum=4.563;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:100,155:0.61:255
chr20	62843573	.	AGGGTGGGGGCCGTG	A	4021.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=2.625;MLEAC=1;MLEAF=0.500;MQ=62.32;MQRankSum=-12.714;QD=18.53;ReadPosRankSum=6.096;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:62,155:0.71:217
chr20	62850358	rs41279348	C	T	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:113,95:0.46:208
chr20	62851020	rs6122274	T	C	2502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.738;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-1.177;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:118,125:0.51:243
chr20	62858693	rs2273446	C	G	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:138,142:0.51:280
chr20	62858996	rs17569186	G	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr20	62896665	rs17878941	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr20	62903535	rs11906201	T	C	2904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.418;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=10.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-1.792;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:182,156:0.46:338
chr20	62903550	rs11905831	A	G	3624.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:210,192:0.48:402
chr20	62903729	rs11907696	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr20	62904542	rs6062361	A	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr20	62905090	rs148085913	T	TTTC	205.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr20	62959184	rs200444735	T	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.182;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.487;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-8.456;QD=0.93;ReadPosRankSum=-3.456;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:180,32:0.15:212
chr20	62959363	rs111569474	G	C	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr21	9825735	rs371225382	T	C	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.26;QD=25.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	9825838	.	T	TGCG	6526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-12.699;ClippingRankSum=0.000;DP=934;ExcessHet=3.0103;FS=17.446;MLEAC=1;MLEAF=0.500;MQ=49.51;MQRankSum=-12.336;QD=7.02;ReadPosRankSum=5.497;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:552,378:0.41:930
chr21	9825966	.	A	C	10946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;ClippingRankSum=0.000;DP=7094;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=46.56;MQRankSum=-14.823;QD=1.55;ReadPosRankSum=-0.280;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:5750,1307:0.19:7057
chr21	9825975	.	C	T	11389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.110;ClippingRankSum=0.000;DP=7025;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=46.42;MQRankSum=-11.535;QD=1.63;ReadPosRankSum=-1.673;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:5665,1312:0.19:6977
chr21	9826293	.	C	T	13622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DP=4683;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=45.71;MQRankSum=-6.958;QD=2.92;ReadPosRankSum=0.077;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:3587,1073:0.23:4660
chr21	9826301	rs374753985	T	C	122649.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=4004;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.53;MQRankSum=1.513;QD=30.89;ReadPosRankSum=-0.127;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:12,3959:1.00:3971
chr21	9907198	.	C	T	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=46.22;MQRankSum=-4.107;QD=9.74;ReadPosRankSum=1.960;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:88,35:0.28:123
chr21	9907222	.	T	C	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=50.48;MQRankSum=-6.027;QD=6.67;ReadPosRankSum=1.050;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:165,59:0.26:224
chr21	9907271	.	A	G	3311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DP=540;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=54.28;MQRankSum=-9.743;QD=6.16;ReadPosRankSum=-2.445;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:346,192:0.36:538
chr21	9907345	.	C	T	6284.77	.	AC=1;AF=0.500;AN=2;DP=932;set=Intersection	GT:AD:AF:DP	0/1:582,350:0.38:932
chr21	9907375	rs146622385	T	C	10192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.138;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-11.886;QD=13.91;ReadPosRankSum=-0.028;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:449,284:0.39:733
chr21	9907384	rs140139768	G	A	10035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=54.87;MQRankSum=-10.789;QD=14.63;ReadPosRankSum=0.072;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:417,269:0.39:686
chr21	9907397	rs150294462	C	T	9354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.71;MQRankSum=-8.578;QD=14.97;ReadPosRankSum=0.174;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:377,248:0.40:625
chr21	9907416	.	C	T	7139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.97;MQRankSum=-5.701;QD=14.84;ReadPosRankSum=0.909;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:291,190:0.40:481
chr21	9907503	.	C	A	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.071;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.93;MQRankSum=1.509;QD=7.86;ReadPosRankSum=-1.631;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:38,20:0.34:58
chr21	9907592	.	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=43.35;MQRankSum=-1.863;QD=3.74;ReadPosRankSum=-0.837;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr21	10793860	.	T	TGG	6522.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;MQRankSum=-2.897;QD=45.30;ReadPosRankSum=-0.645;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:4,140:0.97:144
chr21	10793861	.	A	AATGGAATGGAATGGAGTG	13446.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.99;QD=48.54;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr21	10793891	rs28490105	T	G	19513.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=39.18;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,498:1.00:498
chr21	10793925	rs28641787	T	A	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=-1.120;QD=3.18;ReadPosRankSum=0.328;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:403,132:0.25:535
chr21	10793961	.	T	TGAATGGAATGGACTC	9921.73	.	AC=2;AF=1.00;AN=2;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.50;QD=44.10;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:1,224:1.00:225
chr21	10794047	rs28970391	G	A	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=49.02;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	10794051	rs200584440	T	C	1097.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.446;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.402;QD=35.41;ReadPosRankSum=1.066;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,28:0.90:31
chr21	10794052	rs74672900	G	A	1097.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.064;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.402;QD=35.41;ReadPosRankSum=1.135;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,28:0.90:31
chr21	10862599	rs3883945	C	T	22407.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr21	10862618	rs3916251	T	C	24402.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr21	10862846	rs3916645	A	T	31823.77	.	AC=2;AF=1.00;AN=2;DB;DP=814;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.09;QD=39.58;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,804:1.00:804
chr21	10862846	.	ATCACCAG	TTCACCAA,TTCACCAG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.66;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=27;MMLQ=26;MQ=54.61;NF=164,257;NR=143,208;PP=2944,1568;QD=20;SC=TGGATACACCATCACCAGCTA;SbPval=0.45;Source=Platypus;TC=465;TCF=257;TCR=208;TR=307,465;WE=10862861;WS=10862836;set=Platypus	GT:AF:DP	0/1:0.66:465
chr21	10862853	rs1961808	G	A	12942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=837;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-1.249;QD=15.59;ReadPosRankSum=-1.090;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:239,591:0.71:830
chr21	10862874	rs1807747	A	G	24233.77	.	AC=2;AF=1.00;AN=2;DB;DP=940;set=Intersection	GT:AD:AF:DP	1/1:2,935:1.00:937
chr21	10862947	rs3883944	G	A	31780.77	.	AC=2;AF=1.00;AN=2;DB;DP=1205;set=Intersection	GT:AD:AF:DP	1/1:0,1195:1.00:1195
chr21	10863087	rs28521368	T	G	19637.77	.	AC=2;AF=1.00;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	1/1:0,752:1.00:752
chr21	10910291	rs150480	C	T	2125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.963;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-6.306;QD=3.45;ReadPosRankSum=1.538;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:479,138:0.22:617
chr21	10910311	rs9996	T	G	5121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.316;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-6.889;QD=6.77;ReadPosRankSum=-0.386;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:568,188:0.25:756
chr21	10910347	rs150482	A	G	13195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=869;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-3.569;QD=15.27;ReadPosRankSum=-0.476;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:241,623:0.72:864
chr21	10916293	rs150483	A	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:137,39:0.22:176
chr21	10920098	rs212146	T	C	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.80;QD=25.82;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr21	10935116	rs625018	T	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr21	10944828	rs146327494	CAAG	C	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=1.105;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr21	10959881	rs212112	G	A	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:67,36:0.35:103
chr21	10969894	.	A	AATGG	982.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.000;QD=5.46;ReadPosRankSum=3.996;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:141,39:0.22:180
chr21	10971892	rs10433039	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.480;QD=1.61;ReadPosRankSum=-1.011;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr21	10973787	rs469953	T	A	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:309,110:0.26:419
chr21	10973798	rs469961	T	C	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:264,92:0.26:356
chr21	10998165	rs364232	C	A	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr21	11027085	rs6421268	A	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:96,34:0.26:130
chr21	11027129	rs4577378	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr21	11038722	rs62209718	C	A	4142.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:98,190:0.66:288
chr21	11038796	rs71227100	T	C	2570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.746;ClippingRankSum=0.000;DB;DP=875;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-16.341;QD=2.94;ReadPosRankSum=1.321;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:671,203:0.23:874
chr21	11038802	rs56253511	G	A	2559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.342;ClippingRankSum=0.000;DB;DP=876;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=-2.923;QD=2.93;ReadPosRankSum=0.886;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:679,196:0.22:875
chr21	11038843	rs10433076	G	C	8140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;ClippingRankSum=0.000;DB;DP=825;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-17.783;QD=9.92;ReadPosRankSum=4.040;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:413,408:0.50:821
chr21	11038868	rs67736403	C	T	6767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.753;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=53.56;MQRankSum=-20.102;QD=8.84;ReadPosRankSum=-3.493;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:419,347:0.45:766
chr21	11039079	rs3888469	C	A	1882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=1388;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=-2.235;QD=1.36;ReadPosRankSum=1.878;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:1152,236:0.17:1388
chr21	11039142	rs2537265	T	A	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=1005;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.547;QD=0.67;ReadPosRankSum=-2.890;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:912,87:0.09:999
chr21	11039152	rs2740231	A	C	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=961;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.796;QD=0.86;ReadPosRankSum=-3.895;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:861,90:0.09:951
chr21	11049343	.	C	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-3.706;QD=2.87;ReadPosRankSum=1.029;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:115,29:0.20:144
chr21	11049364	rs468502	C	T	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=1.561;QD=4.84;ReadPosRankSum=0.606;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:156,58:0.27:214
chr21	11049395	rs467462	T	C	9686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-1.481;QD=31.86;ReadPosRankSum=-0.038;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:38,266:0.88:304
chr21	11049395	.	TAATAGGGTC	CAATAGGGTC,CAATAGGGTG	2913	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.63;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=27;MQ=46.31;NF=161,110;NR=65,47;PP=1439,2913;QD=6.52111155994;SC=TAGCGCCTAGTAATAGGGTCC;SbPval=0.54;Source=Platypus;TC=251;TCF=178;TCR=73;TR=226,157;WE=11049412;WS=11049385;set=Platypus	GT:AF:DP	0/1:0.90:251
chr21	11049404	rs2259244	C	G	4214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.432;MLEAC=1;MLEAF=0.500;MQ=55.71;MQRankSum=-1.955;QD=13.64;ReadPosRankSum=-0.952;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:120,189:0.61:309
chr21	11049503	rs7280925	T	A	2932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.746;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=46.52;MQRankSum=-2.961;QD=13.77;ReadPosRankSum=0.493;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:97,116:0.54:213
chr21	11049516	rs468629	G	A	7732.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.50;QD=30.32;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr21	11058119	rs2261873	C	T	1582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=3.778;MLEAC=1;MLEAF=0.500;MQ=51.56;MQRankSum=-9.461;QD=13.53;ReadPosRankSum=-0.464;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:47,70:0.60:117
chr21	11058226	rs4913558	G	C	10863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.014;ClippingRankSum=0.000;DB;DP=897;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=54.54;MQRankSum=1.471;QD=12.14;ReadPosRankSum=3.231;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:364,531:0.59:895
chr21	11058227	rs2775343	T	A	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.636;ClippingRankSum=0.000;DB;DP=912;ExcessHet=3.0103;FS=8.081;MLEAC=1;MLEAF=0.500;MQ=54.47;MQRankSum=-15.645;QD=2.08;ReadPosRankSum=-11.110;SOR=1.785;set=HC	GT:AD:AF:DP	0/1:813,95:0.10:908
chr21	11058229	rs55883018	T	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.755;ClippingRankSum=0.000;DB;DP=954;ExcessHet=3.0103;FS=11.496;MLEAC=1;MLEAF=0.500;MQ=54.16;MQRankSum=-17.712;QD=0.37;ReadPosRankSum=-13.374;SOR=1.777;set=HC	GT:AD:AF:DP	0/1:837,112:0.12:949
chr21	11058349	rs209032	T	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.610;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=49.33;MQRankSum=6.810;QD=0.16;ReadPosRankSum=-1.338;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:582,80:0.12:662
chr21	11058404	rs58094605	A	ACT	2252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.070;MLEAC=1;MLEAF=0.500;MQ=50.63;MQRankSum=-4.460;QD=30.04;ReadPosRankSum=2.635;SOR=2.064;set=HC	GT:AD:AF:DP	0/1:15,60:0.80:75
chr21	11059734	rs75838613	C	T	897.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.649;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=55.13;MQRankSum=0.035;QD=7.01;ReadPosRankSum=-0.733;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:79,49:0.38:128
chr21	11059735	rs2775349	T	C	5147.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.16;MQRankSum=-1.163;QD=39.60;ReadPosRankSum=-0.804;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:2,128:0.98:130
chr21	11059736	rs7279429	G	A	923.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.09;MQRankSum=-4.362;QD=7.22;ReadPosRankSum=0.448;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:90,38:0.30:128
chr21	11059744	rs57566895	A	G	3062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=55.26;MQRankSum=-5.976;QD=23.20;ReadPosRankSum=0.822;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:46,86:0.65:132
chr21	11059799	rs74827812	C	T	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.125;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-5.071;QD=3.63;ReadPosRankSum=-0.865;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:124,45:0.27:169
chr21	11059841	rs77547988	C	T	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:160,62:0.28:222
chr21	11059845	rs7364036	C	T	2224.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:130,102:0.44:232
chr21	11059853	rs75278999	C	T	2280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-2.855;QD=9.23;ReadPosRankSum=-0.327;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:177,70:0.28:247
chr21	11059853	.	CA	TG	1770	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=37;MMLQ=17;MQ=58.38;NF=16;NR=17;PP=1770;QD=55.2566022686;SC=GACGTGGTGGCAGGCACCTGT;SbPval=0.56;Source=Platypus;TC=121;TCF=58;TCR=63;TR=33;WE=11059862;WS=11059831;set=Platypus	GT:AD:AF:DP	0/1:88,33:0.27:121
chr21	11059854	rs75079963	A	G	2867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-2.602;QD=11.47;ReadPosRankSum=-0.413;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:160,90:0.36:250
chr21	11059877	rs7364059	T	C	4944.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:84,194:0.70:278
chr21	11059951	rs75112368	T	C	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-0.910;QD=4.64;ReadPosRankSum=-0.368;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:104,46:0.31:150
chr21	11060013	rs2838200	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr21	11060025	.	AG	A	363	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=1;HapScore=4;MGOF=13;MMLQ=27;MQ=59.69;NF=0;NR=4;PP=363;QD=99.0;SC=TTAGAAACACAGAAAAAATAT;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=4;WE=11060033;WS=11060003;set=Platypus	GT:AD:AF:DP	1/0:7,4:0.36:11
chr21	11098626	rs1967649	G	A	3321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.738;ClippingRankSum=0.000;DB;DP=893;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.236;QD=3.75;ReadPosRankSum=0.290;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:655,230:0.26:885
chr21	11098664	rs75742769	A	G	4632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.563;ClippingRankSum=0.000;DB;DP=1757;ExcessHet=3.0103;FS=9.240;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-9.850;QD=2.66;ReadPosRankSum=-9.057;SOR=1.801;set=HC	GT:AD:AF:DP	0/1:1532,210:0.12:1742
chr21	11098673	.	GTACTCCTAC	G	5060.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=16.476;ClippingRankSum=0.000;DP=2169;ExcessHet=3.0103;FS=16.753;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-10.375;QD=2.35;ReadPosRankSum=-6.593;SOR=2.289;set=HC	GT:AD:AF:DP	0/1:1900,251:0.12:2151
chr21	11098674	rs1752238	T	C	44524.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-16.399;ClippingRankSum=0.000;DB;DP=2025;ExcessHet=3.0103;FS=15.517;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=10.399;QD=22.21;ReadPosRankSum=5.815;SOR=0.108;set=HC	GT:AD:AF:DP	0/1:254,1751:0.87:2005
chr21	11098685	.	CTCCAGCCGCCA	C	9320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.834;ClippingRankSum=0.000;DP=2366;ExcessHet=3.0103;FS=16.882;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-11.601;QD=3.97;ReadPosRankSum=-6.501;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:2081,265:0.11:2346
chr21	11098704	rs74415742	A	G	11363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=2521;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-11.079;QD=4.55;ReadPosRankSum=-11.120;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:2090,407:0.16:2497
chr21	11098723	rs73151874	T	C	14884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=2749;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-10.559;QD=5.46;ReadPosRankSum=-0.409;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:2213,513:0.19:2726
chr21	11098728	rs113315187	C	T	15220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DB;DP=2777;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-10.364;QD=5.52;ReadPosRankSum=1.977;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:2221,534:0.19:2755
chr21	11098827	rs79274499	C	T	4265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=5.917;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-4.726;QD=5.58;ReadPosRankSum=-0.159;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:519,245:0.32:764
chr21	11098863	rs75318310	A	G	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:182,83:0.31:265
chr21	14756428	.	T	TAC	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=0.000;QD=3.31;ReadPosRankSum=0.459;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr21	14756438	rs3126400	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=0.000;QD=11.57;ReadPosRankSum=0.081;SOR=1.449;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr21	14756479	.	GTA	G	43.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.246;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr21	14756481	rs12627112	A	G	428.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=0.000;QD=10.99;ReadPosRankSum=0.823;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr21	14756483	rs12627113	A	G	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=0.000;QD=24.39;ReadPosRankSum=1.686;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:10,33:0.77:43
chr21	14756794	rs2792526	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.55;MQRankSum=-3.328;QD=0.75;ReadPosRankSum=1.781;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:294,50:0.15:344
chr21	14756895	rs137932371	T	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=48.78;MQRankSum=-1.776;QD=1.47;ReadPosRankSum=0.177;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:263,57:0.18:320
chr21	14756973	rs2821831	T	A	5852.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:62,253:0.80:315
chr21	14757043	rs2257596	T	C	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=2.701;QD=2.70;ReadPosRankSum=-0.862;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:395,110:0.22:505
chr21	14757095	rs148845140	G	GT	9731.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=47.12;MQRankSum=-3.974;QD=17.07;ReadPosRankSum=-0.846;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:127,443:0.78:570
chr21	14757565	rs2821832	C	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr21	14758516	rs2821833	T	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr21	14760151	rs2775777	T	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	14760203	rs2775779	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.46;MQRankSum=-0.496;QD=2.24;ReadPosRankSum=-0.397;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:106,28:0.21:134
chr21	14766093	rs2775805	G	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	14771323	.	TTC	T	621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-0.825;QD=4.71;ReadPosRankSum=-0.342;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:108,24:0.18:132
chr21	14771327	rs143695938	TC	T,TGCC	4509.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.74;QD=34.96;SOR=0.840;set=HC	GT:AD:AF:DP	1/2:0,105,24:0.81,0.19:129
chr21	14778811	rs112146711	C	T	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.36;QD=24.60;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	14917181	rs62215474	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=49.22;MQRankSum=-7.211;QD=0.32;ReadPosRankSum=0.737;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:623,94:0.13:717
chr21	15373420	rs1297087	C	A	21792.77	.	AC=2;AF=1.00;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	1/1:0,839:1.00:839
chr21	15516898	rs2822431	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	15516948	rs2822432	C	T	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr21	15516976	rs7283442	T	A	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr21	15554030	rs2822438	T	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:9,88:0.91:97
chr21	15593286	rs430245	A	G	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.34;ReadPosRankSum=-1.083;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr21	15593495	rs378280	T	G	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:28,133:0.83:161
chr21	15596683	rs379724	G	A	851.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.475;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.981;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.84;ReadPosRankSum=-0.480;SOR=0.171;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr21	15596772	rs409782	T	G	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr21	15596882	rs410052	T	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	15596932	rs188176310	A	T	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	15599354	.	G	A	2416	.	AC=1;AF=0.500;AN=2;HP=1;HapScore=1;MGOF=2;MMLQ=26;NF=58;NR=80;SC=ACAACCAAGTGACTCTGACCT;SbPval=0.58;Source=Platypus;TC=155;TCF=66;TCR=89;TR=138;WE=15599362;set=Platypus	GT:AD:AF:DP	1/0:17,138:0.89:155
chr21	15646397	rs8129984	A	G	18807.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.43;ReadPosRankSum=1.515;SOR=0.392;set=HC	GT:AD:AF:DP	1/1:1,413:1.00:414
chr21	15646405	rs2236001	C	A	20223.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.11;ReadPosRankSum=3.511;SOR=0.470;set=HC	GT:AD:AF:DP	1/1:6,486:0.99:492
chr21	15646553	rs28413131	G	C	14370.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:35,600:0.94:635
chr21	15652069	rs2254297	A	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	15660716	rs1153305	G	A	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr21	15663704	rs372000716	TA	T	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.882;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:70,50:0.42:120
chr21	15663777	rs34559607	A	AGTGT,AGTGTGT	5070.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=148;set=Intersection	GT:AF:DP	1/2:0.29,0.71:124
chr21	15671744	.	C	G	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=193.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=3.815;SOR=8.286;set=HC	GT:AD:AF:DP	0/1:118,62:0.34:180
chr21	15748186	rs2822642	C	A	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr21	15755349	rs7281846	T	C	91104.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.885;ClippingRankSum=0.000;DB;DP=4370;ExcessHet=3.0103;FS=1.070;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=0.207;SOR=0.607;set=HC	GT:AD:AF:DP	1/1:304,3888:0.93:4192
chr21	15918714	rs12329657	A	G	3448.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:23,153:0.87:176
chr21	15954528	rs2822785	G	A	14768.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:78,661:0.89:739
chr21	15954660	rs2822787	T	C	21966.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=1112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;MQRankSum=0.350;QD=20.40;ReadPosRankSum=2.380;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:116,961:0.89:1077
chr21	15964920	rs466913	C	G	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr21	15966372	.	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=-0.066;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:260,38:0.13:298
chr21	15966421	rs460852	T	A	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr21	15974409	rs456067	T	C	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	15984982	rs2822809	C	A	9606.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr21	15991786	rs1292586	C	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	16015250	rs458292	A	G	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	16340289	rs2229741	C	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.385;QD=0.24;ReadPosRankSum=0.013;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:615,89:0.13:704
chr21	17221976	rs17275518	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.639;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=7.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-2.208;SOR=0.108;set=HC	GT:AD:AF:DP	0/1:67,11:0.14:78
chr21	17238521	rs147076784	AAT	A	158.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:104,27:0.21:131
chr21	17533071	rs57492212	C	CT	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=62.27;MQRankSum=-1.101;QD=1.50;ReadPosRankSum=0.075;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:121,17:0.12:138
chr21	17533075	rs147455337	T	TTTCTTC	5869.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.109;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=62.76;MQRankSum=2.066;QD=31.22;ReadPosRankSum=1.831;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:26,162:0.86:188
chr21	17560174	rs10629120	T	TTCCTTCCC	9658.73	.	AC=2;AF=1.00;AN=2;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.18;SOR=2.145;set=HC	GT:AD:AF:DP	1/1:3,250:0.99:253
chr21	18814246	rs5842640	G	GT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=7.828;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.795;QD=1.25;ReadPosRankSum=1.150;SOR=2.219;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr21	18816599	.	C	CT	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=2.778;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.489;QD=1.81;ReadPosRankSum=0.261;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:101,44:0.30:145
chr21	18966724	rs5842649	GACAA	G	1210.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	18976385	rs67787603	C	A	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:7,144:0.95:151
chr21	19190427	rs243556	C	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	19628809	rs201642242	C	CT	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.620;QD=0.92;ReadPosRankSum=0.729;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:266,62:0.19:328
chr21	19685405	rs7281534	A	G	21231.77	.	AC=2;AF=1.00;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	1/1:0,825:1.00:825
chr21	19687376	rs2144203	G	A	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr21	19704296	rs1155847	C	T	1362.10	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:7,55:0.89:62
chr21	19713821	rs2824751	C	T	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr21	19744415	.	A	ATG	1711.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=3.415;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.680;QD=15.28;ReadPosRankSum=0.004;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:30,82:0.73:112
chr21	19770117	rs2824803	T	C	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	19770734	rs2824805	G	C	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	20058298	rs6517825	C	T	6436.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr21	22643720	rs8127865	A	G	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.43;ReadPosRankSum=-0.195;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,26:0.81:32
chr21	22652720	rs9306013	C	T	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	22653099	rs1012523	G	A	225.18	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=-0.100;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr21	22656409	rs34246223	AT	A	627.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	22658544	rs111713483	TTTTGTGA	T	2076.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:11,52:0.83:63
chr21	22696837	rs232467	C	G	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr21	22696881	rs11334381	TG	T	4740.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr21	22840930	rs2250501	A	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=3.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-1.108;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:209,30:0.13:239
chr21	22910116	rs2826891	C	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.25;ReadPosRankSum=0.718;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr21	22910123	rs9979040	T	G	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.14;ReadPosRankSum=1.288;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr21	26959986	rs67668070	TATGA	T	8421.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:44,206:0.82:250
chr21	26961086	rs2829807	T	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.299;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:155,26:0.14:181
chr21	26965100	rs2829809	C	A	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr21	26965148	rs1135638	G	A	8190.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr21	26965205	rs1057885	T	C	8222.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr21	26969703	rs1135618	T	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	26973663	rs140202502	A	ATATACT	14189.73	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=46.52;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr21	26976250	rs7278164	A	G	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.765;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:455,85:0.16:540
chr21	26978950	rs3989369	A	G	9179.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr21	26979620	rs61100311	C	T	33228.77	.	AC=1;AF=0.500;AN=2;DB;DP=1830;set=Intersection	GT:AD:AF:DP	0/1:316,1500:0.83:1816
chr21	26979628	rs9653688	G	A	2427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=2018;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.026;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:1665,339:0.17:2004
chr21	27056250	rs8133602	A	G	6455.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:45,294:0.87:339
chr21	27078270	rs2276220	G	A	3793.94	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:21,164:0.89:185
chr21	27086413	rs6516687	G	A	1110.22	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:6,49:0.89:55
chr21	27086916	rs8134513	C	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,37:0.93:40
chr21	27097053	rs73161764	G	T	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.79;ReadPosRankSum=1.968;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:19,84:0.82:103
chr21	27097458	rs11909995	G	A	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:14,102:0.88:116
chr21	27101899	rs3216073	CT	C	3128.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:23,102:0.82:125
chr21	27124132	rs66996867	G	T	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	27137213	rs3216072	GT	G	174.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr21	27141273	rs56048433	C	CATTT	4133.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	27141292	rs7276647	A	G	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:19,103:0.84:122
chr21	27277240	rs45467193	T	A	5570.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:38,243:0.86:281
chr21	27318418	rs2409160	G	C	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr21	27327100	rs417676	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	27327862	rs2251337	G	C	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	27369481	rs2051504	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	27382267	.	TA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.09;ReadPosRankSum=-1.295;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:302,68:0.18:370
chr21	27382362	rs11455808	A	AG	13826.73	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr21	27382417	rs2409166	C	G	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr21	27423561	rs2070655	G	T	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:25,225:0.90:250
chr21	27852724	rs966410	A	G	18183.77	.	AC=2;AF=1.00;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	1/1:96,799:0.89:895
chr21	28296324	rs151065	A	G	8905.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:1,350:1.00:351
chr21	28296389	rs3746839	A	G	11736.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:96,520:0.84:616
chr21	28302355	rs226794	A	G	19837.77	.	AC=2;AF=1.00;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	1/1:0,782:1.00:782
chr21	28326276	rs233894	G	A	1704.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.73;ReadPosRankSum=-0.616;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:4,71:0.95:75
chr21	28327320	rs12626485	C	T	750.85	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:3,31:0.91:34
chr21	30250555	rs2205446	T	C	8253.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr21	30250615	rs2205447	T	C	13302.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr21	30250812	rs2205448	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	30254695	rs2254507	C	T	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:11,97:0.90:108
chr21	30255347	rs61735765	C	A	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:11,78:0.88:89
chr21	30257418	rs1997605	G	A	8969.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:50,385:0.89:435
chr21	30257560	rs1997606	C	G	34539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=1817;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.18;ReadPosRankSum=-1.661;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:240,1561:0.87:1801
chr21	30257568	rs1997607	T	C	73542.77	.	AC=2;AF=1.00;AN=2;DB;DP=1770;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.93;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,1754:1.00:1754
chr21	30257729	rs2859734	A	G	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:13,132:0.91:145
chr21	30303388	.	GGTGT	G	1201	.	AC=2;AF=1.00;AN=2;BRF=0.59;FR=1.0000;HP=1;HapScore=1;MGOF=6;MMLQ=27;MQ=60.03;NF=10;NR=18;PP=1201;QD=43.0;SC=ACATTGTGTAGGTGTGTGTGT;SbPval=0.79;Source=Platypus;TC=35;TCF=15;TCR=20;TR=28;WE=30303404;WS=30303378;set=Platypus	GT:AD:AF:DP	1/1:7,28:0.80:35
chr21	30303389	rs200449083	GT	G	1928.06	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.358;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=-3.844;QD=22.95;ReadPosRankSum=0.256;SOR=1.060;set=HC	GT:AD:AF:DP	1/1:10,74:0.88:84
chr21	30303391	.	GTGTGT	G,GGT	1675.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.343;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=-3.818;QD=20.19;ReadPosRankSum=0.729;SOR=1.034;set=HC	GT:AD:AF:DP	1/2:10,15,58:0.18,0.70:83
chr21	30303685	rs73190119	C	A	2250.96	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:10,92:0.90:102
chr21	30315730	rs2274800	G	A	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.46;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	30316304	.	T	TTTAA,TTTAAGATTTAAGAA	1843.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=73;set=Intersection	GT:AF:DP	0/1:0.80:59
chr21	30316305	rs3053575	G	GATTTAAGAAA	1837.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.128;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=6.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.41;ReadPosRankSum=1.262;SOR=2.062;set=HC	GT:AD:AF:DP	0/1:12,43:0.78:55
chr21	30316308	rs2026246	A	T	1501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.29;ReadPosRankSum=-2.141;SOR=2.087;set=HC	GT:AD:AF:DP	0/1:12,36:0.75:48
chr21	30319637	rs2832143	A	T	221.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr21	30324644	rs2832145	T	G	2225.79	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:14,100:0.88:114
chr21	30324755	rs2832146	G	A	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	30325875	rs2243491	A	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	30338293	rs5843357	G	GC	5294.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr21	30339234	rs61735768	T	C	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=1256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.04;ReadPosRankSum=-0.631;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:1098,147:0.12:1245
chr21	30341891	rs2254796	A	G	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr21	30354610	rs2832150	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.266;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.403;QD=0.28;ReadPosRankSum=0.124;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:247,38:0.13:285
chr21	30357307	rs2245434	C	T	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:4,57:0.93:61
chr21	30391671	rs138840391	GAAA	G	809.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.24;ReadPosRankSum=-1.481;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr21	30400110	rs8133768	G	A	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	30408670	rs2274802	A	T	12956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0.000;DB;DP=688;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=0.373;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:82,592:0.88:674
chr21	30409900	rs11302034	CT	C	65.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.671;QD=5.43;ReadPosRankSum=-2.052;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr21	30442475	rs2183569	T	C	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.90;ReadPosRankSum=-1.725;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr21	30442481	rs2183570	C	T	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.21;ReadPosRankSum=-1.115;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr21	30464141	rs8132105	G	A	5890.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:43,266:0.86:309
chr21	30464623	rs147901306	A	AACTCCAGTTTATAGG	1344.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr21	30464916	rs2832170	C	T	4994.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:39,210:0.84:249
chr21	30481371	rs2832181	G	T	10585.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.741;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=0.548;SOR=0.665;set=HC	GT:AD:AF:DP	1/1:1,410:1.00:411
chr21	30481612	rs2832182	G	A	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr21	30505836	rs9636820	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.806;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:97,19:0.16:116
chr21	30532146	rs66780570	TA	T	2176.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.661;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=0.769;QD=14.04;ReadPosRankSum=0.970;SOR=1.327;set=HC	GT:AD:AF:DP	1/1:13,142:0.92:155
chr21	30532437	rs2832224	G	A	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:27,254:0.90:281
chr21	30714776	rs388707	T	C	12331.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:80,552:0.87:632
chr21	30715275	rs425989	T	C	862.78	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,33:0.92:36
chr21	30830393	rs9981313	T	G	8383.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr21	31655212	rs1557291	A	C	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr21	31661691	rs8127420	A	G	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0.000;DB;DP=821;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=2.365;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:680,127:0.16:807
chr21	31709691	rs2244485	G	A	6817.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:57,299:0.84:356
chr21	31720287	rs762377	A	G	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	31744127	rs877346	A	T	9468.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:60,404:0.87:464
chr21	31802768	rs2226548	G	A	32623.77	.	AC=2;AF=1.00;AN=2;DB;DP=1254;set=Intersection	GT:AD:AF:DP	1/1:0,1244:1.00:1244
chr21	31803159	rs1539783	T	C	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr21	31803210	rs1539784	C	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	31812601	rs76898026	C	T	9316.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:76,420:0.85:496
chr21	31812772	rs2832873	C	A	22642.77	.	AC=2;AF=1.00;AN=2;DB;DP=892;set=Intersection	GT:AD:AF:DP	1/1:1,867:1.00:868
chr21	31869286	rs2298437	T	C	42264.77	.	AC=2;AF=1.00;AN=2;DB;DP=1638;set=Intersection	GT:AD:AF:DP	1/1:3,1609:1.00:1612
chr21	31913981	rs5843453	AG	A	60999.73	.	AC=2;AF=1.00;AN=2;DB;DP=1365;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:2,1344:1.00:1346
chr21	31914000	rs1023364	T	A	65299.77	.	AC=2;AF=1.00;AN=2;DB;DP=1588;set=Intersection	GT:AD:AF:DP	1/1:0,1564:1.00:1564
chr21	31964916	rs9305426	A	C	47916.77	.	AC=2;AF=1.00;AN=2;DB;DP=1777;set=Intersection	GT:AD:AF:DP	1/1:0,1772:1.00:1772
chr21	31973516	rs198915	T	A	10325.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr21	31973685	rs1961491	C	T	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	31992864	rs1702405	A	G	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr21	32119417	.	G	A	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DP=2202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.703;QD=0.57;ReadPosRankSum=-1.077;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:1877,308:0.14:2185
chr21	32201822	rs9982910	G	T	30232.77	.	AC=1;AF=0.500;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	0/1:105,727:0.87:832
chr21	32201835	rs9982675	A	C	32679.77	.	AC=1;AF=0.500;AN=2;DB;DP=994;set=Intersection	GT:AD:AF:DP	0/1:120,864:0.88:984
chr21	32201866	rs9982755	A	G	22285.77	.	AC=2;AF=1.00;AN=2;DB;DP=1098;set=Intersection	GT:AD:AF:DP	1/1:110,978:0.90:1088
chr21	32201951	rs9982775	A	G	16666.77	.	AC=2;AF=1.00;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	1/1:50,693:0.93:743
chr21	32201969	rs35359062	GA	G	27776.73	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr21	32202106	rs2833118	T	A	3496.28	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:21,154:0.88:175
chr21	32410619	rs2833198	A	G	39331.77	.	AC=2;AF=1.00;AN=2;DB;DP=1902;set=Intersection	GT:AD:AF:DP	1/1:195,1685:0.90:1880
chr21	32433394	rs111950615	T	C	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:9,107:0.92:116
chr21	32434766	rs2070405	C	T	6688.74	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:36,291:0.89:327
chr21	32499473	rs2070410	A	G	21844.77	.	AC=2;AF=1.00;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	1/1:0,838:1.00:838
chr21	32502414	rs2070413	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=0.556;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:15,37:0.71:52
chr21	32524852	rs9305453	A	G	11661.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr21	32525302	rs723470	A	C	14301.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,568:1.00:568
chr21	32525345	rs723469	G	A	17815.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,700:1.00:700
chr21	32526525	rs12482307	C	T	9490.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr21	33057312	rs367618143	TG	T	180.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=22.59;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	33068865	rs11389728	T	TA	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.032;QD=0.90;ReadPosRankSum=-1.402;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:99,23:0.19:122
chr21	33068962	rs7280330	T	C	3788.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:51,175:0.77:226
chr21	33073985	rs204734	T	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	33246026	.	G	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-0.235;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr21	33296752	rs199631073	A	G	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.712;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:112,49:0.30:161
chr21	33312539	.	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-0.787;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr21	33331458	rs3819152	A	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr21	33346936	rs55976679	C	T	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:70,181:0.72:251
chr21	33347200	rs76055360	A	G	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	33355760	rs737103	G	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.164;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr21	33368188	rs2070371	T	C	8180.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr21	33370900	rs9305483	T	C	14625.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr21	33371123	rs10775648	C	T	4209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-2.053;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:698,271:0.28:969
chr21	33371540	rs2070372	T	G	5029.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr21	33641152	rs8129993	A	G	590.74	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr21	33641240	rs57672040	A	AT	1192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.279;QD=12.56;ReadPosRankSum=1.874;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:28,67:0.71:95
chr21	33641251	.	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=-1.010;QD=0.99;ReadPosRankSum=0.009;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:85,21:0.20:106
chr21	33690293	rs2070380	C	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	33691502	rs11402028	G	GC	2848.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	33691754	rs958828	G	A	9879.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr21	33694224	rs3761342	C	G	14368.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr21	33710001	rs13046776	C	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	33719695	rs2070378	C	T	15716.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,593:1.00:593
chr21	33721843	rs743306	T	C	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	33726201	rs2298363	C	T	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr21	33730013	rs7283283	T	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	33740637	rs7276783	G	A	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	33749533	rs4816431	A	C	8573.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr21	33755761	rs185028523	C	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.272;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:407,63:0.13:470
chr21	33980042	rs140374402	G	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=-1.397;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:70,16:0.19:86
chr21	33982072	.	C	CA	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.368;QD=1.88;ReadPosRankSum=-0.458;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:134,45:0.25:179
chr21	34059347	.	T	C	2193.77	.	AC=1;AF=0.500;AN=2;DP=126;set=Intersection	GT:AD:AF:DP	0/1:19,100:0.84:119
chr21	34127438	rs5843565	TA	T	500.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.433;QD=14.73;ReadPosRankSum=1.274;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr21	34157085	.	G	GT	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.152;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:61,26:0.30:87
chr21	34157235	rs35174687	GT	G	1401.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:36,98:0.73:134
chr21	34165864	rs2231391	C	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	34166190	rs74617086	A	T	7669.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr21	34166343	rs2231390	C	T	17938.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,685:1.00:685
chr21	34169181	rs762228	A	G	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	34169317	rs72564613	C	CT	8377.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr21	34538065	rs11444667	C	CT	6215.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr21	34540594	rs11379155	C	CT	2286.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	34542356	rs2834118	A	G	9992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.534;QD=17.53;ReadPosRankSum=0.506;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:125,445:0.78:570
chr21	34616157	rs2834156	T	C	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	34617213	rs2834158	T	C	10928.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr21	34617729	rs2252639	A	G	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	34617950	rs2252650	A	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	34624386	rs10628836	C	CATCT	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.441;QD=3.09;ReadPosRankSum=1.193;SOR=0.308;set=HC	GT:AD:AF:DP	0/1:81,14:0.15:95
chr21	34624917	rs2236757	A	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	34635079	.	C	CT	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.441;QD=1.77;ReadPosRankSum=1.299;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:217,77:0.26:294
chr21	34638859	rs2239573	G	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-1.152;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:157,37:0.19:194
chr21	34649123	rs2285020	G	A	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:210,100:0.32:310
chr21	34660717	rs62227994	C	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr21	34666111	rs139112783	CAA	C	892.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.77;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:6,35:0.85:41
chr21	34666160	rs999261	A	G	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:27,103:0.79:130
chr21	34666376	rs1467845	A	G	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr21	34666390	rs999260	G	A	4057.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:29,180:0.86:209
chr21	34668747	rs3171425	A	G	18459.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:1,721:1.00:722
chr21	34668976	rs8178562	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr21	34697197	rs145550964	G	GGTGTGTGT	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=6.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-1.197;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr21	34697264	rs2850015	T	C	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr21	34721348	rs2834196	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=1.150;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr21	34726127	rs2856973	T	A	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.54;ReadPosRankSum=-0.970;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:13,46:0.78:59
chr21	34799350	rs11910627	C	G	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.941;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr21	34804966	rs1532	T	C	10782.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr21	34805197	rs17883129	C	T	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=0.256;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:13,46:0.78:59
chr21	34809049	rs2040120	T	A	1902.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.742;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.13;ReadPosRankSum=-0.014;SOR=1.754;set=HC	GT:AD:AF:DP	1/1:2,84:0.98:86
chr21	34823252	rs2834220	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	34837623	rs2248820	C	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	34837786	rs2243511	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr21	34871107	rs35013844	AT	A	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.977;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.931;QD=6.14;ReadPosRankSum=1.191;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:18,39:0.68:57
chr21	34871133	rs7278879	C	T	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:11,49:0.82:60
chr21	34876708	rs2070388	G	C	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362;ClippingRankSum=0.000;DB;DP=626;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.987;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:494,123:0.20:617
chr21	34878454	.	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=0.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.520;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:101,31:0.23:132
chr21	34889573	.	C	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.464;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.488;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr21	34894623	rs2834234	T	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr21	34897113	rs8788	C	T	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr21	34900924	rs5843611	G	GA	940.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.271;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=9.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=2.028;SOR=1.678;set=HC	GT:AD:AF:DP	0/1:47,72:0.61:119
chr21	34901062	rs57178645	TA	T	514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.304;QD=8.17;ReadPosRankSum=-1.463;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:15,48:0.76:63
chr21	34903875	rs72018585	A	AT	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.570;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:129,48:0.27:177
chr21	34915324	rs1041745	CG	GC	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr21	34925142	rs13433428	C	T	9373.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr21	34926043	rs61743204	G	A	1142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.146;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:336,98:0.23:434
chr21	34926260	rs13047599	C	T	12054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-1.431;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:178,564:0.76:742
chr21	34927396	.	AAGCCGCCGCAGCCGCACCCCC	A	962.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=0.441;QD=15.28;ReadPosRankSum=-1.305;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:17,46:0.73:63
chr21	34927468	.	C	G	186	.	AC=1;AF=0.500;AN=2;BRF=0.58;FR=0.5000;HP=1;HapScore=1;MGOF=17;MMLQ=23;MQ=56.02;NF=11;NR=7;PP=186;QD=12.2650673637;SC=CCAGCCGCCGCAGCCGCACCC;SbPval=0.79;Source=Platypus;TC=72;TCF=38;TCR=34;TR=18;WE=34927476;WS=34927458;set=Platypus	GT:AD:AF:DP	0/1:54,18:0.25:72
chr21	34945074	.	G	GT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-1.133;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr21	34945721	rs3174808	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.823;QD=0.48;ReadPosRankSum=-0.008;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:153,25:0.14:178
chr21	34948684	rs34377180	G	GA	8482.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr21	34948696	rs34373121	GA	G	5177.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:6,202:0.97:208
chr21	34954602	rs77179527	AG	A	739.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr21	34959776	rs7283856	G	A	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=0.225;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr21	34969423	rs3761351	G	A	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:10,50:0.83:60
chr21	35012719	rs6517185	GG	CT	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	35094849	.	G	GT	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-1.654;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr21	35124253	rs2834255	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	35127735	rs2154434	C	A	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr21	35134084	rs11444980	G	GC	6643.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr21	35166803	rs2073368	G	T	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.374;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:117,43:0.27:160
chr21	35166945	rs2073369	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-2.198;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr21	35174897	rs11390596	T	TA	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr21	35186058	rs149351561	T	TTTTA	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr21	35201281	rs2245099	G	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=1.182;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:175,56:0.24:231
chr21	35228953	rs9305535	A	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.205;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:94,22:0.19:116
chr21	35237349	rs9984732	A	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:82,39:0.32:121
chr21	35237608	rs9976801	T	C	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=2.432;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:122,43:0.26:165
chr21	35258514	.	TAA	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.492;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr21	35260481	rs2073370	T	C	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-1.616;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:150,59:0.28:209
chr21	35275955	rs9980730	G	A	11836.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr21	35278919	rs3831798	A	ACT	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.293;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:81,12:0.13:93
chr21	35281393	rs4591	A	G	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-0.873;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:89,46:0.34:135
chr21	35284734	rs2211873	A	G	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.322;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:92,33:0.26:125
chr21	35286740	rs12626438	A	G	1711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.204;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:417,133:0.24:550
chr21	35446136	rs79607614	C	G	2384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=1.952;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:43,109:0.72:152
chr21	35467372	rs11295804	AC	A	383.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	35467472	rs11295803	AG	A	8282.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr21	35467645	rs8129891	A	G	6105.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr21	35469193	rs4817617	C	A	8845.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr21	35469708	rs35685523	G	GA	166.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	35742722	rs9305548	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr21	35774491	rs72279748	AT	A	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.721;QD=1.18;ReadPosRankSum=0.185;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:173,56:0.24:229
chr21	35821821	rs1805127	T	C	3668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=831;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.423;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:583,244:0.30:827
chr21	35893642	rs11700452	A	G	4709.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:80,222:0.74:302
chr21	35896032	rs6517239	A	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr21	35985895	rs915540	C	T	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	36041978	rs7280973	A	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	36042203	rs9680380	G	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	36079735	.	G	GCACACACA,GCACACACACACA,GCACACACACA	858.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=47;set=Intersection	GT:AF:DP	1/2:0.50,0.50:16
chr21	36080204	rs6517253	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	36080398	rs2070368	T	C	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr21	36080908	rs2834597	G	A	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	36081626	rs3819041	C	G	7737.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr21	36193871	rs2018329	T	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	36206315	.	C	CGT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.350;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr21	36206932	rs11702841	G	A	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	36410869	rs370849672	CCTCTCTCTCTCT	C	432.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=14.42;ReadPosRankSum=1.555;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr21	36410906	rs62218495	C	G	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=24.48;ReadPosRankSum=1.807;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr21	36410908	rs62218496	C	G	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=24.67;ReadPosRankSum=2.004;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr21	36410910	rs8126848	C	G	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=29.67;ReadPosRankSum=2.004;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr21	36410948	.	TAG	T	183	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=2;HapScore=1;MGOF=90;MMLQ=17;MQ=57.89;NF=6;NR=9;PP=183;QD=12.6;SC=GTGTGTGAGATAGAGAGAGAG;SbPval=0.1;Source=Platypus;TC=37;TCF=8;TCR=29;TR=15;WE=36410957;WS=36410938;set=Platypus	GT:AD:AF:DP	1/0:22,15:0.41:37
chr21	36421036	rs8133634	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:33,70:0.68:103
chr21	36422282	rs71324342	A	AAC	562.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=11.97;ReadPosRankSum=0.739;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:17,30:0.64:47
chr21	37092980	rs9981293	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.082;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:102,28:0.22:130
chr21	37408608	rs68024241	AACGT	A	478.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr21	37414194	.	C	CAA	27	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5014;HP=11;HapScore=3;MGOF=2;MMLQ=27;MQ=60.0;NF=0;NR=3;PP=27;QD=12.0;SC=TTTCTATATTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=3;WE=37414202;WS=37414184;set=Platypus	GT:AD:AF:DP	1/0:2,3:0.60:5
chr21	37420445	rs76783989	A	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.451;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr21	37425955	rs762360	C	T	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=1.737;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:111,55:0.33:166
chr21	37425971	rs762361	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=1.649;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:87,41:0.32:128
chr21	37429679	rs7282629	G	C	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.54;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	37429778	.	TA	T	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=-0.000;QD=5.36;ReadPosRankSum=1.584;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr21	37443157	rs28637634	T	G	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.764;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=11.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=0.384;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr21	37443163	rs113287155	T	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.068;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=10.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.724;SOR=4.209;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr21	37443480	rs1005696	T	G	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=2.387;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:242,89:0.27:331
chr21	37443565	rs1005695	G	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.339;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr21	37507501	rs8133052	G	A	6505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=-0.217;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:147,308:0.68:455
chr21	37507745	rs881711	C	T	11818.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr21	37507769	rs881712	C	T	6324.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:136,301:0.69:437
chr21	37507906	rs45581835	C	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr21	37509995	rs12626192	C	T	162.89	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr21	37518362	rs2835286	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	37518706	rs1056892	G	A	2017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.288;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:381,142:0.27:523
chr21	37571667	rs7281674	T	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr21	37572810	rs9979031	G	A	6334.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:75,278:0.79:353
chr21	37580881	rs2835320	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr21	37583804	rs2239568	C	T	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.580;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.752;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:370,111:0.23:481
chr21	37586236	rs73202247	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr21	37586877	rs2850079	T	C	7548.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.939;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr21	37599824	rs7280662	T	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.750;QD=4.18;ReadPosRankSum=-1.319;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr21	37609571	rs2835322	T	C	23751.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.103;ClippingRankSum=0.000;DB;DP=944;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.48;ReadPosRankSum=0.201;SOR=0.285;set=HC	GT:AD:AF:DP	1/1:2,930:1.00:932
chr21	37617630	rs4817788	T	G	4438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.366;ClippingRankSum=0.000;DB;DP=1027;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.218;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:720,297:0.29:1017
chr21	37649138	.	C	CAA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-1.664;QD=2.34;ReadPosRankSum=0.232;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr21	37706087	.	G	GT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=2.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.971;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr21	37749689	rs2850081	C	T	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr21	37763761	.	CAA	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.70;ReadPosRankSum=-0.126;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr21	37769689	rs116995016	C	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.817;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr21	37784070	rs218630	G	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	38071988	rs116948941	A	G	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr21	38081562	rs2070647	T	G	13643.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=0.503;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:2,542:1.00:544
chr21	38081577	rs2070648	C	G	11864.73	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,450:1.00:450
chr21	38084773	rs2835443	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr21	38092039	rs2070650	A	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	38092247	rs145363163	GA	G	3148.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:24,194:0.89:218
chr21	38113998	rs2070519	C	A	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	38117308	rs2073601	C	A	14886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=990;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-0.573;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:281,689:0.71:970
chr21	38118089	rs9982519	G	C	9142.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:175,426:0.71:601
chr21	38139632	rs2073421	C	A	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	38302543	rs140568778	CA	C	1070.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=0.679;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:142,49:0.26:191
chr21	38302769	rs2073425	C	T	2117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=-0.643;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:49,103:0.68:152
chr21	38308911	rs1065758	G	A	1998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.951;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:379,133:0.26:512
chr21	38334256	rs71724041	GA	G	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.664;QD=1.36;ReadPosRankSum=0.557;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:85,32:0.27:117
chr21	38338651	rs1055699	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr21	38338665	rs1055700	C	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr21	38338969	rs9980304	T	C	2881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=1.705;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:38,136:0.78:174
chr21	38339023	rs184468430	G	A	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.18;ReadPosRankSum=-1.036;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:6,37:0.86:43
chr21	38380368	rs2277786	A	G	1307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.813;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:316,101:0.24:417
chr21	38385680	rs11088373	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.466;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr21	38444863	rs2507733	C	T	6139.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr21	38494273	rs61999340	C	G	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:30,65:0.68:95
chr21	38495185	rs11440324	G	GT	2295.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	38495213	rs11440325	G	GA	3307.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr21	38495270	rs11440326	A	AT	6520.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr21	38498178	rs67628252	GT	G	135	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	38498185	rs66532388	GC	G	135	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	38498585	rs12185849	G	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	38512956	rs1133001	A	G	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	38517011	rs764176	A	G	3000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=-0.496;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:63,144:0.70:207
chr21	38517021	rs1344047	G	A	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.01;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr21	38517058	rs764175	C	T	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	38520091	rs9978203	C	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	38522618	rs2257091	G	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	38523266	rs3737540	C	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	38525198	rs2051162	G	A	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	38525356	rs1053808	T	C	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr21	38525652	rs767998	T	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	38528866	rs2835635	A	G	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.95;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	38528872	rs10706050	TG	T	1364.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	38531863	rs4817852	T	C	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	38531921	rs1787365	C	A	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	38532058	rs34771928	TG	T	6208.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr21	38532068	rs113972351	G	GA	4783.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr21	38532086	rs34586966	TG	T	5424.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	38532192	rs34367119	A	AT	823.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	38532901	rs5843796	G	GT	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	38532904	rs5843798	T	TA	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	38532910	rs5843800	A	AG	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	38534228	rs11424055	A	AT	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	38534234	rs57522570	C	T	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	38536642	rs34114322	AT	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=0.065;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr21	38539673	rs1793885	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	38539677	rs4988831	A	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	38539681	rs1793886	G	A	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	38539718	rs2000413	G	A	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	38539745	rs5843802	G	GA	876.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	38539836	rs5843803	T	TA	4014.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	38539844	rs2000415	G	A	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	38540089	rs2000416	T	A	64.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	38563686	rs61748840	G	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=1.213;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:97,23:0.19:120
chr21	38563725	rs2835655	G	A	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr21	38567902	rs2835659	C	T	8479.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=1.834;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr21	38567911	rs7280251	T	C	9304.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=1.494;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr21	38568009	rs1053966	G	C	18280.77	.	AC=2;AF=1.00;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	1/1:0,715:1.00:715
chr21	38568308	rs6579	C	T	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr21	38570055	rs34505047	T	TAA	138.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.87;ReadPosRankSum=-0.493;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr21	38574018	rs1053984	C	T	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	38599934	rs11300896	TG	T	4588.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=35.30;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr21	38600154	rs10716173	CG	C	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	38850640	rs928763	G	A	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=1.795;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	38858938	rs55650427	G	A	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.371;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:194,54:0.22:248
chr21	38862862	rs67837743	C	T	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	38865507	rs2835772	C	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:84,27:0.24:111
chr21	39086965	rs2070995	T	C	7333.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr21	39089582	rs857961	A	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	39213020	rs2836016	G	A	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	39325234	rs2836061	C	T	4871.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:83,225:0.73:308
chr21	39671476	rs2230033	G	A	5538.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:92,250:0.73:342
chr21	39739665	rs2836346	T	A	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=1.122;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:241,92:0.28:333
chr21	39775373	rs2836373	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	39818838	rs11701207	C	A	2891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=862;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.764;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:647,212:0.25:859
chr21	39822906	rs9305648	G	C	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.524;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:254,82:0.24:336
chr21	39823349	rs2051165	T	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr21	39870310	rs2836441	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.571;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr21	39947697	rs8129955	A	G	4966.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:68,229:0.77:297
chr21	40186439	rs77688599	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=0.328;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr21	40191431	rs457705	T	G	14146.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr21	40191638	rs461155	A	G	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr21	40250361	rs11464500	T	TA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.409;SOR=1.873;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr21	40250762	rs5843936	GA	G	1185.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,35:0.32:110
chr21	40250766	rs1569306	G	A	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,34:0.32:107
chr21	40547387	rs9305670	A	G	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	40549289	rs2142111	G	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	40549466	rs14194	T	C	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr21	40551943	rs34227163	A	G	14751.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr21	40551944	rs3835285	G	GT	14742.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr21	40552408	rs7280375	A	G	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr21	40553845	rs6517522	T	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	40555160	rs34294410	C	G	17664.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,694:1.00:694
chr21	40555351	rs13052882	G	C	12217.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr21	40571246	rs1041439	A	G	9934.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr21	40572072	rs2234543	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	40582181	rs35580733	TAG	T	404.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	40584598	rs6517529	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	40587003	rs11434832	G	GC	1213.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	40587049	rs4818004	A	G	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	40590624	rs35571600	A	C	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr21	40597215	rs139986112	A	AAAG	2537.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=43.75;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	40600313	rs11702268	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	40619887	rs2836955	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	40622731	rs146415119	G	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr21	40636354	rs58999088	TAAA	T	894.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=9.208;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.442;QD=27.96;SOR=4.078;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr21	40637047	.	GA	G	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.337;QD=2.36;ReadPosRankSum=-0.047;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr21	40642189	rs6517532	C	T	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	40642386	rs2836968	A	G	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	40646230	.	CGAGA	C,CGA	3476.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.406;QD=23.02;ReadPosRankSum=1.259;SOR=0.880;set=HC	GT:AD:AF:DP	1/2:5,31,115:0.21,0.76:151
chr21	40650621	rs973521	G	A	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	40650627	.	T	TA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.955;QD=1.18;ReadPosRankSum=0.882;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr21	40652142	rs2836972	G	A	8037.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr21	40684641	rs2272578	C	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	40684861	rs2297258	C	G	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.23;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	40684901	rs71316130	G	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.16;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	40684904	rs71316131	C	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.16;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	40685135	rs118102968	A	G	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr21	40685515	rs148082602	GCGC	G	1482.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=43.61;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	40715132	rs2070867	G	A	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	40715175	rs2776308	A	G	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	40719241	rs2249666	C	T	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	40720494	rs34613278	C	T	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.616;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-1.366;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:105,33:0.24:138
chr21	40720937	rs11541408	T	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr21	40769017	rs1060180	G	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr21	40778182	rs11558767	C	T	6315.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:115,291:0.72:406
chr21	40799955	rs2837028	A	C	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	40800371	rs2837029	C	T	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.421;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=2.241;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:372,98:0.21:470
chr21	40823902	rs11575939	C	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:294,129:0.30:423
chr21	40823981	rs6517549	G	A	11574.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr21	40824161	rs2837037	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:88,50:0.36:138
chr21	40847249	rs760284	T	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	40871810	rs9974333	T	C	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr21	40880878	rs74857292	G	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr21	40880881	rs138818478	CTTGAA	C	1389.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr21	40881096	rs78873181	A	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:82,33:0.29:115
chr21	40883671	rs3831201	G	GAGA	2122.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	40883712	rs79433162	T	C	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=1.499;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:95,20:0.17:115
chr21	40883800	rs74816414	A	G	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-1.412;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:105,21:0.17:126
chr21	40887185	rs1522	C	A	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.359;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:120,40:0.25:160
chr21	40969621	rs661650	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr21	40969826	rs662571	G	C	14429.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr21	40977763	rs73360110	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:37,12:0.24:49
chr21	40977826	rs506382	A	G	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-1.708;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:118,52:0.31:170
chr21	40978115	rs78905016	C	T	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.536;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:165,53:0.24:218
chr21	40981430	.	GA	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.924;QD=0.36;ReadPosRankSum=0.028;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:86,20:0.19:106
chr21	40981609	rs71316683	A	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:170,54:0.24:224
chr21	41032740	rs3746887	T	C	12903.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,502:1.00:502
chr21	41032804	rs734413	G	A	12489.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr21	41117368	rs403527	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	41117533	rs425320	T	C	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr21	41137362	rs9784201	A	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	41137499	rs12626544	A	G	2827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.734;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:471,189:0.29:660
chr21	41137507	rs2205204	G	C	21018.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr21	41142775	rs73217279	A	G	102.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=20.59;ReadPosRankSum=0.524;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr21	41142803	rs2837199	T	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=-0.107;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr21	41142940	rs2837200	G	A	1438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=0.035;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:27,67:0.71:94
chr21	41143246	rs62237180	G	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr21	41160242	rs456818	A	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	41165301	rs464574	A	G	261.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	41165566	rs460504	T	C	9691.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr21	41165677	rs463903	G	A	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	41297873	rs2037920	G	A	8198.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr21	41297992	rs2037921	C	T	19701.77	.	AC=2;AF=1.00;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	1/1:0,774:1.00:774
chr21	41298197	rs79882024	A	G	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.16;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr21	41384834	rs35506939	C	CTT	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=0.203;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr21	41416066	rs16999204	C	T	2322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.71;ReadPosRankSum=-2.510;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:30,109:0.78:139
chr21	41423812	rs11911000	G	T	4313.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:85,196:0.70:281
chr21	41434671	rs2837408	T	C	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	41434841	rs2837409	T	C	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	41446936	rs7275294	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr21	41447058	rs7275460	G	C	6984.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:123,320:0.72:443
chr21	41450804	rs199832149	G	A	7251.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:161,335:0.68:496
chr21	41455854	rs2297263	G	A	1698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=1.051;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:38,80:0.68:118
chr21	41514421	rs11701139	G	C	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr21	41514688	rs35155500	TA	T	1113.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;QD=33.75;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	41551175	rs3804022	G	C	161.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	42539569	rs11316732	AC	A	1653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.891;QD=3.55;ReadPosRankSum=0.292;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:368,98:0.21:466
chr21	42598396	rs9305731	A	G	278.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr21	42622657	rs960231	G	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,16:0.27:59
chr21	42622786	rs1046210	C	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=1.270;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:235,58:0.20:293
chr21	42710175	rs2158354	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr21	42716306	rs113057956	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-2.507;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr21	42717662	rs417708	T	C	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr21	42720579	rs111988437	G	A	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=2.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.428;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:278,75:0.21:353
chr21	42735719	rs2838029	G	A	3557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=1118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.295;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:834,270:0.24:1104
chr21	42767733	rs440364	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	42775179	rs112479250	G	GT	5943.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=1.224;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr21	42775180	rs459763	C	T	6238.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr21	42775555	rs462161	A	G	12155.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr21	42803840	rs456657	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	42803858	rs463856	A	G	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	42808015	rs468207	A	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=4.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.526;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:92,26:0.22:118
chr21	42812891	rs467960	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=1.225;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:140,36:0.20:176
chr21	42813933	rs145807679	A	AGTGTGT	89.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,6:0.17:35
chr21	42817930	rs469390	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.754;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:120,27:0.18:147
chr21	42818106	rs467773	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.769;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr21	42818132	rs364199	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr21	42821113	rs2070229	T	C	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:46,92:0.67:138
chr21	42822983	rs1050080	G	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=1.378;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr21	42824733	rs469304	G	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=1.734;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:164,37:0.18:201
chr21	42840580	rs462321	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	42842713	rs112132031	C	CCTAAGGCCTCGGG	3556.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=45.02;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	42842771	rs28524972	C	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	42843960	rs464431	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	42848560	rs140530035	CAG	C	11360.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr21	42850911	rs9974995	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	42850977	rs9974933	A	G	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr21	42851006	rs9975014	A	G	4498.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr21	42860307	rs422471	C	T	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	42860485	rs386416	G	C	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr21	42861332	rs429442	C	T	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	42879724	rs8126497	G	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,43:0.77:56
chr21	42879909	rs75603675	C	A	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.852;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:302,66:0.18:368
chr21	43132878	rs11701067	T	A	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=1.019;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr21	43133077	rs374244464	T	C	6109.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:76,283:0.79:359
chr21	43133145	rs6586229	A	G	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr21	43133231	rs79920045	T	G	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.20;ReadPosRankSum=1.648;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr21	43133243	rs138319143	ATTT	A	493.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.04;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	43133714	rs2838095	G	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr21	43133829	rs2838096	A	G	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	43161357	rs3746891	T	C	12235.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:2,467:1.00:469
chr21	43161805	rs2838113	G	A	2597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-1.440;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:639,200:0.24:839
chr21	43221483	rs3850706	A	G	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr21	43221826	rs2236696	T	C	7471.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr21	43222779	rs2838128	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr21	43224683	rs2298687	A	G	10310.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:1,410:1.00:411
chr21	43231271	rs28610063	A	G	8240.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr21	43236176	rs4075967	G	A	19135.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:0,733:1.00:733
chr21	43236252	rs28657504	A	G	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr21	43236284	rs4075968	G	A	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	43239972	rs28477638	A	G	21921.77	.	AC=2;AF=1.00;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	1/1:0,868:1.00:868
chr21	43240356	rs28360602	G	A	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	43243585	rs28545527	A	G	8127.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=1.387;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:2,319:0.99:321
chr21	43246223	rs28559700	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr21	43254463	rs2839388	A	G	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr21	43255359	rs2839391	G	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr21	43255509	rs2839392	C	T	9645.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:159,445:0.74:604
chr21	43255727	rs2839393	T	G	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	43256072	.	G	GGCCTCGCCCGCTCTCCTCCCT	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-0.385;QD=54.17;ReadPosRankSum=-2.638;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr21	43256076	.	C	CCACAGGCCT	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-0.309;QD=36.75;ReadPosRankSum=-1.642;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr21	43256082	rs8132216	A	G	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-0.289;QD=33.30;ReadPosRankSum=-0.727;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr21	43256252	rs4920098	C	T	7337.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr21	43256438	rs4920101	T	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	43258000	rs8127003	T	C	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	43258353	rs6586335	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	43267260	rs2277793	C	T	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr21	43274653	rs2277794	C	T	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	43279800	rs201297140	A	G	11660.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:179,547:0.75:726
chr21	43280405	rs78976620	C	G	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.936;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.063;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:106,28:0.21:134
chr21	43281651	rs7280316	C	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.53;ReadPosRankSum=-1.085;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr21	43281767	rs62621406	C	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.128;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.657;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:116,21:0.15:137
chr21	43298954	rs202107842	C	CG	874.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=31.24;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	43299354	rs141709929	G	C	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.29;ReadPosRankSum=0.378;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:25,76:0.75:101
chr21	43309191	rs2839403	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	43315057	rs2839411	C	T	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr21	43319180	rs9981024	T	C	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-2.406;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:149,45:0.23:194
chr21	43319214	rs9985096	C	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-1.020;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:228,74:0.25:302
chr21	43319424	rs9974123	C	T	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.371;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:159,29:0.15:188
chr21	43319534	rs511247	A	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	43319605	rs2839416	T	G	465.79	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr21	43325742	rs35279709	CA	C	3617.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:32,119:0.79:151
chr21	43325973	rs384749	A	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=0.162;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr21	43327117	rs2277795	C	T	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.582;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:70,21:0.23:91
chr21	43327856	rs3746906	A	G	6744.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr21	43329538	rs149070796	G	A	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-0.923;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr21	43332605	rs201192263	T	TA	623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.12;ReadPosRankSum=0.877;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr21	43332608	rs11387062	T	TA	616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.03;ReadPosRankSum=1.366;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr21	43332611	rs11387061	T	TA	638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.112;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.03;ReadPosRankSum=1.513;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr21	43332623	rs2026283	A	G	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-0.730;QD=26.94;ReadPosRankSum=1.821;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr21	43334669	rs3746907	G	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr21	43334896	rs3746908	A	G	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	43342272	.	CT	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.612;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr21	43373409	rs112301094	G	A	5687.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:54,253:0.82:307
chr21	43411126	.	G	C	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-1.471;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:234,57:0.20:291
chr21	43412705	rs61751943	A	G	4315.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:60,200:0.77:260
chr21	43413553	rs871546	T	G	9052.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr21	43413651	rs871545	T	C	15639.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr21	43413731	rs915837	C	T	8844.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr21	43496017	rs220285	C	G	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.26;ReadPosRankSum=-1.494;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:15,50:0.77:65
chr21	43496381	rs220286	G	T	5674.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:85,261:0.75:346
chr21	43504228	rs7278485	T	C	1516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.425;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:350,114:0.25:464
chr21	43510427	rs67055914	T	C	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.782;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:118,27:0.19:145
chr21	43510437	rs17114359	A	C	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-0.368;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:116,28:0.19:144
chr21	43510514	rs2839464	C	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:21,60:0.74:81
chr21	43513989	rs34421316	C	T	3893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.448;ClippingRankSum=0.000;DB;DP=1096;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.667;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:807,280:0.26:1087
chr21	43521647	rs66994219	G	A	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr21	43521902	rs12483409	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.979;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:73,13:0.15:86
chr21	43522349	rs220109	T	C	1830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=1.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.890;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:382,135:0.26:517
chr21	43523972	rs11701371	G	C	1532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-1.838;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:374,119:0.24:493
chr21	43529515	rs220120	G	C	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:48,8:0.14:56
chr21	43529548	rs35742122	A	AG	239.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:81,14:0.15:95
chr21	43529642	rs8127300	A	C	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.060;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:316,91:0.22:407
chr21	43529652	rs11371744	A	AC	2410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=1.684;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:340,93:0.21:433
chr21	43530856	rs2051401	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.354;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.124;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr21	43531008	rs220126	T	C	2451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.446;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.963;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:452,174:0.28:626
chr21	43531403	rs220127	C	G	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.991;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:170,68:0.29:238
chr21	43531632	rs220129	T	C	4544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=1271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.194;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:933,321:0.26:1254
chr21	43541342	rs220150	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=2.666;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:99,26:0.21:125
chr21	43546705	rs220157	T	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr21	43547788	rs220158	T	C	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr21	43548239	rs2839470	T	C	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr21	43549794	rs7275646	C	T	2710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.38;ReadPosRankSum=0.006;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:43,113:0.72:156
chr21	43557494	rs3819140	A	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.623;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.494;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr21	43557559	rs3819141	T	A	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr21	43557698	rs3819142	A	C	3904.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:61,183:0.75:244
chr21	43557735	.	CGCAGGCTGACAGGAAGGTGGGTGCGGAGTGGGGTGGGAGGT	C	1556.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	0/1:39,52:0.57:91
chr21	43557736	rs220178	G	A	601.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:87,39:0.31:126
chr21	43557778	.	C	T	721	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=27;MQ=65.37;NF=6;NR=8;PP=721;QD=53.9836580391;SC=GTGGGAGGTGCAGGCTGACAG;SbPval=0.47;Source=Platypus;TC=55;TCF=21;TCR=34;TR=14;WE=43557786;WS=43557725;set=Platypus	GT:AD:AF:DP	1/0:41,14:0.25:55
chr21	43639332	.	C	CCCGCCG	2288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=1.626;QD=8.00;ReadPosRankSum=0.175;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:214,72:0.25:286
chr21	43676586	rs7281684	A	T	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:52,181:0.78:233
chr21	43679438	rs915841	T	C	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=-0.356;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:31,68:0.69:99
chr21	43679513	rs915842	C	T	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.648;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=0.712;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:22,55:0.71:77
chr21	43679554	rs915843	C	T	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=0.485;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:13,30:0.70:43
chr21	43697195	rs2234718	A	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr21	43704650	rs2234719	C	T	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:283,107:0.27:390
chr21	43720525	rs1023156	A	G	3401.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:45,149:0.77:194
chr21	43732425	rs533093	C	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr21	43766560	rs225334	G	A	8125.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr21	43767500	rs225337	T	A	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:41,146:0.78:187
chr21	43770926	rs5844113	CT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.520;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.597;QD=1.71;ReadPosRankSum=-1.099;SOR=1.488;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr21	43786512	rs225358	C	T	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr21	43796913	rs1078272	T	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr21	43802775	rs9984719	C	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.456;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr21	43802796	rs9984728	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr21	43803167	rs2839500	T	C	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=2.510;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:318,80:0.20:398
chr21	43803412	rs8129105	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=7.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.350;SOR=2.655;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr21	43805637	rs2839501	C	T	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.151;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:392,97:0.20:489
chr21	43805656	rs8130564	T	C	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.710;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:384,97:0.20:481
chr21	43808964	rs225432	T	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr21	43815584	rs4920100	C	G	1804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=0.226;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:33,86:0.72:119
chr21	43824106	rs2277798	A	G	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=-1.878;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:199,59:0.23:258
chr21	43852146	rs58639264	A	G	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.362;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr21	43852160	rs2839512	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.947;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr21	43852232	rs13052676	C	T	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=2.318;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:138,49:0.26:187
chr21	43852355	rs2839513	T	C	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=2.781;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:247,81:0.25:328
chr21	43855067	rs1893592	A	C	3315.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:49,150:0.75:199
chr21	43862466	rs2254368	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr21	43863521	rs868092	A	G	5666.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:101,256:0.72:357
chr21	43864519	rs4920104	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr21	43867059	rs3827232	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr21	43892775	rs11203205	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.098;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr21	43892875	rs1043807	G	A	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.983;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:190,37:0.16:227
chr21	43897355	rs11702140	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr21	43955427	rs228056	A	G	209.31	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr21	43959770	rs228063	A	G	4436.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:75,205:0.73:280
chr21	43963759	rs228075	A	G	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:19,68:0.78:87
chr21	43984126	rs7282730	C	T	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=0.801;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:12,60:0.83:72
chr21	43985016	rs915874	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr21	43985955	rs228104	G	A	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:78,191:0.71:269
chr21	43985958	rs117821416	A	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:201,81:0.29:282
chr21	43986117	rs36113965	T	TC	4067.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:57,192:0.77:249
chr21	43986175	rs4919992	C	T	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:20,52:0.72:72
chr21	43987325	rs9977293	C	T	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.29;ReadPosRankSum=0.214;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:10,38:0.79:48
chr21	43987329	rs9979646	G	C	1446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.963;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.88;ReadPosRankSum=-0.559;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,36:0.82:44
chr21	43988437	rs7280392	G	A	6278.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:112,294:0.72:406
chr21	43999983	rs453592	T	C	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:54,118:0.69:172
chr21	44000052	rs380152	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr21	44000063	rs380161	T	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr21	44000078	rs453647	T	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr21	44000366	rs388907	A	G	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:31,85:0.73:116
chr21	44107989	rs2839574	A	G	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.218;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:286,75:0.21:361
chr21	44108228	rs13046426	A	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.144;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:114,35:0.23:149
chr21	44108243	rs13047947	C	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:65,21:0.24:86
chr21	44117425	rs2269143	G	A	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=2.310;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:411,112:0.21:523
chr21	44118958	rs1515755	T	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.776;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr21	44163839	rs6586344	A	G	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr21	44173971	rs57957426	CA	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.910;QD=0.60;ReadPosRankSum=-0.006;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:75,27:0.26:102
chr21	44178992	rs11702144	A	G	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:16,53:0.77:69
chr21	44180443	rs13047953	C	T	15252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=982;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=0.027;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:261,713:0.73:974
chr21	44180866	rs55905735	ACC	A,AC	1694.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=57;set=Intersection	GT:AF:DP	1/2:0.75,0.25:51
chr21	44190680	rs2269172	C	T	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:16,81:0.84:97
chr21	44274825	.	C	T	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.718;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:396,108:0.21:504
chr21	44296960	rs11700660	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,14:0.24:58
chr21	44371114	rs451887	T	C	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=26.77;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	44424689	rs3216136	G	GA	1528.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	44430325	rs234781	T	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	44437142	rs3737434	A	G	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-3.100;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:121,31:0.20:152
chr21	44445185	rs234719	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr21	44448763	rs170916	G	C	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:53,164:0.76:217
chr21	44448775	rs234728	G	A	4404.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:60,195:0.76:255
chr21	44449095	rs234729	G	A	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	44449917	rs234733	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,31:0.79:39
chr21	44452424	rs141407897	T	TTCCCTCACCACCCTCCGTCTCTTCG	198.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr21	44452455	rs378528	T	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	44475786	rs2124460	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.550;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:33,4:0.11:37
chr21	44475796	rs2124461	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-2.800;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr21	44475877	rs8132811	C	T	3948.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:69,175:0.72:244
chr21	44476759	rs234701	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	44480616	rs1801181	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.157;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:100,27:0.21:127
chr21	44485350	rs234706	G	A	5654.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:114,258:0.69:372
chr21	44486271	rs234707	G	T	1185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.70;ReadPosRankSum=1.239;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,54:0.81:67
chr21	44486324	rs234708	T	C	3577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-1.766;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:55,162:0.75:217
chr21	44487891	rs234713	G	A	15610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=1019;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=1.320;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:275,730:0.73:1005
chr21	44488033	rs234714	T	C	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr21	44488755	rs5844149	G	GA	446.70	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr21	44515685	rs2839634	T	C	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.273;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:138,48:0.26:186
chr21	44527669	rs17115876	T	G	2212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=715;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.441;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:526,166:0.24:692
chr21	44579990	rs68189421	G	A	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=0.384;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:13,30:0.70:43
chr21	44580019	rs143864709	AACACACACC	A	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.25;ReadPosRankSum=-3.061;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr21	44589215	rs872331	C	T	5801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=1.834;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:147,275:0.65:422
chr21	44589920	rs5844151	G	GC	802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.059;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.047;QD=9.33;ReadPosRankSum=1.201;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:44,42:0.49:86
chr21	44590059	rs870137	C	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.36;ReadPosRankSum=-0.661;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr21	44837524	rs376554812	C	A	4951.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:91,223:0.71:314
chr21	44837551	rs430552	G	A	20239.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.74;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,433:1.00:433
chr21	44837555	rs430554	G	A	20517.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.01;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr21	44839654	rs229346	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	44840382	rs657978	G	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.78;ReadPosRankSum=-0.111;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr21	44841036	rs2006191	A	G	11093.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:96,292:0.75:388
chr21	44841052	rs2006112	T	C	11106.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:89,285:0.76:374
chr21	45107518	rs7279959	A	G	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr21	45163714	rs114593958	T	G	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.021;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:105,30:0.22:135
chr21	45169005	rs9974827	A	G	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	45170285	rs1106797	A	G	8974.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr21	45170614	rs3042235	A	ATG	2616.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:14,84:0.86:98
chr21	45172628	rs2010795	G	A	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr21	45175717	rs35040005	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:88,38:0.30:126
chr21	45175958	rs7527	T	C	7902.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr21	45209714	rs2276245	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:68,21:0.24:89
chr21	45215046	rs2838371	T	C	2932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=0.650;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:384,98:0.20:482
chr21	45215055	rs2838373	C	G	3167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-0.334;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:411,112:0.21:523
chr21	45217559	rs2838378	T	C	1604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=2.685;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:447,132:0.23:579
chr21	45217753	rs2070538	C	T	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=2.203;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:110,35:0.24:145
chr21	45217929	rs2838379	T	C	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=2.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.521;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:234,72:0.24:306
chr21	45219524	rs4566449	T	C	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-1.128;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:100,28:0.22:128
chr21	45220483	rs915770	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.298;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:158,28:0.15:186
chr21	45220570	rs731935	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.209;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr21	45220787	rs2329576	A	G	7917.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr21	45222058	rs4818868	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-1.664;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr21	45388079	rs11324107	CG	C	2501.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:52,89:0.63:141
chr21	45390706	.	G	A	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-2.070;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:99,33:0.25:132
chr21	45390749	.	TA	T	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.061;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr21	45397766	.	C	CA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.467;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr21	45478904	rs71326023	C	CGTAAT	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.98;ReadPosRankSum=-1.254;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr21	45494183	rs2277805	G	A	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:48,114:0.70:162
chr21	45509650	rs2277806	A	C	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:37,161:0.81:198
chr21	45512094	rs3788104	G	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,47:0.76:62
chr21	45514141	rs11287102	TG	T	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	45514149	rs9941801	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	45514168	rs4819371	C	T	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	45514188	rs4818879	A	G	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	45518131	rs2242950	A	T	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:14,53:0.79:67
chr21	45527112	rs72257518	GCTC	G	70.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:20,4:0.17:24
chr21	45527460	rs2850153	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr21	45528919	rs2020945	G	A	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-0.637;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:251,77:0.23:328
chr21	45534032	rs2243999	C	T	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.425;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:348,104:0.23:452
chr21	45538512	rs5844173	TG	T	607.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:67,26:0.28:93
chr21	45538647	rs756553	T	C	2298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.669;QD=3.74;ReadPosRankSum=1.667;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:452,163:0.27:615
chr21	45538725	rs756554	C	A	2004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-0.876;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:286,121:0.30:407
chr21	45538782	rs756555	A	T	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:100,50:0.33:150
chr21	45539240	rs2855652	G	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr21	45539426	rs2071142	G	A	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.234;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:211,86:0.29:297
chr21	45540143	rs2855653	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr21	45540207	rs2850157	C	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.159;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:122,44:0.27:166
chr21	45540919	rs2071143	A	G	2699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=1.210;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:635,206:0.24:841
chr21	45544594	rs2187313	T	C	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.713;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:224,75:0.25:299
chr21	45550460	rs11311220	TC	T	1286.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	45553430	rs2187314	A	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=1.492;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:212,67:0.24:279
chr21	45553476	rs968713	A	C	1963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.371;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:473,145:0.23:618
chr21	45553596	rs968714	T	C	2889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.260;ClippingRankSum=0.000;DB;DP=1021;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.083;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:777,229:0.23:1006
chr21	45561039	rs1059813	T	C	2404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.187;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:627,187:0.23:814
chr21	45564575	rs2838496	G	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr21	45565473	rs7676	C	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.831;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:133,42:0.24:175
chr21	45642817	rs35694117	TA	T	911.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.243;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.339;QD=10.24;ReadPosRankSum=1.111;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:25,64:0.72:89
chr21	45643008	rs1048710	A	G	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:38,62:0.62:100
chr21	45648992	rs7278940	T	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:94,63:0.40:157
chr21	45649494	rs7278772	A	G	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	45649543	rs4818891	G	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.736;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-1.278;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr21	45649640	rs7280853	C	T	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr21	45649666	rs4511811	G	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.451;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:55,66:0.55:121
chr21	45649778	rs4568033	A	G	2581.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:162,135:0.45:297
chr21	45649848	rs13052840	T	C	2355.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:132,122:0.48:254
chr21	45650009	rs2236668	T	C	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:42,58:0.58:100
chr21	45651413	rs3746962	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	45655124	rs2070557	A	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr21	45656774	rs11558819	C	T	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:75,83:0.53:158
chr21	45658474	rs56124762	A	G	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.97;ReadPosRankSum=0.044;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:9,32:0.78:41
chr21	45671672	rs117469412	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr21	45681153	rs2070565	T	C	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-1.762;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr21	45708277	rs878081	C	T	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:203,165:0.45:368
chr21	45708355	rs41277546	C	T	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,78:0.58:135
chr21	45710107	rs1003854	T	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr21	45712357	rs5844181	AC	A	164.25	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr21	45712830	rs369566870	C	T	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr21	45712977	rs1800521	T	C	3525.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.32;ReadPosRankSum=-0.616;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:2,143:0.99:145
chr21	45714520	rs41296229	T	C	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr21	45717412	rs3746965	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=2.162;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr21	45717550	rs1133779	T	C	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr21	45723986	rs79934442	G	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.997;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr21	45724055	rs8134520	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr21	45724141	rs73231239	C	T	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:40,80:0.67:120
chr21	45725055	rs55730776	CA	TG	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.963;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.91;ReadPosRankSum=0.088;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr21	45725064	rs34642010	C	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.65;ReadPosRankSum=0.225;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr21	45725715	rs9975113	A	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:83,52:0.39:135
chr21	45725857	rs9977591	TC	CT	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;JOINED;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr21	45725910	rs67861360	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr21	45726480	rs2070568	T	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr21	45726499	.	T	TGGG	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=0.100;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr21	45726504	rs55966702	A	G	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.521;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr21	45726694	rs2070569	CC	GT	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	45726743	rs73231246	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr21	45726790	rs2070571	T	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	45733445	rs17004643	T	G	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:80,97:0.55:177
chr21	45733752	rs74979720	C	T	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-1.342;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:33,31:0.48:64
chr21	45733867	rs1057037	A	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:88,74:0.46:162
chr21	45733911	rs61750224	G	A	2285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-1.519;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:99,117:0.54:216
chr21	45741854	rs4818904	T	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr21	45742115	rs2277808	G	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=1.148;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr21	45742822	rs11088947	T	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:39,60:0.61:99
chr21	45743594	rs12482028	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr21	45746214	rs4818905	A	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr21	45746225	rs4818906	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr21	45750248	rs11552067	G	A	2505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-1.122;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:119,127:0.52:246
chr21	45757631	rs56242109	G	A	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr21	45758909	.	T	G	328	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=5;HapScore=2;MGOF=18;MMLQ=23;MQ=59.19;NF=20;NR=1;PP=328;QD=17.2748196451;SC=CTCCGCCCTCTCCCCGCCCCG;SbPval=0.43;Source=Platypus;TC=37;TCF=36;TCR=1;TR=21;WE=45758917;WS=45758899;set=Platypus	GT:AD:AF:DP	1/0:16,21:0.57:37
chr21	45759045	rs11870	C	T	4463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.398;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.794;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:227,223:0.50:450
chr21	45759197	rs73374031	G	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr21	45789011	rs34543751	A	AG	832.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	45815567	.	GTGTGGAGGGCTGTGGAGGATGTGGAGGGGTGTGGAGGGCTGTGGAGGGA	G	2532	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=3;HapScore=1;MGOF=28;MMLQ=25;MQ=60.06;NF=0;NR=14;PP=2532;QD=20;SC=GTGTGGAGGGGTGTGGAGGGC;SbPval=1.0;Source=Platypus;TC=18;TCF=0;TCR=18;TR=14;WE=45815623;WS=45815557;set=Platypus	GT:AD:AF:DP	1/1:4,14:0.78:18
chr21	45817620	rs1785436	T	C	1503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-3.214;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:61,77:0.56:138
chr21	45821529	rs9974831	T	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.058;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.675;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:106,26:0.20:132
chr21	45821794	rs1785437	C	T	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=4.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.734;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:289,93:0.24:382
chr21	45825975	rs1614122	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:135,52:0.28:187
chr21	45826434	rs1785454	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,27:0.36:76
chr21	45826462	rs1618355	C	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:87,54:0.38:141
chr21	45826744	rs1785439	A	G	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr21	45834025	rs915779	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.731;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:176,33:0.16:209
chr21	45837790	rs1785452	T	C	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.919;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:347,88:0.20:435
chr21	45844751	rs9978351	A	G	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr21	45845807	rs762428	C	T	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	45854925	rs41277556	G	A	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr21	45942111	rs233230	A	G	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	45959195	rs233316	G	A	6307.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:148,292:0.66:440
chr21	45959312	rs233317	C	T	16595.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr21	45959386	rs233318	G	A	11515.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:214,516:0.71:730
chr21	45959556	.	A	ATG	23577.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DP=816;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.078;QD=29.62;ReadPosRankSum=1.386;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:219,577:0.72:796
chr21	45959557	.	ATC	TGA	2934	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=24;MQ=59.75;NF=115;NR=148;PP=2934;QD=20;SC=ATGAAGAGGAATCCTCAGAGC;SbPval=0.49;Source=Platypus;TC=389;TCF=166;TCR=223;TR=263;WE=45959567;WS=45959547;set=Platypus	GT:AD:AF:DP	0/1:126,263:0.68:389
chr21	45959557	.	ATC	A	23574.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.000;DP=799;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=1.063;QD=29.65;ReadPosRankSum=1.536;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:220,575:0.72:795
chr21	45959918	rs233320	G	A	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:70,162:0.70:232
chr21	45970812	rs2329834	G	A	10826.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:184,486:0.73:670
chr21	45970993	rs233239	C	G	6377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.784;ClippingRankSum=0.000;DB;DP=909;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-1.958;QD=7.04;ReadPosRankSum=0.086;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:702,204:0.23:906
chr21	45971018	rs478947	C	G	6566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.356;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-2.353;QD=7.26;ReadPosRankSum=2.946;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:698,207:0.23:905
chr21	45971023	rs478967	G	T	6587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-2.377;QD=7.39;ReadPosRankSum=2.901;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:684,208:0.23:892
chr21	45971299	rs233240	T	C	1334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=61.03;MQRankSum=-1.496;QD=3.91;ReadPosRankSum=-3.157;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:247,94:0.28:341
chr21	45971380	rs6147532	A	AGTGAGTGAGTGT	2127.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr21	45971426	rs233241	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr21	45978499	rs377549	T	G	10157.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=44.55;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr21	45978503	rs435424	G	A	10421.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=44.35;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr21	45978587	rs448908	A	G	2798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-9.539;QD=6.55;ReadPosRankSum=0.808;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:334,93:0.22:427
chr21	45978592	rs452472	T	C	2788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-9.481;QD=6.67;ReadPosRankSum=1.002;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:326,92:0.22:418
chr21	46011468	rs465279	G	A	17298.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:2,642:1.00:644
chr21	46012240	rs543542	A	G	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.52;QD=25.17;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	46020473	rs113686885	C	CTCAT	10108.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.01;MQRankSum=0.684;QD=25.59;ReadPosRankSum=-1.717;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:2,393:0.99:395
chr21	46020527	rs1211103	C	T	14810.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.851;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;MQRankSum=6.283;QD=25.19;ReadPosRankSum=3.255;SOR=0.034;set=HC	GT:AD:AF:DP	1/1:5,583:0.99:588
chr21	46020655	rs36208679	CCTGCTGCGCCCCCAG	C	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.530;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=27.261;MLEAC=1;MLEAF=0.500;MQ=51.10;MQRankSum=-1.068;QD=4.22;ReadPosRankSum=-1.321;SOR=4.907;set=HC	GT:AD:AF:DP	0/1:55,11:0.17:66
chr21	46021088	rs388827	C	T	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.30;QD=30.66;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr21	46021179	rs363877	C	A	9646.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.90;QD=26.00;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr21	46021205	rs389167	C	T	15233.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=7.630;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=9.131;MLEAC=2;MLEAF=1.000;MQ=59.58;MQRankSum=5.264;QD=23.88;ReadPosRankSum=-0.859;SOR=0.021;set=HC	GT:AD:AF:DP	1/1:14,624:0.98:638
chr21	46021370	rs437149	T	C	37846.77	.	AC=2;AF=1.00;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	1/1:0,900:1.00:900
chr21	46021390	rs446817	G	C	36208.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,820:1.00:820
chr21	46021481	rs437334	T	C	31677.77	.	AC=2;AF=1.00;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	1/1:1,718:1.00:719
chr21	46021494	rs369720	A	G	33347.77	.	AC=2;AF=1.00;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	1/1:1,793:1.00:794
chr21	46021607	rs370092	A	G	36368.77	.	AC=2;AF=1.00;AN=2;DB;DP=1416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.92;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,1403:1.00:1403
chr21	46021759	rs659638	A	G	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr21	46032094	rs411254	A	G	14220.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,566:1.00:566
chr21	46047348	rs62220926	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.687;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-6.845;QD=0.66;ReadPosRankSum=-2.588;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:493,46:0.09:539
chr21	46047354	rs62220927	A	G	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.720;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-7.384;QD=0.93;ReadPosRankSum=-4.138;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:524,56:0.10:580
chr21	46047418	rs8126553	C	T	24426.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.635;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.75;MQRankSum=-0.475;QD=26.55;ReadPosRankSum=1.212;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:1,919:1.00:920
chr21	46047633	rs8127342	A	G	23716.77	.	AC=1;AF=0.500;AN=2;DB;DP=1449;set=Intersection	GT:AD:AF:DP	0/1:377,1061:0.74:1438
chr21	46047710	rs8131142	T	C	19123.77	.	AC=1;AF=0.500;AN=2;DB;DP=1160;set=Intersection	GT:AD:AF:DP	0/1:290,851:0.75:1141
chr21	46047857	rs9980129	C	T	24482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=1579;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.993;QD=16.58;ReadPosRankSum=1.953;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:376,1101:0.75:1477
chr21	46047925	rs9979457	G	T	20579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=1230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.948;QD=16.94;ReadPosRankSum=-2.851;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:290,925:0.76:1215
chr21	46047971	rs463217	T	C	19389.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr21	46048053	rs59484649	G	C	6265.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.12;QD=42.34;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr21	46048060	rs57944973	A	G	5779.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.61;QD=45.87;SOR=1.705;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr21	46057391	rs9306108	A	G	16345.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.28;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr21	46057391	.	AGT	GGA	2947	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=37;MMLQ=23;MQ=59.54;NF=93;NR=82;PP=2947;QD=20;SC=CTTGGCGGGTAGTCGACTGCC;SbPval=0.6;Source=Platypus;TC=186;TCF=97;TCR=89;TR=175;WE=46057401;WS=46057381;set=Platypus	GT:AD:AF:DP	1/1:11,175:0.94:186
chr21	46057393	rs2838602	T	A	16480.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.53;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr21	46057417	rs114653592	AG	CC	9941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.936;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.858;QD=29.59;ReadPosRankSum=-1.338;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:91,245:0.73:336
chr21	46057422	rs112205018	T	A	9733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.864;QD=29.41;ReadPosRankSum=-1.178;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:90,241:0.73:331
chr21	46057548	rs4818947	A	C	9885.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=30.61;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr21	46057590	rs9306109	A	T	10080.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:151,450:0.75:601
chr21	46057625	.	TGTCTGCTGTGTGCCC	T	4764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DP=953;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=13.083;QD=5.05;ReadPosRankSum=3.747;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:769,175:0.19:944
chr21	46057711	rs4818948	G	C	6057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=942;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=10.512;QD=6.50;ReadPosRankSum=0.121;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:734,198:0.21:932
chr21	46057720	rs4818949	A	C	6261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=924;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=9.747;QD=6.84;ReadPosRankSum=-1.128;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:707,208:0.23:915
chr21	46057806	rs4818950	G	A	14061.77	.	AC=1;AF=0.500;AN=2;DB;DP=915;set=Intersection	GT:AD:AF:DP	0/1:246,651:0.73:897
chr21	46057958	rs4818951	C	T	18154.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr21	46058060	rs13051517	C	T	2367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.84;MQRankSum=-1.958;QD=3.42;ReadPosRankSum=-1.818;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:519,174:0.25:693
chr21	46058229	rs1785474	A	T	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	46066764	rs4818952	C	T	24891.77	.	AC=2;AF=1.00;AN=2;DB;DP=948;set=Intersection	GT:AD:AF:DP	1/1:1,937:1.00:938
chr21	46067180	rs462007	C	T	19106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=1186;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.540;QD=16.47;ReadPosRankSum=1.058;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:278,882:0.76:1160
chr21	46074104	rs2073437	T	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr21	46074202	rs9984726	A	G	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr21	46077812	rs2838617	A	G	12730.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr21	46077946	rs9306111	A	G	27174.77	.	AC=2;AF=1.00;AN=2;DB;DP=1046;set=Intersection	GT:AD:AF:DP	1/1:2,1034:1.00:1036
chr21	46078220	rs9306112	T	C	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	46086377	rs2838622	A	G	4277.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr21	46086718	rs7275281	GA	CG	25305.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=986;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.78;ReadPosRankSum=-0.784;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:2,943:1.00:945
chr21	46086757	rs7275298	GC	AT	24352.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr21	46117792	rs34302939	G	A	2975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;ClippingRankSum=0.000;DB;DP=964;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-2.295;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:731,224:0.23:955
chr21	46117823	rs61745911	G	A	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=813;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.755;QD=2.80;ReadPosRankSum=1.472;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:628,178:0.22:806
chr21	46191256	rs4818975	C	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.340;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr21	46191270	rs11569	C	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	46197450	rs2294157	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr21	46221494	rs28728356	G	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	46226786	rs1051331	A	G	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr21	46237814	.	G	GCGGGGCGCGCCGCCGAGCGCAGCCGGGCGGGGGAGGGGAGCGGCGCGGCCGGACGGGAGCGGGGGAGGGGCGGGGGCGCGGGCGGCGCCGCAGGCCTGGGCGCGGGTCCCCGTGGGCGCCGCCGTCTCCAAGGGCCGCAGGAGCGGCGCGCGGCGGCGGAGGCGCC	2043.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.503;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=55.699;MLEAC=2;MLEAF=1.000;MQ=58.28;MQRankSum=-0.291;QD=81.75;ReadPosRankSum=-0.612;SOR=3.892;set=HC	GT:AD:AF:DP	1/1:11,14:0.56:25
chr21	46271452	rs235314	C	T	7822.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.44;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr21	46271452	.	CGTGCACCT	TGTGCACCC,TGTGCACCT	1337	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.67;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=14,52;NR=13,58;PP=185,1337;QD=8.83214351342;SC=GGCTGCGGAGCGTGCACCTCA;SbPval=0.42;Source=Platypus;TC=110;TCF=52;TCR=58;TR=27,110;WE=46271468;WS=46271442;set=Platypus	GT:AF:DP	0/1:0.25:110
chr21	46271460	rs2236442	T	C	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.918;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:205,63:0.24:268
chr21	46271660	rs235315	A	G	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	46275047	rs235317	A	C	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr21	46281314	rs235276	T	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr21	46293692	rs235373	T	C	2752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.481;QD=29.28;ReadPosRankSum=1.244;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:16,78:0.83:94
chr21	46293698	rs11388069	G	GC	2555.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.480;QD=35.01;ReadPosRankSum=1.691;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:12,61:0.84:73
chr21	46306472	rs235375	C	G	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:18,60:0.77:78
chr21	46309304	.	A	C	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;ClippingRankSum=0.000;DP=526;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.944;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:396,125:0.24:521
chr21	46311813	rs235326	A	G	11087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=-1.152;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:186,515:0.73:701
chr21	46313442	rs2230529	G	T	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:45,155:0.78:200
chr21	46314907	rs235330	T	A	10635.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr21	46315022	rs2838725	C	T	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:29,119:0.80:148
chr21	46315033	rs144791273	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.398;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:102,23:0.18:125
chr21	46315091	rs2838726	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr21	46320313	rs2230528	C	T	6931.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:108,320:0.75:428
chr21	46320403	rs5030670	C	T	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr21	46321659	rs55865320	C	A	13261.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr21	46328026	rs3746973	G	A	5059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.33;ReadPosRankSum=-0.426;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:44,232:0.84:276
chr21	46328099	rs760462	T	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	46330183	rs34580582	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.214;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:184,46:0.20:230
chr21	46330667	rs5030667	G	A	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:272,94:0.26:366
chr21	46354055	rs9974172	A	G	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	46389017	rs12106383	C	A	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	46389189	rs12106389	C	T	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	46393090	rs3827260	C	T	8332.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr21	46554604	rs11369444	A	AT	2672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.053;QD=5.90;ReadPosRankSum=1.598;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:225,228:0.50:453
chr21	46572572	rs420085	A	G	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr21	46624434	rs3215898	GA	G	1164.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr21	46624807	rs2838812	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr21	46640676	rs57020111	T	C	5130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.87;ReadPosRankSum=1.020;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:40,121:0.75:161
chr21	46640686	rs59804232	G	T	5652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.44;ReadPosRankSum=-0.627;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:42,150:0.78:192
chr21	46641968	rs1051367	G	A	1504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.131;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:639,146:0.19:785
chr21	46642162	rs12627516	A	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:7,48:0.87:55
chr21	46685560	rs72316840	ATCACAGAGGTTCCAGAGTCAGGGAGAACTGGCG	A	969.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr21	46685592	rs1006887	C	G	429.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.921;QD=8.60;ReadPosRankSum=-0.797;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr21	46698256	rs914215	T	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	46702506	rs2236449	C	T	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	46702822	rs74961332	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:165,46:0.22:211
chr21	46702893	rs74483637	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:103,22:0.18:125
chr21	46703223	.	C	CG	130.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.394;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr21	46705345	rs2297284	G	A	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:52,117:0.69:169
chr21	46705621	rs2297285	G	A	10340.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:205,470:0.70:675
chr21	46825202	.	G	GCTGCGGGGCTGCGGGGGTCCCGGGGGTCCCGGGGGTCGGCTGGGTCCTGCGGGGGTC	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=4.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-1.069;SOR=1.970;set=HC	GT:AD:AF:DP	0/1:47,5:0.10:52
chr21	46825214	rs113272297	G	C	1766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.00;ReadPosRankSum=4.617;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:12,45:0.79:57
chr21	46825223	rs60499034	G	C	1724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.36;ReadPosRankSum=3.429;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:10,45:0.82:55
chr21	46875564	rs914230	T	C	25193.77	.	AC=2;AF=1.00;AN=2;DB;DP=984;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,959:1.00:959
chr21	46909647	rs117351414	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,9:0.21:43
chr21	46924425	.	CGGCCCCCCAGGCCCCCCA	C,CGGCCCCCCA	4990.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.90;QD=38.99;SOR=0.724;set=HC	GT:AD:AF:DP	1/2:0,89,39:0.70,0.30:128
chr21	46935077	rs11284347	TA	T	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-2.390;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr21	46951556	rs12659	A	G	18005.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:2,676:1.00:678
chr21	46952094	rs914231	T	C	10440.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr21	46954343	rs2330184	T	C	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:174,58:0.25:232
chr21	46957794	rs1051266	T	C	12505.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,497:1.00:497
chr21	46957916	rs1131596	G	A	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	46957982	rs13052294	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	47320377	rs2075891	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.801;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr21	47320425	rs7281638	T	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.593;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr21	47320805	rs1547240	G	A	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:13,48:0.79:61
chr21	47329352	rs2277812	T	C	10045.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr21	47350796	rs11089031	G	A	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:23,136:0.86:159
chr21	47401760	rs7671	C	G	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=3.168;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:68,15:0.18:83
chr21	47404397	rs3746993	A	G	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.102;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:322,101:0.24:423
chr21	47406612	rs754507	C	A	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=2.661;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:65,19:0.23:84
chr21	47407362	rs62215498	C	T	4169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DB;DP=1217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.883;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:893,300:0.25:1193
chr21	47409113	rs8129814	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:64,23:0.26:87
chr21	47409503	rs2277814	A	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:95,40:0.30:135
chr21	47410378	.	GAATGGGGC	G	2077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DP=595;ExcessHet=3.0103;FS=9.303;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=3.118;QD=3.85;ReadPosRankSum=0.424;SOR=1.521;set=HC	GT:AD:AF:DP	0/1:455,85:0.16:540
chr21	47410388	.	AGATGGGGAGGGACGGAGTGGACGGCGTGAAGGTGACC	A	2116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.297;ClippingRankSum=0.000;DP=502;ExcessHet=3.0103;FS=9.145;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.044;QD=4.28;ReadPosRankSum=0.304;SOR=1.499;set=HC	GT:AD:AF:DP	0/1:413,81:0.16:494
chr21	47410626	rs1980981	T	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr21	47410931	rs1980982	T	C	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.652;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:425,109:0.20:534
chr21	47412524	rs760439	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr21	47412751	rs2850173	A	C	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr21	47417206	rs11701583	A	G	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	47417303	rs2839077	T	C	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.516;QD=2.29;ReadPosRankSum=2.784;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:367,99:0.21:466
chr21	47417415	rs2276254	C	A	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr21	47417432	rs3216137	A	AG	5669.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr21	47417975	rs3737437	A	G	3447.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.133;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.98;ReadPosRankSum=-0.746;SOR=0.506;set=HC	GT:AD:AF:DP	1/1:1,137:0.99:138
chr21	47418728	rs141212516	C	CT	2691.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	47419520	rs75434097	G	A	2849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.15;ReadPosRankSum=1.062;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:29,128:0.82:157
chr21	47419697	rs8131101	C	T	10701.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr21	47419706	rs11464071	C	CG	5795.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:4,197:0.98:201
chr21	47419747	rs8131632	A	G	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr21	47419770	rs73908116	G	A	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=46.28;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	47419780	rs8130255	G	A	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.56;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	47419794	rs8126900	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=48.61;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	47419804	rs8131227	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=46.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	47420565	rs142824931	AGGAGGGCGGCCGGGGAG	A	12599.73	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr21	47420726	rs7276098	C	G	10057.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr21	47420761	rs7283989	G	A	7723.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=1.661;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr21	47420769	rs7276782	A	G	7216.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.26;SOR=1.687;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr21	47421315	rs11701124	C	T	8974.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr21	47421793	rs8132377	C	T	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.220;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:166,53:0.24:219
chr21	47421797	rs8131313	G	A	1802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.132;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:183,60:0.25:243
chr21	47421864	rs8132521	C	T	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.886;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:397,107:0.21:504
chr21	47422412	rs35796750	C	T	27108.77	.	AC=2;AF=1.00;AN=2;DB;DP=1051;set=Intersection	GT:AD:AF:DP	1/1:0,1038:1.00:1038
chr21	47422639	rs2236485	A	G	5324.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.96;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr21	47422639	.	ACCCGG	GCCCGA,GCCCGG	1013	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.65;FR=0.5000,0.5000;HP=5;HapScore=1;MGOF=10;MMLQ=23;MQ=59.22;NF=5,25;NR=19,69;PP=297,1013;QD=14.6028281193;SC=GCATGGGGCCACCCGGGCAGT;SbPval=0.77;Source=Platypus;TC=95;TCF=25;TCR=70;TR=24,94;WE=47422652;WS=47422629;set=Platypus	GT:AF:DP	0/1:0.25:95
chr21	47422644	rs2236486	G	A	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.409;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=4.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=2.074;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:109,42:0.28:151
chr21	47422679	rs2236487	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr21	47422712	rs2236488	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr21	47423133	rs2236489	C	G	6894.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr21	47423233	rs59769541	C	T	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:94,48:0.34:142
chr21	47423509	rs13051496	C	T	8023.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:124,363:0.75:487
chr21	47538050	rs7279535	G	A	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.910;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr21	47538691	rs9917540	G	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:197,88:0.31:285
chr21	47538960	rs2839110	G	A	1707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-1.692;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:257,110:0.30:367
chr21	47539790	rs3737362	A	G	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.055;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:371,73:0.16:444
chr21	47540349	rs79433633	C	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.592;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr21	47540421	rs73159701	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.262;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr21	47540842	rs55964853	G	C	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:186,64:0.26:250
chr21	47541302	rs1076850	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr21	47541553	rs1077182	A	G	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.499;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=2.36;ReadPosRankSum=1.827;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:253,69:0.21:322
chr21	47541986	rs9976026	T	C	1413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.241;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:279,98:0.26:377
chr21	47542378	rs17272651	C	T	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.588;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-1.032;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:250,87:0.26:337
chr21	47542634	rs17272671	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr21	47542654	rs5844253	G	GC	4197.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr21	47542779	rs17357592	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:233,109:0.32:342
chr21	47542861	rs915786	A	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:101,53:0.34:154
chr21	47544451	rs141308738	GCC	G	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=6.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=2.161;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr21	47544528	rs79205686	G	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:134,71:0.35:205
chr21	47544662	rs55933135	A	G	2039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=1.496;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:403,148:0.27:551
chr21	47545155	rs2839113	A	G	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.228;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:148,55:0.27:203
chr21	47545310	rs16978870	T	C	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.870;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:502,125:0.20:627
chr21	47546244	rs13050660	T	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=0.308;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr21	47546263	rs79666692	C	A	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.354;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=1.865;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr21	47546334	rs17272947	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=4.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.18;ReadPosRankSum=0.757;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:198,28:0.12:226
chr21	47546382	rs16978878	C	A	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.083;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-2.516;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:423,52:0.11:475
chr21	47546390	rs138363207	T	TGGCCCGGCCCGGCCC	1183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.652;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=4.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-2.923;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:436,54:0.11:490
chr21	47552130	rs9977394	A	G	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=1.471;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:473,107:0.18:580
chr21	47552385	rs6652	C	T	2768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.647;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:713,218:0.23:931
chr21	47552582	rs3087667	T	C	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=1.055;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:134,36:0.21:170
chr21	47552585	rs1043962	A	G	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=1.166;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:129,34:0.21:163
chr21	47556793	rs12774	C	T	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:298,108:0.27:406
chr21	47556809	rs1047209	C	T	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=2.386;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:295,102:0.26:397
chr21	47557074	rs9284510	A	G	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr21	47558473	rs1047179	G	C	8212.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr21	47558586	rs60525628	A	G	9146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.30;ReadPosRankSum=-2.616;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:101,234:0.70:335
chr21	47558591	rs62214031	A	G	9210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.83;ReadPosRankSum=-2.939;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:102,229:0.69:331
chr21	47558994	rs1980983	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr21	47566090	rs80225292	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:10,45:0.82:55
chr21	47566345	rs3746999	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr21	47570266	rs55761347	G	A	8246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.33;ReadPosRankSum=0.469;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:82,368:0.82:450
chr21	47571383	rs34248722	C	CA	2220.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	47575237	rs62214040	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:81,33:0.29:114
chr21	47581212	rs118185461	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.426;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:72,19:0.21:91
chr21	47581734	rs3747001	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr21	47588646	rs11909543	G	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr21	47602719	rs55819909	G	A	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-3.129;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:170,74:0.30:244
chr21	47608580	rs2968	G	A	8451.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr21	47609510	rs9717	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47609677	rs914247	A	G	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr21	47611285	rs73144744	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.741;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr21	47611799	rs17293705	G	A	4812.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:98,224:0.70:322
chr21	47612466	rs2187120	A	G	9643.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=3.599;MLEAC=2;MLEAF=1.000;MQ=56.22;MQRankSum=-0.592;QD=45.28;ReadPosRankSum=1.465;SOR=0.664;set=HC	GT:AD:AF:DP	1/1:1,212:1.00:213
chr21	47612471	rs2187121	T	C	9815.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.607;MLEAC=2;MLEAF=1.000;MQ=56.00;MQRankSum=-0.617;QD=45.03;ReadPosRankSum=1.709;SOR=0.670;set=HC	GT:AD:AF:DP	1/1:1,217:1.00:218
chr21	47612512	rs146297977	C	CTG	11167.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr21	47614443	rs2254522	A	G	4011.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:61,183:0.75:244
chr21	47614469	rs2254524	A	C	8730.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr21	47614660	rs2277824	G	T	5245.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:66,242:0.79:308
chr21	47615477	rs58875826	AAAAC	A	6186.73	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:75,157:0.68:232
chr21	47616071	rs7282841	G	C	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=1.627;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr21	47616080	rs2839140	G	A	7163.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.70;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr21	47625658	rs2839143	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:51,14:0.22:65
chr21	47626728	rs16978976	C	T	2578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=883;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.212;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:668,206:0.24:874
chr21	47632995	rs2839151	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-1.249;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr21	47633789	rs9974665	C	G	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.164;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:502,131:0.21:633
chr21	47635176	rs34115287	T	C	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.008;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:85,28:0.25:113
chr21	47635302	rs5844259	T	TC	3133.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.64;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	47635627	rs9980968	C	G	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-1.702;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:287,93:0.24:380
chr21	47635713	rs11701729	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:245,95:0.28:340
chr21	47635856	rs2839153	C	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=0.584;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr21	47639492	rs2277826	C	G	10553.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr21	47641700	rs2839157	G	T	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	47641794	rs2839158	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.552;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=0.737;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:148,37:0.20:185
chr21	47642609	rs11558754	G	A	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.520;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:374,132:0.26:506
chr21	47647618	.	G	GA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DP=403;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.36;ReadPosRankSum=-2.400;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:284,59:0.17:343
chr21	47648729	.	CCCCGCCCCT	C,CCCCGCCCCTCCCGCCCCTCCCGCCCCTCCCGCCCCTCCCGCCCCTCCCGCCCCT	695.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.395;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=13.793;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.77;MQRankSum=0.513;QD=16.57;ReadPosRankSum=1.452;SOR=3.981;set=HC	GT:AD:AF:DP	1/2:8,18,16:0.43,0.38:42
chr21	47656712	rs2839166	T	C	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.085;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:107,32:0.23:139
chr21	47662899	.	C	CA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.612;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.571;QD=1.53;ReadPosRankSum=-1.102;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr21	47676948	rs17176611	A	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:129,36:0.22:165
chr21	47686152	rs2839182	C	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.286;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr21	47686174	rs4818831	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.265;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr21	47687144	rs2839183	G	A	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr21	47697650	rs17182664	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr21	47699856	rs2839195	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr21	47700498	rs4438580	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=4.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.699;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:307,68:0.18:375
chr21	47703455	.	C	CA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.063;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.047;QD=0.88;ReadPosRankSum=2.119;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:99,27:0.21:126
chr21	47703649	rs11702450	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:80,33:0.29:113
chr21	47704896	rs9975588	G	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-1.336;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:160,51:0.24:211
chr21	47717616	rs8651	G	A	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.895;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:192,61:0.24:253
chr21	47722530	rs4365550	G	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.895;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:150,29:0.16:179
chr21	47731495	rs13049522	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr21	47734842	rs117095783	A	G	3109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-0.333;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:435,106:0.20:541
chr21	47734844	rs114869542	G	A	3109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.272;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:438,106:0.19:544
chr21	47744037	rs3842460	CG	C	83.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:35,8:0.19:43
chr21	47766139	rs9982233	T	C	4187.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr21	47766650	rs2839217	G	A	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.963;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.686;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:161,28:0.15:189
chr21	47767295	rs75756987	G	C	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=0.323;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:15,40:0.73:55
chr21	47769134	rs35210219	A	T	4032.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:64,187:0.75:251
chr21	47771565	rs2839219	A	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.051;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr21	47773103	rs2249057	C	A	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.042;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:223,56:0.20:279
chr21	47773177	rs2249060	C	T	3891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=1.930;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:58,181:0.76:239
chr21	47777063	rs2839223	G	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=1.126;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:75,22:0.23:97
chr21	47783796	rs8131546	T	C	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.880;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:180,62:0.26:242
chr21	47786449	rs9637173	T	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.283;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:123,30:0.20:153
chr21	47786494	rs2839226	C	T	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=0.408;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:217,70:0.24:287
chr21	47786524	rs2839227	A	G	6842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=-1.169;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:99,318:0.76:417
chr21	47786817	rs2839228	C	G	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=4.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.961;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:157,55:0.26:212
chr21	47787002	rs6518289	T	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.396;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:114,29:0.20:143
chr21	47801504	rs34950974	G	A	232.98	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr21	47805663	rs2073378	C	G	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:28,100:0.78:128
chr21	47808617	rs7279052	C	T	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:62,103:0.62:165
chr21	47808679	rs7279204	C	T	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:60,110:0.65:170
chr21	47811272	rs3737438	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr21	47821588	rs6518291	A	G	9068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-0.383;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:141,423:0.75:564
chr21	47832012	rs71318074	A	AT	1112.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:45,64:0.59:109
chr21	47836653	rs2070425	C	T	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-1.949;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:246,84:0.25:330
chr21	47850405	rs2839257	C	T	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr21	47850484	rs2070426	G	C	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr21	47851753	rs2073376	A	G	8009.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr21	47851796	rs9983522	G	A	6447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=-0.083;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:83,294:0.78:377
chr21	47852151	rs5844270	A	AG	598.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;MQ=60.67;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	47855876	rs17371795	A	G	10584.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:125,491:0.80:616
chr21	47856106	rs2236616	C	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-1.317;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr21	47860764	rs2839260	T	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.228;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr21	47862624	rs2839262	A	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-2.038;SOR=1.424;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr21	47864560	rs143709505	CTTT	C	563.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=0.466;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:52,28:0.35:80
chr21	47910659	rs9976530	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.098;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:67,14:0.17:81
chr21	47917047	rs11315869	CT	C	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.959;QD=1.46;ReadPosRankSum=-1.737;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:213,56:0.21:269
chr21	47918662	rs7283507	C	G	2423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-1.760;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:477,168:0.26:645
chr21	47957332	rs2070432	G	A	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.545;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:250,86:0.26:336
chr21	47959692	rs1008548	G	A	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.516;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:64,25:0.28:89
chr21	47959698	rs1008549	C	T	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.455;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:71,27:0.28:98
chr21	47961711	rs2070435	G	A	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.099;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:288,89:0.24:377
chr21	47966977	rs16979358	C	T	5875.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:78,263:0.77:341
chr21	47970581	rs2255397	G	A	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.413;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:277,84:0.23:361
chr21	47971539	rs2255526	G	A	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=-0.941;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:158,54:0.25:212
chr21	47974582	rs1107065	A	G	15867.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr21	47978321	rs34920477	G	GC	8658.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr21	47980570	rs2070429	A	G	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-2.071;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:304,76:0.20:380
chr21	47983657	rs762253	G	A	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	47986633	rs3819044	C	A	9997.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr21	47987547	rs8127941	C	T	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.045;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:198,61:0.24:259
chr21	48022230	rs1051169	C	G	5454.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr21	48022375	rs2186358	C	A	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr21	48063476	rs10854485	C	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	48078611	rs2070436	G	A	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.419;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:265,78:0.23:343
chr21	48081914	.	A	ATGGGGCGCGCAGGAGGGGG	903.73	.	AC=1;AF=0.500;AN=2;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;QD=26.58;SOR=3.716;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr22	16157496	.	A	G	49.28	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.03;QD=16.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	16157603	rs370790235	G	C	143.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=20.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	16157622	rs374192809	G	C	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=19.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	16157648	rs373638938	CCTT	C	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	16157827	.	C	G	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.889;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=0.303;QD=11.37;ReadPosRankSum=1.531;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:30,42:0.58:72
chr22	16157913	.	T	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.27;MQRankSum=-4.572;QD=1.22;ReadPosRankSum=3.149;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr22	16157951	.	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=45.20;MQRankSum=-3.782;QD=12.05;ReadPosRankSum=-0.576;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr22	16157958	.	G	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.64;MQRankSum=-2.189;QD=16.54;ReadPosRankSum=-1.068;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr22	16157967	.	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.09;MQRankSum=-1.645;QD=26.15;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr22	17055569	rs3729688	T	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	17063359	rs2006108	A	G	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.80;QD=27.93;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	17072483	rs2236639	A	G	17629.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:1,679:1.00:680
chr22	17073066	rs5747988	A	G	11425.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr22	17177813	rs188002045	A	C	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.83;QD=22.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	17178601	rs116224412	G	A	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.59;QD=24.64;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	17326914	rs165927	G	A	6781.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr22	17327068	rs165588	A	G	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	17446991	rs4819925	C	T	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	17449076	rs5748768	C	G	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	17488727	rs5748800	A	C	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	17488823	rs11378060	C	CG	3954.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	17565888	rs13053694	C	A	17453.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,659:1.00:659
chr22	17565932	rs917864	T	C	22902.77	.	AC=2;AF=1.00;AN=2;DB;DP=878;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,869:1.00:869
chr22	17565974	rs917865	G	C	16693.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr22	17566206	rs2270241	G	T	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	17566229	rs2270242	T	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	17582776	rs17807076	C	T	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	17586471	rs2241046	C	T	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	17586583	rs2241047	C	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	17586595	rs34484815	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	17586609	rs144979983	GT	G	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr22	17586614	rs35078252	G	C	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	17586631	rs4819959	G	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	17586715	rs56736183	ATCAC	A	5084.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	17589209	rs879577	C	T	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	17589567	rs879575	C	T	18025.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,696:1.00:696
chr22	17590269	rs4819555	C	T	17686.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,691:1.00:691
chr22	17590744	rs1468488	T	C	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	17600148	rs9605220	A	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	17601466	rs75243280	T	C	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	17602839	rs5992629	G	A	6373.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr22	17603477	rs5748871	A	G	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	17619292	rs740422	C	T	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	17619716	rs741139	A	G	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	17623880	rs34058953	G	GC	3658.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	17640045	rs7287672	G	A	3716.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.401;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.225;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.63;ReadPosRankSum=-1.104;SOR=0.402;set=HC	GT:AD:AF:DP	1/1:1,144:0.99:145
chr22	17640176	.	G	GC	1418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.950;QD=8.87;ReadPosRankSum=2.092;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:83,77:0.48:160
chr22	17640399	rs148919630	G	GGGC	1622.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;QD=42.70;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	17669151	rs2231496	C	T	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	17956759	rs4819593	C	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	17978600	rs7284169	G	C	4816.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	18021505	rs2268776	T	C	8149.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,317:0.99:319
chr22	18027817	rs149314645	CTT	C	888.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.408;QD=17.43;ReadPosRankSum=0.646;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:11,40:0.78:51
chr22	18030096	.	TAA	T,TA	2063.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=0.779;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.07;MQRankSum=2.404;QD=11.66;ReadPosRankSum=1.260;SOR=0.569;set=HC	GT:AD:AF:DP	1/2:28,63,86:0.36,0.49:177
chr22	18075566	rs150344720	CT	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=10.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.419;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:47,31:0.40:78
chr22	18084001	rs5747254	T	G	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	18171650	rs5013026	C	T	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	18178859	rs2257083	C	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	18209613	rs4488761	A	G	6906.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr22	18218464	rs181382	T	C	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	18218475	rs181383	C	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	18222263	rs181390	A	G	9146.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr22	18233000	rs181405	G	A	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	18257138	rs443912	T	G	7372.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr22	18370066	rs4819472	C	A	6090.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr22	18609065	rs2234329	G	T	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	18655860	rs4819484	G	A	13089.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.40;QD=25.82;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,507:1.00:507
chr22	18896169	rs426065	C	T	6405.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr22	18896189	rs425576	T	C	7732.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr22	18897416	rs436638	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	18898289	rs441862	G	C	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	18899016	rs428224	G	A	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	18900669	rs383964	A	G	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	18900750	rs372055	G	A	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	18901004	rs450046	C	T	11308.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr22	18901090	rs385440	A	G	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	18904414	rs455072	A	G	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr22	18904606	rs375115	T	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	18905964	rs2904552	C	T	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	18906839	rs3970551	A	G	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	18907124	rs1076466	G	A	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	18910284	rs5844366	AC	A	5485.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	18910301	rs2008904	A	G	8323.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=47.03;SOR=1.596;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	18910307	rs2008903	G	A	8600.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=42.37;SOR=1.419;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	18910355	rs5747933	G	T	12113.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr22	18910450	rs3216765	CA	C	22914.73	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr22	18910545	rs2277834	C	T	11727.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr22	18910756	rs2008878	C	G	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.289;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	18910825	rs201928442	TC	T	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	18910828	rs1807172	T	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	18912678	rs4819756	A	G	11520.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr22	18923745	rs2008720	G	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	18923848	rs71299315	T	TCCCGC	971.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.340;QD=23.70;ReadPosRankSum=-0.273;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr22	19077049	rs2800960	C	T	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	19122498	rs2240110	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	19163577	rs35359423	C	CAT	2675.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	19164835	rs3213491	A	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	19172006	rs1018764	T	C	11874.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,467:1.00:467
chr22	19187375	rs9605957	G	A	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	19189003	rs11386977	A	AC	8064.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr22	19196502	rs1060376	G	A	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	19197896	rs698423	T	C	6640.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr22	19217613	rs2800963	C	T	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.05;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	19217617	rs113338080	C	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	19217621	rs9306213	G	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	19278973	rs11704250	G	C	269.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.98;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	19279194	rs3747060	G	T	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	19318622	rs1210690	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	19379555	rs45498292	T	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	19384589	rs11914109	C	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	19384604	rs143924115	C	T	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	19419005	.	G	GGCC	13687.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.556;ClippingRankSum=0.000;DP=814;ExcessHet=3.0103;FS=1.369;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.508;QD=22.66;ReadPosRankSum=1.471;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:29,575:0.95:604
chr22	19419093	rs8140291	A	G	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	19420109	rs1128399	T	C	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	19420306	rs12165902	C	G	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	19420959	rs12168943	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	19423250	rs7575	G	A	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr22	19438362	rs5748208	A	G	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	19462466	rs5746744	C	G	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	19467462	rs13447182	G	T	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	19467652	rs5748232	T	C	15049.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr22	19470493	.	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.771;QD=0.47;ReadPosRankSum=-0.795;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr22	19471609	rs737858	A	G	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	19486493	rs13447228	G	A	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	19702168	.	C	CTGCCCGCG	7163.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;MQRankSum=0.235;QD=27.34;ReadPosRankSum=-0.220;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:2,260:0.99:262
chr22	19711765	rs142352780	C	T	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	19712094	rs1059196	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	19794366	rs737860	C	A	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	19868218	rs1139793	A	G	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	19882492	rs35599379	CA	C	507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.659;QD=8.46;ReadPosRankSum=1.960;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:15,45:0.75:60
chr22	19882630	rs5993856	G	A	7633.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.28;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr22	19882984	rs5992495	T	G	13698.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr22	19885548	rs12169091	G	T	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	19886797	rs8142006	G	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	19898659	rs149796774	GC	G	1029.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	19898837	rs885987	A	G	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr22	19905802	rs756661	G	A	4648.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	19906306	rs3747067	C	G	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	19906511	rs11541479	G	A	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr22	19906693	rs146802029	AAC	A	362.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	19907118	rs5748470	G	A	8500.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=0.437;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:2,323:0.99:325
chr22	19907192	rs5748471	A	G	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	19950235	rs4633	C	T	14311.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,549:1.00:549
chr22	19951271	rs4680	G	A	13378.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.421;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.28;ReadPosRankSum=0.301;SOR=0.351;set=HC	GT:AD:AF:DP	1/1:1,508:1.00:509
chr22	19956262	rs362204	G	GC	2708.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:3,110:0.97:113
chr22	19958669	rs165849	G	A	12461.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,480:1.00:480
chr22	19958898	rs141124548	GGTTA	G	6075.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	19959366	rs165824	G	A	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr22	19959473	rs165815	C	T	11617.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.20;ReadPosRankSum=1.383;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:3,458:0.99:461
chr22	19959955	rs2073744	A	G	11816.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:2,442:1.00:444
chr22	19960188	rs2518823	T	C	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	19964418	rs2240718	T	G	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr22	19969075	rs2073747	A	G	7681.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr22	20096314	rs146291827	G	GCGCCTACCTTGCCAGACCCTGGGCA	1772.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=88.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	20100596	rs1633445	T	C	13402.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.683;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.43;ReadPosRankSum=0.852;SOR=0.195;set=HC	GT:AD:AF:DP	1/1:2,525:1.00:527
chr22	20104301	rs395446	T	C	13454.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,514:1.00:514
chr22	20110246	rs55662364	C	CTGTGTGTG	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	20128425	.	G	C	10795.77	.	AC=2;AF=1.00;AN=2;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr22	20255020	rs854929	T	C	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr22	20378593	rs79418534	A	G	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.49;QD=24.15;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	20378615	rs72127903	CGGGATCCGGGGGT	C	348.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.16;QD=38.75;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	20378965	rs55698413	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.73;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	20379008	rs62218641	G	A	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.01;QD=21.69;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	20379066	rs56006201	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.59;QD=23.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	20385706	rs79640249	G	T	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.20;QD=24.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	20385739	rs146242498	TTGTC	T	6172.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.72;QD=44.73;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	20394502	rs201085493	C	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.37;QD=22.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	20394526	rs201289136	C	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.66;QD=23.07;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	20743771	rs361766	C	T	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	20745201	rs362125	A	G	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	20749051	rs112010963	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.204;QD=0.28;ReadPosRankSum=1.729;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:126,27:0.18:153
chr22	20753861	.	C	CT	37	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.9999;HP=13;HapScore=2;MGOF=2;MMLQ=28;MQ=56.34;NF=0;NR=3;PP=37;QD=14.0;SC=TTTACATGTCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=3;WE=20753869;WS=20753851;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr22	20779604	rs7286419	T	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	20779768	rs874101	G	C	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	20779946	rs759612	C	G	2035.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=44.26;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	20779947	rs759611	G	C	2035.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=44.26;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	20779973	rs5844418	C	CG	988.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	20780024	rs5844420	G	GC	890.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.49;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	20780029	rs370015834	G	GC	931.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.59;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	20780031	rs2329378	G	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	20780091	rs759610	C	G	3674.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.37;ReadPosRankSum=0.081;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:2,119:0.98:121
chr22	20780097	rs759609	G	C	5745.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.25;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	20783485	rs5997411	C	A	33855.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.578;ClippingRankSum=0.000;DB;DP=1321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=1.991;SOR=0.274;set=HC	GT:AD:AF:DP	1/1:2,1311:1.00:1313
chr22	20791821	rs9619753	G	A	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	20811930	rs362087	C	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	20843885	rs165613	T	G	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	20891259	rs2269830	C	A	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	20891545	rs4821915	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	20891568	rs2269831	G	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	20920813	rs71769813	ACAG	A	850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.865;QD=1.62;ReadPosRankSum=1.240;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:468,58:0.11:526
chr22	21034809	rs28668558	G	A	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=25.57;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	21084208	rs139857256	G	A	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	21134552	.	G	A	1838.77	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	21147581	.	T	TA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=1.056;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr22	21174921	.	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.58;ReadPosRankSum=-1.297;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:92,19:0.17:111
chr22	21213380	rs1061063	C	T	11112.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr22	21213416	rs1061064	A	G	18369.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.559;ClippingRankSum=0.000;DB;DP=706;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.24;ReadPosRankSum=0.057;SOR=0.335;set=HC	GT:AD:AF:DP	1/1:1,699:1.00:700
chr22	21311531	rs81027	C	T	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:2,135:0.99:137
chr22	21311721	rs178251	T	G	16445.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,632:1.00:632
chr22	21322325	rs11334069	TC	T	10420.73	.	AC=2;AF=1.00;AN=2;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=29.60;SOR=1.062;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr22	21322351	rs178254	T	C	8121.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.211;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=3.896;MLEAC=2;MLEAF=1.000;MQ=60.03;MQRankSum=0.114;QD=26.28;ReadPosRankSum=0.415;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:1,308:1.00:309
chr22	21322376	rs74610147	T	G	8276.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=44.74;SOR=1.622;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	21322377	rs75810376	C	G	8276.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=45.48;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr22	21322380	rs71317868	A	G	8026.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=44.84;SOR=1.663;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	21322383	rs432390	A	G	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=45.35;SOR=1.623;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	21327834	rs178265	C	G	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr22	21329123	rs733455	A	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	21331043	rs178269	A	T	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr22	21331918	rs178275	C	G	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	21331950	rs178276	C	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	21332122	rs178277	G	A	11333.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr22	21334924	rs105034	G	C	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	21335259	rs178278	C	A	10850.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:1,424:1.00:425
chr22	21337266	rs178280	G	A	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	21337415	rs178281	C	G	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	21340088	rs178287	T	C	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr22	21341677	rs58365624	C	CA	1228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=0.740;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:24,88:0.79:112
chr22	21342169	rs178289	G	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	21343982	.	TGGGGAGCCAGGGCGCAGGTAGAGGAGGTGAGGGGCAC	T	2966	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=5;HapScore=1;MGOF=4;MMLQ=24;MQ=64.73;NF=1;NR=82;PP=2966;QD=20;SC=GTGAGGGGCGTGGGGAGCCAG;SbPval=0.9;Source=Platypus;TC=103;TCF=3;TCR=100;TR=83;WE=21344040;WS=21343972;set=Platypus	GT:AD:AF:DP	1/1:20,83:0.81:103
chr22	21343992	.	GGGCGCA	G	7778.73	.	AC=2;AF=1.00;AN=2;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.93;QD=42.28;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	21344001	.	TAGAGGAGGTGAGGGGCACGGGGAGCCAGGGC	T	4578.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.570;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.93;MQRankSum=0.788;QD=25.58;ReadPosRankSum=-0.604;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:2,177:0.99:179
chr22	21344905	rs178290	A	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	21344920	rs17820542	G	C	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	21346485	rs112544	T	C	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	21346719	rs756876	A	C	17281.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr22	21348084	rs178291	T	C	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	21348914	rs4822790	C	T	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr22	21349037	rs178292	A	G	10173.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr22	21350461	rs178294	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	21354970	rs426938	C	G	10867.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,424:1.00:424
chr22	21356029	rs2075269	T	C	8215.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.931;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.51;ReadPosRankSum=-1.242;SOR=0.313;set=HC	GT:AD:AF:DP	1/1:1,321:1.00:322
chr22	21356316	rs79461566	C	G	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	21356538	rs368989	A	T	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	21356566	rs369250	A	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	21356824	rs28372939	G	A	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr22	21356892	rs66918515	AAGAC	A	4573.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	21356925	rs9625292	T	A	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=26.27;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	21365668	rs1210564	A	G	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.75;QD=21.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	21372374	rs55763104	G	A	18766.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.46;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,737:1.00:737
chr22	21372405	rs2073598	G	T	14412.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr22	21377301	rs1548411	C	A	15662.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.845;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=2.316;SOR=0.312;set=HC	GT:AD:AF:DP	1/1:1,608:1.00:609
chr22	21384516	rs61740649	C	T	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	21388605	rs2541956	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	21402372	rs77133550	G	A	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	21407523	rs59112939	G	C	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	21409619	rs2241224	C	G	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	21411598	rs46148	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	21576361	rs200542750	T	C	77.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=41.88;MQRankSum=-1.383;QD=12.90;ReadPosRankSum=-0.000;SOR=1.872;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chr22	21724377	rs72613702	G	A	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.11;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	21724423	rs78616296	C	T	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.18;QD=27.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	21724432	rs77052488	T	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	21797094	rs486362	C	G	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.33;QD=43.81;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	21797102	rs1210228	G	C	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.33;QD=43.81;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	21800042	rs467181	T	C	19979.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,780:1.00:780
chr22	21800444	rs128477	T	C	8001.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr22	21822001	rs183213118	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.55;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	21822372	rs66498338	CAGGATCCGGGGGT	C	125	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.87;QD=31.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	21822725	rs430214	T	C	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	21822744	rs395295	G	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	21822774	rs452545	T	G	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=27.85;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	21829480	rs402694	G	T	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.54;QD=24.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	21829507	rs140118179	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.96;QD=50.93;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	21829513	rs113567369	TTGTC	T	1043.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.27;QD=43.49;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	21830934	.	G	A	103.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.67;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	21832031	.	A	G	320.77	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=31.00;QD=64.15;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	21832041	.	G	A	500.77	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.07;QD=29.46;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	21832470	rs74875706	A	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.70;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	21838339	rs201760046	C	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.03;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	21842655	rs143994138	C	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.75;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	21846284	rs149272448	A	G	90.77	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.32;QD=30.26;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	21846326	.	GGGC	G	140.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=40.20;MQRankSum=-2.308;QD=5.41;ReadPosRankSum=-0.426;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr22	21846328	.	GC	G	193.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=40.20;MQRankSum=0.316;QD=8.07;ReadPosRankSum=2.756;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr22	22007143	rs395006	G	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	22007370	rs372150	T	C	10273.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr22	22024507	rs402225	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	22036832	rs1669112	T	C	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	22042079	rs741617	G	T	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	22042918	rs2278118	C	T	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	22048770	rs2070504	C	G	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	22057997	rs147967901	C	CGGG,CGGGG	2990.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=43.98;SOR=2.215;set=HC	GT:AD:AF:DP	1/2:0,33,35:0.49,0.51:68
chr22	22058000	rs861814	C	G	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.95;SOR=2.356;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	22058586	rs861813	T	C	2514.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	22221530	rs9610504	G	A	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr22	22287862	rs2027789	G	A	11556.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr22	22287964	rs2027790	T	C	9966.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr22	22288011	rs9607409	G	A	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	22288309	rs94194	T	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	22288560	rs9610645	G	A	5282.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr22	22300380	rs139013152	C	G	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	22312315	rs71316717	C	T	6834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=51.81;MQRankSum=0.656;QD=11.39;ReadPosRankSum=2.699;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:262,338:0.56:600
chr22	22312350	rs2187583	GG	CC	8307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.416;JOINED;MLEAC=1;MLEAF=0.500;MQ=51.06;MQRankSum=1.468;QD=24.87;ReadPosRankSum=6.669;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:124,210:0.63:334
chr22	22312790	rs4638895	C	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	22313669	rs2266972	G	A	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	22313829	rs239918	A	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	22318538	rs9610728	C	T	8409.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr22	22318671	rs9610729	G	A	5991.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr22	22322138	rs9610750	G	A	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	22322192	rs9607460	C	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	22324542	rs139881270	A	AGTGAGG	1700.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	22329851	rs9610773	G	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	22330082	rs239927	T	C	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	22330107	rs762474	T	G	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	22556270	rs5995639	T	C	21913.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=26.37;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,831:1.00:831
chr22	22556368	rs9306341	C	T	9196.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr22	22556662	rs2330029	A	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	22569448	rs5750741	T	A	18405.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr22	22569554	rs6001413	C	A	16985.77	.	AC=2;AF=1.00;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	1/1:1,656:1.00:657
chr22	22569640	rs6001415	T	G	7388.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr22	22577869	rs201277699	A	G	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.84;QD=25.34;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	22599808	rs2285019	C	T	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr22	22698027	rs1894246	A	G	7890.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr22	22712021	rs10674947	C	CCGGG	1296.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;QD=48.03;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	22712028	rs56355304	A	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=42.11;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	22712261	rs3753077	C	T	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.83;QD=29.06;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	22712276	rs5757971	A	G	2610.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.42;MQRankSum=0.886;QD=28.07;ReadPosRankSum=-1.192;SOR=0.404;set=HC	GT:AD:AF:DP	1/1:1,92:0.99:93
chr22	22712467	rs5757973	T	G	14437.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr22	22712742	rs3753078	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	22724135	rs11324703	GT	G	3344.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	22724394	rs7292000	T	C	7060.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr22	22730634	rs2009587	G	A	18891.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:0,738:1.00:738
chr22	22782442	.	T	A	2301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-0.826;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:100,124:0.55:224
chr22	22786410	rs165657	C	T	6045.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,236:1.00:237
chr22	22890492	rs13604	G	A	7626.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr22	22890752	rs17497512	A	G	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	22890792	rs17497547	T	C	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	22898414	rs113693405	A	AT	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-1.531;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:25,29:0.54:54
chr22	22901979	rs11370405	C	CG	333.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	22930770	rs6002909	A	G	13244.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr22	22989256	rs2904923	A	G	8823.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr22	23010943	rs406876	G	A	12193.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr22	23029263	rs443102	T	C	24088.77	.	AC=2;AF=1.00;AN=2;DB;DP=953;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.79;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,934:1.00:934
chr22	23029374	rs451369	G	A	18831.77	.	AC=2;AF=1.00;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	1/1:0,716:1.00:716
chr22	23029698	rs443756	T	C	13580.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr22	23040362	rs5996349	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	23040389	rs6003229	G	C	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	23040462	rs1312	T	C	9905.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr22	23040767	rs5751516	G	T	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	23055329	.	CTTAT	C	3729.73	.	AC=2;AF=1.00;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	23114748	rs71917069	CT	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=7.890;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.803;QD=0.74;ReadPosRankSum=-0.157;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:100,31:0.24:131
chr22	23135588	rs2016511	G	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	23154582	rs1065464	G	C	10770.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr22	23161843	rs72002333	TCC	T	3338.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	23165340	rs5996397	C	G	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	23165839	rs5844528	G	GC	5856.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	23223070	rs378183	G	A	7521.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr22	23247028	rs464478	A	G	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	23247082	rs2009433	C	T	9510.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr22	23248758	rs1059142	G	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.28;QD=24.90;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	23248839	rs7117	A	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.72;QD=27.65;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	23256464	rs463185	G	C	12883.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr22	23260276	rs139283039	GGC	G	2367.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:4,88:0.96:92
chr22	23260507	rs410521	T	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	23262162	rs375081	C	A	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	23263602	rs373405	C	T	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	23263708	rs737885	T	G	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	23405957	rs8139280	G	A	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	23478695	rs9612240	C	T	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	23479758	rs34504974	G	GT	2347.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	23480962	rs5759598	T	G	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	23481133	rs10568631	GA	G	2499.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=-1.000;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:73,195:0.73:268
chr22	23482460	rs4822360	A	G	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	23482718	rs4822361	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	23482744	rs4822362	C	A	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	23492236	rs9612248	C	T	7327.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr22	23494833	rs5759603	T	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	23494904	rs2301555	T	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	23501286	rs2246716	T	G	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr22	23502987	rs9612252	A	G	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	23503008	rs9612253	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	23503170	rs5759612	A	G	8987.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr22	23503205	rs5759613	G	C	8679.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr22	23503266	rs5759614	G	A	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr22	23503319	rs5759615	A	G	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	23503533	rs5759617	G	T	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	23503569	rs10775764	T	C	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	23503580	rs9608085	C	T	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	23503651	rs713682	C	T	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr22	23503756	rs737818	G	A	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	23503819	rs737819	T	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	23504862	rs5759619	C	T	33723.77	.	AC=2;AF=1.00;AN=2;DB;DP=1302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,1293:1.00:1293
chr22	23504916	rs5759620	G	A	24696.77	.	AC=2;AF=1.00;AN=2;DB;DP=938;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,932:1.00:932
chr22	23504959	rs5759621	C	T	13614.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:1,497:1.00:498
chr22	23505084	rs5751594	G	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	23505101	rs5844548	C	CT	252.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-1.195;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:4,19:0.83:23
chr22	23523073	.	G	GC	494.73	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	23523082	rs199698427	G	GC	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	23540609	rs4822371	A	G	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	23585132	rs1004040	A	G	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	23596614	rs150910844	A	G	8700.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr22	23627441	rs131675	T	C	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	23629306	rs141317828	C	T	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	23657477	rs180810	A	G	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=45.20;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	23657495	rs180811	C	G	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=36.80;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	23657735	rs180812	G	A	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	23735649	rs8135826	C	A	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	23982724	rs56397271	T	C	30100.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=44.73;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,673:1.00:673
chr22	23982727	rs28645846	A	G	29979.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=44.61;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,672:1.00:672
chr22	23982775	rs12627958	C	T	13054.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.42;QD=25.80;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr22	24034288	rs738786	A	G	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	24035970	rs2070446	C	T	9236.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr22	24038847	rs1007298	T	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	24086026	rs41277301	C	T	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	24106674	rs140181	G	A	13633.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr22	24108288	rs140182	C	G	10249.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr22	24108412	rs80027270	G	A	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	24109550	rs131444	T	C	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	24121378	rs738792	C	T	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr22	24122499	rs9612427	G	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	24125565	rs2877173	G	A	5791.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr22	24129553	rs55705149	GGC	G	1136.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.67;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	24135968	rs11413092	C	CT,CTT	801.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.464;SOR=0.807;set=HC	GT:AD:AF:DP	1/2:12,31,21:0.48,0.33:64
chr22	24143502	rs738797	C	G	14366.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr22	24143573	rs35502837	C	A	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	24145395	rs5760030	A	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	24145675	rs5751738	G	C	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	24176959	rs35305666	CA	C	10753.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=36.83;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr22	24179724	rs2070462	G	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	24199261	rs71184919	G	GT	749.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=4.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.551;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:38,38:0.50:76
chr22	24199262	rs9680524	G	T	282.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.486;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:51,25:0.33:76
chr22	24199764	rs11393545	A	AC,ACC	1144.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.337;QD=22.89;ReadPosRankSum=1.453;SOR=1.654;set=HC	GT:AD:AF:DP	1/2:3,22,25:0.44,0.50:50
chr22	24204158	rs2275979	A	G	141.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	24209759	rs2330626	G	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	24210050	rs4428104	A	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	24224655	rs9608213	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	24224659	rs9612499	C	A	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=1.814;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	24226242	rs2070460	A	G	8414.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr22	24231164	rs11312267	GA	G	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.501;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr22	24237463	rs2070767	T	C	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	24300660	rs74718778	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	24300683	rs74325681	G	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	24300701	rs201920824	C	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	24325006	rs200925305	G	A	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.37;QD=44.09;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	24325024	rs201723657	C	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.37;QD=44.09;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	24325047	rs149686121	C	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.37;QD=44.09;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	24340938	rs140290	A	G	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	24345691	rs140302	A	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	24376322	rs4630	G	A	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	24377034	rs140308	A	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	24379577	.	CT	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-1.659;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:83,31:0.27:114
chr22	24383954	rs140313	C	T	16453.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.314;ClippingRankSum=0.000;DB;DP=658;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.79;ReadPosRankSum=2.453;SOR=0.389;set=HC	GT:AD:AF:DP	1/1:3,635:1.00:638
chr22	24459438	rs762273	T	C	11202.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr22	24468386	rs17854874	G	A	17835.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr22	24480503	rs4820581	G	A	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	24551909	rs915595	T	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	24561364	rs7293224	A	G	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	24564477	rs17854875	C	T	9599.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr22	24578987	.	T	C	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.042;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=6.023;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-6.991;QD=5.78;ReadPosRankSum=-3.347;SOR=1.957;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr22	24578995	rs62231980	G	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.048;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=6.895;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-6.257;QD=5.24;ReadPosRankSum=-2.040;SOR=1.820;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr22	24579049	rs62231981	G	A	2441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.721;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-2.956;QD=9.04;ReadPosRankSum=-2.105;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:145,125:0.46:270
chr22	24579157	rs200945728	GA	TC	4547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.445;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-4.585;QD=16.66;ReadPosRankSum=0.226;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:151,122:0.45:273
chr22	24579219	rs399140	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.507;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=20.028;MLEAC=1;MLEAF=0.500;MQ=52.35;MQRankSum=-4.806;QD=2.76;ReadPosRankSum=-3.564;SOR=3.617;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr22	24583879	rs2070470	T	C	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=1.041;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr22	24627910	rs77343908	T	A	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	24628928	rs762276	G	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	24717850	rs204710	A	G	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:1,241:1.00:242
chr22	24730587	rs5760351	C	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	24761467	rs204718	G	A	6856.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr22	24808435	rs743363	G	A	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	24837301	rs5751876	T	C	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	24891292	rs2070474	C	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	24898310	rs2232866	C	T	14831.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,573:1.00:573
chr22	24917852	rs2232868	G	A	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	24921558	rs5996713	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	24944053	rs4822506	C	T	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr22	24953479	rs11427005	C	CT	461.74	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr22	24953571	rs5760472	A	G	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr22	25119284	rs131472	G	A	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	25119300	rs140345	T	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	25145453	rs1892723	C	T	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	25152656	rs377148467	C	T	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	25246112	rs139670	G	A	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	25255580	rs56318899	A	G	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	25263240	rs5996780	G	A	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	25263273	rs5996781	C	T	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	25270455	rs9624633	G	C	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr22	25275393	rs737769	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	25282765	rs139719	T	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	25289335	rs3765480	G	C	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	25291095	rs5760713	C	A	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	25293847	rs73405209	C	T	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	25294416	.	C	T	11935.77	.	AC=2;AF=1.00;AN=2;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr22	25297755	rs139738	G	A	6314.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr22	25297965	rs139739	T	C	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr22	25315753	rs5752018	G	A	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	25334037	rs10658230	C	CTCATTCAT	10173.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chr22	25334066	.	T	TCATTCATC	2300	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=2;HapScore=1;MGOF=21;MMLQ=28;MQ=60.22;NF=16;NR=41;PP=2300;QD=40.4912280702;SC=ATTCATTCATTCCATAAATAT;SbPval=0.65;Source=Platypus;TC=115;TCF=35;TCR=80;TR=57;WE=25334074;WS=25334056;set=Platypus	GT:AD:AF:DP	1/0:58,57:0.50:115
chr22	25577554	rs9612886	G	A	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	25577688	rs763279	G	A	9141.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr22	25577733	rs9612887	T	C	6377.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr22	25577846	rs6004466	T	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	25586564	rs713707	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	25597331	rs2269672	T	C	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	25624049	rs5760923	G	A	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	25625554	rs55700037	G	A	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr22	25714218	rs2072869	A	T	13594.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr22	25714404	rs117017406	C	T	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	25716068	rs133162	C	G	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=26.31;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	26157068	rs61734946	C	G	10584.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr22	26157144	rs17623980	A	G	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	26159129	rs133884	C	CTT	5645.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	26159289	rs133885	G	A	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	26163996	rs133901	T	C	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	26164079	rs133902	C	T	7692.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr22	26166011	rs133903	C	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	26166900	rs3859866	G	C	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr22	26168242	rs138377965	G	A	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	26173661	rs5761170	T	C	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	26176224	rs74845474	G	A	4182.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr22	26177593	rs28729695	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.29;QD=36.40;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	26181594	rs13053299	T	C	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	26193824	rs2877299	C	T	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	26193982	rs738642	C	G	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr22	26194045	rs738643	T	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	26194093	rs738644	G	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	26219412	rs5752226	T	C	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	26222505	rs2331162	G	A	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	26228757	rs35045598	TA	T	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=21.52;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	26228797	rs3859879	A	G	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=46.36;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	26228805	rs11090413	C	T	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=38.91;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	26239850	rs5761268	C	A	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	26239906	rs5761269	A	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	26239950	rs5761271	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	26247456	rs5996988	G	A	7524.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr22	26247607	rs6004798	C	T	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	26273834	rs4822666	A	C	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	26273834	.	ACG	CCT	2485	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=1;HapScore=1;MGOF=24;MMLQ=26;MQ=60.0;NF=44;NR=23;PP=2485;QD=37.8875802218;SC=ATTCCTCCTAACGGAAACTTT;SbPval=0.5;Source=Platypus;TC=74;TCF=49;TCR=25;TR=67;WE=26273858;WS=26273824;set=Platypus	GT:AD:AF:DP	1/1:7,67:0.91:74
chr22	26273836	rs4822667	G	T	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	26273850	rs695428	G	C	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	26273893	rs4822668	G	C	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	26298754	rs2072016	G	A	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	26298874	rs2072017	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	26317155	rs739284	A	G	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	26342056	rs4820662	C	T	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=26.09;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	26342232	rs9613047	T	C	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	26343593	rs2072006	A	G	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	26343805	rs2072007	A	G	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	26346311	rs59715907	A	AT	726.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=-2.149;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:12,40:0.77:52
chr22	26346484	.	A	ATGTGTGTGTG	95.37	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	26388548	rs9613067	A	G	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	26688838	rs17304075	C	T	17556.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:0,671:1.00:671
chr22	26689105	rs17395296	G	A	14146.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,555:1.00:555
chr22	26690407	rs137204	T	C	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	26693026	rs146559583	C	A	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr22	26702015	rs1210894	A	C	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr22	26769234	rs1076660	T	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	26769308	rs669184	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	26777795	rs482902	A	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	26777951	rs601548	T	G	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr22	26778076	rs143254900	GA	G	3617.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=36.18;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	26829914	rs3747128	T	C	19921.77	.	AC=2;AF=1.00;AN=2;DB;DP=815;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,769:1.00:769
chr22	26830316	rs11705277	G	A	8822.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr22	26830478	rs3788398	A	G	6147.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr22	26830523	rs41277331	T	C	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	26853905	rs1894704	C	A	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	26853980	rs1894705	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	26854441	rs1894706	G	A	9641.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr22	26854682	rs4822722	T	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	26859942	rs5752330	C	T	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr22	26860269	rs2014410	G	C	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	26861545	rs3213583	A	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	26862153	rs739289	C	A	7174.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr22	26862212	rs713998	T	C	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	26864658	rs739290	A	G	8901.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr22	26867490	rs5761549	G	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	26877539	rs739291	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	26879823	rs968425	C	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	26879946	rs66831137	GGAGGCGGCGCCCCGGGGGAGA	G	505.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.14;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	26884039	rs4820682	G	A	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	26886953	rs34878449	GT	G	917.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.073;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.441;QD=16.10;ReadPosRankSum=2.205;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:4,53:0.93:57
chr22	26887099	rs4820683	T	A	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr22	26887829	rs1045523	A	G	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	26892898	rs5761562	C	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	26894985	rs2187956	C	T	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr22	26895061	rs2157586	G	A	6085.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr22	26895337	rs1008530	G	A	15138.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr22	26924149	rs2283821	C	T	6322.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr22	26924312	rs2283822	C	T	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	26924336	rs2283823	C	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	26928446	rs4149482	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.10;QD=25.03;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	27004089	rs5761626	A	C	4452.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr22	27009128	rs4822751	G	T	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr22	27019128	rs2071860	C	T	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	27021457	rs5761637	T	C	7801.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	28146768	rs11379447	A	AG	272.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.30;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	28316591	rs75321888	T	TG	2098.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.85;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	28386620	rs470100	A	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.13;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	29091037	rs5762749	G	C	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	29104940	rs374623367	CAA	C,CA	7777.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;QD=44.96;SOR=1.424;set=HC	GT:AD:AF:DP	1/2:0,137,36:0.79,0.21:173
chr22	29104955	rs5762756	A	C	8812.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.187;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.084;QD=40.43;ReadPosRankSum=-1.121;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:2,216:0.99:218
chr22	29104959	rs5762757	A	C	10590.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=42.19;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr22	29130813	rs201340887	G	GA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-2.408;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr22	29133462	.	CTT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.31;ReadPosRankSum=-0.232;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr22	29137944	rs2236142	G	C	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	29192140	.	G	A	3388.77	.	AC=2;AF=1.00;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	29413785	rs4823005	A	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	29414001	rs2347790	A	G	7252.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr22	29438327	rs12484832	A	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	29439201	rs9613785	G	A	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	29440692	rs713834	A	C	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	29446611	rs5997435	A	C	5745.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr22	29446975	rs6005967	T	C	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	29456733	rs6005977	T	C	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	29469130	rs7292708	A	C	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	29490497	rs134657	G	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	29495079	rs134665	G	A	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	29562853	rs132316	T	C	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	29562893	rs132317	G	C	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	29656389	rs2231398	G	T	6113.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr22	29688751	rs34395867	CT	C	111.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=0.957;QD=5.88;ReadPosRankSum=1.158;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr22	29692488	rs140065	G	T	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.86;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	29692497	rs131190	G	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.23;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	29704125	rs11090564	C	T	4137.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	29707639	rs34777709	G	GC	5662.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=35.39;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	29711251	rs2519485	T	C	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr22	29727886	rs2857465	T	C	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	29833639	rs174718	C	G	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	29837537	rs3804076	T	C	8949.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr22	29837566	rs71324764	TTCC	T	19237.73	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr22	29879265	rs144426244	C	CA	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=0.98;ReadPosRankSum=-2.047;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:157,41:0.21:198
chr22	29881884	rs4823040	G	A	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	29885473	rs5763269	C	T	11860.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:2,458:1.00:460
chr22	29886386	rs56200920	C	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	29904519	rs2283859	T	C	7238.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr22	29908072	rs1049534	C	T	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	29908154	rs2007668	G	T	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr22	29913272	rs737976	C	T	7297.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr22	29924212	rs5763297	T	C	16507.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr22	29925284	rs2302141	T	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	29938677	rs2240637	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.25;SOR=2.160;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	29939336	.	CAAA	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-1.469;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr22	29977229	rs71640299	G	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	30035021	rs79901896	G	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	30077361	rs140086	G	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	30124896	rs13057811	G	A	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	30124968	rs9614042	C	T	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	30125596	rs5997507	C	T	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr22	30125620	rs5997508	G	A	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	30127367	rs2232903	G	T	7498.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr22	30138497	rs60102307	G	A	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr22	30163526	rs76013375	A	G	15503.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=0.694;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:2,622:1.00:624
chr22	30184950	rs7954	A	G	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	30188672	rs2240364	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	30200936	rs36572	T	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	30202079	rs12159277	G	A	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	30202774	rs737945	G	C	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	30202984	rs12627866	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	30217992	rs5763521	C	T	461.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-0.577;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr22	30218213	rs73394831	C	A	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	30218270	rs17711461	T	C	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	30223584	rs112670477	A	G	7890.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr22	30223796	rs148580571	T	TCTC	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	30229399	rs3958025	C	G	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.72;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	30234192	.	T	TGCCGCCGCCGCC,TGCCGCCGCCGCCGCC	3539.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.623;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=3.315;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.80;MQRankSum=-0.066;QD=30.00;ReadPosRankSum=1.600;SOR=0.473;set=HC	GT:AD:AF:DP	1/2:1,22,95:0.19,0.81:118
chr22	30234218	rs7289250	A	T	7307.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=40.83;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	30366924	rs34749290	C	CT	1502.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.000;QD=18.78;ReadPosRankSum=0.342;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:5,75:0.94:80
chr22	30366947	rs10222281	C	G	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.74;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	30374920	rs737907	C	T	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	30394623	rs5763689	T	C	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	30398732	rs138165493	CT	C	2372.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	30399000	rs12165769	A	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	30405151	rs41157	T	C	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr22	30412759	rs17647135	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	30414091	rs11705418	C	T	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	30418161	rs41168	A	C	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	30603118	rs112608336	G	A	8108.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr22	30681797	rs6147585	T	TCTGCCCCAGCCCTTGGTGCTCCCC	5883.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;MQRankSum=0.000;QD=32.15;ReadPosRankSum=1.032;SOR=0.339;set=HC	GT:AD:AF:DP	1/1:1,182:0.99:183
chr22	30690904	rs77539689	C	A	10091.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr22	30691631	rs2097919	G	A	12741.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr22	30714684	rs740219	A	C	13109.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr22	30730745	rs11705056	C	T	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	30735047	rs11089445	A	G	8010.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr22	30738161	rs9608885	C	T	5756.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr22	30738737	rs5753080	G	A	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr22	30742623	rs740221	T	G	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	30761907	.	G	A	2634.77	.	AC=2;AF=1.00;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	30762139	rs41281641	C	T	16716.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,645:1.00:645
chr22	30771554	rs2015035	T	G	29834.77	.	AC=2;AF=1.00;AN=2;DB;DP=1169;set=Intersection	GT:AD:AF:DP	1/1:0,1159:1.00:1159
chr22	30774340	rs9619104	A	G	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	30803702	rs370128450	CT	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.481;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr22	30822920	rs5844906	T	TG	7942.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=35.30;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr22	30857373	rs2240345	A	C	12919.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr22	30860830	rs2269961	C	T	6602.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr22	30862146	rs1047917	C	A	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	30862400	rs1057995	T	A	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	30863163	rs5997653	C	T	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	30863234	rs151165173	A	ACATCCATCCATC	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	30864692	rs4820854	G	A	18955.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	1/1:2,756:1.00:758
chr22	30864817	rs2269963	A	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	30867139	rs5997658	GC	TT	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	30927975	rs5749118	C	T	10823.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,425:1.00:425
chr22	30929905	rs4820864	A	G	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	30930080	rs5753187	T	A	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	30930158	rs2899151	T	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	30934816	rs5753190	T	C	15069.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr22	30934887	rs5753191	G	A	8583.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr22	30953295	rs2267161	C	T	10608.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr22	30987861	rs737953	G	C	28649.77	.	AC=2;AF=1.00;AN=2;DB;DP=1111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,1096:1.00:1096
chr22	30988382	rs13053923	G	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	31010242	rs5749134	G	C	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	31010556	rs5997703	C	G	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	31011557	rs2267163	T	C	17073.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=0.040;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,650:1.00:652
chr22	31011610	rs1801198	G	C	16823.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr22	31011882	rs4820021	A	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	31011906	rs5749135	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	31013549	rs740235	G	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	31018777	rs2301956	G	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	31018817	rs2301957	C	T	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	31022272	rs2072194	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.48;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	31032920	rs5997714	A	G	36732.77	.	AC=2;AF=1.00;AN=2;DB;DP=1400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,1387:1.00:1387
chr22	31059250	rs2240002	T	G	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	31089958	rs11383654	G	GA	850.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=1.039;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:14,55:0.80:69
chr22	31090067	rs111265481	T	TCCACAACTA	9929.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=45.97;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr22	31091139	rs13053290	A	G	10502.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr22	31091633	rs7288635	A	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	31266777	rs4820909	T	C	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	31285680	rs5749186	G	A	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	31301734	rs10625967	A	AGG	5102.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	31302125	rs3804084	C	G	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=27.80;SOR=2.033;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	31302233	rs3804085	T	C	6060.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr22	31329056	rs2074578	G	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	31329954	rs5753398	A	G	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	31333631	rs3747151	T	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	31335724	rs1005252	T	A	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	31336149	rs739896	G	A	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	31342376	rs2072132	G	C	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	31342594	rs5753403	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	31354653	rs737924	G	A	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	31489575	rs62236130	G	A	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	31491295	rs3205187	G	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	31493460	rs5753458	T	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	31494568	rs59174577	A	ACC	2546.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=38.01;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	31494866	rs4281997	G	T	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	31496837	rs13054770	C	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	31497054	rs5753459	A	C	4807.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:2,193:0.99:195
chr22	31497110	rs35657209	G	T	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	31501788	rs11705137	T	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	31503560	rs13053829	C	T	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	31503580	rs140459227	GC	G	2877.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=40.53;SOR=1.451;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	31518824	rs8137317	A	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	31521659	.	C	T	32653.77	.	AC=2;AF=1.00;AN=2;DP=1285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,1244:1.00:1244
chr22	31521850	rs2240431	A	C	30768.77	.	AC=2;AF=1.00;AN=2;DB;DP=1223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,1191:1.00:1191
chr22	31522064	rs7284757	G	A	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	31524151	rs144746268	C	T	18292.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr22	31528932	rs2413027	A	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	31529463	rs35342535	C	A	8447.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr22	31532568	rs757872	G	C	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	31532960	rs2232183	C	T	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	31533967	rs2074739	G	A	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	31536133	rs2232176	A	C	9221.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr22	31556103	rs5997893	A	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	31583007	rs5997902	A	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	31600460	rs2413035	T	C	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	31602139	rs3208937	A	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	31602187	rs13158	C	T	98.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.07;QD=24.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	31658281	rs2073857	A	G	5870.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr22	31663842	rs2228619	C	G	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr22	31664032	rs5997929	C	T	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	31669267	rs2040532	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	31672676	rs59315359	G	A	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	31672752	rs5997933	A	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.90;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	31679110	rs2040533	G	C	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	31685458	rs5753543	G	A	10308.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr22	31687142	rs5753544	G	C	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr22	31687313	rs4820044	A	G	8241.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr22	31724972	rs131207	CA	C	2136.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	31795866	rs4820047	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	31838085	rs5997988	G	A	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=1.088;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	31844293	rs738658	A	C	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	31844373	rs2012451	A	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	31846079	rs144780466	C	CT	1276.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	31849362	.	C	CT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.458;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:36,17:0.32:53
chr22	31854370	rs4820048	A	G	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	31854434	rs11293411	AT	A	5053.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	31904170	rs2413054	A	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	31926725	rs3818134	C	T	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	31957065	rs13053428	G	A	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	31971071	.	CGT	C	504.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=26.56;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	31971172	rs10657905	A	ATCT	5167.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	31971258	rs5753700	T	C	7366.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr22	31976528	.	C	CTT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=0.319;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr22	31983287	rs112798271	A	ATTTGTTTTGT	4434.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=-0.054;QD=25.34;ReadPosRankSum=0.478;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:2,173:0.99:175
chr22	32001037	rs8142376	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	32002294	rs5753723	T	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	32011225	rs12171042	T	C	11529.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chr22	32081436	rs33960159	CA	C	978.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=7.239;MLEAC=1;MLEAF=0.500;MQ=61.24;MQRankSum=2.978;QD=7.83;ReadPosRankSum=0.246;SOR=1.470;set=HC	GT:AD:AF:DP	0/1:38,87:0.70:125
chr22	32097775	rs6518754	T	C	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=25.09;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	32099783	.	AT	A	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=0.137;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr22	32179850	rs138286	G	C	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	32211371	.	CTTT	C	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=-0.860;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr22	32302045	rs146449468	C	T	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr22	32302487	.	C	CAGGCTGCACCAGGGTTAGA	7385.73	.	AC=2;AF=1.00;AN=2;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	32340565	rs71697452	TGCCTGCA	T	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	32340837	rs71845980	CG	C	991.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.522;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.338;QD=27.55;ReadPosRankSum=1.736;SOR=0.679;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr22	32340880	rs138873821	C	CG	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	32341669	rs2301415	A	G	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	32343613	rs10631788	G	GCTCT	1760.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	32346468	rs4820059	G	A	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	32352791	rs1049583	G	A	16438.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr22	32435409	rs130262	G	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	32463875	rs135110	G	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	32478972	rs131880	A	AG	10596.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr22	32495071	rs3069158	CA	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.52;ReadPosRankSum=-0.837;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr22	32495089	.	AAAAAT	A	67.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=0.677;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr22	32495092	rs11089534	A	T	130.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.344;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.17;ReadPosRankSum=-0.186;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr22	32545849	rs58570639	C	CA	3065.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=39.81;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	32753972	rs11912799	G	A	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.73;QD=30.23;SOR=3.877;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	32754036	rs11089557	G	A	9800.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr22	32754103	rs58637580	A	C	13572.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr22	32754230	rs57676160	A	G	27000.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.77;QD=44.85;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,602:1.00:602
chr22	32754230	.	ACC	GCT	2947	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=3;HapScore=1;MGOF=10;MMLQ=23;NF=155;NR=152;PP=2947;QD=20;SC=GTGTGGATGCACCGTCTGCCT;SbPval=0.47;Source=Platypus;TC=319;TCF=165;TCR=154;TR=307;WE=32754240;WS=32754220;set=Platypus	GT:AD:AF:DP	1/1:12,307:0.96:319
chr22	32754232	rs57606003	C	T	27000.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.79;QD=44.85;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,602:1.00:602
chr22	32754306	rs16987625	T	C	13901.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr22	32754500	rs5754006	C	G	7036.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	32754512	rs61625826	TG	T	6520.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	32754561	rs5754007	C	G	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	32756407	rs5749408	A	G	15705.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr22	32756555	rs136471	G	C	12717.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr22	32756744	rs2076035	A	G	8939.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:1,348:1.00:349
chr22	32756830	rs67352955	CA	C	4041.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;MQ=59.87;set=Intersection	GT:AD:AF:DP	1/1:4,199:0.98:203
chr22	32756899	rs5749409	T	C	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	32759025	rs5998440	G	C	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	32763635	rs72565573	CT	C	1733.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.296;QD=15.21;ReadPosRankSum=1.174;SOR=0.485;set=HC	GT:AD:AF:DP	1/1:10,104:0.91:114
chr22	32763787	rs738267	T	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	32763864	rs188424337	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	32764388	rs5998456	T	C	4832.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.47;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	32764397	rs5998457	T	C	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=1.274;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	32784051	rs11635	T	C	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr22	32790101	rs11396073	C	CT	271.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.12;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	32791003	rs2072818	A	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	32791929	rs3215463	GC	G	824.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	32795641	rs5749426	C	T	3364.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	32796247	rs737779	G	C	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr22	32804313	rs5754073	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	32804656	rs2076043	G	A	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	32811952	rs5998478	A	G	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	32813176	rs5844996	CT	C	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.102;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.815;QD=7.45;ReadPosRankSum=-0.365;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr22	32843436	rs4821063	C	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	32849192	rs7290725	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	32875190	rs11107	G	A	11218.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr22	32875388	rs5845002	CT	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.615;QD=5.81;ReadPosRankSum=-1.375;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr22	32886998	rs738982	T	C	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	32887150	rs9726	C	T	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	32891368	rs10648473	T	TTC	984.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.24;QD=37.87;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	32934274	rs2239766	T	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	32937740	rs135479	T	C	13875.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr22	32992674	rs139005191	C	T	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	33376839	rs36093480	CT	C	811.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:4,51:0.93:55
chr22	33832735	rs713740	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	34000230	rs695504	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	34000282	rs695258	C	G	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	34157526	rs16992986	G	A	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	35463162	rs361863	A	G	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	35463179	rs361668	T	C	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	35463249	rs362090	C	T	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	35658225	rs4820189	A	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.03;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	35660875	rs1053593	G	T	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	35679951	rs2272789	T	C	7814.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr22	35680095	rs2272790	G	A	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	35681893	rs1543303	G	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	35683238	rs741995	T	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	35684533	rs5750093	G	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	35695802	rs4461	G	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=25.49;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	35696077	rs138728	G	C	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	35727265	.	C	CT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.713;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:73,18:0.20:91
chr22	35785668	rs3216831	C	CT	527.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	35796652	rs743813	C	G	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	35797333	rs743815	T	C	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr22	35799542	rs713618	C	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	35810052	rs80433	T	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	35812504	.	CTGTGTGTG	C	2095.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.638;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=2.457;MLEAC=2;MLEAF=1.000;MQ=60.19;MQRankSum=0.056;QD=36.77;ReadPosRankSum=1.733;SOR=0.383;set=HC	GT:AD:AF:DP	1/1:3,54:0.95:57
chr22	35817553	rs2071744	C	T	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr22	35817597	rs133431	C	A	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	36006923	rs35171458	G	GC	2129.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	36007045	rs7292	G	A	14709.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr22	36007075	rs7293	C	T	13998.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr22	36114047	rs4821438	C	T	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.15;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	36114054	rs2899256	C	T	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	36122517	rs17723764	T	C	13007.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr22	36123083	rs2076672	C	T	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr22	36177713	rs200137291	C	T	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	36218874	rs57822436	CT	C	715.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.716;QD=8.32;ReadPosRankSum=-0.369;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:20,66:0.77:86
chr22	36335309	rs5756005	G	A	5722.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr22	36424450	rs9607299	A	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	36537725	rs61731692	G	A	8085.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr22	36541725	rs1807672	G	T	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	36545137	rs132642	A	T	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	36545780	rs7290574	C	T	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	36545826	rs132644	T	C	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	36556823	rs132653	G	T	7268.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr22	36587202	rs6000172	G	A	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	36587223	rs6000173	G	T	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	36587279	rs6000174	A	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	36587486	rs2227167	A	G	11269.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr22	36587511	rs2227168	C	T	11240.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr22	36587845	rs3075364	A	ACT	26719.73	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr22	36587952	rs2227169	C	T	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr22	36591380	rs2007468	A	G	6545.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr22	36597584	rs191290290	G	A	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.454;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	36623361	rs138456906	CAAAAA	C	1024.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.869;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.02;ReadPosRankSum=0.724;SOR=2.566;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr22	36623731	rs132760	T	C	16846.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:1,639:1.00:640
chr22	36633452	rs1557535	C	A	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	36633564	rs916263	T	C	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	36633836	rs916264	A	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	36635444	rs136144	A	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	36657596	rs713929	A	G	10052.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr22	36657628	rs136163	T	G	11416.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr22	36661149	rs136169	A	G	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.39;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	36661152	rs28480494	G	A	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	36661330	rs2239785	G	A	7089.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr22	36661536	rs136174	C	A	14033.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr22	36661566	rs136175	G	A	12485.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:1,482:1.00:483
chr22	36661646	rs136176	G	A	6716.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	36661842	rs136177	G	A	8109.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr22	36690113	rs4821478	G	A	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	36691607	rs710181	A	C	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	36695173	rs2187776	C	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	36695247	rs4821480	G	T	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	36705529	rs1557529	A	G	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	36708084	rs2413396	C	T	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	36708338	rs2157257	A	G	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	36708400	rs34645860	C	CA	1625.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	36710047	rs5756141	T	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.63;SOR=2.073;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	36710056	rs5756142	A	G	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.21;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	36710183	rs3752462	T	C	12987.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr22	36712387	rs5756150	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=27.31;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	36712400	rs67607973	GA	G	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.766;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr22	36712414	rs5756151	C	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.24;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	36712472	rs5756152	A	G	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	36716202	rs3833922	C	CT	8810.73	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:3,344:0.99:347
chr22	36716209	rs3752463	G	A	16118.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr22	36722534	rs8136336	G	A	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	36722838	rs11316214	CG	C	3199.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	36723697	rs5756157	T	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	36744886	rs56147525	GC	G	10161.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:3,337:0.99:340
chr22	36744888	rs56084634	C	G	10293.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.01;ReadPosRankSum=0.997;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:3,340:0.99:343
chr22	36744888	.	CCC	GCT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.65;FR=1.0000;HP=11;HapScore=1;MGOF=1;MMLQ=22;MQ=59.96;NF=124;NR=81;PP=2947;QD=20;SC=GAAGACCCGCCCCCCCCCCCC;SbPval=0.53;Source=Platypus;TC=236;TCF=142;TCR=94;TR=205;WE=36744898;WS=36744876;set=Platypus	GT:AD:AF:DP	1/1:31,205:0.87:236
chr22	36744890	rs55932404	C	T	10294.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.60;ReadPosRankSum=2.184;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:5,355:0.99:360
chr22	36872750	rs2281082	T	G	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	36872873	rs150502647	C	T	13380.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,519:1.00:519
chr22	36891786	rs5756218	G	C	12643.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,493:1.00:493
chr22	36891858	rs5756219	C	A	14642.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=4.883;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=3.121;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.33;ReadPosRankSum=0.513;SOR=0.185;set=HC	GT:AD:AF:DP	1/1:3,575:0.99:578
chr22	36900271	rs2277841	T	C	12733.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr22	36900806	rs760718	A	G	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	36907098	rs728785	T	C	12551.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr22	36919375	rs73169675	G	C	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr22	36962353	rs2267338	C	G	11218.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr22	36983404	rs2235681	C	G	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	36983428	rs2235682	G	A	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr22	37159819	rs739002	T	C	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	37163329	rs1048012	C	T	13185.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,495:1.00:495
chr22	37171611	rs2009667	A	G	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	37196871	rs3484	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	37196971	rs2001063	C	A	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	37207319	rs141085901	C	CTAAATAAA	231.82	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	37266322	rs2075938	A	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	37267767	rs2072708	A	G	6724.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr22	37268257	rs5756374	C	T	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	37268501	rs2072710	A	G	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	37268555	rs2072711	A	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=25.40;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	37271882	rs2075939	T	C	28312.77	.	AC=2;AF=1.00;AN=2;DB;DP=1113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,1088:1.00:1088
chr22	37318426	rs2280976	C	T	6478.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.34;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	37318446	rs2075940	G	A	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	37318515	rs2075941	T	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	37319425	rs2072713	G	T	10165.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr22	37319947	rs4437064	C	G	10203.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr22	37328751	rs2075936	A	G	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	37328966	rs1534879	G	C	7323.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr22	37330082	rs2075937	T	C	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr22	37331305	rs2239749	A	G	7826.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr22	37333794	rs131840	A	G	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	37387257	rs9610624	T	C	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr22	37387461	rs6000523	C	T	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	37387505	rs9610625	C	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	37414410	.	G	A	15792.77	.	AC=2;AF=1.00;AN=2;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr22	37453259	rs710184	A	G	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	37453452	rs710185	C	T	9681.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr22	37491669	.	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=4.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-0.493;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr22	37499386	rs11704654	C	T	11662.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr22	37531257	rs3830742	A	AGT	2408.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:14,96:0.87:110
chr22	37531436	rs228953	G	A	12304.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.90;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,475:1.00:475
chr22	37532506	rs34577916	A	AC,ACC	1412.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=28.83;ReadPosRankSum=-1.170;SOR=1.802;set=HC	GT:AD:AF:DP	1/2:1,10,38:0.20,0.78:49
chr22	37533786	rs228957	C	G	8694.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.60;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr22	37533795	rs228958	G	C	8006.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=1.060;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	37535328	rs2281093	C	G	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	37539960	.	C	T	231	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=2;HapScore=2;MGOF=28;MMLQ=24;MQ=60.0;NF=5;NR=4;PP=231;QD=29.5301347275;SC=TGTGTGTGTGCGCGCATTCAT;SbPval=0.34;Source=Platypus;TC=34;TCF=23;TCR=11;TR=9;WE=37539968;WS=37539958;set=Platypus	GT:AD:AF:DP	1/1:25,9:0.26:34
chr22	37540249	.	G	C	842.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr22	37602583	rs11406761	G	GC	16032.73	.	AC=2;AF=1.00;AN=2;DB;DP=479;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr22	37678551	rs3213556	A	G	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	37678565	rs3213557	G	A	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	37678814	rs5995410	C	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	37678837	rs5995411	C	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	37691907	rs2269590	A	G	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	37695256	rs2301435	T	C	15039.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,597:1.00:597
chr22	37699377	rs2239822	T	C	26603.77	.	AC=2;AF=1.00;AN=2;DB;DP=1029;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,1019:1.00:1019
chr22	37700177	rs2284050	T	C	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	37707962	rs2269591	C	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	37708004	rs2269593	T	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=25.90;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	37770630	rs2071856	G	A	13270.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:1,510:1.00:511
chr22	37888868	rs5756696	G	C	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	37902177	rs738304	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	37906308	rs113275238	GCTCCTT	G	15191.73	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:5,590:0.99:595
chr22	37964299	rs2281098	C	G	16076.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.50;QD=26.97;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,596:1.00:596
chr22	37964408	rs200195385	CCAGCGCCTGCTGCAAACCCCT	C	17102.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.44;MQRankSum=3.016;QD=40.05;ReadPosRankSum=0.734;SOR=0.557;set=HC	GT:AD:AF:DP	1/1:3,424:0.99:427
chr22	38037110	.	C	T	9154.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.54;ReadPosRankSum=0.133;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:4,369:0.99:373
chr22	38086574	rs9610834	C	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	38119213	rs12628603	G	A	10686.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr22	38119754	rs67890459	TCAA	T	29954.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=1179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;MQRankSum=-0.103;QD=26.35;ReadPosRankSum=-1.376;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:2,1135:1.00:1137
chr22	38121152	rs9610841	C	A	16750.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr22	38122122	rs5756795	T	C	29065.77	.	AC=2;AF=1.00;AN=2;DB;DP=1106;set=Intersection	GT:AD:AF:DP	1/1:0,1084:1.00:1084
chr22	38122448	rs739137	C	T	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	38122462	rs739138	A	G	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	38129332	rs7284476	G	A	6557.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	38130385	rs13054052	A	C	15157.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr22	38130472	rs8140958	T	C	18348.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:0,721:1.00:721
chr22	38142468	rs5756803	A	G	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	38146585	rs4821704	C	T	7439.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr22	38146847	rs6519081	T	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	38153701	rs140302221	G	A	9484.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr22	38155317	rs5756810	C	G	7834.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr22	38161835	rs3833924	T	TG	1954.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	38168508	rs762984	T	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	38204089	rs710187	C	T	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr22	38211954	rs2285179	G	A	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	38212068	rs739269	C	T	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	38212762	rs13911	A	G	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	38220964	rs8138029	T	C	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	38243675	rs5750504	A	T	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=1.678;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	38251686	rs2157472	T	C	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr22	38282897	rs17752670	C	T	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	38308048	.	ATG	A	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.725;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:150,29:0.16:179
chr22	38321806	rs143910997	C	T	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	38341134	rs139859	T	C	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.454;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	38369976	rs139884	A	G	7761.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr22	38453679	rs5845366	A	AG	1831.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	38455469	rs713729	T	A	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	38463535	rs880669	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	38463652	rs2076369	T	G	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr22	38463968	rs2076370	A	G	19008.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.01;QD=25.24;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,753:1.00:753
chr22	38467784	rs760975	G	C	8466.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr22	38474696	rs2076371	A	G	7592.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr22	38474852	rs1004764	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	38477342	rs4289289	T	A	4178.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	38477930	rs2235573	G	A	21512.77	.	AC=2;AF=1.00;AN=2;DB;DP=850;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,827:1.00:827
chr22	38482327	rs191324911	G	A	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	38483155	rs142739979	T	TTCATGGGTG	6466.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.21;QD=46.86;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	38503847	rs6001006	C	T	19525.77	.	AC=2;AF=1.00;AN=2;DB;DP=776;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,769:1.00:769
chr22	38503968	rs13054158	C	T	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.72;SOR=1.743;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	38503972	rs56076229	C	T	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	38505266	rs60600671	A	G	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	38506509	rs4820313	A	G	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr22	38541791	.	A	AAC	105.90	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.21;QD=21.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	38609950	rs2235264	G	A	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	38611080	rs9610915	C	G	6518.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr22	38697031	.	C	A	4028.77	.	AC=2;AF=1.00;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	38699050	rs3830720	GAGGC	G	20873.73	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr22	38875549	rs401933	C	T	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	38877461	rs12004	T	G	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr22	38889657	rs2267390	C	T	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr22	38891984	rs138444	T	TA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.144;QD=2.79;ReadPosRankSum=1.095;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr22	38895521	rs3833951	AAAG	A	9794.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr22	38917543	rs10672394	T	TAC	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.464;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr22	38982321	rs5750627	T	C	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	38993370	rs5757162	C	T	5770.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr22	39003495	rs5757169	G	A	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr22	39016182	rs4821797	T	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	39024961	rs5995602	G	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	39034867	rs5757193	G	A	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	39045884	rs143131237	AGAAAG	A	213.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=0.714;QD=9.72;ReadPosRankSum=0.575;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr22	39064209	rs2072795	G	A	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	39064230	rs2072796	A	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	39066820	rs3761454	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	39069181	rs3747174	T	C	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	39079148	.	G	GGGGC	286	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=9;HapScore=2;MGOF=14;MMLQ=17;MQ=60.26;NF=1;NR=9;PP=286;QD=29.8;SC=GCCGGGGGTCGGGGGGGGGGT;SbPval=0.8;Source=Platypus;TC=13;TCF=2;TCR=11;TR=10;WE=39079156;WS=39079138;set=Platypus	GT:AD:AF:DP	1/1:3,10:0.77:13
chr22	39079151	rs59060602	G	GC	1208.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.56;QD=41.68;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	39079964	rs5750668	T	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	39126508	rs909564	A	G	12553.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.459;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=1.472;SOR=0.382;set=HC	GT:AD:AF:DP	1/1:1,492:1.00:493
chr22	39134715	rs1062687	T	C	7168.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr22	39137513	rs139004902	C	T	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	39141600	rs138712	G	A	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	39148483	rs2072798	G	A	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	39150543	rs2072794	G	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	39151057	rs470107	CG	C	2608.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	39222652	rs5757299	G	A	6808.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	39224248	rs5757300	T	C	13561.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,539:1.00:539
chr22	39239172	rs3747176	C	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	39355415	rs1977069	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	39355717	rs5750717	G	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	39357581	rs72487648	C	T	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.90;QD=24.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	39381826	rs2076109	A	G	13058.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr22	39381999	rs2076111	T	C	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.36;QD=26.49;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr22	39382079	rs5995649	C	A	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr22	39387285	rs141343194	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.00;MQRankSum=0.637;QD=13.54;ReadPosRankSum=-0.712;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr22	39387558	rs1065184	C	T	9618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=3.553;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=8.528;QD=18.64;ReadPosRankSum=8.026;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:85,431:0.84:516
chr22	39387655	rs34124580	G	T	3183.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:91,146:0.62:237
chr22	39419112	rs71326743	CTATT	C	856.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.84;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	39421607	rs190831871	C	A	7024.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr22	39440149	rs5750728	C	T	10351.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr22	39441096	rs2020390	G	T	5085.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.22;MQRankSum=-1.211;QD=28.10;ReadPosRankSum=1.695;SOR=0.443;set=HC	GT:AD:AF:DP	1/1:1,180:0.99:181
chr22	39441203	rs4821862	C	T	6144.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.85;MQRankSum=6.174;QD=24.58;ReadPosRankSum=2.734;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:4,246:0.98:250
chr22	39445380	rs2014881	G	A	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	39445554	rs2076101	G	A	6680.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr22	39448711	rs6001402	C	A	3590.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	39448750	rs5757451	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr22	39477123	rs5757465	T	C	13081.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=25.50;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr22	39497509	rs139300	A	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	39498373	rs139304	TA	T	1271.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	39629329	rs11704525	C	A	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr22	39636899	.	GTC	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=61.95;MQRankSum=-1.695;QD=0.89;ReadPosRankSum=-1.125;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chr22	39636928	rs5757575	A	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.15;QD=35.76;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	39636928	.	ACA	GCG	288	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=0.5003;HP=2;HapScore=2;MGOF=13;MMLQ=20;MQ=62.53;NF=10;NR=14;PP=288;QD=14.2278281193;SC=TCAGATGCGCACACACACACA;SbPval=0.34;Source=Platypus;TC=29;TCF=10;TCR=19;TR=24;WE=39636955;WS=39636918;set=Platypus	GT:AD:AF:DP	1/1:5,24:0.83:29
chr22	39636930	rs5757576	A	G	991.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.243;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=12.119;MLEAC=2;MLEAF=1.000;MQ=63.32;MQRankSum=1.550;QD=18.71;ReadPosRankSum=-1.858;SOR=0.032;set=HC	GT:AD:AF:DP	1/1:5,48:0.91:53
chr22	39636944	rs138673005	ACACT	A	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	39639853	rs1800817	G	T	12966.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.003;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=-0.762;SOR=0.417;set=HC	GT:AD:AF:DP	1/1:1,506:1.00:507
chr22	39709776	rs137620	T	C	13303.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr22	39710244	rs137621	G	A	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	39712981	rs137623	A	G	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr22	39713105	rs470081	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	39714490	rs6509	C	T	10238.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr22	39714908	rs137625	A	G	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	39715140	rs470082	C	T	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr22	39746186	rs142884306	ACCGACC	A	4490.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=44.03;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	39770597	rs4821888	A	G	12192.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:1,466:1.00:467
chr22	39770780	rs4820377	G	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	39777822	rs149306472	C	CCAA	42735.73	.	AC=2;AF=1.00;AN=2;DB;DP=1005;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=45.03;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,949:1.00:949
chr22	39795683	rs4821892	G	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	39812986	rs6001585	C	A	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	39832306	.	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.751;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr22	39882149	.	A	ATT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.637;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr22	39994105	rs760546	A	G	8816.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:1,353:1.00:354
chr22	40053682	rs377591312	TGTGAGGGGCTAAGTGAA	T	6527.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	40054428	rs136848	T	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	40054948	rs5757761	T	C	8742.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.49;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,343:1.00:343
chr22	40055304	rs136850	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	40055896	rs136851	T	C	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	40057273	rs136852	T	C	6589.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr22	40058186	rs136853	A	G	21574.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.278;ClippingRankSum=0.000;DB;DP=840;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.87;ReadPosRankSum=0.421;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:1,833:1.00:834
chr22	40058999	rs136854	C	T	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	40069174	rs183747299	G	A	8635.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr22	40075013	rs116045515	G	A	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	40075473	rs7288746	T	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	40081661	rs113365626	T	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	40161181	.	TTG	T	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.668;QD=2.70;ReadPosRankSum=-0.915;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr22	40271614	rs137945	C	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	40364415	rs2267423	A	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr22	40545595	rs6001804	A	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.97;QD=24.47;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	40545797	rs34190441	T	TA	202.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	40545998	rs35899845	C	CA	1633.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	40546041	rs35629137	C	CA	2237.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	40546153	rs5995826	G	A	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=26.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	40574170	rs6001827	T	A	6105.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr22	40673999	rs2413621	C	T	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	40677001	rs929070	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	40681788	rs6001862	C	T	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	40697377	rs5995843	A	G	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	40708679	rs2072858	T	C	8830.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr22	40742686	rs2228415	C	T	14475.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,551:1.00:551
chr22	40757228	rs8135371	A	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	40803186	rs2018393	G	T	7217.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr22	40814500	rs878756	T	C	8474.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr22	40814594	rs56211152	C	T	8906.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr22	40816430	rs148478967	C	T	10204.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr22	40816749	rs2072856	G	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	41172351	rs6002128	A	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	41194909	rs138306	C	T	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	41195142	.	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.070;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:137,25:0.15:162
chr22	41195191	rs113851841	A	AGTGGCATGGTT	2026.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	41209874	rs138322	G	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	41210063	rs138323	T	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	41215416	.	CGG	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=-0.000;DP=42;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-0.000;QD=6.77;ReadPosRankSum=0.825;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr22	41227086	rs138335	C	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	41256660	rs202011264	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=2.012;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr22	41256802	rs103197	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.88;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	41310148	rs35631136	G	GA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.760;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr22	41537234	rs6002267	G	T	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	41545024	rs71761046	G	GT	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.994;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=8.009;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=3.928;QD=2.49;ReadPosRankSum=2.906;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:121,47:0.28:168
chr22	41604353	rs139431	C	T	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.21;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	41604557	rs139432	G	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	41605635	rs139437	T	C	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	41605639	rs139438	C	T	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	41606030	rs139439	A	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	41609859	rs139450	T	C	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	41610024	rs139451	G	A	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	41612965	rs85220	T	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	41617160	rs139471	T	TG	1561.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	41617318	rs139472	G	C	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr22	41635425	rs139495	C	T	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr22	41645500	rs139500	TG	T	11099.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr22	41645757	rs71948	C	G	7317.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr22	41652345	rs470112	C	G	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	41652733	rs139509	G	A	9845.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr22	41660964	rs139520	A	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	41676559	rs35821769	C	CAGCT	806.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=42.46;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	41739370	rs1883828	T	C	9882.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr22	41829794	rs6609	C	G	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	41833116	rs202641	C	T	29266.77	.	AC=2;AF=1.00;AN=2;DB;DP=1128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.695;set=HC	GT:AD:AF:DP	1/1:0,1107:1.00:1107
chr22	41864216	rs505533	A	C	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	41911525	rs1799932	C	T	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	42000254	.	CTT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=1.058;SOR=1.919;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr22	42059768	rs132788	G	T	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	42076381	rs5758405	C	A	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	42089623	rs739134	T	C	18063.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=713;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=0.462;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:2,697:1.00:699
chr22	42109917	rs5758431	A	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	42111896	rs9306355	A	T	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	42139054	rs5751147	G	A	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	42139078	rs5751148	A	G	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	42140792	rs56663311	G	A	511.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.09;QD=46.52;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	42140793	rs62236786	C	T	511.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.34;QD=42.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	42140798	rs56138604	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.34;QD=46.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	42140800	rs58323591	C	CTTTG	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.55;QD=42.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	42148467	rs715498	G	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	42150146	rs1534932	C	T	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	42159229	rs2050033	G	T	7830.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=2.207;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr22	42189810	rs199838109	A	AT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.205;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr22	42190309	rs738247	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	42271363	rs2229439	G	A	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	42354487	rs376900632	GGA	G	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.853;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:67,14:0.17:81
chr22	42415224	rs11389397	C	CA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=2.490;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:73,20:0.22:93
chr22	42464570	rs147528904	G	A	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	42473860	rs1807493	C	G	5189.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr22	42474138	rs1807494	C	G	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	42475703	rs2269524	T	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	42486723	rs1801311	G	A	26861.77	.	AC=2;AF=1.00;AN=2;DB;DP=1070;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,1049:1.00:1049
chr22	42537023	rs2860372	T	C	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=27.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	42538876	rs3020732	A	T	25605.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,588:1.00:588
chr22	42538885	rs2743460	G	T	25595.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,577:1.00:577
chr22	42575496	rs57857271	CA	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.253;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr22	42606257	rs2070116	C	T	8594.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr22	42781071	rs12484478	G	A	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	42912501	rs5751292	A	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	42993786	rs72451410	CT	C	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.204;QD=2.17;ReadPosRankSum=2.142;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:89,47:0.35:136
chr22	43024410	rs137139	C	T	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	43035849	.	C	CT	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.489;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr22	43088971	rs9623659	C	T	11388.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:1,440:1.00:441
chr22	43089055	rs6002904	G	C	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr22	43089849	rs11541159	T	C	12303.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:3,500:0.99:503
chr22	43195147	rs1128013	A	G	13067.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:1,510:1.00:511
chr22	43203137	rs738535	C	T	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	43206950	rs1018448	A	C	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr22	43213631	rs147339109	C	CA	2184.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.85;ReadPosRankSum=2.270;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:2,98:0.98:100
chr22	43218463	rs5758957	C	T	7524.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr22	43219836	rs5751378	C	G	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	43223095	rs10654612	C	CAT	1420.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;QD=43.05;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	43227795	.	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.180;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr22	43230140	rs2273142	C	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	43253986	rs3046483	C	CTT	1376.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	43267336	rs3842298	T	TC	5811.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	43272085	rs5751396	G	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	43272792	rs5751397	C	T	4379.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	43272830	rs35041824	C	CAG	7667.73	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:9,303:0.97:312
chr22	43275250	rs2073199	G	A	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	43278162	rs4822217	T	C	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr22	43278220	rs2899365	C	T	8891.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr22	43280650	rs2273143	T	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	43286876	rs5759012	A	G	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	43289473	rs5759013	G	A	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	43435668	rs2072883	G	A	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	43442599	rs5759111	T	C	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	43455531	rs1132079	C	T	9936.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.88;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr22	43455665	rs5759126	A	G	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	43459846	rs1052160	G	A	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr22	43538802	.	C	CA	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=5.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.474;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr22	43555194	rs3937387	C	G	13207.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr22	43572308	rs56293701	T	TG	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.470;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:107,21:0.16:128
chr22	43575616	rs4822261	G	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	43575774	rs138945	A	C	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr22	43576904	rs2071723	G	A	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	43606143	rs5759217	C	T	11291.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr22	43610207	rs138993	A	G	12976.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=2.403;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:4,510:0.99:514
chr22	43618632	rs139005	CG	C	2961.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	43619200	rs6003114	G	A	7314.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr22	43619404	rs6003115	C	G	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	43623353	rs129414	G	A	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	43623395	rs129415	C	G	8582.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr22	43625225	rs34045808	G	T	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	43739204	.	G	A	910.77	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	43739286	.	T	TGGGCGTGC	770.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.82;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	43739395	rs7286392	A	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	43814244	rs5759334	C	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	43930501	.	G	GA	431.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.72;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	43976396	rs9614382	G	A	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	43976675	rs4823114	G	A	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	44028174	.	C	CT	30.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=0.489;QD=3.85;ReadPosRankSum=-0.732;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr22	44083442	rs5764214	T	C	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	44112845	rs5764234	C	T	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	44223635	rs71313366	C	CCACACA,CCACA	772.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=24;set=Intersection	GT:AF:DP	1/1:1.00:18
chr22	44229492	rs138069	G	C	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	44229508	rs138070	G	A	7973.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	44234933	rs138073	C	T	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	44236039	rs9625949	G	A	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	44258003	rs189562377	A	G	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	44258014	rs181826322	C	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	44258311	.	A	ACGCGCC	261.80	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	44322970	rs2076212	G	T	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	44323074	rs139047	G	A	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	44324676	rs139051	A	G	7850.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=25.74;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	44368728	.	AT	A	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.933;QD=0.40;ReadPosRankSum=1.081;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:165,40:0.20:205
chr22	44385219	rs71648339	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.857;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr22	44420118	rs111806469	C	G	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	44420156	rs112388263	T	A	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	44489868	rs1983609	T	C	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,224:1.00:225
chr22	44489896	rs738479	T	C	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	44514809	rs5764541	C	T	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	44515806	rs761166	G	C	61.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	44535904	rs11270419	G	GCTTTCTGGCTGGCTCTGTCCCTCATCCTCCA	1140.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=95.06;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	44559645	rs139079	C	T	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	44559842	rs139081	A	G	11065.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr22	44564297	rs139095	A	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	44582499	rs79478	T	C	17060.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,671:1.00:671
chr22	44589857	rs139142	T	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	44594476	rs139151	T	C	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr22	44594739	rs142865703	T	TATCC	1241.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:3,30:0.91:33
chr22	44601499	rs139184	C	G	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	44602229	rs139186	A	C	12633.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr22	44681612	rs135388	A	G	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	44965320	rs138593	G	A	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	44967767	rs138596	C	G	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	45075738	rs763213	T	C	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	45182157	rs9614930	C	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=1.880;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	45182165	rs9614931	C	A	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.36;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	45182194	rs55667614	G	A	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	45182205	rs60777058	A	T	3856.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=37.44;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	45182215	rs58438798	T	C	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=37.42;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	45182321	rs67401095	ATCT	A	12589.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr22	45182565	rs9614932	C	T	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	45198009	rs2239813	A	G	13416.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,517:1.00:517
chr22	45204519	rs145924864	C	CTT	2140.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.86;QD=44.60;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	45204555	rs111568032	C	T	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=24.32;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	45205210	rs76583505	C	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	45218223	rs136662	C	T	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr22	45243780	rs9626578	G	A	7066.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr22	45244001	rs9626251	C	T	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	45255727	rs2349855	G	C	7720.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr22	45255779	rs2882262	A	G	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr22	45258495	rs8777	A	G	11640.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr22	45287420	rs6007370	A	G	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	45309653	rs3213527	C	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	45312010	rs76655990	G	A	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	45316507	rs4823420	T	A	1638.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	45566759	rs12160392	C	T	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	45574919	rs12160308	C	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	45579422	rs6006950	A	G	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	45593242	rs9626652	G	C	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	45593765	rs73434134	G	A	16919.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr22	45595833	rs12170881	G	C	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr22	45595872	rs12169667	C	A	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	45599099	rs2840210	A	G	5335.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr22	45599932	rs111302438	C	T	12093.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.307;set=HC	GT:AD:AF:DP	1/1:0,447:1.00:447
chr22	45680824	rs2255432	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.61;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	45680870	rs116162068	G	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	45682975	rs2673087	A	G	211.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	45683304	rs1057353	G	C	10118.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr22	45685002	rs1135360	A	G	9906.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr22	45718041	rs1473953	A	G	6501.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	45718922	.	C	CTGTGTG	257.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.64;ReadPosRankSum=0.524;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr22	45723696	rs6007591	G	C	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	45723807	rs11556482	G	C	10627.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr22	45723842	rs17851057	G	A	11825.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=25.60;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr22	45724208	rs374842461	G	T	52.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.84;QD=17.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	45726345	rs7285172	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	45728370	rs6007594	G	A	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	45728632	rs111420586	C	CTT	703.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=24.27;ReadPosRankSum=-0.796;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr22	45731182	rs738176	C	T	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	45736153	rs3827393	G	A	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	45736434	rs1056322	C	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	45748284	rs11375006	C	CT	3841.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=36.94;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	45757987	rs5764704	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	45767455	rs136569	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	45767946	rs136572	G	A	84.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	45779335	rs136585	A	G	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	45779553	rs11090629	C	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	45782646	rs136591	C	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	45782903	rs6007010	T	C	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr22	45785840	rs8138001	A	G	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	45789642	rs136603	A	C	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	45792478	rs143576672	T	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	45794925	rs79154	C	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	45809244	rs150726314	CG	C	1034.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	45809624	rs2272804	C	A	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	45810278	rs59404993	A	AC	9045.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.07;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr22	45810368	rs72109388	C	CT	2164.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=1.307;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:14,116:0.89:130
chr22	45813433	rs11320557	AT	A	898.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	45821887	rs1022477	G	A	14128.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr22	45821956	rs1022478	C	G	8520.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr22	45822003	rs142235177	A	G	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr22	45822161	rs5765345	C	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	45826880	rs2072770	G	A	10333.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,388:1.00:388
chr22	45827020	rs5765352	G	A	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	45828091	rs35724408	CA	C	106.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=13.34;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	45918877	rs2018279	A	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	45923827	rs136730	A	G	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:1,218:1.00:219
chr22	45924001	rs136731	T	TG	578.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;MQ=60.45;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	45929190	rs2071936	C	T	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	45929577	rs105199	T	C	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.233;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	45929594	rs3216851	TG	T	10227.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=35.51;SOR=1.239;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr22	45931262	rs2071938	C	T	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	45954029	rs2097484	G	A	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	45961213	rs1118	C	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	45961904	rs1985671	G	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	46323342	rs4072176	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	46346101	rs144607292	C	A	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	46505986	rs2474020	T	C	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	46594555	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.30;ReadPosRankSum=-1.692;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr22	46654812	rs189789939	T	C	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	46674603	rs135170	C	T	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	46677607	rs130642	T	C	8050.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr22	46679850	rs200400952	C	CT	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=1.237;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:53,31:0.37:84
chr22	46739096	.	C	CT	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.325;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr22	46765181	rs11273699	G	GTCAGGTCGCCGAC	14231.73	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=45.61;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr22	46858687	rs5768788	G	A	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	46929359	rs5767248	C	G	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	46929692	rs4823561	A	G	13579.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:1,530:1.00:531
chr22	46930107	rs8141744	C	T	15244.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr22	46931077	rs4823850	G	C	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr22	46931793	rs1009154	G	C	18166.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,688:1.00:688
chr22	46931838	rs1009155	G	A	20935.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,802:1.00:802
chr22	47057076	rs34926187	G	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	47058992	rs2542040	T	C	7148.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr22	47059597	rs2542035	A	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	47062894	rs6008947	G	T	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	47064164	rs2748338	C	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	47064665	rs9616088	C	T	6666.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.75;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr22	47066804	rs150662796	C	CT	1360.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	47066920	rs16995541	T	C	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	47072477	rs2236028	G	A	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr22	47083010	rs2542014	T	C	16266.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.95;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr22	47083010	.	TGT	CGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.64;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=19;MQ=60.0;NF=104;NR=83;PP=2947;QD=20;SC=TTTCCCAGTTTGTGAGCAGGA;SbPval=0.56;Source=Platypus;TC=193;TCF=107;TCR=86;TR=187;WE=47083020;WS=47083000;set=Platypus	GT:AD:AF:DP	1/1:6,187:0.97:193
chr22	47083012	rs2748349	T	A	16266.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr22	47083172	.	CTGGACAGGGGCTGCAGTAAACCCCACGTGTCCCTCACTCAAAGCTGGCCCTGAGCACCGCTCT	C	1917.73	.	AC=2;AF=1.00;AN=2;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=20.19;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	47091321	rs135676	C	T	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	47097450	rs135688	C	T	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	47134147	rs3747262	G	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	47185265	rs801606	G	T	5963.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	47274638	rs131869	C	T	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	47311404	rs738935	A	T	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr22	47370033	rs73186541	G	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr22	47370060	rs4436	A	G	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	47393400	rs3747263	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	47857537	rs130877	T	C	10592.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr22	47857551	rs130878	T	G	11348.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr22	47857576	rs130879	A	G	10901.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	47857645	.	G	GT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.742;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr22	47857658	rs130880	A	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=9.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=2.001;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:22,52:0.70:74
chr22	48023241	rs8137874	G	T	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	48940553	rs4823540	T	C	11829.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr22	48940644	rs9615919	C	T	7929.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr22	48942566	rs739155	G	A	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	48972204	rs139257794	C	T	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	48972536	rs147114256	C	G	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	49042294	rs9617472	C	T	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	49103380	rs130147	A	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	49103396	rs5771990	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	49103660	rs132234	T	C	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	49575789	rs12627839	T	C	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	49575942	rs73171115	G	A	16293.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,641:1.00:641
chr22	49834624	rs11705513	A	G	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	49834747	rs1016809	C	T	20845.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,801:1.00:801
chr22	49937236	rs28546641	C	T	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	50277835	rs910796	T	C	11364.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr22	50277883	rs910797	A	G	13710.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr22	50278438	rs910798	A	G	13347.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:2,523:1.00:525
chr22	50278568	rs910799	A	G	7433.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr22	50278642	rs910800	C	T	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	50280136	rs5770755	T	C	16565.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:1,648:1.00:649
chr22	50354819	rs11541025	C	A	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,172:0.99:173
chr22	50435480	rs5771069	A	G	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	50436846	rs79102851	G	GTCC	3552.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=43.86;SOR=1.759;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	50439430	rs137845	A	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	50439755	rs137846	G	GCA	1027.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	50468907	rs738333	C	G	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	50471620	rs5845912	AC	A	5080.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	50479856	rs9617137	A	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	50480108	rs9628315	C	T	10825.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr22	50483850	rs8138121	T	C	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr22	50483889	rs8137790	A	G	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	50483926	rs8138277	T	C	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	50485793	rs137906	T	C	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	50487567	rs137911	T	C	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	50488804	rs137913	CT	C	182.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	50492952	rs12166717	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	50492970	rs12166094	C	T	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.06;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	50493062	rs17013085	T	C	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	50499964	rs137919	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	50500263	rs75152548	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	50502436	rs114282486	T	C	886.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.815;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=0.115;QD=25.34;ReadPosRankSum=-0.743;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr22	50502469	.	A	AGCACCCCCACCCCACAGGCCACTCACCTCCCCG	3918.73	.	AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.48;QD=64.24;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	50502491	rs11568188	T	C	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.56;QD=46.67;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	50502526	rs11568187	A	G	8648.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.93;QD=46.00;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	50502544	rs11568186	G	A	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.21;QD=41.28;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr22	50502636	rs11568185	G	A	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	50502650	rs11568184	G	A	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	50502766	rs11568183	C	T	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	50506810	rs5771349	A	G	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	50507019	rs11568179	G	A	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	50507064	rs75474964	G	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	50507094	rs111258391	T	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	50508895	rs2076134	A	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	50508895	.	AGG	GGT	397	.	AC=2;AF=1.00;AN=2;BRF=0.57;FR=1.0000;HP=2;HapScore=2;MGOF=9;MMLQ=26;MQ=60.0;NF=17;NR=10;PP=397;QD=16.6839953653;SC=AGGGAGGGCTAGGCCAGGCCC;SbPval=0.65;Source=Platypus;TC=28;TCF=17;TCR=11;TR=27;WE=50508905;WS=50508885;set=Platypus	GT:AD:AF:DP	1/1:1,27:0.96:28
chr22	50508897	rs2076135	G	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	50515270	rs6010164	T	C	7092.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	50515273	rs6010165	G	A	7044.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	50515843	rs6010260	C	A	5809.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.783;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.26;ReadPosRankSum=-0.219;SOR=0.237;set=HC	GT:AD:AF:DP	1/1:1,229:1.00:230
chr22	50518226	rs11568176	A	C	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	50518239	rs2235349	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	50518723	rs79301	A	G	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	50523417	rs11568171	G	A	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	50528496	.	C	CGGTG	1644.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	50528497	.	A	ACGGCG	1643.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.09;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	50528569	rs12628964	A	T	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	50528623	rs117477158	C	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	50529134	rs8142824	T	C	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	50529146	rs8140485	C	T	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.71;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	50529146	.	CCC	TCG	1131	.	AC=2;AF=1.00;AN=2;BRF=0.53;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=23;MQ=60.0;NF=9;NR=39;PP=1131;QD=24.6764140596;SC=GCTCTTGTTGCCCAGGCTGGA;SbPval=0.47;Source=Platypus;TC=51;TCF=9;TCR=42;TR=48;WE=50529156;WS=50529124;set=Platypus	GT:AD:AF:DP	1/1:3,48:0.94:51
chr22	50529148	rs8140486	C	G	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.38;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	50530501	rs9617066	A	T	11734.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,460:1.00:460
chr22	50538174	rs9617023	G	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	50546666	rs3810971	C	T	10901.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr22	50546844	rs3810972	T	A	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	50546868	rs3810973	G	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	50546900	rs3810974	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	50546971	rs3810975	A	G	253.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	50547247	rs138217	A	G	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr22	50548099	rs71316996	CA	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.631;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr22	50548214	rs11703494	C	T	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	50548270	rs200470549	T	TA	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=0.062;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr22	50548277	rs13055849	T	A	775.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.51;ReadPosRankSum=0.038;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr22	50552278	rs4838839	C	T	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	50552736	rs4240525	T	C	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	50553148	rs9617079	C	T	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	50553514	rs742183	A	T	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	50555486	rs126241	G	C	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	50555619	rs138222	C	T	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	50564413	rs138242	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=46.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	50564419	rs9617088	C	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=48.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	50564442	rs9617034	C	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=34.14;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	50564510	rs9617089	T	C	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.72;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	50564618	rs3830747	A	AT	3465.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.214;QD=24.76;ReadPosRankSum=-0.220;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:2,138:0.99:140
chr22	50566781	rs4838809	T	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	50566835	rs13055917	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	50566969	rs199731305	CTTTTTTTTTTT	C	955.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.23;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	50572473	rs2340601	G	A	10090.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr22	50573081	rs3736690	T	G	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr22	50581707	rs2272835	T	C	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	50582626	rs2272837	A	G	6955.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr22	50584201	rs2272838	A	C	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	50585442	rs4838811	C	G	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	50585595	rs4838851	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr22	50585604	.	GGCAGGCCGCTCTCTCAGAGGCACTCTGTGCAGAAGCAGGGAGGGTGCT	G	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=4.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.48;ReadPosRankSum=-3.923;SOR=1.546;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr22	50585626	.	A	G	243	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=2;MGOF=24;MMLQ=23;MQ=60.0;NF=1;NR=10;PP=243;QD=25.2519284134;SC=TCTCAGAGGCACTCTGTGCAG;SbPval=0.64;Source=Platypus;TC=11;TCF=1;TCR=10;TR=11;WE=50585634;WS=50585616;set=Platypus	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	50591678	rs77106439	G	A	11353.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.937;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=-1.482;SOR=0.244;set=HC	GT:AD:AF:DP	1/1:1,445:1.00:446
chr22	50598030	rs35222089	C	CA	106.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.63;ReadPosRankSum=-2.029;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr22	50616656	rs7286904	T	C	5926.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.640;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.49;ReadPosRankSum=0.600;SOR=0.262;set=HC	GT:AD:AF:DP	1/1:1,241:1.00:242
chr22	50616806	rs5771206	A	G	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	50633048	rs730559	T	G	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	50635848	rs2272844	C	G	20208.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,769:1.00:769
chr22	50637597	rs8238	G	C	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr22	50646859	rs58098510	CA	C	632.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=1.692;SOR=0.349;set=HC	GT:AD:AF:DP	1/1:5,46:0.90:51
chr22	50646936	rs5771102	G	C	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	50648577	rs2294401	C	T	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	50655098	rs2272851	A	G	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	50656053	rs2281116	T	A	19081.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:0,730:1.00:730
chr22	50656096	rs2038050	A	G	19549.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,752:1.00:752
chr22	50657010	rs4838864	C	G	15729.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr22	50658053	rs6537642	A	G	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr22	50658424	rs11703226	T	C	11993.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr22	50658494	rs5771241	C	A	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr22	50658698	rs5771107	T	A	26835.77	.	AC=2;AF=1.00;AN=2;DB;DP=1065;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,1048:1.00:1048
chr22	50664612	rs4838865	A	G	15946.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr22	50699487	rs2272856	G	C	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=42.69;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	50699668	rs2272857	A	G	11051.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr22	50703572	rs10626765	C	CAG	9409.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr22	50704661	rs2076139	T	C	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr22	50705059	rs742185	A	G	32225.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=1245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.33;ReadPosRankSum=-0.152;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:4,1220:1.00:1224
chr22	50705466	rs760748	A	G	14696.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:4,571:0.99:575
chr22	50708731	rs9617050	A	G	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr22	50713866	rs1042979	G	C	7097.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr22	50714289	rs5771118	T	C	9808.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr22	50715029	rs5771119	T	C	7733.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr22	50715973	rs28637964	G	T	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	50716167	rs1127000	G	A	11151.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr22	50716480	rs117265627	C	T	10288.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr22	50717129	rs28718510	T	G	7484.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr22	50717547	rs28633213	T	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	50718397	rs28611220	A	G	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr22	50719165	rs28540713	T	C	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	50719251	rs11547734	A	G	8586.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr22	50719976	rs111925803	C	T	15675.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,594:1.00:594
chr22	50720622	rs11547728	C	T	15891.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr22	50722134	rs11547731	T	C	22262.77	.	AC=2;AF=1.00;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	1/1:0,876:1.00:876
chr22	50722408	rs79966207	T	C	10398.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr22	50724172	rs56015849	A	AC	1573.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.29;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	50724190	rs28604596	G	T	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	50724733	rs55709850	G	T	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	50727921	rs28578714	T	C	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr22	50728062	rs28379706	T	C	11066.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr22	50757348	rs62241232	G	A	8167.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr22	50853132	rs60172550	TC	T	1541.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	50853134	rs115621755	C	T	1550.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	50854317	rs6520165	T	C	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	50857140	rs7293044	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.56;ReadPosRankSum=0.158;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr22	50860565	rs9616844	G	A	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	50870620	rs2076712	G	T	7716.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr22	50876077	rs9306550	T	C	7061.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	50876235	rs5770779	T	C	20397.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:2,803:1.00:805
chr22	50876357	rs5770890	C	G	10538.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr22	50877166	rs4824131	G	C	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr22	50879447	rs2273260	T	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	50882752	rs59017944	CT	C	1871.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:14,117:0.89:131
chr22	50885775	rs1053744	A	G	25394.77	.	AC=2;AF=1.00;AN=2;DB;DP=1004;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.73;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,987:1.00:987
chr22	50894849	rs2076713	G	A	12674.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr22	50895133	rs4824117	A	G	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr22	50897868	rs2281439	G	A	5048.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	50899755	rs35628474	AG	A	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=4.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-0.424;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:74,33:0.31:107
chr22	50901259	rs9617014	G	C	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,244:1.00:245
chr22	50901534	rs5771039	A	G	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	50913182	rs149886696	C	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	50913394	rs373485644	CGCG	C	548.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	50913429	rs4824154	T	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	50921148	rs72438078	AACACTCGGGCCCCCGAAG	A	11815.73	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=44.76;SOR=1.277;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr22	50925672	rs2232878	T	C	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	50925997	rs3747273	C	A	6928.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr22	50927447	rs139170143	C	CGTCCCTCCT	11737.73	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr22	50928026	rs2232885	G	A	13040.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr22	50928083	rs201895334	G	A	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	50941985	rs6009975	T	C	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr22	50942121	rs13056405	C	T	5094.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.67;ReadPosRankSum=-1.480;SOR=0.443;set=HC	GT:AD:AF:DP	1/1:1,190:0.99:191
chr22	50942709	.	C	CCT	1487	.	AC=2;AF=1.00;AN=2;BRF=0.68;FR=1.0000;HP=5;HapScore=1;MGOF=32;MMLQ=18;MQ=59.99;NF=20;NR=10;PP=1487;QD=50.4666666667;SC=CCACACCCCCCGGTGCCCGGC;SbPval=0.57;Source=Platypus;TC=30;TCF=20;TCR=10;TR=30;WE=50942717;WS=50942699;set=Platypus	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	50943004	rs762671	C	A	25083.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,568:1.00:568
chr22	50943010	rs762670	G	A	25193.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,574:1.00:574
chr22	50943232	rs8136495	G	A	13452.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,531:1.00:531
chr22	50943423	rs762669	G	A	9812.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr22	50945256	rs131824	A	G	10540.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr22	50946710	.	G	A	2023.77	.	AC=2;AF=1.00;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	50946965	rs131823	T	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	50966197	rs56216853	CT	C	251.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.002;QD=3.81;ReadPosRankSum=-0.238;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:29,37:0.56:66
chr22	50968826	.	CAG	C	1027.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.408;QD=2.21;ReadPosRankSum=0.544;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:393,73:0.16:466
chr22	51042513	rs140511	C	CG	7925.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=40.23;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	51113001	.	CCG	C	562.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=37.52;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	51113801	.	C	CTGTGTGTGTGTGTGTG	661.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;QD=41.36;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	51117137	rs9616914	G	A	13371.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr22	51117580	rs9616915	T	C	14608.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr22	51133518	rs13055562	G	A	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.264;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	51135545	rs9616818	T	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	51137249	rs1557620	T	C	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:2,258:0.99:260
chr22	51144731	rs9968024	T	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	51169045	rs8140772	C	T	7721.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.288;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.40;ReadPosRankSum=1.554;SOR=0.272;set=HC	GT:AD:AF:DP	1/1:1,303:1.00:304
chr22	51171667	rs41281537	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	51178607	rs6010067	G	C	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	51179000	rs2283675	C	A	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	51183017	rs58651371	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	51183255	rs5771002	A	G	12131.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.95;QD=25.70;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chrX	2715425	rs4484858	A	G	7651.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.849;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=3.082;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=0.695;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:1,306:1.00:307
chrX	2724760	rs3749988	T	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=27.54;SOR=1.761;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	2726396	rs6567645	A	G	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chrX	2729540	rs11439714	T	TA	1358.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=0.316;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:15,79:0.84:94
chrX	2732166	rs5939337	A	T	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	2732356	rs34201156	C	CT	1584.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:20,88:0.81:108
chrX	2748051	rs57068689	T	C	7186.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=26.42;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chrX	2748253	rs6642032	G	C	9915.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chrX	2748292	rs6641656	C	G	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chrX	2774478	rs5939132	A	G	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chrX	2777985	rs2306734	C	T	11186.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chrX	2779570	rs2306735	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	2794074	.	CTTTTTTTT	C	713.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.65;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	2816082	rs5939390	T	C	5352.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chrX	2822944	.	C	CT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=2.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.624;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:140,46:0.25:186
chrX	2827724	.	CAA	C	37.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=9.38;ReadPosRankSum=0.319;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chrX	2827794	rs61456366	T	TA	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.049;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.388;QD=3.49;ReadPosRankSum=-0.041;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:59,30:0.34:89
chrX	2832661	rs111318153	A	T	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=12.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.863;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:85,18:0.17:103
chrX	2832668	rs139484145	A	G	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=10.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.144;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:95,20:0.17:115
chrX	2832696	rs113031742	T	C	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=5.464;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.658;QD=2.12;ReadPosRankSum=0.736;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:181,38:0.17:219
chrX	2832708	rs112408163	G	T	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=6.393;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.653;QD=4.67;ReadPosRankSum=1.713;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:198,41:0.17:239
chrX	2832715	rs73632953	T	C	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.644;QD=4.23;ReadPosRankSum=2.346;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:213,43:0.17:256
chrX	2832742	rs211648	G	C	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chrX	2832771	rs78142040	C	T	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.158;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.160;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:226,58:0.20:284
chrX	2832787	rs73632954	A	G	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=1.063;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:204,49:0.19:253
chrX	2832860	rs73632955	G	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chrX	2832871	rs115343387	A	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chrX	2832880	rs201839082	A	AAT	498.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chrX	2832920	rs200436106	T	TTA	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chrX	2832928	rs373093086	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.513;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=1.754;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chrX	2832931	rs377295657	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.007;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=1.946;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chrX	2832937	rs370694965	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.713;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.925;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chrX	2833486	rs371305173	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.587;QD=1.58;ReadPosRankSum=0.657;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:36,5:0.12:41
chrX	2833489	.	C	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=4.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.020;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chrX	2833506	rs211649	G	C	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:8,42:0.84:50
chrX	2833507	rs73632956	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.506;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chrX	2833533	rs369423737	GTTACGCCC	G	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.882;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:78,15:0.16:93
chrX	2833551	rs114724695	A	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.226;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:83,18:0.18:101
chrX	2833552	rs115030126	C	G	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.008;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:85,19:0.18:104
chrX	2833580	rs112594989	A	G	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-2.239;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:134,39:0.23:173
chrX	2833605	rs111939179	C	T	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.239;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:225,57:0.20:282
chrX	2833628	rs373216270	A	C	1981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=1.704;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:265,67:0.20:332
chrX	2833631	rs377542415	A	G	2050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=1.663;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:271,69:0.20:340
chrX	2833638	rs370769167	C	T	2146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=1.817;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:276,70:0.20:346
chrX	2833643	rs115332247	C	A	2220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=1.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=0.700;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:276,77:0.22:353
chrX	2833749	rs112924969	T	C	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=1.174;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:135,51:0.27:186
chrX	2833752	rs115063380	C	T	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.432;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:123,51:0.29:174
chrX	2833769	rs199688335	T	C	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=1.864;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:113,38:0.25:151
chrX	2833771	rs200976696	T	C	1226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.542;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=1.598;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:111,38:0.26:149
chrX	2833780	rs115636789	C	T	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-0.650;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:102,38:0.27:140
chrX	2833803	rs112173548	C	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:75,23:0.23:98
chrX	2833856	rs211650	T	C	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	2835831	rs75490251	C	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.676;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:92,24:0.21:116
chrX	2835863	rs78034736	G	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.776;QD=2.31;ReadPosRankSum=1.255;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:160,42:0.21:202
chrX	2835964	rs73632972	G	A	1380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.237;QD=3.59;ReadPosRankSum=-1.147;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:323,62:0.16:385
chrX	2835985	.	G	A	1188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.562;QD=3.13;ReadPosRankSum=1.016;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:328,52:0.14:380
chrX	2835989	rs143238998	A	C	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.602;QD=3.14;ReadPosRankSum=1.208;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:329,51:0.13:380
chrX	2835993	.	G	A	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.304;ClippingRankSum=0.000;DP=378;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.758;QD=2.95;ReadPosRankSum=2.322;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:330,47:0.12:377
chrX	2835995	rs150899882	C	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.302;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.719;QD=2.50;ReadPosRankSum=2.135;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:330,48:0.13:378
chrX	2835998	rs113556864	CCCACGCCGG	C	927.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.422;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.848;QD=2.36;ReadPosRankSum=2.458;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:346,47:0.12:393
chrX	2836037	rs211653	G	C	5604.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:46,240:0.84:286
chrX	2836041	rs67272620	A	T	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-1.262;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:238,45:0.16:283
chrX	2836047	rs67359049	C	T	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.356;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-1.695;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:234,45:0.16:279
chrX	2836060	rs113318393	G	A	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-2.629;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:213,41:0.16:254
chrX	2836084	rs73632973	C	G	834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.625;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:247,47:0.16:294
chrX	2836138	rs73632974	G	A	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.246;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:237,76:0.24:313
chrX	2836181	rs73632975	A	T	2474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.946;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=-0.306;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:198,77:0.28:275
chrX	2836184	rs73632976	C	T	2483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=1.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=-0.969;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:189,76:0.29:265
chrX	2836211	rs73632977	A	T	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.173;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:155,50:0.24:205
chrX	2836238	rs73632978	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=0.789;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chrX	2836283	rs115556892	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.116;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chrX	2836285	rs114112932	T	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.116;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chrX	2836293	rs138206271	A	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.764;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:25,4:0.14:29
chrX	2836317	rs113510342	G	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.145;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:19,3:0.14:22
chrX	2852951	rs11222	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	2856155	rs35143646	C	T	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chrX	2871011	rs211640	G	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	2877835	rs211636	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	2877876	rs211637	T	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	2986061	.	CT	C	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.040;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:66,39:0.37:105
chrX	2999141	rs5983001	G	A	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	3002219	rs5983002	T	C	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chrX	3002687	rs5983003	A	G	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	3007480	rs2290453	G	T	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.237;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chrX	3019114	rs11798999	G	A	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chrX	3021798	rs1869561	T	C	4075.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.005;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.41;ReadPosRankSum=0.966;SOR=0.253;set=HC	GT:AD:AF:DP	1/1:1,166:0.99:167
chrX	3030576	.	G	GGGTCCTAACGAGAAGAGATAATTACAATCAGGCTACCAGAGGAAGCCTTT	3220.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;MQRankSum=-0.268;QD=35.79;ReadPosRankSum=-1.246;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,88:0.98:90
chrX	3228411	rs1635233	G	A	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chrX	3228891	rs1635235	A	G	8931.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chrX	3235724	rs1635242	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	3238014	.	C	CA	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-1.092;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:94,31:0.25:125
chrX	3238167	rs1635245	T	G	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	3238733	rs1974522	G	A	8040.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chrX	3239545	rs1726199	C	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	3240343	rs1635246	G	A	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chrX	3241050	rs1635247	G	A	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chrX	3241256	rs5983119	T	C	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chrX	3241284	rs1635248	A	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chrX	3241317	rs1635249	T	C	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chrX	3241791	rs1635250	G	A	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	3530512	rs7066317	A	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=2.107;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	3539376	rs369523977	CA	C	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=5.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.595;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:127,55:0.30:182
chrX	3736489	rs1133336	C	T	6279.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chrX	5811807	rs61095217	A	G	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	5821786	rs7049300	G	A	7029.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chrX	5950747	.	G	A	731.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	6975752	rs5978220	G	T	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chrX	6975782	rs868756	C	G	5768.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chrX	6995315	rs2379206	C	T	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	6995537	rs3747390	C	A	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	7066051	rs1473666	A	C	11032.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chrX	8095173	rs1037521	T	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	8138080	rs1058239	G	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.21;QD=25.93;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	8138160	rs1058238	T	C	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.53;QD=43.73;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	8138165	rs1058237	C	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.48;QD=45.19;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	8138170	rs75657421	CT	GC	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=57.59;QD=55.36;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	8138182	rs41305169	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.13;QD=42.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	8270575	.	A	AAG	1040.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=49.56;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	8270615	.	A	AAGAAAGAAAGAAAG	7377.73	.	AC=2;AF=1.00;AN=2;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.29;QD=47.91;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chrX	8467201	.	A	AAG	257.75	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	8467239	rs372703313	AAAAG	A	815.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=40.79;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	8475724	rs202057305	C	CAAAGAAAGAAAAAG	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=187.87;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chrX	8500976	rs184173877	G	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	9000594	rs200449273	TG	T	553.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.837;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.392;QD=20.51;ReadPosRankSum=-0.644;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chrX	9859098	rs6640543	A	G	8585.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chrX	9859197	rs6640544	A	G	8347.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chrX	9863112	rs6530341	A	G	6835.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chrX	9866420	rs2073944	T	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	10085674	rs6530368	T	C	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chrX	10093298	rs2285493	T	C	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	10166198	rs2240019	A	C	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	10533042	rs5901437	TA	T	196.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.643;MLEAC=2;MLEAF=1.000;MQ=60.47;MQRankSum=0.530;QD=8.94;ReadPosRankSum=1.726;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chrX	11133069	rs2070163	C	T	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	11272836	.	CA	C	303.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=8.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-1.357;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chrX	11786839	rs2525868	T	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	11790964	rs181814642	G	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	12516777	.	C	CT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-0.218;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chrX	12628049	rs2304604	T	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	12633034	rs6654760	T	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	12722616	rs4469660	C	G	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	12809661	rs1731469	G	A	12014.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chrX	12837558	rs5935399	C	T	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	12838934	rs917580	A	G	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	12885578	rs2302267	T	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	12924697	rs3764879	C	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	12924826	rs3764880	A	G	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chrX	12937513	rs2159377	C	T	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chrX	12937804	rs5744080	C	T	8291.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chrX	12939112	rs2407992	G	C	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chrX	12939412	rs3747414	C	A	9457.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chrX	12939928	rs2109135	T	C	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chrX	12994867	.	CTT	C,CT	838.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=2.493;SOR=0.730;set=HC	GT:AD:AF:DP	1/2:19,38,28:0.45,0.33:85
chrX	13397003	rs112432165	C	T	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	13681115	rs2361159	C	T	5876.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chrX	13681638	rs5935649	C	T	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	13681679	rs5935650	G	T	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	13956661	rs3833419	CG	C	2913.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=33.49;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	14599230	rs2074210	A	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	14599572	rs2074211	A	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	14627020	.	G	A	763.77	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.82;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	14627022	rs35800731	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=0.581;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chrX	14708781	rs374170979	TTC	T	83.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:55,10:0.15:65
chrX	15262813	rs112382242	T	TG	625.52	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.543;QD=14.22;ReadPosRankSum=0.830;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chrX	15262814	rs28628283	T	A	1855.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;QD=37.12;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	15266819	rs1139868	C	T	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	15301533	rs5935925	G	A	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	15308163	rs6628942	A	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	15333842	rs4830529	T	A	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	15408419	rs2317326	T	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	15415583	rs8094	C	T	5888.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chrX	15415780	rs3829989	C	T	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	15552564	rs1877752	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.04;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	15552573	rs34879154	G	GA	166.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.84;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	15554602	rs28505625	T	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	15554625	rs61657459	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.506;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chrX	15596143	rs113691336	C	CATAAG	1145.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.74;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	15607650	rs971249	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	15706830	rs4060	C	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.95;QD=23.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	15711209	rs1996225	C	T	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=6.330;QD=18.22;ReadPosRankSum=-0.641;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,48:0.83:58
chrX	15792527	rs4364812	T	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.84;QD=24.92;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	15794815	rs5936050	G	A	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.52;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	15800600	rs4830548	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	15800751	rs1808	G	A	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	15808795	rs4830994	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	15817963	rs5980192	A	G	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	15822072	.	G	GA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=4.634;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.532;QD=2.43;ReadPosRankSum=-0.094;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chrX	15827524	rs5980193	T	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	16608793	rs1527805	G	A	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	16707832	.	AAC	A	34	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=23;MQ=60.0;NF=0;NR=3;PP=34;QD=16.3333333333;SC=ACACTGATATAACACACACAC;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=3;WE=16707841;WS=16707822;set=Platypus	GT:AD:AF:DP	0/1:13,3:0.19:16
chrX	16709626	rs5980322	G	A	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chrX	16762002	rs4830562	A	G	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	16887655	rs67984110	C	T	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chrX	17070688	rs933946	G	A	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	17080492	rs713355	G	A	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	17092152	rs1346246	G	T	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	17122102	rs714070	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	17157148	rs1946395	T	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	17705850	rs5901624	C	CT	11867.73	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=31.48;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,377:1.00:377
chrX	17819377	rs6527818	T	C	4986.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chrX	18671795	rs56396491	AT	GA	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	18779721	rs2269584	A	G	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	18824794	rs2239437	T	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	18844012	rs2273247	G	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	18929128	rs11291764	CT	C	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.710;QD=9.17;ReadPosRankSum=-3.329;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chrX	18970447	.	CAA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.87;ReadPosRankSum=-0.096;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chrX	19018109	.	A	AT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.623;QD=4.85;ReadPosRankSum=1.798;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chrX	19024426	rs368756788	TA	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.916;QD=0.99;ReadPosRankSum=-0.796;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chrX	19026343	.	A	ATT	55.25	.	AC=2;AF=1.00;AN=2;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	19037666	rs372068061	AT	A	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.612;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chrX	19041592	rs5909263	C	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.58;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	19058405	rs6633185	C	T	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	19086800	.	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.311;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chrX	19363863	rs71737866	TC	T	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.357;QD=6.46;ReadPosRankSum=1.356;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:44,35:0.44:79
chrX	19688957	.	CA	C	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.254;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:109,54:0.33:163
chrX	20284862	rs11276983	GGCGGCA	G	2156.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.452;MLEAC=2;MLEAF=1.000;MQ=62.76;MQRankSum=1.190;QD=36.55;ReadPosRankSum=-0.088;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:3,56:0.95:59
chrX	21544904	.	ATTG	A	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.355;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.559;QD=1.91;ReadPosRankSum=-0.624;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:70,11:0.14:81
chrX	21613200	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=0.272;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chrX	21861434	rs3213451	A	G	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chrX	21874560	rs730678	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	21875821	rs11339991	TA	T	252.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	21896913	rs3752405	A	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	21985464	rs3747276	C	T	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	21990455	rs7051872	G	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	23682589	rs4828890	T	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	23682877	rs477914	T	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	23682976	rs476316	A	G	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	23685964	rs496067	T	C	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chrX	23689636	rs513572	AT	TC	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chrX	23697485	rs795493	G	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	23700473	rs552105	G	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	23700693	rs795489	A	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	23701662	rs2665364	G	A	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	23723261	rs2270142	T	C	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	23739857	rs5970601	A	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	23748542	.	T	C	696.77	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	23801593	rs3764885	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	23801702	rs3764884	G	C	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	23858338	rs41305191	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	23928489	rs2707164	C	T	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	23934202	rs2520230	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	23945611	rs2707144	G	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	24007151	rs5925972	A	G	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	24075862	rs16997659	A	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	24191872	.	AT	A	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.112;QD=3.19;ReadPosRankSum=1.434;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chrX	24381387	rs1207577	G	C	6702.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chrX	24382373	.	TTGCTGCTGCTGCTGC	T,TTGC	2997	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.61;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=24;MMLQ=26;MQ=61.18;NF=30,30;NR=90,90;PP=297,2997;QD=2.5;SC=GCTGCTGCTATTGCTGCTGCT;SbPval=0.33;Source=Platypus;TC=144;TCF=32;TCR=112;TR=120,120;WE=24382395;WS=24382363;set=Platypus	GT:AF:DP	0/1:0.83:144
chrX	24382407	.	TGCTGCTGCTGCTGCTGCTGCTCCTGCTCCTGCTCTA	T	3000	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=1;HapScore=1;MGOF=5;MMLQ=26;MQ=61.79;NF=20;NR=98;PP=3000;QD=20;SC=CTGCTGCTGCTGCTGCTGCTG;SbPval=0.49;Source=Platypus;TC=138;TCF=23;TCR=115;TR=118;WE=24382461;WS=24382397;set=Platypus	GT:AD:AF:DP	1/1:20,118:0.86:138
chrX	24382416	.	TG	T	993.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.540;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=4.141;MLEAC=1;MLEAF=0.500;MQ=62.46;MQRankSum=3.762;QD=11.56;ReadPosRankSum=5.401;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:38,48:0.56:86
chrX	24382418	.	CTGCTGCTGCTCCTGCTCCTGCTCTAGCTGCTGCTG	C	991.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.619;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=4.032;MLEAC=1;MLEAF=0.500;MQ=62.47;MQRankSum=3.823;QD=11.40;ReadPosRankSum=5.597;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:39,48:0.55:87
chrX	24382429	.	CCTGCTCCTGCTCTAGCTGCTGCTG	C	2757	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=1;HapScore=2;MGOF=61;MMLQ=24;MQ=61.59;NF=16;NR=87;PP=2757;QD=20;SC=TGCTGCTGCTCCTGCTCCTGC;SbPval=0.74;Source=Platypus;TC=156;TCF=29;TCR=127;TR=103;WE=24382501;WS=24382419;set=Platypus	GT:AD:AF:DP	1/0:53,103:0.66:156
chrX	24382440	.	TCTA	T	2327	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=2;HapScore=2;MGOF=69;MMLQ=27;MQ=63.05;NF=46;NR=98;PP=2327;QD=16.3402777778;SC=CTGCTCCTGCTCTAGCTGCTG;SbPval=0.5;Source=Platypus;TC=145;TCF=46;TCR=99;TR=144;WE=24382501;WS=24382419;set=Platypus	GT:AD:AF:DP	0/1:1,144:0.99:145
chrX	24382453	.	G	C	2965	.	AC=2;AF=1.00;AN=2;HP=1;MMLQ=22;NF=44;NR=57;SC=AGCTGCTGCTGCTGCTCCTGC;SbPval=0.73;Source=Platypus;TC=212;TCF=101;TCR=111;TR=101;set=Platypus	GT:AD:AF:DP	1/1:111,101:0.48:212
chrX	24382950	rs16982979	G	A	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chrX	24516925	.	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.159;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chrX	24536954	.	GCACACACACACA	GCA,G	1363.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=47;set=Intersection	GT:AF:DP	1/1:1.00:32
chrX	24665273	rs1207651	G	A	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chrX	24665391	.	CCT	C	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.84;ReadPosRankSum=-0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chrX	24751958	rs4058344	T	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	24760276	rs113389943	AC	A	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.729;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chrX	26157220	rs5944317	C	T	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chrX	26157792	rs5944318	C	T	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	26179532	rs5943854	A	G	8083.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chrX	27479339	rs12842916	A	G	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chrX	27765399	rs371896121	AGAG	A	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=1.973;QD=3.97;ReadPosRankSum=-0.931;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chrX	28807345	rs12009069	G	A	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	28807442	rs6526806	G	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	29417510	rs4829347	C	A	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	30236658	rs6526962	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	30236878	rs2529541	G	A	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chrX	30236913	rs5973792	G	A	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chrX	30237003	rs2074793	C	T	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	30254376	rs2071309	T	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	30261002	rs2071311	A	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	30261158	rs2856733	G	C	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chrX	30577846	rs887369	A	C	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chrX	30671896	rs12854653	G	C	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	30695941	rs11400828	C	CA	104.27	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:2,8:0.80:10
chrX	30872602	rs5927629	A	G	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chrX	31089930	rs438870	C	T	11571.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.064;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=1.448;SOR=0.247;set=HC	GT:AD:AF:DP	1/1:1,447:1.00:448
chrX	31132797	rs10536600	CGG	C	2022.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=44.95;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	31132806	rs1269041	G	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=42.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	31165310	rs1484852	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	31165667	rs200534475	AAAAG	A	545.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.381;QD=16.54;ReadPosRankSum=-0.869;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chrX	31191589	rs2404496	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	31224684	rs2293668	A	G	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	31224881	rs2293667	G	A	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	31496350	rs1800280	C	T	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chrX	31526200	rs3788893	C	T	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	31697636	rs1801188	A	G	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chrX	32053662	rs2222852	G	C	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	32360466	rs6527184	C	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	32361033	rs7891425	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	32459169	rs41303185	G	A	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	32472763	rs5902031	C	CT	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=0.723;QD=9.79;ReadPosRankSum=1.924;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:10,24:0.71:34
chrX	32503194	rs228406	T	C	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	34961306	rs41305183	G	C	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chrX	36156447	rs376682738	AT	A	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-1.084;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:8,32:0.80:40
chrX	36162664	rs5973599	C	A	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	36162684	rs112700338	C	CTG	2994.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	36253971	rs28406365	G	A	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	36269601	rs5972034	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	36298580	rs5973634	A	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	36397643	rs5972043	A	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	36403036	rs6527569	A	G	8582.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chrX	37527573	.	AAT	A	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=6.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.463;SOR=0.067;set=HC	GT:AD:AF:DP	0/1:22,4:0.15:26
chrX	37655143	.	A	ATG	51.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.62;ReadPosRankSum=-1.282;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chrX	37699976	.	TAC	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.23;ReadPosRankSum=2.467;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chrX	37700014	rs5918401	C	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.40;ReadPosRankSum=-1.368;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chrX	37701048	rs11771	G	A	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chrX	38079900	rs6611251	G	C	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chrX	38144822	rs12688514	C	T	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chrX	38144856	rs12687163	G	A	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chrX	38150378	rs5918520	T	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	38160433	rs11266204	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	38169777	rs35587043	T	TA	3450.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	38178019	rs3810692	G	A	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	38262808	rs2235125	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	38271377	rs3215429	A	AT	306.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.91;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	38515168	rs5917614	G	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	38535174	rs4826996	A	G	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	38664817	.	CT	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.442;QD=2.31;ReadPosRankSum=0.062;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chrX	39933339	rs5917933	A	G	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chrX	40456961	rs3112299	G	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	40499403	rs4827221	C	T	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	40506697	rs6610447	A	G	7244.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chrX	40514322	rs11266293	G	A	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	40556492	rs5918029	C	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	41010474	.	CT	C	26	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=9;HapScore=2;MGOF=0;MMLQ=27;MQ=60.0;NF=0;NR=2;PP=26;QD=20.0;SC=CATCTACCTCCTTTTTTTTTA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=41010482;WS=41010464;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	41383297	rs199560653	G	GA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=0.792;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chrX	41554814	rs913602	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	41587218	rs1023065	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	41604961	rs41305751	G	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	43552773	rs41303697	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	43571197	rs1800464	A	C	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	43591036	rs6323	G	T	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chrX	43595428	rs2235186	A	G	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	43601142	rs979606	C	T	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	43601363	rs979605	A	G	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.171;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	43603391	rs1137070	T	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	43627999	rs1799836	T	C	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chrX	43741616	rs1181251	G	C	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chrX	44037687	rs41309737	G	A	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chrX	44202890	rs5902346	G	GC	9861.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chrX	44386444	.	GA	G	33.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.83;ReadPosRankSum=-1.465;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chrX	44833841	rs6611055	C	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chrX	44935924	rs10605935	CT	C	654.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:5,47:0.90:52
chrX	45011340	rs4824527	T	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	45013523	.	C	CCTAT	52.92	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	45016802	rs6521006	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	45017166	rs5952693	A	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	45050973	rs4239958	C	T	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	45606307	.	T	TGTGTGTGTGA	212.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.89;QD=35.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	45606319	.	A	AGTGTGTGT	59.25	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.78;QD=59.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chrX	46321944	rs11342771	CA	C	939.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.501;QD=11.32;ReadPosRankSum=0.433;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:13,70:0.84:83
chrX	46466760	rs2072840	C	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	46472666	rs6611276	C	T	98.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	46472826	rs3208940	G	A	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	46502684	rs138701264	A	G	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	46513260	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=3.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=2.854;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chrX	46618321	rs1056846	C	G	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.63;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chrX	46737138	rs58164919	G	GGTGTGT	380.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	46893249	rs5906311	G	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	46944155	rs6611328	A	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	46949403	rs6611330	C	T	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	46951004	rs5906327	G	T	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	46952219	rs4480242	A	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	47036113	rs375726080	GTC	G	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.734;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.988;QD=7.41;ReadPosRankSum=-2.254;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chrX	47057647	rs4468050	A	G	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	47061018	rs4239964	C	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	47063146	rs11463928	C	CT	118.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.197;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chrX	47086347	rs6417923	G	A	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chrX	47106463	rs17327536	G	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	47343254	rs2071778	C	T	3965.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chrX	47372903	rs3748520	A	C	127.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.08;QD=21.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	47430509	rs34987183	AGT	A	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chrX	47430611	.	G	GGT	1423.73	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:37,69:0.65:106
chrX	47487912	rs11436787	T	TG	5163.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	47755164	rs3949810	C	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	47757758	rs5906510	T	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chrX	47920356	rs727079	A	G	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chrX	48049666	rs5906557	C	T	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	48053521	rs4239967	T	C	8400.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chrX	48054740	rs4824675	C	G	11467.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chrX	48159107	rs41305745	C	T	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chrX	48163733	rs5902420	TC	T	7033.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.05;QD=30.85;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chrX	48163789	.	A	T	8934.77	.	AC=2;AF=1.00;AN=2;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=25.38;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chrX	48164138	rs5906631	A	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	48164338	rs72619008	G	A	7873.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chrX	48339660	rs17250918	G	A	10822.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chrX	48382099	.	CT	C	99.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=0.799;QD=6.23;ReadPosRankSum=-0.243;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chrX	48432791	rs2661105	T	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.64;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	48433499	rs2249583	C	G	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chrX	48433529	rs2249585	C	T	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chrX	48435308	rs235830	G	A	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	48435928	rs235829	C	T	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	48457034	.	AC	A	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.039;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=23.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=2.191;SOR=2.042;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chrX	48460314	rs235842	A	G	9178.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chrX	48460625	rs235841	G	C	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	48544650	rs235423	A	G	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	48623981	rs66661999	CA	C	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=0.000;QD=5.20;ReadPosRankSum=1.688;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:14,34:0.71:48
chrX	48649426	rs139472040	A	AG	1978.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=63.83;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	48649449	rs62600348	T	G	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	48649456	rs66717003	T	G	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.78;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	48690416	rs6520383	G	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	48690538	rs186964289	G	A	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chrX	48751471	rs1128363	A	G	7601.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chrX	48759204	rs741932	C	T	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	48760793	rs2239453	C	T	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	48768695	rs370341804	GCA	G	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.982;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:102,20:0.16:122
chrX	48775681	rs371733807	GAC	G	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.141;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:65,13:0.17:78
chrX	48844368	.	GAC	G	109.79	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.30;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	48858802	rs28727466	G	A	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	48888074	rs3027472	T	C	7212.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chrX	48898183	rs7056903	C	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	48900900	rs4824738	T	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.692;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	49021256	rs5906744	A	G	8580.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chrX	49021537	rs5905720	G	C	9732.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chrX	49022276	rs5953269	C	G	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=45.43;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	49022286	rs72619037	C	G	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=46.34;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	49022291	.	GT	G	2519.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	49022293	rs75416104	C	G	2601.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=50.03;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	49022295	rs138365388	A	G	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=40.67;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	49022309	rs73634213	C	A	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=46.46;SOR=1.454;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	49022309	.	CAA	AAG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.67;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=24;MQ=59.92;NF=57;NR=30;PP=2947;QD=20;SC=AGATTTCTCTCAAGGTCAGGG;SbPval=0.61;Source=Platypus;TC=89;TCF=57;TCR=32;TR=87;WE=49022319;WS=49022266;set=Platypus	GT:AD:AF:DP	1/1:2,87:0.98:89
chrX	49022311	rs7880193	A	G	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=43.08;SOR=1.386;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	49022700	rs4824462	T	C	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	49030776	rs200730422	AGT	A	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.127;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=3.040;QD=0.17;ReadPosRankSum=-1.369;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:282,29:0.09:311
chrX	49077121	rs56114689	C	T	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	49104815	rs2280882	T	C	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	49105610	rs2294021	T	C	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chrX	49369711	rs3747318	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	49370511	rs201541439	AAAT	A	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chrX	49458624	.	G	GAC	217.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chrX	49767832	rs456615	A	G	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.90;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	49767835	rs456617	A	G	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	49767904	rs149259	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	49961591	rs190421799	T	C	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chrX	50118957	rs4074321	C	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	50119085	rs4074320	C	T	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	50120032	rs4590578	G	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	50121146	rs11415594	A	AG	2536.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.76;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	50121849	rs5915424	A	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	50122509	rs4275357	A	C	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	50122932	rs4489439	A	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chrX	50129369	rs5961179	A	G	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	50130544	rs7883609	G	A	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	50130717	rs67155896	T	C	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chrX	50134383	rs1934192	G	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	50135327	rs17328222	C	A	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	50143965	rs1934190	G	C	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	50146570	rs4143304	C	T	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	50165595	rs59226442	A	AACAC	434.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.000;QD=36.23;ReadPosRankSum=0.842;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chrX	50350728	rs6614552	T	C	2255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.621;QD=19.96;ReadPosRankSum=1.105;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:10,103:0.91:113
chrX	50350758	rs201922875	C	CTGCTGCTGCTGT	5545.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=47.00;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	50653775	rs3810682	C	G	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	50654091	rs41308602	A	G	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chrX	51075841	rs2625875	A	G	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-10.467;QD=1.43;ReadPosRankSum=5.031;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:394,87:0.18:481
chrX	51075901	rs2801627	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-4.993;QD=0.40;ReadPosRankSum=-3.623;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:169,29:0.15:198
chrX	51239295	.	ATCCTCGAGGCAGCC	A	6506.73	.	AC=2;AF=1.00;AN=2;DP=359;set=Intersection	GT:AD:AF:DP	1/1:5,261:0.98:266
chrX	51486659	rs974285	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	51637705	.	A	AT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=0.35;ReadPosRankSum=1.111;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:175,33:0.16:208
chrX	52825471	rs2806837	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	52825546	rs2806838	C	G	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	52891492	rs114794367	T	C	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chrX	52891512	rs78471253	A	T	767.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.728;QD=24.77;ReadPosRankSum=-0.226;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chrX	52891513	rs114568211	C	T	767.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.710;QD=23.99;ReadPosRankSum=-0.530;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chrX	52891523	rs75536354	G	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.770;QD=23.58;ReadPosRankSum=0.067;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chrX	52891542	rs78672295	A	G	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=0.122;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chrX	52891565	rs79831867	A	G	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.663;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chrX	52891584	rs5943751	C	T,A	2107.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=28.48;SOR=0.992;set=HC	GT:AD:AF:DP	1/2:0,50,24:0.68,0.32:74
chrX	52891619	.	GT	G	781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.414;QD=6.98;ReadPosRankSum=1.337;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:74,38:0.34:112
chrX	52891645	rs75808475	A	G	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.343;QD=11.95;ReadPosRankSum=0.916;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:90,51:0.36:141
chrX	52891653	rs73206488	C	T	1678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.332;QD=11.58;ReadPosRankSum=0.824;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:92,53:0.37:145
chrX	52891732	rs201414570	G	A	1398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.638;QD=11.47;ReadPosRankSum=1.693;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:84,38:0.31:122
chrX	52891736	rs75971120	G	T	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.637;QD=11.35;ReadPosRankSum=0.667;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:83,40:0.33:123
chrX	52891738	rs79449844	C	T	1401.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.636;QD=11.68;ReadPosRankSum=0.114;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:80,40:0.33:120
chrX	52891739	rs75999615	A	G	1401.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.636;QD=11.68;ReadPosRankSum=-0.125;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:80,40:0.33:120
chrX	52891818	rs73488230	G	A	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chrX	52891832	rs66491662	CT	C	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chrX	52895579	.	GGT	G	1280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.000;QD=24.16;ReadPosRankSum=1.091;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:6,47:0.89:53
chrX	53222043	rs146836963	A	AC	1708.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.51;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	53225751	rs1536247	A	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	53228148	rs1977364	C	A	9345.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chrX	53265835	rs2296541	T	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	53271147	rs2274307	T	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.49;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	53280421	rs7886988	G	A	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	53436232	rs1264008	G	T	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	53449336	rs11462431	A	AG	382.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	53453074	rs4830346	A	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	53563589	rs426298	A	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	53607754	rs266786	A	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	53622078	rs1244413	T	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	53629649	.	AAT	A	67.73	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,8:0.14:58
chrX	53630516	.	T	TA	617.52	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:7,39:0.85:46
chrX	53652852	.	T	TGCCGGG	1911.73	.	AC=2;AF=1.00;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	53964668	rs41304788	G	A	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	54107692	rs2516098	T	C	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chrX	54117740	rs2495797	C	A	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	54161859	rs4826523	C	T	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	54209387	rs2495783	A	G	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chrX	54800637	rs35679081	CA	C	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.985;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chrX	54953647	rs2273138	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	55116466	rs1845444	C	G	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=25.61;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	55173732	rs11327722	TA	T	11477.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chrX	55246965	rs5914272	C	T	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	55247030	rs5914273	C	G	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	55248376	rs5914275	A	G	2944.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chrX	55249049	rs2148982	T	C	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	55289593	rs2148981	C	T	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	55289774	rs4826381	T	C	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	55514818	rs3126255	C	T	10258.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=-1.599;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:3,406:0.99:409
chrX	55651001	rs2375465	T	C	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	55748820	rs1473761	A	G	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	55757744	rs5960480	T	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	56291516	rs1033565	T	G	161.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	56292257	rs5960671	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	56295245	rs3747284	T	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	56295438	.	AACAC	A,AAC	4568.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.181;QD=23.55;ReadPosRankSum=-1.868;SOR=0.950;set=HC	GT:AD:AF:DP	1/2:4,23,167:0.12,0.86:194
chrX	56295958	rs200952140	ATG	A	1196.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.69;SOR=4.921;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	56296488	rs12862304	G	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	56296780	.	A	AACACAC,AACAC	330.74	.	AC=2,0;AF=1.00,0.00;AN=2;DP=14;set=Intersection	GT:AF:DP	1/1:1.00:9
chrX	57405163	rs4826543	T	C	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	57474943	rs1821118	A	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	57475132	rs1367830	T	C	9260.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chrX	57619648	rs1057328	G	T	7092.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chrX	63570024	rs17301157	G	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	65382685	rs5919015	T	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	65393658	rs5918591	A	G	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	65420609	rs1264215	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	65478922	rs11433175	T	TA	200.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	65486172	rs2054180	C	T	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	65819223	rs4827499	A	G	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	65819286	rs11379040	G	GT	1396.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	65822607	rs1385698	T	C	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	65824986	rs1385699	C	T	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,128:0.99:129
chrX	66765158	rs3032358	T	TGCA	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=61.94;MQRankSum=3.099;QD=15.72;ReadPosRankSum=-1.656;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chrX	66766356	.	TGGC	T	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-0.814;QD=1.93;ReadPosRankSum=0.178;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:61,11:0.15:72
chrX	66941597	rs1337076	T	G	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	67331930	.	CAG	C	473.80	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chrX	67331934	rs5918812	G	C	482.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.49;ReadPosRankSum=1.724;SOR=0.442;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chrX	67338958	.	A	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=90.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=3.181;SOR=6.868;set=HC	GT:AD:AF:DP	0/1:40,30:0.43:70
chrX	67412906	rs1191948	G	A	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chrX	67429834	rs57516402	CT	C	549.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:5,40:0.89:45
chrX	67431814	rs2225124	A	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	67719085	rs12843249	G	T	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	68066095	.	A	AGT,AGTGT	1499.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=88;set=Intersection	GT:AF:DP	0/1:0.81:64
chrX	68066220	rs73218774	G	C	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	68725383	rs187723921	G	A	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chrX	68725640	rs1171942	T	C	16239.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,606:1.00:606
chrX	68890027	.	G	GTTTTT	187.87	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	68890248	rs5936723	C	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	68890298	rs5980833	C	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	69080840	rs1203003	G	A	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chrX	69262423	rs2296767	T	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	69424664	rs5980905	G	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	69500852	rs35570675	T	TG	141.75	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chrX	69504077	.	CT	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.664;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chrX	69510335	rs1199470	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	69607212	.	C	CT	621.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=-0.508;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chrX	69626739	rs10482161	C	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	69637862	.	C	T	9538.77	.	AC=2;AF=1.00;AN=2;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=45.42;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chrX	69637865	rs5980934	G	T	9563.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=43.87;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chrX	69639698	rs1886892	G	T	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	69639832	rs5980700	C	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	69645230	rs45513993	C	T	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chrX	69645372	rs5980938	G	C	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	69645983	rs73216706	A	G	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chrX	69647169	rs5980939	T	C	11137.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chrX	69652762	rs2296542	A	G	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chrX	69668463	rs2281868	A	G	6893.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chrX	69672462	rs12850410	G	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	69672655	rs12010766	T	C	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	69673811	rs2274309	T	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	69718314	rs1886890	C	T	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	69718533	rs3215810	CTCAT	C	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	69749852	rs1536250	AT	GA	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	69774517	rs4844240	A	T	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chrX	69825109	rs17301881	A	G	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	69826685	rs12014919	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	69827014	rs73216791	T	C	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	69898742	rs55853716	GA	G	211.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=15.12;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	69964084	rs5902674	G	GA	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=-0.613;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chrX	70053469	rs17301944	A	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	70148927	rs5936605	T	A	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=25.97;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	70149360	rs5936606	G	A	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	70282696	rs34211894	A	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chrX	70321631	rs5980742	T	G	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chrX	70324157	rs1130009	C	T	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chrX	70324397	rs12857595	G	A	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	70339498	rs12850852	C	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	70340738	rs4844282	A	G	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	70341122	.	T	TACTTTATCTGCTTC	791.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=65.98;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	70341169	rs62609586	A	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	70342820	rs7053139	A	G	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chrX	70343621	rs12841977	A	G	4805.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	70344331	rs59024650	G	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	70344763	rs5030616	G	T	6535.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:9,276:0.97:285
chrX	70345683	rs73214869	T	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	70348344	rs5030618	G	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	70349947	rs5030619	A	C	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chrX	70352417	rs10521349	T	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	70352516	rs12843026	A	G	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	70352617	.	CCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT	C	1789.73	.	AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.14;QD=38.91;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	70355258	rs34862123	CTT	C	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	70361608	rs7056408	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	70361651	.	C	CA	608.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=19.02;ReadPosRankSum=-0.158;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chrX	70361967	rs36072155	G	A	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chrX	70373216	rs2233440	C	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	70390032	.	GAC	G	45.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chrX	70469182	rs2341539	G	A	3847.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chrX	70608763	.	G	GT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.207;QD=0.39;ReadPosRankSum=0.805;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:162,31:0.16:193
chrX	70613074	rs201372159	TTG	T	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=1.024;QD=8.95;ReadPosRankSum=1.605;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chrX	70617443	rs5980760	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	70774984	.	T	TTGTGTGTG,TTGTG	269.84	.	AC=2,0;AF=1.00,0.00;AN=2;DP=10;set=Intersection	GT:AF:DP	1/1:0.88:8
chrX	71354684	rs6625946	G	A	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	71357093	rs6625949	G	A	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	71357160	rs6625950	G	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	71363415	rs6624597	C	T	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chrX	71364479	rs11094247	A	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chrX	71401607	rs6525589	G	A	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	71401614	rs7058353	C	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.38;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	71406301	rs6525591	T	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	71493691	rs7580	C	T	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chrX	71495344	rs3827426	C	T	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.51;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chrX	71495388	rs34563981	T	TCTA	12425.73	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=45.02;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chrX	71495869	rs3747303	A	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	71518799	rs5958780	G	T	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chrX	71521867	rs3012627	G	C	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chrX	71791975	rs3830710	TA	T	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=4.086;QD=0.66;ReadPosRankSum=1.150;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:108,34:0.24:142
chrX	71813191	rs200569284	C	CT	278.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.000;QD=14.67;ReadPosRankSum=-0.967;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:3,16:0.84:19
chrX	71823194	rs5912109	A	G	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	71933512	.	T	TCA	4926.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DP=375;ExcessHet=3.0103;FS=2.404;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=15.44;ReadPosRankSum=0.510;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:92,227:0.71:319
chrX	72223371	.	A	G	384.77	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	72899365	rs6648376	T	C	112.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	73043780	.	C	A	2574.77	.	AC=2;AF=1.00;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	73043817	rs1620574	T	C	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chrX	73066439	rs1894271	T	C	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	73067239	.	CT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-1.894;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chrX	73094828	.	G	A	208.78	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	73641569	rs6647476	T	C	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chrX	73749319	rs5937843	T	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	74332585	rs4148838	G	GT	122.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.53;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	74375871	rs1039123	G	C	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chrX	74376420	rs5981325	C	T	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	74494470	rs4892396	T	G	13336.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chrX	74494483	rs5981831	A	G	11812.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chrX	74511202	rs5981834	G	C	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	74523367	rs972561	A	G	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	74598903	rs5937369	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	74961968	rs5938183	G	A	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	75395172	rs2301863	T	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	75395187	rs2301862	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	76139959	rs232961	C	T	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	76937295	.	A	C	1689.77	.	AC=2;AF=1.00;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	77086467	rs201564456	TTTTTATTTTATTTTATTTTA	T	383.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=2.111;QD=34.88;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chrX	77218316	.	G	A	4321.77	.	AC=2;AF=1.00;AN=2;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chrX	77296047	rs5913631	G	C	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	77298857	rs4826245	G	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=26.07;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	77528317	rs320995	G	A	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chrX	78426471	rs3810712	C	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	78426488	rs3810711	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	78426988	rs3827440	T	C	5301.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chrX	78617053	rs1736662	A	G	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	78617999	rs1751133	T	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	78618050	rs1751134	A	G	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	79698593	rs1113265	C	G	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chrX	79937084	rs3122406	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	79942599	rs3029738	GTATA	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chrX	79943569	rs3122407	T	C	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chrX	79999796	rs58601634	T	TCAC	280.75	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=35.09;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	80064910	rs200402115	A	AC	7393.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.49;ReadPosRankSum=1.414;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:8,261:0.97:269
chrX	82764040	rs5921978	A	G	7366.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.12;ReadPosRankSum=0.161;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:2,280:0.99:282
chrX	82764040	.	AGG	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.63;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=59.98;NF=92;NR=63;PP=2947;QD=20;SC=GCAGGTTCGAAGGCTTGCAGC;SbPval=0.52;Source=Platypus;TC=156;TCF=93;TCR=63;TR=155;WE=82764050;WS=82764030;set=Platypus	GT:AD:AF:DP	1/1:1,155:0.99:156
chrX	82764042	rs5921979	G	C	12573.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chrX	83119939	rs5922000	T	C	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	83319457	.	T	TA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.546;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chrX	83403148	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=1.108;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chrX	83442983	.	CCCGCCGCCGCCGCCG	C,CCCG	3541.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=135;set=Intersection	GT:AF:DP	1/2:0.15,0.84:89
chrX	84258843	rs3747422	C	G	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	84349807	rs4828124	G	A	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	84350010	rs4828326	A	G	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chrX	84350128	rs4828327	G	T	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	84358864	rs5922146	C	T	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	84363140	rs10126146	A	G	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chrX	84534383	rs2227090	A	C	1299.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=-0.309;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,66:0.97:68
chrX	84537132	rs151042142	T	C	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	84563135	rs363774	T	A	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chrX	86887244	rs222084	C	T	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	88008423	rs5940915	A	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	88008807	rs5984611	G	A	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	88009322	rs5984613	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	91518011	rs5903000	CA	C	56.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;MQRankSum=0.180;QD=8.02;ReadPosRankSum=-0.792;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chrX	91675436	rs12863110	A	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	91675485	rs189220205	G	A	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chrX	92927634	rs1045686	G	C	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	96048757	rs3135400	C	T	53.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	96139406	rs2642219	G	A	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	96139459	rs2642218	T	C	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	96197175	rs5920973	G	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	99657473	rs140347413	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	99919733	rs2022475	G	A	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	99930886	.	T	TACACACACAC	98.25	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	99930892	rs4828041	T	C	99.14	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.05;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	99941705	rs2022039	T	C	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chrX	99943244	rs5921627	G	C	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	99956157	rs5967170	T	C	125.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	100240948	rs146259466	T	A	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	100243459	rs3934462	G	T	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chrX	100268568	.	C	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-3.884;QD=5.93;ReadPosRankSum=1.295;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chrX	100268569	.	T	G	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-3.884;QD=5.93;ReadPosRankSum=1.295;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chrX	100268595	.	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-3.460;QD=7.84;ReadPosRankSum=0.369;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chrX	100268601	.	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-3.460;QD=7.84;ReadPosRankSum=-0.214;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chrX	100268610	.	GCA	G	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-3.087;QD=8.89;ReadPosRankSum=-1.746;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chrX	100268615	.	C	CAT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-3.087;QD=8.89;ReadPosRankSum=-1.517;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chrX	100268623	.	A	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-3.087;QD=9.65;ReadPosRankSum=-1.746;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chrX	100356021	rs200931377	ATAACT	A	5341.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chrX	100357194	rs12156858	C	G	290.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	100357201	rs12156663	T	C	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	100357417	rs59141949	CT	C	301.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	100357474	.	TTATA	T	44.52	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	100395547	rs2273379	T	G	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	100400023	rs2295376	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	100492773	rs5921756	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	100532439	.	CA	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=2.641;QD=5.86;ReadPosRankSum=0.308;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chrX	100547933	rs5951328	A	G	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chrX	100604757	rs700	T	G	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	100609547	rs2071223	G	A	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	100615025	rs5951412	G	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	100615478	rs2855259	C	T	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	100617372	rs2071222	T	C	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	100742551	rs2361298	G	A	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	100743037	rs963618	C	T	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	100743826	rs5951332	A	G	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	100745825	rs5951333	T	C	5527.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chrX	100748078	rs5991911	A	G	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	100749585	rs3174476	C	T	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	100911066	rs3850315	C	T	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	101138792	rs5944882	T	C	6421.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chrX	101141776	rs67953349	AC	A	230.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	101141793	rs5944778	G	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	101395780	rs11408120	T	TG	4769.73	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chrX	101623586	.	ATGG	A	16920.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.42;MQRankSum=-0.163;QD=34.32;ReadPosRankSum=-1.380;SOR=0.639;set=HC	GT:AD:AF:DP	1/1:15,478:0.97:493
chrX	102174289	rs34889669	T	C	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	102192261	rs5945909	C	T	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chrX	102320931	.	ATGTG	A	466.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;QD=38.89;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	102332171	rs34811257	CT	C	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.561;QD=9.47;ReadPosRankSum=1.101;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:17,50:0.75:67
chrX	102339606	rs1029305	T	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	102342405	rs5945935	G	A	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	102840661	rs190164411	G	A	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	102930960	rs874	A	G	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	102979486	rs4907817	T	C	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chrX	103031700	rs11371342	A	AG	461.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.78;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	103036412	rs521895	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	103042882	rs1126707	T	C	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chrX	103295543	rs3213517	A	C	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chrX	104464276	rs375033944	CA	C	20470.73	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chrX	104464281	rs367644904	TC	T	20469.73	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chrX	105153001	rs209372	A	G	7703.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chrX	106184601	.	TGA	T	225.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chrX	106841056	.	TGAG	T	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.951;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:210,21:0.09:231
chrX	107415825	rs2881142	T	C	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	107418281	rs2295914	C	T	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	107418906	rs4623610	A	G	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chrX	107423674	.	TACACAC	T,TAC	3746.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;QD=40.73;SOR=1.216;set=HC	GT:AD:AF:DP	1/2:0,17,75:0.18,0.82:92
chrX	107430579	rs1266715	G	A	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	107433688	rs1042065	A	G	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,161:0.99:163
chrX	107437848	rs1266719	G	C	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chrX	107438119	rs1266720	G	T	68.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	107448639	rs1266730	G	T	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	107449938	rs1266731	G	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	107450101	rs1266732	T	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	107455014	rs1266736	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	107463090	rs201304389	CCCATATTGTATT	C	528.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=40.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	107827760	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=1.835;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chrX	108636057	.	CT	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.705;QD=1.38;ReadPosRankSum=0.875;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:68,24:0.26:92
chrX	108904729	rs839408	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	108917757	rs5942830	T	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	109298414	rs12841904	G	A	129.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	109325486	rs5942887	T	C	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	109387928	rs946820	G	A	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	109507669	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.916;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chrX	109694685	rs2073787	T	A	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chrX	109931799	rs5943052	A	G	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chrX	109931856	rs5943053	T	C	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chrX	110494277	rs17882616	A	G	9381.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chrX	110494528	.	G	GA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.174;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chrX	110980084	rs200066623	C	T	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chrX	111002927	.	T	G	1488.77	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	114082535	rs5946005	G	A	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chrX	114400318	rs4361922	T	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	114425181	.	A	AGAGGCCGCTCGCCCAACGCCCACAGCG	5787.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.60;MQRankSum=1.881;QD=29.53;ReadPosRankSum=1.893;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:5,191:0.97:196
chrX	114425400	rs12857270	G	A	9738.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:1,375:1.00:376
chrX	114426171	rs5946294	C	T	13371.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;MQRankSum=6.573;QD=22.74;ReadPosRankSum=11.472;SOR=0.622;set=HC	GT:AD:AF:DP	1/1:63,525:0.89:588
chrX	114426917	rs4911809	C	T	8842.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chrX	114880654	.	GAC	G	66.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:34,6:0.15:40
chrX	115584402	rs6608646	C	G	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.42;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	117117398	.	G	GA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.263;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chrX	117520365	.	AAT	A	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.994;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chrX	117677349	rs1294781	G	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	117677642	rs1294780	A	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	117679234	rs55694052	CT	C	886.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;MQRankSum=0.344;QD=18.47;ReadPosRankSum=0.289;SOR=0.555;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chrX	117680172	.	G	GC	59	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=1;HapScore=2;MGOF=22;MMLQ=26;MQ=63.51;NF=0;NR=1;PP=59;QD=102.0;SC=AAGAGCCCTAGCAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=1;WE=117680180;WS=117680162;set=Platypus	GT:AD:AF:DP	1/1:1,1:0.50:2
chrX	117680174	rs11796562	A	C	70.94	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.29;QD=14.19;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	117718669	rs1781091	TT	AA	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	117722176	rs41312765	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	117758717	.	C	CT	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-0.000;QD=5.58;ReadPosRankSum=1.732;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chrX	117810737	rs17331656	T	A	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	117815650	rs2275917	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	117817266	rs4372173	C	T	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	117819773	rs2379118	A	C	6408.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chrX	117819902	rs2186106	A	G	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	117874898	rs2246663	T	C	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	117892291	rs2997048	C	G	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	117904185	rs2248849	A	G	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chrX	117904229	rs2248846	T	C	10335.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:1,403:1.00:404
chrX	117904433	rs2248841	T	C	22330.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chrX	117908115	.	C	CT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.674;QD=5.37;ReadPosRankSum=-1.301;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chrX	117910545	rs3121671	A	T	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	117910551	rs3125163	G	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	117925898	rs2495636	A	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	117938928	rs2495639	G	A	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chrX	118215229	rs10714793	CA	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.616;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chrX	118281538	rs5910522	C	A	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	118281635	rs11405916	G	GC	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	118514072	rs217941	A	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	118533299	rs217975	A	G	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	118533366	rs217976	G	A	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.25;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	118544448	rs16274	T	C	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	118560403	rs217997	G	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	118587003	rs3810755	C	T	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.277;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	118603706	rs113356560	A	AG	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.981;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-8.495;QD=0.86;ReadPosRankSum=0.513;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:139,14:0.09:153
chrX	118603713	rs201182381	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-8.406;QD=0.92;ReadPosRankSum=2.459;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:136,14:0.09:150
chrX	118603729	rs143413528	G	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-8.645;QD=2.32;ReadPosRankSum=3.591;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:119,17:0.12:136
chrX	118603742	rs148294496	A	C	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.289;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-7.467;QD=3.82;ReadPosRankSum=3.509;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:87,17:0.16:104
chrX	118603747	rs141428607	A	T	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.779;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.253;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-7.547;QD=3.94;ReadPosRankSum=3.605;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:89,17:0.16:106
chrX	118603773	rs148920941	T	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:68,21:0.24:89
chrX	118603818	rs77766798	T	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-8.670;QD=1.56;ReadPosRankSum=-1.117;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:82,12:0.13:94
chrX	118603844	rs371749	T	G	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:5,96:0.95:101
chrX	118604436	rs12390	T	C	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=25.05;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	118604553	rs3216181	T	TA	2228.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	118678364	rs5910611	G	A	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	118699320	rs5910616	A	G	13208.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=25.65;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,515:1.00:515
chrX	118709567	rs139399184	T	TA	148.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	118737263	rs34571222	CA	C	88.87	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chrX	118754064	rs59071899	CA	C	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=10.30;ReadPosRankSum=1.646;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chrX	118758107	rs11338110	GT	G	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=0.955;QD=6.88;ReadPosRankSum=-2.744;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chrX	118758120	.	GTTTT	G	434.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=39.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	118809732	rs67811876	G	A	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	118820389	rs28687759	G	A	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	118827317	rs17261138	A	C	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	118829467	rs4825665	G	T	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chrX	118892888	rs2782222	G	C	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	118893054	rs2782223	C	A	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chrX	118893137	rs2782224	T	C	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chrX	118893413	rs2782225	T	C	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chrX	118920809	rs7885997	C	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	118925705	rs2240448	C	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	118977314	rs201504590	AAAG	A	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	119005587	rs1800823	T	C	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chrX	119007229	rs1800824	T	G	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chrX	119007509	rs67229707	CT	C	156.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.508;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chrX	119010427	rs2285553	C	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	119065893	rs194302	G	A	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	119070411	rs194307	T	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	119070567	rs194308	A	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	119387833	rs201958171	C	CTGA	8213.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:6,189:0.97:195
chrX	119387852	.	T	TGAC	1375	.	AC=1;AF=0.500;AN=2;BRF=0.65;FR=0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=22;MQ=59.99;NF=12;NR=34;PP=1375;QD=30.152173913;SC=ATGATGATGATGTCATTTTTT;SbPval=0.83;Source=Platypus;TC=72;TCF=24;TCR=48;TR=46;WE=119387860;WS=119387842;set=Platypus	GT:AD:AF:DP	1/0:26,46:0.64:72
chrX	119394904	rs3752341	G	T	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	119402264	rs41300936	A	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	119421163	rs3842485	T	TACACACACACACAC	95.52	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.84;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	119427747	rs72607685	A	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	119438372	rs41310458	T	G	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	119445015	rs3810749	C	T	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	119510144	rs3213723	C	G	163.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	119510456	rs3213724	G	C	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	119590533	rs12097	T	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	119972034	.	TTTTTTC	T	547.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.86;QD=39.12;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	122318386	rs58044961	A	AG	5400.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chrX	122336600	rs11452643	T	TG	1221.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	122616962	.	C	CT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.061;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chrX	122757141	rs186145610	G	A	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chrX	122805421	rs2105889	C	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	123041043	rs28382740	A	G	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	123195035	rs2297651	A	C	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	123195593	.	C	CT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=4.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=2.165;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chrX	123204978	.	C	CT	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.269;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:93,23:0.20:116
chrX	123498213	.	G	A	261.77	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	123615545	.	GTA	G	47.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,6:0.17:35
chrX	125953932	rs5931715	A	G	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chrX	125955428	rs2269777	G	A	7419.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chrX	125955644	rs2269776	A	T	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	128674631	.	T	TG	288.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=7.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=0.383;SOR=4.615;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chrX	128948893	rs5932686	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	128957640	rs2275605	T	C	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chrX	129054446	rs35183830	G	A	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=26.17;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	129147079	rs4830173	T	C	8369.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chrX	129267464	.	TA	T	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-1.297;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chrX	129269980	rs209998	G	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	129283520	rs1139851	A	G	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=23.89;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	129290699	rs189994	T	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	129349295	rs209238	T	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	129354240	rs1160681	C	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	129354254	rs3081123	TAA	T	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	129751476	.	TTTTCTTTCTTTC	T	241.74	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.22;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	130217020	rs5932835	G	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	130416958	rs5932877	C	T	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chrX	130420006	rs5930458	T	C	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	130420415	rs4495600	T	C	4954.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chrX	130423543	rs6637830	G	C	7149.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chrX	130678467	rs499030	A	G	8185.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chrX	130678596	rs17316625	C	G	11001.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chrX	130678844	rs655415	A	C	7149.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chrX	131203438	.	CATAT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.18;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chrX	131231430	.	TAC	T	101.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chrX	131803352	rs10550199	ATC	A	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	131803368	rs114281785	C	G	273.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	132161673	rs41304540	C	T	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	133379551	rs2428577	C	T	4382.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chrX	133511862	.	T	TA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-1.309;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chrX	133511988	rs5978001	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	133680547	rs757309	G	A	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	133921640	.	CT	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=-0.000;DP=51;ExcessHet=3.0103;FS=5.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.27;ReadPosRankSum=-2.027;SOR=1.759;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chrX	134125475	rs11739	C	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	134156121	rs2475853	G	C	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;QD=25.21;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chrX	134166442	.	C	A	5820.77	.	AC=2;AF=1.00;AN=2;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chrX	134185997	rs2498776	T	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	134427640	rs5978119	C	G	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	134703108	rs1937729	T	G	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	134715274	rs3737330	G	A	41.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	134948034	rs2034920	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	134987460	rs150013472	A	G	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chrX	135055694	rs6635201	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	135056299	rs5974575	G	A	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.40;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	135080623	rs370833071	C	CT	563.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=-0.274;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:5,31:0.86:36
chrX	135313185	.	C	CTT	82	.	AC=1;AF=0.500;AN=2;BRF=0.69;FR=0.5000;HP=15;HapScore=3;MGOF=19;MMLQ=15;MQ=60.0;NF=0;NR=7;PP=82;QD=12.1428571429;SC=CTGCAGCTGGCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=20;TCF=0;TCR=20;TR=7;WE=135313193;WS=135313175;set=Platypus	GT:AD:AF:DP	0/1:13,7:0.35:20
chrX	135333608	.	TGGGCG	T	406	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.869;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=11.809;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.612;QD=29.00;ReadPosRankSum=1.469;SOR=2.607;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chrX	135390818	rs5930928	T	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	135426693	rs4829829	A	G	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chrX	135426968	rs5930931	C	A	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	135429503	rs4829830	C	A	5220.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chrX	135430044	rs877761	T	C	10597.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.17;ReadPosRankSum=-0.161;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:2,419:1.00:421
chrX	135430483	rs912002	T	C	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chrX	135431236	rs5930932	T	C	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chrX	135431358	rs5930933	C	T	11736.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chrX	135433718	rs150978520	A	G	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	135435475	rs5903915	AT	A	516.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	135438388	rs6635268	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	135474420	rs1329546	C	A	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	135474444	rs34255702	AGAT	A	9137.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chrX	135480126	rs5974595	T	C	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chrX	135481956	.	TA	T	41	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5016;HP=13;HapScore=2;MGOF=178;MMLQ=21;MQ=60.0;NF=4;NR=0;PP=41;QD=11.5;SC=GATGTTTAATTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=4;WE=135481964;WS=135481946;set=Platypus	GT:AD:AF:DP	0/1:2,4:0.67:6
chrX	135496398	rs5930942	G	A	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chrX	135572223	rs3030366	A	ACT	2848.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	135593629	rs3027849	C	T	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	135767763	rs377510796	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.344;QD=1.26;ReadPosRankSum=-0.639;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chrX	135829842	rs585356	G	A	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	135956506	rs77794331	C	G	2515.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:108,122:0.53:230
chrX	135956571	.	T	TGG	763.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=6.671;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-8.395;QD=10.18;ReadPosRankSum=-4.757;SOR=1.515;set=HC	GT:AD:AF:DP	0/1:50,25:0.33:75
chrX	135956575	rs78646793	G	A	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=9.857;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-8.320;QD=9.69;ReadPosRankSum=-4.123;SOR=1.965;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chrX	137749997	rs5976185	A	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	138067202	rs34825181	A	G	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chrX	138067368	rs5974786	G	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	138286406	.	T	TC	3460.73	.	AC=2;AF=1.00;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	138670041	rs142463749	C	T	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	138686878	rs61751333	G	A	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	138698652	rs68033160	GA	G	463.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	138724725	rs926563	G	A	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chrX	138774209	rs4824861	C	T	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chrX	138811003	rs2094702	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	138825675	rs1268015	T	C	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	138882172	rs10717380	AC	A	612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=14.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=-0.719;SOR=0.034;set=HC	GT:AD:AF:DP	0/1:34,37:0.52:71
chrX	138897130	rs2491014	A	C	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	139099346	rs144430176	A	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	139099360	.	T	TA	322.75	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	139099377	.	A	G	671.77	.	AC=2;AF=1.00;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	139099397	rs139444795	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	139099429	rs5907565	T	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	139099962	rs142324994	G	A	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.81;QD=17.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	139298295	rs396467	C	T	6111.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chrX	140008385	rs5907732	G	T	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	140008515	rs5907733	C	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	140271268	rs2038375	G	C	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chrX	140336615	rs55683664	T	A	154.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.29;QD=19.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	140785696	rs2983592	T	C	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:64,22:0.26:86
chrX	140785739	rs149295712	A	C	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.567;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=5.235;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-5.798;QD=13.27;ReadPosRankSum=-0.819;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:92,52:0.36:144
chrX	140785739	.	AAA	CAC	840	.	AC=1;AF=0.500;AN=2;BRF=0.67;FR=0.5000;HP=4;HapScore=2;MGOF=9;MMLQ=24;MQ=56.6;NF=20;NR=11;PP=840;QD=28.8215443504;SC=ATGTTCTTTTAAAGTTCCTCC;SbPval=0.82;Source=Platypus;TC=75;TCF=42;TCR=33;TR=31;WE=140785749;WS=140785729;set=Platypus	GT:AD:AF:DP	0/1:44,31:0.41:75
chrX	140785741	rs144554749	A	C	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.924;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=5.141;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-5.658;QD=13.09;ReadPosRankSum=-1.076;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:92,54:0.37:146
chrX	140785855	rs146412887	A	G	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:54,80:0.60:134
chrX	140967287	rs12557512	C	T	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	140983031	rs176023	A	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	140983064	rs176024	G	A	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	140983103	rs176025	C	T	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chrX	140983127	rs176026	G	A	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	140993264	rs176036	G	A	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chrX	140993642	rs176037	C	T	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chrX	140994171	rs176047	C	G	12164.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.21;QD=25.77;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chrX	140994591	rs176048	C	G	10522.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chrX	140996339	rs113554474	A	C	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	141290865	rs3765272	C	T	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chrX	142121729	rs4825148	T	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	142121808	.	CAGA	C	4585.73	.	AC=2;AF=1.00;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chrX	142122058	rs62601929	T	G	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	142795225	rs3859898	G	A	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chrX	142967468	rs237520	T	G	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	144904252	rs3810704	G	A	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chrX	144904882	rs2748588	T	C	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chrX	145076302	rs5965660	T	G	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	147003564	rs1270092	T	C	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	147014960	rs4824232	C	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	147015021	rs4824233	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	147026330	rs11293471	AC	A	207.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	147719592	rs5980554	G	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	147719619	rs5980555	C	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	147719672	rs5980556	T	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	147733265	rs5904246	G	GA	291.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	147800748	rs241084	A	G	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	147891558	rs11117555	T	C	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	147919063	rs375432534	CAGTTA	C	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	148035344	rs10608807	GAC	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-1.809;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:52,8:0.13:60
chrX	148037055	rs16994868	G	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	148048207	rs111499310	CTT	C	421.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.535;QD=17.57;ReadPosRankSum=0.348;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:6,18:0.75:24
chrX	148055144	rs5980615	A	G	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chrX	148582350	rs139515077	CATT	C	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	148582549	rs1141608	G	A	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chrX	148582573	.	G	GA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=3.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.322;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:93,24:0.21:117
chrX	148619841	.	CAG	C	219.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.34;QD=36.63;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	148622730	rs3747443	G	A	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	148622745	rs3747442	T	A	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chrX	148627384	rs145921071	A	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.29;QD=29.47;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	148628490	.	A	T	421.77	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.48;QD=28.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	148713418	.	T	TCGCCGC	5199.73	.	AC=2;AF=1.00;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	148794953	rs1970766	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	148797348	rs2233048	C	T	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:1,283:1.00:284
chrX	148798223	rs2233050	T	C	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	148851402	.	A	T	144.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.88;QD=28.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	148851538	rs148144905	A	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	148851546	.	G	T	42.74	.	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.00;QD=42.74;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chrX	149013727	rs5983916	A	G	9570.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chrX	149114389	.	G	A	41.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	149613617	rs6526057	T	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	149630848	rs507156	T	C	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	149680221	rs659188	G	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	149680554	rs2070779	C	T	13937.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,535:1.00:535
chrX	149826503	rs222410	G	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	149862214	rs222346	A	C	73.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	149887056	rs526164	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	149895603	rs75451888	A	AAT	2166.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.36;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	149896019	rs3747313	G	A	97.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	149931106	rs16995747	C	T	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chrX	149937428	rs41311370	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	150336814	rs644345	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	150348228	rs1202874	C	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	150349533	rs62620754	G	A	15067.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chrX	150349557	rs68058591	CCACCACTGGCCA	C	24266.73	.	AC=2;AF=1.00;AN=2;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.69;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,543:1.00:543
chrX	150349649	rs561077	A	G	21426.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=853;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.130;QD=25.54;ReadPosRankSum=-0.796;SOR=0.401;set=HC	GT:AD:AF:DP	1/1:3,836:1.00:839
chrX	150789334	rs5904324	T	TA	1269.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	150789950	rs945815	C	T	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	150817141	.	CGCT	C	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.947;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.361;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:188,20:0.10:208
chrX	150840597	rs7886849	G	A	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	150840916	rs41299110	C	T	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chrX	150869267	rs4323608	A	G	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chrX	150873651	rs3761541	G	T	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	150907417	rs28650278	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	150911107	rs12013494	G	A	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	150912995	rs201215466	AGCATTG	A	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	151092126	rs1047246	C	G	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chrX	151092220	rs1047248	A	G	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	151092653	rs1047251	G	A	5497.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chrX	151123077	.	CCTG	C	37.73	.	AC=1;AF=0.500;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	0/1:3,2:0.40:5
chrX	151138179	rs1139916	A	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	151303393	rs210586	C	T	5495.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chrX	151303596	rs210585	C	T	8730.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chrX	151424488	rs60207108	G	GA	1822.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	151514195	rs3830670	G	GA	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	151560868	rs5970292	G	A	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chrX	151899760	rs2515830	A	G	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chrX	151899789	rs3005	G	A	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chrX	151899818	rs2233056	C	T	7670.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:2,299:0.99:301
chrX	151899913	rs2233055	T	C	12883.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=25.87;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,498:1.00:498
chrX	151904488	rs2515838	C	A	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	151904609	rs2471781	T	C	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chrX	151997273	rs2301188	A	C	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	151998340	rs3213467	T	C	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	152018832	rs5969919	T	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	152087420	rs16996799	C	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	152091153	rs2071261	A	C	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chrX	152097066	.	A	C	1461.77	.	AC=2;AF=1.00;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	152609450	rs3213462	T	C	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	152609668	rs3213463	T	C	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chrX	152610051	rs1467880	A	T	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	152610108	rs1467881	G	C	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=25.65;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	152610224	rs35024993	CGTGACCTCT	C	3859.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chrX	152610294	rs1467882	A	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	152610947	rs3213465	T	C	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	152610985	rs3213466	T	C	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	152611190	.	GGGGGTCCCAGCTGAGCTCTTGGAGTTGAGGTTAGGGTTT	G	729	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=4;HapScore=1;MGOF=2;MMLQ=25;MQ=69.07;NF=0;NR=6;PP=729;QD=126.666666667;SC=GGTTAGGGTTGGGGGTCCCAG;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=6;WE=152611236;WS=152611180;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	152613112	rs7066295	C	T	10861.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chrX	152727446	rs3020966	T	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	152727535	rs138590468	TA	T	588.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.30;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	152728155	rs2980032	T	C	7211.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chrX	152736686	rs2980037	C	G	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	152770402	rs2980053	A	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chrX	152771214	rs11363938	GA	G	888.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	152771509	rs1126499	C	T	6572.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chrX	152807665	rs2980012	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	152807923	rs2980013	G	C	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chrX	152815089	rs3020949	A	G	13270.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chrX	152815886	rs2285035	C	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	152818435	rs2239682	G	A	15111.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,595:1.00:595
chrX	152821887	rs3020957	C	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	152823728	rs2269415	G	C	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chrX	152825414	rs3020959	G	T	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chrX	152825433	rs2980018	A	G	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chrX	152830322	rs4243536	A	G	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	152864477	rs199537978	G	GC	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	152864513	rs200645137	G	GC	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	152909047	rs72616448	G	C	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	152913814	rs7882888	C	A	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	152914603	rs7883986	C	T	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	152938409	rs10542443	TAC	T	1564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.748;QD=4.89;ReadPosRankSum=-0.457;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:228,92:0.29:320
chrX	152954025	rs384573	A	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	153009259	rs181799737	A	G	135.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-4.347;QD=2.72;ReadPosRankSum=-2.025;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chrX	153009260	rs186385166	T	C	135.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-4.347;QD=2.72;ReadPosRankSum=-1.938;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:43,7:0.14:50
chrX	153009265	rs190970910	G	C	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-4.247;QD=2.97;ReadPosRankSum=-1.562;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chrX	153009272	.	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-4.039;QD=3.52;ReadPosRankSum=-0.708;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chrX	153009303	.	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-2.147;QD=3.56;ReadPosRankSum=-0.639;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chrX	153009304	.	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-2.147;QD=3.56;ReadPosRankSum=-0.639;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chrX	153038516	rs5945161	C	G	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	153039615	rs1543781	A	G	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chrX	153041132	rs5945162	C	T	7633.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chrX	153044369	rs2071121	C	A	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	153048403	rs916001	T	C	7430.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,290:0.99:292
chrX	153049345	rs4898441	G	A	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.00;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	153049354	rs4898442	A	G	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	153049389	rs3969088	A	G	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	153049535	rs4898444	A	G	13476.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,546:1.00:546
chrX	153049739	rs2269366	C	T	10089.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chrX	153052661	rs2269482	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	153053422	rs12558426	C	T	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	153053698	rs72198906	T	TG	1600.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	153054991	rs3788803	C	T	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	153055608	rs2071124	C	T	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chrX	153056311	rs17430	C	CAG	2741.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=40.32;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	153061775	rs2239714	A	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	153070999	rs3747312	G	A	7551.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chrX	153146400	rs5945361	A	G	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	153149117	rs193118116	GA	CG	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	153149170	rs142085600	G	C	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	153149708	rs77883713	G	GC	5389.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chrX	153149715	rs6643650	C	G	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	153150791	rs12156710	C	T	7725.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,302:1.00:303
chrX	153150929	rs41311376	G	A	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chrX	153151277	rs56026845	C	G	2523.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.74;ReadPosRankSum=0.595;SOR=0.492;set=HC	GT:AD:AF:DP	1/1:3,99:0.97:102
chrX	153151280	rs143464562	G	GCC	4465.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.36;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chrX	153151284	rs199975679	GT	G	4454.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.95;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	153151423	rs58566947	G	GCGGC	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	153151456	rs12837217	T	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	153151461	rs12837218	T	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	153151467	rs199929222	CG	C	60.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	153151491	rs36095229	GT	G	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	153153839	rs5987175	C	T	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chrX	153170447	rs55712963	G	GC	1415.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	153170980	rs56689668	T	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	153171993	rs5201	A	G	13038.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,503:1.00:503
chrX	153174819	rs11394527	T	TG	24696.73	.	AC=2;AF=1.00;AN=2;DB;DP=711;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.38;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,698:1.00:698
chrX	153174867	rs11405331	T	TG	20697.73	.	AC=2;AF=1.00;AN=2;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.21;SOR=0.696;set=HC	GT:AD:AF:DP	1/1:0,605:1.00:605
chrX	153175053	rs56015121	G	GC	1829.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	153176706	.	CTTT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=1.880;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chrX	153178459	rs5904376	G	GC	2571.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	153186412	rs34153599	A	AG	1669.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:3,65:0.96:68
chrX	153186484	rs11428457	T	TC	5740.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.89;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chrX	153202650	.	A	AAAATAAAT	477.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.81;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	153208197	rs11372702	T	TG	1023.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	153210179	rs146096296	T	TG	1135.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chrX	153210195	.	GCCC	G	349.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.97;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	153210199	.	GAC	G	348.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.87;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	153214748	rs201770950	C	T	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chrX	153215839	rs3027875	G	A	5454.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chrX	153277889	rs2239673	C	T	166.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	153278829	rs1059703	G	A	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chrX	153279822	.	TAAAAA	T,TA	1635.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=3.499;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.61;MQRankSum=0.381;QD=34.80;ReadPosRankSum=0.997;SOR=0.643;set=HC	GT:AD:AF:DP	1/2:1,21,25:0.45,0.53:47
chrX	153279858	rs5945174	G	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	153284192	rs1059702	A	G	9149.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chrX	153284483	rs1059701	G	A	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	153416435	rs199954237	C	T	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	153418541	rs949431	T	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	153420183	.	G	A	2588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=0.465;QD=4.87;ReadPosRankSum=2.961;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:369,163:0.31:532
chrX	153482563	rs138416189	G	C	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.39;MQRankSum=0.591;QD=19.43;ReadPosRankSum=-0.891;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,38:0.86:44
chrX	153577719	rs7063300	G	A	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chrX	153629155	rs12012747	A	G	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.63;QD=26.94;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	153633359	rs1130929	G	C	10363.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chrX	153633953	rs1050094	T	C	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	153637305	rs2070807	T	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	153657083	rs28497482	A	G	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chrX	153660041	rs11156577	C	T	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	153668022	rs370252579	CA	C	113.87	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chrX	153668172	rs68141802	A	G	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	153672550	.	CCCG	C	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.932;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:106,11:0.09:117
chrX	153994596	rs2728532	G	T	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	154009617	rs11318110	AG	A	684.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=28.53;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	154009644	rs57003686	G	GA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.904;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chrX	154013483	rs3215184	A	AC	386.90	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chrX	154020114	rs1126762	C	A	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,236:1.00:237
chrX	154051891	rs6643620	G	A	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	154317640	rs370627973	ATG	A	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.70;ReadPosRankSum=-0.519;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chrX	154456747	rs572013	A	G	3167.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.992;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.75;ReadPosRankSum=-0.586;SOR=0.302;set=HC	GT:AD:AF:DP	1/1:1,127:0.99:128
chrX	154721357	rs150926226	G	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.52;QD=15.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	154774663	rs2305517	G	A	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	154774707	rs2305518	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrY	13310559	.	T	C	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=9.595;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-14.570;QD=0.76;ReadPosRankSum=-4.547;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:217,21:0.09:238
chrY	13310567	rs80348613	T	C	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=8.501;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-14.853;QD=0.92;ReadPosRankSum=-3.745;SOR=1.305;set=HC	GT:AD:AF:DP	0/1:244,25:0.09:269
chrY	13310578	rs200185916	C	T	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-14.650;QD=3.04;ReadPosRankSum=-4.404;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:276,44:0.14:320
chrY	13310581	rs201255328	GG	CA	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.598;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-14.798;QD=3.36;ReadPosRankSum=-3.652;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:282,44:0.13:326
chrY	13310602	rs200323052	G	A	2208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=4.310;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-15.313;QD=5.65;ReadPosRankSum=-1.026;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:316,75:0.19:391
chrY	13310606	rs201423743	T	C	2211.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.760;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=2.820;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-15.693;QD=5.72;ReadPosRankSum=-0.115;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:311,76:0.20:387
chrY	13310607	rs199570822	G	A	2211.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.268;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=2.822;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-15.648;QD=5.74;ReadPosRankSum=0.108;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:309,76:0.20:385
chrY	13310610	rs74510459	A	C	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-15.226;QD=5.84;ReadPosRankSum=1.297;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:305,76:0.20:381
chrY	13310621	rs74943081	C	A	2418.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.025;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.453;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-15.176;QD=6.32;ReadPosRankSum=4.534;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:303,80:0.21:383
chrY	13310622	rs74864464	C	A	2418.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.453;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-15.176;QD=6.32;ReadPosRankSum=4.617;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:303,80:0.21:383
chrY	13310679	rs75367388	A	G	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.529;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-13.860;QD=3.14;ReadPosRankSum=-3.012;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:192,35:0.15:227
chrY	13310683	rs78176760	T	C	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.128;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.771;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-13.535;QD=3.19;ReadPosRankSum=-1.246;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:189,26:0.12:215
chrY	13310688	.	TG	T	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.078;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=4.544;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-13.916;QD=1.42;ReadPosRankSum=0.460;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:184,20:0.10:204
chrY	13310691	.	TC	T	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.828;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=7.415;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-13.441;QD=1.50;ReadPosRankSum=-0.435;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:182,22:0.11:204
chrY	13310719	rs79308907	G	A	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.310;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=14.599;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-11.603;QD=4.37;ReadPosRankSum=-2.623;SOR=1.437;set=HC	GT:AD:AF:DP	0/1:131,27:0.17:158
chrY	13310721	rs62599741	C	A	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.423;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=12.305;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-11.533;QD=4.42;ReadPosRankSum=-2.797;SOR=1.269;set=HC	GT:AD:AF:DP	0/1:128,28:0.18:156
chrY	13310740	rs75526384	G	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:108,29:0.21:137
chrY	13310768	rs79431658	G	C	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=6.927;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-7.886;QD=10.88;ReadPosRankSum=2.685;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:69,32:0.32:101
chrY	13310775	rs79927335	A	G	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=7.072;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-7.619;QD=12.20;ReadPosRankSum=3.214;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:62,33:0.35:95
chrY	13310784	rs75891039	T	G	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=5.907;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-7.066;QD=13.56;ReadPosRankSum=3.340;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chrY	14107068	rs9650861	A	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chrY	14107314	.	T	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.243;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=18.263;MLEAC=1;MLEAF=0.500;MQ=50.45;MQRankSum=-5.483;QD=2.40;ReadPosRankSum=-3.689;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:66,18:0.21:84
chrY	14898094	rs13305774	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chrY	14898435	rs149106583	C	CT	219.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-1.116;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chrY	14954404	rs147207338	C	CT	594.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chrY	14958218	rs13304344	C	T	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrY	15026424	rs2032624	A	C	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrY	15027529	rs2032636	T	G	2237.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.704;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.583;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=1.930;SOR=0.673;set=HC	GT:AD:AF:DP	1/1:1,88:0.99:89
chrY	21154323	rs10465459	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chrY	21154466	rs10465460	T	A	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,64:0.56:115
chrY	21154569	rs17855271	A	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.504;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chrY	21154603	rs79788321	A	C	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=1.104;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chrY	21477811	.	A	AAAAG	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.84;ReadPosRankSum=2.111;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14